Citrus Sinensis ID: 013459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccEEEccccccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHccEEEEccccccccccEccccccccEEEEEEccHHHHHHHHHHHHcccccccccccHHHHcccccccEcccHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEcHHHHHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccHHHHHHHHHHcHHHHcccccEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MPGGSSSGAAVAVAADLVDfslgidtvggvrvpsafcgilgfrpsygavshmgiipistsldtvgwfardpkilRHVGHVLLqlpfaaqrsprqiiIADDCFellkipadRVVQVVIKSTEKlfgrqvlkhenlgeyfdskvpslkgfhktnGELKNVMRLIQRYEFknnhnewiesvkpaldpdisAEIGEMLEISETVIENCKSIRNEMRSAISSLlkddgilvtpttaypppklggkemlsEDYQNRAFSLLSIASVSgccqvtvplgyydkcptsvSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLngnnatyySNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLeptnkraslSADRLRKVFM
Flexible Loop (DISEMBL)
mpggsssgAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLpfaaqrspRQIIIADDCFELLKIPADRVVQVVIKSTeklfgrqvlkhenlgeyfdskvpslkgfhktngELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSllkddgilvtPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEkgnqaykdKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTkainldkknvkayLRRGTAREMLGYYKEAIEDFSYALvleptnkraslsadrlrkvfm
Low Complexity Region (SEG)
MPggsssgaavavaaDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Disordered region (IsUnstruct)
*********AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY************EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL*********************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE******************
Disordered Region (DISOPRED)
MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL*********************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT*K******DRLRKVFM
Disordered Region (DISEMBL)
**********VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Disordered Region (DISPRO)
*************AADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIAT*************SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q9MUK5	593	Translocon at the outer m	N/A	no	0.963	0.718	0.708	0.0
Q9LVH5	589	Outer envelope protein 64	yes	no	0.993	0.745	0.699	1e-176
F4KCL7	603	Outer envelope protein 64	no	no	0.993	0.728	0.555	1e-138
Q9FR37	425	Amidase 1 OS=Arabidopsis	no	no	0.680	0.708	0.507	2e-85
Q6NU95	660	RNA polymerase II-associa	N/A	no	0.307	0.206	0.397	6e-19
Q9H6T3	665	RNA polymerase II-associa	no	no	0.319	0.212	0.4	6e-19
Q28IV3	657	RNA polymerase II-associa	yes	no	0.260	0.175	0.432	3e-18
P47345	477	Glutamyl-tRNA(Gln) amidot	yes	no	0.291	0.270	0.372	4e-18
Q68FQ7	659	RNA polymerase II-associa	yes	no	0.264	0.177	0.425	9e-18
Q9D706	660	RNA polymerase II-associa	yes	no	0.264	0.177	0.425	1e-17

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/436 (70%), Positives = 360/436 (82%), Gaps = 10/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           + VDFSLG+DT GGVRVP+ FCGILGFRPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR
Sbjct: 157 NFVDFSLGVDTSGGVRVPAGFCGILGFRPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLR 216

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGH+LLQ PF  QR+PRQIIIADDCF+ L +P DR  QVVIK+TEKLFG+QVLKH N  
Sbjct: 217 RVGHILLQAPFVMQRNPRQIIIADDCFQHLNVPLDRTSQVVIKATEKLFGKQVLKHINFE 276

Query: 136 EYFDSKVPSLKG--FHKTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
           +Y  SKV SLK     K+NG LK        NVM+ +QR+EF++ H+EW+  VKP L P 
Sbjct: 277 DYISSKVSSLKACSIQKSNGVLKSSSLKLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPA 336

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           +SA++ E  E+SE  IEN KS+R+E+R A++SLLKD+G+LV PT A PPPKLGGKE LS 
Sbjct: 337 VSAQLHEKFEVSELEIENSKSVRSELRVAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSH 396

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           DYQ+RA SLLSIAS+SGCCQVTVPLG++DK P SVS IARHGGDRFLLDT++ MY  LQE
Sbjct: 397 DYQSRALSLLSIASISGCCQVTVPLGFFDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQE 456

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           QADIA  SK S +  +++QSAEI+KEKGNQAYKDKQW KAI FYTEAIKL GNNATYYSN
Sbjct: 457 QADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSN 516

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RA AYLE GS+LQAE DCT AI+ DKKNVKAY RRGTAREMLGYYKEAI+DF YALVLEP
Sbjct: 517 RAQAYLELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEP 576

Query: 426 TNKRASLSADRLRKVF 441
           TNKRA+ SA+RLRK+F
Sbjct: 577 TNKRAASSAERLRKLF 592

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.
Pisum sativum (taxid: 3888)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/449 (69%), Positives = 362/449 (80%), Gaps = 10/449 (2%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGG+ SGAAVAVA + VDF+LGIDTVGGVRVP+ +CG+LGF+ SYGA+S+ GIIP+S+S
Sbjct: 139 IPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGFKSSYGAISNTGIIPVSSS 198

Query: 61  LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
           LD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF+LLKIP DR+ QVV KS 
Sbjct: 199 LDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCFQLLKIPVDRITQVVTKSA 258

Query: 121 EKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNG----------ELKNVMRLIQRYEFKNN 170
           EKLFGRQ+LKH+NL  YF++KVPSLK F +T             L NVM+L+QR+EF  N
Sbjct: 259 EKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTSRLLANVMQLLQRHEFLQN 318

Query: 171 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 230
           H +WI +VKPA+DP I +++ E  E++    EN  +IRNE R AI SLLKDDGILV PT 
Sbjct: 319 HGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETRVAIGSLLKDDGILVIPTL 378

Query: 231 AYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR 290
              PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+++KCP SVSFI RHGGDR
Sbjct: 379 PAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISVSFIGRHGGDR 438

Query: 291 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT 350
           FLLDTVQ MY SLQE + I T  K S     +++SAEIAKEKGNQA+K+K W KAI  Y+
Sbjct: 439 FLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEKGNQAFKEKLWQKAIGLYS 498

Query: 351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410
           EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKKNVKAYLRRGTAREMLG  
Sbjct: 499 EAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDC 558

Query: 411 KEAIEDFSYALVLEPTNKRASLSADRLRK 439
           K AIEDF YALVLEP NKRASLSA+RLRK
Sbjct: 559 KGAIEDFRYALVLEPNNKRASLSAERLRK 587

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1

 Score =  492 bits (1267), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/450 (55%), Positives = 313/450 (69%), Gaps = 11/450 (2%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGG SSG+AV+V A+LVDFSLGIDT GGVRVP+AFCGILGFRPS G VS +G++P S S
Sbjct: 152 VPGGCSSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQS 211

Query: 61  LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
           L+TVGWFA DP +L  VGH LL L     R  R +I ADD FEL  IP  + VQVV K+ 
Sbjct: 212 LETVGWFASDPSVLCQVGHALLNLSAVTHRRQRSLIFADDLFELSDIPKQKSVQVVRKAI 271

Query: 121 EKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKN----------VMRLIQRYEFKNN 170
           E L G +  KH N+G+Y  S VPSL  F + +G+ +N          VM  IQR+EFK N
Sbjct: 272 ENLSGYKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRALSSVMLAIQRHEFKTN 331

Query: 171 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 230
           H EW ++ K  L P  S ++   L+     I++   ++NEMR+ I SLLK+DGILV PT 
Sbjct: 332 HEEWWQTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATIQSLLKEDGILVIPTV 391

Query: 231 AYPPPKLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGD 289
           A PPP+L  K   S  ++ +R ++L  IAS+SGCCQVT+PLG +   P SVS +  +GGD
Sbjct: 392 ADPPPRLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHGDRPISVSLLTYYGGD 451

Query: 290 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFY 349
           +FLLDT  ++YASLQ+QA +A+     ++T    +++E+ KEKGN AYK KQW KA++FY
Sbjct: 452 KFLLDTTLDVYASLQDQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFY 511

Query: 350 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 409
           TEAIKLNG NATYY NRAAA+LE   F QAE DCTKA+ +DKKNVKAYLRRGTARE L  
Sbjct: 512 TEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVR 571

Query: 410 YKEAIEDFSYALVLEPTNKRASLSADRLRK 439
           YKEA  DF +ALVLEP NK A ++  RLRK
Sbjct: 572 YKEAAADFRHALVLEPQNKTAKVAEKRLRK 601

Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FR37|AMI1_ARATH Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1

 Score =  316 bits (809), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/315 (50%), Positives = 210/315 (66%), Gaps = 14/315 (4%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGGSSSG+AVAVAA LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S
Sbjct: 109 VPGGSSSGSAVAVAARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQS 168

Query: 61  LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
            DTVGWFARD   L+ VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S 
Sbjct: 169 FDTVGWFARDTATLKRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSV 228

Query: 121 EKLF-GRQVLKHENLGEYFDSKVPSLKGFHKTNG-------------ELKNVMRLIQRYE 166
           EK F G  V+K  NLGEY    VPSLK F  ++               L + MRL+QR+E
Sbjct: 229 EKSFGGNTVVKKVNLGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHE 288

Query: 167 FKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILV 226
           FK NH  WI SVKP   P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV
Sbjct: 289 FKINHGAWISSVKPEFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLV 348

Query: 227 TPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARH 286
            PT   PPP L       E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++
Sbjct: 349 IPTVPGPPPHLQANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKY 408

Query: 287 GGDRFLLDTVQNMYA 301
           G D FLL  V ++ A
Sbjct: 409 GSDGFLLSLVDSLAA 423

Amidase involved in auxin biosynthesis. Converts indole-3-acetamide into indole-3-acetic acid. Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

>sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 10/146 (6%)

Query: 297 QNMYASLQE-QADIATKSKLSTNTFNQKQSAEIAKEK---------GNQAYKDKQWLKAI 346
           Q +Y+S  + Q ++AT++K++     +K+  EI + K         GN  +K+ ++  AI
Sbjct: 245 QELYSSASDVQENMATEAKITVENEEEKKQIEIQQRKQQAIMQKDLGNAYFKEGKYEIAI 304

Query: 347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406
             Y++ ++ +  NA   +NRA AYL+   + +AEADCT AI+LD    KA+ RRGTA  M
Sbjct: 305 ECYSQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTLAISLDASYCKAFARRGTASIM 364

Query: 407 LGYYKEAIEDFSYALVLEPTNKRASL 432
           LG  KEA EDF   L L+P NK+A L
Sbjct: 365 LGKQKEAKEDFEMVLKLDPGNKQAVL 390

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus laevis (taxid: 8355)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 82/145 (56%), Gaps = 4/145 (2%)

Query: 302 SLQEQADIATKS----KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 357
           S  ++ADI  KS    +        KQ A   K++GN  +K+ ++ +AI  YT  I  +G
Sbjct: 254 SYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADG 313

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
            NA   +NRA AYL+   + +AE DCT+AI LD    KA+ RRGTAR  LG   EA +DF
Sbjct: 314 ANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDF 373

Query: 418 SYALVLEPTNKRASLSADRLRKVFM 442
              L+LEP NK+A     +++K  +
Sbjct: 374 ETVLLLEPGNKQAVTELSKIKKELI 398

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 75/118 (63%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
           +KQ A + K+ GN  +K+ ++  AI  Y++ ++ +  NA   +NRA AYL+   + +AE 
Sbjct: 280 RKQQAIMQKDLGNAYFKEGKYEIAIDCYSQGMEADTTNALLPANRAMAYLKIQKYKEAET 339

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
           DCT AI+LD    KA+ RRGTAR MLG  KEA EDF   L L+P NK+A L  +++ +
Sbjct: 340 DCTLAISLDASYCKAFARRGTARIMLGKQKEAKEDFEMVLKLDPGNKQAVLELEKISR 397

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus tropicalis (taxid: 8364)

>sp|P47345|GATA_MYCGE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=gatA PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 8/137 (5%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           + GGSSSG+A AVA D+V FS+  DT   +R P++ C ++GF+P+YG +S  G+ P + S
Sbjct: 139 IAGGSSSGSAYAVAKDIVPFSIATDTGDSIRRPASICNVVGFKPTYGLISRNGVFPYAPS 198

Query: 61  LDTVGWFARDPKILRHVGHVLL---QLPFAAQRSPRQIIIADDCFELLKIPADRVVQV-V 116
           +D VG FA+    +  V  V++   +  F++Q+SP +    +  F  L IP  R ++   
Sbjct: 199 MDHVGIFAKFVSDIAIVSDVVIKHDKTDFSSQKSPDE----NQFFNELAIPFTRSIRFGY 254

Query: 117 IKSTEKLFGRQVLKHEN 133
           +K  EKLF + + K  N
Sbjct: 255 LKPLEKLFNKHLQKKWN 271

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 71/120 (59%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
           +Q A   K+ GN  +K+ ++ +AI  YT  I  +  NA   +NRA AYL+   + +AE D
Sbjct: 279 RQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERD 338

Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
           CT+AI LD    KA+ RRGTAR  LG   EA +DF   L+LEP NK+A     R++K  +
Sbjct: 339 CTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELI 398

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 72/120 (60%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
           +Q A   K+ GN  +K+ ++ +AI  YT  I  +  NA   +NRA AYL+   + +AE D
Sbjct: 281 RQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERD 340

Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
           CT+AI LD    KA+ RRGTAR  LG   EA +DF   L+LEP NK+A+    R++K  +
Sbjct: 341 CTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELI 400

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
225456155	590	PREDICTED: translocon at the outer membr	0.963	0.722	0.770	0.0
224118646	593	amidase family protein [Populus trichoca	0.995	0.741	0.745	0.0
255579275	589	amidase, putative [Ricinus communis] gi|	0.961	0.721	0.747	0.0
224135565	592	amidase family protein [Populus trichoca	0.961	0.717	0.736	0.0
449497473	591	PREDICTED: translocon at the outer membr	0.963	0.720	0.724	0.0
357521651	594	Glutamyl-tRNA(Gln) amidotransferase subu	0.963	0.717	0.729	0.0
449439139	585	PREDICTED: LOW QUALITY PROTEIN: transloc	0.963	0.728	0.722	0.0
356512970	587	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.963	0.725	0.715	0.0
356524688	591	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.950	0.710	0.727	0.0
75336680	593	RecName: Full=Translocon at the outer me	0.963	0.718	0.708	0.0

>gi|225456155|ref|XP_002282402.1| PREDICTED: translocon at the outer membrane of chloroplasts 64 [Vitis vinifera] gi|297734325|emb|CBI15572.3| unnamed protein product [Vitis vinifera]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/436 (77%), Positives = 380/436 (87%), Gaps = 10/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           + VDFSLG+DTVGGVRVP+AFCG++GFRPS+GAVSHMGII +S+SLDTVGWFA+DP ILR
Sbjct: 154 NFVDFSLGLDTVGGVRVPAAFCGVIGFRPSHGAVSHMGIIHVSSSLDTVGWFAKDPSILR 213

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGHVLLQL +A QRSPRQII ADDCF+ L+IP DRV QVV+KSTEKLFGRQVLK ENL 
Sbjct: 214 RVGHVLLQLTYAVQRSPRQIIFADDCFQSLRIPVDRVYQVVLKSTEKLFGRQVLKRENLE 273

Query: 136 EYFDSKVPSLKGFH--KTNGELKN--------VMRLIQRYEFKNNHNEWIESVKPALDPD 185
            Y DSKVPSLK FH  KTNGE +N        +M  +QR+EFK+NH EWI SVKP LD  
Sbjct: 274 NYLDSKVPSLKAFHSQKTNGETRNSLIRSLVKIMHCLQRHEFKHNHEEWINSVKPILDAS 333

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           IS+++ ++LE+++T IENC+S R E+RSA++SLLKDDGILV PT A PPPKLGGKE LSE
Sbjct: 334 ISSQLHDVLEVADTEIENCQSSRMEIRSALNSLLKDDGILVIPTVADPPPKLGGKESLSE 393

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           +YQNR   LLSIAS+SGCCQVTVPLG YDK P SVSF+ARHGGDRFLLDTVQ MYASLQE
Sbjct: 394 EYQNRTLGLLSIASMSGCCQVTVPLGLYDKYPVSVSFMARHGGDRFLLDTVQTMYASLQE 453

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           QADIA KSKLS+N  +++ SAEIAKEKGNQA+KDKQW KA+ FYTEAIKL+GNNATYYSN
Sbjct: 454 QADIAAKSKLSSNAVDRETSAEIAKEKGNQAFKDKQWQKAVGFYTEAIKLSGNNATYYSN 513

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RAAAYLE GSFLQAEADCT+AINLDKKNVKAYLRRGTAREMLGYYK+AIEDF YALVLEP
Sbjct: 514 RAAAYLEMGSFLQAEADCTEAINLDKKNVKAYLRRGTAREMLGYYKDAIEDFRYALVLEP 573

Query: 426 TNKRASLSADRLRKVF 441
           TNKRASLSADRL+K+F
Sbjct: 574 TNKRASLSADRLKKLF 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118646|ref|XP_002317872.1| amidase family protein [Populus trichocarpa] gi|222858545|gb|EEE96092.1| amidase family protein [Populus trichocarpa]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/451 (74%), Positives = 384/451 (85%), Gaps = 11/451 (2%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGGS SGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCG++GFRPSYGA+S  G++P+S S
Sbjct: 140 VPGGSCSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGVIGFRPSYGAISKTGVLPVSAS 199

Query: 61  LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
           LDTVGWFA+DP ILR VGHVLLQ  F  QRSPRQII+A+DCF+LLKIP DRV QVV+ ST
Sbjct: 200 LDTVGWFAKDPNILRRVGHVLLQPAFGGQRSPRQIIMAEDCFQLLKIPVDRVAQVVVNST 259

Query: 121 EKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK--------NVMRLIQRYEFKNN 170
           EK FGRQVLKHE L  Y +SKVPSLK FH  K NG++K        +VM+L+ RYEF++N
Sbjct: 260 EKHFGRQVLKHEILDVYLNSKVPSLKEFHNKKKNGDVKTSSIRLLAHVMQLLHRYEFRSN 319

Query: 171 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 230
           H EWI + KP L+PD SA++ E+++ISE  IE CKSIR EMR AI+SLLKDDGILV PT 
Sbjct: 320 HEEWINTEKPILEPDFSAQMNEIMKISEAEIELCKSIREEMRLAINSLLKDDGILVVPTM 379

Query: 231 AYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR 290
           AY PPKL GKE+LSE+Y++ +FSLLSIAS+SGCCQVTVPLGYYDKCP SVS IARHG DR
Sbjct: 380 AYLPPKLDGKEILSEEYKSSSFSLLSIASLSGCCQVTVPLGYYDKCPVSVSLIARHGNDR 439

Query: 291 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT 350
           FLLDT+Q MYASLQEQA+   KSK S NT + + SAE+AKEKGNQA+K+KQW KAIS+Y 
Sbjct: 440 FLLDTLQTMYASLQEQAETHVKSK-SRNTDSGENSAEMAKEKGNQAFKEKQWKKAISYYN 498

Query: 351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410
           EAIKLN  NATYYSNRAAAYLE GSF QAEADC+KAINLDKKNVKAYLRRGTAREMLGYY
Sbjct: 499 EAIKLNDKNATYYSNRAAAYLELGSFHQAEADCSKAINLDKKNVKAYLRRGTAREMLGYY 558

Query: 411 KEAIEDFSYALVLEPTNKRASLSADRLRKVF 441
           K+AIEDF YALVLEPTNKRASLSA+RLRKVF
Sbjct: 559 KDAIEDFKYALVLEPTNKRASLSAERLRKVF 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579275|ref|XP_002530483.1| amidase, putative [Ricinus communis] gi|223529980|gb|EEF31906.1| amidase, putative [Ricinus communis]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/436 (74%), Positives = 376/436 (86%), Gaps = 11/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           +LVDFSLG+DTVGGVRVP+ FCGI+GFRPSYGA+ + GI+PIS SLDTVGWFARDP ++R
Sbjct: 154 NLVDFSLGVDTVGGVRVPAGFCGIIGFRPSYGAIPNTGILPISASLDTVGWFARDPNVIR 213

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGH+LLQLPF  QR+P+QIIIADDCF+LLKIP DR+ QVVIKSTEK+FGRQVL+HE L 
Sbjct: 214 RVGHLLLQLPFGVQRNPKQIIIADDCFQLLKIPVDRIAQVVIKSTEKIFGRQVLRHEILE 273

Query: 136 EYFDSKVPSLKGFH--KTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
           +   S+V SLK  H  KTNGEL+        N+MRL+ RYEF++NH EWI   KP +D +
Sbjct: 274 DVLFSRVRSLKLLHDQKTNGELRTSSIRLLANIMRLLHRYEFRHNHEEWINIEKPNVDHN 333

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           ISA+I E+++I +T IE  KSIR EMR+AI+SLLKDDGILV PTTA+ PPKLGGK+MLSE
Sbjct: 334 ISAQIHEIVDIPDTEIEIFKSIRQEMRAAINSLLKDDGILVIPTTAHLPPKLGGKDMLSE 393

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           DYQ   FSLLSIAS+SGCCQVT+PLG Y+KCP SVSFIARHGGDRFL+DTVQNMY+SLQE
Sbjct: 394 DYQILLFSLLSIASLSGCCQVTIPLGLYEKCPVSVSFIARHGGDRFLMDTVQNMYSSLQE 453

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           Q D+  K K  T+  NQ++SAE+AKEKGNQAYK+KQW KAIS+YTEAIKLNG NATYYSN
Sbjct: 454 QVDMLAKPKSHTSD-NQERSAEMAKEKGNQAYKEKQWQKAISYYTEAIKLNGKNATYYSN 512

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RAAAYLE GSFLQAEADCTKAINLDKKNVKAYLRRGTAREM+GYYKEAIEDF YALVLEP
Sbjct: 513 RAAAYLELGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMIGYYKEAIEDFQYALVLEP 572

Query: 426 TNKRASLSADRLRKVF 441
           TNKRA+LSA+RLRK+F
Sbjct: 573 TNKRAALSAERLRKMF 588

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135565|ref|XP_002322105.1| amidase family protein [Populus trichocarpa] gi|222869101|gb|EEF06232.1| amidase family protein [Populus trichocarpa]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/436 (73%), Positives = 374/436 (85%), Gaps = 11/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           +LVDFSLG+DTVGGVRVP+ FCGI+GFRPSYGA+S +G++P+S SLDTVGWFA+DP ILR
Sbjct: 154 NLVDFSLGVDTVGGVRVPAGFCGIIGFRPSYGAISKIGVLPVSVSLDTVGWFAKDPNILR 213

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGHVLLQ  F  QRSPRQII+ADDCF+LLKIP DR+ QVV+KSTEK FGRQ+LKHE L 
Sbjct: 214 RVGHVLLQSAFGGQRSPRQIIMADDCFQLLKIPVDRIAQVVVKSTEKHFGRQLLKHEILD 273

Query: 136 EYFDSKVPSLKGFH--KTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
            Y +SKVPSLK FH  KTNGE+K        NVM+L+ RYEF++NH EWI +VKP L+P+
Sbjct: 274 VYLNSKVPSLKEFHNKKTNGEVKTSSIRLLANVMQLLHRYEFRSNHEEWINTVKPILEPN 333

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           +SA++ E++E+S+  IE CKSIR EMRSAI+SLLKDDGILV PTTAY PPKLGGKE+LSE
Sbjct: 334 LSAQMNEIMELSDAEIELCKSIREEMRSAINSLLKDDGILVVPTTAYLPPKLGGKEILSE 393

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           +YQ+ +F LLSIAS+SGCCQVTVPLGYY+KCP SVS IARHG DRFLLDTVQ MY +LQE
Sbjct: 394 EYQSSSFGLLSIASLSGCCQVTVPLGYYNKCPVSVSLIARHGSDRFLLDTVQTMYKTLQE 453

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           QA+    SK S+N  +++ SAE+AKEKGNQA+K++QW KAIS+Y EAIKLN  NATYYSN
Sbjct: 454 QAETYVNSK-SSNKDSRENSAEMAKEKGNQAFKEQQWQKAISYYNEAIKLNDKNATYYSN 512

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RAAAYLE GSF  AEADC+ AINLDKKNVKAYLRRGTAREMLGYYK+AIEDF YALVLEP
Sbjct: 513 RAAAYLELGSFQHAEADCSNAINLDKKNVKAYLRRGTAREMLGYYKDAIEDFKYALVLEP 572

Query: 426 TNKRASLSADRLRKVF 441
           TNKRASLSA+RL+KVF
Sbjct: 573 TNKRASLSAERLQKVF 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497473|ref|XP_004160411.1| PREDICTED: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/436 (72%), Positives = 366/436 (83%), Gaps = 10/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           +LVDFSLGIDTVG VR+P++FCGILGFRPS+G+VS +GI+P+S SLDTVG FA+DP +LR
Sbjct: 154 NLVDFSLGIDTVGDVRIPASFCGILGFRPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLR 213

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGHVLLQLP+A QR+PRQIIIADDCF+LLKIP DR+ Q V KSTEKLFGRQ LKHENLG
Sbjct: 214 RVGHVLLQLPYAVQRNPRQIIIADDCFQLLKIPVDRITQAVTKSTEKLFGRQALKHENLG 273

Query: 136 EYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
            Y  SKVP+LK     KTNG L         N+M+ ++R EFK NH EWI+SVKP LD  
Sbjct: 274 SYLSSKVPNLKELIGKKTNGNLNSASIRVLANLMQTVERIEFKGNHGEWIDSVKPDLDSA 333

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           +  ++ E LEIS+T+IE  KS+RNEMR AI+SLLKDDG+LV PTT  PPPKLGGKE+ SE
Sbjct: 334 LMEQLNEKLEISDTMIEKFKSVRNEMRMAINSLLKDDGVLVIPTTVDPPPKLGGKEIFSE 393

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           +YQ R FS LSIAS+SGCCQVT+PLG++D CP SVSF+ARHG DRFLLD VQ MY SLQE
Sbjct: 394 EYQTRVFSSLSIASISGCCQVTLPLGFHDSCPVSVSFLARHGADRFLLDIVQTMYKSLQE 453

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           +A+ A+KSK S N  +Q+QSAEIAKEKGNQAYK+KQW KAI  YTEAIKLN  NATYYSN
Sbjct: 454 EAEAASKSKFSKNAVSQEQSAEIAKEKGNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSN 513

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RAAAYLE G F QAEADC+KAI+LDKKNVK+YLRRGTAREMLG+YKEAIEDFS+ALVLEP
Sbjct: 514 RAAAYLELGRFHQAEADCSKAIDLDKKNVKSYLRRGTAREMLGFYKEAIEDFSHALVLEP 573

Query: 426 TNKRASLSADRLRKVF 441
           TNKRAS+SA+RLRK+F
Sbjct: 574 TNKRASISAERLRKLF 589

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521651|ref|XP_003631114.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355525136|gb|AET05590.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/436 (72%), Positives = 366/436 (83%), Gaps = 10/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           + VDFSLG+DT GGVRVP+ FCGILGFRPS+GAVSH GIIP+STSLDTVGWFA+DP ILR
Sbjct: 159 NFVDFSLGVDTSGGVRVPAGFCGILGFRPSHGAVSHGGIIPVSTSLDTVGWFAKDPDILR 218

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGH+LLQ PF  QRSPRQIIIADDCF+ L +P DR  QVVIK+TEKLFG+QVLKH NL 
Sbjct: 219 RVGHILLQAPFVMQRSPRQIIIADDCFQHLNVPLDRSSQVVIKATEKLFGKQVLKHINLE 278

Query: 136 EYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
            Y  SKVPSLK     K NGELK        N+M+ +QR+EF + H+EW+  VKP L P 
Sbjct: 279 GYIRSKVPSLKACSGQKANGELKSSSLILLANIMQFLQRHEFGHMHDEWMSIVKPDLHPA 338

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           +SA++ E  ++SE  +EN KS+R+EMR A++SLLKD+GILV PT A PPPKLGGKE+LS+
Sbjct: 339 VSAQLHEKFDVSEVEMENSKSVRSEMRVAVNSLLKDEGILVIPTVADPPPKLGGKEILSQ 398

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           DYQ+RAFSLLSIAS+SGCCQVTVPLG+YDK P SVS IAR+GGDRFLLDT++ MY SLQE
Sbjct: 399 DYQSRAFSLLSIASISGCCQVTVPLGFYDKYPVSVSLIARYGGDRFLLDTLKTMYTSLQE 458

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           QADIA  SK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAIKL GNNATYYSN
Sbjct: 459 QADIAATSKASRNVVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSN 518

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RA AYLE GS+LQAEADCTKAI+LDKK+VKAY RRGTAREMLGYYKEAI+DF YALVLEP
Sbjct: 519 RAQAYLELGSYLQAEADCTKAISLDKKSVKAYFRRGTAREMLGYYKEAIDDFKYALVLEP 578

Query: 426 TNKRASLSADRLRKVF 441
           TNKRA+ +A+RLRK+F
Sbjct: 579 TNKRAASAAERLRKLF 594

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439139|ref|XP_004137345.1| PREDICTED: LOW QUALITY PROTEIN: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/436 (72%), Positives = 365/436 (83%), Gaps = 10/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           +LVDFSLGIDTVG VR+P++FCGILGFRPS+G+VS +GI+P+S SLDTVG FA+DP +LR
Sbjct: 148 NLVDFSLGIDTVGDVRIPASFCGILGFRPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLR 207

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGHVLLQLP+A QR+PRQIIIADDCF+LLKIP DR+ Q V KSTEKLFGRQ LKHENLG
Sbjct: 208 RVGHVLLQLPYAVQRNPRQIIIADDCFQLLKIPVDRITQAVTKSTEKLFGRQALKHENLG 267

Query: 136 EYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
            Y  SKVP+LK     KTNG L         N+M+ ++R EFK NH EWI+SVKP LD  
Sbjct: 268 SYLSSKVPNLKELIGKKTNGNLNSASIRVLANLMQTVERIEFKGNHGEWIDSVKPDLDSA 327

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           +  ++ E LEIS+T+IE  KS+RNEMR AI+SLLKDDG+LV PTT   PPKLGGKE+ SE
Sbjct: 328 LMEQLNEKLEISDTMIEKFKSVRNEMRMAINSLLKDDGVLVIPTTVDSPPKLGGKEIFSE 387

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           +YQ R FS LSIAS+SGCCQVT+PLG++D CP SVSF+ARHG DRFLLD VQ MY SLQE
Sbjct: 388 EYQTRVFSSLSIASISGCCQVTLPLGFHDSCPVSVSFLARHGADRFLLDIVQTMYRSLQE 447

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           +A+ A+KSK S N  +Q+QSAEIAKEKGNQAYK+KQW KAI  YTEAIKLN  NATYYSN
Sbjct: 448 EAEAASKSKFSKNAVSQEQSAEIAKEKGNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSN 507

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RAAAYLE G F QAEADC+KAI+LDKKNVK+YLRRGTAREMLG+YKEAIEDFS+ALVLEP
Sbjct: 508 RAAAYLELGRFHQAEADCSKAIDLDKKNVKSYLRRGTAREMLGFYKEAIEDFSHALVLEP 567

Query: 426 TNKRASLSADRLRKVF 441
           TNKRAS+SA+RLRK+F
Sbjct: 568 TNKRASISAERLRKLF 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512970|ref|XP_003525187.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/436 (71%), Positives = 371/436 (85%), Gaps = 10/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           + VDF+LGIDT GGVRVP+ FCGILGFRPS+GAVSHMGIIPISTSLDTVGWFA+DP ILR
Sbjct: 151 NFVDFALGIDTTGGVRVPAGFCGILGFRPSHGAVSHMGIIPISTSLDTVGWFAKDPNILR 210

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGH+LLQ PF  QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKLFGRQVLKH NLG
Sbjct: 211 RVGHILLQAPFVMQRSPRQIVIADDCFQHINVPLDRSSQVVVKATEKLFGRQVLKHINLG 270

Query: 136 EYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
           +Y  S+VPSLKG    K NGE+K        ++M+ +QR+EF+  H++W+ +VKP L P 
Sbjct: 271 DYLSSRVPSLKGCSGQKPNGEVKASSLKLLAHIMQFLQRHEFRLKHDDWMNTVKPDLHPG 330

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           +SA++ E  E+S+  IEN KS+R+EMR+A++SLLKD+GILV PT A PPPKLGGKE+LSE
Sbjct: 331 VSAQLHEKFEVSDAEIENSKSVRSEMRAAVNSLLKDEGILVIPTVADPPPKLGGKEILSE 390

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           DYQ+RAFSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLLDT+Q +Y +LQE
Sbjct: 391 DYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLLDTLQTVYTTLQE 450

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           QADIA+KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAIKL G+NATYYSN
Sbjct: 451 QADIASKSKSSGNVVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAIKLCGDNATYYSN 510

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RA AYLE  S+LQA  DCTKAI+LDKKNVKAY RRGTAR+MLGYYKEAI+DF +ALVLEP
Sbjct: 511 RAQAYLELESYLQAVEDCTKAISLDKKNVKAYFRRGTARQMLGYYKEAIDDFKHALVLEP 570

Query: 426 TNKRASLSADRLRKVF 441
           TNKRA+ +A+RLRK+F
Sbjct: 571 TNKRAASAAERLRKLF 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524688|ref|XP_003530960.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/430 (72%), Positives = 368/430 (85%), Gaps = 10/430 (2%)

Query: 22  LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 81
           LGIDTVGGVRVP+ FCGILGFRPS+GAVSH+GIIPISTSLDTVGWFA+DP ILR VGH+L
Sbjct: 161 LGIDTVGGVRVPAGFCGILGFRPSHGAVSHLGIIPISTSLDTVGWFAKDPNILRRVGHIL 220

Query: 82  LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSK 141
           LQ PFA QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKLFGRQVLKH NLG+Y  S+
Sbjct: 221 LQAPFAMQRSPRQIVIADDCFQHINVPLDRSSQVVVKTTEKLFGRQVLKHINLGDYLSSR 280

Query: 142 VPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIG 191
           VPSLKG    KTNGE+K        N+M+ +QR+EF+  H+EW+ +VKP L P +SA++ 
Sbjct: 281 VPSLKGCSGQKTNGEVKASALKLLANIMQSLQRHEFRLKHDEWMNTVKPELHPGVSAQLH 340

Query: 192 EMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRA 251
           E  E+S+  IEN KS+R+EM +A++SLLKD+GILV PT A PPPKLGGKE+LSEDYQ+RA
Sbjct: 341 EKFEVSDAEIENSKSVRSEMCAAVNSLLKDEGILVIPTVADPPPKLGGKEILSEDYQSRA 400

Query: 252 FSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIAT 311
           FSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLLDT+Q +Y +LQEQADIA+
Sbjct: 401 FSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLLDTLQTVYTTLQEQADIAS 460

Query: 312 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL 371
           KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAIKL G+NATYYSNRA AYL
Sbjct: 461 KSKSSGNAVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAIKLCGDNATYYSNRAQAYL 520

Query: 372 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431
             GS+LQA  DCTKAI+LDKKNVKAY RRGTAREMLGYYKEAI+DF +ALVLEPTNKRA+
Sbjct: 521 GLGSYLQAVEDCTKAISLDKKNVKAYFRRGTAREMLGYYKEAIDDFKHALVLEPTNKRAA 580

Query: 432 LSADRLRKVF 441
            +A+RLRK+F
Sbjct: 581 SAAERLRKLF 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75336680|sp|Q9MUK5.1|TOC64_PEA RecName: Full=Translocon at the outer membrane of chloroplasts 64 gi|7453538|gb|AAF62870.1|AF179282_1 Toc64 [Pisum sativum]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/436 (70%), Positives = 360/436 (82%), Gaps = 10/436 (2%)

Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
           + VDFSLG+DT GGVRVP+ FCGILGFRPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR
Sbjct: 157 NFVDFSLGVDTSGGVRVPAGFCGILGFRPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLR 216

Query: 76  HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
            VGH+LLQ PF  QR+PRQIIIADDCF+ L +P DR  QVVIK+TEKLFG+QVLKH N  
Sbjct: 217 RVGHILLQAPFVMQRNPRQIIIADDCFQHLNVPLDRTSQVVIKATEKLFGKQVLKHINFE 276

Query: 136 EYFDSKVPSLKG--FHKTNGELK--------NVMRLIQRYEFKNNHNEWIESVKPALDPD 185
           +Y  SKV SLK     K+NG LK        NVM+ +QR+EF++ H+EW+  VKP L P 
Sbjct: 277 DYISSKVSSLKACSIQKSNGVLKSSSLKLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPA 336

Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 245
           +SA++ E  E+SE  IEN KS+R+E+R A++SLLKD+G+LV PT A PPPKLGGKE LS 
Sbjct: 337 VSAQLHEKFEVSELEIENSKSVRSELRVAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSH 396

Query: 246 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
           DYQ+RA SLLSIAS+SGCCQVTVPLG++DK P SVS IARHGGDRFLLDT++ MY  LQE
Sbjct: 397 DYQSRALSLLSIASISGCCQVTVPLGFFDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQE 456

Query: 306 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365
           QADIA  SK S +  +++QSAEI+KEKGNQAYKDKQW KAI FYTEAIKL GNNATYYSN
Sbjct: 457 QADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSN 516

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           RA AYLE GS+LQAE DCT AI+ DKKNVKAY RRGTAREMLGYYKEAI+DF YALVLEP
Sbjct: 517 RAQAYLELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEP 576

Query: 426 TNKRASLSADRLRKVF 441
           TNKRA+ SA+RLRK+F
Sbjct: 577 TNKRAASSAERLRKLF 592

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.997	0.743	0.687	2.1e-164
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.993	0.745	0.679	1.8e-158
TAIR|locus:2184757	603	TOC64-V "AT5G09420" [Arabidops	0.959	0.703	0.551	4.2e-118
TAIR|locus:2036029	425	AMI1 "AT1G08980" [Arabidopsis	0.680	0.708	0.476	3.3e-70
UNIPROTKB|Q60AB7	341	MCA0950 "Amidase family protei	0.617	0.800	0.301	2.5e-25
ZFIN|ZDB-GENE-050327-75	481	zgc:110801 "zgc:110801" [Danio	0.262	0.241	0.413	1.3e-17
MGI|MGI:1277218	660	Rpap3 "RNA polymerase II assoc	0.312	0.209	0.410	8e-17
ZFIN|ZDB-GENE-040426-928	273	rpap3 "RNA polymerase II assoc	0.298	0.483	0.353	1.7e-15
UNIPROTKB|F1RM25	499	PPP5C "Serine/threonine-protei	0.260	0.230	0.382	2.2e-15
UNIPROTKB|F1N719	499	PPP5C "Serine/threonine-protei	0.260	0.230	0.373	2.8e-15

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 1600 (568.3 bits), Expect = 2.1e-164, P = 2.1e-164
 Identities = 310/451 (68%), Positives = 362/451 (80%)

Query:     1 MPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
             +P             + VDFSLG+DT GGVRVP+ FCGILGFRPS+GAVSH+GIIP+STS
Sbjct:   142 VPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGFRPSHGAVSHVGIIPVSTS 201

Query:    61 LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
             LDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF+ L +P DR  QVVIK+T
Sbjct:   202 LDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCFQHLNVPLDRTSQVVIKAT 261

Query:   121 EKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK--------NVMRLIQRYEFKNN 170
             EKLFG+QVLKH N  +Y  SKV SLK     K+NG LK        NVM+ +QR+EF++ 
Sbjct:   262 EKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSLKLLANVMQSLQRHEFEHT 321

Query:   171 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 230
             H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R A++SLLKD+G+LV PT 
Sbjct:   322 HSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELRVAVNSLLKDEGVLVIPTV 381

Query:   231 AYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR 290
             A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG++DK P SVS IARHGGDR
Sbjct:   382 ADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGFFDKNPVSVSLIARHGGDR 441

Query:   291 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT 350
             FLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEKGNQAYKDKQW KAI FYT
Sbjct:   442 FLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYT 501

Query:   351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410
             EAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKKNVKAY RRGTAREMLGYY
Sbjct:   502 EAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYY 561

Query:   411 KEAIEDFSYALVLEPTNKRASLSADRLRKVF 441
             KEAI+DF YALVLEPTNKRA+ SA+RLRK+F
Sbjct:   562 KEAIDDFKYALVLEPTNKRAASSAERLRKLF 592

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 1544 (548.6 bits), Expect = 1.8e-158, P = 1.8e-158
 Identities = 305/449 (67%), Positives = 353/449 (78%)

Query:     1 MPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
             +P             + VDF+LGIDTVGGVRVP+ +CG+LGF+ SYGA+S+ GIIP+S+S
Sbjct:   139 IPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGFKSSYGAISNTGIIPVSSS 198

Query:    61 LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
             LD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF+LLKIP DR+ QVV KS 
Sbjct:   199 LDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCFQLLKIPVDRITQVVTKSA 258

Query:   121 EKLFGRQVLKHENLGEYFDSKVPSLKGFHKT----NGE------LKNVMRLIQRYEFKNN 170
             EKLFGRQ+LKH+NL  YF++KVPSLK F +T    N +      L NVM+L+QR+EF  N
Sbjct:   259 EKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTSRLLANVMQLLQRHEFLQN 318

Query:   171 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 230
             H +WI +VKPA+DP I +++ E  E++    EN  +IRNE R AI SLLKDDGILV PT 
Sbjct:   319 HGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETRVAIGSLLKDDGILVIPTL 378

Query:   231 AYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR 290
                PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+++KCP SVSFI RHGGDR
Sbjct:   379 PAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISVSFIGRHGGDR 438

Query:   291 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT 350
             FLLDTVQ MY SLQE + I T  K S     +++SAEIAKEKGNQA+K+K W KAI  Y+
Sbjct:   439 FLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEKGNQAFKEKLWQKAIGLYS 498

Query:   351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410
             EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKKNVKAYLRRGTAREMLG  
Sbjct:   499 EAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDC 558

Query:   411 KEAIEDFSYALVLEPTNKRASLSADRLRK 439
             K AIEDF YALVLEP NKRASLSA+RLRK
Sbjct:   559 KGAIEDFRYALVLEPNNKRASLSAERLRK 587

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2184757 TOC64-V "AT5G09420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 240/435 (55%), Positives = 300/435 (68%)

Query:    16 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 75
             +LVDFSLGIDT GGVRVP+AFCGILGFRPS G VS +G++P S SL+TVGWFA DP +L 
Sbjct:   167 ELVDFSLGIDTTGGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLC 226

Query:    76 HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 135
              VGH LL L     R  R +I ADD FEL  IP  + VQVV K+ E L G +  KH N+G
Sbjct:   227 QVGHALLNLSAVTHRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVG 286

Query:   136 EYFDSKVPSLKGFHKTNGELKN----------VMRLIQRYEFKNNHNEWIESVKPALDPD 185
             +Y  S VPSL  F + +G+ +N          VM  IQR+EFK NH EW ++ K  L P 
Sbjct:   287 QYVASNVPSLAEFCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPR 346

Query:   186 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS- 244
              S ++   L+     I++   ++NEMR+ I SLLK+DGILV PT A PPP+L  K   S 
Sbjct:   347 FSNDVVTALKSKNESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSL 406

Query:   245 EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 304
              ++ +R ++L  IAS+SGCCQVT+PLG +   P SVS +  +GGD+FLLDT  ++YASLQ
Sbjct:   407 NEFLDRTYALSCIASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQ 466

Query:   305 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 364
             +QA +A+     ++T    +++E+ KEKGN AYK KQW KA++FYTEAIKLNG NATYY 
Sbjct:   467 DQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYC 526

Query:   365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
             NRAAA+LE   F QAE DCTKA+ +DKKNVKAYLRRGTARE L  YKEA  DF +ALVLE
Sbjct:   527 NRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLE 586

Query:   425 PTNKRASLSADRLRK 439
             P NK A ++  RLRK
Sbjct:   587 PQNKTAKVAEKRLRK 601

GO:0004040 "amidase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2036029 AMI1 "AT1G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 150/315 (47%), Positives = 197/315 (62%)

Query:     1 MPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
             +P              LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S
Sbjct:   109 VPGGSSSGSAVAVAARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQS 168

Query:    61 LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
              DTVGWFARD   L+ VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S 
Sbjct:   169 FDTVGWFARDTATLKRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSV 228

Query:   121 EKLFG-RQVLKHENLGEYFDSKVPSLKGFHK-----TNGE--------LKNVMRLIQRYE 166
             EK FG   V+K  NLGEY    VPSLK F       T  E        L + MRL+QR+E
Sbjct:   229 EKSFGGNTVVKKVNLGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHE 288

Query:   167 FKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILV 226
             FK NH  WI SVKP   P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV
Sbjct:   289 FKINHGAWISSVKPEFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLV 348

Query:   227 TPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARH 286
              PT   PPP L       E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++
Sbjct:   349 IPTVPGPPPHLQANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKY 408

Query:   287 GGDRFLLDTVQNMYA 301
             G D FLL  V ++ A
Sbjct:   409 GSDGFLLSLVDSLAA 423

GO:0004040 "amidase activity" evidence=ISS;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IDA

GO:0043864 "indoleacetamide hydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q60AB7 MCA0950 "Amidase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 288 (106.4 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 89/295 (30%), Positives = 140/295 (47%)

Query:    18 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 77
             VDF+LG DT G +R+P++ CGI G RPS+G VS  G+ P++   DTVG FAR+ + L+ V
Sbjct:    62 VDFALGTDTAGSIRLPASNCGIWGMRPSHGGVSVAGVNPLAPGFDTVGAFARNGETLQRV 121

Query:    78 GHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEY 137
               +LL +   +  S R  ++ +  F+  + PA R          K FG  VLK   L   
Sbjct:   122 MSLLLNVDPLSTVSGRLWLLQEG-FDAAE-PAVR----------KAFG-PVLKR--LAGS 166

Query:   138 FDSKVPSLKGFHKTNG-----ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGE 192
             F S+  SL+      G       + V + IQ  E  +    WIES +PAL          
Sbjct:   167 FPSREISLRSIDGEAGVSGMDNWRQVFQPIQWAEIWSTLGTWIESARPALGERTRRNFEL 226

Query:   193 MLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG--GKEMLSEDYQNR 250
                +   ++    + R   R+A++ +L  + ++  PT   P P  G  G +    DY  R
Sbjct:   227 AKGLDRRLLPAALARRERYRAALARVLGPEDVICFPTVHAPAPLKGSLGLDRTQGDYFPR 286

Query:   251 AFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305
               + ++IA +    Q+++P    +  P  +S +A  G D FL+   Q + A L +
Sbjct:   287 VLARMAIAGICRLPQISLPAVEVEGAPVGLSLLAAEGNDAFLMAFAQGVAAVLDD 341

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050327-75 zgc:110801 "zgc:110801" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 48/116 (41%), Positives = 69/116 (59%)

Query:   325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
             SAE  KEK N  +KDK +  AI +YTEA+ LN  N  YYSNR+ +YL +  +  A AD T
Sbjct:     9 SAEKLKEKANDYFKDKDYENAIKYYTEALDLNPTNPIYYSNRSLSYLRTECYGYALADAT 68

Query:   385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
             +A+ LDK  +K Y RR T+   LG +K A++D+   + + P +K A +      K+
Sbjct:    69 RALELDKNYLKGYYRRATSNMALGKFKAALKDYETVVRVRPNDKDAKMKYQECNKI 124

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1277218 Rpap3 "RNA polymerase II associated protein 3" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 8.0e-17, P = 8.0e-17
 Identities = 57/139 (41%), Positives = 79/139 (56%)

Query:   301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 360
             A+  E    A +SK  T     +Q A   K+ GN  +K+ ++ +AI  YT  I  +  NA
Sbjct:   260 AAAAESKPAAGESK-PTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNA 318

Query:   361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
                +NRA AYL+   + +AE DCT+AI LD    KA+ RRGTAR  LG   EA +DF   
Sbjct:   319 LLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETV 378

Query:   421 LVLEPTNKRASLSADRLRK 439
             L+LEP NK+A+    R++K
Sbjct:   379 LLLEPGNKQAATELSRIKK 397

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-928 rpap3 "RNA polymerase II associated protein 3" [Danio rerio (taxid:7955)]

 Score = 201 (75.8 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 47/133 (35%), Positives = 68/133 (51%)

Query:   296 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIK 354
             V+    S+  +      ++  +   N  +   +A KEKGNQ +KD Q+  A+  YT A+ 
Sbjct:    97 VEKALESMDAEESPVQSNESDSECVNVDRDLALAEKEKGNQFFKDGQFDSAVECYTRAMD 156

Query:   355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
              +  N    +NRA  +     F  AE+DC  AI LD K VKAY+RR   R  L  + EA+
Sbjct:   157 ADPYNPVPPTNRATCFYRLKKFAVAESDCNLAIALDSKYVKAYIRRAATRTALEKHPEAL 216

Query:   415 EDFSYALVLEPTN 427
             ED+   L L+P N
Sbjct:   217 EDYEMVLKLDPGN 229

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1RM25 PPP5C "Serine/threonine-protein phosphatase" [Sus scrofa (taxid:9823)]

 Score = 221 (82.9 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 44/115 (38%), Positives = 68/115 (59%)

Query:   326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
             AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A AD T+
Sbjct:    28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALADATR 87

Query:   386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
             AI +DKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct:    88 AIEMDKKYIKGYYRRAASNMALGKFRAALRDYQTVVKVKPHDKDAKMKYQECNKI 142

GO:0043278 "response to morphine" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1N719 PPP5C "Serine/threonine-protein phosphatase" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 43/115 (37%), Positives = 68/115 (59%)

Query:   326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
             AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A AD T+
Sbjct:    28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALADATR 87

Query:   386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
             A+ +DKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct:    88 AVEMDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 142

GO:0043278 "response to morphine" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVH5	OE64C_ARATH	No assigned EC number	0.6993	0.9932	0.7453	yes	no
Q9MUK5	TOC64_PEA	No assigned EC number	0.7087	0.9638	0.7183	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
PLN02722	422	PLN02722, PLN02722, indole-3-acetamide amidohydrol	1e-134
PRK08310	395	PRK08310, PRK08310, amidase; Provisional	1e-73
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	1e-39
pfam01425	431	pfam01425, Amidase, Amidase	4e-36
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	5e-30
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	2e-25
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-23
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	3e-23
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	4e-22
PRK08186	600	PRK08186, PRK08186, allophanate hydrolase; Provisi	4e-21
PRK06102	452	PRK06102, PRK06102, hypothetical protein; Provisio	8e-21
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	1e-20
TIGR02713	561	TIGR02713, allophanate_hyd, allophanate hydrolase	3e-20
PRK07056	454	PRK07056, PRK07056, amidase; Provisional	1e-19
PRK07139	439	PRK07139, PRK07139, amidase; Provisional	1e-17
PRK07235	502	PRK07235, PRK07235, amidase; Provisional	3e-17
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-17
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-15
PRK06707	536	PRK06707, PRK06707, amidase; Provisional	3e-15
PRK08137	497	PRK08137, PRK08137, amidase; Provisional	6e-15
PRK05962	424	PRK05962, PRK05962, amidase; Validated	2e-14
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-14
PRK06169	466	PRK06169, PRK06169, putative amidase; Provisional	4e-14
PRK06828	491	PRK06828, PRK06828, amidase; Provisional	2e-13
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	6e-13
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-12
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	5e-11
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	9e-11
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	6e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-09
PRK11910	615	PRK11910, PRK11910, amidase; Provisional	1e-09
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	2e-09
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	1e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-07
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	3e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-06
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	4e-05
PRK05962	424	PRK05962, PRK05962, amidase; Validated	8e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	7e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	8e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	8e-04
PRK06565	566	PRK06565, PRK06565, amidase; Validated	9e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	0.001
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.002
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003

>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase

 Score =  393 bits (1010), Expect = e-134
 Identities = 176/315 (55%), Positives = 225/315 (71%), Gaps = 12/315 (3%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGGSSSG+AVAV A LVDFSLG DT G VRVP+++CGI GFRPS+GAVS +G+IP++ S
Sbjct: 108 VPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQS 167

Query: 61  LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
            DTVGWFARDP IL+ VGHVLLQ P      P QIIIA+DCF+L  IP DR+VQV++KS 
Sbjct: 168 FDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSV 227

Query: 121 EKLFGR-QVLKHENLGEYFDSKVPSLKGF-HKTNGE----------LKNVMRLIQRYEFK 168
           EKLFG   ++KH NLG+Y + KVPSLK F  K   E          L + MRL+QRYEFK
Sbjct: 228 EKLFGGGDIVKHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFK 287

Query: 169 NNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP 228
            NH EWI +VKP   P IS  I E +  +E  I+ C+S++ E+R+A+++LL + G+LV P
Sbjct: 288 INHGEWITAVKPEFGPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIP 347

Query: 229 TTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGG 288
           T   PPPKL       E ++ RAFSLLSIA VSG CQV++PLG +D  P SVS +A+HG 
Sbjct: 348 TVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGS 407

Query: 289 DRFLLDTVQNMYASL 303
           D FLL+ V+++Y ++
Sbjct: 408 DGFLLNLVESLYGTI 422

Length = 422

>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional

 Score =  235 bits (602), Expect = 1e-73
 Identities = 100/306 (32%), Positives = 143/306 (46%), Gaps = 21/306 (6%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSSSG+A AVA  L DF+LG DT G VR P++FCG+ G RP++G +S  G++P++ S 
Sbjct: 108 PGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSF 167

Query: 62  DTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTE 121
           DTVGWFARD  +L  VG VLL          ++++I  D F LL       ++  +    
Sbjct: 168 DTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLFALLDPAVRAALEAALARLR 227

Query: 122 KLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELK---NVMRLIQRYEFKNNHNEWIESV 178
              G                    K        L       R++Q  E    H  WI S 
Sbjct: 228 PHLG------------------PAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSG 269

Query: 179 KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 238
            P L P ++       E++   +E  ++ R      +++LL  D +L+ PT     P  G
Sbjct: 270 NPQLGPGVADRFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRG 329

Query: 239 GKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQN 298
                 E Y+ RA  LL IA ++G  Q+++PL   D  P  +S I   G DR LL   Q 
Sbjct: 330 APFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQT 389

Query: 299 MYASLQ 304
           + A+  
Sbjct: 390 IAAARS 395

Length = 395

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score =  148 bits (375), Expect = 1e-39
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 22/309 (7%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A AVAA LV  +LG DT G +R+P+AFCG++G +P+YG VS  G++P+++SL
Sbjct: 154 PGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSL 213

Query: 62  DTVGWFAR---DPKILRHV--GHVLLQLPFAAQRSPRQIIIADDCFELLKI--PADRVVQ 114
           D +G  AR   D  +L  V  G      P          +   D  + L+I  P +    
Sbjct: 214 DQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPALAGKD-LKGLRIGVPKELGGG 272

Query: 115 VVI-KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNE 173
             +       F   V   E  G         L                 +RY  +   + 
Sbjct: 273 GPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDYALAAYYLARFDGERYGLRAA-DL 331

Query: 174 WIESVKPALDPDISAEI--GEMLEISETVIE--NCKSIRNEMRSAISSLLKDDGILVTPT 229
           + ++      P++   I  G  L +S    +    ++ +  +R A   L ++  +L+TPT
Sbjct: 332 YGKTRAEGFGPEVKRRIMLGTYL-LSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVLLTPT 390

Query: 230 TAYPPPKLGGKEMLSED----YQNRAFSLLSIASVSGCCQVTVPLGYYDKC-PTSVSFIA 284
           T  P PK+G  E   +D    Y    F     A+++G   ++VP G+     P  +  I 
Sbjct: 391 TPTPAPKIGESESDGDDPLEMYLLDVF--TVPANLAGLPAISVPAGFTADGLPVGLQLIG 448

Query: 285 RHGGDRFLL 293
               D  LL
Sbjct: 449 PAFDDATLL 457

Length = 475

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score =  137 bits (347), Expect = 4e-36
 Identities = 82/321 (25%), Positives = 131/321 (40%), Gaps = 45/321 (14%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A AVAA LV  ++G DT G +R+P+AFCG++G +P+YG VS  G++P S+SL
Sbjct: 127 PGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPYSSSL 186

Query: 62  DTVGWFAR---------------DPKILRHVGHVLLQLPFAAQRSPRQIIIA---DDCFE 103
           D VG  AR               DP         +       ++S + + I    +D + 
Sbjct: 187 DHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGLRIGVPREDFYF 246

Query: 104 LLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ 163
            L     R V+    + E L G +V   E         +P             N+  L +
Sbjct: 247 SLDPEVQRAVRKAAAALEAL-GHEV--VEVEPPSLKHALPLYYIIAPAEA-SSNLSDLDE 302

Query: 164 RYEFKNNHNEWIESVKPALDPDISA--EIGEMLEISETVIENCKS---IRNEMRSAISSL 218
            Y                L  ++    E+G     +            +R  +R   + L
Sbjct: 303 LYP---------RIRDELLGDEVKRRIELGAYALSAGYSGAYYLKAQKVRRLLRREFAGL 353

Query: 219 LKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI-----ASVSGCCQVTVPLGY- 272
            ++  +L++PTT  P P+LG     ++        L        A+++G   +++P G+ 
Sbjct: 354 FEELDVLLSPTTPTPAPRLG---EAADSPTVLYNLLDFTANTVPANLAGLPAISLPAGFS 410

Query: 273 YDKCPTSVSFIARHGGDRFLL 293
            D  P  +  I   G D  LL
Sbjct: 411 EDGLPVGLQIIGPPGDDETLL 431

Length = 431

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score =  120 bits (304), Expect = 5e-30
 Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 44/327 (13%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A AVAADL  FSLG DT G +R P++FCG++GF+P+YG VS  G++  ++SL
Sbjct: 136 PGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSL 195

Query: 62  DTVGWFARDPKILRHVGHVL----LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVI 117
           D +G FAR  + +  +  V+     +   +A+    +       FE LK     +   V+
Sbjct: 196 DQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEF------FEELKKDLKGLKVGVV 249

Query: 118 KSTEKLFGRQVLK-HENLGEYFDSKVPSLKGFHKTNGELKNVM---RLIQRYEFKNNH-- 171
           K   +   ++V +  EN  E  +     +         +K  +    +I   E  +N   
Sbjct: 250 KEFSEEMDKEVQEKFENALEVLEELGAEIVEVSF--PHVKYALPIYYIISPSEASSNLAR 307

Query: 172 -------------NEWIESVKPALDPDISAE------IGEML---EISETVIENCKSIRN 209
                        N   E            E      +G         +      + +R 
Sbjct: 308 YDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRT 367

Query: 210 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI-ASVSGCCQVTV 268
            +      L ++  ++V+PT    P K+G  E L +  +     +L++ A+++G   ++V
Sbjct: 368 LIIDDFLKLFEEVDVIVSPTAPTLPFKIG--EKLDDPLEMYLSDILTVPANLAGLPAISV 425

Query: 269 PLGYYDK-CPTSVSFIARHGGDRFLLD 294
           P G  +K  P  +  I +   D+ LL 
Sbjct: 426 PCGVKEKGLPIGLQIIGKCFDDKTLLQ 452

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score =  107 bits (270), Expect = 2e-25
 Identities = 38/69 (55%), Positives = 50/69 (72%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A AVAA L   +LG DT G +R P+AFCG++G +P+YG VS  G+I  ++SL
Sbjct: 136 PGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSL 195

Query: 62  DTVGWFARD 70
           D +G FAR 
Sbjct: 196 DQIGPFART 204

Length = 459

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 94.0 bits (234), Expect = 2e-23
 Identities = 40/100 (40%), Positives = 57/100 (57%)

Query: 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386
           E     GN  YK   + +A+ +Y +A++L+ +NA  Y N AAAY + G + +A  D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
           + LD  N KAY   G A   LG Y+EA+E +  AL L+P 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score =  101 bits (254), Expect = 3e-23
 Identities = 47/98 (47%), Positives = 57/98 (58%), Gaps = 4/98 (4%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           + GGSS G+A AVAA LV F+LG DT G +RVP++ CGI G +P+YG +S  G  P   S
Sbjct: 152 IAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVAS 211

Query: 61  LDTVGWFARDPKILRHVGHVL----LQLPFAAQRSPRQ 94
           LD +G FAR    L  V  VL     Q PF A R    
Sbjct: 212 LDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEP 249

Length = 465

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score = 98.1 bits (245), Expect = 4e-22
 Identities = 37/69 (53%), Positives = 46/69 (66%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           + GGSS G A AVAA L    LG DT G VR+P+A CG++G RP+ G  S  G++PIS +
Sbjct: 153 IAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHT 212

Query: 61  LDTVGWFAR 69
            DTVG  AR
Sbjct: 213 RDTVGPIAR 221

Length = 472

>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional

 Score = 95.7 bits (239), Expect = 4e-21
 Identities = 36/69 (52%), Positives = 46/69 (66%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
            GGSSSG+AVAVA  LV F+LG DT G  RVP+AF  I+G +P+ G +S  G++P   +L
Sbjct: 148 SGGSSSGSAVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTL 207

Query: 62  DTVGWFARD 70
           D V  FA  
Sbjct: 208 DCVSVFALT 216

Length = 600

>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional

 Score = 93.9 bits (234), Expect = 8e-21
 Identities = 80/319 (25%), Positives = 127/319 (39%), Gaps = 57/319 (17%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSSSG+AVAVAA LV  ++G DT G VR+P+AF G++G++ + G  S  G+ P++ SL
Sbjct: 153 PGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSL 212

Query: 62  DTVGWFAR--------DPKILRHVGHVLLQLPFAAQR--SPRQIIIADDCFELLKIPADR 111
           D++G   R        D  +       +++ P A  R   P  ++   D  E    P   
Sbjct: 213 DSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAGLRLVVPETVV--FDDAE----PG-- 264

Query: 112 VVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY------ 165
           V      + E+L     L             P+ +           ++ LI R+      
Sbjct: 265 VRAAFEAAVERLQAAGALVER-------QAFPAFQE----------ILDLIARHGWLVTA 307

Query: 166 EFKNNHNEWIESVKPA-LDPDISA--EIGEMLEISETVIENCKSIRNEMRSAISSLLKDD 222
           E    H E ++    A +DP +     +G  +  S+ +       R  + + ++  L   
Sbjct: 308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYI--ALLEARERLIAQVTREL-GG 364

Query: 223 GILVTPTTAYPPPKLGGKEMLSEDYQ------NRAFSLLSIASVSGCCQVTVPLGYYDK- 275
            +L TPT A+  P L     L  D         +        +    C V++P G     
Sbjct: 365 ALLATPTVAHVAPPLAP---LEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAG 421

Query: 276 CPTSVSFIARHGGDRFLLD 294
            P  +   A  G D  LL 
Sbjct: 422 MPVGLLLSAPAGRDERLLR 440

Length = 452

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 39/69 (56%), Positives = 49/69 (71%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           + GGSS G+A AVAA LV FSLG DT G +RVP++ CG+ G +P+YG +S  G+ P   S
Sbjct: 145 IAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVAS 204

Query: 61  LDTVGWFAR 69
           LD VG FAR
Sbjct: 205 LDHVGPFAR 213

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
            GGSSSG+AVAVA  LV F+LG DT G  RVP+A   I+G +P+ G VS  G++P   SL
Sbjct: 111 SGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSL 170

Query: 62  DTVGWFARD----PKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVI 117
           D V  FA       ++LR       + P++                L + P    V V  
Sbjct: 171 DCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAA---------LRRFPPPPRVGVPR 221

Query: 118 KSTEKLFG 125
            +  + FG
Sbjct: 222 AAQLEFFG 229

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase [Central intermediary metabolism, Nitrogen metabolism]. Length = 561

>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 35/68 (51%), Positives = 49/68 (72%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSSSGAAV+VA  +   +LG DT G +R+P+A CG+ GF+P+   V   G +P+ST+L
Sbjct: 157 PGGSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTL 216

Query: 62  DTVGWFAR 69
           D++G  AR
Sbjct: 217 DSIGPLAR 224

Length = 454

>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 4/80 (5%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           + GGSSSG+A A     + F++G DT   VR+P++F G +GF+PSYGA+S  G+   ++S
Sbjct: 116 LVGGSSSGSA-ATFNKNISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASS 174

Query: 61  LDTVGWFAR---DPKILRHV 77
           LDTV +F     D  IL  V
Sbjct: 175 LDTVAYFTHNVNDAIILSKV 194

Length = 439

>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional

 Score = 83.5 bits (207), Expect = 3e-17
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
             GGSSSG+A  VAA  VD ++G D  G +R+PSA+CGI G +P++G V + G  PI  +
Sbjct: 167 SAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERT 226

Query: 61  LDTVGWFAR 69
           +D +G    
Sbjct: 227 IDHLGPMTA 235

Length = 502

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 75.0 bits (185), Expect = 4e-17
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEAD 382
            +AE  K  GN  +K   + +AI  Y +A++L+ +NA  Y N A AYL+ G  + +A  D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 383 CTKAINLDK 391
             KA+ LD 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 78.9 bits (194), Expect = 1e-15
 Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 361
              E  +I   S  + +   +K+ A   KEKGN+AY++K + KAI  Y++AI+    +  
Sbjct: 103 PADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPV 161

Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
           YYSNRAA +   G + +   D T A+ LD    KA  RR  A + LG Y +A+ D + + 
Sbjct: 162 YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221

Query: 422 VLEPTNKRASLSA-DRLRKVF 441
           +++      S  A +RL K F
Sbjct: 222 IIDGFRNEQSAQAVERLLKKF 242

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional

 Score = 77.3 bits (190), Expect = 3e-15
 Identities = 33/71 (46%), Positives = 44/71 (61%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
             GSSSG+A  VAAD    ++G +T G +  P+A   ++G RPS G VS  GIIP++ +L
Sbjct: 224 TSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETL 283

Query: 62  DTVGWFARDPK 72
           DT G  AR  K
Sbjct: 284 DTAGPMARTVK 294

Length = 536

>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional

 Score = 76.3 bits (188), Expect = 6e-15
 Identities = 32/68 (47%), Positives = 43/68 (63%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           P GSSSG+  AVAA L   ++G +T G +  P+A  G++G +P+ G VS  GI+PIS S 
Sbjct: 159 PCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQ 218

Query: 62  DTVGWFAR 69
           DT G   R
Sbjct: 219 DTAGPMTR 226

Length = 497

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 33/69 (47%), Positives = 48/69 (69%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGGSSSGAAV+VA    + ++G DT G VR+P+A  G++GF+P+   +   G  P+S S
Sbjct: 126 IPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPS 185

Query: 61  LDTVGWFAR 69
           LD++G  AR
Sbjct: 186 LDSIGPLAR 194

Length = 424

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 41/104 (39%), Positives = 59/104 (56%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           A+  ++K  +A+ D  +  A+  YT+AI L+ NNA  Y++RA A ++ G+F +A AD  K
Sbjct: 2   AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61

Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
           AI LD    KAYLR+GTA   L  Y+ A         L P + R
Sbjct: 62  AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105

Length = 356

>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 17/90 (18%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV-----SHMGII- 55
            GGSS GAA AVA  +   S+G D  G VR+P++FCG  GF+P++G V     S  G + 
Sbjct: 153 AGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFGTLA 212

Query: 56  ---PISTS-------LDTVGWF-ARDPKIL 74
              P++ +       LD +    ARD   L
Sbjct: 213 HVGPMTRTVADAALLLDVIARPDARDWSAL 242

Length = 466

>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
            GGSS+G+A+AVAA+    S+G +T G +  P+    ++G +P+ G +S  GIIP + S 
Sbjct: 169 VGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQ 228

Query: 62  DTVGWFAR---DPKIL 74
           DT G FAR   D  IL
Sbjct: 229 DTAGPFARTVTDAAIL 244

Length = 491

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 78/329 (23%), Positives = 124/329 (37%), Gaps = 57/329 (17%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A AVAA L   +LG D  G +R+PS +CG+ G +P    +S          L
Sbjct: 152 PGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGL 211

Query: 62  DTVGWFAR---DPKILRHVGHVL--LQLPF--AAQRSPRQIIIADDCFELLKIPADRVVQ 114
              G  AR   D  +L      +   +  F  AA R P ++ IA       ++P    V+
Sbjct: 212 SVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAAREPGRLRIALS----TRVPTPLPVR 267

Query: 115 V------VIKSTEKL---FGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 165
                   +     L    G  V+  +   +Y      +   +      L    R I   
Sbjct: 268 CGKQELAAVHQAGALLRDLGHDVVVRDP--DYPA---ATYANY------LPRFFRGISDD 316

Query: 166 EFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL 225
                H + +E+   A+     A +G     S+  +   ++    + + I S+  D  ++
Sbjct: 317 ADAQAHPDRLEARTRAI-----ARLGSF--FSDRRMAALRAAEVVLSARIQSIFDDVDVV 369

Query: 226 VTPTTAYPPPKLGGKEMLSEDYQNRAF--SLLSIASVSGCCQV---------TVPLGY-Y 273
           VTP TA  P ++G        YQ R    +LL +       QV          VP  +  
Sbjct: 370 VTPGTATGPSRIGA-------YQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDG 422

Query: 274 DKCPTSVSFIARHGGDRFLLDTVQNMYAS 302
           D  P SV  + R   +  LL     + ++
Sbjct: 423 DGLPMSVQLVGRPYDEATLLALAAQIESA 451

Length = 462

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIED 416
           +NA    N   A  + G + +A     KA+ LD  N +AY     A   LG  Y+EA+ED
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 417 FSYALVLEP 425
              AL L+P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 19/110 (17%)

Query: 3   GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSH----------- 51
           GGSS GAA A+A  ++  + G D +G +R P+AF  + GFRPS G V H           
Sbjct: 159 GGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQL 218

Query: 52  -----MG--IIPISTSLDT-VGWFARDPKILRHVGHVLLQLPFAAQRSPR 93
                MG  +  ++  L    G+  RDP  L        Q   A  R  R
Sbjct: 219 GTEGPMGRTVEDVALLLAVQAGYDPRDPLSLAEDPARFAQPLEADLRGKR 268

Length = 484

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score = 63.1 bits (154), Expect = 9e-11
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP 56
           PGGSS G+A A+AA     S+G D  G +RVP+ +CG+   +P+ G V   G IP
Sbjct: 156 PGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIP 210

Length = 490

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 24/48 (50%), Positives = 31/48 (64%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 49
           PGGSS+GA  A AA      LG D  G VR+P+ +CGI+G +PS G +
Sbjct: 152 PGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRI 199

Length = 464

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 25/68 (36%), Positives = 34/68 (50%)

Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
             N    Y + G + +A     KA+ LD  N  AY     A   LG Y+EA+ED+  AL 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 423 LEPTNKRA 430
           L+P N +A
Sbjct: 63  LDPDNAKA 70

Length = 100

>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           P GSSSG+A A  +D    ++G +T G +  P++    +G++PS G V++ GIIP+S+  
Sbjct: 315 PSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRF 374

Query: 62  DTVGWFAR 69
           DT G   R
Sbjct: 375 DTPGPLTR 382

Length = 615

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVS 50
           PGGSS G+A AVAA LV  ++G D  G VR+P+A+  ++G +P  G +S
Sbjct: 161 PGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRIS 209

Length = 483

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV-------SHMGI 54
           PGGSS GAA AVAA +   + G D  G +R P+  CG+ G RP+ G V           I
Sbjct: 153 PGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPI 212

Query: 55  IPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPR 93
                S        + P + R V  + L L   A   PR
Sbjct: 213 GAQLMS-------VQGP-LARTVADLRLALAAMAAPDPR 243

Length = 469

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 55.2 bits (131), Expect = 2e-08
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEA 381
            + AE     G       ++ +A+    +A+KLN ++ A    N    YL+ G + +A  
Sbjct: 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
              KA+ LD  N +A          LG Y+EA+E    AL L+P
Sbjct: 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 337 YKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
           Y+   + +A+  Y +A++L+      A       A     G + +A     KA+ L+  +
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 394 -VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             +A L  G     LG Y+EA+E +  AL L+P N  A
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238

Length = 291

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 19/97 (19%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYG------AVSHMGII 55
            G SS G+A  VAA +V  +   D  G +R+P+A CG++G +PS G       +  + + 
Sbjct: 154 AGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVN 213

Query: 56  PIS------TSLDTVGWFA------RDPKILRHVGHV 80
            ++      T  DT  ++       R+PK L  +G V
Sbjct: 214 IVANGVLTRTVRDTAAFYREAERYYRNPK-LPPIGDV 249

Length = 468

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 4/154 (2%)

Query: 283 IARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW 342
           +  +     LL  +      L    +     + +         AE     G       ++
Sbjct: 52  LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111

Query: 343 LKAISFYTEAIKLNGNNATYYSNRA-AAYLESGSFLQAEADCTKAINLDKKN---VKAYL 398
            +A+    +A+ L+ +     +  A  A  E G + +A     KA+ LD +     +A L
Sbjct: 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171

Query: 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
             G   E LG Y+EA+E    AL L P +   +L
Sbjct: 172 ALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 29/96 (30%), Positives = 44/96 (45%)

Query: 338 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397
           +  +  +AI+  + A+ L+ ++    S    AYL  G F +A     KA  LD +N  A 
Sbjct: 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400

Query: 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433
            + G ++   G   EAI D   A  L+P   RA L 
Sbjct: 401 TQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 3   GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 49
           GGSS GAA  V++ +V  +   D  G +R+P++F G++G +PS G +
Sbjct: 145 GGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRI 191

Length = 482

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 171 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 230
           H +W+  +   +D  +   +   +++           R  +  A+   L    +   P T
Sbjct: 287 HADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPAT 346

Query: 231 AYPPPKLGGKEMLSEDYQNRAFSLL----SIASVSGCCQVTVPLGYYDKCPTSVSFIARH 286
               P +       E+Y +R  +LL     +A+    C +T+P+      P  +   AR+
Sbjct: 347 PIVAPTIASVSEDEEEY-DRVENLLLRNTQVANQFDLCSITLPMPGM-ALPAGLMLTARN 404

Query: 287 GGDRFLLDTVQNMYASLQE 305
           G DR LL    ++   L+ 
Sbjct: 405 GSDRRLLAAAASVEKLLEH 423

Length = 424

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 24/62 (38%)

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            A A L +G + +A A    A+       +A L  G A    G   EA      AL  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 426 TN 427
            +
Sbjct: 63  DD 64

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            KA    G A   LG Y EA+E +  AL L P N
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 21/78 (26%), Positives = 37/78 (47%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
           KA   + +A+KLN  +   Y +RA  +   G F QA  D  K+I+LD   + ++++ G  
Sbjct: 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442

Query: 404 REMLGYYKEAIEDFSYAL 421
           +   G    ++  F    
Sbjct: 443 QYKEGSIASSMATFRRCK 460

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 321 NQKQSAEIAKEKGN---QAYKDKQWLKAISFYTEAI----------KLNGNNATYYSNRA 367
             + S E+ +E GN   Q        KA   Y EA           KL    A   + R 
Sbjct: 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338

Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
                 G  L+A AD +K+I LD +  ++Y++R +    LG   +A EDF  AL L   +
Sbjct: 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 4   GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 63
           GSS+GA  A AA    F L  +T    R P++  G+  + PS G +S  G  P++ ++D 
Sbjct: 161 GSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDV 220

Query: 64  VGWFAR 69
           V  +AR
Sbjct: 221 VVPYAR 226

Length = 566

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 22/155 (14%)

Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 351
           LLD  ++++  L ++ + A  +         +Q   I +         ++W KAI     
Sbjct: 122 LLDRAEDIFNQLVDEGEFAEGAL--------QQLLNIYQ-------ATREWEKAIDVAER 166

Query: 352 AIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406
            +KL G       A +Y   A   L S    +A     KA+  DKK V+A +  G     
Sbjct: 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226

Query: 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441
            G Y++A+E  +   VLE   +  S   + L + +
Sbjct: 227 KGDYQKAVE--ALERVLEQNPEYLSEVLEMLYECY 259

Length = 389

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.2 bits (92), Expect = 0.002
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAE 380
            ++  + +          +  +A+    EA++L  N + A      A A L+ G   +A 
Sbjct: 20  AEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEAL 79

Query: 381 ADCTKAIN--LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
               KA+   L     +A L  G   E LG Y+EA+E    AL L+P    A
Sbjct: 80  ELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131

Length = 291

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 11/60 (18%), Positives = 19/60 (31%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
                A +   + +A++    A+      A        A L  G   +A A    A+  D
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            +A    G A   LG Y+EA+E +  AL L+P N
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTAREMLGYYKE 412
           A   +N A      G + +A     KA+ L ++         +A          LG Y E
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 413 AIEDFSYAL 421
           A+E    AL
Sbjct: 65  ALEYLEKAL 73

Length = 78

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402
           L+A++  +++I+L+      Y  RA+  LE G   +AE D  KA+ L+ ++   Y  R  
Sbjct: 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407

Query: 403 AREMLGYYKEAIEDFSYALVLEPTN 427
              + G + +A +D+  ++ L+P  
Sbjct: 408 LHFIKGEFAQAGKDYQKSIDLDPDF 432

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
PLN02722	422	indole-3-acetamide amidohydrolase	100.0
PRK08310	395	amidase; Provisional	100.0
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	100.0
PRK07056	454	amidase; Provisional	100.0
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	100.0
PRK09201	465	amidase; Provisional	100.0
PRK06102	452	hypothetical protein; Provisional	100.0
PRK07235	502	amidase; Provisional	100.0
PRK05962	424	amidase; Validated	100.0
PRK06169	466	putative amidase; Provisional	100.0
PRK07488	472	indole acetimide hydrolase; Validated	100.0
PRK07487	469	amidase; Provisional	100.0
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	100.0
PRK07486	484	amidase; Provisional	100.0
PRK08186	600	allophanate hydrolase; Provisional	100.0
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	100.0
PRK06061	483	amidase; Provisional	100.0
PRK06170	490	amidase; Provisional	100.0
PRK12470	462	amidase; Provisional	100.0
PRK07139	439	amidase; Provisional	100.0
PRK07042	464	amidase; Provisional	100.0
PRK08137	497	amidase; Provisional	100.0
PRK06529	482	amidase; Provisional	100.0
PRK07869	468	amidase; Provisional	100.0
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	100.0
PRK06828	491	amidase; Provisional	100.0
PRK11910	615	amidase; Provisional	100.0
PRK06707	536	amidase; Provisional	100.0
PRK06565	566	amidase; Validated	100.0
KOG1211	506	consensus Amidases [Translation, ribosomal structu	100.0
KOG1212	560	consensus Amidases [Translation, ribosomal structu	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.78
PRK15359	144	type III secretion system chaperone protein SscB;	99.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.65
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.63
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.57
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.52
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.52
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.51
PRK11189	296	lipoprotein NlpI; Provisional	99.5
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.43
KOG1126	638	consensus DNA-binding cell division cycle control	99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.41
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.38
PRK15331	165	chaperone protein SicA; Provisional	99.37
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.37
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.37
KOG4234	271	consensus TPR repeat-containing protein [General f	99.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.36
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.34
PLN02789	320	farnesyltranstransferase	99.32
PRK12370	553	invasion protein regulator; Provisional	99.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.32
PRK12370	553	invasion protein regulator; Provisional	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.31
PRK10803	263	tol-pal system protein YbgF; Provisional	99.31
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.3
KOG1126	638	consensus DNA-binding cell division cycle control	99.3
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.3
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.29
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.28
KOG1125	579	consensus TPR repeat-containing protein [General f	99.28
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.27
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.27
PRK15359	144	type III secretion system chaperone protein SscB;	99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.25
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.24
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.23
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.23
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.22
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.21
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.2
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.2
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.2
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.18
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.18
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.15
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.14
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.13
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.11
PLN02789	320	farnesyltranstransferase	99.11
KOG0553	304	consensus TPR repeat-containing protein [General f	99.11
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.1
PF13512	142	TPR_18: Tetratricopeptide repeat	99.09
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.09
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.08
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.08
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.07
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.06
KOG2076	895	consensus RNA polymerase III transcription factor	99.05
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.04
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.02
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.02
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.01
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.01
PF13371	73	TPR_9: Tetratricopeptide repeat	98.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.98
KOG1129	478	consensus TPR repeat-containing protein [General f	98.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.97
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.97
KOG1125	579	consensus TPR repeat-containing protein [General f	98.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.93
PF12688	120	TPR_5: Tetratrico peptide repeat	98.92
PF13371	73	TPR_9: Tetratricopeptide repeat	98.92
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.91
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.91
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.9
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.9
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.89
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.88
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.88
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.85
KOG4555	175	consensus TPR repeat-containing protein [Function	98.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.85
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.82
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.81
PRK14574	822	hmsH outer membrane protein; Provisional	98.8
KOG2076	895	consensus RNA polymerase III transcription factor	98.8
PRK11906	458	transcriptional regulator; Provisional	98.76
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.75
KOG2003	840	consensus TPR repeat-containing protein [General f	98.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.73
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.7
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.7
PRK14574	822	hmsH outer membrane protein; Provisional	98.7
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.7
KOG1129	478	consensus TPR repeat-containing protein [General f	98.67
KOG2003	840	consensus TPR repeat-containing protein [General f	98.65
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.64
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.63
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.62
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.61
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.61
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.61
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.59
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.59
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.59
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.57
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.52
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.52
PRK11906	458	transcriptional regulator; Provisional	98.52
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.47
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.46
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.45
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.44
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.43
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.43
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.42
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.42
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.41
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.4
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.39
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.35
PRK15331	165	chaperone protein SicA; Provisional	98.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.31
PF13428	44	TPR_14: Tetratricopeptide repeat	98.31
PF13428	44	TPR_14: Tetratricopeptide repeat	98.3
KOG4234	271	consensus TPR repeat-containing protein [General f	98.3
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.29
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.27
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.25
PF12688	120	TPR_5: Tetratrico peptide repeat	98.22
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.21
PF13431	34	TPR_17: Tetratricopeptide repeat	98.17
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.17
PRK10803	263	tol-pal system protein YbgF; Provisional	98.16
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.15
PF13512	142	TPR_18: Tetratricopeptide repeat	98.15
PF13431	34	TPR_17: Tetratricopeptide repeat	98.13
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.04
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.03
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.03
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.96
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.96
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.91
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.86
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.85
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.84
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.84
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.83
KOG1310	758	consensus WD40 repeat protein [General function pr	97.82
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.8
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.8
KOG3364	149	consensus Membrane protein involved in organellar	97.79
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.78
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.77
KOG2471	696	consensus TPR repeat-containing protein [General f	97.72
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.69
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.65
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.65
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.64
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.62
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.6
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.59
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.59
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.54
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.54
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.52
PRK10941	269	hypothetical protein; Provisional	97.5
KOG1586	288	consensus Protein required for fusion of vesicles	97.47
PRK10941	269	hypothetical protein; Provisional	97.42
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.41
KOG4555	175	consensus TPR repeat-containing protein [Function	97.39
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.38
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.37
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.36
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.35
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.35
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.34
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.34
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.34
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.33
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.32
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.31
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.3
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.23
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.23
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.21
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.17
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.14
PLN03218	1060	maturation of RBCL 1; Provisional	97.11
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.11
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.09
KOG1585	308	consensus Protein required for fusion of vesicles	97.08
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.07
PLN03218	1060	maturation of RBCL 1; Provisional	97.06
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.05
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.99
KOG1586	288	consensus Protein required for fusion of vesicles	96.95
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.94
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.92
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.9
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.87
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.86
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.85
KOG2471	696	consensus TPR repeat-containing protein [General f	96.8
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.78
PLN03077	857	Protein ECB2; Provisional	96.76
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.74
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.68
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.67
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.63
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.57
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.55
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.53
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.51
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.44
PRK04841	903	transcriptional regulator MalT; Provisional	96.39
KOG3364	149	consensus Membrane protein involved in organellar	96.37
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.34
PLN03077	857	Protein ECB2; Provisional	96.3
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.28
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.19
PRK04841	903	transcriptional regulator MalT; Provisional	96.17
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.16
KOG1585	308	consensus Protein required for fusion of vesicles	96.09
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.06
COG2912	269	Uncharacterized conserved protein [Function unknow	95.99
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.85
COG2912	269	Uncharacterized conserved protein [Function unknow	95.71
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.69
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.65
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.63
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.62
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.46
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.3
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.3
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.28
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.27
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.25
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.06
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.95
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.89
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.87
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.8
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.79
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.72
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.54
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.53
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.42
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.42
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.36
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.33
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.26
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.23
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.14
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.03
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.99
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.88
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.81
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.75
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.51
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.48
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	93.33
KOG2581	493	consensus 26S proteasome regulatory complex, subun	93.29
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.15
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.1
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.08
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.95
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.87
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.84
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.59
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.55
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.53
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.43
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.36
COG3947	361	Response regulator containing CheY-like receiver a	92.09
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.07
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.96
KOG1258	577	consensus mRNA processing protein [RNA processing	91.94
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.81
KOG2300	629	consensus Uncharacterized conserved protein [Funct	91.71
COG3947	361	Response regulator containing CheY-like receiver a	91.67
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.66
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.59
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.46
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	91.39
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.9
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	90.8
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.62
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.26
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.04
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.9
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.89
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.65
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.56
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.47
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	89.1
KOG1310	758	consensus WD40 repeat protein [General function pr	89.0
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.0
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.91
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.83
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	88.82
KOG4814	872	consensus Uncharacterized conserved protein [Funct	88.82
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.79
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	88.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	88.12
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.97
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.94
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.77
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.24
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.04
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.38
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.15
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	81.91
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.85
PF10858	220	DUF2659: Protein of unknown function (DUF2659); In	81.77
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	81.72
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.67
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.5
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	81.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	81.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	80.81
KOG3783	546	consensus Uncharacterized conserved protein [Funct	80.7
PHA02537	230	M terminase endonuclease subunit; Provisional	80.16

>PLN02722 indole-3-acetamide amidohydrolase

Probab=100.00  E-value=9.8e-59  Score=435.03  Aligned_cols=301  Identities=58%  Similarity=0.978  Sum_probs=241.7

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++|+|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       108 ~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~~G~~pla~sld~~G~~ar~v~D~a~~~~~  187 (422)
T PLN02722        108 VPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVILKRVGHV  187 (422)
T ss_pred             CCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCCCCCCcccCCCCcccceeCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccc-cccccccccccccCCchhhhhc---------
Q 013459           81 LLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV-LKHENLGEYFDSKVPSLKGFHK---------  150 (442)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~~~~~~~~~~~~~p~~~~~~~---------  150 (442)
                      +.+.+..+...+.||++..+.+.......+++.+.+.++++.+.+.+. ++.++++..++...+.+..+..         
T Consensus       188 l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  267 (422)
T PLN02722        188 LLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVNLGDYVEDKVPSLKHFMSKEIKEQEYN  267 (422)
T ss_pred             HcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCeeeecchhHHHHHhHHHHHHHhhcccccceec
Confidence            998776666677888887654321122346677888888888774432 2333332222222222211100         


Q ss_pred             --cchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEee
Q 013459          151 --TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP  228 (442)
Q Consensus       151 --~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~P  228 (442)
                        ........+..+..+|....+..++....+.+++.+++++..+..++..+|.++++.|.++++.+.++|+++|+||+|
T Consensus       268 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~P  347 (422)
T PLN02722        268 IPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIP  347 (422)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence              001122344446666777778888887778899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHH
Q 013459          229 TTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA  301 (442)
Q Consensus       229 t~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~  301 (442)
                      |+|.+||+++........+...++.+|.++|++|+|+++||++..+|+|+|+|+++++++|..++.++..+..
T Consensus       348 t~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~l~~  420 (422)
T PLN02722        348 TVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYG  420 (422)
T ss_pred             CCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCEEEEEECCCCChHHHHHHHHHHHh
Confidence            9999999886432222334445567899999999999999999888999999999999999999999987754

>PRK08310 amidase; Provisional

Probab=100.00  E-value=1.9e-56  Score=418.79  Aligned_cols=285  Identities=35%  Similarity=0.564  Sum_probs=232.5

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+.|.++++|++||||||++|++.++++
T Consensus       107 ~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~~~d~~Gp~arsv~D~~~~~~~  186 (395)
T PRK08310        107 VPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLERVGEV  186 (395)
T ss_pred             CCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCCCCcccccCCCeeeeeeCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhc--ccccccccccccccccCCchhhhhccchhHHHH
Q 013459           81 LLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV  158 (442)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  158 (442)
                      +.+.+..+...+++|++..+..   ...++++.++++++++.|+.  ..++ +++..      ...+..       +...
T Consensus       187 l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv-~~~~~------~~~~~~-------~~~~  249 (395)
T PRK08310        187 LLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAK-PASVP------PLSLDE-------WYEA  249 (395)
T ss_pred             HcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCcee-eecCC------cccHHH-------HHHH
Confidence            9876544434457888776543   23567899999999999863  2221 11110      001111       2223


Q ss_pred             HHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCC
Q 013459          159 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG  238 (442)
Q Consensus       159 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~  238 (442)
                      +..+...+....+..+.......+.+.++.++..+..++..+|.++.+.|+.+++.+.++|+++|+||+||++.+||+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~  329 (395)
T PRK08310        250 FRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRG  329 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCC
Confidence            33344445555666677666777999999999988889999999999999999999999999999999999999999887


Q ss_pred             CCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459          239 GKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       239 ~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      ........+...++.||.++|++|+|+++||++..+|+|+|+|++++++.|..+++++..+++.
T Consensus       330 ~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~~lL~~a~~le~~  393 (395)
T PRK08310        330 APFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQTIAAA  393 (395)
T ss_pred             CccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHhh
Confidence            5432222333344568999999999999999997799999999999999999999999998764

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-56  Score=424.36  Aligned_cols=289  Identities=26%  Similarity=0.328  Sum_probs=227.8

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+|||||||||||||+||||+.|++|.++++|++|||||||+|+++++++
T Consensus       153 ~pGGSSgGSAaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v  232 (475)
T COG0154         153 VPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDV  232 (475)
T ss_pred             CCCcCchHHHHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459           81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV  142 (442)
Q Consensus        81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~  142 (442)
                      +.+.+..+                ...+.||+++.++... .+..+++.+++.++++.|+  |+.+ .++.        +
T Consensus       233 ~~g~D~~d~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v-~~v~--------l  302 (475)
T COG0154         233 IAGPDPRDSPLPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEV-VEVS--------L  302 (475)
T ss_pred             HcCCCCcccccccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEE-Eecc--------C
Confidence            99865442                1234578888776542 2345689999999999997  4444 2222        3


Q ss_pred             CchhhhhccchhHHHHHH-HHHHHHHHHhhH-H-HHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHH---HHHHH
Q 013459          143 PSLKGFHKTNGELKNVMR-LIQRYEFKNNHN-E-WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAIS  216 (442)
Q Consensus       143 p~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~---~~~~~  216 (442)
                      |.+....     ....++ .......+.... . +.......+++++++++..+...+..+|.++...|...   ++.+.
T Consensus       303 p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~  377 (475)
T COG0154         303 PLLSDDY-----ALAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFD  377 (475)
T ss_pred             Cchhhhh-----hhhHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3211100     111111 011111111111 1 45556677999999999999999999999999888555   99999


Q ss_pred             hhccCCCEEEeeCCCCCCCCCCC-CC-cccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHH
Q 013459          217 SLLKDDGILVTPTTAYPPPKLGG-KE-MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL  293 (442)
Q Consensus       217 ~~~~~~d~li~Pt~~~~a~~~~~-~~-~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll  293 (442)
                      ++|.++|+||+||+|.+||+++. .. .........+..+|.++|++|+|+++||+|.. +|||+|+|+++++++|..++
T Consensus       378 ~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL  457 (475)
T COG0154         378 KLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLL  457 (475)
T ss_pred             HHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHH
Confidence            99999999999999999999987 21 12222333344689999999999999999998 59999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 013459          294 DTVQNMYASLQ  304 (442)
Q Consensus       294 ~~~~~~~~~~~  304 (442)
                      +++..+++...
T Consensus       458 ~~a~~~E~~~~  468 (475)
T COG0154         458 RLAAALEQALG  468 (475)
T ss_pred             HHHHHHHHhhC
Confidence            99999988654

>PRK07056 amidase; Provisional

Probab=100.00  E-value=1.7e-55  Score=419.80  Aligned_cols=287  Identities=24%  Similarity=0.328  Sum_probs=230.5

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       156 ~~GGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~v  235 (454)
T PRK07056        156 IPGGSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAV  235 (454)
T ss_pred             CCCCcchHHHHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccC----CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchh
Q 013459           81 LLQLPFAAQ----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE  154 (442)
Q Consensus        81 ~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  154 (442)
                      +.+.++.++    ..+.||++..+++.  ...++++.++++++++.|+  |+.+ ++++        +|.+.....    
T Consensus       236 l~g~d~~d~~~~~~~~lrig~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v-~~~~--------~~~~~~~~~----  300 (454)
T PRK07056        236 LAGEEPVVPAARPLEGLRLAVPTTVVL--DGLDATVAAAFERALKRLSAAGAII-EEIA--------FPELAELAE----  300 (454)
T ss_pred             hcCCCCCCcccccccCcEEEEcchhhc--cCCCHHHHHHHHHHHHHHHHCCCEE-EEec--------CcchHHHHH----
Confidence            987654432    34578888765431  2356889999999999997  4443 2222        222211100    


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCC
Q 013459          155 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP  234 (442)
Q Consensus       155 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a  234 (442)
                      +. ....+...|....+..++......+.+.++.++..+..++..+|.++++.|..+++.|.++|.++|+||+||++.+|
T Consensus       301 ~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a  379 (454)
T PRK07056        301 IN-AKGGFSAAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVP  379 (454)
T ss_pred             HH-HhhhHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCC
Confidence            10 01112334444445556666667889999999998888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccHHHHH---HHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          235 PKLGGKEMLSEDYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       235 ~~~~~~~~~~~~~~~---~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      |+++........+..   .++.||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+++.+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l  451 (454)
T PRK07056        380 PRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVL  451 (454)
T ss_pred             CCcccccccchhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            988653211222211   233579999999999999999987899999999999999999999999998765

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=100.00  E-value=1.3e-55  Score=420.94  Aligned_cols=282  Identities=26%  Similarity=0.364  Sum_probs=227.2

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+|||||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       145 ~~GGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~  224 (452)
T TIGR02715       145 IAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDV  224 (452)
T ss_pred             CCCcchHHHHHHHHCCCCceEEeeCCCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccccccccccccccccCC
Q 013459           81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVP  143 (442)
Q Consensus        81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~~~~~~p  143 (442)
                      +.+.+..+                 ...+.||++..+++.  ...++++.++++++++.|.....   ++        .|
T Consensus       225 l~g~~~~d~~~~~~p~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~~~---v~--------~~  291 (452)
T TIGR02715       225 MQGPDPQDPFCTDRPAEPTVPLLPAGISGLRIAVLGGWFQ--QNADPEALAAVGRVAKALGATTI---VE--------LP  291 (452)
T ss_pred             hcCCCCCCcccccCCCcchhhhhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHhcCCeee---ec--------CC
Confidence            98653221                 124568888765542  23567899999999998842211   11        12


Q ss_pred             chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013459          144 SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDG  223 (442)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d  223 (442)
                      ....       ....+..+...|....+..++......+.+.++.++..+..++..+|.++++.|+.+++.|.++|+++|
T Consensus       292 ~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  364 (452)
T TIGR02715       292 DAER-------ARAAAFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVD  364 (452)
T ss_pred             chHH-------HHHHHHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2110       112223344445555556666666677999999999888888999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCC----cccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHH
Q 013459          224 ILVTPTTAYPPPKLGGKE----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM  299 (442)
Q Consensus       224 ~li~Pt~~~~a~~~~~~~----~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~  299 (442)
                      +||+||++.+||+++...    .....+...+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+
T Consensus       365 vll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~l  444 (452)
T TIGR02715       365 VLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVL  444 (452)
T ss_pred             EEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            999999999999886421    1111122234458999999999999999998889999999999999999999999998


Q ss_pred             HHH
Q 013459          300 YAS  302 (442)
Q Consensus       300 ~~~  302 (442)
                      ++.
T Consensus       445 e~~  447 (452)
T TIGR02715       445 ERQ  447 (452)
T ss_pred             HHh
Confidence            763

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK09201 amidase; Provisional

Probab=100.00  E-value=1.5e-55  Score=421.41  Aligned_cols=282  Identities=27%  Similarity=0.343  Sum_probs=227.8

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       152 ~pGGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~  231 (465)
T PRK09201        152 IAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDV  231 (465)
T ss_pred             CCCcchHHHHHHHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccC-----------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccccccccccccccccCC
Q 013459           81 LLQLPFAAQ-----------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVP  143 (442)
Q Consensus        81 ~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~~~~~~p  143 (442)
                      +.+.+..+.                 ..+.||++..+++.  ...++++.++++++++.|....   .+++        |
T Consensus       232 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~~---~v~~--------~  298 (465)
T PRK09201        232 LQGPDPQDPFQADRPAEPTAPLLDRGAEGLRIAVLGGYFA--QWADPEARAAVDRVAKALGATR---EVEL--------P  298 (465)
T ss_pred             hcCCCCCCcccccCCCcchhhhhccCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHccCce---eecC--------C
Confidence            986542221                 23467888765542  2356889999999999883211   1111        2


Q ss_pred             chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013459          144 SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDG  223 (442)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d  223 (442)
                      ....       ....+..+...|....+..++......++|.++.++..+..++..+|.++++.|+.+++.|.++|+++|
T Consensus       299 ~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  371 (465)
T PRK09201        299 EAAR-------ARAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVD  371 (465)
T ss_pred             chhH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1111       112223344456555566666666677999999999989889999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCC---cc-cHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHH
Q 013459          224 ILVTPTTAYPPPKLGGKE---ML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM  299 (442)
Q Consensus       224 ~li~Pt~~~~a~~~~~~~---~~-~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~  299 (442)
                      +||+||++.++|+++...   .. ...+...+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+
T Consensus       372 ~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~l  451 (465)
T PRK09201        372 VLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAAL  451 (465)
T ss_pred             EEEeCCCCCCCCcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHH
Confidence            999999999999886521   11 11122234468999999999999999997789999999999999999999999988


Q ss_pred             HHH
Q 013459          300 YAS  302 (442)
Q Consensus       300 ~~~  302 (442)
                      ++.
T Consensus       452 e~~  454 (465)
T PRK09201        452 EQQ  454 (465)
T ss_pred             Hhh
Confidence            763

>PRK06102 hypothetical protein; Provisional

Probab=100.00  E-value=2e-55  Score=419.02  Aligned_cols=288  Identities=24%  Similarity=0.337  Sum_probs=226.8

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       152 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~  231 (452)
T PRK06102        152 IPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAA  231 (452)
T ss_pred             CCCCCcHHHHHHHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc----CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccc-cccccccccccccCCchhhhhccchhH
Q 013459           81 LLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV-LKHENLGEYFDSKVPSLKGFHKTNGEL  155 (442)
Q Consensus        81 ~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~  155 (442)
                      +.+.+..+    +..+.||++..+.+.  ...++++.++++++++.|+..+. |++++        +|.+.....    +
T Consensus       232 l~g~~~~~~~~~~~~~~ri~~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~~~~--------~~~~~~~~~----~  297 (452)
T PRK06102        232 MRGLTAPDVVRRPLAGLRLVVPETVVF--DDAEPGVRAAFEAAVERLQAAGALVERQA--------FPAFQEILD----L  297 (452)
T ss_pred             HcCCCCccccccCCCCCEEEEecchhc--ccCCHHHHHHHHHHHHHHHhCCCEEEecC--------CccHHHHHH----H
Confidence            98754322    234457777655432  33578899999999999974332 12222        233221100    1


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHh-hCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCC
Q 013459          156 KNVMRLIQRYEFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP  234 (442)
Q Consensus       156 ~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a  234 (442)
                      ...+..+...|....+..++.. ....+.+.++.++..+..++..+|.++++.|..+++.+.++|+ +|+||+||++.+|
T Consensus       298 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~a  376 (452)
T PRK06102        298 IARHGWLVTAEAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVA  376 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCC
Confidence            1112223334555445555543 4456899999999888889999999999999999999999998 8999999999999


Q ss_pred             CCCCCCCcccHHH---HHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          235 PKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       235 ~~~~~~~~~~~~~---~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      |+++........+   ...++.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+++.+
T Consensus       377 p~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l  449 (452)
T PRK06102        377 PPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVI  449 (452)
T ss_pred             CCccccccCchhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            9886421111111   22344689999999999999999987 899999999999999999999999998765

>PRK07235 amidase; Provisional

Probab=100.00  E-value=2.4e-55  Score=421.18  Aligned_cols=285  Identities=23%  Similarity=0.299  Sum_probs=220.4

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|||||||||||+||+||||||||||+|+||+.|++|.++++|++||||||++|++.++++
T Consensus       167 ~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~v  246 (502)
T PRK07235        167 SAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEV  246 (502)
T ss_pred             CCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecCCCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccC------------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccc
Q 013459           81 LLQLPFAAQ------------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  140 (442)
Q Consensus        81 ~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~  140 (442)
                      +.+.+..++                  ..+.||++..+.+.. ...++++.++++++++.|+  |+.+ ++++++     
T Consensus       247 iag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~V-~~v~~p-----  319 (502)
T PRK07235        247 IAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFGL-PNSEPEVDEAVRAAAKRLEDLGATV-EEVSIP-----  319 (502)
T ss_pred             HcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccCC-CCCCHHHHHHHHHHHHHHHHCCCEE-EEeCCC-----
Confidence            987543221                  234678887654321 2246789999999999997  4443 233322     


Q ss_pred             cCCchhhhhccchhHHHHHHHHHHH----------------------HHHHhhHHHHHhhCCCCCHhHHHHHHhcc----
Q 013459          141 KVPSLKGFHKTNGELKNVMRLIQRY----------------------EFKNNHNEWIESVKPALDPDISAEIGEML----  194 (442)
Q Consensus       141 ~~p~~~~~~~~~~~~~~~~~~~~~~----------------------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  194 (442)
                         .....       ...+..+...                      +....+..+...+...+++.++.++..+.    
T Consensus       320 ---~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  389 (502)
T PRK07235        320 ---LHRLA-------LAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSETVKLVMLLGQYGLE  389 (502)
T ss_pred             ---chhhH-------HHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHhhhhhcchhhcCHHHHHHHHhcccccc
Confidence               11100       0000000000                      11111212223345578899998887665    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHH---HHhhhhccccccccceeeecCc
Q 013459          195 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN---RAFSLLSIASVSGCCQVTVPLG  271 (442)
Q Consensus       195 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~---~~~~~t~~~n~~g~p~~~~p~~  271 (442)
                      .++..+|.++++.|+.+++.|+++|+++|+||+||+|.+||+++........+..   .++.+|.++|++|+|+++||+|
T Consensus       390 ~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g  469 (502)
T PRK07235        390 RYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCG  469 (502)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECC
Confidence            3577899999999999999999999999999999999999998754322223322   2345789999999999999999


Q ss_pred             cCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459          272 YYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       272 ~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      ..+|+|+|+|+++++++|..+++++..+|+.
T Consensus       470 ~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~  500 (502)
T PRK07235        470 LVDGLPVGLMLVGRHFDEATILRAAAAFEAS  500 (502)
T ss_pred             cCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            8899999999999999999999999998763

>PRK05962 amidase; Validated

Probab=100.00  E-value=4.2e-55  Score=413.48  Aligned_cols=288  Identities=23%  Similarity=0.342  Sum_probs=229.3

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       126 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~v  205 (424)
T PRK05962        126 IPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAV  205 (424)
T ss_pred             CCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCceeeecCCCceeCCCcccCccccCccccccCCHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc----CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchh
Q 013459           81 LLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE  154 (442)
Q Consensus        81 ~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  154 (442)
                      +.+.+..+    ...+.||++..+.+.  ...++++.++++++++.|+  |+.+ +++++        |.+.....    
T Consensus       206 l~g~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~--------~~~~~~~~----  270 (424)
T PRK05962        206 MAGEKPIPLEVLPVAGLRIGLPKGYLL--ADMEPDVAAAFEASLAALEKAGARI-ADLAI--------DDLIARLA----  270 (424)
T ss_pred             HcCCCCCcccccCcCCcEEEEEccccc--ccCCHHHHHHHHHHHHHHHHCCCEE-EEecc--------chHHHHHH----
Confidence            98654322    234568888765432  2356889999999999987  4444 22222        22110000    


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCC
Q 013459          155 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP  234 (442)
Q Consensus       155 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a  234 (442)
                      .......+...|....+..++......+++.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.++
T Consensus       271 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a  350 (424)
T PRK05962        271 EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVA  350 (424)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCC
Confidence            00011123334555555566666667899999999998888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccHHH---HHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHHHH
Q 013459          235 PKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  304 (442)
Q Consensus       235 ~~~~~~~~~~~~~---~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~  304 (442)
                      |++.........+   ...++.||.++|++|+|+++||++. +|+|+|+|++++++.|..+++++..+++.++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~-~glPvGlqlvg~~~~D~~lL~~a~~le~~l~  422 (424)
T PRK05962        351 PTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG-MALPAGLMLTARNGSDRRLLAAAASVEKLLE  422 (424)
T ss_pred             CCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            9886532222212   1223458999999999999999974 6999999999999999999999999988653

>PRK06169 putative amidase; Provisional

Probab=100.00  E-value=4.2e-54  Score=412.09  Aligned_cols=282  Identities=19%  Similarity=0.252  Sum_probs=222.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+|||||||||||||+|+||+.|+.|.+ ++|++||||||++|++.++++
T Consensus       152 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~  230 (466)
T PRK06169        152 TAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDV  230 (466)
T ss_pred             CCCcCcHHHHHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999998886 999999999999999999999


Q ss_pred             hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459           81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  141 (442)
Q Consensus        81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~  141 (442)
                      +.+.+..+                 ..++.||++..++..  ...++++.++++++++.|+  |+.+ ++++.       
T Consensus       231 l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~-------  300 (466)
T PRK06169        231 IARPDARDWSALPPPTTSFLDALDRDVRGLRIAYSPTLGY--VDVDPEVAALVAQAVQRLAALGARV-EEVDP-------  300 (466)
T ss_pred             hcCCCCCCCcccCCCCcchhhhhccCCCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHcCCEE-EEeCC-------
Confidence            98643221                 124567887655431  2356889999999999997  4443 22111       


Q ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccC
Q 013459          142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD  221 (442)
Q Consensus       142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~  221 (442)
                       + +..       ....+..+...+....+..+.......+++.++.++..+..++..+|.++++.|+.+++.|.++|++
T Consensus       301 -~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~  371 (466)
T PRK06169        301 -G-FSD-------PVEAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHER  371 (466)
T ss_pred             -C-cch-------HHHHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             1 111       1112222223333333344444455678999999999999999999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCCCCCCCc--ccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHH
Q 013459          222 DGILVTPTTAYPPPKLGGKEM--LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQN  298 (442)
Q Consensus       222 ~d~li~Pt~~~~a~~~~~~~~--~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~  298 (442)
                      +|+||+||+|.+||+++....  ........+..||.++|++|+|+++||++.. +|+|+|+|++++++.|..+++++..
T Consensus       372 ~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~  451 (466)
T PRK06169        372 YDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARA  451 (466)
T ss_pred             CCEEEeCCCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHH
Confidence            999999999999998864211  1111112334689999999999999999986 8999999999999999999999999


Q ss_pred             HHHH
Q 013459          299 MYAS  302 (442)
Q Consensus       299 ~~~~  302 (442)
                      +++.
T Consensus       452 le~~  455 (466)
T PRK06169        452 YEQA  455 (466)
T ss_pred             HHhh
Confidence            8875

>PRK07488 indole acetimide hydrolase; Validated

Probab=100.00  E-value=1.1e-53  Score=409.83  Aligned_cols=284  Identities=26%  Similarity=0.364  Sum_probs=219.0

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       153 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~v  232 (472)
T PRK07488        153 IAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAV  232 (472)
T ss_pred             CCCCCchHHHHHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchhH
Q 013459           81 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL  155 (442)
Q Consensus        81 ~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  155 (442)
                      +.+.++.+   +..+.||++..+...  ...++++.++++++++.|+  |+.++ +++        +|.+.++.      
T Consensus       233 l~g~d~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~--------~~~~~~~~------  295 (472)
T PRK07488        233 ITGDAALPAPVALAGLRLGVPAAPFW--DGLDPDVAAVAEAALAKLAAAGVTFV-ELD--------LPGLHELN------  295 (472)
T ss_pred             hcCCCCCCCCcCcCCCEEEEEcchhc--cCCCHHHHHHHHHHHHHHHHCCCEEE-eeC--------CcCHHHHh------
Confidence            98765432   235678888754331  2356789999999999997  44442 222        22221110      


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhCCC----------CCHhHHHHHHh---cccCCHHHHHHHHHH-HHHHHHHHHhhcc-
Q 013459          156 KNVMRLIQRYEFKNNHNEWIESVKPA----------LDPDISAEIGE---MLEISETVIENCKSI-RNEMRSAISSLLK-  220 (442)
Q Consensus       156 ~~~~~~~~~~e~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~a~~~-r~~~~~~~~~~~~-  220 (442)
                      ...+..+...|....+..++......          ..+.+...+..   +..++..+|.++++. |+.+++.|.++|+ 
T Consensus       296 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~  375 (472)
T PRK07488        296 EAVGFPIALYEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFAR  375 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            00112233345555555554433221          25666655532   335788899999887 9999999999998 


Q ss_pred             -CCCEEEeeCCCCCCCCCCCCCc------ccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHH
Q 013459          221 -DDGILVTPTTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFL  292 (442)
Q Consensus       221 -~~d~li~Pt~~~~a~~~~~~~~------~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~l  292 (442)
                       ++|+||+||++.++|+++....      ....+ ..++.+|.++|++|+|+++||+|.. +|+|+|+|++++++.|..+
T Consensus       376 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~L  454 (472)
T PRK07488        376 HGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRL  454 (472)
T ss_pred             CCCCEEEeCCCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHH
Confidence             6899999999999998865311      11222 2344578999999999999999987 7999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013459          293 LDTVQNMYAS  302 (442)
Q Consensus       293 l~~~~~~~~~  302 (442)
                      ++++..+|+.
T Consensus       455 L~~A~~lE~~  464 (472)
T PRK07488        455 LAIGRALERV  464 (472)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>PRK07487 amidase; Provisional

Probab=100.00  E-value=1.4e-53  Score=408.23  Aligned_cols=286  Identities=20%  Similarity=0.211  Sum_probs=220.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCccc----CC-CCCcccccccCCHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----IS-TSLDTVGWFARDPKILR   75 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p----~~-~~~d~~Gp~ar~~~d~~   75 (442)
                      +|||||||||||||+|++++|+|||||||||+|||||||||||||+||||..|+++    ++ .++|++||||||++|++
T Consensus       152 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a  231 (469)
T PRK07487        152 TPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLR  231 (469)
T ss_pred             CCCcchHHHHHHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHH
Confidence            58999999999999999999999999999999999999999999999999999873    33 47899999999999999


Q ss_pred             HHHHHhhCCCccc----------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCC
Q 013459           76 HVGHVLLQLPFAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP  143 (442)
Q Consensus        76 ~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p  143 (442)
                      .+++++.+.+..+          ...+.||++..+...  ...++++.++++++++.|+  |+.+ +++       ..+|
T Consensus       232 ~~~~~l~g~d~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~-------~~~~  301 (469)
T PRK07487        232 LALAAMAAPDPRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTV-EEV-------DDTP  301 (469)
T ss_pred             HHHHHHhCCCCCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEE-Eec-------CCCC
Confidence            9999998654322          124568888765432  2356889999999999997  4443 221       0123


Q ss_pred             chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhh-CCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCC
Q 013459          144 SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDD  222 (442)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~  222 (442)
                      .+..       ....+..+...+....+..++... .+.+.+.+...+..+..++..+|.++++.|+.+++.|.++|+++
T Consensus       302 ~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~  374 (469)
T PRK07487        302 PLRE-------AAELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDY  374 (469)
T ss_pred             chHH-------HHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2221       222333344455555555554432 34466666666677778899999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCCCCCCCcccHHHHH--HHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHH
Q 013459          223 GILVTPTTAYPPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMY  300 (442)
Q Consensus       223 d~li~Pt~~~~a~~~~~~~~~~~~~~~--~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~  300 (442)
                      |+||+||+|.+||+++........+..  ....+|.++|++|+|+++||++..+|+|+|+|++++++.|..+++++..+|
T Consensus       375 D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE  454 (469)
T PRK07487        375 PLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIE  454 (469)
T ss_pred             CEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHH
Confidence            999999999999988642222222211  111246788999999999999988899999999999999999999999988


Q ss_pred             HHH
Q 013459          301 ASL  303 (442)
Q Consensus       301 ~~~  303 (442)
                      +.+
T Consensus       455 ~~~  457 (469)
T PRK07487        455 ARG  457 (469)
T ss_pred             Hhh
Confidence            754

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=100.00  E-value=1.4e-53  Score=410.60  Aligned_cols=286  Identities=25%  Similarity=0.288  Sum_probs=224.0

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||+|||+|+++||+|||||||||+||+||||||||||+|+||..|++|.++++|++||||||++|++.++++
T Consensus       110 ~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~~~l~v  189 (561)
T TIGR02713       110 ISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRI  189 (561)
T ss_pred             CCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccC-------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCch
Q 013459           81 LLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSL  145 (442)
Q Consensus        81 ~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~  145 (442)
                      +.+.+..++             ..+.||+++.+.... ...++++.++++++++.|+  |+++ +++++        |.+
T Consensus       190 ~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v-~~v~~--------~~~  259 (561)
T TIGR02713       190 AAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLE-FFGDSQAEAAFAAAVERLEALGVEV-VEIDF--------APF  259 (561)
T ss_pred             hcCCCCcCccccCCCchhhcccCCCCEEEEECchhcC-CCCCHHHHHHHHHHHHHHHHCCCEE-EEecc--------hhH
Confidence            986543221             134678876521100 1134678999999999997  4443 22222        221


Q ss_pred             hhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEE
Q 013459          146 KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL  225 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~l  225 (442)
                      .+.      ....+...+..+....+..++..+...+.|.+...+..+..++..+|.+++..|+.+++.++++|+++|+|
T Consensus       260 ~~~------~~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvL  333 (561)
T TIGR02713       260 LET------AALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVL  333 (561)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence            111      00111112223444455566666777899999999998888999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          226 VTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       226 i~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      |+||++.+++..+ ..............||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+++..
T Consensus       334 l~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~  411 (561)
T TIGR02713       334 LVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAAS  411 (561)
T ss_pred             EeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhcc
Confidence            9999999865332 2112222223334589999999999999999987 899999999999999999999999998753

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>PRK07486 amidase; Provisional

Probab=100.00  E-value=1.9e-53  Score=409.51  Aligned_cols=286  Identities=21%  Similarity=0.220  Sum_probs=218.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcc-cCCCCCcccccccCCHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGH   79 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~-p~~~~~d~~Gp~ar~~~d~~~~~~   79 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++ |+++++|++||||||++|++.+++
T Consensus       157 ~pGGSSgGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~  236 (484)
T PRK07486        157 SAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLA  236 (484)
T ss_pred             CCCcCcHHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999998855 789999999999999999999999


Q ss_pred             HhhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccc
Q 013459           80 VLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  140 (442)
Q Consensus        80 ~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~  140 (442)
                      ++.+.+..+                 ...+.||++..++... ...++++.++++++++.|+  |+.+ +++..      
T Consensus       237 ~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~------  308 (484)
T PRK07486        237 VQAGYDPRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWGGY-LPMEAGVLELCEAALATLRELGCDV-EAALP------  308 (484)
T ss_pred             HHhCCCCCCCccccCCCcchhhHhccCCCCCEEEEeCcccCC-CCCCHHHHHHHHHHHHHHHHCCCEE-EEeCC------
Confidence            998653221                 1245688887554321 1256789999999999997  4443 11111      


Q ss_pred             cCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHH--hhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhh
Q 013459          141 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL  218 (442)
Q Consensus       141 ~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~  218 (442)
                        + +. .    ....+.+..+........+.....  .....+++.+..++..+..++..+|.++++.|+.+++.|.++
T Consensus       309 --~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~  380 (484)
T PRK07486        309 --A-FP-P----ERLWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRL  380 (484)
T ss_pred             --C-cc-h----HHHHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              1 10 0    001122222222222222222222  234568899999998888899999999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCCCCCCC-----cccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHH
Q 013459          219 LKDDGILVTPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFL  292 (442)
Q Consensus       219 ~~~~d~li~Pt~~~~a~~~~~~~-----~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~l  292 (442)
                      |+++|+||+||++.++|.++...     .........++.+|.++|++|+|+++||++.. +|+|+|+|+++++++|..+
T Consensus       381 ~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~l  460 (484)
T PRK07486        381 FERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAV  460 (484)
T ss_pred             HhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHH
Confidence            99999999999999998775311     11111222344578899999999999999986 8999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013459          293 LDTVQNMYAS  302 (442)
Q Consensus       293 l~~~~~~~~~  302 (442)
                      ++++..+++.
T Consensus       461 L~~a~~le~~  470 (484)
T PRK07486        461 LQLAHAYEQA  470 (484)
T ss_pred             HHHHHHHHhc
Confidence            9999998875

>PRK08186 allophanate hydrolase; Provisional

Probab=100.00  E-value=1.8e-53  Score=414.22  Aligned_cols=285  Identities=26%  Similarity=0.329  Sum_probs=224.6

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|+++||||||||||||+||+||||||||||+|+||..|++|.++++|++||||||++|++.++++
T Consensus       147 ~~GGSSsGSAaAVAaG~~~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~v  226 (600)
T PRK08186        147 VSGGSSSGSAVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAV  226 (600)
T ss_pred             CCCCCcHHHHHHHHcCCcceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-------------CCCCceEEEcccc-hhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCc
Q 013459           81 LLQLPFAA-------------QRSPRQIIIADDC-FELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPS  144 (442)
Q Consensus        81 ~~~~~~~~-------------~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~  144 (442)
                      +.+.+..+             ...+.||+++.+. ...  ..++++.++++++++.|+  |+.+ +++++        |.
T Consensus       227 l~g~d~~D~~s~~~p~~~~~~~~~~lrIgv~~~~~~~~--~~~~~v~~a~~~a~~~L~~~G~~v-~ei~~--------~~  295 (600)
T PRK08186        227 MAGFDPADPYSRANPADAPAALPAGPRVGVPRAAQLEF--FGDAEAEAAFAAALARLEALGAEL-VEIDF--------SP  295 (600)
T ss_pred             hcCCCCCCcccccCCcccccccCCCCEEEEEcchhccc--cCCHHHHHHHHHHHHHHHHcCCeE-EEecc--------hh
Confidence            98654322             1234677776421 111  135679999999999997  4443 22222        22


Q ss_pred             hhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCE
Q 013459          145 LKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI  224 (442)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~  224 (442)
                      +.+.      ....+......|....+.+++..+...+.|.+...+..+..++..+|.+++..|+.+++.++++|+++|+
T Consensus       296 ~~~~------~~~~~~~~~~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~  369 (600)
T PRK08186        296 FLEA------ARLLYEGPWVAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDA  369 (600)
T ss_pred             HHHH------HHHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            2110      1111222223344455666776666778999999999888999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          225 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       225 li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      ||+||+|.+++ +................||.++|++|+|+++||++.. +|+|+|+|++++++.|..+++++..+++..
T Consensus       370 Ll~Pt~p~~~~-~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~  448 (600)
T PRK08186        370 LLVPTAPTHPT-IAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL  448 (600)
T ss_pred             EEeCCCCCCCC-chhhcCCchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence            99999999875 3322222222222334589999999999999999976 899999999999999999999999998754

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=100.00  E-value=1.7e-53  Score=408.22  Aligned_cols=280  Identities=27%  Similarity=0.370  Sum_probs=213.3

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       135 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~  214 (460)
T TIGR00132       135 VPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDV  214 (460)
T ss_pred             CCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCcCCCCCCcCcccCCCcccCeeCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459           81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  141 (442)
Q Consensus        81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~  141 (442)
                      |.+.+..+                 ...+.||++..+...   ..++++.++++++++.|+  |+.+ .+++        
T Consensus       215 l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~v~~a~~~a~~~L~~~G~~v-~~~~--------  282 (460)
T TIGR00132       215 ISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKEVQEKFENALEVLEELGAEI-VEVS--------  282 (460)
T ss_pred             HcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------
Confidence            98653221                 123567887765432   246789999999999997  4444 2222        


Q ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHh------------------hHHHHHh-hCCCCCHhHHHHHHhcccCC-----
Q 013459          142 VPSLKGFHKTNGELKNVMRLIQRYEFKNN------------------HNEWIES-VKPALDPDISAEIGEMLEIS-----  197 (442)
Q Consensus       142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----  197 (442)
                      +|.+...       ...+..+...|....                  +.+++.. ....+++.+..++..+...+     
T Consensus       283 ~p~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (460)
T TIGR00132       283 FPHVKYA-------LPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYY  355 (460)
T ss_pred             CCcHHHH-------HHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhcchhhcCHHHHHHHHccccccccchh
Confidence            2222111       111111222222111                  2223332 23447788877776554433     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCccc-HHHHHHHhhhhccccccccceeeecCccC-CC
Q 013459          198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DK  275 (442)
Q Consensus       198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~-~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~  275 (442)
                      ..+|.++++.|..+++.+.++|+++|+||+||++.+||+++...... ..+.  ...||.++|++|+|+++||++.. +|
T Consensus       356 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~--~~~~t~~~nl~g~PaisvP~g~~~~G  433 (460)
T TIGR00132       356 DKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYL--SDILTVPANLAGLPAISVPCGVKEKG  433 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhc--ccceeccccccCCCcEEEecCcCCCC
Confidence            34488999999999999999999999999999999999987532211 1121  12378999999999999999988 89


Q ss_pred             CceeEEEecccCCcHHHHHHHHHHHH
Q 013459          276 CPTSVSFIARHGGDRFLLDTVQNMYA  301 (442)
Q Consensus       276 lp~g~~~~~~~~~d~~ll~~~~~~~~  301 (442)
                      +|+|+|++++++.|..+++++..+++
T Consensus       434 lPvGlqlig~~~~D~~lL~~A~~le~  459 (460)
T TIGR00132       434 LPIGLQIIGKCFDDKTLLQVSYAFEQ  459 (460)
T ss_pred             CCeeEEEECCCCchHHHHHHHHHHhh
Confidence            99999999999999999999998875

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=100.00  E-value=1.6e-53  Score=408.23  Aligned_cols=281  Identities=25%  Similarity=0.347  Sum_probs=211.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.++++|++||||||++|++.++++
T Consensus       135 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~  214 (459)
T PRK00012        135 VPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNA  214 (459)
T ss_pred             CCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeecCCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459           81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  141 (442)
Q Consensus        81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~  141 (442)
                      +.+.+..+                 ...+.||++..+.+.  ...++++.++++++++.|+  |+.++ ++++       
T Consensus       215 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~-------  284 (459)
T PRK00012        215 IAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYFG--EGLDPEVKEAVEAAIKKLEDLGAEIV-EVSL-------  284 (459)
T ss_pred             HhCCCCCCcccccCCCCchhhhhcccccccEEEEEccccc--ccCCHHHHHHHHHHHHHHHHCCCEEE-EeCC-------
Confidence            98643221                 124457887765431  2346789999999999987  44442 2222       


Q ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHh------------------hHHHHHh-hCCCCCHhHHHHHHhcccCC-----
Q 013459          142 VPSLKGFHKTNGELKNVMRLIQRYEFKNN------------------HNEWIES-VKPALDPDISAEIGEMLEIS-----  197 (442)
Q Consensus       142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----  197 (442)
                       |.+...       ...+..+...++...                  +.+++.. ....+++.+..++..+...+     
T Consensus       285 -~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  356 (459)
T PRK00012        285 -PHTKYA-------LPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYY  356 (459)
T ss_pred             -CchHHH-------HHHHHHHHHHHHHHHHhhcccccccccccccccHHHHHhhhhhhccCHHHHHHHHhCcchhccccc
Confidence             222111       111111222222211                  2222222 22347788888877554332     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCC
Q 013459          198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKC  276 (442)
Q Consensus       198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~l  276 (442)
                      ...|.++.+.|..+++.|.++|+++|+||+||++.+||+++........ ....+.||.++|++|+|+++||++.. +|+
T Consensus       357 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~-~~~~~~~t~~~n~~G~PaisvP~g~~~~gl  435 (459)
T PRK00012        357 DAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLA-MYLSDIFTVPANLAGLPAISVPAGFDDGGL  435 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHh-hhccccccccccccCCCcEEEecCCCCCCC
Confidence            3458889999999999999999999999999999999988653211111 11122379999999999999999987 699


Q ss_pred             ceeEEEecccCCcHHHHHHHHHHH
Q 013459          277 PTSVSFIARHGGDRFLLDTVQNMY  300 (442)
Q Consensus       277 p~g~~~~~~~~~d~~ll~~~~~~~  300 (442)
                      |+|+|+++++++|..+++++..++
T Consensus       436 PvGlqlvg~~~~D~~LL~~a~~~E  459 (459)
T PRK00012        436 PVGLQLIGKYFDEETLLNVAYAFE  459 (459)
T ss_pred             CEEEEEECCCCchHHHHHHHHHhC
Confidence            999999999999999999998753

>PRK06061 amidase; Provisional

Probab=100.00  E-value=4.5e-53  Score=405.73  Aligned_cols=282  Identities=22%  Similarity=0.303  Sum_probs=217.4

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|+.|.++++|++||||||++|++.++++
T Consensus       160 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~  239 (483)
T PRK06061        160 TPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDA  239 (483)
T ss_pred             CCCCChHHHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---------------CCCCceEEEcccchh--hcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459           81 LLQLPFAA---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  141 (442)
Q Consensus        81 ~~~~~~~~---------------~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~  141 (442)
                      +.+.+..+               ...+.||++..+...  .....++++.++++++++.|+  |+.++ ++..       
T Consensus       240 l~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~-~~~~-------  311 (483)
T PRK06061        240 ASGNHPGDRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVV-PADP-------  311 (483)
T ss_pred             HhCCCCCCCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEE-EeCC-------
Confidence            98653211               123467777643221  112356889999999999997  44432 1111       


Q ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHh--hCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhc
Q 013459          142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL  219 (442)
Q Consensus       142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~  219 (442)
                       +.....       .  .....  .....+..+...  ....+.+.++.++..+..++..+|.++++.|+.+++.+.++|
T Consensus       312 -~~~~~~-------~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~  379 (483)
T PRK06061        312 -DYGLRL-------G--LNFLP--RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIF  379 (483)
T ss_pred             -chhhHH-------H--HHHHH--HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             110000       0  00000  000111122222  334578899999988888999999999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCCCCCCCcc--c--HHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHH
Q 013459          220 KDDGILVTPTTAYPPPKLGGKEML--S--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLD  294 (442)
Q Consensus       220 ~~~d~li~Pt~~~~a~~~~~~~~~--~--~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~  294 (442)
                      +++|+||+||++.+||+++.....  .  ......+..||.++|++|+|+++||++.. +|+|+|+|++++++.|..+++
T Consensus       380 ~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~  459 (483)
T PRK06061        380 DIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLIS  459 (483)
T ss_pred             hcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHH
Confidence            999999999999999988742211  0  11112334589999999999999999987 899999999999999999999


Q ss_pred             HHHHHHHH
Q 013459          295 TVQNMYAS  302 (442)
Q Consensus       295 ~~~~~~~~  302 (442)
                      ++..+++.
T Consensus       460 ~A~~le~~  467 (483)
T PRK06061        460 LAAQLEAV  467 (483)
T ss_pred             HHHHHHhh
Confidence            99999875

>PRK06170 amidase; Provisional

Probab=100.00  E-value=7.4e-53  Score=406.48  Aligned_cols=286  Identities=21%  Similarity=0.249  Sum_probs=216.1

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCccc-----C--CCCCcccccccCCHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKI   73 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p-----~--~~~~d~~Gp~ar~~~d   73 (442)
                      +|||||||||||||+|++++|+|||||||||+|||||||||||||+||||+.|++|     +  +.++|++||||||++|
T Consensus       155 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D  234 (490)
T PRK06170        155 TPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARD  234 (490)
T ss_pred             CCCCChHHHHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHH
Confidence            68999999999999999999999999999999999999999999999999999988     4  3468999999999999


Q ss_pred             HHHHHHHhhCCCccc---------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccc
Q 013459           74 LRHVGHVLLQLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE  136 (442)
Q Consensus        74 ~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~  136 (442)
                      ++.+++++.+.+..+               ...+.||++..+...  ...++++.++++++++.|+  |+.++ +++.  
T Consensus       235 ~a~~l~~l~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~--  309 (490)
T PRK06170        235 LALLLDVMAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHPL--LPTDAAVRAAIERLAAALADAGARVV-RHSP--  309 (490)
T ss_pred             HHHHHHHHhCCCccccccccccCCCcccccccCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHCCCEEE-EcCC--
Confidence            999999998754322               113467888765432  2356889999999999997  44442 2110  


Q ss_pred             cccccCCchhhhhccchhHHHHHHHHHHHHHHHhhH-HHHHh------hCCCCCHhHHHHHHhcccCCHHHHHHHHHHHH
Q 013459          137 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHN-EWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRN  209 (442)
Q Consensus       137 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~  209 (442)
                          .+|.+..       ....+..+...+....+. .....      ....+.+.+..++..+..++..+|.++++.|+
T Consensus       310 ----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~  378 (490)
T PRK06170        310 ----LLPDLAE-------SARLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAARE  378 (490)
T ss_pred             ----CCCchHH-------HHHHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHH
Confidence                1122211       112222222222222111 11111      12235666777777788889999999999999


Q ss_pred             HHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCc--------c-cHHHHHHHhhhhccccccccceeeecCccC-CCCcee
Q 013459          210 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM--------L-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTS  279 (442)
Q Consensus       210 ~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~--------~-~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g  279 (442)
                      .+++.|.++|+++|+||+||++.+||+++....        . ........+.||.++|++|+|+++||+|.. +|+|+|
T Consensus       379 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvG  458 (490)
T PRK06170        379 ELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPATAIPIGLSATGLPVG  458 (490)
T ss_pred             HHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCCeEEEECCcCCCCCcee
Confidence            999999999999999999999999998864210        0 000111224689999999999999999987 899999


Q ss_pred             EEEecccCCcHHHHHHHHHHHHH
Q 013459          280 VSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       280 ~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      +|+++++++|..+++++..+++.
T Consensus       459 lQlig~~~~D~~LL~~a~~lE~~  481 (490)
T PRK06170        459 VQIVGPALEDRTPLRLAELLEEE  481 (490)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999875

>PRK12470 amidase; Provisional

Probab=100.00  E-value=7.8e-53  Score=401.87  Aligned_cols=284  Identities=21%  Similarity=0.249  Sum_probs=214.8

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||+|||+|++++|+|||||||||+|||||||||||||+||||..|++|+++++|++||||||++|++.++++
T Consensus       151 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~v  230 (462)
T PRK12470        151 TPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDA  230 (462)
T ss_pred             CCCcchhHHHHHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---------CCCCceEEEcccchh-hcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhh
Q 013459           81 LLQLPFAA---------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF  148 (442)
Q Consensus        81 ~~~~~~~~---------~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~  148 (442)
                      +.+.+..+         ...+.||++..++.. .....++++.++++++++.|+  |+.++ ++.         |.+...
T Consensus       231 l~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~---------~~~~~~  300 (462)
T PRK12470        231 TTTVPGPEGEFVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVV-VRD---------PDYPAA  300 (462)
T ss_pred             hcCCCCCCcchhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEE-EeC---------CCchhH
Confidence            98543211         124568888755321 112356789999999999997  44431 111         111000


Q ss_pred             hccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEee
Q 013459          149 HKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~P  228 (442)
                            ....+.... ....... .....+...+.+.++.++..+..++..+|.....++..+++.|.++|+++|+||+|
T Consensus       301 ------~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~P  372 (462)
T PRK12470        301 ------TYANYLPRF-FRGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTP  372 (462)
T ss_pred             ------HHHHHHHHH-HHHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCC
Confidence                  000010000 0000000 11122345688889999998988888888755555669999999999999999999


Q ss_pred             CCCCCCCCCCCCCc-c-cHH--HHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459          229 TTAYPPPKLGGKEM-L-SED--YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       229 t~~~~a~~~~~~~~-~-~~~--~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      |+|.+||+++.... . ...  ....+..||.++|++|+|+++||+|.. +|+|+|+|+++++++|..+++++..+++.
T Consensus       373 t~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~  451 (462)
T PRK12470        373 GTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA  451 (462)
T ss_pred             CCCCCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence            99999998864321 1 111  112344589999999999999999987 89999999999999999999999998764

>PRK07139 amidase; Provisional

Probab=100.00  E-value=9.5e-53  Score=398.23  Aligned_cols=282  Identities=25%  Similarity=0.373  Sum_probs=211.7

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||++ +++|+|||||||||+|||||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       116 ~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~v  194 (439)
T PRK07139        116 LVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKV  194 (439)
T ss_pred             CCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCCCCcCCCCcccCcccCCccccccCCHHHHHHHHHH
Confidence            5999999999999997 799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccC------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchh
Q 013459           81 LLQLPFAAQ------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK  146 (442)
Q Consensus        81 ~~~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~  146 (442)
                      +.+.+..++            ..+.||++...+    ...++++.++++++++.|+  |+.+ ++++++..      .+.
T Consensus       195 l~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~~----~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~~~~------~~~  263 (439)
T PRK07139        195 LFGKDENDLTSVDVKINNVKKTKPKKVAYLDCF----KELEEYVAKKYKKLINILKSENIEV-EKIKIDEK------LLK  263 (439)
T ss_pred             HcCCCcCCccccccCcccccccCCCEEEEECcc----ccCCHHHHHHHHHHHHHHHHCCCEE-EEeCCChh------HHH
Confidence            987543221            245678875322    2246789999999999987  4443 22222110      000


Q ss_pred             hhhccchhHHHHHHHHHHHHHHH-----------------hhHHHH-HhhCCCCCHhHHHHHHhcccCCH-----HHHHH
Q 013459          147 GFHKTNGELKNVMRLIQRYEFKN-----------------NHNEWI-ESVKPALDPDISAEIGEMLEISE-----TVIEN  203 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~e~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  203 (442)
                      .       ....+..+...+...                 .+..+. ......+++.+..++..+..++.     .+|.+
T Consensus       264 ~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  336 (439)
T PRK07139        264 A-------IKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEGFGKMVQKRLILGSYFLEEENQEKYFLK  336 (439)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchhccCHHHHHHHHcccccccccccHHHHHH
Confidence            0       000111111111111                 112222 22334588888888887765543     35889


Q ss_pred             HHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEe
Q 013459          204 CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFI  283 (442)
Q Consensus       204 a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~  283 (442)
                      +++.|+.+++.|.++|+++|+||+||++.+||+++........+ ..+  +|.++|++|+|+++||+|..+|+|+|+|++
T Consensus       337 a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~-~~~--~t~~~nl~G~PaisvP~g~~~glPiGlqiv  413 (439)
T PRK07139        337 AKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNY-MDY--ILTISNLVGNPSLSIPLGKYNNLPFNLAID  413 (439)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhh-hhh--cccCcccCCCCeEEEeCCCCCCCCeEEEEE
Confidence            99999999999999999999999999999999886531111112 111  367899999999999999558999999999


Q ss_pred             cccCCcHHHHHHHHHHHHHHH
Q 013459          284 ARHGGDRFLLDTVQNMYASLQ  304 (442)
Q Consensus       284 ~~~~~d~~ll~~~~~~~~~~~  304 (442)
                      +++++|..+++++..+|+.++
T Consensus       414 g~~~~D~~LL~~A~~lE~~~~  434 (439)
T PRK07139        414 SKIYDDEKLLSYSLYIEELIK  434 (439)
T ss_pred             CCCCChHHHHHHHHHHHHHhc
Confidence            999999999999999988654

>PRK07042 amidase; Provisional

Probab=100.00  E-value=1.1e-52  Score=402.08  Aligned_cols=282  Identities=18%  Similarity=0.134  Sum_probs=217.7

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+|||||||||||||+||||..|..    +.|++||||||++|++.++++
T Consensus       151 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~v  226 (464)
T PRK07042        151 NPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSV  226 (464)
T ss_pred             CCCCChHHHHHHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999998853    358999999999999999999


Q ss_pred             hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459           81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV  142 (442)
Q Consensus        81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~  142 (442)
                      +.+.+..+                ...+.||++..++.. ....++++.++++++++.|+  |+.++ +++        +
T Consensus       227 l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~--------~  296 (464)
T PRK07042        227 LSRPDARDGTSLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVE-PVP--------P  296 (464)
T ss_pred             hcCCCCCCccccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEE-EeC--------C
Confidence            98654222                123468888755421 12356889999999999997  44432 211        1


Q ss_pred             CchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCC
Q 013459          143 PSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDD  222 (442)
Q Consensus       143 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~  222 (442)
                      +....       ....+..+...+....+..+.......+.+.+..++..+..++..+|.++...|..+++.+.++|.++
T Consensus       297 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  369 (464)
T PRK07042        297 FLTRA-------MLDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEF  369 (464)
T ss_pred             chhHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            11111       11111112222333334444455566788999999988888999999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCCCCCCCc-ccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHH
Q 013459          223 GILVTPTTAYPPPKLGGKEM-LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  300 (442)
Q Consensus       223 d~li~Pt~~~~a~~~~~~~~-~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~  300 (442)
                      |+||+||++.+||+++.... .........+.||.++|++|+|+++||+|.. +|+|+|+|++++++.|..+++++..++
T Consensus       370 D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le  449 (464)
T PRK07042        370 DYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFE  449 (464)
T ss_pred             CEEEcCCCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHH
Confidence            99999999999998863211 1111111234589999999999999999987 799999999999999999999999998


Q ss_pred             HHH
Q 013459          301 ASL  303 (442)
Q Consensus       301 ~~~  303 (442)
                      +..
T Consensus       450 ~~~  452 (464)
T PRK07042        450 GWR  452 (464)
T ss_pred             Hhc
Confidence            754

>PRK08137 amidase; Provisional

Probab=100.00  E-value=2.7e-52  Score=402.78  Aligned_cols=276  Identities=25%  Similarity=0.282  Sum_probs=211.5

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.++++
T Consensus       158 ~~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~v  237 (497)
T PRK08137        158 SPCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTA  237 (497)
T ss_pred             CCCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc--------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459           81 LLQLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF  138 (442)
Q Consensus        81 ~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~  138 (442)
                      +.+.+..+                    ...+.||++..++.    ..++++.++++++++.|+  |+.+ +++++    
T Consensus       238 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~----  308 (497)
T PRK08137        238 IAGGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVV-IDVVD----  308 (497)
T ss_pred             HhCCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEE-EeccC----
Confidence            98643211                    12456788876543    256789999999999997  4444 22222    


Q ss_pred             cccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHh-----------------------hCCCCCHhHHHHHHhccc
Q 013459          139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES-----------------------VKPALDPDISAEIGEMLE  195 (442)
Q Consensus       139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~  195 (442)
                          |.+..       +...+..+...|....+..++..                       ....+++.+..++..+..
T Consensus       309 ----~~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (497)
T PRK08137        309 ----LDDGD-------WGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPG  377 (497)
T ss_pred             ----Cchhh-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCC
Confidence                21111       11112222223332222222211                       124567888888888888


Q ss_pred             CCHHHHHHHHHHHHHH--HHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCc
Q 013459          196 ISETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG  271 (442)
Q Consensus       196 ~~~~~~~~a~~~r~~~--~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~  271 (442)
                      ++..+|.++++.++.+  ++.|.++|+  ++|+||+||++ ++|+++....  ..+   ...+|.++|++|+|+++||+|
T Consensus       378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~---~~~~t~~~nl~G~PaisvP~g  451 (497)
T PRK08137        378 LDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSF---GGSSSTPAAVAGYPHLTVPMG  451 (497)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--ccc---ccccccccHhhCCCeEEEeCC
Confidence            8999999988755554  478999997  68999999998 8888754211  111   113678999999999999999


Q ss_pred             cCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459          272 YYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       272 ~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      ..+|+|+|+|+++++++|..+++++..+|+.
T Consensus       452 ~~~GlPvGvQlig~~~~d~~LL~~a~~lE~~  482 (497)
T PRK08137        452 QVQGLPVGLSFIGAAWSEARLLELGYAYEQA  482 (497)
T ss_pred             CCCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999875

>PRK06529 amidase; Provisional

Probab=100.00  E-value=7.5e-52  Score=398.22  Aligned_cols=286  Identities=19%  Similarity=0.230  Sum_probs=214.5

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCccc-ccccCCHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGH   79 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~-Gp~ar~~~d~~~~~~   79 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+||||..++.+.+++.|++ ||||||++|++.+++
T Consensus       143 ~~GGSSgGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~  222 (482)
T PRK06529        143 NAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLY  222 (482)
T ss_pred             CCCcCcHHHHHHHHcCCCceeeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999987776666777776 799999999999999


Q ss_pred             HhhCCCcccC---------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459           80 VLLQLPFAAQ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV  142 (442)
Q Consensus        80 ~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~  142 (442)
                      ++.+.+..++               ..+.||++..+... ....++++.++++++++.|+  |+.++ +++.       .
T Consensus       223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~-ev~~-------~  293 (482)
T PRK06529        223 YLQMYQMESPFPLATLSKESLFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVV-ELEE-------F  293 (482)
T ss_pred             HhhCCCCCCCcccCCcccchhccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEE-EcCC-------C
Confidence            9976432110               23467887754321 12356889999999999997  44442 2110       1


Q ss_pred             C-chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhh-----CCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q 013459          143 P-SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAIS  216 (442)
Q Consensus       143 p-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~  216 (442)
                      | .+..       ....+..+...+....+..+....     ...+.+..+..+..+..++..+|.++.+.|+.+++.|.
T Consensus       294 p~~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~  366 (482)
T PRK06529        294 PLDMTE-------VMRSYYIMNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMA  366 (482)
T ss_pred             CCCHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            2 1111       112223333334433333332111     12356666666777778899999999999999999999


Q ss_pred             hhccCCCEEEeeCCCCCCCCCCCCCccc----------------------HHH--HHHHhhhhccccccccceeeecCcc
Q 013459          217 SLLKDDGILVTPTTAYPPPKLGGKEMLS----------------------EDY--QNRAFSLLSIASVSGCCQVTVPLGY  272 (442)
Q Consensus       217 ~~~~~~d~li~Pt~~~~a~~~~~~~~~~----------------------~~~--~~~~~~~t~~~n~~g~p~~~~p~~~  272 (442)
                      ++|+++|+||+||++.+||+++......                      ..+  ...++.||.++|++|+|+++||+|.
T Consensus       367 ~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~  446 (482)
T PRK06529        367 SFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYE  446 (482)
T ss_pred             HHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCc
Confidence            9999999999999999999886421110                      011  1123458999999999999999998


Q ss_pred             C-CCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459          273 Y-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       273 ~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      . +|+|+|+|+++++++|..+++++..+++.
T Consensus       447 ~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~  477 (482)
T PRK06529        447 TKEGLPMGVQLIAAKGREDLLLGIAEQFEAA  477 (482)
T ss_pred             CCCCCceeEEEecCCCcHHHHHHHHHHHHhc
Confidence            7 89999999999999999999999988763

>PRK07869 amidase; Provisional

Probab=100.00  E-value=1.7e-50  Score=387.93  Aligned_cols=284  Identities=19%  Similarity=0.249  Sum_probs=201.3

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccC-CCCCcccccccCCHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGH   79 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~-~~~~d~~Gp~ar~~~d~~~~~~   79 (442)
                      +|||||||||||||+|++++|+|||||||||+|||||||||||||+||||..|+.|. ..++|++||||||++|++.+++
T Consensus       153 ~pGGSSgGsAaAVAaG~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~  232 (468)
T PRK07869        153 SAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYR  232 (468)
T ss_pred             CCCCCchHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999998874 4478999999999999999999


Q ss_pred             HhhCCCccc-----------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchh
Q 013459           80 VLLQLPFAA-----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK  146 (442)
Q Consensus        80 ~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~  146 (442)
                      ++.+.+...           ...+.||++..+.+. ....++++.++++++++.|+  |+.+ +++++        |...
T Consensus       233 v~~g~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v-~~~~~--------~~~~  302 (468)
T PRK07869        233 EAERYYRNPKLPPIGDVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRV-EPVDL--------PVPA  302 (468)
T ss_pred             HHhccCccCCCCchhhhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEE-EEeCC--------CchH
Confidence            997643110           124568887755431 02356889999999999997  4443 22222        2111


Q ss_pred             hhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhH-----HHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccC
Q 013459          147 GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDI-----SAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD  221 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~  221 (442)
                      ++..    ....+..+............   ....+.+..     ......+.. +..+|.++.+.|+.+++.+.++|++
T Consensus       303 ~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~  374 (468)
T PRK07869        303 SFVD----DFLLYWGFLAFALVRGGRRT---FGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGT  374 (468)
T ss_pred             HHHH----HHHHHHHHHHHHHHhhhhhh---cccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1100    00001101111110000000   111122222     222122222 4456788888999999999999999


Q ss_pred             CCEEEeeCCCCCCCCCCCCCcc-c-H---HHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHH
Q 013459          222 DGILVTPTTAYPPPKLGGKEML-S-E---DYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDT  295 (442)
Q Consensus       222 ~d~li~Pt~~~~a~~~~~~~~~-~-~---~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~  295 (442)
                      +|+||+||+|.+||+++..... . .   .....+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..++++
T Consensus       375 ~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~  454 (468)
T PRK07869        375 YDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLEL  454 (468)
T ss_pred             CCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHH
Confidence            9999999999999988742211 0 1   1111334579999999999999999986 8999999999999999999999


Q ss_pred             HHHHHHH
Q 013459          296 VQNMYAS  302 (442)
Q Consensus       296 ~~~~~~~  302 (442)
                      +..+++.
T Consensus       455 A~~le~~  461 (468)
T PRK07869        455 AYELEEA  461 (468)
T ss_pred             HHHHHhc
Confidence            9998764

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=100.00  E-value=4e-51  Score=396.28  Aligned_cols=277  Identities=29%  Similarity=0.409  Sum_probs=201.2

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|||||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       127 ~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~GlkPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~v  206 (441)
T PF01425_consen  127 TPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGLKPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDV  206 (441)
T ss_dssp             E--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEE-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHH
T ss_pred             cccccccccccccceecccccccccccccccCchhccccceeccccccccccccccccccccccccccCcHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccc-cccccccccccc
Q 013459           81 LLQLPFAA-------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV-LKHENLGEYFDS  140 (442)
Q Consensus        81 ~~~~~~~~-------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~~~~~~~~~~~  140 (442)
                      +.+.+..+                   ...+.||++..++.. ....++++.++++++++.|+..+. +.+++       
T Consensus       207 l~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~vv~~~-------  278 (441)
T PF01425_consen  207 LAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ-WVPVDPEVRRAFEEAAEALEAAGAEVVEVD-------  278 (441)
T ss_dssp             HBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG--SSTSSHHHHHHHHHHHHHHHHTT-EEEEE--------
T ss_pred             hcCCCccCCCccccccccccccccccccccCccccccccccc-cccccHHHHHHHHHHHHhhccccccccccc-------
Confidence            98654221                   224568888877541 124678899999999999973332 12222       


Q ss_pred             cCCchhhhhccchhHHHHHHHHHHHHHHHh------hHHHH-HhhCCCCCHhHHHHHHhcccCC-----HHHHHHHHHHH
Q 013459          141 KVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWI-ESVKPALDPDISAEIGEMLEIS-----ETVIENCKSIR  208 (442)
Q Consensus       141 ~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~r  208 (442)
                       +|.+...       ...+..+...++...      +..++ ......+.+.+..++..+...+     ...|.++++.|
T Consensus       279 -~p~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r  350 (441)
T PF01425_consen  279 -LPDLDEA-------MDAYYRIFVSEGAANLARYKDFARLLAKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRR  350 (441)
T ss_dssp             --TTGGHH-------HHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHH
T ss_pred             -CchHHHH-------HHHHhhhHHHHHHHHHhhhhHHHHhhhcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHH
Confidence             2332221       122233333333322      12222 2233446666666666554322     23389999999


Q ss_pred             HHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcc--cHH---HHHHHhhhhccccccccceeeecCccC-CCCceeEEE
Q 013459          209 NEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML--SED---YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSF  282 (442)
Q Consensus       209 ~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~--~~~---~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~  282 (442)
                      ..+++.+.++|+++|+||+|+++.+||.++.....  ...   .......+|.++|++|+|++++|++.. +|+|+|+|+
T Consensus       351 ~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvql  430 (441)
T PF01425_consen  351 ARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQL  430 (441)
T ss_dssp             HHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEE
T ss_pred             HHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEE
Confidence            99999999999999999999999999999876431  111   122344567999999999999999997 899999999


Q ss_pred             ecccCCcHHHH
Q 013459          283 IARHGGDRFLL  293 (442)
Q Consensus       283 ~~~~~~d~~ll  293 (442)
                      ++++++|+.++
T Consensus       431 vg~~~~D~~LL  441 (441)
T PF01425_consen  431 VGRPGSDEKLL  441 (441)
T ss_dssp             EESTTBHHHHH
T ss_pred             ECCCCCccCcC
Confidence            99999998875

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK06828 amidase; Provisional

Probab=100.00  E-value=2.1e-49  Score=378.11  Aligned_cols=262  Identities=20%  Similarity=0.239  Sum_probs=198.5

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+++|++.++++
T Consensus       168 ~pGGSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~  247 (491)
T PRK06828        168 FVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS  247 (491)
T ss_pred             CCCcCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---------------------CCCCceEEEccc-chhhcCCchhHHHHHHHHHHHHHh--cccccccccccc
Q 013459           81 LLQLPFAA---------------------QRSPRQIIIADD-CFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE  136 (442)
Q Consensus        81 ~~~~~~~~---------------------~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~  136 (442)
                      +.+.+..+                     ...+.||++..+ +.... ..++++.++++++++.|+  |+.+++.+.++ 
T Consensus       248 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p-  325 (491)
T PRK06828        248 LTGVDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYY-ESGEYDEKLFKETIEVLRSEGATVVEDIDIP-  325 (491)
T ss_pred             HhCCCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCcccccc-CCCHHHHHHHHHHHHHHHhcCCEEEecccCc-
Confidence            98643211                     134567887432 11111 256789999999999997  55443223222 


Q ss_pred             cccccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHH----------------------HhhCCCCCHhHHH-HHHhc
Q 013459          137 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------------ESVKPALDPDISA-EIGEM  193 (442)
Q Consensus       137 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------------~~~~~~~~~~~~~-~~~~~  193 (442)
                             .+...       .  ...+...|+...+..++                      ..+...+++.... .+..+
T Consensus       326 -------~~~~~-------~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  389 (491)
T PRK06828        326 -------SFHRE-------W--SWGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFP  389 (491)
T ss_pred             -------cchhH-------H--HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcC
Confidence                   11110       0  00111122222222221                      1222356665444 45567


Q ss_pred             ccCCHHHHHHHHHHHHHHH--HHHHhhccC--CCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeec
Q 013459          194 LEISETVIENCKSIRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP  269 (442)
Q Consensus       194 ~~~~~~~~~~a~~~r~~~~--~~~~~~~~~--~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p  269 (442)
                      ..++..+|.++++.|..+.  +.++++|++  +|+||+||++..                      .++|++|+|+++||
T Consensus       390 ~~~~~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP  447 (491)
T PRK06828        390 NTLRNPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIP  447 (491)
T ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEee
Confidence            7788899999998888754  699999984  899999999764                      23468999999999


Q ss_pred             CccC-CCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459          270 LGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       270 ~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      +|.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus       448 ~G~~~~GlPvGlQlig~~~~D~~LL~~A~a~E~~  481 (491)
T PRK06828        448 AGYMEGGRPFGITLASTAFSEGTLIKLAYAFEQA  481 (491)
T ss_pred             cCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            9986 89999999999999999999999998875

>PRK11910 amidase; Provisional

Probab=100.00  E-value=9.6e-48  Score=366.64  Aligned_cols=261  Identities=21%  Similarity=0.332  Sum_probs=192.7

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||+|||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||||||+|++.++++
T Consensus       314 ~pGGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~v  393 (615)
T PRK11910        314 DPSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNA  393 (615)
T ss_pred             CCCCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-----CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccch
Q 013459           81 LLQLPFAA-----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG  153 (442)
Q Consensus        81 ~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~  153 (442)
                      |.+.+..+     ...+.||+++.+.      .++++.++++++++.|+  |+.+++...+        |.+..      
T Consensus       394 i~g~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~~--------p~~~~------  453 (615)
T PRK11910        394 LTNTTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIAV--------GEFEQ------  453 (615)
T ss_pred             hcCCCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCCC--------ccHHH------
Confidence            98654321     2456788886431      23567788888888886  5544322222        22211      


Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHhhCCC--------------------CCHhHHHHHHhcc-cCCHHHH-HHHHHHHHHH
Q 013459          154 ELKNVMRLIQRYEFKNNHNEWIESVKPA--------------------LDPDISAEIGEML-EISETVI-ENCKSIRNEM  211 (442)
Q Consensus       154 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~~~~~~~-~~a~~~r~~~  211 (442)
                       ....+..++..|+...+..|+......                    +++.  ..+..+. ..+..++ ..+++.|+.+
T Consensus       454 -~~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (615)
T PRK11910        454 -KDTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQSS  530 (615)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHHH
Confidence             222344455567777777766432221                    2222  1111111 1343332 3356677788


Q ss_pred             HHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC--CCCceeEEEecccC
Q 013459          212 RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHG  287 (442)
Q Consensus       212 ~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~--~~lp~g~~~~~~~~  287 (442)
                      ++.++.+|+  ++|+||+|+....                    .....+++|+|+++||+|..  +|+|+|+||+++++
T Consensus       531 ~~~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~  590 (615)
T PRK11910        531 QNELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARN  590 (615)
T ss_pred             HHHHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCC
Confidence            888999996  7999999974211                    01123489999999999976  49999999999999


Q ss_pred             CcHHHHHHHHHHHHHHH
Q 013459          288 GDRFLLDTVQNMYASLQ  304 (442)
Q Consensus       288 ~d~~ll~~~~~~~~~~~  304 (442)
                      .|..+++++..+|+..+
T Consensus       591 sE~~LL~~A~a~Eq~t~  607 (615)
T PRK11910        591 SDKILLNMGYAYEQQSK  607 (615)
T ss_pred             CHHHHHHHHHHHHHhcC
Confidence            99999999999988644

>PRK06707 amidase; Provisional

Probab=100.00  E-value=5.3e-47  Score=363.17  Aligned_cols=258  Identities=24%  Similarity=0.321  Sum_probs=192.4

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||+|||+|++++|||||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|||+|++.++++
T Consensus       223 ~pGGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~  302 (536)
T PRK06707        223 DTSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNA  302 (536)
T ss_pred             CCCCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---------------------CCCCceEEEcccchhhcCCchhHHHHH-HHHHHHHHh--cccccccccccc
Q 013459           81 LLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGE  136 (442)
Q Consensus        81 ~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~--g~~~~~~~~~~~  136 (442)
                      |.+.+..+                     ...++||++..+..     ..+++.++ ++++++.|+  |+.+++.+.+  
T Consensus       303 ~~g~d~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l--  375 (536)
T PRK06707        303 MIGYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQL--  375 (536)
T ss_pred             HcCCCCCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCC--
Confidence            98644221                     13557888765431     23556666 577777776  5555321222  


Q ss_pred             cccccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCC----------C-CHhHHHHHHhcccC---------
Q 013459          137 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPA----------L-DPDISAEIGEMLEI---------  196 (442)
Q Consensus       137 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~---------  196 (442)
                            |...        . . ...+...|+..++..|+......          + .+....++..+...         
T Consensus       376 ------~~~~--------~-~-~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (536)
T PRK06707        376 ------NNGG--------V-D-NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAI  439 (536)
T ss_pred             ------chhh--------H-H-HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhccc
Confidence                  2100        0 1 11233456666665554322100          1 24445555444322         


Q ss_pred             CHHHH-HHHHHHHHHHHHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC
Q 013459          197 SETVI-ENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY  273 (442)
Q Consensus       197 ~~~~~-~~a~~~r~~~~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~  273 (442)
                      +.++| ..+.+.|+.+++.++++|+  ++|+||+|...                      .+.++|++|+|+++||+|..
T Consensus       440 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~~----------------------~t~~an~aG~PaitvP~G~~  497 (536)
T PRK06707        440 TKDEFEKVVQTSQENAKKELDRYLVEKGLDALVMINNE----------------------EVLLSAVAGYPELAVPAGYD  497 (536)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCCC----------------------cchhhHhcCCCeEEEecccC
Confidence            12233 3566778888999999998  89999998320                      15678999999999999987


Q ss_pred             -CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          274 -DKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       274 -~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                       +|+|+|+||+++++.|..++.++..+|+..
T Consensus       498 ~~GlP~Glqlig~~~~e~~LL~~A~~~E~~~  528 (536)
T PRK06707        498 NNGEPVGAVFVGKQFGEKELFNIGYAYEQQS  528 (536)
T ss_pred             CCCCCeEEEEECCCCChHHHHHHHHHHHHhC
Confidence             899999999999999999999999988754

>PRK06565 amidase; Validated

Probab=100.00  E-value=5.9e-45  Score=345.06  Aligned_cols=299  Identities=19%  Similarity=0.174  Sum_probs=193.5

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|+++||+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+||++|++.++++
T Consensus       158 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~v  237 (566)
T PRK06565        158 FASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDV  237 (566)
T ss_pred             CCCCCCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc--------------------------------CCCCceEEEcccchhhcC------------------Cchh
Q 013459           81 LLQLPFAA--------------------------------QRSPRQIIIADDCFELLK------------------IPAD  110 (442)
Q Consensus        81 ~~~~~~~~--------------------------------~~~~~~i~~~~~~~~~~~------------------~~~~  110 (442)
                      |.+.+..+                                ...++||+++..++....                  ...+
T Consensus       238 l~g~D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (566)
T PRK06565        238 IVADDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRP  317 (566)
T ss_pred             hcCCCcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCH
Confidence            98643211                                124578888765542110                  1246


Q ss_pred             HHHHHHHHHHHHHh--ccccccccccccc--ccccCC---chhhhhccchhHHHHHHHHHHHH-HHHhhHHHHHhhCC--
Q 013459          111 RVVQVVIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SLKGFHKTNGELKNVMRLIQRYE-FKNNHNEWIESVKP--  180 (442)
Q Consensus       111 ~~~~~~~~a~~~l~--g~~~~~~~~~~~~--~~~~~p---~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~--  180 (442)
                      ++.+.++++++.|+  |+.++ +++++.+  ++...+   .+.+......++    ....... ....++.|+....+  
T Consensus       318 ~v~~~~~~a~~~L~~~Ga~vv-~v~~p~~~~~e~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~~~~~~yL~~~~~~~  392 (566)
T PRK06565        318 SVIDLWEAARRALEAAGAEVI-EVDFPLVSNCEGDRPGAPTVFNRGLVSPEF----LHDELWELSGWAFDDFLRANGDPK  392 (566)
T ss_pred             HHHHHHHHHHHHHHHCCCEEE-EeecCCccccccccccccccccccccchhh----hhccccchhHHHHHHHHHhcCCCC
Confidence            78999999999997  55543 3444321  111000   000000000000    0000000 00112233322210  


Q ss_pred             -----------------CCCHh----HHHH---HHh----c-cc-CCHHHHHHHHHHHHHHHH-HHHhhcc--CCCEEEe
Q 013459          181 -----------------ALDPD----ISAE---IGE----M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILVT  227 (442)
Q Consensus       181 -----------------~~~~~----~~~~---~~~----~-~~-~~~~~~~~a~~~r~~~~~-~~~~~~~--~~d~li~  227 (442)
                                       ..-|.    ....   +..    + .. .....|.+.++.++..++ .+++.|+  +.|+||+
T Consensus       393 ~~sl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~  472 (566)
T PRK06565        393 LNRLADVDGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLF  472 (566)
T ss_pred             CCCHHHhhhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence                             00010    0000   000    1 11 112334555555555554 5666665  5689999


Q ss_pred             eCCCCCCCCCCCCCcccHHHHHHH---hhh-hccccccccceeeecCccC--CCCceeEEEecccCCcHHHHHHHHHHHH
Q 013459          228 PTTAYPPPKLGGKEMLSEDYQNRA---FSL-LSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMYA  301 (442)
Q Consensus       228 Pt~~~~a~~~~~~~~~~~~~~~~~---~~~-t~~~n~~g~p~~~~p~~~~--~~lp~g~~~~~~~~~d~~ll~~~~~~~~  301 (442)
                      |+.+..+|...+..........+.   ... ....+++|+|+|+||+|..  .|||+|++|+++.++|..++.++..+|+
T Consensus       473 P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~  552 (566)
T PRK06565        473 PTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEA  552 (566)
T ss_pred             CCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHH
Confidence            999999887765433322121111   111 2344889999999999987  6999999999999999999999999998


Q ss_pred             HHH
Q 013459          302 SLQ  304 (442)
Q Consensus       302 ~~~  304 (442)
                      ..+
T Consensus       553 ~~~  555 (566)
T PRK06565        553 TGS  555 (566)
T ss_pred             Hhc
Confidence            654

>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-43  Score=325.57  Aligned_cols=291  Identities=27%  Similarity=0.333  Sum_probs=198.8

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||+|||+++++||+|||||||+|+||++|||+|||||+|++|+.|++|++.++|++||+||++.|+..++++
T Consensus       162 v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~  241 (506)
T KOG1211|consen  162 VPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGA  241 (506)
T ss_pred             cCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcccchhHHHhhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc--------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459           81 LLQLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF  138 (442)
Q Consensus        81 ~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~  138 (442)
                      +.+.+..+                    ...+.|++|+..+....  ....+.+.+++..++|.  |..+ .+..++...
T Consensus       242 ~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~~~lp~~~  318 (506)
T KOG1211|consen  242 IVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV-NEVSLPTTI  318 (506)
T ss_pred             hcCCCccCcccccCCcccccchhhcccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc-eeeecchhh
Confidence            87654322                    23456778877765433  23678888888777775  3332 333333221


Q ss_pred             cccCCchhhhhccchhHHHHHHHHHHHHHHHh---------hHHHHHh-hCCCCCHhHHHHHHhcc-----cCCHHHHHH
Q 013459          139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN---------HNEWIES-VKPALDPDISAEIGEML-----EISETVIEN  203 (442)
Q Consensus       139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~  203 (442)
                      ....++-      .....++...+.+++....         ..++... +...+..++..++..+.     ......+.+
T Consensus       319 ~~~~~~~------~~s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~  392 (506)
T KOG1211|consen  319 NGLCGYS------LSSASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEK  392 (506)
T ss_pred             hcccccc------ccchhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehhhhhhHHHHHH
Confidence            1111110      0012233444444433221         1111111 11223334444443321     112233456


Q ss_pred             HHHHHHHHHHHHH---hhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCCcee
Q 013459          204 CKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTS  279 (442)
Q Consensus       204 a~~~r~~~~~~~~---~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g  279 (442)
                      +++.|+.....+.   +.+++.|+|++||.+.+.+..-.. ............+++++|++|+|++++|+|.. +|+|+|
T Consensus       393 a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~-~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~g  471 (506)
T KOG1211|consen  393 ALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEK-ETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIG  471 (506)
T ss_pred             HHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhh-cccccccccccceeecccccCCCceEEeeeecCCCCceE
Confidence            7778888877777   678899999999944433322221 11111222334579999999999999999988 899999


Q ss_pred             EEEecccCCcHHHHHHHHHHHH
Q 013459          280 VSFIARHGGDRFLLDTVQNMYA  301 (442)
Q Consensus       280 ~~~~~~~~~d~~ll~~~~~~~~  301 (442)
                      +|+++..+.|..+..++..+++
T Consensus       472 lqi~g~~~~e~~~~~l~~~~~~  493 (506)
T KOG1211|consen  472 LQIMGGAFAEPTLIDLALAIGQ  493 (506)
T ss_pred             EEeecccccchHHHHHHHhhcc
Confidence            9999999999988888876655

>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=293.76  Aligned_cols=281  Identities=21%  Similarity=0.249  Sum_probs=183.6

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCC----CCcccccccCCHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRH   76 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~----~~d~~Gp~ar~~~d~~~   76 (442)
                      +|||||||+||++|+|.++||||||+|||||+||+|||++|+|||.+|+|..|+.|..+    ..-++|||+|+++|+..
T Consensus       199 t~GGSSGGEaALigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~  278 (560)
T KOG1212|consen  199 TPGGSSGGEAALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVL  278 (560)
T ss_pred             CCCCCchHHHHHHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999887643    44578999999999999


Q ss_pred             HHHHhhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccc
Q 013459           77 VGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEY  137 (442)
Q Consensus        77 ~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~  137 (442)
                      ++..+.+.....                 ...+.++++..+..  ...+.+.+.+++.+.++.++  |+.++ ...++  
T Consensus       279 ~L~~~i~~~~~~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~dg--~~~~~pa~~RAv~~~~~~l~~~g~~~~-~f~~~--  353 (560)
T KOG1212|consen  279 LLRLMIGDSGPKLLDPYPVPVKFMEVFYKSSDKLVIGYYVDDG--FFDPSPAMQRAVQETIDLLEKAGHEVV-PFDLP--  353 (560)
T ss_pred             HHHHhcCCccccccCCCCCCchhhhhhhhccCCccceEEecCC--CCCcCHHHHHHHHHHHHHHHhcCccee-EecCC--
Confidence            999887643110                 12234455542211  12366788888888877775  55542 22222  


Q ss_pred             ccccCCchhhhhccchhHHHHHHHHHHH------HH--HHhhHHHHHhh--CCCCCHhHHH-----------HHHhcccC
Q 013459          138 FDSKVPSLKGFHKTNGELKNVMRLIQRY------EF--KNNHNEWIESV--KPALDPDISA-----------EIGEMLEI  196 (442)
Q Consensus       138 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~------e~--~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~  196 (442)
                            .+..       ..+.+..+...      +.  ...+.......  -..+......           .+....+.
T Consensus       354 ------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~  420 (560)
T KOG1212|consen  354 ------DLKH-------VADMFFRVMPDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNS  420 (560)
T ss_pred             ------cchH-------HHHHHHHHcccccchhhHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhccc
Confidence                  1110       00000000000      00  00000000000  0001100000           11122233


Q ss_pred             CHHHHHHHHHHHHHHHHHHHh--hccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCcc--
Q 013459          197 SETVIENCKSIRNEMRSAISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY--  272 (442)
Q Consensus       197 ~~~~~~~a~~~r~~~~~~~~~--~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~--  272 (442)
                      ...+.++.+..++.++.++..  ...+.|+||+|+.+.+||+|+.....     ...+.||.+||++|+|+.+||+++  
T Consensus       421 ~~~~~~~~~~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~-----~~~~~Yt~LfN~Ld~Pag~vpvt~v~  495 (560)
T KOG1212|consen  421 DTAELRQNYEDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLL-----VNGFSYTGLFNVLDFPAGVVPVTTVT  495 (560)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhh-----ccchhHHHHHHhccCCcccccccccc
Confidence            334444455555555544444  44688999999999999999854322     234579999999999977776532  


Q ss_pred             ------------------------C-CCCceeEEEecccCCcHHHHHHHHHHHHHHH
Q 013459          273 ------------------------Y-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  304 (442)
Q Consensus       273 ------------------------~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~  304 (442)
                                              . .|||+|+|+++.+++|+.+++.+..+++.+.
T Consensus       496 ~~d~~~~~~~~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~g  552 (560)
T KOG1212|consen  496 QKDEKEEEYPMNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFG  552 (560)
T ss_pred             hhhhcccccccccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhC
Confidence                                    2 6999999999999999999999999988654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=4.4e-18  Score=145.16  Aligned_cols=121  Identities=40%  Similarity=0.579  Sum_probs=116.0

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      +....++.+...|+.+++.++|++|+..|.+||+++|.++..|.+++.+|.++|.|+.|+++|+.++.++|+..++|..+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      |.+|..+|++++|++.|+++++++|+|+..+..|..+++.+
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999887654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.71  E-value=5.6e-16  Score=124.49  Aligned_cols=112  Identities=13%  Similarity=0.109  Sum_probs=107.7

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  408 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~  408 (442)
                      ++.+|..+++.|+|++|+..|++++.++|++..++..+|.++.++|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          409 YYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       409 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++++|++.|++++++.|+++..+..++.+...
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999888877654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.65  E-value=8.6e-15  Score=115.03  Aligned_cols=109  Identities=9%  Similarity=-0.013  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ++..+..+.+|..++..|++++|+..|+-...++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.++++.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      |+...|+.+.|.+.|+.++....+++.-.
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~  140 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEVSEHQ  140 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence            99999999999999999999985444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.63  E-value=1.9e-14  Score=115.25  Aligned_cols=121  Identities=16%  Similarity=0.186  Sum_probs=113.9

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|.+....+.+|..+++.|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++.+|.+...++.+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            34677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      |.++...|++++|++.|+++++++|++........++.+.+
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777776554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.60  E-value=3.1e-14  Score=132.12  Aligned_cols=114  Identities=35%  Similarity=0.495  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      .+...|..++..++|++|+.+|+++++++|++..+++++|.+|.++|++++|+.+++++++++|.+..+++.+|.+|..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          408 GYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       408 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      |+|++|+.+|+++++++|++..+...+..+...+
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1e-13  Score=127.09  Aligned_cols=118  Identities=41%  Similarity=0.603  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |..+......|+.+|+.|+|.+|+.+|+++|..+|++...|.+++.||.+++++..|+++++.+++++|++..+|+..|.
T Consensus       355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~  434 (539)
T KOG0548|consen  355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA  434 (539)
T ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            56677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++..+.+|++|.+.|+++++++|++.++...+.+|.+.
T Consensus       435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.57  E-value=8.3e-14  Score=118.02  Aligned_cols=120  Identities=23%  Similarity=0.252  Sum_probs=108.6

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhcCCccHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~~l~~~p~~~~  395 (442)
                      +..+|.+.+.|+.+|..+...|++++|+..|+++++++|++..++..+|.++ ...|+  +++|.+.++++++++|++..
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~  145 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT  145 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence            4445889999999999999999999999999999999999999999999975 67787  59999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +++++|.++.+.|++++|+++|+++++++|.+..-...++.++
T Consensus       146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~  188 (198)
T PRK10370        146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN  188 (198)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            9999999999999999999999999999987765555545444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.52  E-value=2.2e-13  Score=126.59  Aligned_cols=122  Identities=21%  Similarity=0.154  Sum_probs=115.1

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      .-.|+-+.++.++|..|.++|++++|+.+|++++.+.|...+++.++|..|-.+|+...|+++|.+++..+|...+++.+
T Consensus       382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN  461 (966)
T KOG4626|consen  382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN  461 (966)
T ss_pred             hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence            34478888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      +|.+|...|+.++|++.|+.+++++|+.+++..++..+.+.+
T Consensus       462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v  503 (966)
T KOG4626|consen  462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV  503 (966)
T ss_pred             HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence            999999999999999999999999999999999998887653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=3.2e-13  Score=120.54  Aligned_cols=118  Identities=36%  Similarity=0.485  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------------NATYYSNRAAAYLESGSFLQAEADCTKAIN  388 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  388 (442)
                      ..+......|+.+++.|+|..|+..|++++..-..               -..++.|++.||.++++|.+|+..+.++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            35667788899999999999999999999876331               135788999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       389 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      ++|+|..++|..|.++..+++|+.|+..|+++++++|+|..+...+..|++..
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.51  E-value=1.1e-13  Score=128.61  Aligned_cols=117  Identities=24%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |..+.++-++|.+|+.+|+.+-|+..|+++++++|+.+++|.++|+++-..|+..||+.+|.+++.+.|+.+++++++|.
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            55555555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|.++|.+++|...|+++++..|+...+..+++.+.+
T Consensus       363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k  399 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK  399 (966)
T ss_pred             HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence            6666666666666666666666666666666665554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.50  E-value=9.6e-13  Score=119.57  Aligned_cols=107  Identities=22%  Similarity=0.216  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +..+..++.+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+++++|.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      ++...|++++|++.|+++++++|+++.
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999974

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.43  E-value=5.2e-12  Score=98.57  Aligned_cols=110  Identities=17%  Similarity=0.171  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR  399 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~  399 (442)
                      ++.++..|..+++.|+|++|+..|+++++.+|++   ..+++.+|.++.+.+++++|+..|++++..+|++   ..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   5789999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      +|.++.+++++++|.+.++++++..|++..+.....
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            999999999999999999999999999987765544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=3.1e-13  Score=126.89  Aligned_cols=120  Identities=22%  Similarity=0.176  Sum_probs=92.0

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      +..+|..++.|..+|+++--+++++.|+++|+++++++|.+.-+|..+|.=+....+++.|..+|++++..+|.+-.+||
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY  493 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY  493 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence            44557778888888888888888888888888888888887777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .+|.+|.++++++.|+-+|++|++++|.|..+.-.++...
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~  533 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ  533 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH
Confidence            7777777777777777777777777777766655555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.41  E-value=6.5e-12  Score=126.51  Aligned_cols=117  Identities=20%  Similarity=0.185  Sum_probs=84.3

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|++++.++|++..+++++|
T Consensus       361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la  440 (615)
T TIGR00990       361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG  440 (615)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence            35556667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .++.++|++++|+..|+++++.+|+++.++..++.+.
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~  477 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL  477 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            7777777777777777777777777777666665554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=5.3e-12  Score=104.04  Aligned_cols=123  Identities=20%  Similarity=0.085  Sum_probs=112.5

Q ss_pred             ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcc
Q 013459          316 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKN  393 (442)
Q Consensus       316 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~  393 (442)
                      .+.+..+|+...+|..+|..|.+.|+.+.|-+.|+++++++|++.++++|.|..++.+|+|++|.+.|++++..  .+..
T Consensus        59 ekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~  138 (250)
T COG3063          59 EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP  138 (250)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc
Confidence            33455668999999999999999999999999999999999999999999999999999999999999999874  2455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ...+-|+|.|..+.|+++.|..+|+++++++|+++.....+...+
T Consensus       139 s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~  183 (250)
T COG3063         139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH  183 (250)
T ss_pred             chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence            779999999999999999999999999999999999888887765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.4e-11  Score=110.99  Aligned_cols=119  Identities=20%  Similarity=0.195  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |....+|-.+|..|....+...|++.|++|++++|.+..+|+.+|+.|.-++-+.-|+-+|++++.+.|++...|..+|.
T Consensus       361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~  440 (559)
T KOG1155|consen  361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE  440 (559)
T ss_pred             cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      ||.++++.++|+++|.+++.....+..++..++++.+.+
T Consensus       441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l  479 (559)
T KOG1155|consen  441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL  479 (559)
T ss_pred             HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887654

>PRK15331 chaperone protein SicA; Provisional

Probab=99.37  E-value=2.9e-11  Score=95.58  Aligned_cols=115  Identities=14%  Similarity=0.061  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ++.-+..+..|..++++|+|++|...|.-....++.+++.+..||.|+..+++|++|+..|..+..++++++...|..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            56677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ||..+|+.+.|.++|+.+++ .|.+.........+.
T Consensus       114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L  148 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL  148 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence            99999999999999999998 577776665554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.37  E-value=3.6e-12  Score=110.59  Aligned_cols=112  Identities=46%  Similarity=0.601  Sum_probs=107.6

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  408 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~  408 (442)
                      +.+.|+.||++|+|+||+.+|.+++..+|.++..+.+++.+|+++++|..|..+|..++.++.....+|...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          409 YYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       409 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ...+|.+.++.++++.|++.+....++.+..+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl  211 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINSL  211 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence            99999999999999999999999888887653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.37  E-value=1.5e-11  Score=124.02  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=112.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|..+..++.+|.+++..|++++|+..|+++++++|++...+..+|.++..+|++++|+..|+++++++|+++.+++.+|
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .++..+|++++|+.+|+++++++|++...+..++.+.
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            9999999999999999999999999999888877665

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=1.7e-11  Score=98.47  Aligned_cols=118  Identities=34%  Similarity=0.469  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      -..+..+...|+.+|++|+|.+|..-|..+|++.|..     .-.|.++|.+.++++.++.|+..+.++++++|.+..++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            3467788899999999999999999999999999875     35788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ...|.+|.++..|++|+..|.+.++++|...++...+.++..+
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~  214 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK  214 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence            9999999999999999999999999999999988888776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.36  E-value=2.1e-11  Score=121.28  Aligned_cols=122  Identities=5%  Similarity=-0.052  Sum_probs=113.3

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ....+..+++++.+|....+.|++++|..+++.++++.|++..++.+++.++.+++++++|+..+++++..+|++..+++
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      .+|.++.++|+|++|...|++++..+|+++.++..++.+.+.
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.34  E-value=1.8e-11  Score=126.42  Aligned_cols=116  Identities=12%  Similarity=0.011  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |. ...+..+|.++.+.|++++|+..|+++++++|++..++.++|.++.+.|++++|+..|+++++++|+++.+++++|.
T Consensus       607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~  685 (987)
T PRK09782        607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY  685 (987)
T ss_pred             CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44 67889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++..+|++++|+++|+++++++|++.......+.+++
T Consensus       686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence            9999999999999999999999999888877776654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.34  E-value=3.3e-11  Score=99.39  Aligned_cols=115  Identities=17%  Similarity=0.068  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ...+.+..++|..|++.|++..|...++++++.+|++..+|..++.+|.+.|+.+.|.+.|+++++++|++.+.+.|+|.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVL--EPTNKRASLSADRL  437 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~  437 (442)
                      -++.+|++++|.+.|++++..  .+.-...+.+++-|
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C  148 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC  148 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence            999999999999999999864  33444555555554

>PLN02789 farnesyltranstransferase

Probab=99.32  E-value=4.4e-11  Score=108.58  Aligned_cols=120  Identities=15%  Similarity=0.026  Sum_probs=112.0

Q ss_pred             cccchHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCccHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~~~p~~~~  395 (442)
                      +.-+|....+|..++.++...+ ++++++..++++++.+|++..+|+.++.++.++++.  ++++.+++++++.+|.|..
T Consensus        64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~  143 (320)
T PLN02789         64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH  143 (320)
T ss_pred             HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence            3445889999999999999998 689999999999999999999999999999999874  7889999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +|..++.++..++++++|++++.++++.+|.|..+|.+...+.
T Consensus       144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999888764

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=3.5e-11  Score=119.15  Aligned_cols=117  Identities=10%  Similarity=-0.041  Sum_probs=97.4

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      +|.++.++..+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+.+++++++++|.+...++.++
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~  413 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL  413 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            46777888888888888888999999999998888888888888888888889999999999999888888877777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLE-PTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~  438 (442)
                      .++...|++++|++.++++++.. |+++.++..++.+.
T Consensus       414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            77777888888888888888774 67777777666554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.32  E-value=5.5e-11  Score=100.22  Aligned_cols=120  Identities=15%  Similarity=0.153  Sum_probs=112.1

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ...++.+...+...|...++.|+|.+|+..+.++..+.|++..+|..+|.+|.+.|++++|...|.+++++.|+++.+..
T Consensus        93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n  172 (257)
T COG5010          93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN  172 (257)
T ss_pred             hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence            44456666777779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      |+|..|.-.|+++.|..++.++...-+.+..+..++..+.
T Consensus       173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            9999999999999999999999999998999998888764

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=5.9e-11  Score=117.58  Aligned_cols=115  Identities=17%  Similarity=0.074  Sum_probs=104.0

Q ss_pred             cccchHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          319 TFNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ...+|..+..+..+|.++...         +++++|+..++++++++|++..++..+|.++...|++++|+..|++++++
T Consensus       288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  367 (553)
T PRK12370        288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL  367 (553)
T ss_pred             HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344577888888888877643         45899999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       390 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      +|++..+++.+|.++...|++++|+..++++++++|++......
T Consensus       368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            99999999999999999999999999999999999998765433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.31  E-value=9.2e-11  Score=106.63  Aligned_cols=118  Identities=18%  Similarity=0.121  Sum_probs=93.5

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH------
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------  394 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------  394 (442)
                      ..|..+.+++.+|..+...|+|++|+..|+++++++|++..++.++|.++...|++++|++.|+++++++|+++      
T Consensus        93 l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  172 (296)
T PRK11189         93 LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL  172 (296)
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999998888777655432      


Q ss_pred             ----------------------------------------------------------------HHHHHHHHHHHHcCCH
Q 013459          395 ----------------------------------------------------------------KAYLRRGTAREMLGYY  410 (442)
Q Consensus       395 ----------------------------------------------------------------~~~~~~a~~~~~~~~~  410 (442)
                                                                                      ++|+++|.++.++|++
T Consensus       173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~  252 (296)
T PRK11189        173 YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL  252 (296)
T ss_pred             HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence                                                                            2455667777777777


Q ss_pred             HHHHHHHHHHHhhCC-CChHHHHHHHHHH
Q 013459          411 KEAIEDFSYALVLEP-TNKRASLSADRLR  438 (442)
Q Consensus       411 ~~A~~~~~~~l~~~p-~~~~~~~~l~~~~  438 (442)
                      ++|+.+|+++++.+| +..+....+-++.
T Consensus       253 ~~A~~~~~~Al~~~~~~~~e~~~~~~e~~  281 (296)
T PRK11189        253 DEAAALFKLALANNVYNFVEHRYALLELA  281 (296)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            777777777777775 5555544444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.31  E-value=9.5e-11  Score=103.14  Aligned_cols=114  Identities=13%  Similarity=0.044  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHH-HhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHH
Q 013459          326 AEIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYL  398 (442)
Q Consensus       326 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~  398 (442)
                      ....+..|..+ ++.++|++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45667777776 66799999999999999999998   5799999999999999999999999999988874   78999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .+|.++..+|++++|.+.|+++++..|++..+.....++..
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~  262 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA  262 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999988877777643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.31  E-value=7.9e-11  Score=98.14  Aligned_cols=111  Identities=23%  Similarity=0.254  Sum_probs=100.6

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  394 (442)
                      .....+..+..++.+|..+...|++++|+.+|+++++..|+.   ..++..+|.++.++|++++|+..++++++.+|.+.
T Consensus        27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  106 (172)
T PRK02603         27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP  106 (172)
T ss_pred             ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            344567888899999999999999999999999999887653   46899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCh
Q 013459          395 KAYLRRGTAREMLGY--------------YKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~  428 (442)
                      .++..+|.++..+++              +++|.++++++++.+|++-
T Consensus       107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            999999999999887              6789999999999999874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.30  E-value=1.2e-11  Score=86.04  Aligned_cols=66  Identities=33%  Similarity=0.505  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK  391 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p  391 (442)
                      +..|+.+|..++..++|++|+..|+++++++|+++.+++++|.++.++| ++++|+++++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3445555555555555555555555555555555555555555555555 45555555555555444

...

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=3.5e-11  Score=113.32  Aligned_cols=121  Identities=19%  Similarity=0.128  Sum_probs=115.5

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      -.|..-.+||-+|.+|+++++++.|.-+|++|++++|.+.....-+|..+.++|+.++|+..|++|+.++|.++-..|..
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            34788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      |.++..+++|++|+..+++..++-|++..++..++++.+.+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.30  E-value=1.5e-11  Score=85.43  Aligned_cols=68  Identities=43%  Similarity=0.596  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 013459          358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEP  425 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p  425 (442)
                      +++..|..+|.++++.++|++|+..|+++++++|++..+++++|.++..+| ++++|+++++++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            357889999999999999999999999999999999999999999999999 79999999999999998

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.30  E-value=6e-11  Score=88.11  Aligned_cols=99  Identities=39%  Similarity=0.570  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      .++.+|..++..|++++|+..++++++..|++..++..+|.++...+++++|+++|++++...|.+...++.++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC
Q 013459          408 GYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       408 ~~~~~A~~~~~~~l~~~p~  426 (442)
                      |++++|.+.++++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988874

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.29  E-value=1.8e-11  Score=110.89  Aligned_cols=118  Identities=19%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .+.+...|...|.++.+.|++++|+..|+++++++|++..+...++.++...|+++++...++...+..|.++..+..+|
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la  221 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA  221 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999998888888999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++..+|++++|+.+|+++++.+|+|+.....++.+..
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~  259 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE  259 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred             HHhccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999888764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=3.5e-11  Score=108.57  Aligned_cols=117  Identities=20%  Similarity=0.242  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .++...-+|+.|...++++.|+.+|+++++++|....+|..+|.=|+.+++...|+..|++|++++|.+..+||.+|++|
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY  408 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence            44566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      .-++-..=|+-+|++++++.|++...|..+++|...+
T Consensus       409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl  445 (559)
T KOG1155|consen  409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL  445 (559)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999997543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.28  E-value=4.7e-11  Score=103.80  Aligned_cols=115  Identities=24%  Similarity=0.261  Sum_probs=107.1

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ..+|.+.+..+++|..++..|++.+|+..|..+++.+|++..+++.++.+|+.+|+-+.|+.++.+++++.|+...+...
T Consensus        32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence            34477888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      .|.++.++|++++|...|++.++.+|++.......
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq  146 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ  146 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence            99999999999999999999999999665544433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=1.8e-11  Score=113.48  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .++++..-+|..|+..++|++|+.+|+.||..+|++...|+.||..+..-.+.++|+..|.||+++.|....++|++|++
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            56778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC
Q 013459          404 REMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      |..+|.|++|.++|..+|.+.+.
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999998765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.27  E-value=4.9e-11  Score=118.71  Aligned_cols=119  Identities=13%  Similarity=-0.051  Sum_probs=109.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      -.|+...+...++..+.+.+++++|+..++++++.+|++..+++.+|.++.++|++++|+..|++++..+|++.+++..+
T Consensus       115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~  194 (694)
T PRK15179        115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGW  194 (694)
T ss_pred             hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHH-HHHHHHHHh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRA-SLSADRLRK  439 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~  439 (442)
                      |.++.+.|+.++|...|+++++...+.... ...+.++++
T Consensus       195 a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  234 (694)
T PRK15179        195 AQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNA  234 (694)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence            999999999999999999999998776655 444555543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.27  E-value=1.8e-11  Score=88.64  Aligned_cols=82  Identities=27%  Similarity=0.404  Sum_probs=73.5

Q ss_pred             hcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013459          338 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  415 (442)
Q Consensus       338 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~  415 (442)
                      .+|+|++|+..|+++++.+|.  +...++.+|.|+++.|+|++|+..+++ .+.++.+...++.+|.|+.++|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  466788899999999999999999999 88888888999999999999999999999


Q ss_pred             HHHHH
Q 013459          416 DFSYA  420 (442)
Q Consensus       416 ~~~~~  420 (442)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.25  E-value=6.8e-11  Score=94.99  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          346 ISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       346 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      ..+|+++++++|++   ++.+|.++.+.|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999875   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhh
Q 013459          426 TNKRASLSADRLRKV  440 (442)
Q Consensus       426 ~~~~~~~~l~~~~~~  440 (442)
                      +++.++..++.+...
T Consensus        90 ~~~~a~~~lg~~l~~  104 (144)
T PRK15359         90 SHPEPVYQTGVCLKM  104 (144)
T ss_pred             CCcHHHHHHHHHHHH
Confidence            999999999987653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.25  E-value=1.6e-10  Score=97.93  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=94.0

Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHcCC--HHHHHH
Q 013459          339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-EMLGY--YKEAIE  415 (442)
Q Consensus       339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~  415 (442)
                      .++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|++.+++..+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHH
Q 013459          416 DFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       416 ~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .++++++++|++..++..++...
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDA  154 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHH
Confidence            99999999999999998887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.24  E-value=1.8e-10  Score=101.57  Aligned_cols=116  Identities=22%  Similarity=0.218  Sum_probs=104.1

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-  395 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-  395 (442)
                      ...+..+..++.+|..++..|+|++|+..|++++..+|+++   .+++.+|.++.+.+++++|+..|+++++.+|++.. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            34466788999999999999999999999999999999875   67899999999999999999999999999998765 


Q ss_pred             --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          396 --AYLRRGTAREML--------GYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       396 --~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                        +++.+|.++.+.        +++++|++.|+++++.+|++...+..+.
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence              799999999876        7899999999999999999987654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=8.5e-11  Score=108.19  Aligned_cols=112  Identities=39%  Similarity=0.501  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..+...|+..+..|+|+.|+.+|.++|.++|.+...|.++..+|..+++|++|+++-.+..+++|.-+.+|..+|.++..
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +|+|++|+..|.+.|+++|+|..+...+....
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999998887765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2.8e-10  Score=98.62  Aligned_cols=118  Identities=23%  Similarity=0.163  Sum_probs=107.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      ..+|++++-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+|.+++...   ...++...++++++++|.|..+
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            3458999999999999999999999999999999999999999999998887765   3779999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      .+.+|..+++.|+|.+|...+++.+++.|.+..-...+++.
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            99999999999999999999999999999877655555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.1e-10  Score=106.18  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.++.+|+.+|..++-.++|++|+..|+++++++|++.-++..++.+.++++++.+++..|+.+.+..|..++.+...|.
T Consensus       391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAe  470 (606)
T KOG0547|consen  391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAE  470 (606)
T ss_pred             CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ++..+++|++|.+.|.+|+++.|.
T Consensus       471 iLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  471 ILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHhhHHhHHHHHHHHHHHHhhccc
Confidence            555555555555555555555554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=4.5e-10  Score=98.52  Aligned_cols=115  Identities=18%  Similarity=0.155  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNVKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~  400 (442)
                      |.....+..+|..+...|++++|++.|+++++..|++..++.++|.++...|++++|++.|++++...  +.....++.+
T Consensus        62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  141 (234)
T TIGR02521        62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENA  141 (234)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHH
Confidence            45556666677777777777777777777777777766666667777777777777777777666543  3345566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      |.++...|++++|.+.++++++.+|++...+..++.+
T Consensus       142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521       142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            6666666666666666666666666666655555544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.22  E-value=2.9e-10  Score=117.69  Aligned_cols=116  Identities=18%  Similarity=0.066  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .....+..++..+...|++++|+..|+++++++|+ ..++.++|.++.++|++++|+..|++++.++|++..++.++|.+
T Consensus       574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a  652 (987)
T PRK09782        574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA  652 (987)
T ss_pred             ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            33444445555666679999999999999999996 89999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +.+.|++++|++.|+++++++|+++.++.+++.+...
T Consensus       653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.4e-10  Score=103.34  Aligned_cols=119  Identities=32%  Similarity=0.506  Sum_probs=107.5

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      .....+.....+...|+..+++|+|..|.++|.++|.++|++    ...|.+++.+...+|+.++|+.++..++++++..
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence            455567888899999999999999999999999999999986    5689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      .+++...|.|+..++++++|++.|++++++..+ .+....+.+.
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A  363 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA  363 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence            999999999999999999999999999999887 4444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1.6e-10  Score=105.04  Aligned_cols=116  Identities=20%  Similarity=0.136  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.....|..+|..|...++-++-...|+++.+++|++++.|+.+|++++-+++|++|+.+|+++++++|++.-++..++.
T Consensus       357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~  436 (606)
T KOG0547|consen  357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC  436 (606)
T ss_pred             cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence            34444489999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +.+++++++++.+.|+.+.+..|+.++.....+++.
T Consensus       437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL  472 (606)
T KOG0547|consen  437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL  472 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            999999999999999999999999999998888775

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.20  E-value=5e-10  Score=93.01  Aligned_cols=107  Identities=19%  Similarity=0.137  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ...+..++.+|..+..+|+|++|+..|++++.+.++.   ..++.++|.++.+.|++++|+..|++++.++|.+...+.+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            4578889999999999999999999999999987663   4589999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCChH
Q 013459          400 RGTARE-------MLGYYK-------EAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       400 ~a~~~~-------~~~~~~-------~A~~~~~~~l~~~p~~~~  429 (442)
                      +|.++.       .+|+++       +|...|++++..+|++..
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            999988       777766       666777788888886553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.20  E-value=6.8e-10  Score=97.39  Aligned_cols=116  Identities=20%  Similarity=0.198  Sum_probs=103.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      ....+..+..+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++.+|.+..+++++|
T Consensus        27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  106 (234)
T TIGR02521        27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG  106 (234)
T ss_pred             CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLE--PTNKRASLSADRL  437 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~  437 (442)
                      .++...|++++|.+.++++++..  +.....+..++.+
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  144 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC  144 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            99999999999999999999854  3444455444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.20  E-value=9.4e-11  Score=80.32  Aligned_cols=63  Identities=30%  Similarity=0.390  Sum_probs=35.8

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       365 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      .+|..+++.|++++|+..|+++++.+|++.++++.+|.++..+|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555555555555555555555555555555555555555555555555555555554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.18  E-value=4.5e-10  Score=113.28  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLK----AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      |.....++.+|..+...|++++    |+..|+++++++|++..++..+|.++.+.|++++|+..++++++++|++..+++
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3344455555555555555543    455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      .+|.++.+.|++++|++.|+++++.+|++..
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~  353 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREKGVTSK  353 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence            5555555555555555555555555555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.18  E-value=1.4e-10  Score=79.45  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=60.8

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459          330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  394 (442)
                      +.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++.++|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.15  E-value=1.4e-09  Score=93.20  Aligned_cols=111  Identities=19%  Similarity=0.189  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHH
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGT  402 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~  402 (442)
                      .|+.|..+++.|+|.+|...|...++..|++   +.++|.||.+++.+|+|+.|...|..+.+..|.+   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            8999999999999999999999999999986   6899999999999999999999999999988776   689999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +...+|+.++|...|+++++..|+...+......+++
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~  260 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA  260 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence            9999999999999999999999999998887776643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.14  E-value=2.4e-09  Score=94.37  Aligned_cols=117  Identities=17%  Similarity=0.081  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCC
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINLDK  391 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~~l~~~p  391 (442)
                      +....+++.+|..+++.+++++|+..|+++++.+|++..   +++.+|.++.+.        +++++|++.|++++..+|
T Consensus        67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            445578899999999999999999999999999998876   789999999887        889999999999999999


Q ss_pred             ccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHh
Q 013459          392 KNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRLRK  439 (442)
Q Consensus       392 ~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~  439 (442)
                      ++..++                 +.+|.++...|++++|+..++++++..|+++   .++..++.+..
T Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~  214 (235)
T TIGR03302       147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL  214 (235)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence            885432                 4678889999999999999999999988764   56666666543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.13  E-value=9.1e-10  Score=111.04  Aligned_cols=116  Identities=9%  Similarity=-0.028  Sum_probs=105.6

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ....|.....++.++......|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++++|++..++.
T Consensus        69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~  148 (656)
T PRK15174         69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA  148 (656)
T ss_pred             HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            44557888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      .++.++...|++++|+..+++++...|++..++..+
T Consensus       149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~  184 (656)
T PRK15174        149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC  184 (656)
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999999999999988876554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.11  E-value=9.8e-10  Score=87.76  Aligned_cols=93  Identities=19%  Similarity=0.236  Sum_probs=88.6

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       347 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ++|+++++.+|++..+.+.+|.++.+.|++++|+..+++++..+|.++.+++.+|.++..+|++++|..+++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHh
Q 013459          427 NKRASLSADRLRK  439 (442)
Q Consensus       427 ~~~~~~~l~~~~~  439 (442)
                      +...+..++.+..
T Consensus        84 ~~~~~~~la~~~~   96 (135)
T TIGR02552        84 DPRPYFHAAECLL   96 (135)
T ss_pred             ChHHHHHHHHHHH
Confidence            9999988887764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=99.11  E-value=2.8e-09  Score=96.84  Aligned_cols=120  Identities=18%  Similarity=0.124  Sum_probs=107.7

Q ss_pred             ccchHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      ..+|.+.++|+.++.++.+.++.  ++++.+++++++.+|++..+|..++.++...++++++++++.++++.+|.|..+|
T Consensus       100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW  179 (320)
T PLN02789        100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW  179 (320)
T ss_pred             HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence            34578888999999999888874  7889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          398 LRRGTAREML---GYY----KEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       398 ~~~a~~~~~~---~~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +.++.++.++   +++    ++++++..++++++|+|..+|.++..+..
T Consensus       180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~  228 (320)
T PLN02789        180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK  228 (320)
T ss_pred             HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence            9999998776   333    57888899999999999999998887754

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=8.2e-10  Score=95.05  Aligned_cols=89  Identities=20%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.++-.|.++|..|.+.|+|+.|++..+.++.++|.+..+|..+|.+|..+|++++|+..|+++|+++|+|...+-+|..
T Consensus       112 P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  112 PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHcCCHH
Q 013459          403 AREMLGYYK  411 (442)
Q Consensus       403 ~~~~~~~~~  411 (442)
                      +-.++++-.
T Consensus       192 Ae~~l~e~~  200 (304)
T KOG0553|consen  192 AEQKLNEPK  200 (304)
T ss_pred             HHHHhcCCC
Confidence            887777655

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.10  E-value=1.9e-09  Score=111.03  Aligned_cols=115  Identities=13%  Similarity=0.156  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +..+..+..+|..+.+.|++++|+.+|+++++++|++..++..++.++...|++++|+..++++++.+|++.. ++.+|.
T Consensus        46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~  124 (765)
T PRK10049         46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY  124 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            5667789999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++...|++++|+..++++++++|++..++..++.+.
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l  160 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL  160 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999988777654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.09  E-value=3.7e-09  Score=81.96  Aligned_cols=111  Identities=19%  Similarity=0.162  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAYL  398 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~  398 (442)
                      .+..++..|...++.|+|++|++.|+.+....|..   ..+...++.+|++.+++++|+..+++.++++|.++   -++|
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45789999999999999999999999999988764   57889999999999999999999999999999874   5889


Q ss_pred             HHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          399 RRGTAREMLGY---------------YKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       399 ~~a~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      ..|.+++++.+               ..+|...|++.++..|++.-+.....
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~  140 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK  140 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            99999998876               78999999999999999987765543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.09  E-value=1.6e-09  Score=116.73  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=106.0

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT--------------YYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      ..|.+..++..+|.++++.|++++|+.+|+++++.+|++..              ....+|.++.+.|++++|+..|+++
T Consensus       298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34777899999999999999999999999999999998643              1234588899999999999999999


Q ss_pred             HhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       387 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++++|++..+++.+|.++...|++++|+++|+++++++|++..++..+..+.
T Consensus       378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998887776653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=8.6e-10  Score=91.32  Aligned_cols=115  Identities=32%  Similarity=0.378  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      ..+..+...|+.++...+|.+|+.+|.++|.++|..+..|.+++.||+++++|+.+...+++++++.|+...++|.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHH
Q 013459          404 REMLGYYKEAIEDFSYALVLEP-----TNKRASLSADRLR  438 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~  438 (442)
                      +.+...|++|+..++++..+..     ...++...|..++
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999976532     2234555555544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.08  E-value=2.3e-09  Score=90.62  Aligned_cols=117  Identities=16%  Similarity=0.184  Sum_probs=109.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .+|++..+ ...+..++..|+-+++.....++...+|.+......+|..++..|+|.+|+..++++..++|++.++|..+
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            34666667 88999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      |.+|.+.|++++|...|.+++++.|+++.+..+++...
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~  178 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL  178 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence            99999999999999999999999999999999888664

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.08  E-value=1.3e-09  Score=104.39  Aligned_cols=108  Identities=29%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhcCCccHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~l~~~p~~~~~~~~  399 (442)
                      .+..+..|+..|..+..+|++.||.+.|..++.++|++......+|.++.+.|+..-|..  .+..+++++|.|+++||+
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence            377888999999999999999999999999999999999999999999999999888888  999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      +|.++.++|+.++|.++|+.++++++.+|-
T Consensus       760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  760 LGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999998874

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.07  E-value=4.2e-09  Score=96.39  Aligned_cols=123  Identities=18%  Similarity=0.078  Sum_probs=98.8

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      ...+.|+++-.+-..+..++..++..+|.+.+++++.++|+......++|+.+++.|++++|+..+.+.+..+|+++..|
T Consensus       332 L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w  411 (484)
T COG4783         332 LIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW  411 (484)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHH
Confidence            34555777777777888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ..++++|..+|+..+|...+-+.+.+..+-..+...+.+.++.
T Consensus       412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            8888888888888888877777777777776766666666544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=4.4e-09  Score=96.27  Aligned_cols=118  Identities=19%  Similarity=0.119  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +.....+|-.|..++..+++++|...++..+...|+|+..+...+.++++.++.++|++.+++++.++|+..-.++++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            46677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +|.+.|++++|++.++..+..+|+++..|..+++....
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999987643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.06  E-value=2.1e-09  Score=84.80  Aligned_cols=88  Identities=15%  Similarity=0.076  Sum_probs=82.3

Q ss_pred             HHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          352 AIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       352 al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      ...+. ++..+..+.+|..+++.|++++|++.|+-+..++|.+...|+++|.|+..+|+|++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            44566 77788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 013459          431 SLSADRLRK  439 (442)
Q Consensus       431 ~~~l~~~~~  439 (442)
                      ..+++.+.-
T Consensus       106 ~~~ag~c~L  114 (157)
T PRK15363        106 PWAAAECYL  114 (157)
T ss_pred             HHHHHHHHH
Confidence            999998863

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.05  E-value=6e-09  Score=101.65  Aligned_cols=108  Identities=21%  Similarity=0.197  Sum_probs=95.6

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      -+...|....+|+.+|.+|-++|+.+.+....-.|-.++|.+.+.|..++....++|++++|.-+|.++++.+|.+.+..
T Consensus       165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~  244 (895)
T KOG2076|consen  165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI  244 (895)
T ss_pred             HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence            35566888888999999999999999999888888888998889999999989899999999999999999999998888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      +..+.+|.++|++..|...|++++.+.|
T Consensus       245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  245 YERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            8899999999999999999999999888

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.04  E-value=7.7e-09  Score=90.26  Aligned_cols=114  Identities=19%  Similarity=0.225  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..+......++..|++..|++..++.+++.|.+...+..++.||...|+...||.+++.+-++..++.+.+|.++.+++.
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT  235 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence            34556677788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      .|+.+.++...++|++++|+.....-....++++
T Consensus       236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence            9999999999999999999999988877777765

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=7.7e-09  Score=86.67  Aligned_cols=151  Identities=17%  Similarity=0.094  Sum_probs=120.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013459          287 GGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR  366 (442)
Q Consensus       287 ~~d~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  366 (442)
                      ....++..+-..+.++......+.....  ..+.++|.+...+...-.....+|+--+|++.+.+.++.++.|.++|..+
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~--~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL  160 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYE--SLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL  160 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHH--HHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4455666666666666666666665554  23444577777777777777888888899999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          367 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       367 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +.+|+..|+|++|.-+++.++-+.|.++-.+..+|.+++-+|   +++.|.++|.++++++|.+-.++..+-.+..
T Consensus       161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988777   4677999999999999987777776655543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=2.6e-08  Score=83.59  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.+.......|..+-..|+|++|+++|+..++-+|.+...+-..-.+...+|+..+|++.+...++..+.+.++|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            66677788889999999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|...|+|++|.-++++++-+.|-++.....++.++.
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999888887753

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.01  E-value=1.7e-09  Score=74.83  Aligned_cols=65  Identities=22%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       337 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      ++.|+|++|+..|+++++.+|++..+++.++.||++.|++++|...+++++..+|+++..+..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            45566666666666666666666666666666666666666666666666666666655555444

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.01  E-value=6.8e-09  Score=111.88  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=99.4

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--------------------------------
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--------------------------------  369 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~--------------------------------  369 (442)
                      .|.+..+++.+|.++...|++++|++.|+++++++|++..++..++.+                                
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~  460 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ  460 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            466777888999999999999999999999999999987766555443                                


Q ss_pred             ----------HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          370 ----------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       370 ----------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                                +...|++++|++.|+++++++|+++.+++.+|.+|.++|++++|++.++++++.+|+++.++..++.
T Consensus       461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al  537 (1157)
T PRK11447        461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL  537 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence                      4467899999999999999999999999999999999999999999999999999999887655443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.99  E-value=2.7e-09  Score=74.94  Aligned_cols=69  Identities=29%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       368 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      .+|.+.++|++|++++++++.++|+++..|+.+|.++..+|++++|.+.|+++++..|+++.+....+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            455666666666666666666666666666666666666666666666666666666666665554443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.98  E-value=1.3e-08  Score=104.93  Aligned_cols=113  Identities=14%  Similarity=-0.032  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....+..++..+...|++++|++.+++++...|++..++..+|.++...|++++|++.+++++.++|++...++.+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      ..++++++|++.++++++.+|+++.+...-...
T Consensus       438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999877655443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=1.5e-09  Score=93.99  Aligned_cols=117  Identities=13%  Similarity=0.134  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-cHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KK-NVKAYLR  399 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~  399 (442)
                      +.+.++.-.+|..|+-.++.+-|+.+|.++++..-.+++.+.++|.|.+.-++++-++..|++++...  |+ -.+.||+
T Consensus       321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN  400 (478)
T KOG1129|consen  321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN  400 (478)
T ss_pred             CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence            55666777788889999999999999999999999999999999999999999999999999999764  33 3679999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|.+....|++..|.++|+-++..++++.+++.+++.++.
T Consensus       401 lg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~  440 (478)
T KOG1129|consen  401 LGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA  440 (478)
T ss_pred             cceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence            9999999999999999999999999999999999988763

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.97  E-value=4.4e-08  Score=93.40  Aligned_cols=110  Identities=12%  Similarity=-0.020  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      |.....++.+|..+.+.|++++|++.|+++++.+|++ ..++..++.+|.+.|++++|+..++++++.+|+... +..++
T Consensus       211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la  289 (389)
T PRK11788        211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALA  289 (389)
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHH
Confidence            3344555566666666666666666666666655544 234555566666666666666666666666655433 25566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      .++.+.|++++|.+.++++++.+|++......
T Consensus       290 ~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l  321 (389)
T PRK11788        290 QLLEEQEGPEAAQALLREQLRRHPSLRGFHRL  321 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            66666666666666666666666665544433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.97  E-value=2e-09  Score=74.40  Aligned_cols=68  Identities=24%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      +++.|++++|+..|++++..+|++.++++.++.+|.+.|++++|.+.+++++..+|+++..+..++++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            36789999999999999999999999999999999999999999999999999999998888777654

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.97  E-value=1.1e-09  Score=100.23  Aligned_cols=116  Identities=41%  Similarity=0.544  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      +..+...++..+..++|+.|+..|.++|+++|++...+.+++.++.+.++|..|+.++.++++++|....+|+..|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          406 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      .++++.+|...|++...+.|+++.+...+.+|++++
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.97  E-value=9.8e-09  Score=108.67  Aligned_cols=117  Identities=20%  Similarity=0.121  Sum_probs=102.9

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|.+...++.+|..+.+.|++++|+..|+++++.+|++..++..++.++...|+ .+|+..+++++.+.|+++..+..+
T Consensus       765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~  843 (899)
T TIGR02917       765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL  843 (899)
T ss_pred             hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence            3466677888889999999999999999999999999998889999999999988 789999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      |.++...|++++|.++|+++++++|.++.+...+..+.
T Consensus       844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  881 (899)
T TIGR02917       844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL  881 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            99999999999999999999999999888887777664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=4.9e-09  Score=97.65  Aligned_cols=76  Identities=22%  Similarity=0.211  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      ++++..||.+|.-.++|++|+.+|+.||..+|++...|..||-.+..-.+.++|+..|++|+++.|+..+++.+++
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg  505 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG  505 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence            3444455555555555666666666666666665556666665555555566666666666666655555444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.95  E-value=1.7e-08  Score=99.31  Aligned_cols=121  Identities=18%  Similarity=0.177  Sum_probs=111.1

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      ....+..++.+|++|+.+..+|+|++|..+|.++++.++++ .-.++.+|+.|++.|+++.++.+|+++++..|++.+.+
T Consensus       300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm  379 (1018)
T KOG2002|consen  300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM  379 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence            34556778889999999999999999999999999999988 67888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          398 LRRGTAREMLG----YYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       398 ~~~a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ..+|.+|...+    ..+.|..++.++++..|.+.++|..++.+..
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE  425 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            99999998775    5688999999999999999999999988864

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.94  E-value=3.6e-08  Score=104.38  Aligned_cols=110  Identities=24%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .....+..+|..++..|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|.+..+++.+|.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  202 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL  202 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            33444444444444444444454444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      +...|++++|.+.|+++++.+|++...+..
T Consensus       203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  232 (899)
T TIGR02917       203 LLSLGNIELALAAYRKAIALRPNNPAVLLA  232 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            444444444444444444444444444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=8.6e-09  Score=95.67  Aligned_cols=118  Identities=22%  Similarity=0.270  Sum_probs=104.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC----CCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      -.|.++-.+.++|.+.++.+.|.+|..+|+.++..-    ++.   ...+.++|.++.+++.+++|+..|++++.+.|.+
T Consensus       409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            347888899999999999999999999999999432    221   2458899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ..++-.+|.+|..+|+++.|+.+|.+++.++|+|.-+...++.+.
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999987777766553

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.93  E-value=2.9e-08  Score=94.67  Aligned_cols=116  Identities=22%  Similarity=0.221  Sum_probs=100.6

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      .+.....+..++..+.+.|++++|++.++++++..|.+.     ..+..+|.++.+.|++++|++.|+++++.+|++..+
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  216 (389)
T PRK11788        137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA  216 (389)
T ss_pred             CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence            456677899999999999999999999999999887653     356678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRL  437 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~  437 (442)
                      ++.+|.++.+.|++++|.+.|+++++.+|++. ..+..+..+
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~  258 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC  258 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence            99999999999999999999999999988763 344444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.92  E-value=3.6e-08  Score=75.38  Aligned_cols=96  Identities=21%  Similarity=0.038  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRR  400 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~  400 (442)
                      .++++.|..+-..|+.++|+.+|+++++...+.   ..++..+|.++..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            468999999999999999999999999976544   568899999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 013459          401 GTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                      +.++...|++++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988775

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.92  E-value=7.1e-09  Score=72.80  Aligned_cols=70  Identities=17%  Similarity=0.307  Sum_probs=64.9

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       333 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ...++++++|++|++.+++++.++|+++..+..+|.++.++|++++|+.+|+++++..|++..+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999999999887665543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.91  E-value=4.7e-08  Score=83.60  Aligned_cols=113  Identities=22%  Similarity=0.205  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY  397 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~  397 (442)
                      ..+..++..|..+++.|+|.+|+..|++++...|..   ..+.+.+|.++++.+++.+|+..+++.++..|.+   ..++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            356789999999999999999999999999998875   5789999999999999999999999999999876   4689


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          398 LRRGTAREMLG-----------YYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       398 ~~~a~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      |.+|.++.++.           ...+|...|+..++..|++.-+......
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~  132 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR  132 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence            99999976653           2458999999999999999866544433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3e-08  Score=89.23  Aligned_cols=101  Identities=20%  Similarity=0.193  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....+.+++.++.+.++|.+|+...+++|.++|+|..++|++|.++..+++|+.|+.+|+++++++|+|..+...+..+.
T Consensus       256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK  335 (397)
T ss_pred             HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHH-HHHHHHHHHhhCC
Q 013459          405 EMLGYYKE-AIEDFSYALVLEP  425 (442)
Q Consensus       405 ~~~~~~~~-A~~~~~~~l~~~p  425 (442)
                      .+..++.+ ..+.|.+++...+
T Consensus       336 ~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc
Confidence            87777655 4778888887655

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.90  E-value=6.6e-08  Score=84.71  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY  397 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~  397 (442)
                      ..+..++..|..+++.|+|++|++.|++++...|....+   .+.+|.+|++.+++++|+..+++.++++|++   ..++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            356678999999999999999999999999999988654   4889999999999999999999999999877   5688


Q ss_pred             HHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          398 LRRGTAREMLG---------------Y---YKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       398 ~~~a~~~~~~~---------------~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      |.+|.++..++               +   ..+|++.|++.++..|++.-+.....++
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl  167 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL  167 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence            99998875554               1   2568899999999999987655444433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.5e-08  Score=88.09  Aligned_cols=108  Identities=34%  Similarity=0.507  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      .+.+..+...|+.|++..+|..|+..|.+.|+..-.+    ...|.+++.|.+.+|+|..|+.++.+++.++|.+..+++
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~  157 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI  157 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence            3477889999999999999999999999999875443    568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      .-+.|+.++.++.+|...++..++++-+...+
T Consensus       158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            99999999999999998888877766544433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.3e-07  Score=82.26  Aligned_cols=114  Identities=11%  Similarity=0.037  Sum_probs=104.2

Q ss_pred             ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-H
Q 013459          316 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-V  394 (442)
Q Consensus       316 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~  394 (442)
                      .......-+.++.+.++|..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|++|++.++++++.||+. +
T Consensus       170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~  249 (389)
T COG2956         170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS  249 (389)
T ss_pred             cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence            344555567889999999999999999999999999999999999999999999999999999999999999999987 6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      ++.-.+-.||.++|+.++.+..+.++.+..++...
T Consensus       250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            78888999999999999999999999998876543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.89  E-value=2.1e-08  Score=92.33  Aligned_cols=72  Identities=19%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      ...+|..+..++++|..|++.|+|++|+..|+++++++|++..+   |+++|.+|.++|++++|+.++++++++.
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45668999999999999999999999999999999999999854   9999999999999999999999999984

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.88  E-value=3.2e-08  Score=79.15  Aligned_cols=98  Identities=22%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC--
Q 013459          342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS----------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY--  409 (442)
Q Consensus       342 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--  409 (442)
                      |+.|.+.++.....+|.+.+.+++-|.++..+.+          +++|+.-|+.++.++|+.+++++++|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6788888999999999999988888877766643          6778888999999999999999999999987774  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          410 ---------YKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       410 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                               |++|..+|+++...+|+|...+..+....+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence                     788999999999999999998888876653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.88  E-value=1.5e-08  Score=94.29  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|.....++.+|.++++.|+|++|+..++++++++|++..+++++|.+++++|+|++|+..|+++++++|++..+...+
T Consensus        31 ~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         31 LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 013459          401 GTAREMLG  408 (442)
Q Consensus       401 a~~~~~~~  408 (442)
                      +.|...+.
T Consensus       111 ~~~~~kl~  118 (356)
T PLN03088        111 KECDEKIA  118 (356)
T ss_pred             HHHHHHHH
Confidence            88876663

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.85  E-value=7.8e-08  Score=77.58  Aligned_cols=98  Identities=19%  Similarity=0.111  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      +-...+.+.+|..++..|+|++|+..|++++...|+.   ..+...++.+++..|++++|+..++.. .-.+..+.++..
T Consensus        45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~  123 (145)
T PF09976_consen   45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAEL  123 (145)
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHH
Confidence            4456788899999999999999999999999987665   457888999999999999999999773 334455778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 013459          400 RGTAREMLGYYKEAIEDFSYAL  421 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l  421 (442)
                      +|.+|...|++++|++.|++++
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999874

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.85  E-value=1.5e-07  Score=70.55  Aligned_cols=101  Identities=26%  Similarity=0.271  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRGT  402 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~  402 (442)
                      ..+-..|..+...|+.++|++.|.+++.+-|+.+.+|+++++.+.-.|+.++|+.++.+++++.-..    ..++...|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            3455668888899999999999999999999999999999999999999999999999999997544    457888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      +|..+|+-+.|...|+.+-++....
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCHH
Confidence            9999999999999999988876543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.85  E-value=8.9e-09  Score=93.31  Aligned_cols=105  Identities=20%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      +...|.+......++..+...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+|+++++.+|+++..+.
T Consensus       173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~  252 (280)
T PF13429_consen  173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL  252 (280)
T ss_dssp             HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccc
Confidence            34458888899999999999999999999999998888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      .+|.++...|++++|.+.++++++.
T Consensus       253 ~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  253 AYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            9999999999999999999988754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.82  E-value=2.2e-08  Score=92.24  Aligned_cols=69  Identities=19%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA---YLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       355 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      .+|+++.+++++|.+|+++|+|++|+..|+++++++|++.++   |+++|.+|..+|++++|++++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999865   999999999999999999999999997

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=5.3e-08  Score=81.16  Aligned_cols=107  Identities=24%  Similarity=0.350  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGN----------NATYYSNRAAAYLESGSFLQAEADCTK  385 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~  385 (442)
                      ....++.+.|+.+|+.|+|.||...|..|+..        .|.          ....+.+.++|++..++|-++++++..
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            45567899999999999999999999998753        333          345678999999999999999999999


Q ss_pred             HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      .+..+|.|..++|..|.+....=+.++|...|+++++++|.-...
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999999999975543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.80  E-value=9.1e-08  Score=97.48  Aligned_cols=111  Identities=13%  Similarity=-0.045  Sum_probs=76.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ...|........+...+...|++++|+.++++++...|.....+..+|.++..+|+|++|++.|+++++.+|+++++++.
T Consensus        62 ~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~g  141 (822)
T PRK14574         62 KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISG  141 (822)
T ss_pred             hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            33344432233666777777777777777777773333334444444667777788888888888888888877777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      ++.++.+.++.++|++.++++...+|++...
T Consensus       142 La~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        142 MIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            7777777788888888888877777775554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.80  E-value=2e-07  Score=91.30  Aligned_cols=116  Identities=20%  Similarity=0.182  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      ...+.+...|+.++..|++++|++.+.++|+.+|.++.+|+.+|.+|.++|+.+++...+-.|-.++|.+.+.|..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ..++|++++|.-+|.++++.+|.+.........+.+
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            999999999999999999999999887766666654

>PRK11906 transcriptional regulator; Provisional

Probab=98.76  E-value=2.1e-07  Score=85.99  Aligned_cols=110  Identities=14%  Similarity=-0.048  Sum_probs=100.1

Q ss_pred             ccchHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          320 FNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      .-+|..+.++..+|.+++..         .+-.+|.++.+++++++|.|+.++..+|.++...++++.|+..|++++.++
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~  368 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS  368 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence            44577888888888888764         356789999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      |+...+|+..|.+....|+.++|.+.++++++++|....
T Consensus       369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            999999999999999999999999999999999996543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.75  E-value=5.4e-08  Score=93.17  Aligned_cols=109  Identities=16%  Similarity=0.073  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      +.+.+.+|...+++++|+++.++++..++++|-....|+.+|.|..++++++.|.++|.+++.++|++.++|.+++.+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            33445555556778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          406 MLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      ..++..+|...++++++.+-++...|.+.
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENy  593 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIWENY  593 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence            99999999999999999987776666554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=5.5e-08  Score=88.01  Aligned_cols=116  Identities=22%  Similarity=0.152  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      -++.++.+.|+..+.+|+++.|.+.|.+++..+.....++++.|..+..+|+.++|+.+|-++-.+--++.+.++.++.+
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani  567 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI  567 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35566777888889999999999999999999998999999999999999999999999998877777889999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |..+.+..+|++.+.++..+-|+++.+...++.+..
T Consensus       568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999988764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.73  E-value=1.3e-07  Score=88.91  Aligned_cols=105  Identities=12%  Similarity=-0.016  Sum_probs=94.7

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----KA  396 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~  396 (442)
                      ..|.....+..+|..+..+|++++|+..++++++++|++..++..+|.++...|++++|+.++++++...|.++    ..
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            34667778888999999999999999999999999999999999999999999999999999999999876432    35


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      ++.++.++...|++++|...|++++...|
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            66899999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.71  E-value=1.4e-07  Score=89.16  Aligned_cols=112  Identities=17%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..++..+.-.+..++|...++..+.+++.+|++.+.....|..+..+|+-++|....+.+++.++.++-.|+-+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            34555555555666666666666666666666666555566666666666666666666666666556666666666666


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ..+|++|+++|+.|+.++|+|..++.-+.-+.
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ  119 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ  119 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            66666666666666666666665555555443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.70  E-value=1.9e-07  Score=94.26  Aligned_cols=117  Identities=9%  Similarity=-0.061  Sum_probs=91.5

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH------
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------  394 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------  394 (442)
                      -.|.+..++..+...+...+++++|++..+.+++.+|+...+|+.+|.++++.+++.++...  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            34777888888888888888888888888888888888888888888888888776666555  5555444444      


Q ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          395 -------------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       395 -------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                                   .+++.+|.||.++|++++|.+.|+++++++|+|+.+.++++....
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a  161 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE  161 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence                         788888888888888888888888888888888888877776543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=9e-08  Score=89.08  Aligned_cols=119  Identities=16%  Similarity=0.027  Sum_probs=111.9

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ....|+.+-.|+..|..|+..+++.+|.++|.|+-.++|....+|..+|..+.-.+..++|+..|..|-++-|..+...+
T Consensus       305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L  384 (611)
T KOG1173|consen  305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL  384 (611)
T ss_pred             HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH
Confidence            34458899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      .+|.-|..+++++.|.+.|.+++.+.|.++-....++.+
T Consensus       385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv  423 (611)
T KOG1173|consen  385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV  423 (611)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence            999999999999999999999999999999888777654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.70  E-value=2e-07  Score=77.41  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=89.0

Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHcCC
Q 013459          335 QAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGY  409 (442)
Q Consensus       335 ~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~  409 (442)
                      -++-..+|..+...+.+.++.++.+  ...++.+|.++..+|++++|+..|++++.+.|+.   ..+++++|.++...|+
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~   87 (168)
T CHL00033          8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE   87 (168)
T ss_pred             ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence            3455566778888887776666655  5677999999999999999999999999887653   4589999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          410 YKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       410 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +++|+++++++++++|.+...+..++.+..
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            999999999999999999998888777664

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.70  E-value=3.2e-07  Score=93.54  Aligned_cols=115  Identities=14%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +.....+..+|..+...|+|++|++.|+++++.+|+++.++..++..+.+.++.++|++.++++...+|.+... ..++.
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay  177 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY  177 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence            34455666668899999999999999999999999999999999999999999999999999999999986554 44566


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++...+++.+|++.++++++.+|++.++...+-.+.
T Consensus       178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l  213 (822)
T PRK14574        178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEIL  213 (822)
T ss_pred             HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            666677887799999999999999999876665544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.6e-07  Score=92.71  Aligned_cols=120  Identities=19%  Similarity=0.166  Sum_probs=108.9

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VK  395 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~  395 (442)
                      ..++.++.++..+++.++-.++|+.+..++..++...-..   ++.+|.+|.+|..+|+|++|.++|.++++.++++ .-
T Consensus       264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l  343 (1018)
T KOG2002|consen  264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL  343 (1018)
T ss_pred             hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence            3446788999999999999999999999999999876433   4669999999999999999999999999999998 67


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++.+|+.|...|+++.|..+|++.++..|++.+....++.+..
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            88999999999999999999999999999999999888887753

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=1.3e-06  Score=76.16  Aligned_cols=101  Identities=12%  Similarity=0.053  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      .-.++|.||++.|.+.+|.+.++.+++..| .++.+..++.+|....+++.|+..+...+...|.+...+...+.++..+
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence            344789999999999999999999998876 5677888999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCChH
Q 013459          408 GYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       408 ~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      +++++|.++|+.+++++|.|-+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccce
Confidence            9999999999999999886544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=9.8e-07  Score=80.14  Aligned_cols=135  Identities=13%  Similarity=0.026  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 013459          301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE  380 (442)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~  380 (442)
                      +.+++...+..+..+....  -|.++..+..+|..|-+.|+-.+|.+++.......|-+.+....++..|....-+++|+
T Consensus       569 e~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai  646 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAI  646 (840)
T ss_pred             HHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHH
Confidence            3344444444444333222  26667777888888888888888888888888888888888888888888888899999


Q ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       381 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      .+|+++..+.|+...-....+.|+.+.|+|++|...|+...+..|++-+....+-++
T Consensus       647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            999999988898777667779999999999999999999999999988877666554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.64  E-value=3.5e-07  Score=84.89  Aligned_cols=97  Identities=19%  Similarity=0.197  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      +....++..++..++..+|++.++++++.+|.+...+...+..+++.++++.|++..+++.++.|.+.+.|+.|+.+|..
T Consensus       201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            35566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q 013459          407 LGYYKEAIEDFSYALVL  423 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~  423 (442)
                      +|++++|+..++.+--.
T Consensus       281 ~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  281 LGDFENALLALNSCPML  297 (395)
T ss_pred             cCCHHHHHHHHhcCcCC
Confidence            99999999888765444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=2.9e-07  Score=75.53  Aligned_cols=108  Identities=19%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      +.+.+..++++|..|-..|-+.-|.-.|.+++.+.|+.+.+++.+|..+...|+|+.|...|...++++|.+.-++.+.|
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      ..++--|+|+-|.+.+.+-.+-+|+++-
T Consensus       141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         141 IALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            9999999999999999999999999884

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.62  E-value=1.1e-07  Score=67.72  Aligned_cols=63  Identities=29%  Similarity=0.385  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      .++.++|.+|..+|+|++|+.+|++++.+.       |....+++++|.++..+|++++|++++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            334444444444444444444444444321       111234445555555555555555555555443

...

>TIGR00540 hemY_coli hemY protein

Probab=98.62  E-value=5.8e-07  Score=85.96  Aligned_cols=114  Identities=11%  Similarity=-0.022  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY--SNRAAAYLESGSFLQAEADCTKAINLDKKNV--KAYLR  399 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~  399 (442)
                      .+...+...+..+...|++++|++.++++++..|++....  ..+.......++.+.+++.++++++.+|+++  ..+..
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            5778899999999999999999999999999999987532  2233344456889999999999999999999  88889


Q ss_pred             HHHHHHHcCCHHHHHHHHH--HHHhhCCCChHHHHHHHHHH
Q 013459          400 RGTAREMLGYYKEAIEDFS--YALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~--~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +|.++.+.|++++|.++|+  ++++..|++.... .++.+.
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll  380 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAF  380 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHH
Confidence            9999999999999999999  6888889877644 655554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.61  E-value=8.5e-07  Score=86.16  Aligned_cols=70  Identities=26%  Similarity=0.270  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      ++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            334444555555667788888888888888888 5778888888888888888888888888888888764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.61  E-value=6.8e-07  Score=86.29  Aligned_cols=115  Identities=22%  Similarity=0.097  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      ...|...+..+.+.++-++|-.++.++-.++|.....|+.+|.++...|++++|.+.|.-++.++|+++.....+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            45677788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHH--HHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          406 MLGYYKEAIE--DFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       406 ~~~~~~~A~~--~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +.|+..-|.+  .+..+++++|.|+++|.+++.+.+.
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK  766 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            9999888887  9999999999999999999998764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.2e-07  Score=82.35  Aligned_cols=117  Identities=26%  Similarity=0.328  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------------TYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      +.+..+++.+|.+++-..+.+.|+.+|++++.++|++.            ..+...|.-.++.|+|..|.+.|..+|.++
T Consensus       200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            56788999999999999999999999999999999863            346678888999999999999999999999


Q ss_pred             Ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          391 KKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       391 p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |++    ...|++++.+...+|+.++|+..++.++++++.--.++...+.|.-
T Consensus       280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            987    4568889999999999999999999999999988777776666653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.59  E-value=8.7e-07  Score=84.64  Aligned_cols=107  Identities=20%  Similarity=0.178  Sum_probs=93.3

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ....+|..+..+.++|..|.+.|+|++|..++++++++..        +-...+.+++.++..++++++|+.++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999998742        23567888999999999999999999999876


Q ss_pred             C-----Cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          390 D-----KK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       390 ~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      .     ++   -...+-++|.+|..+|+|++|.+.++++++..
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            3     22   35688899999999999999999999999875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.59  E-value=8.5e-08  Score=68.23  Aligned_cols=69  Identities=17%  Similarity=0.303  Sum_probs=59.4

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---G----NNATYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      .|..+..+..+|.++...|+|++|+.+|++++++.   +    ....++.++|.++..+|++++|++++++++++.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            36778899999999999999999999999999762   1    225688999999999999999999999999863

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.59  E-value=3e-06  Score=72.50  Aligned_cols=120  Identities=22%  Similarity=0.139  Sum_probs=94.4

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhc-----------CHHHHHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCT  384 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~-----------~~~~A~~~~~  384 (442)
                      -...+...++.+.+|..+++.++|++|+..|++.++..|+++   .+++.+|.+++.+.           ...+|+..|+
T Consensus        35 ~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~  114 (203)
T PF13525_consen   35 YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE  114 (203)
T ss_dssp             -TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence            334466778899999999999999999999999999999874   68889999887653           3468999999


Q ss_pred             HHHhcCCccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          385 KAINLDKKNVK-----------------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       385 ~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ..++..|++..                 --+..|..|.+.|.|..|+..++.+++..|+.......+..+.
T Consensus       115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~  185 (203)
T PF13525_consen  115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLA  185 (203)
T ss_dssp             HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            99999997622                 2344688899999999999999999999999988766555443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.1e-06  Score=76.64  Aligned_cols=97  Identities=21%  Similarity=0.103  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 013459          342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY---YKEAIEDFS  418 (442)
Q Consensus       342 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~  418 (442)
                      .++.+.-++.-+..+|+|..-|..+|.+|+.+|++..|...|++++++.|+|++.+..+|.+++...+   -.++.+.|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            34455667778899999999999999999999999999999999999999999999999998765443   468999999


Q ss_pred             HHHhhCCCChHHHHHHHHHH
Q 013459          419 YALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       419 ~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +++.++|+|..+...++.-.
T Consensus       218 ~al~~D~~~iral~lLA~~a  237 (287)
T COG4235         218 QALALDPANIRALSLLAFAA  237 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHH
Confidence            99999999999988887643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.58  E-value=2.7e-06  Score=68.28  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRG  401 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a  401 (442)
                      ..+-.+.+|+.+...|+|.||..+|++++. +.-+++..+..+++..+..+++.+|...++++.+.+|..  +..+..+|
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a  167 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA  167 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence            345677899999999999999999999986 567888999999999999999999999999999999864  67888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      ..|..+|++++|...|+.++...|+-.
T Consensus       168 R~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         168 RTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            999999999999999999999998754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=3.9e-06  Score=73.27  Aligned_cols=116  Identities=24%  Similarity=0.255  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      .....++..+-..|.+..+|++|++..++..++.++.     ...|..++..+....+.+.|+..+.++++-+|.+..+-
T Consensus       138 efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs  217 (389)
T COG2956         138 EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS  217 (389)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh
Confidence            3455678889999999999999999999999998875     46788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHH
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRLR  438 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~  438 (442)
                      ..+|.++...|+|+.|++.++.+++.+|+.- ++...+..+.
T Consensus       218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y  259 (389)
T COG2956         218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY  259 (389)
T ss_pred             hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999753 3444444444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.3e-06  Score=78.59  Aligned_cols=117  Identities=18%  Similarity=0.042  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHH-HHH-HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          323 KQSAEIAKEKG-NQA-YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a-~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      +.+++.+..+| .++ ....--++|.+++++++.++|.+..+...++.++...|.++.+++.+++.+...|+. ..+..+
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~L  477 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHL  477 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHH
Confidence            34445555553 222 233445779999999999999999999999999999999999999999999988864 566779


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      |.++...+.+++|..+|.+++.++|++......+.++++.
T Consensus       478 gd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  478 GDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.53  E-value=8.3e-07  Score=73.92  Aligned_cols=81  Identities=19%  Similarity=0.216  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      ....+++.+|.++...|++++|+.+|++++...|+.   ..+++.+|.++..+|++++|+++++++++.+|++...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            456788999999999999999999999999887653   46899999999999999999999999999999999888777


Q ss_pred             HHHH
Q 013459          435 DRLR  438 (442)
Q Consensus       435 ~~~~  438 (442)
                      +.+.
T Consensus       113 g~~~  116 (172)
T PRK02603        113 AVIY  116 (172)
T ss_pred             HHHH
Confidence            7665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.52  E-value=1.1e-06  Score=64.59  Aligned_cols=77  Identities=32%  Similarity=0.414  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|.+.|++++...|.+...+..++.+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999987776666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.52  E-value=7.9e-07  Score=84.93  Aligned_cols=105  Identities=14%  Similarity=0.060  Sum_probs=92.2

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--  389 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--  389 (442)
                      ...|....+...++..|..+|+|+.|+..++++++.        .|.-......+|.+|..+++|.+|+..|++++.+  
T Consensus       193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            344778888888999999999999999999999998        5555666677999999999999999999999976  


Q ss_pred             ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          390 ------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       390 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                            +|....++.++|.+|.+.|+|++|..++++++++.
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence                  34556789999999999999999999999999874

>PRK11906 transcriptional regulator; Provisional

Probab=98.52  E-value=8.8e-06  Score=75.49  Aligned_cols=110  Identities=11%  Similarity=0.010  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhcc---cHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHhcCCc
Q 013459          328 IAKEKGNQAYKDK---QWLKAISFYTEAI---KLNGNNATYYSNRAAAYLESG---------SFLQAEADCTKAINLDKK  392 (442)
Q Consensus       328 ~~~~~a~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~~l~~~p~  392 (442)
                      .++.+|...+.++   ..+.|+.+|.+++   +++|++..+|..++.||+..-         +..+|....+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            3477777776554   5678999999999   999999999999999998761         466888999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      |+.+++.+|.++...++++.|...|++++.++|+.+.++...+.+
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.50  E-value=1.6e-06  Score=67.30  Aligned_cols=75  Identities=13%  Similarity=0.073  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      +.....++.+|.++++.++|++|+..|++++..+|++   ..+++.+|.++.+++++++|+..++++++..|++..+.
T Consensus        36 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        36 TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            3446788999999999999999999999999998875   67899999999999999999999999999999886643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.47  E-value=2.7e-06  Score=81.02  Aligned_cols=105  Identities=12%  Similarity=0.046  Sum_probs=82.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .+.++......+..+...|+.++|...++++++. +.++.....++.+  ..++++++++.+++.++.+|+++..++.+|
T Consensus       259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lg  335 (398)
T PRK10747        259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLG  335 (398)
T ss_pred             HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3556777888888888888888888888888884 4455544444443  348888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      .++...+++++|.++|+++++..|++..
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence            8888888888888888888888888765

>TIGR00540 hemY_coli hemY protein

Probab=98.47  E-value=7.2e-06  Score=78.45  Aligned_cols=107  Identities=12%  Similarity=0.051  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      |.....+...|..+.++|++++|..+++++.+..|++. .+...++.++.+.|++++|...+++.++.+|+++.++..++
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~  194 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE  194 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            33444566678888888888888888888888877764 45555688888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      .++.+.|++++|.+.+++..+....++.
T Consensus       195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~  222 (409)
T TIGR00540       195 EAYIRSGAWQALDDIIDNMAKAGLFDDE  222 (409)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            8888888888888888888877554444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.46  E-value=4.8e-07  Score=65.30  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      +...++.+|.++++.|+|++|+..+++ .+.++.+....+.+|.|++++|++++|++.|+++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            566788899999999999999999999 8888888899999999999999999999999875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.45  E-value=1.2e-05  Score=78.37  Aligned_cols=113  Identities=13%  Similarity=0.036  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhc--CC
Q 013459          325 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--------SFLQAEADCTKAINL--DK  391 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~--~p  391 (442)
                      .+-.++.+|..++...   ++.+|+.+|+++++++|++..++..++.+|....        +..++.+..++++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            4556777888887654   4889999999999999999999999998886653        345666667776664  67


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .++.++.-+|..+...|++++|..+++++++++| +..++..++++.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~  463 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVY  463 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            7788899999999999999999999999999999 477888887765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.44  E-value=4.1e-06  Score=78.78  Aligned_cols=103  Identities=18%  Similarity=0.128  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-------------------------------------HHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRAAA  369 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~~~~~  369 (442)
                      +..+..+..++..|++++|...++++++.+|++.                                     ..+..+|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            3444556666666666666666666666655544                                     333456678


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      +..+|++++|+..++++++++|++..++..+|.++.+.|++++|+.++++++...|.++.
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~  183 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM  183 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc
Confidence            888899999999999999999999989999999999999999999999999998875443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=5.6e-06  Score=74.58  Aligned_cols=120  Identities=16%  Similarity=0.167  Sum_probs=96.6

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---------------------------
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY---------------------------  370 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---------------------------  370 (442)
                      ....-+.+...+..+|.+++..|++.+|+..|+++..++|.+....-..|.++                           
T Consensus       224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w  303 (564)
T KOG1174|consen  224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW  303 (564)
T ss_pred             hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence            33444778889999999999999999999999999999988654443333333                           


Q ss_pred             -------HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          371 -------LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       371 -------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                             +..++++.|+.+-+++++.+|.+.+++...|.++.++++.++|+-.|+.+..+.|..-+.+..+-++
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS  377 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence                   4455788888888899999999999999999999999999999999999999988877766655443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.43  E-value=3.3e-06  Score=80.20  Aligned_cols=104  Identities=13%  Similarity=-0.002  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      +|+.-+....-+++.++|+++++++++.+|+....|..+|+++.++++.+.|...|...++.-|+.+..|..++.+-.+.
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            33333444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCHHHHHHHHHHHHhhCCCChHHH
Q 013459          408 GYYKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       408 ~~~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      |+.-.|...++++...+|++...|
T Consensus       733 ~~~~rAR~ildrarlkNPk~~~lw  756 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKNPKNALLW  756 (913)
T ss_pred             cchhhHHHHHHHHHhcCCCcchhH
Confidence            444444444444444444444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=5.1e-06  Score=73.33  Aligned_cols=131  Identities=15%  Similarity=0.078  Sum_probs=85.0

Q ss_pred             HHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------------hCC-----------
Q 013459          303 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--------------LNG-----------  357 (442)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~p-----------  357 (442)
                      +.++.++........+.++.  .++.+.++|.+++-.|+|.||.....++-+              ++.           
T Consensus        70 LgdY~~Al~~Y~~~~~~~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L  147 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKDDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL  147 (557)
T ss_pred             hccHHHHHHHHHHHhccCCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            44455555444433332222  234566667777777777776665444321              110           


Q ss_pred             -CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          358 -NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       358 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                       +..+-...++-+++..-.|++|+..|.+++.-+|+......+++.||+++.-|+-+.+.+...++..|++..+.+.+.
T Consensus       148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka  226 (557)
T KOG3785|consen  148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA  226 (557)
T ss_pred             hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence             011222344555555557888888898988888888888888999999999999999999999999999887765543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.42  E-value=1.6e-05  Score=64.08  Aligned_cols=114  Identities=22%  Similarity=0.078  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY  397 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~  397 (442)
                      ..+...+......+..+++..+...+++.++.+|+.   ..+.+.++.+++..|++++|+..|++++...|+.   ..+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            345556666777778999999999999999999988   5678889999999999999999999999987654   4588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +.++.++...|++++|+..++.. .-.+-.+.++..++.+.
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~  128 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIY  128 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHH
Confidence            88999999999999999999763 33334445555555543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.41  E-value=7e-06  Score=78.11  Aligned_cols=120  Identities=15%  Similarity=0.066  Sum_probs=108.1

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ..+|.+.+.|+..-...+.+.+|++|..+|.++-...|. ...|+-.+.....+++.++|++.++++++..|+.+..|+.
T Consensus       612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm  690 (913)
T KOG0495|consen  612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM  690 (913)
T ss_pred             HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence            344778888998889999999999999999999987764 4677888888899999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +|+++.++++.+.|...|...++..|.+...|..+.++...
T Consensus       691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.40  E-value=8.6e-06  Score=73.30  Aligned_cols=105  Identities=15%  Similarity=0.088  Sum_probs=86.7

Q ss_pred             HHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          330 KEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       330 ~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      ...+.+.+..|  ++++|...|++..+..+.++..++.++.|++++|+|++|.+.+++++..+|.+++++.++..+...+
T Consensus       169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~  248 (290)
T PF04733_consen  169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL  248 (290)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence            33344555544  7999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             CCH-HHHHHHHHHHHhhCCCChHHHHHH
Q 013459          408 GYY-KEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       408 ~~~-~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      |+- +.+.+++.++...+|+++......
T Consensus       249 gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  249 GKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             T-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            988 677789999999999988765544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.39  E-value=5.6e-06  Score=78.66  Aligned_cols=116  Identities=11%  Similarity=0.054  Sum_probs=94.0

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|+..+.+-..|..+...|+-++|..+...++..++.+...|.-+|.++...++|++|+++|+.|+.++|+|.+.|.-+
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            55677777778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      +....++++|+.....-.+.+++.|.....|..++.
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av  151 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV  151 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            888888888888888888888888877766655544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.39  E-value=3.2e-05  Score=67.88  Aligned_cols=116  Identities=15%  Similarity=0.043  Sum_probs=94.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhc---------------C---HHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG---------------S---FLQAE  380 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~---------------~---~~~A~  380 (442)
                      .+....+.+.+|..+++.++|++|+..+++.++.+|++   ..+++.+|.++..++               +   ..+|+
T Consensus        65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~  144 (243)
T PRK10866         65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF  144 (243)
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence            34555678899999999999999999999999999887   467899998875554               1   35788


Q ss_pred             HHHHHHHhcCCccH---HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          381 ADCTKAINLDKKNV---KA--------------YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       381 ~~~~~~l~~~p~~~---~~--------------~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      +.|++.++..|+..   ++              -+..|.-|.+.|.|..|+.-++.+++..|+.+.....+..+
T Consensus       145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l  218 (243)
T PRK10866        145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM  218 (243)
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            99999999999762   22              23467779999999999999999999999887766555444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.38  E-value=2.1e-06  Score=87.03  Aligned_cols=104  Identities=14%  Similarity=0.031  Sum_probs=86.5

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHHhcCHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------------------ATYYSNRAAAYLESGSFLQA  379 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~~~~~~~~~~~~~~A  379 (442)
                      ....|+....++..|..+++.+++.++...  .++...+.+                   ..+++.+|.||-++|++++|
T Consensus        58 l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka  135 (906)
T PRK14720         58 LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKL  135 (906)
T ss_pred             HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHH
Confidence            444577788888888888887777766555  555544444                   48999999999999999999


Q ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          380 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       380 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      ...|+++++++|+|+.++.++|..|... +.++|++++.+++...-
T Consensus       136 ~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        136 KGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988 99999999999887643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=2e-06  Score=82.69  Aligned_cols=107  Identities=15%  Similarity=0.120  Sum_probs=100.4

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ..-+|-....|+..|.++.+.++++.|.+.|.+++.++|++..+|++++..|.+.++-++|...+.++++.+-.+...|-
T Consensus       512 l~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE  591 (777)
T KOG1128|consen  512 LEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE  591 (777)
T ss_pred             hhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence            34447778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      |+-.+..+.|++++|++.+.+.+.+..
T Consensus       592 Nymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  592 NYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             chhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            999999999999999999999887643

>PRK15331 chaperone protein SicA; Provisional

Probab=98.33  E-value=3.4e-06  Score=67.13  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=79.8

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459          352 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       352 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      +..+.++..+..+..|.-+++.|++++|...|+-+..++|.+++.|+.+|.|+..+++|++|+..|..+..++++++...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            34455566778889999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHh
Q 013459          432 LSADRLRK  439 (442)
Q Consensus       432 ~~l~~~~~  439 (442)
                      ...+.|.-
T Consensus       109 f~agqC~l  116 (165)
T PRK15331        109 FFTGQCQL  116 (165)
T ss_pred             chHHHHHH
Confidence            88888763

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.31  E-value=3.3e-07  Score=80.44  Aligned_cols=99  Identities=32%  Similarity=0.451  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      -....+...+..|.+++|+++|..+|.++|.....|..++.++++++++..|+.+|..++.++|+....|-..+.+...+
T Consensus       116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            44455677788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC
Q 013459          408 GYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       408 ~~~~~A~~~~~~~l~~~p~  426 (442)
                      |++++|.+++..+.+++-+
T Consensus       196 g~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hchHHHHHHHHHHHhcccc
Confidence            9999999999999998754

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.31  E-value=1.7e-06  Score=53.50  Aligned_cols=40  Identities=30%  Similarity=0.273  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      +++.+|.+|..+|++++|++.|+++++.+|+|+.++..++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4444455555555555555555555555555555444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.30  E-value=1.7e-06  Score=53.57  Aligned_cols=42  Identities=24%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      .++..+|.+|..+|++++|++.|+++++.+|+++++|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666777777777777777777777777777777766654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=1.5e-05  Score=64.81  Aligned_cols=90  Identities=20%  Similarity=0.214  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ....-.|.++|.++++.+.++.|+....++|+++|.+..++.+++.+|.++..|++|+.+|.+.+..+|.+.++.-....
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            34556788999999999999999999999999999999999999999999999999999999999999998887766666


Q ss_pred             HHHHcCCHHH
Q 013459          403 AREMLGYYKE  412 (442)
Q Consensus       403 ~~~~~~~~~~  412 (442)
                      +--...+..+
T Consensus       211 l~~~i~ernE  220 (271)
T KOG4234|consen  211 LPPKINERNE  220 (271)
T ss_pred             cCHHHHHHHH
Confidence            5544444433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.29  E-value=3.5e-05  Score=65.86  Aligned_cols=113  Identities=18%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AY  397 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~  397 (442)
                      ..+..+++.|...++.|+|++|+..|+++...+|..   ..+...++.++++.+++++|+...++-+++.|.+++   ++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            456789999999999999999999999999988765   578889999999999999999999999999987754   67


Q ss_pred             HHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          398 LRRGTAREMLGY--------YKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       398 ~~~a~~~~~~~~--------~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      |..|.+++..=+        ..+|...|++.++..|++.-+.....+
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~  158 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR  158 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            778888754322        357889999999999998755444333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.29  E-value=2.2e-05  Score=73.17  Aligned_cols=103  Identities=13%  Similarity=0.009  Sum_probs=93.5

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013459          334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  413 (442)
Q Consensus       334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A  413 (442)
                      ..+...+++++|+..+++..+.+|+   +...++.++...++..+|++.+.++++.+|.+.+.+...+..+.+.++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3444567899999999999988875   5566899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          414 IEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       414 ~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++..+++.++.|++-..|..|+++.-
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            99999999999999999999998864

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.27  E-value=3.6e-05  Score=73.32  Aligned_cols=106  Identities=10%  Similarity=0.021  Sum_probs=90.6

Q ss_pred             HHHHHH-HHHHHhcccHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          327 EIAKEK-GNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       327 ~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ..++.+ +....+.|++++|..+|.++.+.+|++..+. ...+..+...|++++|++.++++.+.+|+++.++..++.+|
T Consensus       118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~  197 (398)
T PRK10747        118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY  197 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344444 6666999999999999999999999875433 34589999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASL  432 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~  432 (442)
                      ...|++++|.+.+.+..+..+.++....
T Consensus       198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        198 IRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             HHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999999988877655444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.25  E-value=1.6e-05  Score=71.56  Aligned_cols=116  Identities=16%  Similarity=-0.011  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .+.+.......++++.++++.|.+.++.+-+.+.+..-.....+.+.+..|  ++++|...|+......+.++..+..++
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A  208 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA  208 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            345556667889999999999999999998887765544444555666666  599999999999888888999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++..+|++++|.+.++++++.+|++++...++..+..
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999998888766643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.22  E-value=2.3e-05  Score=60.00  Aligned_cols=77  Identities=19%  Similarity=0.068  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHH
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT---NKRASLSA  434 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l  434 (442)
                      .+.+.++.++-.+|+.++|+.+|++++.....   ..+++..+|..+..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            56789999999999999999999999987533   3679999999999999999999999999999998   55555544


Q ss_pred             HHH
Q 013459          435 DRL  437 (442)
Q Consensus       435 ~~~  437 (442)
                      +.+
T Consensus        82 Al~   84 (120)
T PF12688_consen   82 ALA   84 (120)
T ss_pred             HHH
Confidence            433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.21  E-value=4.8e-05  Score=61.27  Aligned_cols=80  Identities=24%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             cchHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-----------HHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQA  379 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-----------~~~A  379 (442)
                      .+|.+++.+++.|..+...          ..+++|+.-|++++.++|+..++++.+|++|..++.           |++|
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            3478888888888888765          346778999999999999999999999999988763           8899


Q ss_pred             HHHHHHHHhcCCccHHHHHHH
Q 013459          380 EADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       380 ~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..+|+++...+|+|..++..+
T Consensus       100 ~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHH
Confidence            999999999999986655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.17  E-value=1.8e-06  Score=49.71  Aligned_cols=32  Identities=38%  Similarity=0.429  Sum_probs=17.8

Q ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013459          383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  414 (442)
Q Consensus       383 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~  414 (442)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45555555555555555555555555555553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.17  E-value=9.5e-06  Score=80.70  Aligned_cols=110  Identities=17%  Similarity=0.175  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..|..+|..|.+.+++.+|+..|+.++..+|.+...|..+|.+|...|+|..|++.|.++..++|.+.-..|..+.+...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            34566888899999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      +|+|.+|+..++..+.........+..++.
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE  672 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTGQNGLAE  672 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            999999999888887766554444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.16  E-value=3.3e-05  Score=68.29  Aligned_cols=73  Identities=14%  Similarity=0.067  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      ....+++.+|..|+..|+|++|+..|+++++.+|++   +++++.+|.++..+|++++|.+.|+++++..|+...+
T Consensus       178 ~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        178 YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            346789999999999999999999999999998874   7899999999999999999999999999999988654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.16  E-value=8.2e-05  Score=72.11  Aligned_cols=99  Identities=15%  Similarity=0.037  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      .-.++.+|..|-..|++++|+++++++|+..|...+.|...|.++-+.|++++|...++.+..++..+.-.....+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            35668889999999999999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             HcCCHHHHHHHHHHHHhhC
Q 013459          406 MLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~  424 (442)
                      +.|+.++|.+.+..-.+.+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999887654443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.15  E-value=2.1e-05  Score=78.38  Aligned_cols=120  Identities=21%  Similarity=0.257  Sum_probs=100.4

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH------------------------------------
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY------------------------------------  362 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------------  362 (442)
                      +.-++..+.+|..+|..|...-+...|.++|.+|.++++.+..+                                    
T Consensus       485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n  564 (1238)
T KOG1127|consen  485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN  564 (1238)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence            33346777888888999988888889999999999888765333                                    


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      |..+|..|...+++..|+.+|+.+++.+|.+.+.|..+|.+|...|+|..|++.|.++..++|.+.-.....+.++
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME  640 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence            3456777777778999999999999999999999999999999999999999999999999999877766655554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.15  E-value=3.9e-05  Score=59.82  Aligned_cols=77  Identities=19%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcC---------------HHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS---------------FLQAEA  381 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~---------------~~~A~~  381 (442)
                      .-.+-..++...++..++++++|++|+..+++.|+++|.++   -+++.+|.+++.+..               ..+|..
T Consensus        41 P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~  120 (142)
T PF13512_consen   41 PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFR  120 (142)
T ss_pred             CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHH
Confidence            33345567889999999999999999999999999999875   588999999999887               899999


Q ss_pred             HHHHHHhcCCccHHH
Q 013459          382 DCTKAINLDKKNVKA  396 (442)
Q Consensus       382 ~~~~~l~~~p~~~~~  396 (442)
                      .|+++++..|++..+
T Consensus       121 ~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  121 DFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHCcCChhH
Confidence            999999999987543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.13  E-value=2.7e-06  Score=49.00  Aligned_cols=34  Identities=47%  Similarity=0.658  Sum_probs=31.7

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 013459          348 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA  381 (442)
Q Consensus       348 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~  381 (442)
                      +|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999863

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.04  E-value=9.9e-06  Score=46.89  Aligned_cols=32  Identities=44%  Similarity=0.636  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ++|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.03  E-value=1.4e-05  Score=46.20  Aligned_cols=33  Identities=48%  Similarity=0.651  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      ++|+.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.03  E-value=4.7e-05  Score=68.83  Aligned_cols=104  Identities=26%  Similarity=0.259  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcc--
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN--  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~--  393 (442)
                      ...+..+.+.+.++ +..++++|+.+|++++++.-.  +    ...+..+|.+|... +++++|+++|++++.+....  
T Consensus        72 ~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~  150 (282)
T PF14938_consen   72 FEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS  150 (282)
T ss_dssp             HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence            34455555555555 555999999999999987322  1    46788899999998 99999999999999874211  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                          ...+..+|.++..+++|++|++.|++.....-++
T Consensus       151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence                4567788999999999999999999998765443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.00  E-value=1.4e-05  Score=46.31  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  392 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  392 (442)
                      .+|+++|.+|..++++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45566666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.96  E-value=9.5e-05  Score=66.86  Aligned_cols=105  Identities=19%  Similarity=0.197  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----
Q 013459          324 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  392 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----  392 (442)
                      .-+..+..+|..|... +++++|+++|++++++...+      ...+...+.++.++++|++|+..|+++....-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4577888999999999 99999999999999984322      356778899999999999999999998865321    


Q ss_pred             --c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          393 --N-VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       393 --~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                        + .+.++..+.|+...|+...|.+.+++....+|...
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence              1 24566778899999999999999999999998543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.96  E-value=0.00044  Score=55.77  Aligned_cols=97  Identities=23%  Similarity=0.157  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----------------------CHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------------------NATYYSNRAAAYLESGSFLQAEADCT  384 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~  384 (442)
                      ..+...|......++.++++..+++++.+...                      ...+...++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            34445566667778888888888888887321                      13455677888889999999999999


Q ss_pred             HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      +++..+|.+-.++..+-.+|..+|+..+|++.|+++.+.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.91  E-value=3e-05  Score=44.77  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK  392 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  392 (442)
                      +++.+|.+++++|++++|+++|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.001  Score=58.09  Aligned_cols=98  Identities=18%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK---------------------  385 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~---------------------  385 (442)
                      ..-+..+......+++.+|...|..++...|++.++...++.||...|+.++|...+..                     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            34455667777888888888888888888888888888888888888877666655542                     


Q ss_pred             -------------HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          386 -------------AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       386 -------------~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                                   .+..+|++.++-+.+|..+...|++++|.+.+-..++.+
T Consensus       215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence                         223379999999999999999999999999988887764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.85  E-value=0.00011  Score=46.81  Aligned_cols=47  Identities=19%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      +.+|.+|..+.++|+|++|.++++.+++++|+|..+......+++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            46788888889999999999999999999999988888777776543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.00012  Score=63.25  Aligned_cols=75  Identities=23%  Similarity=0.212  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH---HHHHHH
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA---SLSADR  436 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~l~~  436 (442)
                      .|+.+.-+++.|+|.+|...|..-++..|+.   ++++|+||.+++.+|+|++|...|..+.+-.|+++.+   ...++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6788999999999999999999999999986   6899999999999999999999999999999887755   444444


Q ss_pred             H
Q 013459          437 L  437 (442)
Q Consensus       437 ~  437 (442)
                      +
T Consensus       224 ~  224 (262)
T COG1729         224 S  224 (262)
T ss_pred             H
Confidence            4

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00041  Score=65.72  Aligned_cols=90  Identities=17%  Similarity=0.094  Sum_probs=72.0

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------------
Q 013459          330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-------------------  390 (442)
Q Consensus       330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------------------  390 (442)
                      ++.|.|.|+.++.++|+..++   ..++.+..+...++++++++++|++|+..|+.+.+.+                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            678888888888888888887   4556666677788888888888888888888774432                   


Q ss_pred             -----------Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459          391 -----------KK-NVKAYLRRGTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       391 -----------p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                                 |+ ..+.+|+.+.++...|+|.+|++.+++++.
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                       22 456789999999999999999999999944

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.00025  Score=61.56  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN---------  388 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---------  388 (442)
                      +.+..|.+-..+..+|.||+..++|.+|..+|++.-.+.|+........++.+++.+.+..|+........         
T Consensus        36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l  115 (459)
T KOG4340|consen   36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL  115 (459)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence            34445666678888999999999999999999999999998887777778888888888777766543322         


Q ss_pred             -c--------------------CC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          389 -L--------------------DK--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       389 -~--------------------~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                       +                    -|  +......+.|.+.++.|+|++|++-|+.+++...-++-...+++
T Consensus       116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA  185 (459)
T KOG4340|consen  116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA  185 (459)
T ss_pred             HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence             1                    12  33456677788888888999999999998888776665544444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=9.6e-05  Score=68.84  Aligned_cols=111  Identities=28%  Similarity=0.285  Sum_probs=100.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      .+-|+..+.++..|+-.+..+....|+.+|.++++..|+....+.+++.++++.   |+.-.|+.++..+++++|...++
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            445778888889999999999999999999999999999999999999999886   47788999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      |+.++.++.+++++.+|+++...+....|.+...
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~  481 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDVAR  481 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence            9999999999999999999998888888855443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.00062  Score=58.11  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHH---------------------
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCT---------------------  384 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~---------------------  384 (442)
                      .+.+.+++++.-.++|.-.+..+.+.++.+ |.++.....+|.+.++-|+.+.|..+|+                     
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            344445555555555555555555555554 3344444455555555555555555554                     


Q ss_pred             -------------------HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          385 -------------------KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       385 -------------------~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                                         +.+..+|.++.+..+.|.|+..+|+..+|++.++.+++..|.
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence                               444445555555555555555555555555555555555554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.80  E-value=0.00044  Score=67.17  Aligned_cols=104  Identities=15%  Similarity=0.085  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      .+.+...+.++...|++++|++++++....-.+....+..+|.++.++|++++|...|+.+++.+|+|...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            45667778899999999999999999888888888999999999999999999999999999999999999988888873


Q ss_pred             Hc-----CCHHHHHHHHHHHHhhCCCChH
Q 013459          406 ML-----GYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       406 ~~-----~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      ..     .+.+.-.+.|++..+..|....
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~  112 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDA  112 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccc
Confidence            22     2456677788888777776443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.79  E-value=0.00072  Score=51.54  Aligned_cols=83  Identities=13%  Similarity=0.076  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          359 NATYYSNRAAAYLESG---SFLQAEADCTKAIN-LDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      .....++++.++.+..   +.++.+..++..++ -.|. ..+..|.++..++++++|++++++++.+++.+|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3456778888887765   47788999999986 4444 36788999999999999999999999999999999999888


Q ss_pred             HHHHHhhh
Q 013459          434 ADRLRKVF  441 (442)
Q Consensus       434 l~~~~~~~  441 (442)
                      ...+++.+
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            87777654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.78  E-value=0.00052  Score=61.84  Aligned_cols=111  Identities=14%  Similarity=0.060  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHH
Q 013459          324 QSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAYLR  399 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~  399 (442)
                      ....+|...|..-+. .++.+.|...|+++++..|.+...|......+...++.+.|...|++++..-+...   ..|..
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~  112 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK  112 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            345667777777555 56666688888888888888888888888888888888888888888887655443   45555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      ....-.+.|+.+...+..+++.+..|++.......
T Consensus       113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~  147 (280)
T PF05843_consen  113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS  147 (280)
T ss_dssp             HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            56666677888888888888888888766555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.0002  Score=63.54  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=25.9

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459          332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  385 (442)
Q Consensus       332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~  385 (442)
                      +|.+++..|+|++|+..|+-+.+.+.-+.+.+.+++.|++.+|.|.+|.....+
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence            444555555555555555544444333444444455555555555554444433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.00049  Score=65.22  Aligned_cols=106  Identities=13%  Similarity=0.089  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |+...+++..-.++.+.++|++|+.+.++-....-.+ ...+..+.|+++++..++|+.++.   -+++.+.......|+
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ  118 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ  118 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence            6778889999999999999999995544433222112 222688999999999999999998   556666778888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASL  432 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  432 (442)
                      +++++++|++|.+.|+...+.+-++.+...
T Consensus       119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~  148 (652)
T KOG2376|consen  119 VLYRLERYDEALDIYQHLAKNNSDDQDEER  148 (652)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence            999999999999999999988877665543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00024  Score=65.77  Aligned_cols=114  Identities=17%  Similarity=0.107  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHH-HhhCCC------CH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEA-IKLNGN------NA--TYYSNRAAAYLESGSFLQAEADCTKAINL-----  389 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~------~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----  389 (442)
                      +.+..++...+.++..|+|..|.+.+... +...+.      ..  ..++++|.++++++.|.-+..+|.++++.     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999987654 222222      11  35689999999999999999999999961     


Q ss_pred             ----C---------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          390 ----D---------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       390 ----~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                          .         -...+.+|+.|..|...|+.-.|.++|.++......++..|..++++
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                1         13467999999999999999999999999999999999999999886

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.69  E-value=0.00024  Score=64.34  Aligned_cols=100  Identities=16%  Similarity=0.103  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----G--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDK------  391 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------  391 (442)
                      ..-.++.++|+++.-.|+|+.|+++|++.+.+.    .  ......|.+|..|.-+.+++.||.++.+-+.+..      
T Consensus       233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri  312 (639)
T KOG1130|consen  233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI  312 (639)
T ss_pred             HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345678899999999999999999999887652    2  2356788999999999999999999998776542      


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      ....+++.+|.++..+|+.++|+.+.++.+++
T Consensus       313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  313 GELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            23568899999999999999999888777665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.65  E-value=0.003  Score=57.27  Aligned_cols=98  Identities=14%  Similarity=0.066  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      +......+..+.+.|++++|.+...++++..-+.. .+..  .-..+.++++.=++..++.++..|+++..++.+|..|.
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~  339 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL  339 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            44556678888889999999888888887532221 1111  11123344444455555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC
Q 013459          406 MLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      +.+.+.+|..+|+.+++..|+
T Consensus       340 k~~~w~kA~~~leaAl~~~~s  360 (400)
T COG3071         340 KNKLWGKASEALEAALKLRPS  360 (400)
T ss_pred             HhhHHHHHHHHHHHHHhcCCC
Confidence            555555555555555544443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.65  E-value=0.00015  Score=65.61  Aligned_cols=104  Identities=17%  Similarity=0.161  Sum_probs=85.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD----  390 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----  390 (442)
                      +.-.....+-++|+.|+-.|+|++|+..-+.-+.+..+.      ..++.++|.||.-+|+++.|+++|++.+.+.    
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg  269 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG  269 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence            334566788999999999999999999887777764332      4688899999999999999999999976553    


Q ss_pred             C--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          391 K--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       391 p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      .  ...+..|.+|..|.-+.++++|+.++++-+.+.
T Consensus       270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  235577889999999999999999999877654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.64  E-value=0.00061  Score=56.49  Aligned_cols=79  Identities=14%  Similarity=0.063  Sum_probs=72.9

Q ss_pred             cccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          317 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       317 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      +...-.|..+.+++.+|..+...|+|+.|.+.|+..++++|.+.-+..++|..++.-|+|+-|.+++.+-.+.+|+++-
T Consensus        90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785          90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            3445558999999999999999999999999999999999999999999999999999999999999999999998863

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.62  E-value=0.0014  Score=59.31  Aligned_cols=87  Identities=18%  Similarity=0.103  Sum_probs=79.2

Q ss_pred             HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013459          336 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  415 (442)
Q Consensus       336 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~  415 (442)
                      ..+-+++..-++..++.++..|+++..+..+|..+++.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+.++|.+
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence            356688899999999999999999999999999999999999999999999999874 5566779999999999999999


Q ss_pred             HHHHHHhh
Q 013459          416 DFSYALVL  423 (442)
Q Consensus       416 ~~~~~l~~  423 (442)
                      .+++++.+
T Consensus       383 ~r~e~L~~  390 (400)
T COG3071         383 VRREALLL  390 (400)
T ss_pred             HHHHHHHH
Confidence            99999854

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.60  E-value=0.00013  Score=42.08  Aligned_cols=32  Identities=47%  Similarity=0.674  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ++|+.+|.+|.++|++++|.++|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666666666666666676666666666664

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.60  E-value=0.00011  Score=64.82  Aligned_cols=73  Identities=21%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      ....|.-|+++|.|++|+.+|.+++..+|.|+-.+-+.+.+|+++.+|..|...+..++.++.....++....
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~  172 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM  172 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999999999999998865555544333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.0017  Score=55.58  Aligned_cols=119  Identities=13%  Similarity=0.153  Sum_probs=95.1

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhhcc----cccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 013459          287 GGDRFLLDTVQNMYASLQEQADIATKSK----LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY  362 (442)
Q Consensus       287 ~~d~~ll~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  362 (442)
                      ..+..+......+...+.+.+.+.....    ...++.+-...-.+..+.+..+.-+++|.+|...|++++..+|.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            4566677776666666655554444333    344566666777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHH
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTARE  405 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~  405 (442)
                      .++.+.|++.+|+...|++..+.++...|..   ....+++..+|.
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE  334 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence            9999999999999999999999999999864   345666766654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.0013  Score=57.19  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=79.5

Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013459          335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  414 (442)
Q Consensus       335 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~  414 (442)
                      .+.+..+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|+++..+.|...+..+..++.+++.+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 013459          415 EDFSYA  420 (442)
Q Consensus       415 ~~~~~~  420 (442)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            776544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.58  E-value=0.0066  Score=52.26  Aligned_cols=118  Identities=16%  Similarity=0.118  Sum_probs=94.4

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcC
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG--------SFLQAEADCTKAINLD  390 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~~  390 (442)
                      .|-..++...++..+++.++|++|+...++.+.++|.++   -+++.+|.+++..-        ...+|+..|+.++...
T Consensus        67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry  146 (254)
T COG4105          67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY  146 (254)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence            355578899999999999999999999999999998875   46778888876543        2568888999999998


Q ss_pred             CccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          391 KKNVK-----------------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       391 p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |+..-                 .-+..|..|.+.|.+..|+..++.+++..|+.......+..+..
T Consensus       147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~e  212 (254)
T COG4105         147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEE  212 (254)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            86521                 22345778889999999999999999999888777666665543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.54  E-value=0.004  Score=50.52  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..++..+..+++..+..+++.+|...+++..+.+|.  .++....++..+...|++.+|...|+.++...|+ +++...+
T Consensus       121 A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y  199 (251)
T COG4700         121 AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYY  199 (251)
T ss_pred             CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH
Confidence            356678899999999999999999999999999885  4667778899999999999999999999999884 6677778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYAL  421 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l  421 (442)
                      +..+.++|+.++|...+....
T Consensus       200 ~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         200 AEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHhcchhHHHHHHHHHH
Confidence            999999998877766554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.01  Score=51.02  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          327 EIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       327 ~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ..+.++|..+.+    .+++++|.-.|++.-+..+..+......+.|++++++|++|...++.++..++++++.+.++-.
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            345555555543    4579999999999999888889999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHH-HHHHHHHHhhCCCChHHH
Q 013459          403 AREMLGYYKEA-IEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       403 ~~~~~~~~~~A-~~~~~~~l~~~p~~~~~~  431 (442)
                      +-..+|.-.++ .+.+.+....+|+.+-..
T Consensus       250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  250 LALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             HHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence            98888876554 456777777778766543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.0031  Score=51.63  Aligned_cols=100  Identities=16%  Similarity=-0.014  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      ....++|..++..+++++|+..++.++....+.   .-+-.+++.+..++|.+++|++.++....-+- ........|.+
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi  168 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence            456788999999999999999999999764443   34567889999999999999998776544211 12234567999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      +...|+-++|...|+++++.+++.
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHccCCh
Confidence            999999999999999999998543

>PRK10941 hypothetical protein; Provisional

Probab=97.50  E-value=0.0014  Score=58.06  Aligned_cols=79  Identities=10%  Similarity=0.048  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      -...+.++=..+.+.++|+.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+++.+..-..++
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            3445556667777888888888888888888888888788888888888888888888888888888877765544433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.0041  Score=52.32  Aligned_cols=110  Identities=19%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcc---
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN---  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~---  393 (442)
                      .++..-+..+...++..+.++|+.++++++++.-+.-      .-+..+|.+|... .++++|+.+|+++-......   
T Consensus        71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            3444455555566667799999999999999876532      3344778888764 89999999999987654322   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                         ...+..-+..-..+++|.+|++.|++.....-+|.-....
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys  193 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS  193 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence               3456666777789999999999999998877777655433

>PRK10941 hypothetical protein; Provisional

Probab=97.42  E-value=0.0036  Score=55.41  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ...++=.+|.+.++++.|+++.++.+.++|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+++
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999999999999999999988766665554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.0066  Score=52.21  Aligned_cols=111  Identities=14%  Similarity=0.009  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .+..-.-..++.+..+++-|.+.+++..+++.+  ..+..++..+.+.    +.+..|.-.|+..-...+..+..+..++
T Consensus       137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A  214 (299)
T KOG3081|consen  137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA  214 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence            344444566788888899999999998888643  5566677777664    4689999999999987788889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .|...+++|++|...++.++..++++++...++-.+-
T Consensus       215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999888776553

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.39  E-value=0.0019  Score=49.00  Aligned_cols=67  Identities=28%  Similarity=0.305  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      +...|.....-|+.+.|++.|.+++.+-|.++.+|.+.++++.-+|+.++|+..+++++++..+...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr  112 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR  112 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence            3456788889999999999999999999999999999999999999999999999999999776543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.38  E-value=0.0016  Score=63.07  Aligned_cols=106  Identities=19%  Similarity=0.057  Sum_probs=86.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      ...|+..-.++..|+.+...|+.++|++.|++++....+    ..-.++.++.++..+.+|++|..++.++.+.+.-...
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka  340 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA  340 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence            344788888999999999999999999999999854332    2357889999999999999999999999997655433


Q ss_pred             -HHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 013459          396 -AYLRRGTAREMLGYY-------KEAIEDFSYALVLEP  425 (442)
Q Consensus       396 -~~~~~a~~~~~~~~~-------~~A~~~~~~~l~~~p  425 (442)
                       ..|..|.|+..+++.       ++|.+.|+++-.+..
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence             445568899999998       888888888765543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.37  E-value=0.0063  Score=45.32  Aligned_cols=93  Identities=18%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CC
Q 013459          331 EKGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------DK  391 (442)
Q Consensus       331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p  391 (442)
                      ..|...++.|-|++|...+.++++....            +.-.+..|+..+..+|+|++++.-.+++|..       +.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            4466677889999999999999987422            2345667888999999999999888888754       44


Q ss_pred             cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          392 KN----VKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       392 ~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      +.    ..+.++.+.++..+|+.++|++.|+++-+.
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44    346678999999999999999999998654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.36  E-value=0.00038  Score=40.05  Aligned_cols=30  Identities=27%  Similarity=0.347  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDK  391 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  391 (442)
                      +++.+|.+|.++|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455566666666666666666666666555

...

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.35  E-value=0.027  Score=45.04  Aligned_cols=88  Identities=10%  Similarity=-0.199  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ..-...+..........++.+++..++...--+.|+.+..-..-|..++..|+|.+|+..++.+....|..+.+--.++.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34556788888899999999999999999999999999999999999999999999999999999989988888888999


Q ss_pred             HHHHcCCH
Q 013459          403 AREMLGYY  410 (442)
Q Consensus       403 ~~~~~~~~  410 (442)
                      |+..+++.
T Consensus        87 CL~~~~D~   94 (160)
T PF09613_consen   87 CLYALGDP   94 (160)
T ss_pred             HHHHcCCh
Confidence            99999885

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.35  E-value=0.019  Score=49.48  Aligned_cols=97  Identities=28%  Similarity=0.353  Sum_probs=79.5

Q ss_pred             HHHhcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcCCH
Q 013459          335 QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYY  410 (442)
Q Consensus       335 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~  410 (442)
                      .+...+++++|+..|.+++...|   .....+..++..+...+++++++..+.+++...+. ....+..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            78888999999999999888766   34566666677777888999999999999988888 688888889999988899


Q ss_pred             HHHHHHHHHHHhhCCCChHHH
Q 013459          411 KEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       411 ~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      ++|...+.+++...|......
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~  239 (291)
T COG0457         219 EEALEYYEKALELDPDNAEAL  239 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHH
Confidence            999999999998888743333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.34  E-value=0.0064  Score=56.49  Aligned_cols=107  Identities=16%  Similarity=0.158  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      .-+...|...|.--..+++++.|-..|++|+..+..+...|...+.+-++.+....|...+++++.+-|.-...||.+-.
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y  149 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            34556788888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      +-..+|+...|.+.|++-++..|+...
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~eqa  176 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPDEQA  176 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence            999999999999999999999998643

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.34  E-value=0.00052  Score=64.93  Aligned_cols=105  Identities=21%  Similarity=0.130  Sum_probs=93.3

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH
Q 013459          334 NQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE  412 (442)
Q Consensus       334 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~  412 (442)
                      ......|+...|+.++..++...|... ....+++++..+.+-...|-..+.+++.++...+-.++.+|.+|..+.+.+.
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence            333457999999999999999988654 4567899999999999999999999999997788899999999999999999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          413 AIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       413 A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      |++.|+.+++++|+++...+.+..+.
T Consensus       695 a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999999999988877664

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.34  E-value=0.0024  Score=47.24  Aligned_cols=93  Identities=14%  Similarity=0.270  Sum_probs=76.3

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCccHHHH
Q 013459          332 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      +|..++..|++-+|+++.+..+..++++.   ..+..-|.++.++.           -...+++.|.++..+.|.....+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57889999999999999999999988776   44555677776554           25578999999999999998888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      +.+|.-+-....|+++.+-.++++...
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            888888777778888888888887653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.33  E-value=0.0011  Score=57.94  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .++..-...|....+.|+.+.|..+|+.++.+.|++++++..+|......++.-+|-++|-+++.++|.|.+++.+.+..
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34555667788889999999999999999999999999999999999999999999999999999999999999887643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.32  E-value=0.00046  Score=39.33  Aligned_cols=31  Identities=35%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      +++++|.++.+.|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666665

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.32  E-value=0.0091  Score=51.61  Aligned_cols=117  Identities=27%  Similarity=0.259  Sum_probs=97.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCC---ccHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA-AYLESGSFLQAEADCTKAINLDK---KNVKAY  397 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~  397 (442)
                      .+.....+...+..+...+++.+++..+.+++...+.+......... ++...+++++|+..+++++..+|   .....+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  170 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL  170 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence            35667788899999999999999999999999988877555566666 89999999999999999988777   356667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPT-NKRASLSADRLR  438 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~  438 (442)
                      ...+..+...+++++|...+.+++...+. .......+....
T Consensus       171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (291)
T COG0457         171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY  212 (291)
T ss_pred             HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence            77777788999999999999999999998 455555554443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.31  E-value=0.014  Score=52.62  Aligned_cols=101  Identities=13%  Similarity=-0.040  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      +|....+...+.+..+.|-..|.++.+..+-...+|...|...++ .++.+.|.+.|+++++..|.+...|..+...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566777888888889999999999997766778999999999777 5667779999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCh
Q 013459          407 LGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      .++.+.|...|++++..-+.+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchh
Confidence            9999999999999999887766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0049  Score=54.59  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=69.2

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      +..+..-++-.|.++|.+.+..|+|..|+....+++.++|.+..++++-+.|++.++++++|.++++..++.+.+.-.
T Consensus       111 kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  111 KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            444445577788999999999999999999999999999999999999999999999999999999999888755433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.28  E-value=0.0036  Score=62.39  Aligned_cols=111  Identities=11%  Similarity=-0.053  Sum_probs=87.9

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ....|+..-+..-.|..+++.|++++|..+++..-...+++...+..+-.||..++++++|...|+++++.+|. -+.++
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~  114 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY  114 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence            44556666666667888888899999988888777777777778888888898999999999999999988888 77777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      .+-.+|.+.++|.+-.+.--+..+..|+++-.
T Consensus       115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy  146 (932)
T KOG2053|consen  115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYY  146 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence            78888888888877666666666677877654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.0038  Score=55.34  Aligned_cols=109  Identities=13%  Similarity=0.021  Sum_probs=84.7

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcc---HHHHHHHHHHHHH
Q 013459          331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKN---VKAYLRRGTAREM  406 (442)
Q Consensus       331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~~a~~~~~  406 (442)
                      ..+..++..|++.+|...+++.++-.|.+.-++..--.+++.+|+...-...+++.+.. +++-   ....-.++.++.+
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34556677888888888889999888888877777778888888888888888888866 6555   3333346777888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .|-|++|.+.-++++++++.+.-+...++.+.+
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle  220 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLE  220 (491)
T ss_pred             hccchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence            888999998889999988888777776666654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.23  E-value=0.00023  Score=66.02  Aligned_cols=86  Identities=19%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      .-+|..+..+-+++..+++.++|..|+..+.++++++|....+|+.+|.+.+.++++.+|...|+....+.|+++.+...
T Consensus        32 ~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~  111 (476)
T KOG0376|consen   32 ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRK  111 (476)
T ss_pred             hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence            33477778888899999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHH
Q 013459          400 RGTARE  405 (442)
Q Consensus       400 ~a~~~~  405 (442)
                      +..|-.
T Consensus       112 ~~Ec~~  117 (476)
T KOG0376|consen  112 IDECNK  117 (476)
T ss_pred             HHHHHH
Confidence            777654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.21  E-value=0.0036  Score=64.60  Aligned_cols=94  Identities=9%  Similarity=-0.051  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      .|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|++...|..+..+|.+.
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            4555666666677777776666543 2222 3445666666677777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhh
Q 013459          408 GYYKEAIEDFSYALVL  423 (442)
Q Consensus       408 ~~~~~A~~~~~~~l~~  423 (442)
                      |++++|.+.+++..+.
T Consensus       542 G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        542 GRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            7777777777766544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.17  E-value=0.0033  Score=50.60  Aligned_cols=64  Identities=11%  Similarity=0.082  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ...+..++..+...|++++|+..+++++..+|.+..++..+-.+|...|++.+|++.|++..+.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            3456677888899999999999999999999999999999999999999999999999987543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.0074  Score=56.49  Aligned_cols=90  Identities=10%  Similarity=0.055  Sum_probs=56.8

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Q 013459          347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEP  425 (442)
Q Consensus       347 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p  425 (442)
                      .+|+++....+.+...|.+......+.+.+.+--+.|.+++..+|++++.|..-|.-.++.+. .+.|.+.|.++++.+|
T Consensus        92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np  171 (568)
T KOG2396|consen   92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP  171 (568)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence            445566666666666666666655555556666666777777677776666666665555444 6666666777777777


Q ss_pred             CChHHHHHHHH
Q 013459          426 TNKRASLSADR  436 (442)
Q Consensus       426 ~~~~~~~~l~~  436 (442)
                      +++..|...-+
T Consensus       172 dsp~Lw~eyfr  182 (568)
T KOG2396|consen  172 DSPKLWKEYFR  182 (568)
T ss_pred             CChHHHHHHHH
Confidence            76666654433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.14  E-value=0.0053  Score=57.58  Aligned_cols=62  Identities=11%  Similarity=-0.134  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                      .+...+++|..++|+.+||++.++..++.+|.  +..+++++-.++..++.|.++.+.+.+.=+
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            45667899999999999999999999998875  456899999999999999999998888643

The molecular function of this protein is uncertain.

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.11  E-value=0.023  Score=60.52  Aligned_cols=96  Identities=9%  Similarity=-0.027  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRG  401 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a  401 (442)
                      ..|..+...+.+.|++++|.++|++..+.    .| +...|..+..+|.+.|++++|++.|++..+.+ +.+...|..+.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI  621 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV  621 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence            34555555555666666666666555432    22 23445555555555666666666665555544 23344555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhh
Q 013459          402 TAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      ..|.+.|++++|.+.|++..+.
T Consensus       622 ~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        622 NSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Confidence            5555555555555555555543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0009  Score=56.32  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ..-|..++...+|..|+.+|.+++.++|..+..|-+.+.|+.++.+++......+++++++|+...++..++...
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            345777888899999999999999999999999999999999999999999999999999999998888887664

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.09  E-value=0.0011  Score=37.66  Aligned_cols=30  Identities=17%  Similarity=0.142  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKK  392 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  392 (442)
                      ++.+|.++.+.|++++|++.|++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444455555555555555555555544443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.02  Score=48.74  Aligned_cols=108  Identities=19%  Similarity=0.099  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KK  392 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~  392 (442)
                      ..+..|..-+..+...++|++|...+.++.+-..++      ..+|...+++...+..+.|+..+|+++..+.     |+
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence            345566667777788899999999999998665544      3566677888888899999999999998764     33


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459          393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      -...-...+-=..+.-+.++|++.|++++.+..++...+
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~  147 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQ  147 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHH
Confidence            222222233334466678999999999887765544433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.07  E-value=0.0067  Score=43.90  Aligned_cols=65  Identities=22%  Similarity=0.166  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHcCC
Q 013459          345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGY  409 (442)
Q Consensus       345 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~  409 (442)
                      .+..+++.++.+|++..+.+.++..+...|++++|+..+-.+++.+++.  ..+.-.+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3556788888999999999999999999999999999999999888765  3333333344444443

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.06  E-value=0.03  Score=59.72  Aligned_cols=94  Identities=16%  Similarity=-0.002  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTARE  405 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~  405 (442)
                      .|..+...+.+.|++++|.+++++..+.. +.+...|..+...|.+.|++++|++.|++..+.. ..+...|..+...|.
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~  730 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC  730 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            44444555555555555555555554432 1233445555555555555555555555543321 112334444555555


Q ss_pred             HcCCHHHHHHHHHHHH
Q 013459          406 MLGYYKEAIEDFSYAL  421 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l  421 (442)
                      +.|++++|.+.|++..
T Consensus       731 k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        731 EGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            5555555555555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.05  E-value=0.012  Score=61.62  Aligned_cols=111  Identities=13%  Similarity=-0.064  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTA  403 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~  403 (442)
                      -..+..+...|.+.+++++|.++|+..++...+....|..++..++..++-++|...+.+|++--|.  +.+.....|++
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            3455566777777778888888888888777777777888888887777777888888888877776  56666777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      -++.|+.+.+...|+-.+.-+|...+.|..+-.
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            778888888888888888888777777765443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.04  E-value=0.015  Score=58.27  Aligned_cols=93  Identities=16%  Similarity=0.039  Sum_probs=86.1

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013459          334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  413 (442)
Q Consensus       334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A  413 (442)
                      .-....+++..|+....+.++.+|+..-+....|..+.++|+.++|..+++..-...+++-..+..+-.||..++++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            34567889999999999999999999999889999999999999999888888888888888898999999999999999


Q ss_pred             HHHHHHHHhhCCC
Q 013459          414 IEDFSYALVLEPT  426 (442)
Q Consensus       414 ~~~~~~~l~~~p~  426 (442)
                      ...|++++..+|+
T Consensus        97 ~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   97 VHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHhhCCc
Confidence            9999999999999

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.99  E-value=0.0041  Score=39.64  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .++.++..++++|+|++|..+++.+++.+|+|.++....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            456667777777777777777777777777776665443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.018  Score=48.64  Aligned_cols=105  Identities=15%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----
Q 013459          326 AEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----  394 (442)
Q Consensus       326 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----  394 (442)
                      +..+..+|..|-.. .++++|+.+|+++-+....+      ...+.-.+..-.++++|.+|+..|+++....-+|.    
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            44556677777665 88999999999988764432      24455567777889999999999999887655442    


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          395 ---KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       395 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                         ..++..|.|+....+.-.+...+++..+++|.....
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence               355667888888888888999999999999976543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.94  E-value=0.01  Score=55.70  Aligned_cols=111  Identities=18%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGT  402 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~  402 (442)
                      .-+-+.+|.++.+.|+.+||++.+...++.+|.  +..+++++..++..+++|.++.+.+.+--... |......|..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344567899999999999999999999988775  45789999999999999999999888864332 555666666665


Q ss_pred             HHHH-cCC---------------HHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          403 AREM-LGY---------------YKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       403 ~~~~-~~~---------------~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      +..+ .++               -..|.+.+.+|++.+|-.+.....++.
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~  388 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS  388 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence            5432 222               134678899999999988776655443

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.92  E-value=0.011  Score=57.52  Aligned_cols=97  Identities=18%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHcCCHHHHH
Q 013459          339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYKEAI  414 (442)
Q Consensus       339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~  414 (442)
                      ..+.++|.+++++..+..|+..-..+..|.++...|+.++|++.|++++.....    ..-.++.++.++..+.++++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            457788999999999999999999999999999999999999999998853322    2447788999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHH
Q 013459          415 EDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       415 ~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      ++|.++.+.+.-+...+.++.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~  346 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHH
Confidence            999999998766555554444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.90  E-value=0.012  Score=60.87  Aligned_cols=90  Identities=12%  Similarity=-0.041  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      +..+...+.+.|++++|.+.+.++++.. +.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|.+.
T Consensus       328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~  404 (697)
T PLN03081        328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNH  404 (697)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHc
Confidence            3333344444444444444444443332 22233334444444444444444444443322   1223344444444444


Q ss_pred             CCHHHHHHHHHHHH
Q 013459          408 GYYKEAIEDFSYAL  421 (442)
Q Consensus       408 ~~~~~A~~~~~~~l  421 (442)
                      |+.++|++.|++..
T Consensus       405 G~~~~A~~lf~~M~  418 (697)
T PLN03081        405 GRGTKAVEMFERMI  418 (697)
T ss_pred             CCHHHHHHHHHHHH
Confidence            44444444444433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.013  Score=49.70  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      .-.+.+...|++..++|-+++++....+..+|.+..+|+.+|.++...=+..+|..+|.++++++|.-..+.
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            345778999999999999999999999999999999999999999999999999999999999999754443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.86  E-value=0.0023  Score=37.30  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSY  419 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~  419 (442)
                      |.++|.+|.++|++++|+.+|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445555555555555555555

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.85  E-value=0.0045  Score=54.17  Aligned_cols=67  Identities=25%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      ..+.|+.++|...|+.++.+.|.+++++..+|+.....++.-+|-++|-+++.++|.|.++..+.++
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            4578999999999999999999999999999999999999999999999999999999998876654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.80  E-value=0.0032  Score=58.54  Aligned_cols=83  Identities=20%  Similarity=0.215  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---------C---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------N---------GNNATYYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      ....|+++|.++++.+.|.-+..+|.++++.         .         ...-.+.|+.|..|.+.|++..|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            5566789999999999999999999999961         1         123578999999999999999999999999


Q ss_pred             HhcCCccHHHHHHHHHHHHHc
Q 013459          387 INLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       387 l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      .+..-.++..|..++.|+...
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            999989999999999998643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.78  E-value=0.055  Score=57.03  Aligned_cols=111  Identities=12%  Similarity=0.014  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .....|...+..++++++-+.|..++.+|++.-|.  +.......+++.++.|+.+.+...|+-.+.-+|...+.|.-+.
T Consensus      1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            46678999999999999999999999999999887  6788888999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      ..-.++++.+.....|++++.+.=.-..+....
T Consensus      1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred             HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence            999999999999999999988764444444333

>PLN03077 Protein ECB2; Provisional

Probab=96.76  E-value=0.028  Score=59.56  Aligned_cols=102  Identities=8%  Similarity=-0.029  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      +..+-..+.+.|++++|.++|++..+..+  .+...|..+..++.+.|++++|.+.+++. ...| +...|..+-.++..
T Consensus       592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~  669 (857)
T PLN03077        592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRI  669 (857)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH
Confidence            33333444455555555555555442211  12234444455555555555555554443 1222 12333333333344


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASL  432 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~  432 (442)
                      .++.+.+....+++++++|++...+.
T Consensus       670 ~~~~e~~e~~a~~l~~l~p~~~~~y~  695 (857)
T PLN03077        670 HRHVELGELAAQHIFELDPNSVGYYI  695 (857)
T ss_pred             cCChHHHHHHHHHHHhhCCCCcchHH
Confidence            44444444444444444444444333

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.74  E-value=0.11  Score=43.22  Aligned_cols=103  Identities=17%  Similarity=0.068  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHH--
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVK--  395 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~--  395 (442)
                      .+.-..+..+|..|.+.|++++|++.|.++.+.....   .+.+..+..+.+..+++..+..+..++-.+-.  .+.+  
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            4556789999999999999999999999988764332   46777888889999999999999999876532  2222  


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          396 --AYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       396 --~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                        .....|..+...++|.+|.+.|..+..-..
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence              233457778889999999999887765543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.68  E-value=0.03  Score=47.96  Aligned_cols=99  Identities=20%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             cccHHHHHHHHHHHHhh----CCC---CHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhcCC------ccHHHHH
Q 013459          339 DKQWLKAISFYTEAIKL----NGN---NATYYSNRAAAYLESGSFL-------QAEADCTKAINLDK------KNVKAYL  398 (442)
Q Consensus       339 ~~~~~~A~~~~~~al~~----~p~---~~~~~~~~~~~~~~~~~~~-------~A~~~~~~~l~~~p------~~~~~~~  398 (442)
                      ...+++|++.|.-|+-.    ..+   -...+..+|.+|..+++.+       .|+..|++++....      +.....|
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            34455555555555432    111   1456777888888888844       55555555554432      2256888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNK--RASLSADRL  437 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~  437 (442)
                      .+|.+..++|++++|.++|.+++.....+.  .+.......
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            899999999999999999999998766555  444444433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.68  E-value=0.0034  Score=36.59  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l  387 (442)
                      +.++|.+|.++|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.67  E-value=0.016  Score=41.93  Aligned_cols=59  Identities=15%  Similarity=0.101  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHH
Q 013459          379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRL  437 (442)
Q Consensus       379 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~  437 (442)
                      .+..+++.+..+|++.++.+.+|..+...|++++|++.+.++++.+++.  ..+...+-.+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~   67 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDI   67 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999998765  4444444333

>smart00028 TPR Tetratricopeptide repeats

Probab=96.63  E-value=0.0038  Score=34.79  Aligned_cols=30  Identities=43%  Similarity=0.575  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      +++.+|.++...+++++|..+++++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0033  Score=56.19  Aligned_cols=114  Identities=27%  Similarity=0.351  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCC-----------C--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-----------N--------NATYYSNRAAAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  387 (442)
                      +...+.+...++.++|++|..-|.+++..-.           +        -...+.+++.+-++.+.+..|+.....++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            4445567788889999998888888875421           1        12345668888999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +.++....++|..+..+..+.++++|++.++.+....|++......+...++.
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999988877766654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.58  E-value=0.23  Score=39.14  Aligned_cols=87  Identities=9%  Similarity=-0.120  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .-...+.+.........+.+++..++...--+.|+....-.--|.+++..|+|.+|+..++.+....+..+-+.-.++.|
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            34456667777777899999999999998889999999988899999999999999999999999888878777788999


Q ss_pred             HHHcCCH
Q 013459          404 REMLGYY  410 (442)
Q Consensus       404 ~~~~~~~  410 (442)
                      +.-+|+.
T Consensus        88 L~al~Dp   94 (153)
T TIGR02561        88 LNAKGDA   94 (153)
T ss_pred             HHhcCCh
Confidence            9999885

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.12  Score=48.48  Aligned_cols=101  Identities=15%  Similarity=0.066  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      -.-+..|...|....++.+...|-+.+-.+|...|.+. .+.....+-.++++++.+.+.|++-+.-.|.+..+|...|.
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaE  479 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAE  479 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence            34566777888888888888888888888888888763 33444566677888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC
Q 013459          403 AREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      .-..+|+.+.|...|+-|++..
T Consensus       480 lE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  480 LETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHhhhHHHHHHHHHHHhcCc
Confidence            8888888888888887777553

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.55  E-value=0.018  Score=52.75  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCC-C-----C-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNG-N-----N-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~-----~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      .+.........|+|..|+++..+...+.. .     +     ..+-..+..||+++++.+.|+.+..+.+.++|.++.-+
T Consensus       186 ~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnH  265 (569)
T PF15015_consen  186 CYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNH  265 (569)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHH
Confidence            33333444444555555555555443322 1     1     22345688999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~  420 (442)
                      ...|.|+..+.+|.+|.+.+--+
T Consensus       266 LrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  266 LRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988765443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.55  E-value=0.026  Score=50.83  Aligned_cols=103  Identities=18%  Similarity=0.149  Sum_probs=84.2

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----N------ATYYSNRAAAYLESGSFLQAEADCTKAINLD-  390 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-  390 (442)
                      .--+.+++..++..+-+.+||++|..+..++.++-..    +      ..+.+.++..+..+|+.-.|.++++.+.++. 
T Consensus       158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            3446678999999999999999999999999887432    2      3466778889999999999999999987764 


Q ss_pred             -----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          391 -----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       391 -----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                           +-....+..+|.+|...|+.+.|..-|+.++..-
T Consensus       238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence                 2334566778999999999999999999988653

>smart00028 TPR Tetratricopeptide repeats

Probab=96.53  E-value=0.005  Score=34.27  Aligned_cols=31  Identities=32%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK  392 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  392 (442)
                      +++.+|.++..++++++|+.+++++++.+|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666666553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.51  E-value=0.0041  Score=52.12  Aligned_cols=62  Identities=18%  Similarity=0.162  Sum_probs=57.3

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      ....+.++++.|.++|.+++++.|+...-|+.+|....+.|+++.|.+.|++.++++|++..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            45677899999999999999999999999999999999999999999999999999998743

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.44  E-value=0.034  Score=50.06  Aligned_cols=98  Identities=18%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--------  392 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--------  392 (442)
                      .....+++.+.-.+.|+++++.|+++++...++      ..++..+|..+-+++++++|+-+..++..+-..        
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            567778999999999999999999999875443      357788999999999999999999998876321        


Q ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          393 --NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       393 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                        ..-++|.++.++..+|+.-+|.++++++.++.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence              13467889999999999999999999987763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.39  E-value=0.043  Score=58.69  Aligned_cols=99  Identities=16%  Similarity=0.043  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------H
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V  394 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~  394 (442)
                      ......++..++..|++++|...++++++..+...     .+...+|.++...|++++|...+++++......      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            44555678889999999999999999998654432     356778999999999999999999998753321      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      .++.++|.++...|++++|...+++++++.
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            356778999999999999999999998863

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.37  E-value=0.056  Score=41.53  Aligned_cols=79  Identities=8%  Similarity=0.019  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhcc---cHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDK---QWLKAISFYTEAIK-LNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .+..+++|.++.++.   +.++.+.+++..++ -+|+. .+..+.++..++++++|+.++++.+.+++..|+|.++.-..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            456778888887765   56788999999996 44443 46788899999999999999999999999999999887554


Q ss_pred             HHHH
Q 013459          401 GTAR  404 (442)
Q Consensus       401 a~~~  404 (442)
                      -.+.
T Consensus       112 ~~ie  115 (149)
T KOG3364|consen  112 ETIE  115 (149)
T ss_pred             HHHH
Confidence            4443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.058  Score=52.22  Aligned_cols=98  Identities=15%  Similarity=0.100  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..+.+.|..+++.++|..+++.|...+..-|.+      .....+++.||..+.+.+.|.+.++.|-+.+|.++-.-+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            467788999999999999999999999886654      45677889999999999999999999999999998887778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      -.+....+.-++|+.+..+.....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhh
Confidence            888888899999999888776554

>PLN03077 Protein ECB2; Provisional

Probab=96.30  E-value=0.081  Score=56.17  Aligned_cols=100  Identities=13%  Similarity=0.012  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKAYLRR  400 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~  400 (442)
                      +...|..+...|.+.|+.++|+++|++..+.  .|+. ..+..+-..+.+.|++++|.++|+...+..+  .+.+.|..+
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            4567888888899999999999999988764  4544 3455555667788999999999988874332  245677778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ..+|.+.|++++|.+.+++. ...|+
T Consensus       632 v~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        632 VDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            88889999999999888875 34555

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.28  E-value=0.14  Score=48.04  Aligned_cols=117  Identities=18%  Similarity=0.107  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C--C----
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINL-D--K----  391 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--p----  391 (442)
                      ......+...+....+.|+++.|...+.++...++.    .+.+....+..+...|+..+|+..++..+.. .  .    
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            456778899999999999999999999998876522    4677788899999999999999998887761 0  0    


Q ss_pred             ---------------------------ccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          392 ---------------------------KNVKAYLRRGTAREML------GYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       392 ---------------------------~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                                                 ...++++.+|.....+      ++++++.+.|+++.+++|+...++..++...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                       0134566677766666      7888899999999999999998888777765


Q ss_pred             h
Q 013459          439 K  439 (442)
Q Consensus       439 ~  439 (442)
                      .
T Consensus       303 ~  303 (352)
T PF02259_consen  303 D  303 (352)
T ss_pred             H
Confidence            4

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.19  E-value=0.0087  Score=50.25  Aligned_cols=61  Identities=23%  Similarity=0.318  Sum_probs=56.8

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      ...+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++.-
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4557789999999999999999999999999999999999999999999999999998754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.17  E-value=0.058  Score=57.71  Aligned_cols=99  Identities=12%  Similarity=-0.002  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----c
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK-----K  392 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-----~  392 (442)
                      ...+..+|..++..|++++|...+++++.+...        ....+..+|.++...|++++|...+++++....     .
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            345566777778888888888888887775221        122345667777778888888888888766422     1


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      ...++..++.++...|++++|.+.++++..+.
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            23455567778888888888888888876653

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.16  E-value=0.014  Score=51.28  Aligned_cols=80  Identities=11%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN-RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ..+.+...|.+.+....+.+.|.+-...|.+++..+|.+.+.|.. .+.-+...++++.+...|.++++.+|+++..|+.
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            335666677777777777777777777777777777777777665 3344555677777777777777777777776654


Q ss_pred             H
Q 013459          400 R  400 (442)
Q Consensus       400 ~  400 (442)
                      .
T Consensus       182 y  182 (435)
T COG5191         182 Y  182 (435)
T ss_pred             H
Confidence            3

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.25  Score=42.27  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------H
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V  394 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~  394 (442)
                      +..+-+.+..+.....+.|+..+|+++..+.     |+....-...+-=.....++++|++.|++++..-...      .
T Consensus        71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~  150 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF  150 (308)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3444455555556667777777777776652     3333333333333445666777777777766543221      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSY  419 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~  419 (442)
                      +.+-..+.++.....|++|...+.+
T Consensus       151 el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  151 ELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            2333345566666666666655544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.065  Score=47.84  Aligned_cols=106  Identities=11%  Similarity=-0.021  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc---HHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKN---VKAYL  398 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~---~~~~~  398 (442)
                      |-..-+.-..+..+...|-|++|.+..++++++++.+..+....+.++...++++++.+.+.+--..= ...   ..-|+
T Consensus       172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW  251 (491)
T KOG2610|consen  172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW  251 (491)
T ss_pred             cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence            33344455667788899999999999999999999999999999999999999999999887653221 111   22345


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--hhCCCCh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYAL--VLEPTNK  428 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l--~~~p~~~  428 (442)
                      .-+.++.+-++|+.|+..|.+-+  ++..++.
T Consensus       252 H~Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            56888889999999999998765  4555555

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.061  Score=46.95  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ....++=..+.+.++++.|....++.+.++|+++.-+..+|.+|.++|-+..|+++++..++.-|+.+.+-.....
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            3444455566777888888888888888888888888888888888888888888888888888887776554443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.85  E-value=0.011  Score=52.77  Aligned_cols=75  Identities=24%  Similarity=0.097  Sum_probs=69.4

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  392 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  392 (442)
                      .+..+|..+..+-.++.++++.++...|+..+..+++++|+...-|-.++..+..+|+|++|..+++.+++++-+
T Consensus       140 ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  140 AIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             ccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            455668888999999999999999999999999999999999999999999999999999999999999998743

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.094  Score=45.83  Aligned_cols=76  Identities=25%  Similarity=0.289  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++=..+...++++.|....++.+.++|+++.-+--.|.+|.++|.++-|++.++..++..|+++.+.....++.+
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~  260 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE  260 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3445667889999999999999999999999989899999999999999999999999999999887665555543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.69  E-value=0.23  Score=39.80  Aligned_cols=81  Identities=15%  Similarity=-0.072  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ..+.....+-.+.++..++...+.-+-.+.|+.++.-..-|.++...|++.+|+..|+.+.+-.|..+.+...++.|.+.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            44556667777888999999999999999999999999999999999999999999999999999999999888888765


Q ss_pred             h
Q 013459          441 F  441 (442)
Q Consensus       441 ~  441 (442)
                      +
T Consensus        91 ~   91 (160)
T PF09613_consen   91 L   91 (160)
T ss_pred             c
Confidence            4

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.31  Score=42.18  Aligned_cols=103  Identities=14%  Similarity=0.053  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCccHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      |.+-.+|..+-.++... .+..+-++.++++++.+|.+...|..+=.+....|++. .-+...++++..+..|-.+|...
T Consensus        74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR  153 (318)
T KOG0530|consen   74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR  153 (318)
T ss_pred             cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence            44444444443333332 24455556666666666666666666655555566655 55556666666666666666655


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      -.+....+.+++-+++..+.++.+-
T Consensus       154 qW~~r~F~~~~~EL~y~~~Lle~Di  178 (318)
T KOG0530|consen  154 QWVLRFFKDYEDELAYADELLEEDI  178 (318)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhh
Confidence            5555555555555555555544443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.63  E-value=0.32  Score=44.85  Aligned_cols=108  Identities=7%  Similarity=-0.106  Sum_probs=81.9

Q ss_pred             cccccchHHHHHHHHHHHHHHhccc------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459          317 TNTFNQKQSAEIAKEKGNQAYKDKQ------------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT  384 (442)
Q Consensus       317 ~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~  384 (442)
                      ....++|.+.+.|..+....-..-.            .+..+.+|++|++.+|++...+..+-.+..+.-+.++..+-++
T Consensus        10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we   89 (321)
T PF08424_consen   10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE   89 (321)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3567788888888888766544322            4566778999999999998888888888888888888899999


Q ss_pred             HHHhcCCccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 013459          385 KAINLDKKNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       385 ~~l~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~  424 (442)
                      +++..+|+++..|..+-....   ..-.+++..+.|.++++.-
T Consensus        90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            999999998888865533322   2335788888898888653

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.14  Score=44.13  Aligned_cols=148  Identities=11%  Similarity=0.014  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013459          291 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA  369 (442)
Q Consensus       291 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~  369 (442)
                      +++++-..+.+.+..........- ..-+.+.|.+-++|..+-...-..|++. .-++..++++..+..+..+|..+-.+
T Consensus        78 TVW~yRr~iL~~l~~dL~~El~~l-~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~  156 (318)
T KOG0530|consen   78 TVWQYRRVILRHLMSDLNKELEYL-DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWV  156 (318)
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHH-HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHH
Confidence            344444444443333332222221 2335566788889988888888888888 77888999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM-LG-----YYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ...-+.|+.-+++..++++.+-.|-.+|...=.+... .|     ..+.-+.+..+.+.+.|+|..+|.++..+.+
T Consensus       157 ~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~  232 (318)
T KOG0530|consen  157 LRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLE  232 (318)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence            9999999999999999999988777777654333322 22     2455667888899999999999999988765

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.46  E-value=0.36  Score=46.64  Aligned_cols=103  Identities=22%  Similarity=0.038  Sum_probs=85.7

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhcCCccHHHHHHH------HHHH
Q 013459          332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-KAINLDKKNVKAYLRR------GTAR  404 (442)
Q Consensus       332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~l~~~p~~~~~~~~~------a~~~  404 (442)
                      +...+...++...+......++..+|++..++.+++......|....+...+. .+....|++.+....+      +..+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            67777788899899999999999999999999999988888877666665554 4889999987766555      8888


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      ..+++-.++...++++..+.|.+++....+
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence            888899999999999999999987765444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.34  E-value=1.4  Score=41.43  Aligned_cols=53  Identities=17%  Similarity=0.103  Sum_probs=47.5

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459          367 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       367 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  420 (442)
                      |..++..|+|.++..+..-+.+..| ++.++..+|.|+....+|++|..++.+.
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            4556788999999999999999999 8999999999999999999999988654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.30  E-value=1.6  Score=39.35  Aligned_cols=103  Identities=14%  Similarity=0.036  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhh----CC---CC-------HHHHHHHHHHHHHhcCHHH---HHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKL----NG---NN-------ATYYSNRAAAYLESGSFLQ---AEADCT  384 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---~~-------~~~~~~~~~~~~~~~~~~~---A~~~~~  384 (442)
                      ..-+..+++.|...++.+ +|++|+..+++++++    ..   ..       ...+..++.+|.+.+.++.   |....+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            567788999999999999 999999999999987    21   11       3466778899988887554   444445


Q ss_pred             HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      .+-...|+.+..++..=.++.+.++.+++.+.+.+++..-+
T Consensus       112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            55555677777775555555558888888888888887654

It is also involved in sporulation [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.30  E-value=0.43  Score=43.97  Aligned_cols=83  Identities=8%  Similarity=-0.055  Sum_probs=56.8

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459          352 AIKLNGNNATYYSNRAAAYLESGS------------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY  419 (442)
Q Consensus       352 al~~~p~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  419 (442)
                      .++.+|++..+|..+....-..-.            .+.-+..|++|++.+|++...+..+-.++.+..+-++..+.+++
T Consensus        11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~   90 (321)
T PF08424_consen   11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE   90 (321)
T ss_pred             HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            455667777777766655544422            45566677777777777777777766667777777777777888


Q ss_pred             HHhhCCCChHHHHHH
Q 013459          420 ALVLEPTNKRASLSA  434 (442)
Q Consensus       420 ~l~~~p~~~~~~~~l  434 (442)
                      ++..+|++...|..+
T Consensus        91 ~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   91 LLFKNPGSPELWREY  105 (321)
T ss_pred             HHHHCCCChHHHHHH
Confidence            888777777776544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.28  E-value=0.27  Score=33.95  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHhcCHHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA---AAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---~~~~~~~~~~~A~~~~~~~l  387 (442)
                      .+....+.|..++.+++.++|+..++++++..++..+.+..+|   .+|...|+|++.+++..+=+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777777777777777777666655444443   55666677777666654433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.27  E-value=0.11  Score=51.83  Aligned_cols=116  Identities=29%  Similarity=0.409  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      .+......++.+++.++|.+|..-|..++.+-|.+    .....+.+.|+++  +++|..++..+.-++...|....++.
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll  131 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL  131 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence            44456667888999999999988888888887743    4556667777766  46899999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ..+.+|...+.++-|.+.+.-....+|++.++.....+++..
T Consensus       132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999998777766666543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.25  E-value=0.21  Score=48.65  Aligned_cols=102  Identities=16%  Similarity=0.180  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------------------NATYYSNRAAAYLESGSFLQAEADCTK  385 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~  385 (442)
                      +.+.+|...|..-++..+++.|..+++++...-..                  +...|..++......|-++.....|++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45667777777777777777777777777654111                  234555666666666777777777777


Q ss_pred             HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      .+.+.--.+....|+|..+.+...+++|.+.|++.+.+.+
T Consensus       503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            7766666666666666666666666666666666666654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.06  E-value=0.15  Score=48.05  Aligned_cols=77  Identities=12%  Similarity=0.065  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .+...|.+......+.+.|.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|..+
T Consensus       103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY  180 (568)
T ss_pred             CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence            4677888888888888889999999999999999999999998887777776 9999999999999999998877543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.02  E-value=0.054  Score=32.41  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAIN  388 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~  388 (442)
                      ++.++|.+|..+|++++|+.++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344555555555555555555555544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.95  E-value=0.063  Score=32.11  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN  356 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  356 (442)
                      +..+.++|..+...|+|++|+.++++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4578899999999999999999999999863

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.89  E-value=0.13  Score=49.34  Aligned_cols=74  Identities=16%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ..++|+.+.+.+-.-+|-.++.+++.+....+-.++.+|..+..+.+.+.|+++|+++++++|++++.-..+-.
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            55789999999999999999999999998888889999999999999999999999999999999876554433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.87  E-value=0.055  Score=47.73  Aligned_cols=46  Identities=2%  Similarity=0.091  Sum_probs=25.1

Q ss_pred             ccchHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 013459          320 FNQKQSAEIAKE-KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN  365 (442)
Q Consensus       320 ~~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  365 (442)
                      ..+|.+++.|.. -+..++..++++.+...|.+++..+|+++..|+.
T Consensus       135 ~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         135 TKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             hcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            334555555544 3444555556666666666666666666555543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.80  E-value=0.7  Score=45.25  Aligned_cols=101  Identities=18%  Similarity=0.015  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNVKAYLRRGT  402 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~  402 (442)
                      ....|...+...-..|-++.....|++.+++.--.+....|.|+.+....-++++.+.|++.+.+.  |.-.+.|..+-.
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt  555 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT  555 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence            345566677777778888889999999999988889999999999999999999999999999987  445566655432


Q ss_pred             ---HHHHcCCHHHHHHHHHHHHhhCC
Q 013459          403 ---AREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       403 ---~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                         .-+.--+.+.|...|++|++..|
T Consensus       556 kfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  556 KFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence               22333468999999999999988

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.79  E-value=0.39  Score=50.32  Aligned_cols=106  Identities=20%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          331 EKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .....++..+.|++|+..|++.-.-.|..   .++.+..|.....+-       .+.+|+..|+++.. .|.-+--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence            45667788899999999999999988764   467788887765542       47788888877643 35555567778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      |.+|..+|+|++-+++|.-+++..|+.+..-....++
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL  595 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence            8899999999999999999999999998876555444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.72  E-value=0.71  Score=42.93  Aligned_cols=103  Identities=16%  Similarity=0.011  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCccHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLE---SGSFLQAEADCTK-AINLDKKNVKA  396 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~  396 (442)
                      +++...++=..|...++|+.-+++.+..-.+    -++.....+.+|.++-+   .|+.++|+..+.. +....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3445556666778888888888888877666    34556677778888888   8889999999888 44555677888


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCC
Q 013459          397 YLRRGTAREML---------GYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       397 ~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~  427 (442)
                      +-..|.+|...         ...++|+..|.++.+++|+.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            88888887532         13577889999999888653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.65  E-value=1.2  Score=38.13  Aligned_cols=79  Identities=16%  Similarity=0.053  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          324 QSAEIAKEKGNQAYKDKQWL-------KAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      ..+..+..+|..|...++-+       .|++.|.++++....      .....+.+|.++.++|++++|+++|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            56778888899998888744       456666666654322      25788899999999999999999999999865


Q ss_pred             CccH-HHHHHHHH
Q 013459          391 KKNV-KAYLRRGT  402 (442)
Q Consensus       391 p~~~-~~~~~~a~  402 (442)
                      -.+. ..+..+|.
T Consensus       196 ~~s~~~~l~~~AR  208 (214)
T PF09986_consen  196 KASKEPKLKDMAR  208 (214)
T ss_pred             CCCCcHHHHHHHH
Confidence            4332 34444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.54  E-value=0.51  Score=47.54  Aligned_cols=96  Identities=15%  Similarity=0.053  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHh----------hCCC----------CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIK----------LNGN----------NATYYSNRAAAYLESGSFLQAEADCTK  385 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------~~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~  385 (442)
                      -..|++.|..+-..++.+.|+++|+|+-.          -+|.          +...|.--|..+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            35688999999999999999999998632          2332          445666678888889999999999987


Q ss_pred             HHhc---------------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013459          386 AINL---------------------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL  421 (442)
Q Consensus       386 ~l~~---------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  421 (442)
                      +-..                     ...+..+.|.+|..|.+.|++.+|+..|.++.
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            6443                     23566788999999999999999998776654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.53  E-value=0.96  Score=42.48  Aligned_cols=62  Identities=11%  Similarity=0.090  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      .+..-+..-|..++.+|+|.++.-+-....++.| ++.++..+|.|++..++|++|..++...
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3355677789999999999999999888899999 8999999999999999999999987765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.42  E-value=0.67  Score=43.33  Aligned_cols=102  Identities=22%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CC-C--------------------------------CHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NG-N--------------------------------NATYYSNRAAAY  370 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~~~~~~  370 (442)
                      .+...+..+..+...|+..+|+..++..+.. .. .                                ...++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            5678888999999999999999999888871 10 0                                134566667666


Q ss_pred             HHh------cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 013459          371 LES------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY-----------------KEAIEDFSYALVLEPT  426 (442)
Q Consensus       371 ~~~------~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------~~A~~~~~~~l~~~p~  426 (442)
                      ...      +..+++++.|+.+++++|...++|+.+|..+.+.-+.                 ..|+..|-+++.+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            666      7889999999999999999999999999877654221                 3488889999999887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.42  E-value=0.17  Score=29.27  Aligned_cols=32  Identities=19%  Similarity=0.176  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 013459          395 KAYLRRGTAREMLGYYKEAIED--FSYALVLEPT  426 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~--~~~~l~~~p~  426 (442)
                      +.++.+|-.+...|++++|++.  |+-+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4556666666666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.36  E-value=0.95  Score=42.36  Aligned_cols=29  Identities=7%  Similarity=0.031  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAI  353 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al  353 (442)
                      ..+.+.+++.++.++|+++.|.+++++|+
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRAL   67 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERAL   67 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33444444555555555555555555443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.33  E-value=1.8  Score=40.51  Aligned_cols=138  Identities=9%  Similarity=-0.065  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-----hhhccc-ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CHH-
Q 013459          290 RFLLDTVQNMYASLQEQADI-----ATKSKL-STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NAT-  361 (442)
Q Consensus       290 ~~ll~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~-  361 (442)
                      +.+.+....++..+......     ...... .-...++..--.+++.....+.+.|-|..|.+..+-.+.++|. |+- 
T Consensus        61 ~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen   61 DLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence            34555566666666555532     111111 1123333444456777788889999999999999999999998 653 


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHH
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK-----NVKAYLRRGTAREMLGYY---------------KEAIEDFSYAL  421 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~---------------~~A~~~~~~~l  421 (442)
                      +.+.+-....+.++|+--+..++........     -+..-|..+.++..+++.               ++|.+.+++|+
T Consensus       141 ~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai  220 (360)
T PF04910_consen  141 VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI  220 (360)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence            4444556667788898888888876652211     235677888899989888               89999999999


Q ss_pred             hhCCCC
Q 013459          422 VLEPTN  427 (442)
Q Consensus       422 ~~~p~~  427 (442)
                      ...|.-
T Consensus       221 ~~fP~v  226 (360)
T PF04910_consen  221 LRFPWV  226 (360)
T ss_pred             HHhHHH
Confidence            998853

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.26  E-value=1.6  Score=39.57  Aligned_cols=108  Identities=24%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCC
Q 013459          324 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDK  391 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~p  391 (442)
                      ..+...+.+|..+..    ..++.+|...|+++.+..... ..+.+.++.+|..-.       +.+.|+..|.++.... 
T Consensus       107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-  185 (292)
T COG0790         107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-  185 (292)
T ss_pred             ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence            345567778888877    559999999999999885443 344788888876641       3447999999988765 


Q ss_pred             ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          392 KNVKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       392 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                       +..+.+.+|.+|..    ..++++|..+|+++-+...  ..+...+.
T Consensus       186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence             77888999988865    3378999999999998876  55555554

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.23  E-value=0.25  Score=36.11  Aligned_cols=56  Identities=18%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          335 QAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       335 ~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      ...+.++|.+|++.+.+..+.....         ..+..+++.++...|++++|+..+++++++.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3456677777777766666542211         2344556666666666666666666666553

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.14  E-value=2.5  Score=34.44  Aligned_cols=103  Identities=12%  Similarity=0.002  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCccHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N--ATYYSNRAAAYLESGSFLQAEADCTKAI-NLDKKNVKAYLRRG  401 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~~a  401 (442)
                      -+.+..|....+.|+-.+|+..|+++-.-.+-  -  ..+...-+.++...|.|++.....+.+- ..+|-...+.-.||
T Consensus        95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALg  174 (221)
T COG4649          95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALG  174 (221)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHh
Confidence            35677888999999999999999998765432  1  2345555778888999999877776653 44566677888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      .+..+.|++.+|.+.|+.... +.+.++.
T Consensus       175 lAa~kagd~a~A~~~F~qia~-Da~aprn  202 (221)
T COG4649         175 LAAYKAGDFAKAKSWFVQIAN-DAQAPRN  202 (221)
T ss_pred             HHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence            999999999999999998876 4444433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.06  E-value=0.65  Score=38.46  Aligned_cols=69  Identities=19%  Similarity=0.060  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      -..-+-..+|++.++.+++++|+..++..... .-.+.....+|.++...|+-++|...|++++..++..
T Consensus       124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         124 LKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            34456678999999999999999998864332 1123346678999999999999999999999987544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.03  E-value=0.33  Score=35.52  Aligned_cols=58  Identities=22%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          369 AYLESGSFLQAEADCTKAINLDKK---------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       369 ~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ...+.++|.+|++.+.+.......         ...++.++|.++...|++++|++.+++++++...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            356889999998888887755321         1357788999999999999999999999987543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.99  E-value=2  Score=39.65  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CCCH---H--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNNA---T--YYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~---~--~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  394 (442)
                      |...-++...-......|+|+.|+++.+...+..   ++..   .  .+...+.. .-.-+...|..+..+++++.|+..
T Consensus       185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~KL~pdlv  263 (531)
T COG3898         185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDALEANKLAPDLV  263 (531)
T ss_pred             cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCccc
Confidence            4444455555566778899999999988766532   2211   1  11112221 123468888889999999999988


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      .+-..-+.++++.|+..++-+.++.+-+.+|.
T Consensus       264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         264 PAAVVAARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             hHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence            88888889999999999999999988888774

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.88  E-value=1  Score=35.63  Aligned_cols=79  Identities=14%  Similarity=-0.088  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      +......-....++.++...+...--+.|+..+.-..-|.++...|++.+|+..|+...+-.+..+..+..+..|.+.+
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            3344455556889999999999998999999999999999999999999999999999998888888888888887654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.81  E-value=0.45  Score=42.25  Aligned_cols=65  Identities=14%  Similarity=0.045  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ...++..++..+...++++.++..+++.+..+|-+..+|..+-..|++.|+...|+..|+++-++
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999998774

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.75  E-value=0.13  Score=30.10  Aligned_cols=28  Identities=32%  Similarity=0.373  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ++..+|.+.+..++|++|+.+|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555566666666666655544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.51  E-value=1.5  Score=39.09  Aligned_cols=65  Identities=22%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      ...++..++..+...++++.++..+++.+.++|-+-..|..+-.+|...|+...|+..|++.-++
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999887764

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.48  E-value=1.5  Score=43.86  Aligned_cols=93  Identities=18%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhc----c-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          328 IAKEKGNQAYKD----K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       328 ~~~~~a~~~~~~----~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      +.+.+|.+|.+.    . ++..|+.+|.++.++.  ++.+.+.+|.++..-.   ++..|.++|..+.+.  .+..+.++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence            466677778774    3 7889999999998875  5677888999988765   678999999999874  46789999


Q ss_pred             HHHHHHHc----CCHHHHHHHHHHHHhhC
Q 013459          400 RGTAREML----GYYKEAIEDFSYALVLE  424 (442)
Q Consensus       400 ~a~~~~~~----~~~~~A~~~~~~~l~~~  424 (442)
                      ++.||..-    -+.+.|..++.++.+..
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            99998642    36789999999999887

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.36  E-value=0.23  Score=46.60  Aligned_cols=106  Identities=9%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |..+......+...-..|+|+++...+..+-..-.....+..-+-..+++++++++|....+..+.-.-++++..---+.
T Consensus       320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~  399 (831)
T PRK15180        320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG  399 (831)
T ss_pred             CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence            44445555667788888888888887665544433333444455566778888888888888888776667777665666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      ....++-++++..++++.+.++|...
T Consensus       400 sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        400 SADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             cHHHHhHHHHHHHHHHHHhccCChhc
Confidence            67788889999999999999887543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=93.33  E-value=1.3  Score=43.82  Aligned_cols=112  Identities=9%  Similarity=0.076  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 013459          296 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS  375 (442)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  375 (442)
                      +..+...+.+..........-..-.++....++++++|..+.....|++|.++|.+.-.        ..++..|++.+.+
T Consensus       766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~  837 (1189)
T KOG2041|consen  766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLEL  837 (1189)
T ss_pred             hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHh
Confidence            33344444444444433322222344456678899999999999999999999987632        2456788888888


Q ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459          376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY  419 (442)
Q Consensus       376 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  419 (442)
                      |++-    +.+...-|++.+.+-.+|.++...|--++|.++|.+
T Consensus       838 f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  838 FGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             hhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            8874    444455578888888888888888887777776654

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.29  E-value=1.6  Score=40.34  Aligned_cols=113  Identities=16%  Similarity=0.095  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CC--ccH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL--DK--KNV  394 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p--~~~  394 (442)
                      .+..|+.+...+-..++..+-...+...+..     +.+. ....+.+-.+|...+.|++|.+.-.+..--  ..  +..
T Consensus       168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A  247 (493)
T KOG2581|consen  168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA  247 (493)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence            4556777777777777766555555444432     2222 345556678888999999998887776521  11  235


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ..+|.+|.+..-+.+|..|.++|-+|+...|+ ..+.-..+.+.
T Consensus       248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~  290 (493)
T KOG2581|consen  248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVN  290 (493)
T ss_pred             HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHH
Confidence            67788999999999999999999999999998 34444444443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.25  E-value=1.3  Score=41.06  Aligned_cols=99  Identities=18%  Similarity=0.116  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC----HHHHH
Q 013459          341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY----YKEAI  414 (442)
Q Consensus       341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~----~~~A~  414 (442)
                      ..++-+.+...+++.+|+...+|+.+..++.+...  +..=++.++++++.+|.|..+|...=.+......    ..+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            56777888899999999999999999999987764  6888999999999999999988776666544332    45667


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          415 EDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       415 ~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++..+++.-++.|-.+|.+...+.+
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHH
Confidence            7888888888888888887766654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=1.8  Score=38.51  Aligned_cols=39  Identities=10%  Similarity=-0.018  Sum_probs=33.4

Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459          353 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  391 (442)
Q Consensus       353 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  391 (442)
                      +..+|++..+.+.++..+...|++++|..++-..++.+-
T Consensus       229 ~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         229 LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            345899999999999999999999999999888887653

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.10  E-value=0.16  Score=29.71  Aligned_cols=30  Identities=17%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN  356 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  356 (442)
                      +.+..+|.+.+..++|++|+..|.+++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.08  E-value=3.2  Score=39.49  Aligned_cols=99  Identities=18%  Similarity=0.061  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NA--TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------  393 (442)
                      -..+...+-+|.....-+.|++|..+|..+.++-.. +.  -+..+++..|...++-+.-.+.++.   +.|.|      
T Consensus       364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss  440 (629)
T KOG2300|consen  364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS  440 (629)
T ss_pred             HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH
Confidence            346677888999999999999999999999987543 32  3445788999987776654444443   33432      


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                          ..++|..|...+.++++.||...+.+.++..
T Consensus       441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                3467788988999999999999999999886

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.95  E-value=4.6  Score=37.73  Aligned_cols=82  Identities=11%  Similarity=-0.061  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCChHH
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINL----DKKNVKAYLRRGTAREM---LGYYKEAIEDFSY-ALVLEPTNKRA  430 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~  430 (442)
                      +.+...++-.+|...++|+.-++..+..-.+    -++.+...+.+|.++.+   .|+.++|++.+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4567778888999999999999999988777    45667788899999998   9999999999999 56667788888


Q ss_pred             HHHHHHHHhh
Q 013459          431 SLSADRLRKV  440 (442)
Q Consensus       431 ~~~l~~~~~~  440 (442)
                      +-.++++.|-
T Consensus       220 ~gL~GRIyKD  229 (374)
T PF13281_consen  220 LGLLGRIYKD  229 (374)
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.87  E-value=0.16  Score=26.86  Aligned_cols=20  Identities=30%  Similarity=0.081  Sum_probs=8.4

Q ss_pred             HHHHHHHHHhcCHHHHHHHH
Q 013459          364 SNRAAAYLESGSFLQAEADC  383 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~A~~~~  383 (442)
                      +.+|..+..+|++++|...+
T Consensus         5 ~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            33444444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.84  E-value=2.8  Score=37.76  Aligned_cols=102  Identities=17%  Similarity=0.104  Sum_probs=73.4

Q ss_pred             HHhcccHHHHHHHHHHHHhhC----CCC----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CC------c----
Q 013459          336 AYKDKQWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINL----DK------K----  392 (442)
Q Consensus       336 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~----~p------~----  392 (442)
                      ..++|+++.|.-++.|+-...    |+.    ...+++.|....+.+ ++++|..++++++++    ..      +    
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999986654    332    457888899999999 999999999999877    21      1    


Q ss_pred             cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCChHHH-HHHHHH
Q 013459          393 NVKAYLRRGTAREMLGYYK---EAIEDFSYALVLEPTNKRAS-LSADRL  437 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~-~~l~~~  437 (442)
                      ....+..++.+|.+.+.++   +|...++.+-.-.|+.+... ..+.-+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il  131 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL  131 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            1346677899998888765   45556666666667766655 444333

It is also involved in sporulation [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.59  E-value=0.66  Score=28.23  Aligned_cols=25  Identities=20%  Similarity=0.066  Sum_probs=19.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                      +.+|.+|.++|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677778888888888888877774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.55  E-value=2  Score=42.90  Aligned_cols=111  Identities=20%  Similarity=0.076  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHh-----cccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhc
Q 013459          325 SAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINL  389 (442)
Q Consensus       325 ~~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~  389 (442)
                      .......+|.+++.     .+|.+.|+.+|+.+.+.     .-.++.+.+.+|.+|.+-.     +++.|+.+|.++-.+
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            44556666666654     46899999999999771     1125567889999998843     788899999999886


Q ss_pred             CCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          390 DKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       390 ~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .  ++.+.+.+|.++..-.   ++..|.++|..|.+..  +..+...++.|..
T Consensus       323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~  371 (552)
T KOG1550|consen  323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYE  371 (552)
T ss_pred             C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHH
Confidence            5  5668889999987655   5789999999987653  4455556655543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.53  E-value=0.48  Score=27.41  Aligned_cols=20  Identities=20%  Similarity=0.268  Sum_probs=9.8

Q ss_pred             HHHHHHHHHhcccHHHHHHH
Q 013459          329 AKEKGNQAYKDKQWLKAISF  348 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~  348 (442)
                      ++.+|..++++|+|++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            44445555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.43  E-value=1  Score=33.62  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCChHHH
Q 013459          366 RAAAYLESGSFLQAEADCTKAINLDKKNV---KAYLRRGTAREMLGY-----------YKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       366 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      ++.-+++.|++-+|++..+..+..++++.   -.+...|.++.++..           .-.++++|.++..+.|+.+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46678899999999999999998887765   455566888766553           2458899999999999987766


Q ss_pred             HHHHH
Q 013459          432 LSADR  436 (442)
Q Consensus       432 ~~l~~  436 (442)
                      ..++.
T Consensus        82 ~~la~   86 (111)
T PF04781_consen   82 FELAS   86 (111)
T ss_pred             HHHHH
Confidence            65554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.36  E-value=0.63  Score=41.88  Aligned_cols=62  Identities=21%  Similarity=0.116  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       345 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      |..+|.+|+.+.|++-..|+.+|.++...++.-+|+-+|-|++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997665567888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.09  E-value=0.67  Score=40.86  Aligned_cols=57  Identities=25%  Similarity=0.186  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459          364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  420 (442)
                      ...+..|...|.+.+|++..++++.++|-+.+.+..+-.++...|+--.+.+.|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            334566677777777777777777777777777777777777777766666666554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.07  E-value=0.24  Score=26.14  Aligned_cols=24  Identities=25%  Similarity=0.038  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFS  418 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~  418 (442)
                      .+.+.+|.++..+|+.++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.05  E-value=0.66  Score=41.75  Aligned_cols=61  Identities=21%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       379 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |+.+|.+|..+.|.+...+..+|.++...++.=+|+-+|-+++...--.+.+..++..+-+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~   61 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE   61 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999877666778777776654

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.96  E-value=1.5  Score=30.35  Aligned_cols=60  Identities=15%  Similarity=0.017  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      ...|.=+++.++.++|+..++++++..++...   ++-.+..+|.+.|+|++.+++-.+-+++
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566888999999999999988776654   4445667889999999988775554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.94  E-value=6.1  Score=38.68  Aligned_cols=110  Identities=12%  Similarity=0.019  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRG  401 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a  401 (442)
                      +.+...|......-...|+++...-+|++++---..+...|...+......|+.+-|-..+.++.+.. +..+..+...+
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a  373 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA  373 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence            45566788888888899999999999999998888888999999998888999999999999888775 55667777778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASL  432 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  432 (442)
                      ..-...|++..|...+++..+-.|+.-.+-.
T Consensus       374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l  404 (577)
T KOG1258|consen  374 RFEESNGNFDDAKVILQRIESEYPGLVEVVL  404 (577)
T ss_pred             HHHHhhccHHHHHHHHHHHHhhCCchhhhHH
Confidence            8888899999999999999988887665543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.81  E-value=3  Score=38.59  Aligned_cols=96  Identities=13%  Similarity=0.011  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY--LESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      .+-+....++...-.|+|++|.+.|+..+. +|+. ...-.+|..+  ..+|..+.|+.+.+++....|.-+=++...-.
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe  196 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE  196 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence            344566678888899999999999987664 3432 2222334332  45789999999999999999987666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~  422 (442)
                      .....|+.+.|++.++...+
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHH
Confidence            67889999999998876554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.71  E-value=4.3  Score=38.66  Aligned_cols=95  Identities=20%  Similarity=0.042  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccH
Q 013459          324 QSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLN---GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       324 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~  394 (442)
                      -++....++|..++ -..+++.|..+++++..+.   |..    ..++..++.+|.+.. .+..+...+++++++...++
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            34555666776665 4678888999999887763   222    356777888888887 78888888899988876553


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHH
Q 013459          395 ----KAYLRRGTAREMLGYYKEAIEDFS  418 (442)
Q Consensus       395 ----~~~~~~a~~~~~~~~~~~A~~~~~  418 (442)
                          +.++.++..+.-..++..|.+.+.
T Consensus       124 ~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  124 YWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence                456778888888888888887743

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.67  E-value=0.85  Score=40.23  Aligned_cols=62  Identities=11%  Similarity=0.046  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  388 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  388 (442)
                      ..+...+..|...|.+.+|+++.++++.++|-+...+..+-..+..+|+--+++++|++.-+
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            45666788999999999999999999999999999999999999999999999999887543

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.66  E-value=0.82  Score=36.14  Aligned_cols=50  Identities=16%  Similarity=0.127  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS  375 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  375 (442)
                      .+.....+...+..|+|+.|.++.+.++..+|++..+...++.++.+++.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999888888877664

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.59  E-value=1.1  Score=43.02  Aligned_cols=106  Identities=12%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          316 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       316 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      .+.+.++|.+...|+.+-+.+-.+ .+++..+.|++.+...|..+.+|.......+..++|+...+.|.|+|..- -+.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHh
Confidence            446788899999999998888777 99999999999999999999999999999999999999999999998642 2355


Q ss_pred             HHHH-HHHHHHHcCCHHHH----HHHHHHHHhh
Q 013459          396 AYLR-RGTAREMLGYYKEA----IEDFSYALVL  423 (442)
Q Consensus       396 ~~~~-~a~~~~~~~~~~~A----~~~~~~~l~~  423 (442)
                      .|.. +..+....++...+    .+.|+-+++.
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k  120 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEK  120 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH
Confidence            5543 34444555554443    3455555554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.46  E-value=4.2  Score=30.80  Aligned_cols=66  Identities=14%  Similarity=0.006  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-------hCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-------LNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      .++.-+-.++..+...|+|++++...++++.       ++.+.    ..+.++++..+..+|+.++|++.|+++-+.
T Consensus        53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3555566788899999999998887777775       34444    346678999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=91.39  E-value=6  Score=35.74  Aligned_cols=56  Identities=11%  Similarity=-0.125  Sum_probs=32.0

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459          365 NRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       365 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~  420 (442)
                      .+++|..++|+..+|++.++.+.+-.|-.  ...+-++-.++.++.-|.+....+-+.
T Consensus       280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY  337 (556)
T KOG3807|consen  280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY  337 (556)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45677777777777777777776665532  234444555555555454444444333

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.90  E-value=3.3  Score=47.05  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc---------
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KK---------  392 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~---------  392 (442)
                      ...++.|.+.|+...+.|+++.|...+-+|.+..  -+.++..+|..+.+.|+-..|+..+++.+..+ |+         
T Consensus      1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred             chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence            5677889999999999999999999999888876  56788999999999999999999999999664 22         


Q ss_pred             -c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          393 -N------VKAYLRRGTAREMLGYY--KEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       393 -~------~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                       .      ..+.+.++.-..+.+++  ++-+++|..+.+..|....-+.++++....
T Consensus      1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence             1      12445555555566664  356788999999999877777777755443

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=90.80  E-value=0.19  Score=45.37  Aligned_cols=83  Identities=17%  Similarity=0.017  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ....+.+.+.++.+.+..|+..-..++..++....+++.+++.+..+.++++|+++++.+....|++.+....+...-..
T Consensus       276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            34556888899999999999998888888888899999999999999999999999999999999998776655544444


Q ss_pred             cCC
Q 013459          407 LGY  409 (442)
Q Consensus       407 ~~~  409 (442)
                      ..+
T Consensus       356 ~~~  358 (372)
T KOG0546|consen  356 KKQ  358 (372)
T ss_pred             HHH
Confidence            433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.62  E-value=3.8  Score=34.39  Aligned_cols=73  Identities=14%  Similarity=0.023  Sum_probs=53.1

Q ss_pred             cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHcCCHHHHH
Q 013459          341 QWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYKEAI  414 (442)
Q Consensus       341 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~  414 (442)
                      .=++|...|-++-... =+++...+.+|..|. ..+.++++..+-+++++...    |++.+..++.++.++++++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3345666555443321 246778888887664 77889999999999988643    4888999999999999998874

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.26  E-value=10  Score=34.32  Aligned_cols=85  Identities=22%  Similarity=0.087  Sum_probs=67.6

Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC--------
Q 013459          341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG--------  408 (442)
Q Consensus       341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~--------  408 (442)
                      +...|...|.++....  +..+.+.+|.+|..    ..++++|+.+|+++.+...  ..+++.++ ++...|        
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~  244 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF  244 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence            3357889999988776  78889999988865    3489999999999999876  88899999 666666        


Q ss_pred             -------CHHHHHHHHHHHHhhCCCChHH
Q 013459          409 -------YYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       409 -------~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                             +...|...+.++....+.....
T Consensus       245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  273 (292)
T COG0790         245 LTAAKEEDKKQALEWLQKACELGFDNACE  273 (292)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence                   7778888888888776655443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.18  E-value=3.6  Score=36.34  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK------NVKAYLRRGTAREMLGYYKEAIEDFSYAL  421 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  421 (442)
                      ....+|.-|++.|+|++|++.|+++....-.      ....+..+-.|+..+|+.++.+...-+++
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            4456788888888888888888888654321      24466667778888888877776654443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.04  E-value=2.1  Score=43.47  Aligned_cols=64  Identities=22%  Similarity=0.098  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCc----------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459          360 ATYYSNRAAAYLESGSFLQAEADCTKA----------INLDKK----------NVKAYLRRGTAREMLGYYKEAIEDFSY  419 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~  419 (442)
                      ...|++.+..+...++.+.|+++|+++          ++-+|.          +...|...|.-+...|+++.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            357888899899999999999999974          333342          345666788889999999999999988


Q ss_pred             HHhh
Q 013459          420 ALVL  423 (442)
Q Consensus       420 ~l~~  423 (442)
                      +-..
T Consensus       938 A~D~  941 (1416)
T KOG3617|consen  938 AKDY  941 (1416)
T ss_pred             hhhh
Confidence            7654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.90  E-value=8  Score=36.04  Aligned_cols=97  Identities=19%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------C-cc
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD-------K-KN  393 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p-~~  393 (442)
                      .-..+..+|..|...|+++.|++.|.++-...-.   ....+.+.-.+....++|.....+-.++.+.-       + -.
T Consensus       149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            3467889999999999999999999996554332   24667788888888999998888888877651       0 11


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013459          394 VKAYLRRGTAREMLGYYKEAIEDFSYAL  421 (442)
Q Consensus       394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l  421 (442)
                      .......|.+...+++|+.|.++|-.+.
T Consensus       229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  229 AKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2344556777888889999999887654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.89  E-value=12  Score=35.08  Aligned_cols=112  Identities=13%  Similarity=0.055  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhcccH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHhcCCccH
Q 013459          328 IAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLES------------GSFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~~l~~~p~~~  394 (442)
                      ..+.+-....+.+.| .+++++-.+.++.+|+...+|+.+=.++...            ...++-+.....+++.+|+.-
T Consensus        30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY  109 (421)
T KOG0529|consen   30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY  109 (421)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence            334444445556666 4577777888888998877776554333222            235566677788899999999


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          395 KAYLRRGTAREMLGY--YKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      -+|+.+..++.+...  +..-++.++++++.+|.|-.+|.+...+-.
T Consensus       110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~  156 (421)
T KOG0529|consen  110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE  156 (421)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence            999999999987774  688899999999999999999988776654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.65  E-value=12  Score=31.90  Aligned_cols=64  Identities=16%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459          331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  394 (442)
                      .....+++.++.++|+...+.-++-+|.+......+-.++.-.|+|++|...++-+-.+.|++.
T Consensus         6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3455678889999999999999999999998888889999999999999999999988888763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.56  E-value=7.1  Score=32.40  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      ..++..+|..|.+.|++++|++.|.++....-.   ..+.++++-.+....+++.....++.++-.+-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            467889999999999999999999998876432   356778888889999999999999988876643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.47  E-value=4.4  Score=39.55  Aligned_cols=90  Identities=20%  Similarity=0.052  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhhCCCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 013459          345 AISFYTEAIKLNGNNATYYSN--RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY-AL  421 (442)
Q Consensus       345 A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l  421 (442)
                      ++..+...+.+++.++..+..  +...+...++...+....+.++..+|++..+..+++.++...|....+...+.+ +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            566666677788888776443  478888889999999999999999999999999999998887777666666555 89


Q ss_pred             hhCCCChHHHHHH
Q 013459          422 VLEPTNKRASLSA  434 (442)
Q Consensus       422 ~~~p~~~~~~~~l  434 (442)
                      ...|++.+....+
T Consensus       130 ~~~~~~~~~~~~~  142 (620)
T COG3914         130 WLSPDNAEFLGHL  142 (620)
T ss_pred             hcCcchHHHHhhH
Confidence            9999999887777

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=89.10  E-value=4.9  Score=38.85  Aligned_cols=74  Identities=14%  Similarity=0.040  Sum_probs=65.7

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          350 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       350 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      ++-++.+|.+..+|+.+-.-+..+ -+++....|++.+...|..+.+|..........++|+.-.+.|.+|+..-
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv   83 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV   83 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            667889999999999988866444 99999999999999999999999999999999999999999999998643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=89.00  E-value=2.6  Score=40.48  Aligned_cols=73  Identities=14%  Similarity=-0.032  Sum_probs=62.4

Q ss_pred             cchHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459          321 NQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      ..|.....+.+++..+++.   |+.-.|+.....+++++|....+++.++.++.+++++.+|+.+...+....|.+
T Consensus       403 ~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  403 YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            3356667777888888775   477778899999999999999999999999999999999999998888888844

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.00  E-value=1.8  Score=36.31  Aligned_cols=57  Identities=19%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEA  381 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~  381 (442)
                      +.++..+.+|..|. ..+-+.++.++.+++++...    +++.+..++.++.+++++++|--
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence            45667777777766 77899999999999998554    48999999999999999999853

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.91  E-value=7  Score=34.51  Aligned_cols=64  Identities=8%  Similarity=0.031  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l  387 (442)
                      .......++|..|++.|+|++|+++|+.+.......      ......+..|+.++|+.+..+...-+++
T Consensus       176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345667799999999999999999999997664432      4567778899999999999888876654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.83  E-value=3.1  Score=28.68  Aligned_cols=31  Identities=26%  Similarity=0.187  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  355 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  355 (442)
                      .+..+...|..+=+.|++++|+.+|+++++.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4555666777777777777777776666543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=88.82  E-value=1.5  Score=46.80  Aligned_cols=103  Identities=14%  Similarity=0.052  Sum_probs=83.1

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---  390 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---  390 (442)
                      +|+.+..+..++..+.+.+++++|+..-.++.-+        .|+....|.+++...+..++...|++.+.+++.+.   
T Consensus       969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen  969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred             chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence            4777888999999999999999999987766543        34556788899999999999999999998887652   


Q ss_pred             -----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          391 -----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       391 -----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                           |.-.....+++.++...++++.|+++++.|+...
T Consensus      1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                 3333455677888888899999999999998753

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.82  E-value=5.9  Score=39.13  Aligned_cols=72  Identities=11%  Similarity=-0.001  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      .+-+-+.-+++.++|..++++|...++.-|.+      .+....++.||.++.+.+.|.+++++|-+.+|.++-.+..
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            34455777889999999999999998876644      4566778999999999999999999999999988765443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.79  E-value=30  Score=35.29  Aligned_cols=109  Identities=16%  Similarity=0.058  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhhCCC--CH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---
Q 013459          323 KQSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGN--NA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK---  392 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~--~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---  392 (442)
                      ..++...+++|..++ ...++++|..+++|++.+...  ..    .+.+.++.++.+.+... |.+.+++.++....   
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            457888999999998 788999999999999887643  22    33456678887777666 99999999877544   


Q ss_pred             -cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCChHHHH
Q 013459          393 -NVKAYLRRG--TAREMLGYYKEAIEDFSYALVLE--PTNKRASL  432 (442)
Q Consensus       393 -~~~~~~~~a--~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~  432 (442)
                       .....+.+-  ..+...+++..|.+.+++.....  ..++.+..
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v  179 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV  179 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence             222223332  22223479999999999988876  34444433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=88.39  E-value=8.4  Score=38.17  Aligned_cols=58  Identities=14%  Similarity=0.046  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT  384 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~  384 (442)
                      .+...+..|..+-.-++.++|-.+|++.+..+|+  ..++..+.-+.+.|-...|...+.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   98 (578)
T PRK15490         41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK   98 (578)
T ss_pred             hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence            3344444455555555555555555555555444  334444444444444444444433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=88.12  E-value=9  Score=39.46  Aligned_cols=100  Identities=15%  Similarity=0.063  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--  393 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--  393 (442)
                      .+......+..+..+.+|.+|..+..++...-+.         .....-.++.+....+++++|++..+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            3444556688888899999999998888765443         13444557888899999999999999999887765  


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                         ..++...|.+..-.|++++|..+.+.+.+..
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence               3467778999999999999999988887763

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.97  E-value=2.1  Score=23.41  Aligned_cols=29  Identities=17%  Similarity=0.052  Sum_probs=15.6

Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          409 YYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       409 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      +.+.+...|++++...|.+...|......
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            44555555555555555555555544433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.94  E-value=16  Score=34.67  Aligned_cols=20  Identities=35%  Similarity=0.504  Sum_probs=15.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhh
Q 013459          404 REMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~  423 (442)
                      -...|+|++|+..+=+++++
T Consensus       251 Ra~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  251 RAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHhcCCHHHHHHHHHHHHHH
Confidence            34578899998887777765

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.77  E-value=4.1  Score=34.54  Aligned_cols=66  Identities=12%  Similarity=0.102  Sum_probs=57.7

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      -+.+.++..+|++..+.-++-+|.+......+-++|.-.|++++|...++-+-++.|+.......+
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ly   75 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLY   75 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence            456788999999999999999999998888888999999999999999999999999876544333

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.24  E-value=19  Score=34.51  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=73.5

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH
Q 013459          333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE  412 (442)
Q Consensus       333 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~  412 (442)
                      -...+..|+...|.+-+..++...|.++.....++.++.++|+|+++.+.+..+-..-..-..+...+-..+..+++.++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            34556789999999999999999999999999999999999999999998876654433334455555566778888888


Q ss_pred             HHHHHHHHHhhCCCCh
Q 013459          413 AIEDFSYALVLEPTNK  428 (442)
Q Consensus       413 A~~~~~~~l~~~p~~~  428 (442)
                      |...-+-.+.-.-+++
T Consensus       376 a~s~a~~~l~~eie~~  391 (831)
T PRK15180        376 ALSTAEMMLSNEIEDE  391 (831)
T ss_pred             HHHHHHHHhccccCCh
Confidence            8877766665444433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.04  E-value=1.6  Score=41.18  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=57.0

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          331 EKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       331 ~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .+.+.+.-.|||..|++.++.. +++         +-+...++..|.+|+-+++|.+|++.|...+..-......+....
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~  205 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS  205 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            4556667789999998887643 222         223567788899999999999999999888753211111111111


Q ss_pred             HHHH-HcCCHHHHHHHHHHHHhhCCC
Q 013459          402 TARE-MLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       402 ~~~~-~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      .-+. -.+..++....+--|+.+.|.
T Consensus       206 ~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  206 YQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             chhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            1111 123345555556666777774

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.38  E-value=8  Score=35.11  Aligned_cols=98  Identities=16%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013459          341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFS  418 (442)
Q Consensus       341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  418 (442)
                      +|.+-..+|+-.....| ++..-.|++....+..-.+.++...+.+...  -.....++-..|..+.++|+.++|...|+
T Consensus       311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            66666666666655555 4455567777777777778888877776654  22344566667899999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHh
Q 013459          419 YALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       419 ~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +++.+.++..+......++..
T Consensus       390 rAi~La~~~aer~~l~~r~~~  410 (415)
T COG4941         390 RAIALARNAAERAFLRQRLDR  410 (415)
T ss_pred             HHHHhcCChHHHHHHHHHHHH
Confidence            999999998887776666554

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.15  E-value=3.7  Score=22.32  Aligned_cols=26  Identities=12%  Similarity=0.137  Sum_probs=12.3

Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013459          341 QWLKAISFYTEAIKLNGNNATYYSNR  366 (442)
Q Consensus       341 ~~~~A~~~~~~al~~~p~~~~~~~~~  366 (442)
                      +++.+...|++++...|.+...|...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34444455555555555444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=81.91  E-value=12  Score=29.16  Aligned_cols=56  Identities=18%  Similarity=0.074  Sum_probs=38.9

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      ...+.++-++-.+.+..+.+.+..+++.++.+|.+|.++|+..+|.+.+.+|-+..
T Consensus        95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            44566777777777777776666789999999999999999999999999887643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.85  E-value=10  Score=35.73  Aligned_cols=96  Identities=19%  Similarity=0.148  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHH
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKL-----------NGNNATYYSNRAAAYLESGSF----------LQAEADCTKA  386 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~  386 (442)
                      -++..|+.+++...|++|+.++-.|=+.           -.+++-.-...-+||+.+++.          ..|.+.|.++
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3455566666666677766665444332           223333444556788887753          2333333332


Q ss_pred             H--------hcC-CccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          387 I--------NLD-KKNV------KAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       387 l--------~~~-p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      .        .+. +..+      ..+...|.+.+.+|+.++|.++++.+...
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~  296 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK  296 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            2        111 2222      23444688999999999999999887654

>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function

Probab=81.77  E-value=26  Score=28.33  Aligned_cols=111  Identities=13%  Similarity=0.039  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCCcc----HHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGS----FLQAEADCTKAINLDKKN----VKA  396 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~----~~~A~~~~~~~l~~~p~~----~~~  396 (442)
                      -+..+.-..-...++|.||.+++.+.++...  +...+|.+++.|.+-..+    ++.-.+.-+.+..-+..+    ..+
T Consensus        94 iA~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatA  173 (220)
T PF10858_consen   94 IAALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATA  173 (220)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHH
Confidence            3455555666788999999999999998743  345788888888877654    333333333322222222    234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      -...+..-.+.|.-.+|++.++..+..+..+.....+...+
T Consensus       174 tI~kaiwdik~nm~~~aeknL~~l~~Snn~SdllKdQAKaL  214 (220)
T PF10858_consen  174 TIIKAIWDIKNNMKNQAEKNLKNLLASNNVSDLLKDQAKAL  214 (220)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            44456666788889999999999988776555555444444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=81.72  E-value=8.5  Score=36.41  Aligned_cols=33  Identities=9%  Similarity=0.029  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  355 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  355 (442)
                      +-....++..|-+|+..++|.+|++.|..++..
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567899999999999999999999998753

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.67  E-value=5.6  Score=31.48  Aligned_cols=53  Identities=30%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH
Q 013459          360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE  412 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~  412 (442)
                      .+.....+.-.+..|++.-|...++.++..+|+|.++...++.+|.+++...+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            45566678888899999999999999999999999999999999998886544

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.50  E-value=8.8  Score=32.32  Aligned_cols=49  Identities=20%  Similarity=0.114  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       377 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      +..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|.
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            344445555565555 4556666677777777777777777777777763

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=81.47  E-value=34  Score=30.47  Aligned_cols=94  Identities=11%  Similarity=-0.078  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcC
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGS--------FLQAEADCTKAINLD  390 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~  390 (442)
                      +-.+.++.=+..+++.+++.-|.++..-.++.     .+.+.....++..+......        .+.|+++- +.-...
T Consensus         8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~   86 (260)
T PF04190_consen    8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYK   86 (260)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-T
T ss_pred             HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCC
Confidence            44566777777788888887776665544443     23344444556665555442        23444443 111112


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013459          391 KKNVKAYLRRGTAREMLGYYKEAIEDFS  418 (442)
Q Consensus       391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~  418 (442)
                      -.+++.+..+|..|.+.+++.+|..+|-
T Consensus        87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   87 FGDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            2457888888999999999988887763

; PDB: 3LKU_E 2WPV_G.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.28  E-value=7.6  Score=37.54  Aligned_cols=82  Identities=20%  Similarity=0.149  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      +...|.++|...+++|+++-|.++|+++-.        +..+..+|...|+-+.-.+..+.+......+..     -.++
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~a-----f~~~  412 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIA-----FQAA  412 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHH-----HHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHH-----HHHH
Confidence            445777788888888888888777776532        345566677777766555555555443332211     1344


Q ss_pred             HHcCCHHHHHHHHHH
Q 013459          405 EMLGYYKEAIEDFSY  419 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~  419 (442)
                      ..+|++++..+.+.+
T Consensus       413 ~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  413 LLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHT-HHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            556666666665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.81  E-value=26  Score=33.96  Aligned_cols=86  Identities=16%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhcccHHHHHHH-------HHHHHhh-----------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          329 AKEKGNQAYKDKQWLKAISF-------YTEAIKL-----------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~-------~~~al~~-----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      ....+..+.++|.++.|+..       |+-|+++           .-++...|..+|...+..|+++-|+++|+++-..+
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~  377 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS  377 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc
Confidence            44556666666666666654       3333332           23456677777777777777777777777653221


Q ss_pred             --------CccHHHHHHHHHHHHHcCCHHHHH
Q 013459          391 --------KKNVKAYLRRGTAREMLGYYKEAI  414 (442)
Q Consensus       391 --------p~~~~~~~~~a~~~~~~~~~~~A~  414 (442)
                              -.+.+.+..++......|++.-|.
T Consensus       378 ~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af  409 (443)
T PF04053_consen  378 GLLLLYSSTGDREKLSKLAKIAEERGDINIAF  409 (443)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred             ccHHHHHHhCCHHHHHHHHHHHHHccCHHHHH
Confidence                    233444445555555555554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.70  E-value=34  Score=33.39  Aligned_cols=65  Identities=15%  Similarity=-0.058  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC---C----ccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLD---K----KNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p----~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~  427 (442)
                      +..+|.++..+|+...|..+|..+++..   -    -.+-++|.+|..|..++. ..++.+++.+|-+...+.
T Consensus       452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            4567999999999999999999887331   1    126799999999999999 999999999998877553

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=80.16  E-value=5.8  Score=34.25  Aligned_cols=103  Identities=14%  Similarity=0.015  Sum_probs=57.1

Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHhcCH-HHH-HHHHHHHHh-cC-CccHHHH--H
Q 013459          337 YKDKQWLKAISFYTEAIKLNGNNAT------------YYSNRAAAYLESGSF-LQA-EADCTKAIN-LD-KKNVKAY--L  398 (442)
Q Consensus       337 ~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~~~~~~~~~~~~-~~A-~~~~~~~l~-~~-p~~~~~~--~  398 (442)
                      +..|+|+.|++....+|+.+-..++            -...-+......|+. +-. ...+..+.. .+ |+...+-  -
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K  173 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK  173 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            5579999999999999987532211            122223333344431 111 112222221 11 3444333  3


Q ss_pred             HHHHHHH---------HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          399 RRGTARE---------MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       399 ~~a~~~~---------~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ..|..+.         ..++.+.|..+++++++++|+.. ....+.++.+.
T Consensus       174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~  223 (230)
T PHA02537        174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERR  223 (230)
T ss_pred             HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHH
Confidence            3465552         34577899999999999998753 44444555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	442
1wao_1	477	Pp5 Structure Length = 477		1e-17
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-16
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		5e-16
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-14
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		4e-13
2dc0_A	434	Crystal Structure Of Amidase Length = 434		7e-13
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		9e-12
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-11
3a1i_A	521	Crystal Structure Of Rhodococcus Sp. N-771 Amidase		6e-11
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		6e-11
3a1k_A	521	Crystal Structure Of Rhodococcus Sp. N771 Amidase L		8e-11
2df4_A	485	Structure Of Trna-Dependent Amidotransferase Gatcab		2e-10
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-10
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		4e-10
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		4e-10
3h0l_A	478	Structure Of Trna-Dependent Amidotransferase Gatcab		5e-10
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		6e-10
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		6e-10
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		6e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		1e-09
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-09
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		3e-09
3al0_A	475	Crystal Structure Of The Glutamine Transamidosome F		1e-08
3kfu_E	471	Crystal Structure Of The Transamidosome Length = 47		2e-08
2gi3_A	476	Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf		2e-08
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		9e-08
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		9e-08
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		1e-07
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-07
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		1e-06
4gyr_A	621	Granulibacter Bethesdensis Allophanate Hydrolase Ap		1e-06
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
1m21_A	503	Crystal Structure Analysis Of The Peptide Amidase P		2e-06
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		3e-06
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		5e-06
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		6e-06
1obk_A	414	Crystal Structure Of The R158q Mutant Of Malonamida		9e-06
1obi_A	414	Crystal Structure Of The G130a Mutant Of Malonamida		1e-05
1o9n_A	414	Crystal Structure Of The K62a Mutant Of Malonamidas		1e-05
1ock_A	412	The Crystal Structure Of Malonamidase E2 From Brady		1e-05
1obj_A	414	Crystal Structure Of The T150a Mutant Of Malonamida		1e-05
1obl_A	414	Crystal Structure Of The S133a Mutant Of Malonamida		1e-05
1o9o_A	414	Crystal Structure Of The S131a Mutant Of Malonamida		1e-05
1o9q_A	414	Crystal Structure Of The S155c Mutant Of Malonamida		1e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		4e-04
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		4e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
           T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 11  KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
           T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct: 71  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 63/106 (59%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
           SAE  K  GN  YK   + KAI +Y +A++L+ NNA+ + N   AY + G + +A     
Sbjct: 8   SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           KA+ LD  N KA+ RRG A    G Y++AIED+  AL L+P N +A
Sbjct: 68  KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  DC +
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
           AI +D    KAY R G A   L  + EA+  +  AL L+P N+
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 26/276 (9%)
Query: 21  SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80
           SLG DT G +R+P+ F G++GF+PSYG VS  G +P+S S D  G   R  +    +  +
Sbjct: 163 SLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI 222
Query: 81  LL--QLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL-GEY 137
           L    +P    ++P           +  +P D +   +     K F R +     L  E 
Sbjct: 223 LAGESIPLEGVQNP-----------VFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEV 271
Query: 138 FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEIS 197
            +  +P L+G ++         RL+ RYE    H + ++       P +   +   L ++
Sbjct: 272 REVSLP-LEGVYEV------YTRLV-RYEAARIHEKALKEHPEGFSPQVREALLAGLALT 323
Query: 198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN---RAFSL 254
           E    +  + R  +R  +   L+    L+ P    P P LG +E+  E  +     AF  
Sbjct: 324 EKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFIT 383
Query: 255 LSIA-SVSGCCQVTVPLGYYDKCPTSVSFIARHGGD 289
           L++  S+ G   + +P    +  P  +  +  +G D
Sbjct: 384 LTLPFSLLGVPTLALPFAKVEGXPVGLQVVGAYGED 419

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  DC +
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
            I L+   +K Y R+  A E +  Y +A++ +  AL L+ + K A   AD  ++  M
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA---ADGYQRCMM 129

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 56/106 (52%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
           SAE     GN  YK   + +AI +Y +A++L+ NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           KA+ LD  N +A+   G A    G Y EAIE +  AL L+P N  A
Sbjct: 68  KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 54/319 (16%)
Query: 18  VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 77
           VDF++G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V
Sbjct: 184 VDFAIGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTV 237
Query: 78  GHVLLQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHE 132
               L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E
Sbjct: 238 HDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE 294
Query: 133 NLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKP 180
            + +   +   SL     T  E+ N+   +  +   N            + N +  + + 
Sbjct: 295 -VDDAVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEG 352
Query: 181 ALDPDISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISS 217
             DP++ A      I     +SETV                      +++    R+A  +
Sbjct: 353 LYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDT 412
Query: 218 LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYD 274
            L+   +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +
Sbjct: 413 ALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN 472
Query: 275 KCPTSVSFIARHGGDRFLL 293
             P  +    RH  D  +L
Sbjct: 473 GLPVGMMITGRHFDDATVL 491

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEA 381
           S E  +++GN+ +K   +  A++ YT+A+ L+    + A  + NRAA +L+   + +AE 
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
           + +KAI  D  +VKA  RR  A E LG   +A+ D    + LEP NK
Sbjct: 87  EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 54/319 (16%)
Query: 18  VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 77
           VDF++G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V
Sbjct: 184 VDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTV 237
Query: 78  GHVLLQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHE 132
               L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E
Sbjct: 238 HDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE 294
Query: 133 NLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKP 180
            + +   +   SL     T  E+ N+   +  +   N            + N +  + + 
Sbjct: 295 -VDDAVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEG 352
Query: 181 ALDPDISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISS 217
             DP++ A      I     +SETV                      +++    R+A  +
Sbjct: 353 LYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDT 412
Query: 218 LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYD 274
            L+   +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +
Sbjct: 413 ALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN 472
Query: 275 KCPTSVSFIARHGGDRFLL 293
             P  +    RH  D  +L
Sbjct: 473 GLPVGMMITGRHFDDATVL 491

>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 72
           LV  SLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct: 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 292 LLDTVQNMYASLQEQ--ADIATK--------SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 341
           L  T++    SL E   ADI TK         K     +   + AE A+ +G + +    
Sbjct: 95  LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154
Query: 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401
           W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC KAI  D   V+AY+R+ 
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214
Query: 402 TAREMLGYYKEAIE 415
           TA+  +  Y  A+E
Sbjct: 215 TAQIAVKEYASALE 228

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  DC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            I LD K +K Y+R+      +  + +A   +  AL ++P+N+ A
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
           AI  D   V+AY+R+ TA+  +  Y  A+E
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALE 93

>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 21  SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 69
           SLG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F R
Sbjct: 163 SLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGR 211

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
           +A+ LD ++VKA+   G  +  +  Y EAI +   A  L
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 306 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 364
           + DIA    LS +   Q+Q+  +  K +GN  +  K + +AI +Y  AI+L+ N   +YS
Sbjct: 7   EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
           N +A Y+ +G   +     TKA+ +   + KA LRR +A E LG + +A+ D S
Sbjct: 64  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 306 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 364
           + DIA    LS +   Q+Q+  +  K +GN  +  K + +AI +Y  AI+L+ N   +YS
Sbjct: 3   EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 59
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
           N +A Y+ +G   +     TKA+ +   + KA LRR +A E LG + +A+ D S
Sbjct: 60  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 113

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
           +A+ LD ++VKA+   G  +  +  Y EAI +   A  L
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 52/98 (53%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D  K ++L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
                K Y R+  A E L  ++EA   +   L  E  N
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (52%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   +A  D   A  +
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
           D K  KA+ R G AR  +  YK A E +   +  E
Sbjct: 75  DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKI 73
           +V  +LG DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  I
Sbjct: 153 MVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAI 212
Query: 74  LRHV 77
           L  +
Sbjct: 213 LMEI 216

>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 25  DTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 69
           DT G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR
Sbjct: 161 DTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMAR 205

>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 22  LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 77
           LG DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  IL  +
Sbjct: 159 LGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEI 217

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           K+KGNQ +++K++  AI +Y  A++L   +  +YSN +A Y+  G   +     TKA+ L
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
                K  LRR +A E LG + +A+ D S
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAMFDLS 97

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 390 DKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
            ++N        KAY R G +      YK+AI  ++ +L    T
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 390 DKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
            ++N        KAY R G +      YK+AI  ++ +L    T
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 53/106 (50%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
           SAE     GN  YK   + +AI +Y +A++L  NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           KA+ L   N +A+   G A    G Y EAIE +  AL L P N  A
Sbjct: 68  KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           KE GN AYK K +  A+  Y +A +L+  N TY  N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 390 DKKNVK-------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
            ++N +       AY R G +      YK+AI  ++ +L    T K
Sbjct: 68  GRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPK 113

>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 20  FSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 68
           FSLG DT G  RVP+AF  ++G +P+ G +S  G++P   SLD V  FA
Sbjct: 192 FSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFA 240

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +SAE     GN  YK   + +AI +Y +A++L+  +A  + N   AY + G + +A    
Sbjct: 33  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            KA+ LD ++ +A+   G A    G Y EAIE +  AL L+P
Sbjct: 93  QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 16  DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 69
           +L   ++G +T G +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR
Sbjct: 176 NLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMAR 229

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F +    C KA+ +
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 390 DKKN-------VKAYLRRGTA 403
            ++         KA  R G A
Sbjct: 72  GRETRADYKLIAKAMSRAGNA 92

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 300 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 353
           +   +E  ++ TK KL        + A I KEKG   +K  ++++A+  Y + +      
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 354 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
                K +  + ++    + N A  YL+   + +A   C KA+ LD  N K   RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
            ++  ++ A  DF   L + P NK A L     +K
Sbjct: 362 LLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 300 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 353
           +   +E  ++ TK KL        + A I KEKG   +K  ++++A+  Y + +      
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME 301
Query: 354 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
                K +  + ++    + N A  YL+   + +A   C KA+ LD  N K   RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 405 EMLGYYKEAIEDFSYALVLEPTNKRASL 432
            ++  ++ A  DF   L + P NK A L
Sbjct: 362 LLMNEFESAKGDFEKVLEVNPQNKAARL 389

>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F           R +  +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F                +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F           R +  +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F           R +  +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F           R +  +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F           R +  +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F           R +  +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17  LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
           ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R
Sbjct: 143 MIPLALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76  HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
            +  +  +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +  
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
            E + E +    P ++ F           R +  +EF  +H+E    + P L   + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
           G    ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +  
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
            NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
           GN+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 417 FSYALVLEPTNKRA 430
           +  AL L+P N  A
Sbjct: 66  YQKALELDPNNAEA 79

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 311 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT---------------EAIKL 355
            K     N+  + + + I KE+G   +K+ ++ +A+  Y                EA K 
Sbjct: 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
Query: 356 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
                  + N A  +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  
Sbjct: 192 QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 416 DFSYALVLEPTNKRA 430
           DF   L L P NK A
Sbjct: 252 DFQKVLQLYPNNKAA 266

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEA------------------IKLNGNNATYYSN 365
           +S E  ++KGN+ +  K + +AI  Y +A                  ++L+  N   Y+N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            +  YL  G   +AE   ++ +  ++ N KA  RR  AR       EA ED    L   P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	9e-50
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-49
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-42
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-38
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-36
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	3e-33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	5e-33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-24
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-33
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-31
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-30
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-30
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-29
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	3e-26
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	3e-04
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	4e-25
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	2e-24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-24
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	4e-22
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	2e-21
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	3e-21
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	3e-21
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	3e-21
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-21
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-20
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-19
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-19
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-19
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-11
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-05
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	4e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-15
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	7e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-11
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-06
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	8e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  166 bits (421), Expect = 9e-50
 Identities = 44/119 (36%), Positives = 68/119 (57%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
             + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  
Sbjct: 9   ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
           D T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct: 69  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  163 bits (416), Expect = 2e-49
 Identities = 40/117 (34%), Positives = 61/117 (52%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
              A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  D
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72

Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
           C + I L+   +K Y R+  A E +  Y +A++ +  AL L+ + K A+    R   
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  162 bits (411), Expect = 7e-49
 Identities = 36/117 (30%), Positives = 58/117 (49%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
            + A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  D
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
           C   I LD K +K Y+R+      +  + +A   +  AL ++P+N+ A        +
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  160 bits (408), Expect = 2e-48
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
             AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC
Sbjct: 2   MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLRK 439
            KAI  D   V+AY+R+ TA+  +  Y  A+E    A   +    N  ++   D+L  
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  160 bits (407), Expect = 2e-48
 Identities = 37/116 (31%), Positives = 55/116 (47%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +     KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
            K ++L     K Y R+  A E L  ++EA   +   L  E  N +       +  
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  160 bits (408), Expect = 2e-48
 Identities = 37/112 (33%), Positives = 58/112 (51%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
            +  SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA 
Sbjct: 4   MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63

Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
           ADC +A+ LD ++VKA+   G  +  +  Y EAI +   A  L    +    
Sbjct: 64  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 115

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  159 bits (403), Expect = 2e-47
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNA 360
                    +           S E  +++GN+ +K   +  A++ YT+A+ L+    + A
Sbjct: 6   SGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA 65

Query: 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
             + NRAA +L+   + +AE + +KAI  D  +VKA  RR  A E LG   +A+ D    
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125

Query: 421 LVLEPTNKRASLSADRLRK 439
           + LEP NK    +   +  
Sbjct: 126 VSLEPKNKVFQEALRNISG 144

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  158 bits (402), Expect = 2e-47
 Identities = 43/109 (39%), Positives = 61/109 (55%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
               AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           DC +AI +D    KAY R G A   L  + EA+  +  AL L+P N+  
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  156 bits (397), Expect = 3e-46
 Identities = 38/115 (33%), Positives = 55/115 (47%)

Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 377
            +      ++  K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
           +A  D   A  +D K  KA+ R G AR  +  YK A E +   +  E      ++
Sbjct: 63  KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  153 bits (389), Expect = 7e-44
 Identities = 37/108 (34%), Positives = 57/108 (52%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
            SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431
            +A+ LD ++VKA+   G  +  +  Y EAI +   A  L    +   
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  143 bits (363), Expect = 9e-42
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 384 TKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
            KAI + ++N        KAY R G +      YK+AI  ++ +L    T  
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  142 bits (360), Expect = 2e-41
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
              +A   K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F +   
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 382 DCTKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
            C KA+ + ++         KA  R G A +       A++ F  +L      +
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  132 bits (335), Expect = 6e-38
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
              E  KE+GN  +K   + +A+  Y + I     N   YSN+A A ++ G + QA   C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV-LEPTNKRA 430
            + +          +R       L   + A+      +V ++   +  
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGY 108

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  131 bits (331), Expect = 1e-36
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI------------------KLNGNNATYYSN 365
           +S E  ++KGN+ +  K + +AI  Y +A+                  +L+  N   Y+N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            +  YL  G   +AE   ++ +  ++ N KA  RR  AR       EA ED    L   P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 426 TNKRA 430
                
Sbjct: 129 AAASV 133

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score =  128 bits (324), Expect = 3e-33
 Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 27/298 (9%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGG+SSG+A AV A ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +L
Sbjct: 128 PGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWAL 187

Query: 62  DTVGWFARDPKILRHVGHVL----LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVI 117
           DTVG F    + L      +            ++PR  ++  +    ++  A++ +Q  I
Sbjct: 188 DTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAI 247

Query: 118 KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES 177
           K+ E+  G  V   + L E                     +  +IQ +E           
Sbjct: 248 KAAERA-GASVQAID-LPEAVHEAWR--------------IHPIIQDFEAHRALAWEFSE 291

Query: 178 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKL 237
               + P + A +   + ++    +  + I    R  +  + +   +L+T +     P  
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351

Query: 238 GGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
                  +   NR ++L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 352 AL-ASTGDPRYNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  122 bits (308), Expect = 5e-33
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRA 367
           QSA   KE+GN+ +K  +  +AI  Y EA+                K      +   N A
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
             Y ++  + +A    +K + +DK NVKA  + G A    G+ +EA E+   A  L P N
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155

Query: 428 KRASLSADRLRK 439
                S +    
Sbjct: 156 LDIRNSYELCVN 167

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  123 bits (312), Expect = 8e-33
 Identities = 39/105 (37%), Positives = 54/105 (51%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           AI  D   V+AY+R+ TA+  +  Y  A+E    A   +      
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  101 bits (253), Expect = 2e-24
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           A+  K +GN+ YK +Q+ +AI  Y +A +L+  + TY +NRAAA  E G +  A +    
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63

Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           A+   ++    Y     +   +G     + D    +     +   
Sbjct: 64  AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 20/99 (20%), Positives = 33/99 (33%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
             +   K +   K +        +N   A         Y     +  A    T+ I    
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           ++ + Y  R  A   L  + EAI D + A+  +P   RA
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           +    Y+  ++  AIS   +A++        Y   + ++   G+      D  K I   +
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           K++  + R       L   ++ ++       + P     
Sbjct: 104 KSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEE 141

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 7/99 (7%), Positives = 27/99 (27%), Gaps = 1/99 (1%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                 +       +    + I+    + T +   A    +  +  +          ++ 
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +  +     G        +  A++ ++  +   P + R 
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 336 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394
           A      + +AI+   +AI+ + N    Y  +A A +    +  A      A   D +  
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241

Query: 395 KAYLRRGTAREMLGYYK 411
                R   +      +
Sbjct: 242 NGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
           + A         + ++  F +A     KA  L  K++     R  A    G Y+ AI   
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTL 61

Query: 418 SYALVLEPTNKRA 430
           + A+      +  
Sbjct: 62  NDAVEQGREMRAD 74

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  128 bits (323), Expect = 9e-33
 Identities = 44/120 (36%), Positives = 68/120 (56%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
            + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62

Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
            T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+  
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  124 bits (314), Expect = 1e-31
 Identities = 32/117 (27%), Positives = 44/117 (37%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
              E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D 
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
           TK I L      A L+RG      G   EA +DF   L   P+      +  +L K 
Sbjct: 84  TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  106 bits (266), Expect = 3e-25
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 373
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308

Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              ++A   C++ + ++  NV A   R  A  +   Y EAI+D+  A      +++ 
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 96.3 bits (240), Expect = 9e-22
 Identities = 22/119 (18%), Positives = 53/119 (44%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
           D   A  L   N +A+ +  T    LG ++ ++ +    L L+  +KR      +++K+
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 78.2 bits (193), Expect = 9e-16
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 384 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIEDFSYALVLEPTNKRAS 431
            + + LD+ + + +      +++             G Y +A   +   +  EP+    +
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

Query: 432 LSADRLR 438
           + +    
Sbjct: 295 VRSKERI 301

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 16/97 (16%), Positives = 39/97 (40%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
            + +       A+ +L   ++        +      +
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 376
           +G+   K  +  +A   + + +K N +                     ++A     SG +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             A A   K + +   + +    R       G  ++AI D   A  L+  N  A
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 18/113 (15%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
            +    K++      ++ + +AI  Y  A + N N+         A        + +   
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386

Query: 384 TKAINLDKKN---VKAYLR---------------RGTAREMLGYYKEAIEDFS 418
              +  + K    +KAY +               +  A +       A E  S
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  118 bits (299), Expect = 4e-30
 Identities = 32/115 (27%), Positives = 45/115 (39%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
            E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D TK
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
            I L      A L+RG      G   EA +DF   L   P+ +    +  +L K 
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  107 bits (269), Expect = 4e-26
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 373
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285

Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              ++A   C++ + ++  NV A   R  A  +   Y EAI+D+  A      +++ 
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 95.4 bits (238), Expect = 8e-22
 Identities = 21/109 (19%), Positives = 48/109 (44%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           D   A  L   N +A+ +  T    LG ++ ++ +    L L+  +KR 
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 384 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIEDFSYALVLEPTNKRAS 431
            + + LD+ + + +      +++             G Y +A   +   +  EP+    +
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271

Query: 432 LSA 434
           + +
Sbjct: 272 VRS 274

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR---------------AAAYLESGSF 376
           +G+   K  +  +A   + + +K N +                       A    +   +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             A     K + +   + +    R       G  ++AI D   A  L+  N  A
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
           +   +       L +G    A +    A++ D  N  AY RR T    +G  K A+ D +
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 419 YALVLEPTNKRA 430
             + L+     A
Sbjct: 62  KVIALKMDFTAA 73

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 16/81 (19%), Positives = 37/81 (45%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337

Query: 392 KNVKAYLRRGTAREMLGYYKE 412
            + +       A+ +L   ++
Sbjct: 338 NDQQIREGLEKAQRLLKQSQK 358

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  118 bits (296), Expect = 5e-30
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---------------KLNGNNATYYSNR 366
           + + + I KE+G   +K+ ++ +A+  Y + +               K        + N 
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202

Query: 367 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
           A  +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  DF   L L P 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262

Query: 427 NKRASLSADRLRK 439
           NK A       ++
Sbjct: 263 NKAAKTQLAVCQQ 275

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  117 bits (295), Expect = 7e-29
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
           + + A   K+KGNQ +++K++  AI +Y  A++L   +  +YSN +A Y+  G   +   
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVE 60

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS-YALVLEPTNKRASLSADRLRK 439
             TKA+ L     K  LRR +A E LG + +A+ D S  +L  +  +       +R   
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 99.8 bits (249), Expect = 7e-23
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 270 LGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKS-------------KLS 316
            G +    T  ++   +  D+ L++ + N+Y    E  D A +S             K +
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 317 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF 376
            +   +++ A   +  G   +     L A     +AI+L       Y   A    +    
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDS 286

Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +      KA+ LD  N   Y  RG    +L  Y +A +DF  A  L+P N   
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 96.4 bits (240), Expect = 1e-21
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 9/116 (7%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ----- 378
           ++ E+             + KA+  Y  AI+L       Y   A    ++    +     
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 379 ----AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
               A     KA  LD ++ +A +     +       EAI  F  +  L  T +  
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 14/99 (14%), Positives = 33/99 (33%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           +G   +  + + +A   + +A +L+  N   Y   A        F   E   ++A     
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +  +              + +A++ +  A+ LE      
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 9/108 (8%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
               AY++ ++    + ++EA +         +  A    +   F +A      AI L+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 392 KNVKAYLRRGTA---------REMLGYYKEAIEDFSYALVLEPTNKRA 430
           K    Y+                 +  + EA      A  L+P +++A
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 336 AYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394
              D+    +  +++ +A+KL+ NN++ Y +R        ++ QA  D  KA  LD +N+
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338

Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
             Y++          + +    FS A    P  
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLD 390
                       K +   T+A++L  + +     RA+A    G F  A  D +  ++N D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 391 KKN--VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
             +  ++  L R   ++ +   KE   D   A               + ++  +
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 16/131 (12%)

Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---- 373
                KQ    +       +   +     + Y E+ + +       SN      ES    
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208

Query: 374 --------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
                     F +      +   L +K   +    G  + +      A ED   A+ L P
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268

Query: 426 T----NKRASL 432
                   A +
Sbjct: 269 RVNSYIYMALI 279

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
           + +++A +   +A KL+  +       A   L+     +A     ++ +L +   +    
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL-- 486

Query: 400 RGTAREMLGYYKEAIED 416
           +          ++ I  
Sbjct: 487 QAITFAEAAKVQQRIRS 503

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  110 bits (278), Expect = 2e-26
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
            ++  A   K +GN  +  K + +AI +Y  AI+L+ N   +YSN +A Y+ +G   +  
Sbjct: 20  QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79

Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438
              TKA+ +   + KA LRR +A E LG + +A+ D S  L L      AS+     R
Sbjct: 80  EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLER 136

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
           ++ +A      G   +     L A     E+I L+    +Y    A    +  +  +   
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFK 297

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              KA++L+ +    Y  RG    +L  YK A EDF  A  L P N   
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 20/96 (20%), Positives = 37/96 (38%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                   +   +   F+ +A+ LN      Y +R   Y     +  A+ D  KA +L+ 
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
           +NV  Y++        G + E+   F+   +  PT 
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 335 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
           Q Y   + +  A   + +A  LN  N   Y   A    + G F ++EA   +        
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +            G +  AI+ +  A  LE   ++ 
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 18/124 (14%)

Query: 324 QSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA------------- 369
              E+          D+     AI  Y  A +L       +                   
Sbjct: 376 TLPEVPTFFAE-ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434

Query: 370 ---YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
               L+   F  A    TKA  LD ++ +A +     +  +    EAIE F  + +L  T
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494

Query: 427 NKRA 430
               
Sbjct: 495 MDEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                YK  ++ ++ +F+ E            +  A    + G F  A      A  L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 392 KNVKAYLRRGTA----------------REMLGYYKEAIEDFSYALVLEPTNKRA 430
              K ++  G                  +     +  AI+  + A  L+P +++A
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 344 KAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
                  +   L+ +     A    NR   +  + +F +A      AI LD      Y  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                   G  ++ IE  + AL ++P + +A
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKA 95

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 12/153 (7%)

Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQA------YKDKQWLKA 345
           +L+   N  A      +++      +       S        +             +  A
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192

Query: 346 ISFYTEAIKLNGNNATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
            +  ++A++   +        A   L   +  +    +  T    L +    A    G  
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252

Query: 404 REMLGYYKEAIEDFSYALVLEPT----NKRASL 432
             +     +A      ++ L PT       A  
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALT 285

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 377
               +         +      ++++  AI   T+A +L+  +       A   L+     
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479

Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
           +A      +  L +   +    + T        ++ +   
Sbjct: 480 EAIELFEDSAILARTMDEKL--QATTFAEAAKIQKRLRAD 517

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 374 GSFLQAEADCTKAINLDKKNVK----AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
           GS +  E D  +   L     +        RG        + EAI+ + YA+ L+P    
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 430 A 430
            
Sbjct: 61  F 61

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score =  109 bits (275), Expect = 3e-26
 Identities = 36/69 (52%), Positives = 47/69 (68%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           P GSSSG+AVAVAA+L   ++G +T G +  P+A  G++G +P+ G VS  GIIPIS S 
Sbjct: 162 PCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQ 221

Query: 62  DTVGWFARD 70
           DT G  AR 
Sbjct: 222 DTAGPMARS 230

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 225 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIA 284
           LV PTT    P             +      S A+V+G   +TVP+G  D  P  + F+ 
Sbjct: 413 LVAPTTGVAWPIRSEG-------DDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMG 465

Query: 285 RHGGDRFLLDTVQNMYASLQEQA 307
               +  L++      A   EQ 
Sbjct: 466 TAWSEPKLIE-----MAYAYEQR 483

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score =  105 bits (265), Expect = 4e-25
 Identities = 35/70 (50%), Positives = 45/70 (64%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
             GGSS G+AVAVA  +   SLG DT G +R+P+ F G++GF+PSYG VS  G +P+S S
Sbjct: 143 QAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRS 202

Query: 61  LDTVGWFARD 70
            D  G   R 
Sbjct: 203 TDHAGPLTRS 212

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score =  105 bits (263), Expect = 2e-24
 Identities = 30/69 (43%), Positives = 45/69 (65%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
            GGSS G+A  VA   VDF++G D  G +R+P+AFCG++G +P++G V + G  PI  ++
Sbjct: 168 AGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTI 227

Query: 62  DTVGWFARD 70
           D +G   R 
Sbjct: 228 DHLGPITRT 236

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  101 bits (253), Expect = 3e-24
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YS 364
           +  +A+  K  GN  +K+++  +A+  Y  AI   G++  +                 + 
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
           N AA  ++   + +A   C   +  ++KN KA  RRG A+  LG    A +DF  A    
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

Query: 425 PTNKRASLSADRLRK 439
           P +K        L +
Sbjct: 295 PDDKAIRRELRALAE 309

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score = 97.3 bits (243), Expect = 4e-22
 Identities = 59/337 (17%), Positives = 105/337 (31%), Gaps = 64/337 (18%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
            GGSS G+  AVAA L   + G D  G VR+P++ CG++G +P+ G +S   ++  S ++
Sbjct: 147 VGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNV 206

Query: 62  D----------TV-----------GWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA-- 98
                      +V           G    D            Q       +P  + +   
Sbjct: 207 AGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQ---GISENPGSLRVGVL 263

Query: 99  -DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKVPSLKGFHKTNGE 154
             +         D       +               LG        +    + F K    
Sbjct: 264 THNPVG--DFALDPECAAAARGAAAAL-------AALGHDVNDAYPEALGDRSFLKD--- 311

Query: 155 LKNVMRLIQRYEFKNNHNEWIESVKPALDPD-ISAEIGEMLE----ISETVIENCKSIRN 209
                  I             E +   L  D +     EM++    ++      C     
Sbjct: 312 ----YSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELR 367

Query: 210 EMRSAISSLLKDDG-ILVTPTTAYPPPKLG--------GKEMLSEDYQNRAFSLL---SI 257
                +    +    +L+ PT     P++G          E     + + +  +L     
Sbjct: 368 YYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVP 427

Query: 258 ASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFLL 293
            +VSG   +++P+G   D  P  V  +A +G +  LL
Sbjct: 428 FNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLL 464

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score = 95.3 bits (238), Expect = 2e-21
 Identities = 38/69 (55%), Positives = 49/69 (71%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A A+AADL   +LG DT G VR P+AFCG+ G +P+YG VS  G+I  ++SL
Sbjct: 138 PGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSL 197

Query: 62  DTVGWFARD 70
           D +G  AR 
Sbjct: 198 DQIGPMARS 206

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score = 94.9 bits (237), Expect = 3e-21
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A AV+A +V  +LG DT G VR P++ CG++G++P+YG VS  G++  ++SL
Sbjct: 139 PGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSL 198

Query: 62  DTVGWFARD 70
           D +G   + 
Sbjct: 199 DQIGPITKT 207

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score = 94.9 bits (237), Expect = 3e-21
 Identities = 36/69 (52%), Positives = 50/69 (72%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A AVAA LV  SLG DT G +R P+A+CG++G +P+YG VS  G++  ++SL
Sbjct: 151 PGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSL 210

Query: 62  DTVGWFARD 70
           D +G   R+
Sbjct: 211 DQIGPLTRN 219

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score = 94.9 bits (237), Expect = 3e-21
 Identities = 33/69 (47%), Positives = 47/69 (68%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
           PGGSS G+A +VA      SLG DT G +R P++FCG++G +P+YG VS  G++  ++SL
Sbjct: 144 PGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSL 203

Query: 62  DTVGWFARD 70
           D +G F R 
Sbjct: 204 DQIGVFGRR 212

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 22/99 (22%), Positives = 31/99 (31%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G    K  Q   AI  Y  A+  +      Y    + +   G+F  A     K I    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            + K +   G A      Y +A   F   L L+P     
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC- 383
           + ++     +  +K+  + +AI  + +      N+   Y+ RA  Y E   +  A+ D  
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 384 --TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                +N  K     +   G      G    AI+ +  A+  + T    
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
            ++  + G+  Y    +  AI +  + I+    +   +     AY  +  +++A++   K
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

Query: 386 AINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRA 430
            + L       YL R  A            A   +   + +       
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISF---YTEAIKLNGNNATYYSNRAAAYLESGSFLQ 378
           +  S  I   +    Y+  ++  A      Y   +      +  +       ++ G    
Sbjct: 33  KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92

Query: 379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           A      A++ D   +  Y + G+     G +  AI+     +    T+ + 
Sbjct: 93  AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 77.3 bits (191), Expect = 4e-16
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAIN 388
            G   Y +K+++KA S + + ++L  N    Y  RA A            A+    K I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 389 LDKKN--------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +            ++A         +     +A   +   L L+PTNK+A
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 338 KDKQWLKAISFYTEAIKLNGNNATY--------YSNRAAAYLESGSFLQAEADCTKAINL 389
            D +   A  +Y + I++                   A  Y  +   ++A+A     + L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 390 DKKNVKAYLRRGTAREMLGYY 410
           D  N KA        E   ++
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 87.5 bits (217), Expect = 7e-21
 Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 12/139 (8%)

Query: 301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 360
            +L     +             + + E     G   Y+  +W  A   +     L+  +A
Sbjct: 5   GTLAMLRGL------------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA 52

Query: 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
            Y+    A     G + QA    +    +D    +           LG    A   F  A
Sbjct: 53  RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112

Query: 421 LVLEPTNKRASLSADRLRK 439
             L          A R   
Sbjct: 113 RALAAAQPAHEALAARAGA 131

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 393
                + +A+  Y+    ++ N   +  + A  +L+ G    AE+    A  L       
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122

Query: 394 VKAYLRRGTAREMLGYYKE 412
                R G   E +   K+
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 89.4 bits (221), Expect = 2e-19
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 15/137 (10%)

Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY--------------- 362
           +T  + + A I KEKG   +K  ++++A+  Y + +                        
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
           + N A  YL+   + +A   C KA+ LD  N K   RRG A+ ++  ++ A  DF   L 
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379

Query: 423 LEPTNKRASLSADRLRK 439
           + P NK A L     +K
Sbjct: 380 VNPQNKAARLQISMCQK 396

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 85.2 bits (211), Expect = 2e-19
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
           N + S+++A E      K++ + KA  FY E ++   NN       A   +  G    A 
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 381 ADCTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRA 430
               K + L+  N+ A +  G          K+ +E     L      + A
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 84.8 bits (210), Expect = 3e-19
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRA 367
           QS +   +K + A +  Q  +A+S++ + I LN +                     +  A
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            AY ++ ++ +A     + +     NV         +   G  K+A+  +   L LE  N
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

Query: 428 KRA 430
             A
Sbjct: 122 LAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLD 390
                    Q   A+  Y + ++L  +N          Y  +     +      K ++  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            K   A  R G ++     Y++A       ++  P+ 
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 88.4 bits (220), Expect = 2e-19
 Identities = 23/107 (21%), Positives = 40/107 (37%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
            +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y E G   +A    
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             A+ L    +  Y+    A    G  + A++ +  AL   P     
Sbjct: 91  RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.9 bits (211), Expect = 3e-18
 Identities = 24/99 (24%), Positives = 38/99 (38%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            GN   +  Q  +AI  Y  A++L  +    Y N AAA + +G    A      A+  + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                    G   + LG  +EA   +  A+  +P    A
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.7 bits (208), Expect = 8e-18
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN   K+ + + +A++ Y  A+ L+ N+A  + N A  Y E G    A     +AI L 
Sbjct: 209 LGN-VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                AY     A +  G   EA + ++ AL L PT+  +
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
             N A K+K    +A   Y  A++L   +A   +N A    E G+  +A     KA+ + 
Sbjct: 277 LAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +   A+    +  +  G  +EA+  +  A+ + PT   A
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 19/100 (19%), Positives = 39/100 (39%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
               +AY   G   +  G  +EAIE + +AL L+P     
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 81.8 bits (203), Expect = 3e-17
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
                Y ++     AI  Y  AI+L  +    Y N A A  E GS  +AE     A+ L 
Sbjct: 243 LAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             +  +       +   G  +EA+  +  AL + P    A
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 20/94 (21%), Positives = 30/94 (31%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                        A+  Y  A++ N +     S+        G   +A+A   KAI    
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
               A+   G      G    AI  F  A+ L+P
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN   K    L +A + Y +AI+   N A  +SN    +   G    A     KA+ LD
Sbjct: 141 LGN-LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
              + AY+  G   +    +  A+  +  AL L P +
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.7 bits (195), Expect = 4e-16
 Identities = 20/96 (20%), Positives = 36/96 (37%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G       +   AI  + +A+ L+ N    Y N      E+  F +A A   +A++L  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            +   +          G    AI+ +  A+ L+P  
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 15/77 (19%), Positives = 30/77 (38%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
             N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 392 KNVKAYLRRGTAREMLG 408
               AY   G   + + 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 11/68 (16%), Positives = 19/68 (27%)

Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
               A    ++G F  AE  C +    +  N    L   +          +    + A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 423 LEPTNKRA 430
             P    A
Sbjct: 62  QNPLLAEA 69

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 84.8 bits (210), Expect = 3e-19
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           +G  A   K W  A+  ++    +   ++    N    Y    +  +AE   T++IN DK
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
               AY +RG        Y  AI+D   AL+    N
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 79.0 bits (195), Expect = 4e-17
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 16/125 (12%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
             + I    G      K   +A   +T +I  + + A  Y  R   Y ++  +  A  D 
Sbjct: 35  PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 94

Query: 384 TKAINLDKKNV----------------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            +A+   + N                 +              +K+A E  + A  ++   
Sbjct: 95  KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154

Query: 428 KRASL 432
           + + +
Sbjct: 155 RHSKI 159

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
           ++   A    N      +   +  A    +   +    + +     G    +L    EA 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAE 57

Query: 415 EDFSYALVLEPTNKRA 430
           + F+ ++  +     A
Sbjct: 58  KAFTRSINRDKHLAVA 73

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 28/110 (25%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAAYLESGS 375
           +G   Y+ +++  AI    EA+  L GN    Y                N A  Y +   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           + +AE     A ++  +   + +             +A+E      + EP
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKID------------KAMECVWKQKLYEP 174

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 85.4 bits (212), Expect = 6e-19
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 298 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
            +  +LQ++  +A   + L++      + A++  E+G           A + +++A+ + 
Sbjct: 14  PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
            +    ++       ++G+F  A       + LD     A+L RG A    G  K A +D
Sbjct: 74  PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133

Query: 417 FSYALVLEPTN 427
                  +P +
Sbjct: 134 LLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----LNGNNATYYSNRAAAYLESGSFLQA 379
            S   ++          Q    ++   + +      +   A     R   Y   G    A
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62

Query: 380 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             D ++A+ +     + +   G      G +  A E F   L L+PT   A
Sbjct: 63  RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 1/114 (0%)

Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
           ++QA    K     +   Q     +    GN   +     +  +  T+   L  + +   
Sbjct: 160 EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETN 218

Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
                 YL  G    A A    A+  +  N   +        +LG  ++ + + 
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 1/99 (1%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G    +   +  A   +   ++L+      + NR  A    G    A+ D       D 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +    L    A + L   K+A E            +  
Sbjct: 143 NDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSDKEQWG 180

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 3/95 (3%)

Query: 336 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRA---AAYLESGSFLQAEADCTKAINLDKK 392
           A +     +A     +  + +      ++          E     + +AD T   +L + 
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
             +     G     LG    A   F  A+     N
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
            G           A + +  A+  N +N   +          G      A+  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 84.1 bits (209), Expect = 9e-19
 Identities = 27/98 (27%), Positives = 38/98 (38%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
             +  +   + KA   +T+AI+ N  +A  Y N A          +A A   KA+ LD  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              AY   G    +   YKEA + F  AL     N   
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 22/99 (22%), Positives = 41/99 (41%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
             N      +  +A++FY +A++L+ + AT Y      Y+    + +A+    KA+    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +N   +   GT    L   K A+     A+ L   +  A
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 81.0 bits (201), Expect = 1e-17
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN  Y  K+   +A   + +A++    N   +       ++      A     +A+ L+
Sbjct: 97  AGN-VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           + + +A  + G      G   EA+  F+     +P +  A
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            G       +Q   A+ +   A++LN N+              G   +A +        D
Sbjct: 131 LGT-VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             +  A+   G         ++A+E    A+ ++P +  A
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL----QAEADCTKAINLDKKNVKAYLR 399
            +   +  +  L    +   S      +  GS      +A    TKAI  +K++   Y+ 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                  +   + A+  +  AL L+ +   A
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATA 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 11/79 (13%), Positives = 28/79 (35%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G     +    +A+S +    + +  +A  + N    Y    +  +A     KAI++  
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 392 KNVKAYLRRGTAREMLGYY 410
            ++ A   +        ++
Sbjct: 225 DHMLALHAKKLLGHHHHHH 243

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRAAA 369
           +E  K  GN  +K + W  AI  YT+ +                KL     +   N  A 
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
            L+   +  A   C +A+ +D  N KA  RR    + L  Y +A+ D   A  + P +K 
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 430 ASLSADRLRK 439
                 ++++
Sbjct: 343 IQAELLKVKQ 352

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 79.0 bits (196), Expect = 3e-18
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           Q+ E    +G   Y    + ++I  + +AI+L+   + Y+  +  A      + +A    
Sbjct: 4   QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63

Query: 384 TKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
              IN+  D+ N   +  +  A   +   +   E       LE  +
Sbjct: 64  NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 17/71 (23%), Positives = 34/71 (47%)

Query: 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
           +   N   Y        ++G++ ++     KAI LD +  K +L +G A   L  Y+EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 415 EDFSYALVLEP 425
           + ++Y + +  
Sbjct: 61  DCYNYVINVIE 71

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 40.9 bits (97), Expect = 9e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +  +N + Y   G  +   G Y E+I+ F  A+ L+P   + 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 56/308 (18%), Positives = 90/308 (29%), Gaps = 41/308 (13%)

Query: 2   PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----I 57
           PGGSS G    + +      LG D  G +R PSAFCGI G +P+   +S  G+       
Sbjct: 208 PGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQ 267

Query: 58  STSLDTVGWFARDPKILRHVGHVLLQ------------LPF--AAQRSPRQIIIA---DD 100
           +    ++G  ARD + L      LL             LPF     RS R + +     D
Sbjct: 268 TAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETD 327

Query: 101 CFELLKIPADRVVQVVIKSTEKLFGRQV-----LKHENLGEYFDSKVPSLKGFHKTNGEL 155
            + +      R +    +  E   G  +            E   +      G        
Sbjct: 328 NYTMPSPAMRRALIETKQRLEAA-GHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNF 386

Query: 156 KN--VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISE--TVIENCKSI--RN 209
           K   V   +           W + +   L   +   +   L      +  +  K      
Sbjct: 387 KGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIE 446

Query: 210 EMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVT 267
             R ++ +  K   +  L+TP                      A S   + +        
Sbjct: 447 MYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRAT------GAVSYTMLYNCLDFPAGV 500

Query: 268 VPLGYYDK 275
           VP+     
Sbjct: 501 VPVTTVTA 508

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 85.2 bits (211), Expect = 5e-18
 Identities = 13/107 (12%), Positives = 27/107 (25%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L  + V A       ++ L   +  +     A  L P    A
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 14/107 (13%), Positives = 29/107 (27%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           Q        G      +   + +    +A  L        ++ +       +  +     
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 13/110 (11%), Positives = 28/110 (25%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433
            +A  L  + V A    G  R  L      +     AL     +   +L+
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 11/99 (11%), Positives = 25/99 (25%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                   +   + +    +A  L        ++         +  +      +A  L  
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           + V A       ++ L   +  +     A  L P    A
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 11/99 (11%), Positives = 25/99 (25%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                   +   + +    +A  L        ++         +  +      +A  L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           + V A       ++ L   +  +     A  L P    A
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 14/107 (13%), Positives = 28/107 (26%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.3 bits (201), Expect = 8e-17
 Identities = 13/107 (12%), Positives = 26/107 (24%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           Q               +   + +    +A  L        ++         +        
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 12/107 (11%), Positives = 26/107 (24%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +               +     +    +A  L        ++         +  +     
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 13/107 (12%), Positives = 28/107 (26%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 11/107 (10%), Positives = 26/107 (24%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +               +   + +    +A  L        ++         +  +     
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L  + V A       ++ L   +  +     A  L P    A
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 3/129 (2%)

Query: 303 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNAT 361
           L+    +A + +      +  Q  +IAK  G  A +    W  A+      + L      
Sbjct: 16  LEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNLTPEQVV 73

Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
             ++         +  +      +A  L  + V A       ++ L   +  +     A 
Sbjct: 74  AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 133

Query: 422 VLEPTNKRA 430
            L P    A
Sbjct: 134 GLTPEQVVA 142

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 13/107 (12%), Positives = 26/107 (24%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +      +       +     A       ++L+       + R              A  
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              +NL  + V A       ++ L   +  +     A  L P    A
Sbjct: 62  GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 8/86 (9%), Positives = 21/86 (24%), Gaps = 7/86 (8%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                   +   + +    +A  L        ++         S +   +    A+    
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDF 417
            +         A   LG  + A++  
Sbjct: 478 ND------HLVALACLG-GRPALDAV 496

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 78.2 bits (194), Expect = 1e-17
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN AY  +    +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 41  LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            ++ +A+   G A    G Y EAIE +  AL L+P +
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN AY  +  + +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 7   LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            ++ +A+   G A    G Y EAIE +  AL L+P
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419
           A  + N   AY + G + +A     KA+ LD ++ +A+   G A    G Y EAIE +  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 420 ALVLEP 425
           AL L+P
Sbjct: 61  ALELDP 66

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 6/162 (3%)

Query: 268 VPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAE 327
           VP G +    T    + R        +  +++   LQ   D     +   +++ +  S E
Sbjct: 15  VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFR---DSYFETHSVE 71

Query: 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKA 386
            A  K       ++  K +    E +      A     +  A   +  +   AE   +KA
Sbjct: 72  DAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
           + L+ + V+A+ + G      G    A   FS AL       
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEAD 382
           +  +     +  + ++     A++++  +   +     AYL              QA + 
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 383 CTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             +A  +D+K   N   +L R T  +    Y EA+E FS A  L+P     
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 334 NQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
           N     K   +A+S Y +A K++    +N   + NRA  +    S+ +A    ++A  LD
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437
               +   R     E L      +E        +  +   SL    L
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHL 335

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 322 QKQSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 379
            +  A+    KG  A         +A    ++A+KL       ++     Y + G    A
Sbjct: 98  AQVEAQALMLKGK-ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156

Query: 380 EADCTKAINLDKK--------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
               + A+   K          V   L+  +  E   +  +++     A+ ++  + R+
Sbjct: 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 13/119 (10%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---------SF 376
            E   + G   +K      A + ++ A+    N  +   N +    +             
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHV 195

Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTA--------REMLGYYKEAIEDFSYALVLEPTN 427
           + +      A+ +D  + +++   G A         +     ++A+  ++ A  ++   
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 15/110 (13%), Positives = 31/110 (28%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 16  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75

Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                A  LD K++  +     +         A+      L+ +P  ++ 
Sbjct: 76  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 12/99 (12%), Positives = 33/99 (33%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G        +  A +    A++L  ++A  ++   A         +A     +A++++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             V+       +   +  Y  A +    A+ ++      
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 17/99 (17%), Positives = 44/99 (44%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           +        ++ +  +    A+++N N+A  +++    Y  S ++  A A+  +A+ L  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            + + + + G         +EA++ ++ AL + P   R 
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 15/109 (13%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G    ++++   AI     A  L+  +   ++  A ++    +   A A     +    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 392 KNVKAY---------------LRRGTAREMLGYYKEAIEDFSYALVLEP 425
           +  +                             Y+E       AL + P
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 11/90 (12%), Positives = 26/90 (28%)

Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
             L+  + Y                   + L+  +  +A            +  +A+   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           G  +        AI   ++A +L+P +   
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 9/114 (7%), Positives = 28/114 (24%), Gaps = 15/114 (13%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 376
                  +     A++     +          S               +    +     +
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +       A+ ++  + + +   G    +   Y  A  +   A+ L P + + 
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            G     +  +  +A+  Y  A+ +N        N A +Y     +  A     +AI + 
Sbjct: 212 LGA-TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270

Query: 391 KKNVKAYLRRG--TAREMLGYYKEAIED 416
                          R M  +++  +  
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNV 298

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 12/57 (21%), Positives = 16/57 (28%)

Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           G  LQ   D     N      +  +  G +   L    EA   F       P  + A
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 21/116 (18%), Positives = 31/116 (26%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
                +         Y   +  +A  F+      +  N  Y    AA Y     F QA  
Sbjct: 32  PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437
               A  L K +       G  +  L    +A E F   +      K    +   L
Sbjct: 92  LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYL 147

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 62.1 bits (151), Expect = 8e-12
 Identities = 11/100 (11%), Positives = 32/100 (32%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
           E  + +      + + +   +   +  +      + A  +   G   +AE         D
Sbjct: 7   ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             NV   +      ++   +++A + ++ A  L   +   
Sbjct: 67  FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 14/94 (14%), Positives = 32/94 (34%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           KG    K  ++ +A+    +    +  +     +   AY+++G+  +      +++    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            NVK     G     +  Y  A+          P
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            G  AY       +       ++    +N    +     Y++   +  A     K    +
Sbjct: 48  LGI-AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
             N     R G A + LG + EAI+ F  AL L P
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.8 bits (185), Expect = 5e-16
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            G   Y   +++  A+    +  + N  N         A    G F +A      A+ L 
Sbjct: 82  LGL-TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
               K +     + E +G ++EA+  F  A  L+      
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 15/78 (19%), Positives = 29/78 (37%)

Query: 353 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 412
           +  +     YY ++  ++ ++G + QA     +  + D  +V   L  G A    G    
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 413 AIEDFSYALVLEPTNKRA 430
             E    +L   P N + 
Sbjct: 61  GTELLERSLADAPDNVKV 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            G  A  +     +AI  +  A+ L  N    +   A +Y + G   +A     KA  LD
Sbjct: 116 LGV-ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174

Query: 391 KKNVKAY 397
           +      
Sbjct: 175 EGASVEL 181

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 1/134 (0%)

Query: 298 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
           +     Q Q  ++   K    +T N  +    A E+G +  K+      I F   AI  +
Sbjct: 36  SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95

Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
             +A  +        E+ +   A     + + L   N+KA +    +     + ++A E 
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155

Query: 417 FSYALVLEPTNKRA 430
               +   P  K  
Sbjct: 156 LKNWIKQNPKYKYL 169

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 18/99 (18%), Positives = 43/99 (43%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G   +   ++ +AI  +  A+ +   + + ++   A         +A    T+A+ +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             +++    G +   LG Y+EA+ +F  AL L+  ++  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 321 NQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFL 377
             K+ +     + +++  D          Y EA   NG+  +    +     +  SG F 
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230

Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +A      A+ +  ++   + R G         +EA+E ++ AL ++P   R+
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 305 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----A 360
           E+A  A +S        Q +  E+A+       ++ Q    +S   +    +  N     
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65

Query: 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
                     L+ G           AI  D  + +A+   G  +      + AI      
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 421 LVLEPTNKRA 430
           L L+P N +A
Sbjct: 126 LELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 14/99 (14%), Positives = 29/99 (29%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G    +++    AI      ++L  NN       A +Y  +     A       I  + 
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           K       +  +  +     ++  D S    ++     A
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 12/108 (11%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA----- 386
                        A       IK N        N+  +   +    ++  D +       
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 387 -------INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
                   N D  +       G    + G +  AI+ F+ AL + P +
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
           +A+  YT A+++         N   + +  G++ +A ++   A++L +K+         A
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324

Query: 404 --REMLGYYKEAI 414
               +    + A+
Sbjct: 325 ISGNIWAALRIAL 337

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 15/127 (11%), Positives = 36/127 (28%)

Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
            +               N  +      E+G +  ++     A+  +  A++ +  +   +
Sbjct: 42  DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 101

Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
                   E+   L A +   + + L   N  A +    +       ++A E     L  
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161

Query: 424 EPTNKRA 430
            P     
Sbjct: 162 TPAYAHL 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 385
            +K        D  +L+    +  A++L+  +            +  SG + +A    T 
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242

Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           A+++   +   + + G         +EA+  +  AL L+P   R+
Sbjct: 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 20/99 (20%), Positives = 43/99 (43%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G       ++ KA+  +T A+ +  N+   ++   A         +A A   +A+ L  
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             +++    G +   LG ++EA+E F  AL ++  ++  
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G    +++Q L AIS     ++L  +N T     A ++       QA       +    
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 392 KNVKAYLRR---------GTAREMLGY------YKEAIEDFSYALVLEPTNKRA 430
                             G ++ +LG       + E  E F  A+ L+PT+   
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR--- 400
           +A++ Y  A++L         N   + +  G+  +A     +A+N+ +K+          
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328

Query: 401 --------GTAREMLGYYKEAIEDFSYAL 421
                     A  MLG         +  L
Sbjct: 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 17/99 (17%), Positives = 33/99 (33%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G       +  +A  +++++  ++      +   A ++   G   QA +  T A  L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                YL  G     LG    A E    +  L   +   
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 76.4 bits (188), Expect = 4e-15
 Identities = 16/107 (14%), Positives = 43/107 (40%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
             ++S+++   K +  +   +++  ++  T+ ++++  N   Y    A+  ESG   +  
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359

Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
                 ++   +    +L  G     +    EA   FS +  ++P  
Sbjct: 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 20/132 (15%), Positives = 38/132 (28%)

Query: 296 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355
           V N   +  E+ D+  K   ST +                    +  L+    Y  +I  
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300

Query: 356 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
              ++     +A        F+   A  TK + +D  N+  Y     +    G   +   
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360

Query: 416 DFSYALVLEPTN 427
             +  +   P  
Sbjct: 361 ISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 7/107 (6%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADC 383
           E G  A+       AI+ +  A+ L           A  ++N   AY +   +  A    
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            + + L   +   +               AI     +L + P    A
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 19/100 (19%), Positives = 34/100 (34%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
             +    + +  +AIS YT A +L       Y      +++ G+ L A      +  L +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431
            +       G         + AI  F  AL+L    +   
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 13/99 (13%), Positives = 33/99 (33%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                ++  +  K      + +  +   A  +      YL      +A    +K+  +D 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +   A++    +  + G + +AI  ++ A  L       
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.1 bits (169), Expect = 8e-13
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 7/103 (6%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 389
            G Q  +    L A  +   +  L   +    +              A      A+ L  
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506

Query: 390 -----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
                +K     +   G A   L  Y  AI+  +  L+L   +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G+   K K +  AI    + + L+ N+A  ++  A  YL       A     +++ +  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 392 KNVKAYLRRGTA 403
             + A      A
Sbjct: 582 NEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 14/134 (10%), Positives = 39/134 (29%), Gaps = 3/134 (2%)

Query: 297 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
             +  +   + D    +KL       K  A +   +G        + +A   Y EA+ ++
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 357 GNNATYYSNRAAAYLESGSFLQAEA---DCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 413
                 +    + +L +           + +     D   +++       +         
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 414 IEDFSYALVLEPTN 427
            ED+  ++     +
Sbjct: 291 AEDYLSSINGLEKS 304

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 1/100 (1%)

Query: 332 KGNQAYKDKQWLKAISF-YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
             +    D++W   +   Y+   K +                    L+   D   +IN  
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +K+    L +     +   + + +   +  L ++P N   
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 19/125 (15%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA--- 379
             +   A            + +A    T+    N ++A  Y   A   ++   +  A   
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNL 172

Query: 380 --------------EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
                              +   + K        RG     L  +  A E +  AL+++ 
Sbjct: 173 LGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 426 TNKRA 430
               A
Sbjct: 232 KCYEA 236

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN AY     + +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
             N +A+   G A    G Y EAIE +  AL L+P
Sbjct: 74  PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 61.6 bits (151), Expect = 5e-12
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 49  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107

Query: 391 KKNVKAYLRRGTAREMLG 408
             N +A    G A++  G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
           N+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 418 SYALVLEP 425
             AL L+P
Sbjct: 67  QKALELDP 74

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 12/83 (14%), Positives = 21/83 (25%)

Query: 345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
                   +    +N          Y E   F  A      A++ D     A+   G   
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 405 EMLGYYKEAIEDFSYALVLEPTN 427
           +  G    A + +   L    + 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSR 86

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 7/74 (9%), Positives = 19/74 (25%), Gaps = 4/74 (5%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
           G    + +Q+  A+     A+  +   +  +          G    A       +   + 
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 393 NVKAYLRRGTAREM 406
                      +E+
Sbjct: 86  RGDQ----QVVKEL 95

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 76.2 bits (187), Expect = 6e-15
 Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 1/129 (0%)

Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 361
           +++           +       Q   IA          +   + +    +A  L      
Sbjct: 169 AMEAVHASRNALTGAPLNLTPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVV 227

Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
             ++         +  +      +A  L    V A       ++ L   +  +     A 
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH 287

Query: 422 VLEPTNKRA 430
            L P    A
Sbjct: 288 GLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 13/107 (12%), Positives = 27/107 (25%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L    V A    G  ++ L   +  +     A  L P    A
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 74.7 bits (183), Expect = 2e-14
 Identities = 11/100 (11%), Positives = 25/100 (25%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
                    +   + +    +A  L  +     ++         +  +      +A  L 
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              V A       ++ L   +  +     A  L P    A
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 73.9 bits (181), Expect = 4e-14
 Identities = 12/107 (11%), Positives = 26/107 (24%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L    V A    G  ++ L   +  +     A  L P    A
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.4 bits (172), Expect = 4e-13
 Identities = 12/107 (11%), Positives = 27/107 (25%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L +  V A       ++ L   +  +     A  L P    A
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.4 bits (172), Expect = 4e-13
 Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 1/127 (0%)

Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
            E            +   Q Q   IA          +   + +    +A  L        
Sbjct: 578 LETVQRLLPVLCQAHGLTQVQVVAIA-SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636

Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
           ++         +  +      +A  L    V A    G  ++ L   +  +     A  L
Sbjct: 637 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 696

Query: 424 EPTNKRA 430
                 A
Sbjct: 697 TQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.1 bits (171), Expect = 5e-13
 Identities = 12/99 (12%), Positives = 26/99 (26%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
                   +   + +    +A  L  +     ++         +  +      +A  L  
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             V A    G  ++ L   +  +     A  L P    A
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.7 bits (170), Expect = 8e-13
 Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 1/107 (0%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L    V A    G  +  L   +  +     A  L P    A
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPDQVVA 431

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.3 bits (169), Expect = 1e-12
 Identities = 11/109 (10%), Positives = 24/109 (22%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
                                 + +    +A  L  +     ++         +  +   
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              +A  L    V A    G  ++ L   +  +     A  L      A
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 1/127 (0%)

Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
            E            +     Q   IA          +   + +    +A  L  +     
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670

Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
           ++         +  +      +A  L ++ V A       ++ L   +  +     A  L
Sbjct: 671 ASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGL 730

Query: 424 EPTNKRA 430
            P    A
Sbjct: 731 TPDQVVA 737

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 11/107 (10%), Positives = 23/107 (21%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
                           +   + +    +   L        ++         +  Q     
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L    V A       ++ L   +  +     A  L P    A
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.7 bits (165), Expect = 3e-12
 Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 1/107 (0%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A  L    V A       ++ L   +  +        L P    A
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 4e-12
 Identities = 11/97 (11%), Positives = 24/97 (24%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
             G      +   + +    +A  L        ++         +  +      +A  L 
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
              V A       ++ L   +  +     A  L P  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 4e-12
 Identities = 12/87 (13%), Positives = 24/87 (27%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
           + +    +A  L        ++         +  +      +A  L    V A    G  
Sbjct: 685 RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744

Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRA 430
           ++ L   +  +     A  L P    A
Sbjct: 745 KQALETVQRLLPVLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 3e-11
 Identities = 10/87 (11%), Positives = 24/87 (27%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
           + +    +A  L  +     ++         +  +      +   L    V A       
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472

Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRA 430
           ++ L   ++ +     A  L P    A
Sbjct: 473 KQALETVQQLLPVLCQAHGLTPDQVVA 499

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 10/99 (10%), Positives = 25/99 (25%)

Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
              + +    +A  L  +     ++         +  +      +A  L    V A    
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775

Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
              ++ L   +  +        L      A  S    ++
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 13/87 (14%), Positives = 22/87 (25%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
            A       ++L+       + R              A     +NL    V A       
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRA 430
           ++ L   +  +     A  L P    A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVA 228

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 10/96 (10%), Positives = 24/96 (25%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
           + +    +A  L        ++         +  +      +   L    V A       
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812

Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
           ++ L   +  +     A  L      A  S    ++
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQ 848

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 19/138 (13%), Positives = 32/138 (23%), Gaps = 17/138 (12%)

Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGN-QAYKDKQWLKAISFYTEAIKLNGNNATY 362
            E            +     Q   IA   G  QA +  Q  + +    +A  L  +    
Sbjct: 782 LETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQ--RLLPVLCQAHGLTQDQVVA 839

Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF----- 417
            ++         +  +      +   L    V A              K+A+E       
Sbjct: 840 IASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGG-------KQALETVQRLLP 892

Query: 418 --SYALVLEPTNKRASLS 433
                  L      A  S
Sbjct: 893 VLCQDHGLTLDQVVAIAS 910

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 332 KGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
            G   Y         A  + ++A  L       +     ++       QA A    A  L
Sbjct: 96  VGC-YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
            K      L  G    +    K A   FS AL + P +
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEA 381
           E G  A+++ +W  A  ++ +A++                  +N      +   + +A  
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              +A+ L  +N   Y   G    ++G ++ A++ F  AL L   +  +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 20/86 (23%), Positives = 36/86 (41%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G+   K K++ +A+ ++ +A+ L   NA+ YS     +   G+F  A      A+ L +
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDF 417
            +  +    G   EM     EA    
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 15/92 (16%), Positives = 30/92 (32%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
           +A++ Y  A +L              Y  + +   AE   ++A+++  ++       G  
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435
               G +K A + F  AL              
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 361
           S  + ++      +       +++ ++      + Y +  +       +  ++ +  +A+
Sbjct: 2   SYNKPSETVIPESVDGL----QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYA 420
                    +E     +      K ++L   N  ++   G    M+G   + A    S A
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117

Query: 421 LVLEPTNKRA 430
             LE T   A
Sbjct: 118 TTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G +         A  F+++A+ +   +            ++G +  AE     A+   K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 392 ---------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
                    K        G     L  Y EA++    ALVL P N
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 1/100 (1%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLD 390
                 +  +  +      + + L  +N   +      YL  G     A    +KA  L+
Sbjct: 62  HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           K    A++  G +  +   + +A+  +  A  L       
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
           +G   Y    +  KA +   +A+ L  +     S  A  YL  G   +A A   KA+   
Sbjct: 124 RGL-VYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            K++   +R  +A  + G  +EA    + AL    
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAAR--AAALEHHH 214

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
             + ++  ++        +A+S   +A ++N   A  +  R   Y   G   +AEA   +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           A+ L +   +           +G   EA+  ++ AL   P +   
Sbjct: 144 ALAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 66.8 bits (164), Expect = 5e-13
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 11/105 (10%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
            G Q Y   ++  A++ +  A+K N  +       A   L+ G    A  +    +    
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 392 KNVKAYLRRGTA-----------REMLGYYKEAIEDFSYALVLEP 425
           + +  Y+    A               GY ++A+     A  + P
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 13/106 (12%)

Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-----------SGSFLQA 379
                         A+      +         Y   + AY+             G   QA
Sbjct: 45  LAR-TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103

Query: 380 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            +    A  ++ +    +L+RG    +LG   +A      AL LE 
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 9/68 (13%), Positives = 20/68 (29%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
                           G +  A     +A+  + ++ +A       +  LG    A+E+ 
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 418 SYALVLEP 425
              +   P
Sbjct: 63  KTLVARTP 70

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
                Y     L +A++ Y +A++    +       A+A L  G   +A        +  
Sbjct: 157 LAE-LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 15/105 (14%), Positives = 29/105 (27%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 12  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
                A  LD K++  +     +         A+      L+ +P
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 9/66 (13%), Positives = 23/66 (34%)

Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
               + L+  +  +A          + +  +A+   G  +        AI   ++A +L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 425 PTNKRA 430
           P +   
Sbjct: 82  PKDIAV 87

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 9/69 (13%), Positives = 24/69 (34%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +  E  +  G    ++++   AI     A  L+  +   ++  A ++    +   A A  
Sbjct: 49  EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108

Query: 384 TKAINLDKK 392
              +    +
Sbjct: 109 RAWLLSQPQ 117

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 70.6 bits (172), Expect = 3e-13
 Identities = 24/98 (24%), Positives = 40/98 (40%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
            +   +  +  +A+  Y EAI+++   A  YSN      E      A    T+AI ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              A+    +  +  G   EAI  +  AL L+P    A
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 68.7 bits (167), Expect = 1e-12
 Identities = 19/98 (19%), Positives = 41/98 (41%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              AY   G   + +   + A++ ++ A+ + P    A
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 22/108 (20%), Positives = 43/108 (39%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
             A+     GN   + +    A+  YT AI++N   A  +SN A+ + +SG+  +A A  
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431
             A+ L      AY       +++  + +  E     + +       +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 15/70 (21%), Positives = 30/70 (42%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
            +A   +N A    E G+  +A     KA+ +  +   A+    +  +  G  +EA+  +
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 418 SYALVLEPTN 427
             A+ + PT 
Sbjct: 67  KEAIRISPTF 76

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 13/107 (12%), Positives = 26/107 (24%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           Q         +                  + L+  +    +             +A    
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +A +   ++    L  G A E  G  + A   ++ A  L P     
Sbjct: 81  QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 66.0 bits (161), Expect = 8e-12
 Identities = 15/90 (16%), Positives = 27/90 (30%)

Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
              + +     A++    +   +   A A L  G     E    + + L   + +A  R 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           G  R     + EA      A    P +   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
              E     G   +  ++  +A     +A      +         A  ++G    A A  
Sbjct: 55  GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433
           T+A  L  +      +    R  L  +  A++  S  +         ++ 
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDW-RALDVLSAQVRAAVAQGVGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 373 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +    +       A+    ++  A+L    A   +G            L L P +  A
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 64.9 bits (158), Expect = 8e-13
 Identities = 17/88 (19%), Positives = 32/88 (36%)

Query: 343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402
                      +++ +      + A    +SG +  A         LD  + + +L  G 
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 403 AREMLGYYKEAIEDFSYALVLEPTNKRA 430
            R+ +G Y  AI  +SY  V++    R 
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 16/83 (19%), Positives = 26/83 (31%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
           G       Q+  AI  Y+    ++     +  + A   L+ G   +AE+    A  L   
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 393 NVKAYLRRGTAREMLGYYKEAIE 415
             +          ML   K   E
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKE 144

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 8/57 (14%), Positives = 16/57 (28%)

Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           G              +    ++        +   G Y++A   F    VL+  + R 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 66.5 bits (163), Expect = 8e-13
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
            Q + I  +   +  + + + +A +   +A+K +  N   +  RA  Y       +A+  
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 383 CTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIEDFSYAL 421
             +A+++   + +     G      L    E++  F  AL
Sbjct: 65  FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 344 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401
           ++++++ +A+             N+     + G F  AEA   +++    +   A+    
Sbjct: 95  ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154

Query: 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
             + + G   +A   F          +   L
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
             +   +  A  Y+    + QA A    A+  D KN  A+L R    + L    +A E F
Sbjct: 6   QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65

Query: 418 SYALVLEPTNKRA 430
             AL ++P +   
Sbjct: 66  RQALSIKPDSAEI 78

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           KG  + K  Q+  A ++   ++         +   A   + +G    A+    K  +  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
                 L  G           A   + Y   L+ 
Sbjct: 179 VLQADDLLLGWKIA--KALGNAQAAYEYEAQLQA 210

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 16/124 (12%), Positives = 43/124 (34%)

Query: 298 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 357
           +  + L  +               + ++ +   + G    +     +A     +A++++ 
Sbjct: 9   HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
           ++A  ++  A  +        A+ +  KA+  D +N +     G        Y+EA +  
Sbjct: 69  SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128

Query: 418 SYAL 421
             A 
Sbjct: 129 LEAS 132

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 18/82 (21%), Positives = 30/82 (36%)

Query: 349 YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 408
             +  K        Y      YL+ G+  QA+    KA+ +D  +  A+       +   
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 409 YYKEAIEDFSYALVLEPTNKRA 430
             K A E++  AL  +  N R 
Sbjct: 86  EPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 13/98 (13%), Positives = 33/98 (33%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
           G  + + K+  +A  ++ ++++LN N  +     A    +   ++ A            +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           N ++ L      ++      A         L P +   
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 2/89 (2%)

Query: 344 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401
           +A     EA +  L    +  + N     L+     QA+    K++ L++      L   
Sbjct: 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182

Query: 402 TAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                   Y  A + +         N R+
Sbjct: 183 DLLYKEREYVPARQYYDLFAQGGGQNARS 211

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
                +    +    A++   +A + N N     S  A+ +  +  + +AE    K  + 
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 390 DKKNVKA---YLRRGTARE-MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
           +   V     +LR G  +   +    +AI  F   + +   ++      D+L+K+
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 19/117 (16%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
                + ++  +      EA++          + A  Y       +A     KA+     
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 393 NVKAYLRRGTA-------------------REMLGYYKEAIEDFSYALVLEPTNKRA 430
           N   + + G                     R++L     A+     A        R 
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 324 QSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE- 380
           +S E+  E+G    K    Q  +A   + +A++    N  + S  A A     ++  ++ 
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193

Query: 381 --ADCTKAINLDKKNVKAYLRRGTA----REMLGYYKEAIEDFSYALVLEPTNKRA 430
                 +AI L+  N    +         RE      E  +    AL   P     
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 19/152 (12%)

Query: 298 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-- 355
           N+        D   K    T   N++  A +        +   Q   A+    +A +L  
Sbjct: 23  NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82

Query: 356 -------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA--------YLRR 400
                     +   + N A  Y   G     +    K  ++ +K                
Sbjct: 83  QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142

Query: 401 GTAREMLG--YYKEAIEDFSYALVLEPTNKRA 430
           G  R   G    + A   F  AL  +P N   
Sbjct: 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394
           Q Y+ K   KAI  + E +K+N  +            +    LQ  A     ++ +  + 
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQKSR--------EKEKMKDKLQKIAK--MRLSKNGADS 430

Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
           +A       +E+    ++A ED    L        AS 
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 63.6 bits (154), Expect = 3e-11
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
                 +KQ     +     + L    N +  Y  +A + L  G   ++       I+L+
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
             +   Y+  G   EM G  +EA + +  A  L P  
Sbjct: 308 M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAY--------LESGSFLQAEADCTKAINLDK 391
           K   +A     E ++ +       + +A           L+         +    + L +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 392 KNVKA--YLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
            N  +  Y  +  +  + G   E+ +  +  + LE +
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 4/131 (3%)

Query: 290 RFLLDTVQNMYASLQEQADIATKSKLSTNTF--NQKQSAEIAKEKGNQAYKDKQWLKAIS 347
           + L+D V++    L E+   A  +++            + I + K   A    +  ++  
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 348 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL-RRGTAREM 406
                I L   +   Y      Y   G   +A      A NL       Y    G  +  
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357

Query: 407 LGYYKEAIEDF 417
           + Y    ++ F
Sbjct: 358 VPYVVPYLDKF 368

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 344 KAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
           +A+ +Y +AI            Y    + +   G + +AEA     +     +    +  
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNK 428
                 LG Y++ +E     +     ++
Sbjct: 68  AMVLYNLGRYEQGVELLLKIIAETSDDE 95

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 60.3 bits (145), Expect = 4e-11
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 23/141 (16%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAA 369
           +   A +A     +     ++ +A +    A++++            G +A  ++  A A
Sbjct: 7   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66

Query: 370 YLESGSFLQAEADCTKAINLDKKN-----------VKAYLRRGTAREMLGYYKEAIEDFS 418
                SF +A     KA++   +            + A   R  A + LG   EA+ +F 
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 419 YALVLEPTNKRASLSADRLRK 439
             + +    K  +   +R+ +
Sbjct: 127 KVVEMIEERKGETPGKERMME 147

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 304 QEQADIATKSKLSTNTFNQKQS-AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 362
            ++ D+A K        ++  +  ++A    + A   ++   A   + E           
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202

Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
            + +AA ++  G +  AE    +A++ D  + +  +      + LG   E    +   L
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 2/112 (1%)

Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-- 375
            T +Q  S E          K  +   A     +    + +        A   L +G   
Sbjct: 122 RTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181

Query: 376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
              A     +  +     +     +       G ++ A      AL  +  +
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 66/493 (13%), Positives = 133/493 (26%), Gaps = 147/493 (29%)

Query: 1   MPG-GSSSGAAVAVAADLVD--FSLGID--TVGGVRVPSAFCGIL-----GFRPSYGA-V 49
           + G G +  A     +  V       I    +     P     +L        P++ +  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 50  SHMGIIPISTS---------------------LDTVGWFARDPKILRHVGH---VLLQLP 85
            H   I +                        L  V     + K          +LL   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-Q---NAKAWNAFNLSCKILL--- 270

Query: 86  FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKV 142
                + R   + D       + A     + +              E      +Y D + 
Sbjct: 271 -----TTRFKQVTDF------LSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315

Query: 143 PSL-KGFHKTN-------GE-LKNVMRLIQRYE--FKNNHNEWIESVKPALDPDISAEIG 191
             L +    TN        E +++ +     ++    +     IES    L+P    ++ 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 192 EMLE-------ISETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 242
           + L        I   ++       I++++   ++ L K                     +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-------------------YSL 416

Query: 243 LSEDYQNRAFSLLSIASVSGCCQV--------------TVPLGY--YDKCPTSV-----S 281
           + +  +    S+ SI  +    ++               +P  +   D  P  +     S
Sbjct: 417 VEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 282 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 341
            I  H      L  +++      E+  +     L      QK   +      + +  +  
Sbjct: 476 HIGHH------LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523

Query: 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRR 400
            L+ + FY   I    +N   Y     A L+   FL + E +   +   D       LR 
Sbjct: 524 -LQQLKFYKPYIC---DNDPKYERLVNAILD---FLPKIEENLICSKYTD------LLRI 570

Query: 401 GTAREMLGYYKEA 413
               E    ++EA
Sbjct: 571 ALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 56/403 (13%), Positives = 118/403 (29%), Gaps = 129/403 (32%)

Query: 89  QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF 148
           Q  P+ I+  ++   ++    D V       T +LF   + K E + + F      ++  
Sbjct: 39  QDMPKSILSKEEIDHIIMSK-DAVSG-----TLRLFWTLLSKQEEMVQKF------VEEV 86

Query: 149 HKTNGELKNVMRLIQRYEFKNNHNEWI------ESVKPALDPDISAEIGEMLEISETVIE 202
            + N            Y       +++      E  +P++   +  E  + L     V  
Sbjct: 87  LRIN------------Y-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 203 NCKSIRNEM----RSAISSLLKDDGILVTPTTAYPPPKLG----GKEMLSEDYQNRAFSL 254
                R +     R A+  L     +L+           G    GK  +       A  +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI-----D-----GVLGSGKTWV-------ALDV 170

Query: 255 LSIASVSGCCQVTVPLG-YYDKCPTSVSFIARHGGDRFLLDTVQNMYA----SLQEQADI 309
                V    Q  +    ++      ++          +L+ +Q +      +   ++D 
Sbjct: 171 CLSYKV----QCKMDFKIFW------LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 310 ATKSKLSTNTFNQKQSAEIAKEKGNQAY------KDKQWLKAISF--------------- 348
           ++  KL  ++   +    +  +            ++ +   A +                
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 349 -----YTEAIKLNGNNATYYSNRA----AAYLESGSF-LQAEADCT---KAINLDKKNVK 395
                 T  I L+ ++ T   +        YL+     L  E   T   + +++    + 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSI----IA 334

Query: 396 AYLRRGTAREMLGYYK--------EAIEDFSYALVLEPTNKRA 430
             +R G A      +K          IE  S   VLEP   R 
Sbjct: 335 ESIRDGLAT--WDNWKHVNCDKLTTIIES-SLN-VLEPAEYRK 373

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 40/271 (14%), Positives = 89/271 (32%), Gaps = 66/271 (24%)

Query: 189 EIGEM-------LEI-SETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 238
           E GE        L +  +  ++N  CK +++  +S +S    D  I+++        +L 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLF 68

Query: 239 G--------------KEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----DKCPTSV 280
                          +E+L  +Y+   F +  I +     Q ++    Y    D+     
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDN 123

Query: 281 SFIARHGGDRF-LLDTVQNMYASLQEQADIAT-------KSKLSTNTFNQKQSAEIAKEK 332
              A++   R      ++     L+   ++         K+ ++ +      S ++  + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKM 180

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
             + +    WL   +  +    L       Y               + +D +  I L   
Sbjct: 181 DFKIF----WLNLKNCNSPETVLEMLQKLLYQID--------PNWTSRSDHSSNIKLRIH 228

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
           +++A LRR    +    Y+  +      LVL
Sbjct: 229 SIQAELRRLLKSKP---YENCL------LVL 250

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 14/88 (15%), Positives = 28/88 (31%)

Query: 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
           K   + +++ T  I+    N   + +R           Q        +N D KN  A+  
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205

Query: 400 RGTAREMLGYYKEAIEDFSYALVLEPTN 427
           R    +    +   ++     L  +  N
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-KAINLD 390
                 +D++  +A     +AI+LN  N T +  R          L  E +     I   
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            KN + +  R    E L    + +E  +  L  +  N  A
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           +       +   + + F  + +  +  N   + +R     E   +        + +  D 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 392 KNVKAYLRRGTAREMLGYY------KEAIEDFSYALVLEPTN 427
           +N   + +R         Y      +  ++     + L P N
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 391 KKNVKAYLRRGTAREMLG 408
             N +A    G A++  G
Sbjct: 74  PNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
           N+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 418 SYALVLEP 425
             AL L+P
Sbjct: 67  QKALELDP 74

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINL 389
           G        +  ++  Y +A++L G NA  Y+  A       S     Q  A   KA+ L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
           D   + A +   +   M   Y +AIE +   + L    
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%)

Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
           +   +  ++  +Q    +     +    + I+ N  N+  ++     YL    +  +   
Sbjct: 7   RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66

Query: 383 CTKAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRA 430
             +A+ L  +N + Y    T            +       AL L+     A
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 12/73 (16%), Positives = 25/73 (34%)

Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
            +       A  +L+  +  +A A   + +  D   V  Y   G   E L    +AI+ +
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 418 SYALVLEPTNKRA 430
           +  + +       
Sbjct: 65  AQGIEVAREEGTQ 77

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 4/81 (4%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
             +  K     +A++ + E ++ + +    Y +    Y        A     + I + ++
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 393 NVKAYLRRGTAREMLGYYKEA 413
                       E+     +A
Sbjct: 74  EGTQK----DLSELQDAKLKA 90

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 1/90 (1%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL 389
           +   +         A+    E ++         Y     AY + G + +A  +   AI L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419
           +  +     R+     +  Y K+      +
Sbjct: 65  NPDSPALQARKMVMDILNFYNKDMYNQLEH 94

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 423
                 +  G    A     + +  +     +AY   G A   LG +++A+ ++  A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 424 EPTNKRA 430
            P +   
Sbjct: 65  NPDSPAL 71

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSF 376
           + + S      +G +  K       +SF+  A+++   +    +  YS    AY     +
Sbjct: 4   SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63

Query: 377 LQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYAL 421
            +A       + L     D+    KA    G   ++LG + EAI      L
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 21/105 (20%)

Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE----------ADCTKAINLDKKN 393
           +         K N  +A   +      LE   F                  +A+ +D K 
Sbjct: 20  QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79

Query: 394 VKAYLRRGTA-----------REMLGYYKEAIEDFSYALVLEPTN 427
            +A    G A            E    +  A + F  A+  +P N
Sbjct: 80  DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 12/113 (10%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESG 374
               +A +A ++  +  +     KA+  Y +A  +  N       A      +   +   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169

Query: 375 SFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYAL 421
            F +A A   K  ++ K+        K  + +   +     Y  A +    + 
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 11/150 (7%)

Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-- 359
               +A+   K+       +   +A    +        KQ  +A   Y +  + + NN  
Sbjct: 12  EHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS 71

Query: 360 ----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-----AYLRRGTAREMLGYY 410
               A  +        +     +A     KA  +  +N         L R          
Sbjct: 72  LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDL 131

Query: 411 KEAIEDFSYALVLEPTNKRASLSADRLRKV 440
            +A+  +  A  +    +R   +A+ + K 
Sbjct: 132 SKAVHLYQQAAAVFENEERLRQAAELIGKA 161

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 388
           G +  K       +SF+  A+++   +    +  YS    AY     + +A       + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 389 L-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYAL 421
           L     D+    KA    G   ++LG + EAI      L
Sbjct: 72  LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 26/127 (20%)

Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN----ATY 362
           +   + A++ G+               +    W  A   + E  +L      +    +  
Sbjct: 50  QALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109

Query: 363 YSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIED 416
               A   L  G    A  +  K++       D+  +  A+   G   +      EA + 
Sbjct: 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH 169

Query: 417 FSYALVL 423
           +  A  +
Sbjct: 170 WLRARDI 176

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA----KEKGNQAYKDKQWLKAIS 347
           +L+ ++ +     E+    +   L  +    + +  +       +G      +++L AI 
Sbjct: 65  MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIK 124

Query: 348 FYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------V 394
           F+ +A             A ++   + +Y        +     +A  + K++       +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184

Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYAL 421
           + +    T    L  Y++AI  F  A 
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAY 211

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 366
                  ++ + AE   +     Y  KQ   ++ +  +A ++       N      +S  
Sbjct: 131 SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190

Query: 367 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYA 420
           A  +L+   +  A +   KA ++ +         +     G  +     Y++AI  F  A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 421 LVL 423
           + +
Sbjct: 251 IAV 253

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 13/138 (9%)

Query: 297 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
              Y +     ++    +                 +G   +  K++++AI +Y EA K  
Sbjct: 72  GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131

Query: 357 GNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTA 403
                    A ++   A AY        +     +A+++ + +       +++       
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191

Query: 404 REMLGYYKEAIEDFSYAL 421
            +   +Y +A+     AL
Sbjct: 192 YDDFKHYDKALPHLEAAL 209

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 13/128 (10%)

Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 366
           K      +  + AE   +     Y  KQ   ++    +A+ +       +          
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188

Query: 367 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYA 420
           A  Y +   + +A      A+ L            + L    + +  G  + A+E F  A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 421 LVLEPTNK 428
             +     
Sbjct: 249 AKVSREKV 256

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 23/125 (18%)

Query: 322 QKQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLNGNN----ATYYS 364
              +++                       +       ++F+  AI+    +    +  YS
Sbjct: 31  HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90

Query: 365 NRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFS 418
               AY   G + +A       + L     D+    K+    G   +++G + EA     
Sbjct: 91  QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150

Query: 419 YALVL 423
             L L
Sbjct: 151 RHLTL 155

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 14/124 (11%)

Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNR 366
                  +  Q+  I     N   ++    K I  + + +K           +     N 
Sbjct: 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202

Query: 367 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIED-FSY 419
           A A      + ++     KAI +  +        + Y +RG     L Y +  IED +  
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262

Query: 420 ALVL 423
           A   
Sbjct: 263 ASFF 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	100.0
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	100.0
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	100.0
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	100.0
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	100.0
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	100.0
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	100.0
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.81
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.77
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.74
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.69
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.68
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.68
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.67
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.65
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.65
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.64
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.64
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.58
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.58
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.57
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.56
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.5
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.47
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.45
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.44
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.4
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.4
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.4
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.4
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.39
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.39
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.38
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.37
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.37
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.36
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.36
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.35
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.35
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.34
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.33
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.31
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.29
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.28
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.28
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.27
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.27
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.24
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.21
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.21
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.21
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.2
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.2
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.2
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.18
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.17
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.16
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.13
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.11
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.1
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.08
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.08
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.07
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.03
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.02
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.01
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.01
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.99
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.99
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.98
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.98
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.98
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.97
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.97
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.93
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.87
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.86
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.82
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.82
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.76
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.76
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.74
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.74
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.6
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.6
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.6
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.55
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.48
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.47
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.46
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.4
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.38
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.26
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.13
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.11
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.04
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.01
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.97
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.82
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.71
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.57
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.56
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.54
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.53
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.51
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.14
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.89
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.84
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.6
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.56
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.49
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.3
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.14
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.09
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.57
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.96
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.85
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.77
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.44
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.2
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.18
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.17
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.03
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.49
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.77
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.28
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	90.7
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.49
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	89.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.48
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.88
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	84.79
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.73
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.17
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	83.06
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.96
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.78
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.04

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=100.00  E-value=2.5e-57  Score=425.36  Aligned_cols=280  Identities=22%  Similarity=0.272  Sum_probs=234.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       127 ~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~  206 (414)
T 1o9p_A          127 SPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA  206 (414)
T ss_dssp             CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcc---cCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchhH
Q 013459           81 LLQLPFA---AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL  155 (442)
Q Consensus        81 ~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  155 (442)
                      +.+.+..   ....+.||++..+...  ...++++.++++++++.|+  |+.+ ++++        +|....      .+
T Consensus       207 l~g~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~--------~~~~~~------~~  269 (414)
T 1o9p_A          207 MTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEPAAEQGLQAAIKAAERAGASV-QAID--------LPEAVH------EA  269 (414)
T ss_dssp             HHCCGGGSSCCCCSSCEEEECCCGGG--CCCCHHHHHHHHHHHHHHHHTTCEE-EECC--------CCHHHH------HH
T ss_pred             hcCCCccccccCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEec--------CcchHH------HH
Confidence            9876521   1245678888766532  2356889999999999997  4444 2222        222110      12


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCC
Q 013459          156 KNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP  235 (442)
Q Consensus       156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~  235 (442)
                      ...+..++..|....+..++......+.|.++.++..+..++..+|.++++.|+.+++.++++|+++|+||+||++.++|
T Consensus       270 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~  349 (414)
T 1o9p_A          270 WRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAP  349 (414)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCC
Confidence            33344566678887888888877778999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHHHH
Q 013459          236 KLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  304 (442)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~  304 (442)
                      +++......       ..||.++|++|+|+++||++...|+|+|+|+++++++|..+++++..+++.+.
T Consensus       350 ~~~~~~~~~-------~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~  411 (414)
T 1o9p_A          350 AKALASTGD-------PRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (414)
T ss_dssp             BGGGCCCCC-------GGGTHHHHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccCCcc-------cchhhhhHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            875321111       25799999999999999998756999999999999999999999999987653

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-57  Score=429.01  Aligned_cols=282  Identities=26%  Similarity=0.366  Sum_probs=235.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       143 ~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~  222 (434)
T 2dc0_A          143 QAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI  222 (434)
T ss_dssp             BCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccC--CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchhHH
Q 013459           81 LLQLPFAAQ--RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELK  156 (442)
Q Consensus        81 ~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  156 (442)
                      +.+. ..++  ..+.||++..+...  ...++++.++++++++.|+  |+.+ ++++        +| +..       ..
T Consensus       223 l~g~-~~d~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~--------~p-~~~-------~~  282 (434)
T 2dc0_A          223 LAGE-SIPLEGVQNPVFGVPLDFLE--GRLGVEVRKAFTRLLEDLPALRAEV-REVS--------LP-LEG-------VY  282 (434)
T ss_dssp             HHTS-CCCCCCCCSCEEEECHHHHT--TCSCHHHHHHHHHHHHHTTTTTCEE-EECC--------CC-CTT-------HH
T ss_pred             HhCC-CCCcccccCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------CC-cHH-------HH
Confidence            9876 3332  45678888766432  2356889999999999997  4433 2222        22 221       22


Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCC
Q 013459          157 NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK  236 (442)
Q Consensus       157 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~  236 (442)
                      ..+..+...|....+..++..+...+.|.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||++.+||+
T Consensus       283 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~  362 (434)
T 2dc0_A          283 EVYTRLVRYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPP  362 (434)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCcc
Confidence            33445566777777777777777789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc----ccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459          237 LGGKEM----LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       237 ~~~~~~----~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      ++....    ........+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+++.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~  432 (434)
T 2dc0_A          363 LGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR  432 (434)
T ss_dssp             TTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence            876421    111122234678999999999999999998789999999999999999999999988753

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=6.3e-56  Score=421.66  Aligned_cols=281  Identities=25%  Similarity=0.383  Sum_probs=222.3

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++++|++||||||++|++.++++
T Consensus       137 ~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~  216 (471)
T 3kfu_E          137 VPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDA  216 (471)
T ss_dssp             CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459           81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV  142 (442)
Q Consensus        81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~  142 (442)
                      +.+.+..+                ...+.||++..++.   ...++++.++++++++.|+  |+.+ ++++        +
T Consensus       217 l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v-~~v~--------~  284 (471)
T 3kfu_E          217 AAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSV-REVS--------W  284 (471)
T ss_dssp             HCSCCTTCTTCCCCCCCTTCCSCCCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEE-EEEC--------C
T ss_pred             hcCCCcccccccCCCcchhhhhccCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCee-eeec--------C
Confidence            98754322                13456888877654   3457899999999999997  4444 2222        2


Q ss_pred             CchhhhhccchhHHHHHHHHHHHHHHHhh-----------------HHHHHhhCCCCCHhHHHHHHhcccC-----CHHH
Q 013459          143 PSLKGFHKTNGELKNVMRLIQRYEFKNNH-----------------NEWIESVKPALDPDISAEIGEMLEI-----SETV  200 (442)
Q Consensus       143 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  200 (442)
                      |.+..       ....+..+...|+..++                 .+++......+++.+..++..+...     +..+
T Consensus       285 p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  357 (471)
T 3kfu_E          285 PSLPQ-------ALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAY  357 (471)
T ss_dssp             TTGGG-------HHHHHHHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTT
T ss_pred             ccHHH-------HHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHH
Confidence            33221       22334444445544332                 2223322233888888887665422     3358


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeE
Q 013459          201 IENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSV  280 (442)
Q Consensus       201 ~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~  280 (442)
                      |.++++.|..+++.++++|+++|+||+||++.+||+++.... ..... ....||.++|++|+|+++||+|..+|+|+|+
T Consensus       358 ~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~-~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGl  435 (471)
T 3kfu_E          358 YGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRD-PLAMY-REDLYTVGANLTGLPALSFPAGFEGHLPVGL  435 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCS-HHHHH-GGGTTTHHHHHHCCCEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccc-hHHHH-HHhhhhhcchhhCCCeEEEeCCCCCCCCeEE
Confidence            999999999999999999999999999999999999876432 21111 2223899999999999999999878999999


Q ss_pred             EEecccCCcHHHHHHHHHHHHH
Q 013459          281 SFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       281 ~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      |+++++++|..+++++..+|+.
T Consensus       436 Qlvg~~~~D~~LL~~A~~lE~~  457 (471)
T 3kfu_E          436 QLLAPWGEDERLLRAALAFEEA  457 (471)
T ss_dssp             EEECSTTCHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998874

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=100.00  E-value=1.5e-55  Score=422.77  Aligned_cols=283  Identities=24%  Similarity=0.343  Sum_probs=221.1

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       150 ~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~v  229 (485)
T 3ip4_A          150 VPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEA  229 (485)
T ss_dssp             CCCSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHH
T ss_pred             CCCCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459           81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  141 (442)
Q Consensus        81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~  141 (442)
                      +.+.+..+                 ...+.||++..+++.  ...++++.++++++++.|+  |+.+ ++++        
T Consensus       230 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~--------  298 (485)
T 3ip4_A          230 ISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVV-EEVS--------  298 (485)
T ss_dssp             HBSCCTTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEE-EEEC--------
T ss_pred             hcCCCcccccccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------
Confidence            98754322                 134578888776542  2356889999999999997  5544 2222        


Q ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHhhHH-------------------HHHhhCCCCCHhHHHHHHhccc-----CC
Q 013459          142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNE-------------------WIESVKPALDPDISAEIGEMLE-----IS  197 (442)
Q Consensus       142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-----~~  197 (442)
                      +|.+..       ....+..+...|+..++..                   +.......+++.+..++..+..     ..
T Consensus       299 ~p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (485)
T 3ip4_A          299 LPNTKF-------GIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYY  371 (485)
T ss_dssp             CTTGGG-------HHHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTT
T ss_pred             CCcHHH-------HHHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhh
Confidence            232211       2233344444454443221                   1122223467777777665431     22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCc
Q 013459          198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP  277 (442)
Q Consensus       198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp  277 (442)
                      ..+|.++++.|..+++.+.++|+++|+||+||++.+||+++.......... ....||.++|++|+|+++||+|..+|+|
T Consensus       372 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlP  450 (485)
T 3ip4_A          372 DAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRP  450 (485)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCC
Confidence            245889999999999999999999999999999999999886533322221 2234899999999999999999889999


Q ss_pred             eeEEEecccCCcHHHHHHHHHHHHH
Q 013459          278 TSVSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       278 ~g~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      +|+|+++++++|..+++++..+|+.
T Consensus       451 vGlqlvg~~~~d~~lL~~A~~lE~~  475 (485)
T 3ip4_A          451 IGLQFIGKPFDEKTLYRVAYQYETQ  475 (485)
T ss_dssp             EEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred             EeEEEEcCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999875

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=100.00  E-value=1.4e-55  Score=424.52  Aligned_cols=284  Identities=23%  Similarity=0.310  Sum_probs=222.4

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++++|++||||||++|++.++++
T Consensus       167 ~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~v  246 (521)
T 3a1k_A          167 EAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSV  246 (521)
T ss_dssp             ECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcccC------------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccc
Q 013459           81 LLQLPFAAQ------------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  140 (442)
Q Consensus        81 ~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~  140 (442)
                      |.+.++.++                  ..+.||++..+.+.. ...++++.++++++++.|+  |+.+ +++++      
T Consensus       247 lag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~Ga~v-~ev~~------  318 (521)
T 3a1k_A          247 IAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEIGCTV-EEVNI------  318 (521)
T ss_dssp             HCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGGTCEE-EEECC------
T ss_pred             HhCCCCCCccccccCCCcchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHCCCEE-EEeCC------
Confidence            987543221                  245678887664321 1246789999999999997  4444 22222      


Q ss_pred             cCCchhhhhccchhHHHHHHHHHH----------------------HHHHHhhHHHHHhhCCCCCHhHHHHHHhcc----
Q 013459          141 KVPSLKGFHKTNGELKNVMRLIQR----------------------YEFKNNHNEWIESVKPALDPDISAEIGEML----  194 (442)
Q Consensus       141 ~~p~~~~~~~~~~~~~~~~~~~~~----------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  194 (442)
                        |.+...       ...+..+..                      .+....+..|...+...+.+.++.++..+.    
T Consensus       319 --p~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~  389 (521)
T 3a1k_A          319 --PWHLHA-------FHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT  389 (521)
T ss_dssp             --THHHHH-------HHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred             --CchHhH-------HHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence              221110       011111111                      112222334445555678999988886653    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHH---HHhhhhccccccccceeeecCc
Q 013459          195 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN---RAFSLLSIASVSGCCQVTVPLG  271 (442)
Q Consensus       195 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~---~~~~~t~~~n~~g~p~~~~p~~  271 (442)
                      ..+..+|.++++.|+.+++.|+++|+++|+||+||+|.+||+++........+..   .++.||.++|++|+|+++||+|
T Consensus       390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g  469 (521)
T 3a1k_A          390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG  469 (521)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence            3567799999999999999999999999999999999999998864322222222   2345789999999999999999


Q ss_pred             cCCCCceeEEEecccCCcHHHHHHHHHHHH
Q 013459          272 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA  301 (442)
Q Consensus       272 ~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~  301 (442)
                      ..+|+|+|+|+++++++|..+++++..+++
T Consensus       470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~  499 (521)
T 3a1k_A          470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK  499 (521)
T ss_dssp             EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence            889999999999999999999999999887

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=100.00  E-value=5.2e-55  Score=420.36  Aligned_cols=288  Identities=18%  Similarity=0.231  Sum_probs=228.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCc--c-cCCCCCcccccccCCHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHV   77 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~--~-p~~~~~d~~Gp~ar~~~d~~~~   77 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+  . |.++++|++||||||++|++.+
T Consensus       146 ~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~  225 (493)
T 3a2q_A          146 SVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAAL  225 (493)
T ss_dssp             CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999998  5 8888999999999999999999


Q ss_pred             HHHhhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459           78 GHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF  138 (442)
Q Consensus        78 ~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~  138 (442)
                      ++++.+.+..+                 ...+.||++..+........++++.++++++++.|+  |+.++ ++++    
T Consensus       226 l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~----  300 (493)
T 3a2q_A          226 LDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVN-DAYP----  300 (493)
T ss_dssp             HHHHBSCCTTCSCCCCCCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEE-ECCC----
T ss_pred             HHHHcCCCCCCcccccCCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEE-EeCC----
Confidence            99998754222                 134568888766531012356889999999999997  55442 2222    


Q ss_pred             cccCCchhhhhccchhHHHHHHHHHHHHHHH---hhHHHHH--hhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q 013459          139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRS  213 (442)
Q Consensus       139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~  213 (442)
                          |.+..     ..+...+..+...|+..   .+..++.  .....+.+.++.++..+..++..+|.++++.|..+++
T Consensus       301 ----~~~~~-----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~  371 (493)
T 3a2q_A          301 ----EALGD-----RSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAG  371 (493)
T ss_dssp             ----GGGGC-----CTHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ----CccCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence                21110     01223344455556554   3333332  2345689999999999999999999999999999999


Q ss_pred             HHHhhc-cCCCEEEeeCCCCCCCCCCCCCcc---------c--HHHHHHHhhhhccccccccceeeecCccC-CCCceeE
Q 013459          214 AISSLL-KDDGILVTPTTAYPPPKLGGKEML---------S--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSV  280 (442)
Q Consensus       214 ~~~~~~-~~~d~li~Pt~~~~a~~~~~~~~~---------~--~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~  280 (442)
                      .+.++| +++|+||+||++.+||+++.....         .  ......+..||.++|++|+|+++||+|.. +|+|+|+
T Consensus       372 ~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGv  451 (493)
T 3a2q_A          372 KVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGV  451 (493)
T ss_dssp             HHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEE
T ss_pred             HHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEE
Confidence            999999 999999999999999998754321         1  11122446789999999999999999975 8999999


Q ss_pred             EEecccCCcHHHHHHHHHHHHH
Q 013459          281 SFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       281 ~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      |+++++++|..+++++..+++.
T Consensus       452 Qlvg~~~~d~~lL~~A~~lE~~  473 (493)
T 3a2q_A          452 QIVAAYGREDLLLQVAAQLEGA  473 (493)
T ss_dssp             EEEESTTCHHHHHHHHHHHHHH
T ss_pred             EEecCCCChHHHHHHHHHHHHh
Confidence            9999999999999999998875

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=100.00  E-value=4.8e-55  Score=416.95  Aligned_cols=284  Identities=23%  Similarity=0.348  Sum_probs=222.8

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++++|++||||||++|++.++++
T Consensus       143 ~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~v  222 (478)
T 3h0l_A          143 VPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEV  222 (478)
T ss_dssp             CCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459           81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  141 (442)
Q Consensus        81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~  141 (442)
                      +.+.+..+                 ...+.||++..+++.  ...++++.++++++++.|+  |+.+ ++++        
T Consensus       223 l~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v-~~v~--------  291 (478)
T 3h0l_A          223 ISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEI-KEVS--------  291 (478)
T ss_dssp             HBSCCTTCTTSCCCCCCCHHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEE-EEEC--------
T ss_pred             hcCCCcccccccccCccchhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------
Confidence            98765332                 134578888776543  2356899999999999997  5444 2222        


Q ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHhhHHH-------------------HHhhCCCCCHhHHHHHHhccc-----CC
Q 013459          142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEW-------------------IESVKPALDPDISAEIGEMLE-----IS  197 (442)
Q Consensus       142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-----~~  197 (442)
                      +|.+..       ....+..+...|+..++..|                   .......+++.+..++..+..     ..
T Consensus       292 ~p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  364 (478)
T 3h0l_A          292 LPHVKY-------SIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYY  364 (478)
T ss_dssp             CTTGGG-------HHHHHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTT
T ss_pred             CCcHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhh
Confidence            232221       22334444455554433211                   112233477778777765532     22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCc
Q 013459          198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP  277 (442)
Q Consensus       198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp  277 (442)
                      ..+|.++++.|..+++.+.++|+++|+||+||++.+||+++.......... ....||.++|++|+|+++||+|..+|+|
T Consensus       365 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlP  443 (478)
T 3h0l_A          365 DAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLP  443 (478)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCC
Confidence            346889999999999999999999999999999999999886533322221 2234899999999999999999888999


Q ss_pred             eeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          278 TSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       278 ~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      +|+|+++++++|..+++++..+|+..
T Consensus       444 vGlQlvg~~~~D~~LL~~A~~lE~~~  469 (478)
T 3h0l_A          444 VGGQLIGKHWDETTLLQISYLWEQKF  469 (478)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998753

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=100.00  E-value=2.5e-55  Score=420.79  Aligned_cols=282  Identities=22%  Similarity=0.341  Sum_probs=218.7

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       138 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~  217 (476)
T 2gi3_A          138 VPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI  217 (476)
T ss_dssp             CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459           81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV  142 (442)
Q Consensus        81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~  142 (442)
                      +.+.+..+                ...+.||++..+++.  ...++++.++++++++.|+  |+.++ ++++        
T Consensus       218 l~g~d~~d~~~~~~p~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~--------  286 (476)
T 2gi3_A          218 ISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVE-RVKI--------  286 (476)
T ss_dssp             HBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEE-EECC--------
T ss_pred             hhCCCCCCccccCCCcchhhhhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEE-EeCC--------
Confidence            98654322                134578888776542  2356889999999999997  54442 2222        


Q ss_pred             CchhhhhccchhHHHHHHHHHHHHHHHhhH-----------------HHHH-hhCCCCCHhHHHHHHhcccCCH-----H
Q 013459          143 PSLKGFHKTNGELKNVMRLIQRYEFKNNHN-----------------EWIE-SVKPALDPDISAEIGEMLEISE-----T  199 (442)
Q Consensus       143 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~  199 (442)
                      |.+..       ....+..+...|+...+.                 +++. .....+.+.+..++..+...+.     .
T Consensus       287 p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  359 (476)
T 2gi3_A          287 PHIKY-------SVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEA  359 (476)
T ss_dssp             TTGGG-------HHHHHHHHHHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHH-------HHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHH
Confidence            22211       112233333344433331                 1222 1234577788887776654332     3


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCcee
Q 013459          200 VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTS  279 (442)
Q Consensus       200 ~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g  279 (442)
                      +|.++++.|..+++.++++|+++|+||+||++.+||+++.. ...... .....||.++|++|+|+++||+|..+|+|+|
T Consensus       360 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~-~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~~GlPvG  437 (476)
T 2gi3_A          360 YFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEI-KDPLTY-YLMDIFTIPANLAGLPAISVPFGFSNNLPVG  437 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTC-CCHHHH-HTTTTTTHHHHHHTCCEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccccc-ccchhh-hhccceeccccccCCceEEEecccCCCCCeE
Confidence            78889999999999999999999999999999999998762 222111 1224689999999999999999988999999


Q ss_pred             EEEecccCCcHHHHHHHHHHHHH
Q 013459          280 VSFIARHGGDRFLLDTVQNMYAS  302 (442)
Q Consensus       280 ~~~~~~~~~d~~ll~~~~~~~~~  302 (442)
                      +|+++++++|..+++++..+++.
T Consensus       438 vqlvg~~~~d~~lL~~A~~lE~~  460 (476)
T 2gi3_A          438 VQVIGRRFADGKVFRIARAIEKN  460 (476)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999998875

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=100.00  E-value=5.3e-54  Score=413.89  Aligned_cols=276  Identities=25%  Similarity=0.321  Sum_probs=215.3

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus       161 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~v  240 (503)
T 1m22_A          161 SPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA  240 (503)
T ss_dssp             CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccc
Q 013459           81 LLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEY  137 (442)
Q Consensus        81 ~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~  137 (442)
                      |.+.+..+                     ...+.||++..+.+.    .++++.++++++++.|+  |+.++ ++++   
T Consensus       241 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~~v~-~~~~---  312 (503)
T 1m22_A          241 IAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVV-PVEL---  312 (503)
T ss_dssp             HCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEE-EECC---
T ss_pred             HcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCCEEE-EeCC---
Confidence            98653221                     134578888766541    45788999999999997  55542 2222   


Q ss_pred             ccccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHh---------------------hCCCCCHhHHHHHHhcccC
Q 013459          138 FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES---------------------VKPALDPDISAEIGEMLEI  196 (442)
Q Consensus       138 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~  196 (442)
                           |.+..+       ...+..+...|+..++..|+..                     ....+++.++.++..+..+
T Consensus       313 -----p~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (503)
T 1m22_A          313 -----PNQGAW-------AEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGL  380 (503)
T ss_dssp             -----TTTTTT-------HHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCT
T ss_pred             -----CcHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCC
Confidence                 222111       1112223333443333333221                     1345777888888888888


Q ss_pred             CHHHHHHHHHHHHHHHHH--HHhhccC--CCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCcc
Q 013459          197 SETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY  272 (442)
Q Consensus       197 ~~~~~~~a~~~r~~~~~~--~~~~~~~--~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~  272 (442)
                      +..+|.++.+.|+.+++.  ++++|++  +|+||+||+ .++|+++.....   +   ...||.++|++|+|+++||+|.
T Consensus       381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~---~---~~~~t~~~nl~G~PaisvP~g~  453 (503)
T 1m22_A          381 ADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD---F---PGESYSAAAVAGYPSLTVPMGQ  453 (503)
T ss_dssp             TCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C---C---TTCCHHHHHHHTCCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc---c---cccccccchhhCCCeEEecccc
Confidence            999999999888888766  9999974  899999999 566766521111   1   1457899999999999999998


Q ss_pred             CCCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          273 YDKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       273 ~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      .+|+|+|+|+++++++|..+++++..+++..
T Consensus       454 ~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~  484 (503)
T 1m22_A          454 IDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT  484 (503)
T ss_dssp             ETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence            8999999999999999999999999998754

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=100.00  E-value=2.7e-51  Score=395.62  Aligned_cols=282  Identities=20%  Similarity=0.212  Sum_probs=208.7

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCC----CcccccccCCHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRH   76 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~----~d~~Gp~ar~~~d~~~   76 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++    +|++||||||++|++.
T Consensus       207 ~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~  286 (573)
T 3ppm_A          207 SPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLAL  286 (573)
T ss_dssp             CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHH
T ss_pred             CCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999998875    8999999999999999


Q ss_pred             HHHHhhCCC------------cc----cCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459           77 VGHVLLQLP------------FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF  138 (442)
Q Consensus        77 ~~~~~~~~~------------~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~  138 (442)
                      +++++.+.+            +.    ....+.||++..+...  ..+++++.++++++++.|+  |+.++ ++++    
T Consensus       287 ~l~~l~~~d~~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~-~~~~----  359 (573)
T 3ppm_A          287 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNY--TMPSPAMRRALIETKQRLEAAGHTLI-PFLP----  359 (573)
T ss_dssp             HHHHHSSHHHHHHCTTSCCCCCCHHHHTCCCCCEEEECSCCSS--SCCCHHHHHHHHHHHHHHHHTTCEEE-ECCC----
T ss_pred             HHHHHhcccccccCCCCCccccchhhcccCCCCEEEEEcccCC--CCCCHHHHHHHHHHHHHHHHCCCEEE-EecC----
Confidence            999986532            11    1245678888755322  2357899999999999997  55552 2222    


Q ss_pred             cccCCchhhhhccchhHHHHHHHHHHHHHHHhh--------------------------HHHHHhhCCCCCHhHHHHHHh
Q 013459          139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH--------------------------NEWIESVKPALDPDISAEIGE  192 (442)
Q Consensus       139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~  192 (442)
                          |.+.....      ..+...+..+....+                          ...+......+.|.+...+..
T Consensus       360 ----p~~~~~~~------~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~  429 (573)
T 3ppm_A          360 ----NNIPYALE------VLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNN  429 (573)
T ss_dssp             ----TTHHHHHH------THHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             ----ccHHHHHH------HHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhh
Confidence                22211100      000000000000000                          000011112234555555556


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecC
Q 013459          193 MLEISETVIENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPL  270 (442)
Q Consensus       193 ~~~~~~~~~~~a~~~r~~~~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~  270 (442)
                      +...+..++++++..|..+++.|.+.|+  ++|+||+|+ +.+|++++....     ....+.||.+||++|+|+++||+
T Consensus       430 ~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPv  503 (573)
T 3ppm_A          430 MRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPV  503 (573)
T ss_dssp             TSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEE
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEec
Confidence            6677899999999999999999999995  599999999 457887764211     11346799999999999999999


Q ss_pred             ccC------------------------------CCCceeEEEecccCCcHHHHHHHHHHHHHHHH
Q 013459          271 GYY------------------------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQE  305 (442)
Q Consensus       271 ~~~------------------------------~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~~  305 (442)
                      +..                              +|+|+|+|+++++++|+.++.++..+++.++.
T Consensus       504 g~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~  568 (573)
T 3ppm_A          504 TTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTP  568 (573)
T ss_dssp             EECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence            742                              69999999999999999999999999886543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=5.9e-21  Score=149.84  Aligned_cols=117  Identities=31%  Similarity=0.465  Sum_probs=114.3

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      +|+.++.+.++|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+.+|+++++++|++..+|+++|
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .++..+|++++|++.|+++++++|++.+++..++.+.
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999998874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.81  E-value=2.2e-18  Score=139.07  Aligned_cols=120  Identities=18%  Similarity=0.100  Sum_probs=110.6

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      ...-+|.+...++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|+++++++|+++.+|
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~  107 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV  107 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence            45556999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +++|.+|..+|++++|+++|++++++.|+.+ .......+.
T Consensus       108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~-~~~~A~~ll  147 (151)
T 3gyz_A          108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK-LKIKAQSYL  147 (151)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence            9999999999999999999999999999876 333333333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=4.2e-18  Score=133.65  Aligned_cols=120  Identities=33%  Similarity=0.423  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |..+..++.+|..+++.|+|++|+..|+++++++|++..++.++|.++.++|++++|+.+|+++++++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHhhhC
Q 013459          403 AREMLGYYKEAIEDFSYALVLE------PTNKRASLSADRLRKVFM  442 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~  442 (442)
                      ++..+|++++|++.|+++++++      |++..++..+..+.+.++
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l~  126 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQRF  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999      999999999999987653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.77  E-value=5.2e-18  Score=137.46  Aligned_cols=119  Identities=11%  Similarity=0.001  Sum_probs=112.1

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|+....++.+|.+|++.|+|++|++.|+++++++|+++.+++.+|.+|.++|++++|+.+|+++++++|+++.+++++
T Consensus        26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH-HHHHHhhCCCChHHHHHHHHHHh
Q 013459          401 GTAREMLGYYKEAIED-FSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |.+|.++|++++|.+. ++++++++|+++.++..+.++..
T Consensus       106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          106 AELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            9999999999887765 59999999999999988887754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.77  E-value=1.7e-17  Score=133.97  Aligned_cols=120  Identities=12%  Similarity=0.075  Sum_probs=112.6

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|.....++.+|..++..|+|++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++|+++.+++++
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            34888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      |.+|..+|++++|+++|+++++++|+++.......++.+.
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM  135 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence            9999999999999999999999999988876666655543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.76  E-value=3.5e-18  Score=136.18  Aligned_cols=117  Identities=19%  Similarity=0.210  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL--  389 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~l~~--  389 (442)
                      ..+..+...|..+++.|+|++|+..|+++++++|+       +..     +|.++|.++.++|+|++|+.+|++++++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            46788999999999999999999999999999999       544     9999999999999999999999999999  


Q ss_pred             -----CCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          390 -----DKKNVKAY----LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       390 -----~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                           +|++..+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+++.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                 99999999    9999999999999999999999999999998887777777654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.75  E-value=2.7e-17  Score=131.98  Aligned_cols=122  Identities=17%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ....|.....++.+|..+++.|+|++|+..|++++..+|++..+++.+|.++..+|++++|+.+|++++.++|+++.+++
T Consensus        11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   90 (142)
T 2xcb_A           11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF   90 (142)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence            34458889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++|.+|..+|++++|+++|+++++++|+++.......++...
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999998877766666544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=4.2e-17  Score=128.00  Aligned_cols=115  Identities=30%  Similarity=0.414  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK  395 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~  395 (442)
                      .+.+.++.++|..+++.|+|++|+.+|+++++++|++..++.++|.+|.++|+|++|+.+|+++++++|++       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999998865       35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +++++|.++..+|++++|+++|+++++.+|+ ++....+..++
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le  126 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE  126 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence            8899999999999999999999999999885 56666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.74  E-value=6e-17  Score=133.34  Aligned_cols=119  Identities=32%  Similarity=0.407  Sum_probs=110.6

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      .+.+..+..++.+|..+++.|+|++|+..|+++++++|++..+++++|.+|.++|++++|+.+|+++++++|++..+|++
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHH--HHHHHHHH
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA--SLSADRLR  438 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~  438 (442)
                      +|.+|..+|++++|+++|+++++++|++..+  ...+..++
T Consensus        85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999884  44444444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.73  E-value=6.9e-17  Score=132.68  Aligned_cols=119  Identities=26%  Similarity=0.368  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADCT  384 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~  384 (442)
                      ...+..+...|..+++.|+|++|+..|++++++                  +|.+..+++++|.||.++|+|++|+.+|+
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            457889999999999999999999999999999                  77778999999999999999999999999


Q ss_pred             HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHhhh
Q 013459          385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRLRKVF  441 (442)
Q Consensus       385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~  441 (442)
                      ++++++|.+..+++.+|.+|..+|++++|+..|+++++++|++. .+...+..+++.+
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999 7788888877543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.69  E-value=2.7e-16  Score=158.46  Aligned_cols=119  Identities=21%  Similarity=0.177  Sum_probs=114.2

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      +|+.+.+++++|.++.+.|++++|+..|+++++++|++..+++++|.++.++|++++|++.|+++++++|++.++++++|
T Consensus        39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg  118 (723)
T 4gyw_A           39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA  118 (723)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      .+|.++|++++|+++|+++++++|++..++.+++.+...
T Consensus       119 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A          119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence            999999999999999999999999999999999887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.68  E-value=6.1e-16  Score=155.92  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=115.3

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|+.+++++++|.++.++|+|++|+++|+++++++|++..+++++|.+|.++|++++|++.|+++++++|++.++|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      |.+|.++|++++|+++|+++++++|++..++.+++.+...
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD  123 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.68  E-value=8e-16  Score=122.22  Aligned_cols=118  Identities=32%  Similarity=0.416  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +..+..++.+|..++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..+++.+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            55688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHhh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPT-----NKRASLSADRLRKV  440 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~  440 (442)
                      ++..+|++++|+..|+++++++|+     +..+...+..+++.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998     78888887777643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.67  E-value=5.3e-16  Score=120.52  Aligned_cols=103  Identities=14%  Similarity=0.045  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..++.+|..+++.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++.+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      +|++++|+..|+++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999998754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.67  E-value=4.2e-15  Score=114.27  Aligned_cols=115  Identities=32%  Similarity=0.437  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .+..++.+|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ..+|++++|.+.++++++.+|++..++..++.+.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999988864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=1.7e-15  Score=130.72  Aligned_cols=120  Identities=18%  Similarity=0.076  Sum_probs=112.9

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-----------GSFLQAEADCTKAI  387 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~l  387 (442)
                      +...|.....++.+|.++.+.|++++|+..|+++++++|++..+++.+|.++..+           |++++|+..|++++
T Consensus        32 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  111 (217)
T 2pl2_A           32 LKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE  111 (217)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence            4456888999999999999999999999999999999999999999999999999           99999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +++|++..+++++|.++..+|++++|++.|+++++++ +++.++..++.+..
T Consensus       112 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~  162 (217)
T 2pl2_A          112 RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL  162 (217)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 99999998888764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.65  E-value=9.6e-15  Score=114.40  Aligned_cols=121  Identities=36%  Similarity=0.462  Sum_probs=114.8

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ...+.....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.65  E-value=2e-15  Score=129.46  Aligned_cols=114  Identities=21%  Similarity=0.184  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHh
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN  388 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~l~  388 (442)
                      .++.++..|..++..|+|++|+..|+++++++|++..+++.                +|.++.++|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999                99999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       389 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.65  E-value=2.6e-15  Score=118.26  Aligned_cols=122  Identities=33%  Similarity=0.470  Sum_probs=115.5

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ....+.....++.+|..++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|.+..+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   88 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT   88 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence            34457788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      .+|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=3.8e-15  Score=128.55  Aligned_cols=116  Identities=16%  Similarity=0.083  Sum_probs=112.2

Q ss_pred             chHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          322 QKQSAEIAKEKGNQAYKD-----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      .|.....++.+|.++...           |++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            478889999999999999           999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                       +++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+.
T Consensus       149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~  195 (217)
T 2pl2_A          149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL  195 (217)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence             99999999999999999999999999999999999999999888775

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=4.3e-15  Score=119.44  Aligned_cols=119  Identities=32%  Similarity=0.410  Sum_probs=113.3

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      ..+.....++.+|..++..|+|++|+..|+++++.+|++   ..++..+|.++...+++++|+..|+++++++|++..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            346678899999999999999999999999999999987   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +.+|.++..+|++++|+++|+++++++|++..++..+..+.+
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999988864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.65  E-value=3.9e-15  Score=137.42  Aligned_cols=119  Identities=27%  Similarity=0.344  Sum_probs=113.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      .|..+..++.+|..+++.|+|++|+..|+++++++|++               ..+++++|.+|.++|++++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            47788999999999999999999999999999999998               699999999999999999999999999


Q ss_pred             HhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       387 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988887653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.65  E-value=6.1e-15  Score=125.32  Aligned_cols=120  Identities=29%  Similarity=0.344  Sum_probs=113.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhcCHHHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGSFLQAEADCT  384 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~  384 (442)
                      +.+..+..+..+|..++..|+|++|+..|++++++.|+++                .++.++|.++.++|++++|+.+|+
T Consensus        33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3456778899999999999999999999999999999887                899999999999999999999999


Q ss_pred             HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++++++|.+..+++.+|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.64  E-value=6.3e-16  Score=144.63  Aligned_cols=121  Identities=11%  Similarity=-0.018  Sum_probs=114.6

Q ss_pred             ccchHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      .-+|....+|+.+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+
T Consensus       125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~  204 (382)
T 2h6f_A          125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ  204 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence            3448889999999999999997 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++|.++..+|++++|+++|+++++++|++..++.+++.+...
T Consensus       205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.64  E-value=5.7e-15  Score=115.89  Aligned_cols=114  Identities=18%  Similarity=0.201  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRR  400 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~  400 (442)
                      ..++.+|..++..|+|++|+..|+++++.+|++.   .+++.+|.++.+.|++++|+..|+++++.+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999988   799999999999999999999999999999999   8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      |.++..+|++++|++.|+++++.+|++..+......+..+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877777654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.64  E-value=5.4e-16  Score=125.49  Aligned_cols=109  Identities=18%  Similarity=0.106  Sum_probs=100.9

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCH
Q 013459          331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY  410 (442)
Q Consensus       331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~  410 (442)
                      .+|..+...|++++|+..+++++..+|+++..++.+|.+|++.|+|++|+.+|+++++++|+++.+|+.+|.+|..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            36788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          411 KEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       411 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++|+.+|+++++++|++..++..++.+..
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.63  E-value=2e-15  Score=120.03  Aligned_cols=103  Identities=19%  Similarity=0.119  Sum_probs=95.6

Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       337 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      -+.++|++|++.|+++++++|+++.+|+++|.++..++++          ++|+..|+++++++|++.++|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          407 LG-----------YYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       407 ~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|           ++++|+++|+++++++|++...+..+..+.+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            85           8999999999999999999999888877654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.62  E-value=6.7e-15  Score=141.72  Aligned_cols=120  Identities=29%  Similarity=0.437  Sum_probs=110.2

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTK  385 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~  385 (442)
                      ..+..+..++.+|..+++.|+|++|+..|+++++++|++               ..+++++|.||.++++|++|+.+|++
T Consensus       263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            346788899999999999999999999999999999998               68999999999999999999999999


Q ss_pred             HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=7e-15  Score=137.51  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=116.6

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      +.-.|....++..+|..+.+.|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            445588999999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +++|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=3.7e-14  Score=118.76  Aligned_cols=116  Identities=20%  Similarity=0.150  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.+..+++.+|.++.+.|++++|+..+.+++...|++..++..+|.++...+++++|+..+.+++.++|.+..+++.+|.
T Consensus        36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~  115 (184)
T 3vtx_A           36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL  115 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            55566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++..+|++++|++.|+++++++|++..++..++.+.
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A          116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY  151 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            666666666666666666666666666666655554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.61  E-value=2.8e-14  Score=111.82  Aligned_cols=116  Identities=33%  Similarity=0.479  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKA  396 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~  396 (442)
                      ..+..++.+|..++..|+|++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++.+.|.+       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999998877       889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++.+|.++..+|++++|.++|+++++..| +......+..+.+.
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 68888888877654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=4.7e-14  Score=115.67  Aligned_cols=115  Identities=37%  Similarity=0.611  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ...+..++.+|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|.+..+++.+|.
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      ++..+|++++|+++|+++++++|++..++..+..+
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999888666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.60  E-value=6.6e-14  Score=108.58  Aligned_cols=116  Identities=34%  Similarity=0.473  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+...++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ...|++++|.+.|+++++.+|++..++..++.+...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999998887653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.59  E-value=5.1e-14  Score=117.89  Aligned_cols=116  Identities=21%  Similarity=0.250  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      +.+.+|+++|.++.+.|+|++|+..|+++++++|++..++..+|.+|.++|++++|+..+++++..+|.+..++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +...+++++|.+.++++++++|++..++..++.+..
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            999999999999999999999999999998887754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.59  E-value=3.7e-14  Score=121.44  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             chHHHHHHHH----------------HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459          322 QKQSAEIAKE----------------KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  385 (442)
Q Consensus       322 ~~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~  385 (442)
                      .|.++..++.                +|.++.+.|+|++|+..|+++++++|++..+++.+|.++...|++++|+.+|++
T Consensus        34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  113 (208)
T 3urz_A           34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK  113 (208)
T ss_dssp             CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3666667777                999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccHHHHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHhhCCCChHH
Q 013459          386 AINLDKKNVKAYLRRGTAREM-----------------------------------LGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       386 ~l~~~p~~~~~~~~~a~~~~~-----------------------------------~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      +++++|++..+++++|.+|..                                   +|++++|+.+|+++++++|++ .+
T Consensus       114 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~  192 (208)
T 3urz_A          114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EA  192 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HH
Confidence            999999999999888877643                                   346889999999999999975 45


Q ss_pred             HHHHHHHH
Q 013459          431 SLSADRLR  438 (442)
Q Consensus       431 ~~~l~~~~  438 (442)
                      ...+.++.
T Consensus       193 ~~~l~~i~  200 (208)
T 3urz_A          193 QKTLDKIL  200 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55566554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.58  E-value=2e-14  Score=134.19  Aligned_cols=119  Identities=25%  Similarity=0.352  Sum_probs=112.2

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTK  385 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~  385 (442)
                      ....+..++.+|..+++.|+|++|+..|+++++                ++|.+..+++++|.+|.+++++++|+.+|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            345677899999999999999999999999999                7778889999999999999999999999999


Q ss_pred             HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..+..+.+.
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.58  E-value=3.5e-14  Score=123.35  Aligned_cols=120  Identities=22%  Similarity=0.238  Sum_probs=103.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--  392 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--  392 (442)
                      .|.....++.+|.++...|++++|+..|+++++++|++.       .++..+|.++..+|++++|+..|+++++++|+  
T Consensus        72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  151 (228)
T 4i17_A           72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW  151 (228)
T ss_dssp             TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred             CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence            366778888899999999999999999999999998888       66888888898999999999999999999998  


Q ss_pred             cHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          393 NVKAYLRRGTAREMLGYY---------------------------KEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~---------------------------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      +..+++++|.+|...|+.                           ++|+.+|+++++++|++..+...+..++..+
T Consensus       152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            888888899888888887                           8888999999999999988888888887543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.57  E-value=3.7e-14  Score=123.24  Aligned_cols=115  Identities=26%  Similarity=0.224  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-------HH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------KA  396 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~  396 (442)
                      .+...++.+|.+++..|+|++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++.       .+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  119 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY  119 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999999998       67


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLR  438 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~  438 (442)
                      ++.+|.++..+|++++|++.|+++++++|+  +..++..++.+.
T Consensus       120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A          120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            999999999999999999999999999999  888888887765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.56  E-value=4.9e-14  Score=117.28  Aligned_cols=117  Identities=21%  Similarity=0.289  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhcCCccHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      |.....++.+|.+++..|+|++|+..|+++++++|++..++..+|.+ +...|++  ++|+..|+++++.+|.+..+++.
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence            56778999999999999999999999999999999999999999999 8899999  99999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|.++...|++++|+..|+++++++|++......+..+.+
T Consensus       121 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          121 LASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            9999999999999999999999999998776666555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.56  E-value=1.5e-14  Score=110.09  Aligned_cols=106  Identities=18%  Similarity=0.213  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~  400 (442)
                      |.....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.  +..+++.+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4556778899999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHhhCCCCh
Q 013459          401 GTAREML-GYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       401 a~~~~~~-~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      |.++..+ |++++|++++++++...|.+.
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999 999999999999999999764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.55  E-value=8.8e-15  Score=112.88  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=90.7

Q ss_pred             hcccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013459          338 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  414 (442)
Q Consensus       338 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~  414 (442)
                      ..|++++|+.+|++++++   +|++..+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHH
Q 013459          415 EDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       415 ~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ..|+++++..|+++........+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999998876655543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.54  E-value=6e-14  Score=126.09  Aligned_cols=104  Identities=36%  Similarity=0.479  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      ..+..++.+|..++..|+|++|+..|+++++.+|++..+++++|.+|.++|++++|+.+|+++++++|++..+++++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      |..+|++++|++.|+++++++|++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999976

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.53  E-value=1.3e-14  Score=134.10  Aligned_cols=120  Identities=27%  Similarity=0.353  Sum_probs=97.5

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQAEAD  382 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~  382 (442)
                      .+.+..+..++.+|..+++.|+|++|+..|++++++.|++.                 .+++++|.||.++++|++|+.+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34466788899999999999999999999999999999876                 4899999999999999999999


Q ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       383 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..+..+.+
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988887743

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.52  E-value=1.6e-14  Score=116.41  Aligned_cols=100  Identities=10%  Similarity=0.059  Sum_probs=92.3

Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459          341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  420 (442)
                      ++-.+-..++++++++|++..+++.+|.++++.|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            33334466788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHhh
Q 013459          421 LVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       421 l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++++|+++.++..++.+...
T Consensus        97 l~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHH
T ss_pred             HhhCCCCcHHHHHHHHHHHH
Confidence            99999999999999988654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.51  E-value=1.4e-12  Score=108.51  Aligned_cols=118  Identities=18%  Similarity=0.186  Sum_probs=110.1

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  117 (186)
T 3as5_A           38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG  117 (186)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++...|++++|++.++++++..|++..++..++.+..
T Consensus       118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  155 (186)
T 3as5_A          118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE  155 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            99999999999999999999999999988888877653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.50  E-value=4.3e-13  Score=129.79  Aligned_cols=115  Identities=19%  Similarity=0.175  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHh
Q 013459          326 AEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFLQAEADCTKAIN  388 (442)
Q Consensus       326 ~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~~l~  388 (442)
                      ...+..+|.++...         |++++|+..|+++++++|++..+++++|.+|..+        |++++|+..|+++++
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~  249 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK  249 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            58899999999999         9999999999999999999999999999999999        999999999999999


Q ss_pred             cCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          389 LDK---KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       389 ~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++|   .++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus       250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF  304 (474)
T ss_dssp             HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999   9999999999999999999999999999999999999998888877543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.50  E-value=4.9e-14  Score=136.23  Aligned_cols=116  Identities=37%  Similarity=0.607  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +..+..++.+|..+++.|+|++|++.|+++++++|++..+++++|.+|.++|++++|+..|+++++++|++..+++++|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +|..+|++++|+++|+++++++|++..++..++.+.
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999998888773

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.4e-12  Score=114.97  Aligned_cols=116  Identities=34%  Similarity=0.450  Sum_probs=111.5

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....+..+|..++..|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++.+|++..+++.+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLE------PTNKRASLSADRL  437 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~  437 (442)
                      .++..+|++++|.++|+++++++      |++..++..+.++
T Consensus       215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999      9999888887765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.48  E-value=1.2e-12  Score=116.65  Aligned_cols=114  Identities=19%  Similarity=0.134  Sum_probs=107.7

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|.....++.+|.+++..|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|.+..+++.+
T Consensus        38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  117 (275)
T 1xnf_A           38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  117 (275)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      |.++..+|++++|++.|+++++++|++......+
T Consensus       118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (275)
T 1xnf_A          118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  151 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999999998554433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.47  E-value=7.5e-13  Score=131.37  Aligned_cols=118  Identities=12%  Similarity=-0.008  Sum_probs=89.1

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....++.+|..+...|+|++|++.|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..+++++|
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   98 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG   98 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            35566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .+|..+|++++|+++|+++++++|++..++..++.+..
T Consensus        99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  136 (568)
T 2vsy_A           99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR  136 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            77777777777777777777777777777776666653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.47  E-value=8.4e-14  Score=140.81  Aligned_cols=115  Identities=11%  Similarity=-0.028  Sum_probs=81.6

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      +|.+..+++.+|.+++..|+|++|+..|+++++++|++..+++++|.++.++|++++ +.+|+++++++|++..+++++|
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            355666677777777777777777777777777777777777777777777777777 7777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      .++..+|++++|++.|+++++++|++..++..++.+
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            777777777777777777777777776666666555

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.46  E-value=2.8e-12  Score=100.62  Aligned_cols=104  Identities=34%  Similarity=0.485  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.....++.+|..+...|++++|+..++++++..|++...+..+|.++...|++++|++.++++++..|.+..+++.+|.
T Consensus        32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  111 (136)
T 2fo7_A           32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN  111 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            44455666667777777777777777777777666666666667777777777777777777777666666666666777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ++...|++++|.+.++++++.+|+
T Consensus       112 ~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          112 AYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHccHHHHHHHHHHHHccCCC
Confidence            777777777777777777666664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.45  E-value=2.2e-13  Score=137.73  Aligned_cols=120  Identities=16%  Similarity=0.077  Sum_probs=114.1

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ...|.....++.+|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..|+++++++|++..++++
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            34477888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +|.++.++|++++ +++|+++++++|++..++.+++.+...
T Consensus       507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA  546 (681)
T ss_dssp             HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999887643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.45  E-value=1.6e-12  Score=111.31  Aligned_cols=105  Identities=17%  Similarity=0.130  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----------
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----------  394 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----------  394 (442)
                      ....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+..|++++++.|.+.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            4679999999999999999999999999999999999999999999999999999999999999887766          


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          395 ------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       395 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                            .+++++|.++..+|++++|+++|+++++++|++..
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                  99999999999999999999999999999997654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.44  E-value=2.1e-12  Score=114.64  Aligned_cols=116  Identities=17%  Similarity=0.116  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------hcCHHHHHHHHHHHHhcCC
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLE--------SGSFLQAEADCTKAINLDK  391 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~~l~~~p  391 (442)
                      +....+++.+|.++++.|+|++|+..|+++++.+|++   ..+++.+|.++..        .|++++|+..|+++++.+|
T Consensus        49 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  128 (261)
T 3qky_A           49 EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP  128 (261)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred             cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence            3348899999999999999999999999999998855   5789999999999        9999999999999999999


Q ss_pred             ccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHH
Q 013459          392 KNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLR  438 (442)
Q Consensus       392 ~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~  438 (442)
                      ++..+.                 +.+|.+|...|++++|+..|+++++..|++   ..++..++.+.
T Consensus       129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  195 (261)
T 3qky_A          129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY  195 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            886655                 889999999999999999999999999985   44666665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.44  E-value=1.5e-12  Score=117.39  Aligned_cols=117  Identities=13%  Similarity=0.119  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHH-----------------------
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE-----------------------  380 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~-----------------------  380 (442)
                      .....++.+|..+...|++++|+..|+++++.+|++..+++.+|.++.+.|++++|+                       
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            445566777777777777777777777777777777777777777777777766665                       


Q ss_pred             -----------HHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHhh
Q 013459          381 -----------ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRKV  440 (442)
Q Consensus       381 -----------~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~  440 (442)
                                 ..|++++.++|++..+++++|.++...|++++|++.|+++++.+|++  ..++..+..+...
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence                       44555677789999999999999999999999999999999999998  7788888777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=2e-12  Score=125.05  Aligned_cols=117  Identities=13%  Similarity=0.110  Sum_probs=111.9

Q ss_pred             chHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .+..+..++.+|..++..|+| ++|+.+|+++++++|++..+++.+|.+|.++|++++|+.+|+++++++|+ ..+++++
T Consensus        98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l  176 (474)
T 4abn_A           98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL  176 (474)
T ss_dssp             CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence            356789999999999999999 99999999999999999999999999999999999999999999999998 7999999


Q ss_pred             HHHHHHc---------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          401 GTAREML---------GYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       401 a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |.++..+         |++++|++.|+++++++|++..++..++.+..
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  224 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL  224 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999         99999999999999999999999999888764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=4e-12  Score=111.00  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|.
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  167 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM  167 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            44556666667777777777777777777777777666666777777777777777777777777766666666666777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++...|++++|++.|+++++.+|++..++..++.+.
T Consensus       168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            777777777777777777776666666666655554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=2.3e-12  Score=114.34  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=104.3

Q ss_pred             chHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcCH
Q 013459          322 QKQSAEIAKEKGNQAYK--------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAAYLESGSF  376 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~~~~~~~~~~  376 (442)
                      .+....+++.+|.+++.        .|++++|+..|+++++.+|++..+.                 +.+|.+|.+.|++
T Consensus        85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  164 (261)
T 3qky_A           85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY  164 (261)
T ss_dssp             CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence            35667889999999999        9999999999999999999986665                 8889999999999


Q ss_pred             HHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          377 LQAEADCTKAINLDKK---NVKAYLRRGTAREML----------GYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       377 ~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++|+..|+++++.+|+   ..++++.+|.+|..+          |++++|++.|+++++.+|+++.+......+.
T Consensus       165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  239 (261)
T 3qky_A          165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT  239 (261)
T ss_dssp             HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            9999999999999998   567999999999987          9999999999999999999976655444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=1.8e-12  Score=122.08  Aligned_cols=119  Identities=19%  Similarity=0.125  Sum_probs=110.8

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....+..+|..+.+.|++++|+..|+++++++|++..++..++.++.+.|++++|+..|+++++++|++..+++.+|
T Consensus       267 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  346 (388)
T 1w3b_A          267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA  346 (388)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            36667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      .++.+.|++++|++.|+++++++|++..++..++.+...
T Consensus       347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~  385 (388)
T 1w3b_A          347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence            999999999999999999999999999999999887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.43  E-value=8e-13  Score=103.16  Aligned_cols=90  Identities=17%  Similarity=0.223  Sum_probs=83.6

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       351 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      ++..++|+....+.++|..+++.|+|++|+..|+++++++|.+..+|+++|.+|..+|++++|+..|+++++++|++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 013459          431 SLSADRLRKV  440 (442)
Q Consensus       431 ~~~l~~~~~~  440 (442)
                      +..++.+...
T Consensus        84 ~~~lg~~~~~   93 (126)
T 4gco_A           84 YIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.42  E-value=5.3e-12  Score=110.23  Aligned_cols=117  Identities=21%  Similarity=0.199  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..+++.+|
T Consensus        53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  132 (243)
T 2q7f_A           53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG  132 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .++...|++++|++.++++++..|++..++..++.+.
T Consensus       133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A          133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999888887765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=4.3e-12  Score=105.61  Aligned_cols=117  Identities=13%  Similarity=0.104  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ......++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++...|++++|.+.++++++.+|++..++..++.+..
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence            9999999999999999999999999998888877653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=4.5e-12  Score=111.64  Aligned_cols=115  Identities=21%  Similarity=0.248  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHhcCHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK--------------------------LNGNNATYYSNRAAAYLESGSFLQ  378 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~  378 (442)
                      ....++.+|.++...|++++|+..|+++++                          .+|++..++..+|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            378999999999999999999999999999                          666778899999999999999999


Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       379 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |+..|+++++.+|.+..+++.+|.++...|++++|+++|+++++.+|++..++..++.+..
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  218 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI  218 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988887754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=5.2e-12  Score=108.18  Aligned_cols=112  Identities=23%  Similarity=0.242  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .....++.+|..++..|+|++|+..|++++  +| +..+++++|.++...|++++|+..|+++++++|.+..+++++|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            455678999999999999999999999996  33 788999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHH
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNK----------------RASLSADRLR  438 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~l~~~~  438 (442)
                      +..+|++++|+++|++++++.|++.                .++..++.+.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY  131 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence            9999999999999999999999877                7777777664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.40  E-value=3.4e-12  Score=120.12  Aligned_cols=115  Identities=23%  Similarity=0.173  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |..+..++.+|..+.+.|++++|+..|+++++++|++..++..+|.++.+.|++++|+..|+++++++|++..++..+|.
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  143 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN  143 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            55566666667777777777777777777666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      ++..+|++++|++.|+++++.+|++..++..++.+
T Consensus       144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (388)
T 1w3b_A          144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV  178 (388)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            66666666666666666666666665555555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.40  E-value=5.7e-12  Score=109.15  Aligned_cols=116  Identities=13%  Similarity=0.020  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH------------------hcCHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLE------------------SGSFLQAEA  381 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~------------------~~~~~~A~~  381 (442)
                      +....+++.+|.++++.|+|++|+..|+++++.+|++..   +++.+|.++..                  .|++++|+.
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            445678999999999999999999999999999999864   78999999887                  578999999


Q ss_pred             HHHHHHhcCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHH
Q 013459          382 DCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRLR  438 (442)
Q Consensus       382 ~~~~~l~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~  438 (442)
                      .|+++++.+|++..++                 +.+|.+|.+.|++++|+..|+++++..|+++   +++..++.+.
T Consensus       118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  194 (225)
T 2yhc_A          118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY  194 (225)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence            9999999999986544                 6789999999999999999999999999987   4555555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=7.3e-12  Score=107.83  Aligned_cols=119  Identities=15%  Similarity=0.032  Sum_probs=109.7

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHh--cCCccHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LDKKNVKAY  397 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~  397 (442)
                      ..|.....+..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|+..++++++  .+|.+..++
T Consensus        37 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (225)
T 2vq2_A           37 SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN  116 (225)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred             hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence            34667889999999999999999999999999999999999999999999999 999999999999999  667778999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +.+|.++...|++++|++.|+++++..|++..++..++.+..
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  158 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM  158 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            999999999999999999999999999999999888887753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.9e-13  Score=103.95  Aligned_cols=95  Identities=24%  Similarity=0.350  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYL  398 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~  398 (442)
                      ++..++.+|..++..|+|++|+..|+++++++|++..+++++|.++.++|++++|+..|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999998      89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSY  419 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~  419 (442)
                      .+|.++..+|++++|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988887766554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=7.2e-12  Score=107.86  Aligned_cols=118  Identities=15%  Similarity=0.108  Sum_probs=108.3

Q ss_pred             chHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      .|.....+..+|.++... |++++|+..|+++++  .+|.+..++..+|.++...|++++|+..|+++++.+|.+..+++
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  151 (225)
T 2vq2_A           72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK  151 (225)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence            466778899999999999 999999999999999  66777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHh
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEP-TNKRASLSADRLRK  439 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~  439 (442)
                      .+|.++...|++++|.+.++++++.+| ++...+..+..+..
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK  193 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999 99888876666543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.40  E-value=3.1e-12  Score=110.82  Aligned_cols=111  Identities=16%  Similarity=0.150  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYL  398 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~  398 (442)
                      .+..++.+|..+++.|+|++|+..|+++++.+|+++   .+++.+|.++.++|++++|+..|+++++.+|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            356789999999999999999999999999998864   78999999999999999999999999999998864   899


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          399 RRGTAREM------------------LGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       399 ~~a~~~~~------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      .+|.++..                  .|++++|+..|+++++.+|++..+...+.
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~  137 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK  137 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence            99999986                  57899999999999999999987765443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.40  E-value=2.3e-12  Score=120.26  Aligned_cols=115  Identities=16%  Similarity=0.206  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .+..++.+|..+...|++++|+..|+++++++|++..++..+|.++.+.|++++|+..|+++++++|++..+++++|.+|
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC------------hHHHHHHHHHHh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTN------------KRASLSADRLRK  439 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~  439 (442)
                      ..+|++++|+.+|+++++++|++            ..++..++.+..
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS  338 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence            99999999999999999999883            566777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.40  E-value=9.8e-12  Score=112.11  Aligned_cols=103  Identities=14%  Similarity=0.071  Sum_probs=80.9

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH-
Q 013459          334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE-  412 (442)
Q Consensus       334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~-  412 (442)
                      ..+...|++++|+..|+++++.+|+++.+++++|.++.++|++++|+..|+++++++|+++++++++|.++..+|++++ 
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence            3334557888888888888888888888888888888888888888888888888888888888888888888888765 


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHH
Q 013459          413 AIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       413 A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      +.++++++++++|+++.+.....+
T Consensus       254 a~~~~~~~~~~~P~~~~~~d~~~~  277 (291)
T 3mkr_A          254 TNRYLSQLKDAHRSHPFIKEYRAK  277 (291)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHH
Confidence            467778888888888877655443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=4.4e-12  Score=118.20  Aligned_cols=116  Identities=17%  Similarity=0.195  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....+..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.+|
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC-----------hHHHHHHHHHHhh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTN-----------KRASLSADRLRKV  440 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~-----------~~~~~~l~~~~~~  440 (442)
                      ..+|++++|+.+|++++++.|++           ..++..++.+...
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM  342 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence            99999999999999999999988           7888888777643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.39  E-value=5.6e-12  Score=98.83  Aligned_cols=112  Identities=30%  Similarity=0.425  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..++.+|..+...|++++|+..|+++++.+|++...+..++.++...|++++|+..+++++..+|.+...++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .|++++|++.++++++..|++...+..++.+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  113 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAY  113 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999999999999999998888877664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.39  E-value=9.4e-12  Score=109.46  Aligned_cols=116  Identities=19%  Similarity=0.154  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      |.....+..+|..+...|++++|+..|+++++  ..|.+..++..+|.++...|++++|+..|+++++.+|.+..+++.+
T Consensus       102 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  181 (252)
T 2ho1_A          102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM  181 (252)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            44455666666666666666666666666666  5555566666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      |.++...|++++|...++++++..|++...+..+..+.
T Consensus       182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  219 (252)
T 2ho1_A          182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA  219 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            66666666666666666666666666666655555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.39  E-value=1.6e-11  Score=107.94  Aligned_cols=114  Identities=11%  Similarity=0.033  Sum_probs=108.7

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|.....+..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  215 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG  215 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      +.++...|++++|.++++++++++|++..+...+
T Consensus       216 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          216 IRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999999999887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.39  E-value=5.8e-12  Score=112.12  Aligned_cols=115  Identities=21%  Similarity=0.165  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|.+..+++.+|...
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY  152 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999444


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ...+++++|++.|+++++++|++..++..++.+..
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  187 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA  187 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            45569999999999999999999988888877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.39  E-value=1.2e-11  Score=111.60  Aligned_cols=117  Identities=9%  Similarity=-0.074  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA--AAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      |.+...+..+|.++.+.|++++|+..|+++++.+|++.......+  .++...|++++|+..|+++++.+|+++.+++++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            567789999999999999999999999999999999864444333  333345899999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |.++.++|++++|++.|+++++++|+++.++.++..+..
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999988886653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.38  E-value=8.9e-13  Score=106.10  Aligned_cols=94  Identities=19%  Similarity=0.224  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          346 ISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       346 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      -..|+++++++|++..+++.+|.++...|++++|+..|++++.++|.++.+|+++|.++..+|++++|+++|+++++++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHh
Q 013459          426 TNKRASLSADRLRK  439 (442)
Q Consensus       426 ~~~~~~~~l~~~~~  439 (442)
                      +++.++..++.+..
T Consensus        87 ~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           87 XEPRFPFHAAECLL  100 (148)
T ss_dssp             TCTHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHH
Confidence            99999999988764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.38  E-value=4.8e-12  Score=115.85  Aligned_cols=118  Identities=16%  Similarity=0.235  Sum_probs=110.8

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  392 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  392 (442)
                      .|.....++.+|..+...|++++|+..|+++++..         |....++..+|.++.+.|++++|+..|+++++++|+
T Consensus       189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            36678899999999999999999999999999986         667789999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +..+++.+|.++..+|++++|.++|+++++++|++..++..++.+..
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988763

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=5.6e-12  Score=117.57  Aligned_cols=113  Identities=17%  Similarity=0.204  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ..+..+|..+...|++++|+.+|+++++++|+  ++.++..+|.++...|++++|+..|+++++++|++..+|+.+|.+|
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  257 (365)
T 4eqf_A          178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL  257 (365)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34455699999999999999999999999999  8999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ..+|++++|++.|+++++++|++..++..++.+..
T Consensus       258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999888764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.37  E-value=6.4e-12  Score=96.24  Aligned_cols=85  Identities=14%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459          343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       343 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                      ++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC
Q 013459          423 LEPTN  427 (442)
Q Consensus       423 ~~p~~  427 (442)
                      +.|++
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            98853

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.37  E-value=8.6e-12  Score=123.73  Aligned_cols=110  Identities=13%  Similarity=-0.001  Sum_probs=105.1

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....++.+|.++...|++++|++.|+++++++|++..+++++|.++.++|++++|++.|+++++++|++..+++++|
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  132 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL  132 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc---CCHHHHHHHHHHHHhhCCCChHHH
Q 013459          402 TAREML---GYYKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       402 ~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      .++..+   |++++|.+.|+++++.+|++...+
T Consensus       133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  165 (568)
T 2vsy_A          133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF  165 (568)
T ss_dssp             HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred             HHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence            999999   999999999999999999875544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.36  E-value=3.1e-11  Score=111.64  Aligned_cols=113  Identities=18%  Similarity=0.269  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT----YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....|..+++.|++++|+..|+++++..|++..    ++..+|.++.+.|++++|+..|+++++.+|++..+++.+|.++
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345699999999999999999999999999874    4667999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      ...|++++|.++|+++++++|++..++..+..+...+
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.36  E-value=1.1e-11  Score=114.65  Aligned_cols=112  Identities=29%  Similarity=0.293  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      +++.++.+|..++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHH
Q 013459          405 EMLGYYKEAIEDFSYALVLEP---TNKRASLSADR  436 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~  436 (442)
                      ...|++++|++.|+++++.+|   ++..++..+..
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            999999999999999999999   88888877643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.36  E-value=1.3e-11  Score=118.50  Aligned_cols=118  Identities=27%  Similarity=0.288  Sum_probs=109.1

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ...+|.++..++.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++
T Consensus        19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   98 (450)
T 2y4t_A           19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL   98 (450)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHH
Q 013459          399 RRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADR  436 (442)
Q Consensus       399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~  436 (442)
                      .+|.+|..+|++++|++.|+++++++|++.   .++..+..
T Consensus        99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A           99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999999999999999998   77665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.36  E-value=1.3e-11  Score=112.80  Aligned_cols=117  Identities=12%  Similarity=0.124  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.....+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..+++.+|.
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  248 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV  248 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC------------ChHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPT------------NKRASLSADRLRK  439 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~  439 (442)
                      ++..+|++++|.+.|+++++++|+            +..++..++.+..
T Consensus       249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (327)
T 3cv0_A          249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN  297 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence            999999999999999999999999            7788887777654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.35  E-value=6.8e-12  Score=111.68  Aligned_cols=117  Identities=13%  Similarity=0.069  Sum_probs=104.8

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      ..|.....++.+|.+++..|+|++|+..|+++++ .|++    ..++..+|.++...|++++|+..|+++++++|.+..+
T Consensus        32 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  110 (272)
T 3u4t_A           32 KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM  110 (272)
T ss_dssp             TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred             hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH
Confidence            3466677899999999999999999999999999 4443    3458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH-HHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD-RLR  438 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~  438 (442)
                      +..+|.++..+|++++|+++|+++++++|++..++..++ .+.
T Consensus       111 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A          111 YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888 543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.35  E-value=6.4e-12  Score=104.31  Aligned_cols=120  Identities=12%  Similarity=0.028  Sum_probs=103.2

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-ESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      ....|.+..+++.+|.++...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++++|++..++
T Consensus        33 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~  111 (176)
T 2r5s_A           33 SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA  111 (176)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence            345588899999999999999999999999999999999 8877666665433 33445568999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRK  439 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~  439 (442)
                      +.+|.++...|++++|+..|+++++.+|+.  ..++..++.+..
T Consensus       112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A          112 CELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence            999999999999999999999999999986  457877777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.35  E-value=1.6e-11  Score=112.33  Aligned_cols=116  Identities=16%  Similarity=0.024  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      |.....++.+|..+...| ++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|++..+++.+|
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  166 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG  166 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            556678888888888888 8888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .++...|++++|++.++++++.+|++..++..++.+.
T Consensus       167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  203 (330)
T 3hym_B          167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVA  203 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            8888888888888888888888888888877777664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.34  E-value=1.7e-11  Score=89.25  Aligned_cols=86  Identities=34%  Similarity=0.466  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +.....++.+|..++..++|++|+..|+++++.+|++..+++.+|.++.+.|++++|+..|+++++++|++..++.++|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcC
Q 013459          403 AREMLG  408 (442)
Q Consensus       403 ~~~~~~  408 (442)
                      ++..+|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            877654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.33  E-value=4.3e-12  Score=105.37  Aligned_cols=105  Identities=14%  Similarity=0.085  Sum_probs=94.9

Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHcCCH--H
Q 013459          335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA-REMLGYY--K  411 (442)
Q Consensus       335 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~-~~~~~~~--~  411 (442)
                      .+...|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++.+|.+ +...|++  +
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            356789999999999999999999999999999999999999999999999999999999999999999 8899999  9


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          412 EAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       412 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|++.|+++++.+|++..++..++.+..
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~  126 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAF  126 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999999999988887753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.31  E-value=5.4e-12  Score=100.71  Aligned_cols=93  Identities=17%  Similarity=0.264  Sum_probs=85.7

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       347 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ..|+++++++|++...++.+|.++++.|++++|+..|++++.++|++..+|+.+|.++..+|++++|+++|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHh
Q 013459          427 NKRASLSADRLRK  439 (442)
Q Consensus       427 ~~~~~~~l~~~~~  439 (442)
                      ++.++..++.+..
T Consensus        85 ~~~~~~~lg~~~~   97 (142)
T 2xcb_A           85 EPRFPFHAAECHL   97 (142)
T ss_dssp             CTHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH
Confidence            9999998888764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.29  E-value=6e-11  Score=113.76  Aligned_cols=110  Identities=18%  Similarity=0.270  Sum_probs=103.2

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      ..+|..+...|++++|+..|++++++.|++.    ..+..+|.++.+.|++++|+..++++++++|++..+|+.+|.++.
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4449999999999999999999999999985    478899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          406 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ..|++++|+..|+++++++|++..++..++.+..
T Consensus       341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  374 (450)
T 2y4t_A          341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR  374 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.29  E-value=2.9e-11  Score=111.39  Aligned_cols=100  Identities=19%  Similarity=0.123  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .....++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+
T Consensus       194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHH-HHHHHHHHhh
Q 013459          404 REMLGYYKEA-IEDFSYALVL  423 (442)
Q Consensus       404 ~~~~~~~~~A-~~~~~~~l~~  423 (442)
                      +..++++++| .+.|++++..
T Consensus       274 ~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998 4567777654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.28  E-value=1.2e-10  Score=108.51  Aligned_cols=100  Identities=16%  Similarity=0.192  Sum_probs=83.7

Q ss_pred             ccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013459          340 KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF  417 (442)
Q Consensus       340 ~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~  417 (442)
                      |++++|+..|+++++.+|+  +..++..+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444444444445555566  67888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHh
Q 013459          418 SYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       418 ~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +++++++|++..++..++.+..
T Consensus       275 ~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          275 RRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999998888887754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.28  E-value=7.6e-11  Score=104.90  Aligned_cols=109  Identities=17%  Similarity=0.075  Sum_probs=96.8

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-------
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------  394 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------  394 (442)
                      .|.....+..+|.++...|++++|+.+|+++++++|++..++..+|.++...|++++|+..|+++++++|++.       
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A           73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            3567788999999999999999999999999999999999999999999999999999999999998887764       


Q ss_pred             ---------------------------------------------------------------HHHHHHHHHHHHcCCHH
Q 013459          395 ---------------------------------------------------------------KAYLRRGTAREMLGYYK  411 (442)
Q Consensus       395 ---------------------------------------------------------------~~~~~~a~~~~~~~~~~  411 (442)
                                                                                     .+++.+|.++..+|+++
T Consensus       153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  232 (275)
T 1xnf_A          153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  232 (275)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence                                                                           56777888899999999


Q ss_pred             HHHHHHHHHHhhCCCChHH
Q 013459          412 EAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       412 ~A~~~~~~~l~~~p~~~~~  430 (442)
                      +|..+|+++++++|++...
T Consensus       233 ~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          233 SATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             HHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHHHhCCchhHHH
Confidence            9999999999999876653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.28  E-value=5.8e-12  Score=104.56  Aligned_cols=116  Identities=9%  Similarity=-0.027  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +...+.++.+|..++..|++++|+..|+++++.+|++..+++.+|.++.+.|++++|+..|++++..+| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            344556889999999999999999999999999999999999999999999999999999999999999 8777666665


Q ss_pred             HH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          403 AR-EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       403 ~~-~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +. ...++..+|++.|+++++++|++..++..++.+..
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            53 33344456899999999999999999999888754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.27  E-value=5.8e-11  Score=107.18  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcc--
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN--  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~--  393 (442)
                      +..+..+.++|.++...|+|++|+.+|++++++.++.      ..++.++|.+|... |++++|+.+|++++++.|.+  
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~  153 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence            4567899999999999999999999999999997654      46889999999996 99999999999999998754  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                          ..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence                467899999999999999999999999999998764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.27  E-value=8.4e-12  Score=92.66  Aligned_cols=92  Identities=12%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  407 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  407 (442)
                      .+..|..++..|+|++|+..|+++++.+|++.. +++.+|.++..+|++++|+..|+++++++|++..++++        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            357899999999999999999999999999999 99999999999999999999999999999999988754        


Q ss_pred             CCHHHHHHHHHHHHhhCCCCh
Q 013459          408 GYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       408 ~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      +.+.++...|+++...+|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            567788888888888887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.26  E-value=6.7e-11  Score=117.85  Aligned_cols=116  Identities=18%  Similarity=0.149  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      |.+...+..++..+.+.|++++|++.|+++++.      +|++ ..++..++.++.+.|++++|+..|+++++++|++..
T Consensus       472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            445667888888888888888888888888877      4544 677888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +++.++.+|...|++++|.+.|+++++++|++..++..++.+.
T Consensus       552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            8888888888888888888888888888888888888777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.26  E-value=7e-11  Score=96.48  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=94.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....++.+|.++...|+|++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++++|.+..++..++
T Consensus        43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  122 (166)
T 1a17_A           43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  122 (166)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999998885555


Q ss_pred             HH--HHHcCCHHHHHHHHHHHHhhC
Q 013459          402 TA--REMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       402 ~~--~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      .+  +...|++++|++.+++...+.
T Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          123 ECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccchHHHh
Confidence            55  888999999999999876553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.24  E-value=1e-10  Score=114.04  Aligned_cols=107  Identities=32%  Similarity=0.472  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ...+..++.+|..+++.|+|++|+..|+++++.+| +..++..+|.++.+.|++++|+..|+++++++|++..+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            45788999999999999999999999999999999 68999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      ++..+|++++|++.|+++++.+|.+...
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~  109 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDAS  109 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence            9999999999999999999999976543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.23  E-value=3.3e-11  Score=89.65  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          356 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       356 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      +|+++.+++.+|.++.+.|++++|+..|+++++++|++..+|+.+|.+|..+|++++|++.|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            4555556666666666666666666666666666666666666666666666666666666666665544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=1.2e-10  Score=103.84  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=104.5

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  389 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----  389 (442)
                      .+.....+..+|.+++..|+|++|+..|++++++.        |....++..+|.++...|++++|+..|++++.+    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999883        555778999999999999999999999999988    


Q ss_pred             ----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHH
Q 013459          390 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL--------EPTNKRASLSADRLR  438 (442)
Q Consensus       390 ----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~  438 (442)
                          +|....+++++|.++..+|++++|+.+|++++++        .|....++..++.+.
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  179 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY  179 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence                4777889999999999999999999999999998        666666777776664

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.22  E-value=1.7e-10  Score=104.89  Aligned_cols=111  Identities=10%  Similarity=-0.117  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      +|..++..+.+.|++++|...|+++++..|.+..++...+....+ .|++++|++.|+++++.+|++..+|..++..+..
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            677777777777777777777777777777766666655555433 5777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHhh---CC-CChHHHHHHHHHH
Q 013459          407 LGYYKEAIEDFSYALVL---EP-TNKRASLSADRLR  438 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~---~p-~~~~~~~~l~~~~  438 (442)
                      +|++++|...|+++++.   .| +...++..+..+.
T Consensus       216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~  251 (308)
T 2ond_A          216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE  251 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            77777777777777774   34 2555666555544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.21  E-value=1.3e-10  Score=113.96  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      ...+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|.+..+++.+|.++.
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          406 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ..|++++|++.|+++++.+|++..++..++.+..
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            9999999999999999999999988888877653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.21  E-value=9.4e-11  Score=107.01  Aligned_cols=111  Identities=13%  Similarity=0.017  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|.+..+++.+|.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      +...|++++|++.++++++.+|++...+..+
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  129 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVN  129 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            9999999999999999999999887766544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.21  E-value=8.5e-11  Score=105.69  Aligned_cols=121  Identities=11%  Similarity=-0.076  Sum_probs=112.8

Q ss_pred             cccchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHh---cCHHHHHHHHHHHHhc
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEADCTKAINL  389 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~l~~  389 (442)
                      +.-+|+...+|+.++.++...+  ++++++..+++++..+|++..+|+.++.++    ..+   +++++++..++++++.
T Consensus        60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A           60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS  139 (306)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred             HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence            4455889999999999999999  999999999999999999999999999999    777   7899999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          390 DKKNVKAYLRRGTAREMLGYYK--EAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       390 ~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|.|..+|+..+.++..++.++  ++++.++++++.+|.|..+|.+...+..
T Consensus       140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF  191 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999998  9999999999999999999998887653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.21  E-value=2e-10  Score=90.16  Aligned_cols=102  Identities=14%  Similarity=0.054  Sum_probs=91.9

Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHHcCCHHHHH
Q 013459          340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAI  414 (442)
Q Consensus       340 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~~~~~~A~  414 (442)
                      .....+.+.|.+.++.++.+.++.+++|.++.+.+   +.++++..++.+++.+ | ++.+++|++|..++++++|++|.
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34567778888888888999999999999999988   6779999999999998 7 56899999999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          415 EDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       415 ~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      ++++++++++|+|..+......+++.+
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999888877653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.21  E-value=1.2e-10  Score=105.07  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-
Q 013459          324 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-  395 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-  395 (442)
                      ..+..+..+|.++... |++++|+.+|++++++.|.+      ..++.++|.++.++|++++|+.+|++++++.|++.. 
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            4567899999999996 99999999999999998754      467899999999999999999999999999887643 


Q ss_pred             ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          396 ------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       396 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                            +++++|.++..+|++++|+.+|+++++++|+....
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                  67899999999999999999999999999987654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=2e-10  Score=104.45  Aligned_cols=117  Identities=11%  Similarity=-0.001  Sum_probs=94.1

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .|.....|..+|..+...|++++|...|+++++++|++.. +|..++.++.+.|++++|+..|+++++.+|.+...|...
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4667778888888888888888888888888888888776 788888888888888888888888888888877777666


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          401 GTAREM-LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       401 a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +..... .|++++|.+.|+++++.+|++..++..+..+.
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  213 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            555433 68888888888888888888888887777665

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.20  E-value=1.8e-10  Score=83.63  Aligned_cols=83  Identities=33%  Similarity=0.435  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      .+..+++.+|.++...+++++|+.+|+++++++|.+..+++.+|.++...|++++|+++|+++++++|++..++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             Hhh
Q 013459          438 RKV  440 (442)
Q Consensus       438 ~~~  440 (442)
                      ...
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.20  E-value=2.9e-10  Score=113.17  Aligned_cols=117  Identities=15%  Similarity=0.045  Sum_probs=107.3

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....+..++..+.+.|++++|++.|+++++++|++..++..++.+|.+.|++++|++.|+++++.+|++..++..++
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  448 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG  448 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .+|.+.|++++|++.|+++++.+|++...+..+..+.
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA  485 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            9999999999999999999999999998888777664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.20  E-value=2.1e-10  Score=91.09  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHhcccH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----------CHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----------SFLQAEA  381 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~~~A~~  381 (442)
                      |.+++.|+++|.++...+++          ++|+..|+++++++|++..+|+++|.+|..+|           ++++|++
T Consensus        33 P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~  112 (158)
T 1zu2_A           33 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ  112 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHH
Confidence            78999999999999999875          59999999999999999999999999999885           8999999


Q ss_pred             HHHHHHhcCCccHHH
Q 013459          382 DCTKAINLDKKNVKA  396 (442)
Q Consensus       382 ~~~~~l~~~p~~~~~  396 (442)
                      +|+++++++|++..+
T Consensus       113 ~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A          113 FFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhCCCCHHH
Confidence            999999999998643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.9e-10  Score=89.45  Aligned_cols=83  Identities=20%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      .....+..+|..+++.|++++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhh
Q 013459          438 RKV  440 (442)
Q Consensus       438 ~~~  440 (442)
                      ...
T Consensus        82 ~~~   84 (126)
T 3upv_A           82 QIA   84 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.18  E-value=3.4e-10  Score=109.27  Aligned_cols=115  Identities=17%  Similarity=0.065  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---  390 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---  390 (442)
                      +..+..++.+|.+++..|+|++|++.|++++++         +|.....|.++|.+|..+|++++|+.+|++++++.   
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            344566777888888888888888888888775         45566777888888888888888888888887653   


Q ss_pred             -----CccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          391 -----KKNVKAYLRRGTAREMLG--YYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       391 -----p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                           +..+.++.++|.++...+  +|++|+.+|+++++++|+++.++..++.+
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~  181 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA  181 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                 344667777777766544  57888888888888888888777666554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.17  E-value=1.6e-10  Score=88.67  Aligned_cols=79  Identities=16%  Similarity=0.040  Sum_probs=74.4

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .|.....++.+|.+++..|+|++|+..|+++++++|++..+++.+|.++.++|++++|+..|++++..+|+++......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999999999999999998765433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.17  E-value=6e-10  Score=97.91  Aligned_cols=114  Identities=15%  Similarity=0.069  Sum_probs=99.3

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-cHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLD--KK-NVK  395 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~  395 (442)
                      ..|... ..+.+|..+++.++|++|+.+|++++...+..  ..+++.+|.++.++|++++|+.+|++++...  |. ..+
T Consensus       131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d  209 (282)
T 4f3v_A          131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA  209 (282)
T ss_dssp             TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH
T ss_pred             cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH
Confidence            446777 89999999999999999999999887653221  3589999999999999999999999998654  55 678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      +++++|.++.++|+.++|...|++++..+|+ ..+...+..
T Consensus       210 a~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          210 IAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            9999999999999999999999999999999 888777653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.16  E-value=5.4e-11  Score=114.89  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.....++.+|.++.+.|+|++|+..|+++++++|++..+++++|.+|.++|++++|++.|+++++++|++..++.+++.
T Consensus        37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  116 (477)
T 1wao_1           37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  116 (477)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q 013459          403 A--REMLGYYKEAIEDFS-----------YALVLEPTN  427 (442)
Q Consensus       403 ~--~~~~~~~~~A~~~~~-----------~~l~~~p~~  427 (442)
                      +  +.++|++++|++.++           ++++++|+.
T Consensus       117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          117 CNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            8  889999999999999           888777754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.16  E-value=2.8e-10  Score=101.37  Aligned_cols=104  Identities=15%  Similarity=0.104  Sum_probs=96.3

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--  389 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--  389 (442)
                      .+.+.....+..+|.++...|++++|+.+|++++++        +|....++.++|.++..+|++++|+..|++++++  
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  158 (283)
T 3edt_B           79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA  158 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            345778899999999999999999999999999998        4666789999999999999999999999999998  


Q ss_pred             ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          390 ------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       390 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                            .|....++..+|.++..+|++++|++++++++++
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                  7777889999999999999999999999999987

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.15  E-value=2.2e-10  Score=89.58  Aligned_cols=88  Identities=18%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....++.+|.++...+++++|+..|+++++.+|++..+++.+|.++.++|++++|+..|+++++++|.+..+++.++
T Consensus        46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  125 (133)
T 2lni_A           46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ  125 (133)
T ss_dssp             CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 013459          402 TAREMLGY  409 (442)
Q Consensus       402 ~~~~~~~~  409 (442)
                      .++..+|+
T Consensus       126 ~~~~~~~~  133 (133)
T 2lni_A          126 RCMMAQYN  133 (133)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhcC
Confidence            99988764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=1.8e-10  Score=112.19  Aligned_cols=116  Identities=18%  Similarity=0.125  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCcc
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLE---SGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~---~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      |.....+..+|..+...|++++|+..|+++++..|++..      ++..+|.++..   .|++++|+..|++++.++|++
T Consensus       369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence            455678889999999999999999999999999888755      89999999999   999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ..+++.+|.++...|++++|.+.|+++++++|+++.++..+..+.
T Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887665544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.15  E-value=9.8e-10  Score=107.77  Aligned_cols=114  Identities=24%  Similarity=0.213  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .+..++.+|..+...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..|+++++.+|++..+++.+|.++
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  320 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY  320 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            4667999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ...|++++|++.|+++++++|++..++..++.+..
T Consensus       321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999988887753

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.15  E-value=1.7e-10  Score=94.32  Aligned_cols=84  Identities=13%  Similarity=0.092  Sum_probs=78.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..+++.++
T Consensus        41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHH
Q 013459          402 TARE  405 (442)
Q Consensus       402 ~~~~  405 (442)
                      ....
T Consensus       121 l~~~  124 (164)
T 3sz7_A          121 LETT  124 (164)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.14  E-value=1.4e-10  Score=90.44  Aligned_cols=71  Identities=18%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                      ...++.++|..+++.|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|++.|+++++++|++..
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            34678899999999999999999999999999999999999999999999999999999999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=4.2e-10  Score=110.66  Aligned_cols=122  Identities=9%  Similarity=0.019  Sum_probs=115.6

Q ss_pred             cccchHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKA  386 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~  386 (442)
                      +..+|+...+|+.++.++...++          ++++++.++++++.+|++..+|+.++.++.+++  +++++++.++++
T Consensus        56 l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~  135 (567)
T 1dce_A           56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF  135 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            45568899999999999999988          999999999999999999999999999999999  779999999999


Q ss_pred             HhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          387 INLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       387 l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++++|.|..+|...+.++..++ .++++++++.++++.+|+|..+|.+...+...
T Consensus       136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            9999999999999999999999 89999999999999999999999999887654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.14  E-value=1.2e-09  Score=97.26  Aligned_cols=111  Identities=23%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccH
Q 013459          323 KQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~  394 (442)
                      +....+++.+|..+..    .+++++|+..|+++++.+  +..+++.+|.+|..    .+++++|+.+|+++++.+  +.
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence            5566789999999999    999999999999999885  78999999999999    999999999999999874  78


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          395 KAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       395 ~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .+++++|.+|..    .+++++|+++|+++++.+  +..++..++.+..
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            899999999999    999999999999999876  5677777777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.14  E-value=4.2e-10  Score=85.01  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHH
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASL  432 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~  432 (442)
                      +...++.+|.++...|++++|+..|+++++++|.+..+++++|.++..+|++++|++.|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            357789999999999999999999999999999999999999999999999999999999999999999      77777


Q ss_pred             HHHHHHh
Q 013459          433 SADRLRK  439 (442)
Q Consensus       433 ~l~~~~~  439 (442)
                      .++.+..
T Consensus        83 ~~~~~~~   89 (111)
T 2l6j_A           83 RLELAQG   89 (111)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.13  E-value=3.3e-10  Score=88.04  Aligned_cols=89  Identities=18%  Similarity=0.061  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....+..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+.+|+++++++|++..+++.++
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  121 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK  121 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCH
Q 013459          402 TAREMLGYY  410 (442)
Q Consensus       402 ~~~~~~~~~  410 (442)
                      .++..+|++
T Consensus       122 ~~~~~~~~~  130 (131)
T 2vyi_A          122 IAELKLREA  130 (131)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999998875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.13  E-value=2.3e-10  Score=103.92  Aligned_cols=121  Identities=9%  Similarity=-0.096  Sum_probs=113.8

Q ss_pred             cccchHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHhcCCccHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      +..+|....+|+.++.++...+ ++++++..+++++..+|++..+|+.++.++.++ + +++++++.++++++.+|.|..
T Consensus        81 L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~  160 (349)
T 3q7a_A           81 VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH  160 (349)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH
T ss_pred             HHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH
Confidence            4555889999999999999999 599999999999999999999999999999998 8 999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          396 AYLRRGTAREMLGYYK--------EAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~--------~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +|...+.++.+++.++        +++++++++++.+|.|..+|.+...+..
T Consensus       161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999998888        9999999999999999999999988754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.13  E-value=7.1e-10  Score=103.30  Aligned_cols=96  Identities=18%  Similarity=0.154  Sum_probs=91.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..+.....++++|.++++.++|++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 013459          401 GTAREMLGYYKEAIED  416 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~  416 (442)
                      +.++..+++++++.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.13  E-value=6e-10  Score=85.98  Aligned_cols=78  Identities=12%  Similarity=0.054  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++.+|..+.+.|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|++..++..++.+..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999988887753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.13  E-value=2.4e-10  Score=93.28  Aligned_cols=90  Identities=13%  Similarity=0.013  Sum_probs=82.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-HHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRR  400 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~  400 (442)
                      .|.....++++|.++++.|+|++|+..++++++++|++..+++.+|.+|..+|++++|+.+|++++.++|++. .+...+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999999999999999999998 667777


Q ss_pred             HHHHHHcCCHH
Q 013459          401 GTAREMLGYYK  411 (442)
Q Consensus       401 a~~~~~~~~~~  411 (442)
                      +.+....+++.
T Consensus       139 ~~~~~~~~~~~  149 (162)
T 3rkv_A          139 KIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            77776655443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.13  E-value=2.5e-10  Score=84.83  Aligned_cols=85  Identities=11%  Similarity=0.106  Sum_probs=72.2

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLR  399 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~  399 (442)
                      +|.+...++.+|.+++..|+|++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|.+  ......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            477889999999999999999999999999999999999999999999999999999999999999987643  333334


Q ss_pred             HHHHHHH
Q 013459          400 RGTAREM  406 (442)
Q Consensus       400 ~a~~~~~  406 (442)
                      +...+..
T Consensus        83 l~~~l~~   89 (100)
T 3ma5_A           83 LQDAKLK   89 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.12  E-value=5.9e-11  Score=109.39  Aligned_cols=104  Identities=14%  Similarity=0.046  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-H
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-E  405 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~  405 (442)
                      ..++++|.++++.++|++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999884 4


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          406 MLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      ..++.+++.+.|++++...|+++..
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            5667888999999999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=8.3e-10  Score=108.56  Aligned_cols=120  Identities=12%  Similarity=0.079  Sum_probs=112.7

Q ss_pred             ccchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      ..+|....+|+.++.++.+.+  +|+++++.++++++++|.+..+|..++.+..+.+ .+++++++++++++.+|.|..+
T Consensus       101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence            345889999999999999999  7799999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          397 YLRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       397 ~~~~a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |++++.++..+              +.++++++++.+++.++|++..+|.+++.+..
T Consensus       181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence            99999999885              56899999999999999999999999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.11  E-value=7.1e-10  Score=99.66  Aligned_cols=120  Identities=13%  Similarity=-0.022  Sum_probs=110.3

Q ss_pred             cchHHHHHHHHHHHHH----Hhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCC
Q 013459          321 NQKQSAEIAKEKGNQA----YKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--QAEADCTKAINLDK  391 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~l~~~p  391 (442)
                      .+|....+|+.++.++    ...   +++++++.+++++++.+|.+..+|+.++.+..++++++  ++++.++++++.+|
T Consensus        98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A           98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            3477888999999888    666   78999999999999999999999999999999999998  99999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          392 KNVKAYLRRGTAREMLGY------YKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       392 ~~~~~~~~~a~~~~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      .|..+|.+.+.++..+++      ++++++++++++..+|+|..+|.++..+...
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~  232 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER  232 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            999999999999999887      9999999999999999999999998887643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.11  E-value=4e-10  Score=95.26  Aligned_cols=97  Identities=18%  Similarity=0.116  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      ...++.+|.+++..|+|++|+..++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHH-HHHHHHHh
Q 013459          406 MLGYYKEAI-EDFSYALV  422 (442)
Q Consensus       406 ~~~~~~~A~-~~~~~~l~  422 (442)
                      .+++++++. +.|.+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999988877 44555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.10  E-value=3.7e-10  Score=108.59  Aligned_cols=93  Identities=18%  Similarity=0.130  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      .....++++|.++++.++|++|+.+|+++++++|++..+++++|.+|.++|++++|+.+|+++++++|++..++..++.+
T Consensus       315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHH
Q 013459          404 REMLGYYKEAIED  416 (442)
Q Consensus       404 ~~~~~~~~~A~~~  416 (442)
                      +..++++++|.+.
T Consensus       395 ~~~~~~~~~a~~~  407 (457)
T 1kt0_A          395 QKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.09  E-value=1.4e-09  Score=85.59  Aligned_cols=86  Identities=15%  Similarity=0.137  Sum_probs=79.8

Q ss_pred             hhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          354 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       354 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      ..++.+...++.+|.+++..|++++|+..|++++.++|.+..+++++|.++..+|++++|+..|+++++++|++..++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 013459          434 ADRLRK  439 (442)
Q Consensus       434 l~~~~~  439 (442)
                      ++.+..
T Consensus        83 l~~~~~   88 (137)
T 3q49_B           83 LGQCQL   88 (137)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.09  E-value=1.9e-10  Score=103.18  Aligned_cols=114  Identities=14%  Similarity=0.029  Sum_probs=96.1

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-----HH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-----KA  396 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~  396 (442)
                      .|.+...++.+|.++.+.|+|++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++.     ..
T Consensus        34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~  113 (281)
T 2c2l_A           34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI  113 (281)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH
Confidence            4677889999999999999999999999999999999999999999999999999999999999999988652     11


Q ss_pred             HH--------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          397 YL--------------------------RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       397 ~~--------------------------~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      +.                          .++..  ..|++++|++.++++++++|++......+..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (281)
T 2c2l_A          114 PSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACI  178 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHH
Confidence            11                          11221  35788999999999999999887766655544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.08  E-value=1.3e-09  Score=105.28  Aligned_cols=115  Identities=14%  Similarity=0.027  Sum_probs=90.2

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCC
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDK  391 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p  391 (442)
                      .+..+..+.++|.+|+..|+|++|+.+|++++++.        ++.+.++.++|.++.+.+  +|++|+.+|+++++++|
T Consensus        90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            45667778888888888888888888888888763        345677888887776654  68888888888888888


Q ss_pred             ccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          392 KNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       392 ~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      ++++++..++.++.   ..+++++|++.|+++++++|++..++..++.
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~  217 (472)
T 4g1t_A          170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL  217 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence            88888888887754   4466778888888888888888887766654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.08  E-value=2.1e-09  Score=97.25  Aligned_cols=118  Identities=12%  Similarity=0.086  Sum_probs=109.7

Q ss_pred             cchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      .+|.+..+|+.++.++...+  ++++++.+++++++.+|.|..+|..++.+....+. +++++.++.++++.+|.|..+|
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW  182 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  182 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            45888999999999999988  49999999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          398 LRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       398 ~~~a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .+++.++..+              +.++++++++.+++..+|+|..+|.++..+.
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999887              5589999999999999999999998776554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.08  E-value=4.8e-10  Score=84.60  Aligned_cols=85  Identities=22%  Similarity=0.312  Sum_probs=80.3

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHH
Q 013459          355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASL  432 (442)
Q Consensus       355 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~  432 (442)
                      ++|++..+++.+|.++...|++++|+..|+++++++|.+..+++.+|.++..+|++++|+++|+++++++|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368888999999999999999999999999999999999999999999999999999999999999999999  999998


Q ss_pred             HHHHHHh
Q 013459          433 SADRLRK  439 (442)
Q Consensus       433 ~l~~~~~  439 (442)
                      .++.+..
T Consensus        81 ~l~~~~~   87 (112)
T 2kck_A           81 AKADALR   87 (112)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8888754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.08  E-value=3.6e-09  Score=95.68  Aligned_cols=122  Identities=9%  Similarity=0.020  Sum_probs=113.4

Q ss_pred             cccchHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKA  386 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~  386 (442)
                      +..+|....+|+.++.++...++          +++++.++++++..+|++..+|+.++.++..+++  +++++..+.++
T Consensus        57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF  136 (331)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            55668899999999999988776          7999999999999999999999999999999994  99999999999


Q ss_pred             HhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          387 INLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       387 l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +..+|.|..+|...+.++...+. ++++++++.++++.+|.|..+|.+...+...
T Consensus       137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998 6999999999999999999999999887653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.08  E-value=5.3e-10  Score=101.17  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=95.5

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  389 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----  389 (442)
                      .+.....+..+|.++...|++++|+.+|++++++        .|....++..+|.++..+|++++|+..|+++++.    
T Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  228 (311)
T 3nf1_A          149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER  228 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            4677889999999999999999999999999998        6666788999999999999999999999999974    


Q ss_pred             ---------------------------------------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          390 ---------------------------------------------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       390 ---------------------------------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                                                                   +|....+++.+|.+|..+|++++|.++|++++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence                                                         46667899999999999999999999999999988


Q ss_pred             CC
Q 013459          425 PT  426 (442)
Q Consensus       425 p~  426 (442)
                      |+
T Consensus       309 ~~  310 (311)
T 3nf1_A          309 KQ  310 (311)
T ss_dssp             C-
T ss_pred             hc
Confidence            75

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.07  E-value=9.4e-10  Score=104.09  Aligned_cols=116  Identities=17%  Similarity=0.213  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCc
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKK  392 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~  392 (442)
                      +.....++.+|..++..|+|++|+..|++++++.|++.    .++..+|.+|...|++++|+.+|++++++      .+.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            56778899999999999999999999999999999986    58899999999999999999999999988      577


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHH
Q 013459          393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL------EPTNKRASLSADRLR  438 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~  438 (442)
                      ...+++.+|.+|..+|++++|+++|++++++      .+....++..++.+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  176 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY  176 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999998      444445555555554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.07  E-value=9.8e-10  Score=103.13  Aligned_cols=104  Identities=16%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cC
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAIN-----LD  390 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~  390 (442)
                      .+..+..+..+|.++...|+|++|+.+|++++++.+...      .++.++|.+|..+|++++|+.+|+++++     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            445566777778888888888888888888877654332      4677778888888888888888888777     35


Q ss_pred             -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          391 -KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       391 -p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                       |....+++++|.++..+|++++|.+++++++++.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             66677777788888888888888888888887754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.06  E-value=5.2e-09  Score=93.13  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHH
Q 013459          325 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       325 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      ....++.+|..+..    .+++++|+..|+++++.+  +..+++.+|.+|..    .+++++|+.+|+++++.+  +..+
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  148 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG  148 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence            56788899999999    999999999999999874  88999999999999    999999999999999976  6788


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          397 YLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       397 ~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++++|.+|..    .+++++|+++|+++++.  ++..++..++.+..
T Consensus       149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  193 (273)
T 1ouv_A          149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYH  193 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            9999999998    99999999999999987  45777777777654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.06  E-value=1.2e-09  Score=86.95  Aligned_cols=81  Identities=19%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 013459          360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-------NVK-----AYLRRGTAREMLGYYKEAIEDFSYALVL----  423 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~~l~~----  423 (442)
                      ...+.++|..+++.|+|++|+..|+++++++|+       +..     +|+++|.++.++|+|++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            356788999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCChHHH----HHHHHHHhh
Q 013459          424 ---EPTNKRAS----LSADRLRKV  440 (442)
Q Consensus       424 ---~p~~~~~~----~~l~~~~~~  440 (442)
                         +|++..+|    ..++.+...
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~  114 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDG  114 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHH
Confidence               99999999    888776543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.06  E-value=7.4e-10  Score=100.23  Aligned_cols=102  Identities=16%  Similarity=0.125  Sum_probs=93.9

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  389 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----  389 (442)
                      .+.....+..+|.++...|++++|+.+|++++++.        |....++..+|.++...|++++|+.+|++++++    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999884        455678999999999999999999999999998    


Q ss_pred             ----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          390 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       390 ----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                          +|....+++.+|.++..+|++++|++++++++++
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                6777889999999999999999999999999975

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.06  E-value=8.7e-10  Score=89.13  Aligned_cols=99  Identities=16%  Similarity=0.106  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KNV  394 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~  394 (442)
                      ..+..+|..+...|++++|+.++++++++.+..      ..++..+|.++...|++++|+..+++++++.+      ...
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            455666666666666666666666666554332      34555666666666666666666666665421      113


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      .++..+|.++...|++++|.+++++++++..
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.03  E-value=2.7e-09  Score=95.92  Aligned_cols=100  Identities=10%  Similarity=-0.036  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRR  400 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~  400 (442)
                      |.........+..+...+++++|+..|+++++.+|++..+++++|.++.+.|++++|+..|+++++.+|++  ..++.++
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence            34445555666667777777778888889999999999999999999999999999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 013459          401 GTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                      +.++..+|+.++|...|++++.
T Consensus       262 ~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          262 QEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=4.1e-09  Score=90.08  Aligned_cols=111  Identities=13%  Similarity=-0.004  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC--cc
Q 013459          324 QSAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDK--KN  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p--~~  393 (442)
                      ..+.+++.+|..+.. +    ++++|+.+|+++++  +.++.+++++|.+|..    .+++++|+.+|+++.+..+  .+
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            345677777777777 5    77888888887754  4577777778877776    6778888888888877776  34


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          394 VKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       394 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +.+++++|.+|..    .+++++|+++|+++.++ +.++.+...++.+.
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF  172 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence            7777778887777    67778888888887777 55666666666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.02  E-value=2.9e-09  Score=77.40  Aligned_cols=75  Identities=17%  Similarity=0.073  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          356 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       356 ~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      +|+++..+..+|.+++..++   .++|...++++++++|++..+++.+|..+++.|+|++|+.+|+++++.+|.++..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            57788888888888876655   6888888888888888888888888888888888888888888888888875443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=1.2e-08  Score=92.02  Aligned_cols=115  Identities=11%  Similarity=0.005  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCccH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI---NLDKKNV  394 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~p~~~  394 (442)
                      .....++.+|..+...|+|++|+..|+++++..+..      ..+++++|.+|..+|++++|+.+|++++   +..+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            445667788999999999999999999999875543      5689999999999999999999999999   4455432


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHH
Q 013459          395 ----KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR  438 (442)
Q Consensus       395 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~  438 (442)
                          .+++++|.+|..+|++++|++++++++++.++.      ..++..++.+.
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y  246 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence                689999999999999999999999999886431      44555555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.02  E-value=3.3e-09  Score=78.35  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH--HHHHHHH
Q 013459          364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS--LSADRLR  438 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~~l~~~~  438 (442)
                      +.+|.++.+.|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|+++|+++++++|++..++  ..+.++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~   81 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDIL   81 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999 999999999999999999999999999999999887  4444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=1.9e-09  Score=97.25  Aligned_cols=114  Identities=11%  Similarity=0.033  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCc
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKK  392 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~  392 (442)
                      ...+..+|..+...++|++|+.+|++++++.+..      ..++.++|.+|..+|++++|+.+|+++++.       .+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            3455568999999999999999999999975443      347899999999999999999999999952       233


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHh
Q 013459          393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLRK  439 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~  439 (442)
                      ...+++++|.+|.++|+|++|++++++++++.++.      ..++..++.+..
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~  247 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR  247 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999987544      556666666543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.01  E-value=3.9e-09  Score=81.13  Aligned_cols=86  Identities=33%  Similarity=0.463  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.....++.+|.++...|++++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++.+|.+..++..++.
T Consensus        40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  119 (125)
T 1na0_A           40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN  119 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            55677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 013459          403 AREMLG  408 (442)
Q Consensus       403 ~~~~~~  408 (442)
                      ++..+|
T Consensus       120 ~~~~~g  125 (125)
T 1na0_A          120 AKQKQG  125 (125)
T ss_dssp             HHHHHC
T ss_pred             HHHhcc
Confidence            987654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.01  E-value=2.1e-09  Score=97.62  Aligned_cols=105  Identities=16%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----  393 (442)
                      ..+..+..+|.++.. |+|++|+.+|++++++.+..      ..++.++|.+|.++|+|++|+.+|++++.+.+.+    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            456789999999999 99999999999999987653      5788999999999999999999999999986544    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          394 --VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       394 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                        ..+++.+|.++..+|++++|+.+|++++ ++|+....
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence              3478889999999999999999999999 99976543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.00  E-value=2.2e-09  Score=97.49  Aligned_cols=119  Identities=13%  Similarity=0.030  Sum_probs=111.5

Q ss_pred             cchHHHHHHHHHHHHHHhc-c-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhcC
Q 013459          321 NQKQSAEIAKEKGNQAYKD-K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEADCTKAINLD  390 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~l~~~  390 (442)
                      .+|.+..+|+.++.++.+. + ++++++++++++++.+|.+..+|+.++.+..+.++++        ++++.++++++.+
T Consensus       118 ~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d  197 (349)
T 3q7a_A          118 QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD  197 (349)
T ss_dssp             TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence            4478899999999999987 7 8999999999999999999999999999999999888        9999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          391 KKNVKAYLRRGTAREMLGY-------YKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       391 p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      |.|..+|.+++.++.++++       ++++++++++++.++|+|..+|.++..+..
T Consensus       198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~  253 (349)
T 3q7a_A          198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK  253 (349)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999987       799999999999999999999999877754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.99  E-value=4.6e-09  Score=98.49  Aligned_cols=103  Identities=11%  Similarity=-0.021  Sum_probs=83.7

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----LN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---  390 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---  390 (442)
                      .+.+..+..+.++|.++...|+|++|+.+|+++++     .+ |....++.++|.++.++|++++|+.++++++.+.   
T Consensus       218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  297 (383)
T 3ulq_A          218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA  297 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            44556667899999999999999999999999999     45 6778899999999999999999999999999884   


Q ss_pred             --CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459          391 --KKNVKAYLRRGTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       391 --p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                        +.....+..++.++...|+++...+.+...-+
T Consensus       298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence              33344467789999999999444444433333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.99  E-value=1.5e-09  Score=98.53  Aligned_cols=105  Identities=10%  Similarity=-0.011  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---  393 (442)
                      ...+..+.++|.++...|+|++|+.+|++++++.++.      ..++.++|.+|.. |++++|+.+|++++.+.+..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            4567889999999999999999999999999985432      4678899999998 99999999999999987643   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                         ..++.++|.+|..+|++++|+.+|++++++.+++.
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence               57899999999999999999999999999877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.99  E-value=4.1e-09  Score=95.02  Aligned_cols=102  Identities=18%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--  393 (442)
                      ......+..+|.++...|+|++|+.+|+++++..       +....+++++|.+|.++|+|++|+.++++++++.+..  
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence            3456789999999999999999999999999532       2234688999999999999999999999999886443  


Q ss_pred             ----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 013459          394 ----VKAYLRRGTAREMLG-YYKEAIEDFSYALVLE  424 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~  424 (442)
                          ..+++++|.+|..+| ++++|+++|++++.+.
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                789999999999999 5799999999999764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.98  E-value=3.8e-09  Score=85.31  Aligned_cols=105  Identities=19%  Similarity=0.245  Sum_probs=92.1

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-  393 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-  393 (442)
                      +....+..+..+|..++..|++++|+.++++++++.++  +    ..++..+|.++...|++++|+.++++++++.+.. 
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            34677889999999999999999999999999987542  2    3588899999999999999999999999876442 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          394 -----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       394 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                           ..+++++|.++...|++++|++++++++++.+
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                 56889999999999999999999999998743

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.98  E-value=2.5e-09  Score=90.30  Aligned_cols=104  Identities=14%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--c
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--N  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~  393 (442)
                      +.....+..+|..+...|++++|+..+++++++   .+++    ..++.++|.++..+|++++|+..+++++.+.+.  +
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  142 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD  142 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence            344445555555555555555555555555554   2211    234445555555555555555555555443211  1


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                          ..++.++|.++..+|++++|.+++++++++...
T Consensus       143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence                123344555555555555555555555554433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.98  E-value=4.5e-09  Score=95.84  Aligned_cols=104  Identities=20%  Similarity=0.247  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKNV  394 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~  394 (442)
                      ....++..|..++..|+|++|+..|+++++.+|++    ..++..+|.++...|++++|+..+++++.+      .+...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45678889999999999999999999999999998    468889999999999999999999999887      45557


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      .++..+|.++...|++++|+..+++++++.+...
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  117 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN  117 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence            7999999999999999999999999999876543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=6.3e-09  Score=82.81  Aligned_cols=82  Identities=20%  Similarity=0.157  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....++.+|.+++..++|++|+..|+++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999998888765


Q ss_pred             HH
Q 013459          405 EM  406 (442)
Q Consensus       405 ~~  406 (442)
                      .+
T Consensus       144 ~~  145 (148)
T 2dba_A          144 GP  145 (148)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.97  E-value=2.8e-09  Score=81.21  Aligned_cols=86  Identities=8%  Similarity=0.037  Sum_probs=73.8

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLR  399 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~  399 (442)
                      .|.....++.+|.+++..|+|++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|.+  ......
T Consensus        15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence            366788999999999999999999999999999999999999999999999999999999999999998754  344444


Q ss_pred             HHHHHHHc
Q 013459          400 RGTAREML  407 (442)
Q Consensus       400 ~a~~~~~~  407 (442)
                      +...+..+
T Consensus        95 l~~~l~~l  102 (115)
T 2kat_A           95 LQVFLRRL  102 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            44444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.97  E-value=5.9e-09  Score=79.21  Aligned_cols=82  Identities=15%  Similarity=0.101  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      |.....++.+|.+++..|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  114 (118)
T 1elw_A           35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  114 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HH
Q 013459          403 AR  404 (442)
Q Consensus       403 ~~  404 (442)
                      +.
T Consensus       115 ~~  116 (118)
T 1elw_A          115 ME  116 (118)
T ss_dssp             HH
T ss_pred             hh
Confidence            65

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=6.9e-09  Score=88.67  Aligned_cols=112  Identities=11%  Similarity=-0.024  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCcc
Q 013459          324 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      ..+.+++.+|..+..    .+++++|+..|+++++..+  +++.+++++|.+|..    .+++++|+.+|++++++ +.+
T Consensus        83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~  161 (212)
T 3rjv_A           83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT  161 (212)
T ss_dssp             TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred             CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence            457789999999998    8999999999999999987  358999999999999    88999999999999998 677


Q ss_pred             HHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          394 VKAYLRRGTAREML-G-----YYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       394 ~~~~~~~a~~~~~~-~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +.+++++|.+|... |     ++++|+.+|+++.+..  +..+...+..+.
T Consensus       162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~  210 (212)
T 3rjv_A          162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS  210 (212)
T ss_dssp             THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence            88999999999864 3     8999999999999884  567777777765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.97  E-value=5.4e-09  Score=94.22  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK---  392 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---  392 (442)
                      ......++.+|..+...|+|++|+.+|++++   +..+++.    .+++++|.+|..+|+|++|+.++++++++.+.   
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence            3457799999999999999999999999999   4455543    68999999999999999999999999987643   


Q ss_pred             ---cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 013459          393 ---NVKAYLRRGTAREMLGYYKEA-IEDFSYALVLE  424 (442)
Q Consensus       393 ---~~~~~~~~a~~~~~~~~~~~A-~~~~~~~l~~~  424 (442)
                         ...+++++|.+|..+|++++| ..++++++.+.
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence               267899999999999999999 88899998764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.96  E-value=1.4e-08  Score=95.08  Aligned_cols=104  Identities=17%  Similarity=0.024  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCC
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDK  391 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~p  391 (442)
                      +..+..+..+|.++...|+|++|+++|++++++.+.      ...++.++|.+|..+|++++|+.+|++++.     .+|
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  258 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD  258 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            457888999999999999999999999999987432      246889999999999999999999999999     788


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ....+++++|.++..+|++++|..++++++++.+.
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999998654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.96  E-value=7.3e-09  Score=97.46  Aligned_cols=106  Identities=19%  Similarity=0.219  Sum_probs=79.8

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLESGSFLQAEADCTKAINLDKKN--  393 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--  393 (442)
                      .+.....+..+|.++...|+|++|+..|++++++.++...      ++..+|.++...|++++|+.+|++++.+.+..  
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  262 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  262 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence            3556677888888888888888888888888877554433      77778888888888888888888887766544  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                          ..+++.+|.++...|++++|+++|++++++.+..
T Consensus       263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence                5677778888888888888888888887775543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.96  E-value=1.1e-08  Score=79.48  Aligned_cols=85  Identities=8%  Similarity=0.016  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      +.....++.+|.+++..|+|++|+..|+++++.+|++   ..+++.+|.++.++|++++|+..|+++++.+|++..+...
T Consensus        36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            3344789999999999999999999999999999999   8899999999999999999999999999999999887665


Q ss_pred             HHHHHHHc
Q 013459          400 RGTAREML  407 (442)
Q Consensus       400 ~a~~~~~~  407 (442)
                      +..+....
T Consensus       116 ~~~l~~l~  123 (129)
T 2xev_A          116 QERLQSIR  123 (129)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            55544433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.93  E-value=4.2e-09  Score=99.13  Aligned_cols=104  Identities=20%  Similarity=0.236  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCcc
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~  393 (442)
                      ..+..++..|..++..|+|++|+.+|++++++.|++.    .++..+|.++...|++++|+.+|++++.+      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            4567889999999999999999999999999999984    68889999999999999999999999877      3455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      ..+++.+|.++..+|++++|+.++++++++.+..
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  120 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  120 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence            7799999999999999999999999999987754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.93  E-value=4.4e-09  Score=99.40  Aligned_cols=104  Identities=17%  Similarity=0.206  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---  393 (442)
                      +.....+..+|.+++..|+|++|+.+|++++++.++...      ++..+|.++..+|++++|+.+|++++.+.+..   
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            456667777788888888888888888877777654322      67777777777788888888877777766533   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                         ..+++.+|.++..+|++++|++++++++++.++
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               566777777777777777777777777776543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.92  E-value=7.5e-09  Score=96.92  Aligned_cols=120  Identities=15%  Similarity=0.059  Sum_probs=102.7

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK-  391 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-  391 (442)
                      .+.+..+..++.+|.+++..|++++|+.++++++++.+.       ...++.++|.+|..+|++++|+.+|++++++.+ 
T Consensus       135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  214 (378)
T 3q15_A          135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD  214 (378)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            445778899999999999999999999999999988543       245788999999999999999999999998743 


Q ss_pred             -----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCChHHHHHHHHHHh
Q 013459          392 -----KNVKAYLRRGTAREMLGYYKEAIEDFSYALV-----LEPTNKRASLSADRLRK  439 (442)
Q Consensus       392 -----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~  439 (442)
                           ....+++++|.+|..+|++++|+++|+++++     .+|....+...++.+..
T Consensus       215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence                 2246889999999999999999999999999     67777777777776653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.89  E-value=2.6e-08  Score=74.28  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      +..++.+|..+++.++|.+|+..|+++++..       .....++..+|.++.++|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3445666666666666666666666666542       123455556666666666666666666666666666655555


Q ss_pred             HHH
Q 013459          399 RRG  401 (442)
Q Consensus       399 ~~a  401 (442)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.87  E-value=1.3e-08  Score=92.81  Aligned_cols=105  Identities=19%  Similarity=0.227  Sum_probs=87.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--  393 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--  393 (442)
                      .+.....+..+|..++..|++++|+..+++++++.+..      ..++..+|.++...|++++|+..+++++.+.+..  
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  258 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence            35667788889999999999999999999998875443      2378888999999999999999999988876554  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                          ..++..+|.++..+|++++|.+++++++++.+.
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence                668888899999999999999999998887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.87  E-value=2.4e-08  Score=95.85  Aligned_cols=110  Identities=13%  Similarity=0.096  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCc
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK  392 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~  392 (442)
                      +....+.+..+..+|+|++|+.+|++++++     .+++   ...+.++|.+|..+|+|++|+.++++++.+     .|+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            334456677788999999999999999986     3444   568899999999999999999999999876     244


Q ss_pred             c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHH
Q 013459          393 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSAD  435 (442)
Q Consensus       393 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~  435 (442)
                      +   ...+.++|.+|..+|++++|+..|++++++     .|+++.....+.
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~  439 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA  439 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            4   558899999999999999999999999974     677776655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.86  E-value=7.2e-08  Score=72.74  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=90.6

Q ss_pred             hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-C-ccHHHHHHHHHHHHHcCCHHH
Q 013459          338 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ---AEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKE  412 (442)
Q Consensus       338 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~~~~~~  412 (442)
                      .......+...|.+.+..++.+..+.+++|+++.+..+...   ++..++..++.+ | .+.+.+|.+|..++++|+|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            34455667777888888888899999999999999887766   999999999887 5 567899999999999999999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          413 AIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       413 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      |.++++.+++.+|+|..+......+++.+
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998888877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.86  E-value=2.4e-08  Score=98.02  Aligned_cols=117  Identities=10%  Similarity=-0.020  Sum_probs=95.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      .|.....|..++..+.+.|++++|...|+++++++|.++ .+|..++.++.+.|++++|++.|+++++..|.+...+...
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence            467788888999999999999999999999999988885 5888888888888888888888888888877776666666


Q ss_pred             HHH-HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          401 GTA-REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       401 a~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +.+ +...|++++|.+.|+++++.+|+++.++..+..+.
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~  435 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  435 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            554 34678888888888888888888888877776654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.86  E-value=1.1e-08  Score=86.40  Aligned_cols=103  Identities=10%  Similarity=-0.025  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CC--
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DK--  391 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p--  391 (442)
                      ......+..+|..+...|+|++|+.+|+++++      ..+....++.++|.++...|++++|+..+++++.+   .+  
T Consensus        23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  102 (203)
T 3gw4_A           23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED  102 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence            45688999999999999999999999999999      55666789999999999999999999999999988   33  


Q ss_pred             --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          392 --KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       392 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                        ....+++++|.++..+|++++|+.++++++++.+
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence              2356789999999999999999999999997643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.85  E-value=8.8e-09  Score=90.52  Aligned_cols=113  Identities=13%  Similarity=0.034  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTA  403 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~  403 (442)
                      .+.....+..+...|+|++|.+.|+..+...|++. ..+.+|.++++.++|++|+..|+++.+..+..  ..+++++|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45677789999999999999999999999999888 99999999999999999999999887764222  4589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC--CC-ChHHHHHHHHHHh
Q 013459          404 REMLGYYKEAIEDFSYALVLE--PT-NKRASLSADRLRK  439 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~  439 (442)
                      +..+|++++|+.+|++++.-.  |. ..+++..++.+..
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~  219 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR  219 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence            999999999999999998544  44 4456666665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.82  E-value=2e-07  Score=73.47  Aligned_cols=98  Identities=17%  Similarity=0.115  Sum_probs=87.9

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-
Q 013459          332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM-  406 (442)
Q Consensus       332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-  406 (442)
                      +|..+...+.+++|+..|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            899999999999999999999987  688999999999999    89999999999999986  678999999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          407 ---LGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       407 ---~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                         .+++++|+++|+++.+.  .++.+...++
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence               89999999999999988  4555655544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.82  E-value=3.3e-08  Score=93.34  Aligned_cols=106  Identities=11%  Similarity=-0.008  Sum_probs=87.3

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHH
Q 013459          333 GNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKKN---VKA  396 (442)
Q Consensus       333 a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~  396 (442)
                      .....+.|+|++|+.+|++++++     .|++   ...+.++|.+|..+|+|++|+.++++++..     .|++   ...
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            34444578999999999999986     4555   467889999999999999999999999865     2444   558


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR  438 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~  438 (442)
                      ++++|.+|..+|+|++|+.+|++++++     .|+++........+.
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            899999999999999999999999975     688887776655553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.78  E-value=6.1e-08  Score=91.68  Aligned_cols=113  Identities=12%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KK  392 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~  392 (442)
                      .+........+.++|+|++|+..+++++++     .|++   ...+.+++.+|..+|+|++|+.++++++...     |+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            445555666778899999999999999986     3444   4688999999999999999999999998652     44


Q ss_pred             c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHH
Q 013459          393 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR  438 (442)
Q Consensus       393 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~  438 (442)
                      +   ...++++|.+|..+|++++|+.+|++++++     .|+++.....+..+.
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  420 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE  420 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4   558899999999999999999999999975     677777665544443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.77  E-value=2.9e-08  Score=72.06  Aligned_cols=72  Identities=17%  Similarity=0.066  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459          322 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      .|.++..+..+|..++..++   .++|..+++++++++|++..+++.+|..+++.|+|++|+..|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            46778899999999986665   7999999999999999999999999999999999999999999999999874

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.76  E-value=6.1e-08  Score=95.07  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=102.1

Q ss_pred             chHHHHHHHHHHHHHHh-------cccHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYK-------DKQWL-------KAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      .|.....|+..|..+.+       .|+++       +|+..|+++++ +.|++..+|..++.++.+.|++++|...|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            37778999999999986       78887       99999999997 89999999999999999999999999999999


Q ss_pred             HhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          387 INLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       387 l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      ++++|.++ .+|..++.++...|++++|.+.|+++++..|.+...+..
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            99999986 699999999999999999999999999998887665543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.76  E-value=4.1e-08  Score=94.29  Aligned_cols=111  Identities=8%  Similarity=-0.039  Sum_probs=94.0

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ...++|..+..+.++|..|..+|+|++|+.++++++++     .|++   ...++++|.+|..+|+|++|+..|++++.+
T Consensus       343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999986     3444   567899999999999999999999999875


Q ss_pred             -----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          390 -----DKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       390 -----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                           .|++   .+...+++.++.+++.|++|...|+++.+..-+|.
T Consensus       423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~  469 (490)
T 3n71_A          423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ  469 (490)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                 3554   45667889999999999999999999877543333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.74  E-value=3.8e-08  Score=76.15  Aligned_cols=80  Identities=18%  Similarity=0.070  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hHHH
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN-------KRAS  431 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~  431 (442)
                      ....++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+.++++++++.|++       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999877       7777


Q ss_pred             HHHHHHH
Q 013459          432 LSADRLR  438 (442)
Q Consensus       432 ~~l~~~~  438 (442)
                      ..++.+.
T Consensus        83 ~~la~~~   89 (131)
T 1elr_A           83 ARIGNSY   89 (131)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.74  E-value=9.2e-08  Score=71.26  Aligned_cols=80  Identities=14%  Similarity=0.033  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      .-++.+|..+++.++|.+|+.+|+++++..       +....++..+|.++.++|++++|+.+++++++++|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            457889999999999999999999999863       3457899999999999999999999999999999999999888


Q ss_pred             HHHHHhh
Q 013459          434 ADRLRKV  440 (442)
Q Consensus       434 l~~~~~~  440 (442)
                      +..+++.
T Consensus        86 ~~~~~~~   92 (104)
T 2v5f_A           86 LKYFEYI   92 (104)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8766654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.60  E-value=6.7e-07  Score=83.23  Aligned_cols=98  Identities=12%  Similarity=-0.004  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHH
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----NVK  395 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~  395 (442)
                      +..+|..+...|+|++|+.+|++++++.        |....++.++|.++...|++++|+.++++++.+.+.     ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            4445555555555555555555555442        112234444555555555555555555555544332     123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ++..+|.++...|++++|..++++++.+.+.
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            4444555555555555555555555555433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.60  E-value=3.1e-07  Score=79.84  Aligned_cols=86  Identities=14%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHH-cCCHH
Q 013459          341 QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-----GSFLQAEADCTKAINLDKKN-VKAYLRRGTAREM-LGYYK  411 (442)
Q Consensus       341 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~-~~~~~  411 (442)
                      ...+|...++++++++|+  +..+|..+|.+|.+.     |+.++|.++|+++++++|+. ..+++.+|..+.. .++++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            568899999999999999  566999999999996     99999999999999999975 9999999999877 59999


Q ss_pred             HHHHHHHHHHhhCCC
Q 013459          412 EAIEDFSYALVLEPT  426 (442)
Q Consensus       412 ~A~~~~~~~l~~~p~  426 (442)
                      +|.+++++++..+|.
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            999999999998876

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.60  E-value=4.1e-07  Score=71.32  Aligned_cols=80  Identities=14%  Similarity=0.016  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ...+..++.|.++.+++   ++++++.++++.++.+ | ++.+++|++|..|+++++|++|.++++++++.+|+|.++..
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            46788999999999988   8889999999999998 6 56899999999999999999999999999999999998876


Q ss_pred             HHHHH
Q 013459          399 RRGTA  403 (442)
Q Consensus       399 ~~a~~  403 (442)
                      .+-.+
T Consensus       110 Lk~~i  114 (152)
T 1pc2_A          110 LERLI  114 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.59  E-value=3.5e-07  Score=88.70  Aligned_cols=108  Identities=17%  Similarity=0.098  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          325 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      ...+++.+|..+...|   ++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++..  ++.++
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~  402 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ  402 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence            4567888888888755   899999999999887  578899999999998    899999999999998864  68899


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---ChHHHHHHHH
Q 013459          398 LRRGTAREM----LGYYKEAIEDFSYALVLEPT---NKRASLSADR  436 (442)
Q Consensus       398 ~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~  436 (442)
                      +++|.+|..    .+++++|.++|+++++.+|+   ++.+...++.
T Consensus       403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~  448 (490)
T 2xm6_A          403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK  448 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence            999999998    89999999999999999854   6666665543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.55  E-value=1.5e-06  Score=78.81  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHH---------------------------------
Q 013459          326 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAA---------------------------------  369 (442)
Q Consensus       326 ~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~---------------------------------  369 (442)
                      +-.++.+|..++..   .++.+|+.+|+++++++|++..++..++.+                                 
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            34456667777654   456889999999999999887666654443                                 


Q ss_pred             -----------HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          370 -----------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       370 -----------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                                 +...|++++|+..+++++.++| +..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence                       3446899999999999999986 4677788899999999999999999999999997753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.55  E-value=5.4e-07  Score=83.89  Aligned_cols=103  Identities=14%  Similarity=0.041  Sum_probs=88.9

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  393 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---  393 (442)
                      .......+..+|..++..|++++|+..+++++...|.+.     .++..+|.++...|++++|+..+++++.+.+..   
T Consensus        10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            344567788899999999999999999999999887653     267889999999999999999999999876543   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                         ..++.++|.++...|++++|++++++++++.
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  123 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  123 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence               2347789999999999999999999999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.54  E-value=8.2e-07  Score=85.09  Aligned_cols=105  Identities=13%  Similarity=0.028  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          328 IAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       328 ~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      +++.+|..+...|   ++++|+..|+++.+..+.....++++|.+|...    +++++|+.+|+++.   |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            4555555555555   555555555555555555555555555555433    45555555555554   5555555555


Q ss_pred             HHH-H--HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          401 GTA-R--EMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       401 a~~-~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      |.+ +  ...+++++|+++|+++.+.  +++.++..++.+
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~  292 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKL  292 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence            555 2  2445555555555555533  244455444444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.53  E-value=1.8e-06  Score=83.71  Aligned_cols=110  Identities=15%  Similarity=-0.016  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHH
Q 013459          324 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      ..+.+++.+|..|..    .+++++|+..|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++...  .++.
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  148 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS  148 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            456788999999999    99999999999999875  578899999999998    88999999999999875  5788


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          396 AYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       396 ~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +++.+|.+|..    .+++++|+++|+++.+.  ++..++..++.+..
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  194 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS  194 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence            99999999998    88999999999999886  57888888887754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.48  E-value=1.7e-06  Score=67.98  Aligned_cols=93  Identities=19%  Similarity=0.059  Sum_probs=81.5

Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----cCCHHHHH
Q 013459          339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAI  414 (442)
Q Consensus       339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~  414 (442)
                      .+++++|+..|+++.+....  .+.  +|.+|...+.+++|+++|+++.+.  .++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            36899999999999998743  444  999999999999999999999986  678999999999999    89999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          415 EDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       415 ~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++|+++.+.  .++.+...++.+..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHH
Confidence            999999987  67888888887753

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.47  E-value=1.1e-06  Score=84.08  Aligned_cols=108  Identities=14%  Similarity=0.040  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHH-H--HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhcCCccH
Q 013459          323 KQSAEIAKEKGNQ-A--YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       323 ~~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~~p~~~  394 (442)
                      +..+.+++.+|.. +  ...+++++|+..|+++.+.  .++.+++++|.+|. .|     ++++|+.+|+++.   +.++
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~  318 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV  318 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence            4445556666665 3  3456666666666666644  35666666666665 44     6666666666666   5666


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          395 KAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       395 ~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .+++++|.+|..    ..++++|.++|+++.+.  +++.+...++.+.
T Consensus       319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y  364 (452)
T 3e4b_A          319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF  364 (452)
T ss_dssp             HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence            666666666654    23666666666666553  3455555555543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.46  E-value=2.8e-06  Score=75.60  Aligned_cols=112  Identities=8%  Similarity=-0.113  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHH--HHHHHHhc--CHHHHHHHHHHHHhcCCc--
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNR--AAAYLESG--SFLQAEADCTKAINLDKK--  392 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~--~~~~~~~~--~~~~A~~~~~~~l~~~p~--  392 (442)
                      +...+.+...+.++.+.|+.+.|.+.+++..+.+|+    +......+  +.+.+..|  ++++|...|+++....|+  
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~  212 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK  212 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence            377888999999999999999999999999999883    23334444  44466667  899999999999888886  


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCChHHHHHHHHH
Q 013459          393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL----------EPTNKRASLSADRL  437 (442)
Q Consensus       393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~  437 (442)
                      ....+++   ++..+|++++|.+.++++++.          +|+++.+..++..+
T Consensus       213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l  264 (310)
T 3mv2_B          213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL  264 (310)
T ss_dssp             HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred             cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence            3445554   899999999999999988877          48898888666444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.40  E-value=6.7e-06  Score=62.06  Aligned_cols=84  Identities=13%  Similarity=-0.034  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          358 NNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      -.....+++|.++.+..+   ..+++..++..++.+|. ..+.+|.+|..+.++|+|++|.++.+.+++.+|+|..+...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            356888889999988775   45789999999988884 47899999999999999999999999999999999999888


Q ss_pred             HHHHHhhh
Q 013459          434 ADRLRKVF  441 (442)
Q Consensus       434 l~~~~~~~  441 (442)
                      ...+++.+
T Consensus       118 k~~Ie~ki  125 (134)
T 3o48_A          118 KSMVEDKI  125 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.38  E-value=3.2e-06  Score=75.29  Aligned_cols=104  Identities=9%  Similarity=-0.018  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------CCcc
Q 013459          328 IAKEKGNQAYKDK--QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL----------DKKN  393 (442)
Q Consensus       328 ~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------~p~~  393 (442)
                      .....+.+.+..|  ++++|...|+++.+..|+  ....+++   +++++|++++|.+.++++++.          +|++
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~  254 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK  254 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            3444455566666  999999999999988886  2334444   899999999999999988876          4889


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459          394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  436 (442)
Q Consensus       394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~  436 (442)
                      +.++.++..+...+|+  +|.++++++.+.+|+++-+.....+
T Consensus       255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k  295 (310)
T 3mv2_B          255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI  295 (310)
T ss_dssp             HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999999999998  8999999999999999987665443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.38  E-value=1.3e-05  Score=61.28  Aligned_cols=85  Identities=13%  Similarity=-0.038  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459          357 GNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL  432 (442)
Q Consensus       357 p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  432 (442)
                      .......++++.++.+..+   ..+++..++..++.+|. ..+.+|.+|..++++|+|++|.++.+.+++.+|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4567889999999999876   45899999999998884 5789999999999999999999999999999999999988


Q ss_pred             HHHHHHhhh
Q 013459          433 SADRLRKVF  441 (442)
Q Consensus       433 ~l~~~~~~~  441 (442)
                      ....+++.+
T Consensus       116 Lk~~Ie~~i  124 (144)
T 1y8m_A          116 LKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.26  E-value=1e-05  Score=84.85  Aligned_cols=94  Identities=14%  Similarity=0.078  Sum_probs=74.3

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---------  392 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---------  392 (442)
                      ......+|+++|..+.+.|++++|+..|.++     +++..|.+.+.++.+.|+|++|+++|.++.+..++         
T Consensus      1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A         1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred             hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence            3456788999999999999999999999886     78899999999999999999999999887654422         


Q ss_pred             ------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459          393 ------------------NVKAYLRRGTAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       393 ------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~  420 (442)
                                        +...++.+|..+.+.|+|++|..+|.++
T Consensus      1176 aYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1176 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                              2234556777777777777777776665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.20  E-value=1e-05  Score=63.73  Aligned_cols=112  Identities=11%  Similarity=0.056  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---C--
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---------TYYSNRAAAYLESGSFLQAEADCTKAINLD---K--  391 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p--  391 (442)
                      -..++.....++..+.|+.|+-+.+.++.+..++.         .++..+|..++..++|..|...|++++++.   +  
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            34577888899999999999999998777643333         377889999999999999999999987542   1  


Q ss_pred             --------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          392 --------------------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       392 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                                          .+.+..|.++.||.+++++++|+..++..- ..-..+.+...++++.
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence                                112688999999999999999999876532 2234566666666664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.13  E-value=1.8e-05  Score=82.90  Aligned_cols=104  Identities=18%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---------------
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK---------------  391 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---------------  391 (442)
                      ..+..+|..++..|+|++|+.+|+++        ..|..++.++.++|++++|++.++++.....               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            45678999999999999999999996        4788999999999999999999999855433               


Q ss_pred             ----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          392 ----------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       392 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                                .+++.+..++..|...|.|++|+..+++++.+++.+...+..++.+.
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence                      13445556777889999999999999999999999888887777665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.11  E-value=1.5e-05  Score=74.38  Aligned_cols=103  Identities=16%  Similarity=0.066  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..|..+|.++.+.|+|++|++.|.++     .++..|...+.++...|+|+.|..+..+ +..+|++   ...+..+|.+
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek  219 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD  219 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence            46888999999999999999999999     4788899999999999999999877765 3355554   4457788999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .|++++|+.++++++.+++....++..++.+.
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~  251 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILY  251 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999888887765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.09  E-value=1.5e-05  Score=75.23  Aligned_cols=89  Identities=11%  Similarity=0.023  Sum_probs=72.7

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ...++|..+..+.++|..|..+|+|++|+.++++++++     .|++   ...++++|.+|..+|++++|+..|++++++
T Consensus       321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999976     3444   467899999999999999999999999875


Q ss_pred             -----CCccHH---HHHHHHHHHHH
Q 013459          390 -----DKKNVK---AYLRRGTAREM  406 (442)
Q Consensus       390 -----~p~~~~---~~~~~a~~~~~  406 (442)
                           .|+++.   .+.+++.+..+
T Consensus       401 ~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          401 MRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHH
Confidence                 355543   44555555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.04  E-value=1.8e-05  Score=74.65  Aligned_cols=79  Identities=14%  Similarity=0.088  Sum_probs=68.0

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL  389 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  389 (442)
                      ...++|..+..+.++|..|..+|+|++|+.++++++++     .|++   ...++++|.+|..+|++++|+..|++++++
T Consensus       332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999986     3444   567999999999999999999999999876


Q ss_pred             -----CCccHHH
Q 013459          390 -----DKKNVKA  396 (442)
Q Consensus       390 -----~p~~~~~  396 (442)
                           .|+++..
T Consensus       412 ~~~~lG~~Hp~~  423 (433)
T 3qww_A          412 MEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHTCTTCHHH
T ss_pred             HHHHcCCCChHH
Confidence                 3555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=4.6e-05  Score=72.15  Aligned_cols=103  Identities=9%  Similarity=-0.021  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------C
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINL------D  390 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~  390 (442)
                      .........++..+...+++++|+.++++++...+.      ...++.++|.+|...|+|++|+..+++++..      .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence            344556777888888999999999999999876332      2578889999999999999999999998865      3


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      +...+++..++.+|..+|++++|...+++++...+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            44577999999999999999999999999998754

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.97  E-value=4.6e-05  Score=57.42  Aligned_cols=80  Identities=11%  Similarity=-0.025  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHhcccHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  398 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  398 (442)
                      ...+..++.|.++.++.+..+   ++.+++..+..+ | ..-+.++.+|..++++|+|.+|.++++.+++..|+|.++.-
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            556889999999999886666   999999999876 4 45689999999999999999999999999999999998876


Q ss_pred             HHHHH
Q 013459          399 RRGTA  403 (442)
Q Consensus       399 ~~a~~  403 (442)
                      ....+
T Consensus       113 Lk~~i  117 (126)
T 1nzn_A          113 LERLI  117 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.82  E-value=5.7e-05  Score=71.50  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---cc
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KN  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~  393 (442)
                      ...+..+..+|..+...|+|++|+..+++++...      +....++..++.+|..+|++++|...+++++...+   +.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  211 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP  211 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence            4467889999999999999999999999998762      22357899999999999999999999999987642   21


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                          ...+..+|..+...++|++|..+|.++++..
T Consensus       212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence                3466778899999999999999999998753

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.80  E-value=0.00019  Score=54.23  Aligned_cols=80  Identities=8%  Similarity=0.003  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..+..++.|.++.++.   +..+++.+++..++.+|. ..+.++.+|..++++|+|++|.++.+.+++..|+|.++.-..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            4578888899998876   456799999999998884 468999999999999999999999999999999999887655


Q ss_pred             HHHH
Q 013459          401 GTAR  404 (442)
Q Consensus       401 a~~~  404 (442)
                      ..+-
T Consensus       119 ~~Ie  122 (134)
T 3o48_A          119 SMVE  122 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.80  E-value=7.6e-05  Score=67.73  Aligned_cols=74  Identities=16%  Similarity=0.034  Sum_probs=66.8

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      ..+..+..+..++..++..|++++|+..+++++.++| +..++..+|.++...|++++|+..|++++.++|....
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            3467788888899999999999999999999999996 4778889999999999999999999999999998754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.71  E-value=0.00041  Score=53.11  Aligned_cols=80  Identities=8%  Similarity=0.001  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ...+..|+.|.++.++.   +..+++.+++..+...|. .-+.++.+|..++++|+|++|.++++.+|+..|+|.++...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            45678889999999877   446799999999998885 46789999999999999999999999999999999888765


Q ss_pred             HHHH
Q 013459          400 RGTA  403 (442)
Q Consensus       400 ~a~~  403 (442)
                      ...+
T Consensus       117 k~~I  120 (144)
T 1y8m_A          117 KSMV  120 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.57  E-value=0.00052  Score=68.53  Aligned_cols=114  Identities=6%  Similarity=-0.156  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      ...+|...+....+.++.+.|...|.+|++. .+.....|...+.+..+.++ ++.|.+.|+++++..|+++..|..++.
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            4457888888888889999999999999987 44456777777777777654 899999999999999999998888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPT---NKRASLSADRLR  438 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~  438 (442)
                      .....|+.+.|...|++++...|+   ...++......+
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE  551 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE  551 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            888899999999999999998884   344555544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.56  E-value=0.0006  Score=68.11  Aligned_cols=111  Identities=13%  Similarity=-0.026  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHHhcCHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----------GN-----------NATYYSNRAAAYLESGSFLQAE  380 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~~~~~~~~~~~~~~A~  380 (442)
                      |.....+...+......|++++|...|+++++.-           |.           ...+|...+.+....++.+.|.
T Consensus       375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR  454 (679)
T 4e6h_A          375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR  454 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence            3334444455555555555555555555555431           21           1224444444444455555555


Q ss_pred             HHHHHHHhc-CCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHH
Q 013459          381 ADCTKAINL-DKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLS  433 (442)
Q Consensus       381 ~~~~~~l~~-~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~  433 (442)
                      +.|.++++. .+.....|...+.+-.+.+ +++.|.+.|+++++..|+++..+..
T Consensus       455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~  509 (679)
T 4e6h_A          455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK  509 (679)
T ss_dssp             HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence            555555544 2223344444444433332 2555555555555555555555433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.54  E-value=0.00022  Score=62.03  Aligned_cols=70  Identities=10%  Similarity=-0.015  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCcc
Q 013459          324 QSAEIAKEKGNQAYKD-----KQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      .+..++..+|..|.+.     |+.++|.++|+++++++|+. ...++.+|..+.. .++++++.+.+++++..+|..
T Consensus       197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            3677999999999995     99999999999999999975 9999999999988 499999999999999998864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.53  E-value=9.4e-05  Score=69.00  Aligned_cols=87  Identities=15%  Similarity=0.173  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..|..+|..++..|+|++|+.+|.++        ..|..++.|+.++|+|++|++.++++     .++..|.....++..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            48999999999999999999999977        45788999999999999999999999     478999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCC
Q 013459          407 LGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      .|+++.|..+..+ +..+|++
T Consensus       190 ~~ef~lA~~~~l~-L~~~ad~  209 (449)
T 1b89_A          190 GKEFRLAQMCGLH-IVVHADE  209 (449)
T ss_dssp             TTCHHHHHHTTTT-TTTCHHH
T ss_pred             cCcHHHHHHHHHH-HHhCHhh
Confidence            9999999877665 3344443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.51  E-value=0.0017  Score=50.10  Aligned_cols=109  Identities=15%  Similarity=-0.112  Sum_probs=88.7

Q ss_pred             chHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQW------LKAISFYTEAIKLNGNN--------ATYYSNRAAAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~~l  387 (442)
                      .|.+.+.|.......-+.|+.      ++-.+.|++++..-|..        ...|...+.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            356677788777777777877      78888999999876642        3455566654 56799999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459          388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      ++.......|...|.--..+|+...|.+.+.+++.+.|...+..
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            88877888998899988899999999999999999999877654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.14  E-value=0.0054  Score=48.33  Aligned_cols=81  Identities=16%  Similarity=0.097  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC---C----------------------CHHHHHHHHHHHHHhcCHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------------NATYYSNRAAAYLESGSFL  377 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~----------------------~~~~~~~~~~~~~~~~~~~  377 (442)
                      ....+.+..+|..++..++|.+|...|+++++...   .                      +.+..+.++.||.++++++
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            45678899999999999999999999999987521   1                      1268899999999999999


Q ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          378 QAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       378 ~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      +|+..++..-. ....++....+|..|
T Consensus       140 ~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            99999876522 234577777788766

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.89  E-value=0.017  Score=55.46  Aligned_cols=111  Identities=9%  Similarity=-0.090  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH----------------------------------
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA----------------------------------  368 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------------------  368 (442)
                      |.....|...+..+...|+.++|...|++++.. |.+...+...+.                                  
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  288 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL  288 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence            555788999999999999999999999999999 987554443332                                  


Q ss_pred             ------HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          369 ------AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       369 ------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                            ...+.++.+.|...|+++ +..+.....|...|..-...+ +.+.|.+.|+++++..|+++..+....
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi  361 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF  361 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence                  222456788899999999 433334566766676665555 699999999999999999887654433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.84  E-value=0.023  Score=52.77  Aligned_cols=62  Identities=11%  Similarity=-0.022  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  422 (442)
                      .+...++..+...|++.+++..+++++..+|.+-.+|..+-.+|...|+..+|++.|+++.+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566788888999999999999999999999999999999999999999999998888654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.60  E-value=0.075  Score=51.10  Aligned_cols=99  Identities=6%  Similarity=-0.074  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGT  402 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~  402 (442)
                      +...|..+-..+.+.|++++|.++|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+.. ..+...|..+-.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            45678889999999999999999999988753 2366788889999999999999999999988654 225667777888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhh
Q 013459          403 AREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      +|.+.|+.++|.+.|++..+.
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHh
Confidence            999999999999999998764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.56  E-value=0.039  Score=43.26  Aligned_cols=96  Identities=14%  Similarity=0.136  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c---------------
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--L---------------  389 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~---------------  389 (442)
                      +.-..++..++-.|+|..++-++.+     -+.....+-...||.++++|+.|+..++..+.  .               
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            3344567788889999999877653     24566777789999999999999999999982  2               


Q ss_pred             CCccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          390 DKKNVKAYLR-RGTAREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       390 ~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      +|.+.+..++ +|.++.+.|+.++|+.++.......|=-
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf  147 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF  147 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence            3555665544 6999999999999999999988877643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.49  E-value=0.05  Score=52.29  Aligned_cols=95  Identities=9%  Similarity=-0.125  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      ....|...+....+.++.+.|...|+++ ...+.....|...+......+ +++.|.+.|+++++..|+++..|..++..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3467888888888888999999999999 443345667777777777766 59999999999999999888888888888


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 013459          404 REMLGYYKEAIEDFSYA  420 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~  420 (442)
                      ....|+.+.|...|+++
T Consensus       364 e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          364 LLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHTCHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            88899999998888886

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.30  E-value=0.19  Score=38.81  Aligned_cols=87  Identities=14%  Similarity=-0.028  Sum_probs=70.5

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ........|...|.. ...++.++|.+.|+.+++++...+.+|...|....++|+...|.+.+.+++.+.|...+. +..
T Consensus        56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~  133 (161)
T 4h7y_A           56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEI  133 (161)
T ss_dssp             TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHH
T ss_pred             cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHH
Confidence            445667777777765 566999999999999999988889999999999999999999999999999999876554 344


Q ss_pred             HHHHHHcCC
Q 013459          401 GTAREMLGY  409 (442)
Q Consensus       401 a~~~~~~~~  409 (442)
                      +..-.+.|.
T Consensus       134 a~~nl~~~~  142 (161)
T 4h7y_A          134 ALRNLNLQK  142 (161)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHhhhcCC
Confidence            544455543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.013  Score=58.56  Aligned_cols=80  Identities=11%  Similarity=0.142  Sum_probs=63.1

Q ss_pred             cHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          341 QWLKAISFYTEAIKL--------NGNN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       341 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +--+|+.++.+.++.        .+.+          ...+..-+..+...|+|+-|++..+++....|.....|+.|+.
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~  379 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR  379 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            445677777777642        2222          2244445677778999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 013459          403 AREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~  420 (442)
                      +|..+|+|+.|+-.++.+
T Consensus       380 vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          380 CHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccHHHHHHHHhcC
Confidence            999999999999877765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.09  E-value=0.11  Score=44.55  Aligned_cols=61  Identities=23%  Similarity=0.272  Sum_probs=54.6

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459          334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  394 (442)
Q Consensus       334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  394 (442)
                      ..+++.++.++|++.....++.+|.|......+..++.-.|+|+.|.+.++.+.+++|...
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            4577889999999999999999999999999999999999999999999999988887653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.86  E-value=0.062  Score=51.23  Aligned_cols=81  Identities=20%  Similarity=0.088  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ..+..+|....-...+..|..+|.+|+.+.|++-..++.+|.+....++.-+|+-+|-|++......+.+.-++...+.+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            45667888888888899999999999999999999999999999999999999999999998777788888888887764


Q ss_pred             c
Q 013459          407 L  407 (442)
Q Consensus       407 ~  407 (442)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.041  Score=55.12  Aligned_cols=63  Identities=10%  Similarity=0.058  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      .....+...+..+...|+|+-|+++.++++...|.+...|+.|+.||.++|+|+.|+-.+.-+
T Consensus       335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            344577888999999999999999999999999999999999999999999999999877654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.96  E-value=0.17  Score=48.29  Aligned_cols=48  Identities=15%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY  370 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  370 (442)
                      |.....++++|..+...+++-+|+-+|.+++......+.+..++...+
T Consensus       183 P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            444555555555555555555555555555555444555555554443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.85  E-value=1.1  Score=35.24  Aligned_cols=66  Identities=12%  Similarity=0.052  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--h---------------CCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK--L---------------NGNNAT-YYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      .+...+..+.|+.+.++|..|+..+++.+.  .               +|.+.+ .+..+|.++.+.|+-+||+.++.+.
T Consensus        61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S  140 (242)
T 3kae_A           61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS  140 (242)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence            456677789999999999999999999993  2               234444 4556799999999999999999987


Q ss_pred             HhcC
Q 013459          387 INLD  390 (442)
Q Consensus       387 l~~~  390 (442)
                      ...+
T Consensus       141 f~~~  144 (242)
T 3kae_A          141 FGKS  144 (242)
T ss_dssp             HHHC
T ss_pred             cCCc
Confidence            6654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.25  Score=46.44  Aligned_cols=103  Identities=10%  Similarity=-0.104  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccH----H
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNV----K  395 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~----~  395 (442)
                      ....+..+|..+++.|++++|.+.|.++......   -.+.+.....++...++|..+...+.++..+.  ..++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            3456788999999999999999999999876432   35778888899999999999999999986552  1122    2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459          396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      .....|.++...++|.+|.++|..++......
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~  241 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI  241 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence            34456777888999999999999988765443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.44  E-value=0.41  Score=44.03  Aligned_cols=98  Identities=12%  Similarity=0.022  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---Ccc----H
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NN----ATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKN----V  394 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~----~  394 (442)
                      .-..+|..|+..|+|.+|.+.+.+..+.-.  ++    .+.+..-..+|..++++.++...+.++....   +.+    .
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            345789999999999999999998887422  12    3567777889999999999999999886543   111    2


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Q 013459          395 KAYLRRGTARE-MLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       395 ~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p  425 (442)
                      .....-|..+. ..++|.+|..+|-++++...
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            34455688888 89999999999999886544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.32  E-value=0.19  Score=43.07  Aligned_cols=69  Identities=19%  Similarity=0.088  Sum_probs=61.3

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      -+++.++.++|++.+...++.+|.|......+-+.+.-.|+++.|.+.++.+.+++|+.......+..+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999987765444433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.20  E-value=0.17  Score=46.75  Aligned_cols=62  Identities=10%  Similarity=-0.041  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  388 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  388 (442)
                      .+...++..+...|++.+|+..+++++..+|-+..++..+-.++...|+..+|++.|+++.+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566788889999999999999999999999999999999999999999999999998754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.18  E-value=0.5  Score=45.35  Aligned_cols=85  Identities=11%  Similarity=-0.015  Sum_probs=70.0

Q ss_pred             cccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Q 013459          339 DKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAREMLGYYKEAIED  416 (442)
Q Consensus       339 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~  416 (442)
                      .++.++|.++|++..+.. .-+...|..+...|.+.|++++|.+.|++..+.. ..+...|..+-..|.+.|+.++|.+.
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            456889999999887653 2366788999999999999999999999987653 23566777778889999999999999


Q ss_pred             HHHHHhh
Q 013459          417 FSYALVL  423 (442)
Q Consensus       417 ~~~~l~~  423 (442)
                      |++..+.
T Consensus       163 ~~~M~~~  169 (501)
T 4g26_A          163 DAHMVES  169 (501)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.17  E-value=0.073  Score=50.42  Aligned_cols=107  Identities=13%  Similarity=0.027  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHH----------HHHHHHh-----hCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAIS----------FYTEAIK-----LNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~----------~~~~al~-----~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l  387 (442)
                      -.+..|+.....+-..|+..+...          .+-.++.     .+++. ...++.+-..|.+.+.|++|.+...+..
T Consensus       179 l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~  258 (523)
T 4b4t_S          179 INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE  258 (523)
T ss_dssp             ------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence            355667766666666665544321          1222221     12222 4567777899999999999999999985


Q ss_pred             hcCC--cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459          388 NLDK--KN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       388 ~~~p--~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      -...  .+   ...+|.+|.++.-+++|.+|.+++..|+...|.+..+
T Consensus       259 fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a  306 (523)
T 4b4t_S          259 YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS  306 (523)
T ss_dssp             SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence            3211  12   4567888999999999999999999999998876543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.03  E-value=1.5  Score=41.23  Aligned_cols=106  Identities=12%  Similarity=0.050  Sum_probs=80.3

Q ss_pred             ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-C-CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Q 013459          318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-N-GNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN---  388 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---  388 (442)
                      +..-....+.....++..+...|+|.+|...+.....- . ..+    ...+.....+|...+++.+|...+.++..   
T Consensus       129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~  208 (445)
T 4b4t_P          129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF  208 (445)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence            34334556777888999999999999999999887532 1 111    35677778899999999999999998742   


Q ss_pred             cCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459          389 LDKKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVL  423 (442)
Q Consensus       389 ~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  423 (442)
                      -.+..    ...+...|..+...++|.+|.++|..+++.
T Consensus       209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            12222    345566788999999999999999998865

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.49  E-value=1.5  Score=45.30  Aligned_cols=102  Identities=6%  Similarity=-0.139  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAY  397 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~  397 (442)
                      ......|..+-..+.+.|+.++|..+|++.-+.    -.-+...|+.+-..|.+.|++++|.+.|++..+.. ..|.-.|
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            345567888999999999999999999775432    23467889999999999999999999999987653 2245555


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 013459          398 LRRGTAREMLGY-YKEAIEDFSYALVLE  424 (442)
Q Consensus       398 ~~~a~~~~~~~~-~~~A~~~~~~~l~~~  424 (442)
                      ..+-.++.+.|+ .++|.+.|++..+..
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            566667888887 578889999887653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.77  E-value=0.82  Score=36.57  Aligned_cols=19  Identities=16%  Similarity=-0.095  Sum_probs=12.4

Q ss_pred             HHHHHcCCHHHHHHHHHHH
Q 013459          402 TAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~  420 (442)
                      .++..+|+++++++.|.+.
T Consensus        97 ~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           97 LNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHC
Confidence            3456677777777776553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.28  E-value=0.6  Score=47.59  Aligned_cols=80  Identities=20%  Similarity=0.078  Sum_probs=50.6

Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHH----
Q 013459          335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--------DKKNVKAYLRRGT----  402 (442)
Q Consensus       335 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~----  402 (442)
                      .++..|++++|.+..+     .-++...|..+|..+.+.++++.|+++|.++-..        ...+.+.+..++.    
T Consensus       661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455666666666533     2356788999999999999999999999885221        1233333333332    


Q ss_pred             ---------HHHHcCCHHHHHHHHHH
Q 013459          403 ---------AREMLGYYKEAIEDFSY  419 (442)
Q Consensus       403 ---------~~~~~~~~~~A~~~~~~  419 (442)
                               +|.++|++++|++.|.+
T Consensus       736 ~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          736 TGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHcCCHHHHHHHHHH
Confidence                     45556667777666554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=90.70  E-value=3.8  Score=37.62  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhc----CC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCChHHHHHHH
Q 013459          365 NRAAAYLESGSFLQAEADCTKAINL----DK--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE---PTNKRASLSAD  435 (442)
Q Consensus       365 ~~~~~~~~~~~~~~A~~~~~~~l~~----~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~  435 (442)
                      .++..|+..|+|.+|.+.+.+.++-    +.  .-.+.+..-..+|..++++.++.+.+.++....   +.++.....+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6899999999999999999887753    21  124677777889999999999999999987654   23444444433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.49  E-value=2.8  Score=41.16  Aligned_cols=98  Identities=12%  Similarity=-0.029  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      ........++..++..+...++...+.+...... +......++...++.++++.|..++++.-..........|.+|.+
T Consensus       250 ~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra  328 (618)
T 1qsa_A          250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADL  328 (618)
T ss_dssp             HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHH
Confidence            3444555566666666745677777777665443 333344444455678999999999988766444568889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHh
Q 013459          404 REMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~  422 (442)
                      +..+|+.++|...|+++.+
T Consensus       329 ~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          329 LLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhc
Confidence            9999999999999999875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=89.68  E-value=3  Score=33.29  Aligned_cols=29  Identities=10%  Similarity=-0.096  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAI  353 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al  353 (442)
                      +...|..+|...+.+|+++-|+.+|.++-
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            34578888888888888888888887653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.48  E-value=3.7  Score=41.65  Aligned_cols=86  Identities=19%  Similarity=0.004  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  396 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  396 (442)
                      +...|..+|..+.+.++++.|+++|.++-..        ...+.+.+..++....+.|+++.|...|.+.=+     .  
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~-----~--  752 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGD-----I--  752 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----H--
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCC-----H--
Confidence            3568899999999999999999999986322        234445555666666666777766665544211     1  


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Q 013459          397 YLRRGTAREMLGYYKEAIEDFS  418 (442)
Q Consensus       397 ~~~~a~~~~~~~~~~~A~~~~~  418 (442)
                       ...-.+|.+++++++|...-+
T Consensus       753 -~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          753 -QGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHcCChHHHHHHHH
Confidence             112345777788887766544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.88  E-value=1.8  Score=46.26  Aligned_cols=93  Identities=13%  Similarity=0.064  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhh---C--------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459          328 IAKEKGNQAYKDKQWLKAISFYTEAIKL---N--------------------GNNATYYSNRAAAYLESGSFLQAEADCT  384 (442)
Q Consensus       328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~--------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~  384 (442)
                      ..|.+|++++..|++++|..+|+++-.-   +                    ......|+....++.+.+.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4588999999999999999999887321   0                    0113456666778888899999999999


Q ss_pred             HHHhcCC-ccH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459          385 KAINLDK-KNV----KAYLRRGTAREMLGYYKEAIEDFSYA  420 (442)
Q Consensus       385 ~~l~~~p-~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~  420 (442)
                      .|++..+ ++.    ..|.++-..+.++++|++|...+...
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9997653 322    25677788889999999998776543

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=84.79  E-value=2.4  Score=39.75  Aligned_cols=64  Identities=9%  Similarity=-0.060  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcC--------Cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 013459          364 SNRAAAYLESGSFLQAEADCTKAINLD--------KK--NVKAYLRRGTAREMLGYYKEAIEDFSYALVL-EPTN  427 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--------p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~  427 (442)
                      ..+-.+|+++++...|...++..-...        |.  ....+|.+|..+...++|.+|.+++.+|++. .|.+
T Consensus       180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            345577888888877777775443221        21  2457778888888888888888888888888 7755

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.73  E-value=20  Score=31.55  Aligned_cols=95  Identities=11%  Similarity=-0.072  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcC
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGS--------FLQAEADCTKAINLD  390 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~  390 (442)
                      +-.+.++.-+..+++.|++.-|.++..-.++.     .+-+......+..++.....        .++|+++-.+.-...
T Consensus        51 eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~  130 (312)
T 2wpv_A           51 HAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYK  130 (312)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCT
T ss_pred             HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCC
Confidence            34445555566666666666555543333322     12233344444444322211        233444433332222


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013459          391 KKNVKAYLRRGTAREMLGYYKEAIEDFS  418 (442)
Q Consensus       391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~  418 (442)
                      -.+++.+..+|..|.+.+++.+|..+|-
T Consensus       131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          131 FGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            3568899999999999999999998874

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.17  E-value=11  Score=39.32  Aligned_cols=95  Identities=15%  Similarity=0.023  Sum_probs=70.9

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C--------------------
Q 013459          332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-D--------------------  390 (442)
Q Consensus       332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--------------------  390 (442)
                      +...+...+.++-|.    +.+..-|.++..-|.+|.+|...|++++|..+|+++-.- .                    
T Consensus       816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            556677777777553    345667788888899999999999999999999986421 0                    


Q ss_pred             Cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHH
Q 013459          391 KK--NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE-PTNKRA  430 (442)
Q Consensus       391 p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~  430 (442)
                      +.  ....|.....++.+.+-++.+++..+.|++.- ++++..
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l  934 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL  934 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence            11  12356667888999999999999999999754 455543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.06  E-value=2.3  Score=40.38  Aligned_cols=69  Identities=13%  Similarity=0.028  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      ...+..+..+-+.|...+.|++|..+..++.  .|..       ...++.+|.++.-.++|.+|.+++..|++..|.+
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            4567788888999999999999999999884  4432       3556678999999999999999999999876643

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.96  E-value=25  Score=31.26  Aligned_cols=40  Identities=13%  Similarity=-0.042  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013459          378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF  417 (442)
Q Consensus       378 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~  417 (442)
                      +|+++-.+.-...-.+++.+..+|..|.+.+++.+|..+|
T Consensus       120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            4444444322222356888899999999999999999887

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.78  E-value=14  Score=28.10  Aligned_cols=57  Identities=11%  Similarity=-0.014  Sum_probs=46.8

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       368 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      ......|+-++-.+.+...+.-++-+++.++.+|.+|.+.|+..+|.+.+.+|-+..
T Consensus        99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            455677888888888888777777789999999999999999999999999987653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.04  E-value=4.1  Score=38.03  Aligned_cols=66  Identities=14%  Similarity=0.043  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      -..++..+|..|.+.|++++|.+.|.++....   ....+.++..-.++...+++..+...+.++..+.
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~  198 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI  198 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence            34578889999999999999999999987653   3346788888999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	2e-37
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	9e-37
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-20
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-06
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	1e-18
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-17
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	1e-13
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-13
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-11
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	4e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-11
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-11
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-08
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	4e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	9e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.004
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	2e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.001

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  139 bits (352), Expect = 2e-37
 Identities = 70/330 (21%), Positives = 135/330 (40%), Gaps = 30/330 (9%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGGSS G+A AV+A +V  +LG DT G VR P++ CG++G++P+YG VS  G++  ++S
Sbjct: 137 VPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASS 196

Query: 61  LDTVGWFARDPK-ILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVI-- 117
           LD +G   +  +     +  +  +    A    R++    +  E +      V + +   
Sbjct: 197 LDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEH 256

Query: 118 ---KSTEKLFGRQVLKHENLG-EYFDSKVPSLKGFHKT-----------NGELKNVMRLI 162
              +   + F   +   E LG +    K+P +K    T           N    + ++  
Sbjct: 257 DIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYG 316

Query: 163 QRYEFKNNHNEWIESVKPALDPDISAEIGEML-----EISETVIENCKSIRNEMRSAISS 217
            R + K     ++++       ++   I            E        +R ++   ++ 
Sbjct: 317 LRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNE 376

Query: 218 LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP 277
           +L     ++TPT+     K+G  +     Y    F+    A+++G   ++VP G+ +  P
Sbjct: 377 VLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFT--IPANLAGLPAISVPFGFSNNLP 434

Query: 278 TSVSFIARHGGDRFLLDTVQNMYASLQEQA 307
             V  I R   D  +        A   E+ 
Sbjct: 435 VGVQVIGRRFADGKVFR-----IARAIEKN 459

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  138 bits (348), Expect = 9e-37
 Identities = 69/320 (21%), Positives = 130/320 (40%), Gaps = 28/320 (8%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
           +PGGSS G+A AVAA LV  SLG DT G +R P+A+CG++G +P+YG VS  G++  ++S
Sbjct: 150 VPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASS 209

Query: 61  LDTVGWFARDPK----ILRHVGHVLLQLPFAAQRSPRQIIIA-DDCFELLKI--PADRVV 113
           LD +G   R+ K    +L  +    +    +A               + LK+  P + + 
Sbjct: 210 LDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLG 269

Query: 114 QVVIKSTEKLFGRQVLKHENLG-EYFDSKVPSLK------------GFHKTNGELKNVMR 160
           + V    ++     V   ++LG    +  +P+ K                       +  
Sbjct: 270 EGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRY 329

Query: 161 LIQRYEFKNNHNEWIESVKPALDPDISAEIGEML-----EISETVIENCKSIRNEMRSAI 215
                E  +    +  S       ++   I            +   +  + +R  +++  
Sbjct: 330 GYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDF 389

Query: 216 SSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL-SIASVSGCCQVTVPLGYYD 274
             + ++  ++V PT       LG  E + +     A  LL +  +++G   ++VP G  +
Sbjct: 390 DKVFENYDVVVGPTAPTTAFNLG--EEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSN 447

Query: 275 KCPTSVSFIARHGGDRFLLD 294
             P  + FI +   ++ L  
Sbjct: 448 GRPIGLQFIGKPFDEKTLYR 467

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.6 bits (213), Expect = 2e-20
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           +A+ LD ++VKA+   G  +  +  Y EAI +   A  L    +  
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 11/107 (10%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
           G    + + + +AI+    A  L       + +   + L       A+     +I   + 
Sbjct: 79  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKRWNSIEERRI 133

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
           + ++ L     R +    +  +E+          +         +  
Sbjct: 134 HQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score = 85.6 bits (210), Expect = 1e-18
 Identities = 78/335 (23%), Positives = 120/335 (35%), Gaps = 40/335 (11%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
            P GSSSG+AVAVAA+L   ++G +T G +  P+A  G++G +P+ G VS  GIIPIS S
Sbjct: 157 SPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFS 216

Query: 61  LDTVGWFARDPKILRHVGHVLLQL-PFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKS 119
            DT G  AR       V   +          +        D    L     R  ++ +  
Sbjct: 217 QDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQ 276

Query: 120 TEKLFGRQV--LKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES 177
           T  L  R +  L  +   E   +    +       G      R +  YEFK     +  +
Sbjct: 277 TPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNT 336

Query: 178 VKPAL-----------------------DPDISAEIGEMLEISETVIENCKSIRNEMRSA 214
            +  L                       +  + A+    L     +     + R      
Sbjct: 337 HRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEG 396

Query: 215 ISSLLKDDGI--LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 272
           I + L    +  LV PTT    P     +    +         S A+V+G   +TVP+G 
Sbjct: 397 IDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGES-------YSAAAVAGYPSLTVPMGQ 449

Query: 273 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQA 307
            D  P  + F+     +  L++      A   EQ 
Sbjct: 450 IDGLPVGLLFMGTAWSEPKLIE-----MAYAYEQR 479

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 7e-17
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 384 TKAINLDKKNV-------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
            KAI + ++N        KAY R G +      YK+AI  ++ +L    T  
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 67.7 bits (164), Expect = 5e-14
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------------NGNNATYYSNRAA 368
           + A I KEKG   +K  ++++A+  Y + +                        + N A 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
            YL+   + +A   C KA+ LD  N K   RRG A+ ++  ++ A  DF   L + P NK
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132

Query: 429 RASLSADRLRK 439
            A L     +K
Sbjct: 133 AARLQIFMCQK 143

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 11/80 (13%), Positives = 27/80 (33%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 391 KKNVKAYLRRGTAREMLGYY 410
               +AY   G   +  G  
Sbjct: 64  PLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 6e-13
 Identities = 22/109 (20%), Positives = 42/109 (38%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
           Q    +      N   +     +A   Y  A++L   +A   +N A    E G+  +A  
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
              KA+ +  +   A+    +  +  G  +EA+  +  A+ + PT   A
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 8e-13
 Identities = 26/105 (24%), Positives = 39/105 (37%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
           A +        Y+      AI  Y  AI+L  +    Y N A A  E GS  +AE     
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
           A+ L   +  +       +   G  +EA+  +  AL + P    A
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 15/76 (19%), Positives = 30/76 (39%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 393 NVKAYLRRGTAREMLG 408
              AY   G   + + 
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 27/104 (25%), Positives = 43/104 (41%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
                +     GN   + + + +A++ Y  A+ L+ N+A  + N A  Y E G    A  
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
              +AI L      AY     A +  G   EA + ++ AL L P
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 11/66 (16%), Positives = 19/66 (28%)

Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
             A    ++G F  AE  C +    +  N    L   +          +    + A+   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 425 PTNKRA 430
           P    A
Sbjct: 64  PLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%)

Query: 334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
           N      +  +A + Y +AI+   N A  +SN    +   G    A     KA+ LD   
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

Query: 394 VKAYLRRGTAREMLGYYKEAIEDF 417
           + AY+  G   +    +  A+  +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAY 226

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-- 377
             Q   A      G       +   AI  + +A+ L+ N          AY+  G+ L  
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD-------AYINLGNVLKE 215

Query: 378 -----QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                +A A   +A++L   +   +          G    AI+ +  A+ L+P    A
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 374
           + A       +   +  +  +A+  Y EAI+++   A  YSN      E  
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL 371
           +  +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y 
Sbjct: 29  EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 64/307 (20%), Positives = 110/307 (35%), Gaps = 24/307 (7%)

Query: 1   MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
            PGGSSSG+A AV A ++  +LG  T G V  P+A+CG    +PS+  +  +G+   S +
Sbjct: 127 SPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWA 186

Query: 61  LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
           LDTVG F    + L      +      +   P +        +      +   +  +++ 
Sbjct: 187 LDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAA 246

Query: 121 EKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKP 180
            K   R     +                 +   E   +  +IQ +E              
Sbjct: 247 IKAAERAGASVQA------------IDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHD 294

Query: 181 ALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGK 240
            + P + A +   + ++    +  + I    R  +  + +   +L+T +     P     
Sbjct: 295 EIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKAL- 353

Query: 241 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMY 300
               +   NR ++L+      G   V VP+      P  V  IAR G D   L T     
Sbjct: 354 ASTGDPRYNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT----- 402

Query: 301 ASLQEQA 307
           A   E A
Sbjct: 403 AWFLEDA 409

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 44/116 (37%), Positives = 67/116 (57%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 8   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 67

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
           T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K
Sbjct: 68  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 16/122 (13%), Positives = 37/122 (30%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
           N  +      E+G +  ++     A+  +  A++ +  +   +        E+   L A 
Sbjct: 14  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73

Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
           +   + + L   N  A +    +       ++A E     L   P        A+     
Sbjct: 74  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133

Query: 441 FM 442
             
Sbjct: 134 AG 135

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 20/98 (20%), Positives = 43/98 (43%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
           G       ++ KA+  +T A+ +  N+   ++   A         +A A   +A+ L   
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            +++    G +   LG ++EA+E F  AL ++  ++  
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-11
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEA---------------IKLNGNNATYYSNRAA 368
           + + I KE+G   +K+ ++ +A+  Y +                 K        + N A 
Sbjct: 11  EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 70

Query: 369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
            +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  DF   L L P NK
Sbjct: 71  CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 130

Query: 429 RASLSADRLRK 439
            A       ++
Sbjct: 131 AAKTQLAVCQQ 141

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 6e-11
 Identities = 31/139 (22%), Positives = 59/139 (42%)

Query: 301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 360
             + +   I+   K   NTF + Q+ E+A +K  +  +  +  +A +   +  KL     
Sbjct: 18  KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL 77

Query: 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
           +   N  A  L+   +  A   C +A+ +D  N KA  RR    + L  Y +A+ D   A
Sbjct: 78  SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 137

Query: 421 LVLEPTNKRASLSADRLRK 439
             + P +K       ++++
Sbjct: 138 QEIAPEDKAIQAELLKVKQ 156

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 58.5 bits (140), Expect = 6e-11
 Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 310 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----------------AI 353
           A KS        + QSA   KE+GN+ +K  +  +AI  Y E                  
Sbjct: 1   AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 60

Query: 354 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 413
           K      +   N A  Y ++  + +A    +K + +DK NVKA  + G A    G+ +EA
Sbjct: 61  KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 120

Query: 414 IEDFSYALVLEPTNKRASLSADRLRK 439
            E+   A  L P N     S +    
Sbjct: 121 KENLYKAASLNPNNLDIRNSYELCVN 146

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 6e-11
 Identities = 37/107 (34%), Positives = 54/107 (50%)

Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
           +     KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            K ++L     K Y R+  A E L  ++EA   +   L  E  N + 
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 107

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 7e-11
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
           +G  A   K W  A+  ++        ++    N    Y    +  +AE   T++IN DK
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
               AY +RG        Y  AI+D   AL+    N
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 16/127 (12%)

Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
           Q   + I    G      K   +A   +T +I  + + A  Y  R   Y ++  +  A  
Sbjct: 32  QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91

Query: 382 DCTKAINLDKKN----------------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           D  +A+   + N                 +              +K+A E  + A  ++ 
Sbjct: 92  DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151

Query: 426 TNKRASL 432
             + + +
Sbjct: 152 EPRHSKI 158

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386
           ++A +   +A    +  + I +    ++          N A  Y +   + +AE     A
Sbjct: 87  DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

Query: 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
            ++  +   + +             +A+E      + EP
Sbjct: 147 TSMKSEPRHSKI------------DKAMECVWKQKLYEP 173

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 57.0 bits (137), Expect = 7e-10
 Identities = 18/102 (17%), Positives = 37/102 (36%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
              A  + Q  +A+    EAIK +  +A+  S+        G F +A+    ++I L  +
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434
            +    +     +     K+  +  + A VL    +      
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV 104

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 20/65 (30%)

Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
           +    L  G   QA     +AI    K+            + G ++ A E    ++ L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 426 TNKRA 430
                
Sbjct: 62  EYLPG 66

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 15/99 (15%), Positives = 31/99 (31%)

Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
           E    A+      ++  FY   +                     S L++  +  +    +
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
           K  +   +    A + L Y KE ++ FS    ++P    
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
             K                    + + +++    ++   A Y  +  + +L   S L+ E
Sbjct: 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 330

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 3/104 (2%)

Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--YLESGSFLQAEADCTKAI 387
           + + +           + F    +++N  +   + +R      L   ++ +    C + +
Sbjct: 77  ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 136

Query: 388 NLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
             D++N      RR  A +      E +      +    +N  +
Sbjct: 137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 10/96 (10%), Positives = 28/96 (29%), Gaps = 12/96 (12%)

Query: 344 KAISFYTEAIKLNGNNATYYSNR----------AAAYLESGSFLQAEADCTKAINLDKKN 393
             +   ++ +  N + AT ++ R           +    +             + ++ K+
Sbjct: 47  SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106

Query: 394 VKAYLRRGTAREMLGY--YKEAIEDFSYALVLEPTN 427
              +  R      L    +   +E  +  L  +  N
Sbjct: 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERN 142

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAAYLES 373
           A +A     +     ++ +A +    A++++            G +A  ++  A A    
Sbjct: 9   AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68

Query: 374 GSFLQAEADCTKAI-----------NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
            SF +A     KA+           +  K  + A   R  A + LG   EA+ +F   + 
Sbjct: 69  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128

Query: 423 LEPTNKRASLSADRLRK 439
           +    K  +   +R+ +
Sbjct: 129 MIEERKGETPGKERMME 145

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 338 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKAINLDKKNVKA 396
           +D++  +A     +AI+LN  N T +  R          L       T  I    KN + 
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114

Query: 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
           +  R    E L    + +E  +  L  +  N
Sbjct: 115 WHHRRVLVEWLRDPSQELEFIADILNQDAKN 145

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 1/73 (1%)

Query: 352 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YY 410
            I  +      Y    A         +A      AI L+  N   +  R    + L    
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 411 KEAIEDFSYALVL 423
            E +   +  +  
Sbjct: 95  HEEMNYITAIIEE 107

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 9e-07
 Identities = 11/117 (9%), Positives = 30/117 (25%), Gaps = 2/117 (1%)

Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 373
             + N  N  +S   A            + + +        ++       S       + 
Sbjct: 74  GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ 133

Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
                     + + +   ++    +  G          +A   + +A  L P+N + 
Sbjct: 134 THTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP 188

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 8/79 (10%)

Query: 343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKNVKAY 397
           L++  +  +A  L  +        A  +    +         K +  D      K V+  
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59

Query: 398 LRRGTAREMLGYYKEAIED 416
           L     +  +   +   ++
Sbjct: 60  LWNHAFKNQITTLQGQAKN 78

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 5/102 (4%)

Query: 334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLD 390
           N+    +  LK    +         + +     A   + +       +      + +   
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66

Query: 391 KKN--VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
            K                L  Y++A++     L  EP N +A
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 301 ASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 359
            +LQ++  +A   + L++      + A++  E+G           A + +++A+ +  + 
Sbjct: 11  PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70

Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419
              ++       ++G+F  A       + LD     A+L RG A    G  K A +D   
Sbjct: 71  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 130

Query: 420 ALVLEPTN 427
               +P +
Sbjct: 131 FYQDDPND 138

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 16/95 (16%), Positives = 26/95 (27%)

Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
             Q   +KQ  + +  + E                    E     + +AD T   +L + 
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207

Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
             +     G     LG    A   F  A+     N
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 367 AAAYLESGSFLQAEADCTKAIN----LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
           A     +       A   + +      D +  +    RG   + LG    A  DFS AL 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 423 LEPTNKRA 430
           + P     
Sbjct: 66  IRPDMPEV 73

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------NNATYYSNRAAAYLESGSFL 377
           +AE + E G  AY +  +     +  +A++          +  +     + A  + G   
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLG 408
           +A     K + LD ++ +A         ++ 
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 11/113 (9%)

Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAE 380
           AE    +   A  D    +A      A++              S         G   ++ 
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 381 ADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
           A   +   + +++      + + +++       G+ + A E    A  L    
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	100.0
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	100.0
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	100.0
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	100.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.72
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.69
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.68
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.57
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.55
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.53
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.37
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.2
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.18
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.15
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.13
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.94
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.89
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.88
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.87
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.87
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.69
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.59
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.41
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.28
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.18
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.74
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.62
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.2
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.9
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	83.35
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	80.17

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=2.3e-54  Score=410.41  Aligned_cols=279  Identities=22%  Similarity=0.276  Sum_probs=235.4

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +|||||||+|++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.++++|++||||||++|++.++++
T Consensus       127 ~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~PAa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~  206 (412)
T d1ocka_         127 SPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA  206 (412)
T ss_dssp             CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             cCCCcCCCceeeeecccccccCccccccccccchhhhcchhcccccccccccccccccchhcccccccccHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchhH
Q 013459           81 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL  155 (442)
Q Consensus        81 ~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  155 (442)
                      +.+.+..+   +....++++....+.  ...++++.+.++++++.|+  |+.+ .+.+        .+...      ...
T Consensus       207 i~g~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v-~e~~--------~~~~~------~~~  269 (412)
T d1ocka_         207 MTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEPAAEQGLQAAIKAAERAGASV-QAID--------LPEAV------HEA  269 (412)
T ss_dssp             HHCCGGGSSCCCCSSCEEEECCCGGG--CCCCHHHHHHHHHHHHHHHHTTCEE-EECC--------CCHHH------HHH
T ss_pred             hcCCCcccccCCcccccccccccccc--ccchhHHHHHHHHHHHHHHHhhhcc-cccc--------ccchh------hhh
Confidence            98766433   344566776655432  3456889999999999997  4333 2211        12111      113


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCC
Q 013459          156 KNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP  235 (442)
Q Consensus       156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~  235 (442)
                      ...+..+...|....+..++....+.+.+.+..++..+...+..+|.++++.|..++++|.++|+++|+||+|++|.++|
T Consensus       270 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap  349 (412)
T d1ocka_         270 WRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAP  349 (412)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCC
T ss_pred             hhhhhhhhhHHHHHHHHHhhccccccchhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHcCCCEEEeCCCCCCCc
Confidence            34455556677788888888888888999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          236 KLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      .........       ..||.++|++|+|+++||++..+|+|+|+|++++++.|..+++++..+|+.+
T Consensus       350 ~~~~~~~~~-------~~~t~~~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL~~A~~~E~al  410 (412)
T d1ocka_         350 AKALASTGD-------PRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDAL  410 (412)
T ss_dssp             BGGGCCCCC-------CTTTHHHHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccCC-------hHHhHHHHHHCCCeEEEeccCCCCceEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            765432221       2368999999999999999988999999999999999999999999999875

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.7e-53  Score=411.38  Aligned_cols=284  Identities=24%  Similarity=0.347  Sum_probs=219.2

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       150 ~~GGSSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~  229 (485)
T d2f2aa1         150 VPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEA  229 (485)
T ss_dssp             CCCSSSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHH
T ss_pred             ccCCccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459           81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  141 (442)
Q Consensus        81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~  141 (442)
                      +.+.+..+                 ...+.||++..++..  ...++++.++++++++.|+  |+.+ +++++       
T Consensus       230 ~~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~i~~a~~~a~~~L~~~G~~v-~ev~l-------  299 (485)
T d2f2aa1         230 ISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVV-EEVSL-------  299 (485)
T ss_dssp             HBSCBTTBTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEE-EEECC-------
T ss_pred             cccccccccccCCCCccchhhhhcCCccCCEEEEEccccc--CcCCHHHHHHHHHHHHHHHHCCCEE-EEeCC-------
Confidence            98643221                 234678888776643  2356789999999999997  4444 23333       


Q ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHhhHH-------------------HHHhhCCCCCHhHHHHHHhc-----ccCC
Q 013459          142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNE-------------------WIESVKPALDPDISAEIGEM-----LEIS  197 (442)
Q Consensus       142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-----~~~~  197 (442)
                       |.+..       ....+..+...++...+..                   +...+...+.+.+..++..+     ....
T Consensus       300 -p~~~~-------~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (485)
T d2f2aa1         300 -PNTKF-------GIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYY  371 (485)
T ss_dssp             -TTGGG-------HHHHHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTT
T ss_pred             -Cchhh-------hHHHHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhH
Confidence             32211       1111222222333222211                   11122234667777666543     3345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCc
Q 013459          198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP  277 (442)
Q Consensus       198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp  277 (442)
                      ...+.++++.|..++..++++|+++|+||+||++.+||.++.......... ....||.++|++|+|+++||+|..+|+|
T Consensus       372 ~a~~~~~~~~~~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~G~~dGlP  450 (485)
T d2f2aa1         372 DAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRP  450 (485)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCEEEeCCCCCCCCCcccccCCHHHHh-hhhHHHHHHHHHCCCeEEEECCCCCCCC
Confidence            567888899999999999999999999999999999999886544333222 3345899999999999999999889999


Q ss_pred             eeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          278 TSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       278 ~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      +|+|+++++++|..+++++..+|+..
T Consensus       451 vGlQiig~~~~D~~LL~~A~~~E~~~  476 (485)
T d2f2aa1         451 IGLQFIGKPFDEKTLYRVAYQYETQY  476 (485)
T ss_dssp             EEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred             EeEEEECCCCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999988753

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.6e-53  Score=410.57  Aligned_cols=283  Identities=22%  Similarity=0.354  Sum_probs=213.7

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus       137 ~~GGSSgGsaaavAag~~~~a~GtD~gGSiR~PA~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v  216 (475)
T d2gi3a1         137 VPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI  216 (475)
T ss_dssp             CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             ccCcccccchhhhhhcCcceEeecCCCccchhhhHHhCceeecCCCCCCCCCCCCCCCCCCCccCCccCCHHHHHHHhhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459           81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV  142 (442)
Q Consensus        81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~  142 (442)
                      +.+.+..+                ...+.|+++..+...  ...++++.++++++++.|+  |+.+ +++++        
T Consensus       217 ~~g~d~~d~~s~~~~~~~~~~~~~~~~~~ri~~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~V-~ev~~--------  285 (475)
T d2gi3a1         217 ISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKV-ERVKI--------  285 (475)
T ss_dssp             HBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEE-EEECC--------
T ss_pred             hhccccccccccccccccchhccccccccceeeeecccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEeCC--------
Confidence            98654322                234567777665442  3356789999999999997  5544 23333        


Q ss_pred             CchhhhhccchhHHHHHHHHHHHHHHHhhHH------------------HHHhhCCCCCHhHHHHHHhcccCCH-----H
Q 013459          143 PSLKGFHKTNGELKNVMRLIQRYEFKNNHNE------------------WIESVKPALDPDISAEIGEMLEISE-----T  199 (442)
Q Consensus       143 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~  199 (442)
                      |.+..       ....+..+...|+..++..                  +.......+.+.+..++..+.....     .
T Consensus       286 p~~~~-------~~~~~~~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  358 (475)
T d2gi3a1         286 PHIKY-------SVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEA  358 (475)
T ss_dssp             TTGGG-------HHHHHHHHHHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHH-------HHHHHHHHHHHHHHHHHHHhhcchhhhhcccccHHHHHHhhhhcccCHHHHHHHHhcchhhchHHHHH
Confidence            32221       1122222333333322211                  1222223455666666655443322     3


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCcee
Q 013459          200 VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTS  279 (442)
Q Consensus       200 ~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g  279 (442)
                      .+.++.+.|..++..+.++|+++|+||+||++.++|+++...... .+ ..+..||.++|++|+|+++||+|..+|||+|
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~-~~-~~~~~~t~~~Nl~G~PaisvP~G~s~GlPvG  436 (475)
T d2gi3a1         359 YFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPL-TY-YLMDIFTIPANLAGLPAISVPFGFSNNLPVG  436 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHH-HH-HTTTTTTHHHHHHTCCEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccccchH-HH-hhhhHHHHHHHHHCCCeEEEeCCCCCCCCEe
Confidence            345567788889999999999999999999999999987643222 22 2334578999999999999999998999999


Q ss_pred             EEEecccCCcHHHHHHHHHHHHHH
Q 013459          280 VSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       280 ~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                      +|+++++++|..+++++..+|+..
T Consensus       437 vQlig~~~~D~~LL~~A~~~E~~~  460 (475)
T d2gi3a1         437 VQVIGRRFADGKVFRIARAIEKNS  460 (475)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999998753

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.6e-50  Score=393.28  Aligned_cols=290  Identities=20%  Similarity=0.225  Sum_probs=211.9

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCC----CCcccccccCCHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRH   76 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~----~~d~~Gp~ar~~~d~~~   76 (442)
                      +|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|+.|.++    ++|++||||||++|++.
T Consensus       177 ~~GGSSgGsaaavaag~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~  256 (537)
T d1mt5a_         177 SPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLAL  256 (537)
T ss_dssp             CCCSSSHHHHHHHGGGSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHH
T ss_pred             ccCCCcCCccccccccccccccccccccccchhhhhcCceeeeccccccCCCCCCCcccccccccccCCCccchHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999988754    67999999999999999


Q ss_pred             HHHHhhCCCc------------c----cCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459           77 VGHVLLQLPF------------A----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF  138 (442)
Q Consensus        77 ~~~~~~~~~~------------~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~  138 (442)
                      +++++.+.+.            .    ....+.||++..+...  ..+++++.++++++++.|+  |+.++ ++.++...
T Consensus       257 ~l~~l~g~d~~d~~~~~~~~~~~~~~~~~~k~lRIg~~~~~~~--~~~~p~v~~a~~~a~~~L~~~Ga~Vv-ev~~~~~~  333 (537)
T d1mt5a_         257 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNY--TMPSPAMRRALIETKQRLEAAGHTLI-PFLPNNIP  333 (537)
T ss_dssp             HHHHHSSHHHHHSCTTSCCCCCCHHHHSCCSCCEEEECSCCSS--SCCCHHHHHHHHHHHHHHHHTTCEEE-ECCCTTHH
T ss_pred             HHHHhcCCCccccccccCcchhhhhhhhcccccceeeeccccc--ccccHHHHHHHhhhHHhhccccceEE-ecCCcchH
Confidence            9999975321            0    1345678888765432  3467899999999999997  55552 22222110


Q ss_pred             cccCCchhhhhcc--chhHHHHHH--------------HHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHH
Q 013459          139 DSKVPSLKGFHKT--NGELKNVMR--------------LIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIE  202 (442)
Q Consensus       139 ~~~~p~~~~~~~~--~~~~~~~~~--------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (442)
                      .    .+..+...  ..+....+.              .....+......+.+......+.+.+...+..+...+..+|.
T Consensus       334 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (537)
T d1mt5a_         334 Y----ALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLW  409 (537)
T ss_dssp             H----HHHTTHHHHHSTTTTHHHHGGGTTCCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSCCBHHHHH
T ss_pred             H----HHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHhcccchHHHHH
Confidence            0    00000000  000000000              000000001112223333345667777788888888999999


Q ss_pred             HHHHHHHHHHHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCcc--------
Q 013459          203 NCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY--------  272 (442)
Q Consensus       203 ~a~~~r~~~~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~--------  272 (442)
                      ++...|..+++.+.+.|+  ++|+||+|+++ ++++++.....     ...+.||.+||++|+|+++||+|.        
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~-----~~~~~~T~~~NllG~PaisvP~g~v~~~~~~~  483 (537)
T d1mt5a_         410 KLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRA-----TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQ  483 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEEEECCC-SCCCSSCGGGC-----GGGGHHHHHHHHTTCCEEEEEEEECCTTTTTG
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCEEEeCCCC-CccCcCChhhh-----hcccchHHHHHHhCCCeEEEEcCccccccccc
Confidence            999999999999999996  58999999987 45554432211     234568999999999999999985        


Q ss_pred             ---------------------C-CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459          273 ---------------------Y-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  303 (442)
Q Consensus       273 ---------------------~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~  303 (442)
                                           . +|||+|+|+++++++|+.+++++..+|+.+
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L  536 (537)
T d1mt5a_         484 MELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM  536 (537)
T ss_dssp             GGSCCCSSCSHHHHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence                                 2 699999999999999999999999998864

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=1e-48  Score=380.55  Aligned_cols=277  Identities=25%  Similarity=0.318  Sum_probs=195.6

Q ss_pred             CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459            1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV   80 (442)
Q Consensus         1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~   80 (442)
                      +||||||||||+||+|+++||+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|++.++++
T Consensus       157 ~~GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~v  236 (490)
T d1m22a_         157 SPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA  236 (490)
T ss_dssp             CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCcchHHHHHHHhhhhccccccccCCccccceecceeEEeeccCccccCCcccccCcccCCCCccccchhhhhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCccc---------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccc
Q 013459           81 LLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEY  137 (442)
Q Consensus        81 ~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~  137 (442)
                      +.+.+..+                     ...+.++++......    ..+.+...+.++++.+.  |+.+ .++++   
T Consensus       237 l~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~a~~~l~~~g~~v-~ev~~---  308 (490)
T d1m22a_         237 IAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVV-VPVEL---  308 (490)
T ss_dssp             HCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEE-EEECC---
T ss_pred             hhcccccCcccchhccccccchhhhccccccccccccccccccc----cccchhhhhhhhHHHHhhcccce-eeccC---
Confidence            98654221                     112233343333221    23456677788888776  4444 22222   


Q ss_pred             ccccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhh---------------------CCCCCHhHHHHHHhcccC
Q 013459          138 FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESV---------------------KPALDPDISAEIGEMLEI  196 (442)
Q Consensus       138 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~  196 (442)
                           |.+...       ...+..+...|+...+..++..+                     ...+.++...........
T Consensus       309 -----p~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (490)
T d1m22a_         309 -----PNQGAW-------AEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGL  376 (490)
T ss_dssp             -----TTTTTT-------HHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCT
T ss_pred             -----CchHHH-------HHHHHHHHHHHHHhhhhhHhhhcccccchHHHHHHHHHhhhhccccccchhhhHHHHHhhcc
Confidence                 322211       12223333444444444444332                     233444555554444445


Q ss_pred             CHHHHHHHHHHHHHHH--HHHHh--hccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCcc
Q 013459          197 SETVIENCKSIRNEMR--SAISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY  272 (442)
Q Consensus       197 ~~~~~~~a~~~r~~~~--~~~~~--~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~  272 (442)
                      ....+..+...++++.  ..++.  .|.++|+||+||++.++|.......       ....+|.++|++|+|+++||+|.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~-------~~~~~t~~~Nl~G~PaisvP~G~  449 (490)
T d1m22a_         377 ADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDD-------FPGESYSAAAVAGYPSLTVPMGQ  449 (490)
T ss_dssp             TCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---C-------CTTCCHHHHHHHTCCEEEEEEEE
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCccccc-------chHHHHHHHHHhCCCEEEEECCC
Confidence            5555555444333332  23333  3578999999999988775543211       12346788999999999999998


Q ss_pred             CCCCceeEEEecccCCcHHHHHHHHHHHHHHH
Q 013459          273 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  304 (442)
Q Consensus       273 ~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~  304 (442)
                      .+|||+|+|+++++++|..+++++..+|+..+
T Consensus       450 ~~GLPvGlQlig~~~~D~~LL~~A~~lE~~~~  481 (490)
T d1m22a_         450 IDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR  481 (490)
T ss_dssp             ETTEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCceeEEEECCCCCHHHHHHHHHHHHHhhC
Confidence            89999999999999999999999999987643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-19  Score=136.99  Aligned_cols=115  Identities=32%  Similarity=0.437  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .+..+...|+.+++.|+|++|+..|+++++.+|+++.+|.++|.+|.++|++++|+..|+++++++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ..+|++++|+..|+++++++|+++.++..++.++.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999998864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4e-18  Score=137.58  Aligned_cols=117  Identities=38%  Similarity=0.625  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  403 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  403 (442)
                      ..+..+...|+.+++.|+|++|+..|+++++++|++..+|+++|.+++.+|++++|+.+|+++++++|++..+|+++|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +..+|++++|+.+|+++++++|++..++..+.++.+.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888777643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=1.3e-16  Score=127.35  Aligned_cols=119  Identities=29%  Similarity=0.344  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------ATYYSNRAAAYLESGSFLQAEADCTKA  386 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~  386 (442)
                      ...+..+...|..+++.|+|.+|+..|++++...+..                ..++.++|.||++++++++|+.+|+++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            4566788999999999999999999999999875542                246788999999999999999999999


Q ss_pred             HhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       387 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      ++++|.+..+|+++|.++..+|++++|+.+|+++++++|+|..+...+..+.+.+
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-16  Score=128.90  Aligned_cols=117  Identities=27%  Similarity=0.352  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAIN  388 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  388 (442)
                      ..+..+...|..++++|+|++|+..|+++++..|..               ..++.++|.||+++|+|++|+.++++++.
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            457788899999999999999999999999987753               35678899999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       389 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ++|.+..+++.+|.+|..+|++++|+.+|+++++++|+++.+...+..+.+.
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.3e-17  Score=136.92  Aligned_cols=104  Identities=36%  Similarity=0.488  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      +++.+.+.|+.+++.|+|++|+..|+++++++|+++.+|.++|.||.++|++++|+.+|+++++++|++..+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      ..+|++++|+..|+++++++|++.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999988544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-16  Score=120.36  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=102.0

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHH
Q 013459          330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE---SGSFLQAEADCTKAINLDKKN--VKAYLRRGTAR  404 (442)
Q Consensus       330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~  404 (442)
                      ..+++.+...+++++|++.|++++.++|+++.+++++|.++.+   .+++++|+..|++++..+|.+  .++++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4578889999999999999999999999999999999999987   456678999999999998765  46999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      .++|++++|+++|+++++++|++..+...+..+.+.+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.68  E-value=9.1e-16  Score=124.56  Aligned_cols=119  Identities=29%  Similarity=0.410  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l  387 (442)
                      ...+..+.+.|+.+++.|+|.+|+..|++++...+..               ..++.++|.||.+++++++|+.++++++
T Consensus        12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            4567889999999999999999999999999864432               3567789999999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      +++|.+..+++++|.++..+|++++|+.+|+++++++|++..+...+..+...+
T Consensus        92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988887543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.1e-15  Score=133.43  Aligned_cols=117  Identities=19%  Similarity=0.113  Sum_probs=110.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..+..+..++.+|.+|++.|+|++|+..|+++++++|+++.+++++|.+|.++|++++|+..|+++++++|++..+++++
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      |.++..+|++++|++.|+++++.+|++......+...
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            9999999999999999999999999998876655543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.9e-16  Score=118.17  Aligned_cols=116  Identities=34%  Similarity=0.480  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-------HHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------KAY  397 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~  397 (442)
                      .+..+.++|+.++..|+|++|+.+|+++++++|++..++.++|.+|.++|+|++|+.+|+++++++|.+.       .++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999999999999998774       466


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      +.+|.++..++++++|+.+|++++..+++ +.....+..+.+.+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            77888889999999999999999999875 56677777776654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=7.8e-16  Score=125.22  Aligned_cols=118  Identities=25%  Similarity=0.358  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----------------NGNNATYYSNRAAAYLESGSFLQAEADCTKAI  387 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  387 (442)
                      ..+..+...|..++..|+|++|+..|+++++.                +|....++.++|.|+.++|+|++|+..|.+++
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            44556778899999999999999999999864                34556788999999999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      +++|.+..+|+++|.+|..+|++++|+..|+++++++|++..+...+..+.+.+
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998887653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.64  E-value=1.2e-15  Score=114.60  Aligned_cols=95  Identities=14%  Similarity=0.012  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ...+..|..+++.|++++|+..|+++++.+|+++.++..+|.++.+.+++++|+.+|+++++++|++..+|+.+|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 013459          407 LGYYKEAIEDFSYAL  421 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l  421 (442)
                      +|++++|++++++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999976

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=1.1e-14  Score=114.52  Aligned_cols=106  Identities=18%  Similarity=0.106  Sum_probs=96.0

Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----------GSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       335 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +++++|+..|+++++++|++..+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            355678899999999999999999999999999999854          5568999999999999999999999999999


Q ss_pred             HHcCC-----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          405 EMLGY-----------YKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       405 ~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      ..+|+           |++|.++|+++++++|++..++..+..+.+.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            88764           6899999999999999999999999887654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.7e-15  Score=131.20  Aligned_cols=121  Identities=11%  Similarity=-0.015  Sum_probs=112.2

Q ss_pred             cccchHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      +.-+|....+|+.+|.++...+ ++++|+..++++++++|++..+|+.+|.++..+|++++|+..++++++++|.+..+|
T Consensus        70 i~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~  149 (315)
T d2h6fa1          70 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  149 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHH
Confidence            3345899999999999999876 599999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +++|.++..++++++|+++|+++++++|++..++.+++.+..
T Consensus       150 ~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         150 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.1e-14  Score=116.61  Aligned_cols=106  Identities=17%  Similarity=0.133  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----------
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----------  393 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----------  393 (442)
                      .++..++++|.+++..|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+++|++++...+.+          
T Consensus        34 ~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          34 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            3467899999999999999999999999999999999999999999999999999999999999764432          


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          394 ------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       394 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                            .++++++|.++..+|++++|.+.|++++++.|+...
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence                  478999999999999999999999999999887533

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.9e-14  Score=126.53  Aligned_cols=120  Identities=17%  Similarity=0.094  Sum_probs=114.1

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      -+|...+++..++.++.+.+.+++|+++++++|+++|++..+|+++|.++..++ ++++|+.+++++++.+|++..+|++
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            357888999999999999999999999999999999999999999999999987 4999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      +|.++..+|++++|++.++++++++|++..++.+++.+...
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~  158 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  158 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.4e-14  Score=128.86  Aligned_cols=120  Identities=19%  Similarity=0.128  Sum_probs=115.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .|.....+..+|..+...|++++|+..|++++...|.+...+..++.++.+.|++++|+..|+++++++|++..+++++|
T Consensus       267 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  346 (388)
T d1w3ba_         267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA  346 (388)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  441 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  441 (442)
                      .+|.++|++++|+++|+++++++|+++.++..++.+.+.+
T Consensus       347 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999987654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-13  Score=114.47  Aligned_cols=100  Identities=26%  Similarity=0.298  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      +..+++.|..++..|+|++|++.|++   +.+.++.+++++|.+|..+|++++|+.+|+++++++|+++.+|+++|.++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            44566889999999999999999986   456788999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCh
Q 013459          406 MLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       406 ~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                      ++|++++|++.|++++...+.+.
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             hhccHHHHHHHHHHHHHhCccCc
Confidence            99999999999999998876553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=124.86  Aligned_cols=107  Identities=19%  Similarity=0.243  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .+..+..+|..+...|++++|+..|++++..+|++..++..+|.++..+|++++|+..|+++++++|++..+++++|.+|
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKRAS  431 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~  431 (442)
                      .++|++++|++.|+++++++|++....
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            999999999999999999999887654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.43  E-value=1.1e-13  Score=110.46  Aligned_cols=102  Identities=20%  Similarity=0.160  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--  392 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--  392 (442)
                      ..++..|..++..|+|++|+..|++++++.|+.            ..+|.++|.+|.++|++++|+.++++++++.|.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            344455889999999999999999999998764            357889999999999999999999999987542  


Q ss_pred             ---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459          393 ---------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  428 (442)
Q Consensus       393 ---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  428 (442)
                               ...+++++|.+|..+|++++|+.+|++++++.|+..
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                     244789999999999999999999999999976443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-12  Score=115.29  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459          327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  406 (442)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  406 (442)
                      ...+++|..+++.|+|++|+..|+++++.+|++..+|+.+|.++..+|++++|+..|+++++++|++...++.+|.+|..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHH
Q 013459          407 LGYYKEAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       407 ~~~~~~A~~~~~~~l~~~p~~~~~  430 (442)
                      +|++++|++.+++++..+|++...
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~  123 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHL  123 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred             cccccccccchhhHHHhccchHHH
Confidence            999999999999999999986543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.6e-12  Score=116.86  Aligned_cols=117  Identities=22%  Similarity=0.189  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +.....+..+|..+.+.|++++|+..|+++++++|++..++..+|.++...|++++|++.+++++...|.+...++.++.
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  313 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      ++...|++++|++.|+++++++|++..++..++.+..
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  350 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=7.1e-12  Score=108.76  Aligned_cols=109  Identities=17%  Similarity=0.077  Sum_probs=98.4

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--------
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--------  393 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--------  393 (442)
                      +|+.+.+++.+|.++.+.|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++.+|.+        
T Consensus        67 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  146 (259)
T d1xnfa_          67 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  146 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            478889999999999999999999999999999999999999999999999999999999999998764432        


Q ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHcCCHH
Q 013459          394 --------------------------------------------------------------VKAYLRRGTAREMLGYYK  411 (442)
Q Consensus       394 --------------------------------------------------------------~~~~~~~a~~~~~~~~~~  411 (442)
                                                                                    .++++++|.+|..+|+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  226 (259)
T d1xnfa_         147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  226 (259)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHH
Confidence                                                                          234777899999999999


Q ss_pred             HHHHHHHHHHhhCCCChHH
Q 013459          412 EAIEDFSYALVLEPTNKRA  430 (442)
Q Consensus       412 ~A~~~~~~~l~~~p~~~~~  430 (442)
                      +|+++|++++..+|++-..
T Consensus       227 ~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         227 SATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHHHHcCCCCHHH
Confidence            9999999999999987543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=7.5e-12  Score=101.11  Aligned_cols=95  Identities=18%  Similarity=0.141  Sum_probs=88.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  399 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  399 (442)
                      ...|.....+.++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..+...
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHH
Q 013459          400 RGTAREMLGYYKEAI  414 (442)
Q Consensus       400 ~a~~~~~~~~~~~A~  414 (442)
                      ++.+...+..+.++.
T Consensus       151 l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         151 LLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988777666654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.5e-12  Score=91.98  Aligned_cols=78  Identities=14%  Similarity=0.054  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459          363 YSNRAAAYLESGSFLQAEADCTKAINLDKK-------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  435 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~  435 (442)
                      ++.+|.++++.|+|++|+.+|++++++.|.       ...++.++|.++.++|++++|+++++++++++|+++.++.+++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            344444444444444444444444443221       1344555555555555555555555555555555555555555


Q ss_pred             HHHhh
Q 013459          436 RLRKV  440 (442)
Q Consensus       436 ~~~~~  440 (442)
                      .+++.
T Consensus        88 ~~~~~   92 (95)
T d1tjca_          88 YFEYI   92 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.4e-12  Score=92.06  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  397 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  397 (442)
                      .++.++++|..+++.|+|++|+..|++++++.|.+       ..++.++|.++.++|++++|+.+|+++++++|++.+++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35678999999999999999999999999986543       57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc
Q 013459          398 LRRGTAREML  407 (442)
Q Consensus       398 ~~~a~~~~~~  407 (442)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.7e-12  Score=93.86  Aligned_cols=84  Identities=14%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  400 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  400 (442)
                      ..|..+..+..+|.++.+.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..+
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          32 LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44888999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH
Q 013459          401 GTAR  404 (442)
Q Consensus       401 a~~~  404 (442)
                      +.+.
T Consensus       112 ~~l~  115 (117)
T d1elwa_         112 QNME  115 (117)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.4e-11  Score=96.10  Aligned_cols=95  Identities=18%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      +|.....|+.+|.+++..|++++|+..|+++++++|++..++..+|.++..+|++++|+.+|+++++++|++..++..++
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~  119 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  119 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHH--HcCCHHHHHHH
Q 013459          402 TARE--MLGYYKEAIED  416 (442)
Q Consensus       402 ~~~~--~~~~~~~A~~~  416 (442)
                      .+..  ..+.+++|+..
T Consensus       120 ~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         120 ECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            7754  33445555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.25  E-value=6.8e-11  Score=95.15  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  402 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  402 (442)
                      +.....+.++|.++++.++|++|+..++++++++|++..+++++|.++..+|++++|+.+|++++.++|++..++..++.
T Consensus        61 ~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          61 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHH-HHHHHHHHH
Q 013459          403 AREMLGYYKE-AIEDFSYAL  421 (442)
Q Consensus       403 ~~~~~~~~~~-A~~~~~~~l  421 (442)
                      +....+++.+ ..+.|.+.+
T Consensus       141 ~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         141 CQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHH
Confidence            9887776644 334444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.3e-11  Score=95.96  Aligned_cols=90  Identities=21%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....+.++|.++++.|+|++|+..++++|+++|++..+++.+|.+|.++|++++|+.+|+++++++|++..+...++.+.
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHHHH
Q 013459          405 EMLGYYKEAI  414 (442)
Q Consensus       405 ~~~~~~~~A~  414 (442)
                      ..+.++.+..
T Consensus       141 ~~~~~~~~~e  150 (170)
T d1p5qa1         141 QRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777666544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.20  E-value=4.6e-11  Score=94.48  Aligned_cols=84  Identities=19%  Similarity=0.158  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ....+.++|.++++.++|++|+.+++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++.++...+..+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHcC
Q 013459          405 EMLG  408 (442)
Q Consensus       405 ~~~~  408 (442)
                      .+++
T Consensus       146 ~kl~  149 (153)
T d2fbna1         146 NKLK  149 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.20  E-value=8.7e-11  Score=87.43  Aligned_cols=78  Identities=12%  Similarity=0.054  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++.+|.++++.|++++|+..|+++++.+|+++.+|+.+|.++...+++++|+.+|+++++++|++..++..++.+..
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999999999999988764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=4.5e-10  Score=90.80  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHhcCHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQAE  380 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~~~~~~~~~~~~~A~  380 (442)
                      -.....++..|..+...|++++|+..|.+++++.+.+                      ..++..++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            4567889999999999999999999999999986543                      257889999999999999999


Q ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q 013459          381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA-------LVLEPT  426 (442)
Q Consensus       381 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-------l~~~p~  426 (442)
                      .+++++++++|.+..+|..++.+|..+|++.+|++.|+++       +.++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       446665

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.15  E-value=2.4e-10  Score=89.21  Aligned_cols=92  Identities=15%  Similarity=0.065  Sum_probs=79.5

Q ss_pred             chHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----------CHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----------SFLQAE  380 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~~~A~  380 (442)
                      +|.++.+++.+|.++...          +++++|+..|+++++++|++..+++++|.+|..+|           +|++|+
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~  106 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  106 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh
Confidence            389999999999999854          55689999999999999999999999999998876           479999


Q ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013459          381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  413 (442)
Q Consensus       381 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A  413 (442)
                      ++|+++++++|++..++..++.+....+.+.++
T Consensus       107 ~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         107 QFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888886554444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.5e-10  Score=96.01  Aligned_cols=82  Identities=16%  Similarity=0.121  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      +...+...|..+++.|+|++|+..|++++.++|.++.+|+++|.+|.++|++++|+++|+++++++|++..++..++.+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hh
Q 013459          439 KV  440 (442)
Q Consensus       439 ~~  440 (442)
                      ..
T Consensus        83 ~~   84 (201)
T d2c2la1          83 LE   84 (201)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.8e-10  Score=109.57  Aligned_cols=116  Identities=11%  Similarity=-0.028  Sum_probs=84.0

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .+.....+..+|..+.+.+++++|+..+.+++..++  ..++.++|.++..++++++|+.+|+++++++|++..+++++|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             ---------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            367788899999999999999999999999998876  367889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      .++...|++.+|+.+|.+++.++|..+.++.++..+.+
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.5e-10  Score=87.14  Aligned_cols=87  Identities=11%  Similarity=0.016  Sum_probs=76.4

Q ss_pred             cchHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459          321 NQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      ..|..+.+++++|.++++.   +++++|+.+|++++..+|.+  ..+++++|.+|.++|++++|+++|+++++++|++.+
T Consensus        28 ~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          28 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence            3478899999999999874   56778999999999988765  458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q 013459          396 AYLRRGTAREML  407 (442)
Q Consensus       396 ~~~~~a~~~~~~  407 (442)
                      +...++.+..+.
T Consensus       108 A~~l~~~I~~~~  119 (122)
T d1nzna_         108 AKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998888776543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.4e-10  Score=87.22  Aligned_cols=77  Identities=16%  Similarity=0.069  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      ..+.++|..++..|+|++|+.+|+++++++|++..+++++|.+|..+|++++|++.++++++++|++...+..++.+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34668999999999999999999999999999999999999999999999999999999999999988776665544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=4.4e-09  Score=94.47  Aligned_cols=121  Identities=11%  Similarity=0.047  Sum_probs=104.8

Q ss_pred             ccchHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYK----------DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAI  387 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l  387 (442)
                      ..+|+...+|+.++..+..          .+++++|+.+++++++.+|++..+++.+|.++...++  +++|+..+.+++
T Consensus        57 ~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  136 (334)
T d1dcea1          57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHH
Confidence            3457777777666655443          4568999999999999999999999999999888775  899999999999


Q ss_pred             hcCCccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459          388 NLDKKNVKAY-LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  440 (442)
Q Consensus       388 ~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  440 (442)
                      .++|.+..++ +..|.++...+++++|++.++++++++|++..++..++.+...
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             hhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999998886 4678889999999999999999999999999999999888654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=5.9e-09  Score=93.62  Aligned_cols=118  Identities=11%  Similarity=-0.072  Sum_probs=89.9

Q ss_pred             ccchHHHHHHHHHHHHHHhcccHH------------------------------HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013459          320 FNQKQSAEIAKEKGNQAYKDKQWL------------------------------KAISFYTEAIKLNGNNATYYSNRAAA  369 (442)
Q Consensus       320 ~~~~~~~~~~~~~a~~~~~~~~~~------------------------------~A~~~~~~al~~~p~~~~~~~~~~~~  369 (442)
                      ..+|.+..+|+.+|.++...|+++                              ++...|.+++..+|.+...+..++.+
T Consensus       172 ~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~  251 (334)
T d1dcea1         172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEK  251 (334)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            334566666777777766665543                              23333444444455555555556666


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459          370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  437 (442)
Q Consensus       370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  437 (442)
                      +...+++++|+..+.+++..+|.+..+++.+|.++..+|++++|+++|+++++++|++...+..++..
T Consensus       252 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            67777888999999999999999999999999999999999999999999999999999988877554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=2.8e-08  Score=72.79  Aligned_cols=83  Identities=13%  Similarity=-0.033  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459          359 NATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  434 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  434 (442)
                      .....++.|.++.+..   +.++|+..++.+++.+|.+. +++|++|.+|.++|+|++|.++++++++++|+|..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3678888899888764   46789999999999888764 7999999999999999999999999999999999998888


Q ss_pred             HHHHhhh
Q 013459          435 DRLRKVF  441 (442)
Q Consensus       435 ~~~~~~~  441 (442)
                      ..+++.+
T Consensus       114 ~~Ie~~~  120 (124)
T d2pqrb1         114 SMVEDKI  120 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.87  E-value=1.1e-08  Score=87.77  Aligned_cols=96  Identities=19%  Similarity=0.122  Sum_probs=62.4

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH-----------------
Q 013459          334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA-----------------  396 (442)
Q Consensus       334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----------------  396 (442)
                      ..+++.|++++|+..|+++++.+|++..++..++.++...|++++|++.|+++++++|++..+                 
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            445566666666666666666666666666666666666666666666666666665554444                 


Q ss_pred             ------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          397 ------------------YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       397 ------------------~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                                        ++..+.++...|++++|.+.++++.++.|+.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence                              444455566667777777777777777776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=9.1e-09  Score=90.41  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=93.7

Q ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCc-
Q 013459          321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK-  392 (442)
Q Consensus       321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~-  392 (442)
                      +.+..+..+.++|.+|.+.|++++|+..|++++++.+..      ..++..+|.++.. .+++++|+.+|++++++.+. 
T Consensus        72 ~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~  151 (290)
T d1qqea_          72 NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            345677899999999999999999999999999986554      5678888888865 69999999999999987432 


Q ss_pred             -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459          393 -----NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  429 (442)
Q Consensus       393 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  429 (442)
                           ...++.++|.++..+|+|++|++.|++++...+++..
T Consensus       152 ~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence                 2557889999999999999999999999999888764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=3.1e-08  Score=86.92  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  393 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---  393 (442)
                      +.-++.|...|+.|...++|++|++.|.+++++..      +....+.++|.||.++|++++|+..|++++.+.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            44567888999999999999999999999999732      234689999999999999999999999999886544   


Q ss_pred             ---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 013459          394 ---VKAYLRRGTAREM-LGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       394 ---~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~  426 (442)
                         ..++..+|.+|.. .+++++|++.|++++++.+.
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence               5678888988865 69999999999999987543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.4e-07  Score=82.82  Aligned_cols=106  Identities=13%  Similarity=0.030  Sum_probs=91.6

Q ss_pred             cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459          319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  393 (442)
Q Consensus       319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  393 (442)
                      +.+++..++....+|..++..|++++|+.+|+++++..|++.     .++..+|.++..+|++++|+..|++++++.+..
T Consensus         5 ~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_           5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            344456677788889999999999999999999999998863     578889999999999999999999999875432


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          394 ------VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       394 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                            ...+..++.++...+++..|...+.+++.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  4577889999999999999999999998764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=3.9e-07  Score=66.58  Aligned_cols=79  Identities=8%  Similarity=-0.000  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       326 ~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      .+..|+.|.++.++   .+.++++.+++++++.+|.+. +.++.+|..|+++|+|++|.++++++++++|+|..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            57788889999876   466899999999999998764 79999999999999999999999999999999999876655


Q ss_pred             HHH
Q 013459          402 TAR  404 (442)
Q Consensus       402 ~~~  404 (442)
                      .+-
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1e-06  Score=77.61  Aligned_cols=112  Identities=9%  Similarity=-0.154  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      ...|...+....+.+++++|...|+++++..|.+...+...+..... .++.+.|...|+++++.+|++...|..++..+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            44688889999999999999999999999999999999888876554 58899999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHH
Q 013459          405 EMLGYYKEAIEDFSYALVLEPTNKR----ASLSADRL  437 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~  437 (442)
                      ...|++++|...|+++++..|.++.    .+......
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f  250 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999999998876543    45444433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=7.1e-07  Score=78.66  Aligned_cols=116  Identities=10%  Similarity=-0.010  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      |.....|...+......|++++|...|+++++..|.+. .+|..++....+.++++.|...|+++++..|.+...+...+
T Consensus        96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a  175 (308)
T d2onda1          96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            55667889999999999999999999999999999775 47889999999999999999999999999999999999888


Q ss_pred             HHHH-HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          402 TARE-MLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       402 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .... ..++.+.|.+.|+++++.+|++...+..+..+.
T Consensus       176 ~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            8754 468999999999999999999999888777654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.3e-07  Score=86.61  Aligned_cols=83  Identities=19%  Similarity=0.067  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  405 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  405 (442)
                      ...+..+|..+...++|++|+.+|+++++++|++..+|+++|.++...|++.+|+.+|.|++..+|..+.++.+++.++.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HcC
Q 013459          406 MLG  408 (442)
Q Consensus       406 ~~~  408 (442)
                      +..
T Consensus       232 ~~~  234 (497)
T d1ya0a1         232 KAL  234 (497)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.43  E-value=4.7e-07  Score=71.02  Aligned_cols=72  Identities=13%  Similarity=-0.004  Sum_probs=62.3

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-----------NATYYSNRAAAYLESGSFLQAEADCTKAINLD  390 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  390 (442)
                      .+..+..+.++|.++.+.|+|++|+..+++++++.+.           ...+++++|.+|..+|++++|+.+|++++++.
T Consensus        51 ~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          51 AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456778999999999999999999999999987542           23478999999999999999999999999987


Q ss_pred             Ccc
Q 013459          391 KKN  393 (442)
Q Consensus       391 p~~  393 (442)
                      |..
T Consensus       131 ~~~  133 (156)
T d2hr2a1         131 EER  133 (156)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.4e-06  Score=77.48  Aligned_cols=104  Identities=16%  Similarity=-0.028  Sum_probs=90.7

Q ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CC
Q 013459          322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DK  391 (442)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p  391 (442)
                      .+.....+...+..+...+++++|...+++++...+.+    ...+.++|.++...|++++|+..+++++..      .|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  288 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS  288 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh
Confidence            35566778889999999999999999999999887654    356778999999999999999999999843      45


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459          392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  425 (442)
Q Consensus       392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  425 (442)
                      ....++..+|.+|..+|++++|.+.+++++++.+
T Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            6678999999999999999999999999998754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.28  E-value=1.2e-06  Score=74.90  Aligned_cols=71  Identities=18%  Similarity=0.074  Sum_probs=65.7

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459          368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       368 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      .-.++.|++++|+..|+++++.+|.+..++..++.+|...|++++|++.|+++++++|++..+...++.+.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999888777654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.18  E-value=2e-05  Score=67.25  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459          326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRG  401 (442)
Q Consensus       326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  401 (442)
                      +.+++.+|..+++.++|++|+++|+++.+.  .+..+++.+|.+|..    ..++..|..+++++...  .++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence            568999999999999999999999999876  588999999999988    67999999999998874  4678888898


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCC
Q 013459          402 TAREM----LGYYKEAIEDFSYALVLEPTN  427 (442)
Q Consensus       402 ~~~~~----~~~~~~A~~~~~~~l~~~p~~  427 (442)
                      .++..    ..+.+.|...++++.+..+..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            88765    457889999999998775543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=4.7e-06  Score=66.58  Aligned_cols=65  Identities=9%  Similarity=-0.033  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  388 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  388 (442)
                      ....++..++..+...|+|++|+.+++++++++|.+..+|..++.++.+.|++.+|+..|+++.+
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999843

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=0.00017  Score=54.10  Aligned_cols=92  Identities=17%  Similarity=0.125  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .+.++.  ....++++|+..|+++.+.  .++.+++.+|.+|..    ..++++|+++|+++.+.  .++.+.+.+|.+|
T Consensus        28 ~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y  101 (133)
T d1klxa_          28 CLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ  101 (133)
T ss_dssp             HHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             hhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHH
Confidence            444443  3456899999999999875  588999999999986    56799999999999885  4688999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHhhCCC
Q 013459          405 EM----LGYYKEAIEDFSYALVLEPT  426 (442)
Q Consensus       405 ~~----~~~~~~A~~~~~~~l~~~p~  426 (442)
                      ..    ..++++|.++|+++.++...
T Consensus       102 ~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         102 YAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            87    46899999999999887543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=9e-05  Score=62.97  Aligned_cols=110  Identities=24%  Similarity=0.210  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHH
Q 013459          324 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK  395 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~  395 (442)
                      .....++.+|..+..    ..+...+...++++.+.  .+..+++++|.+|..    ..++++|+.+|+++.+.  .++.
T Consensus       140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~  215 (265)
T d1ouva_         140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGG  215 (265)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             cccchhhhhhhhhccCCCcccccccchhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHH
Confidence            345567788888876    55778888888888764  588999999999987    67999999999999987  4688


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459          396 AYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  439 (442)
Q Consensus       396 ~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  439 (442)
                      +++++|.+|.+    ..++++|.++|+++.....  ..+...+.+++.
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~--~~A~~~l~~l~~  261 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA--KGACDILKQLKI  261 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC--HHHHHHHHTCCC
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence            99999999986    4479999999999988864  456666665543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.62  E-value=0.00034  Score=52.32  Aligned_cols=92  Identities=20%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----cCCHHHHH
Q 013459          339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAI  414 (442)
Q Consensus       339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~  414 (442)
                      ..|+++|+.+|+++.+..  +..+++.++.  ....++++|+++|+++.+.  .++.+.+.+|.+|..    ..++++|.
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            358999999999999875  5566677764  3467899999999999885  578999999999986    45799999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHH
Q 013459          415 EDFSYALVLEPTNKRASLSADRLR  438 (442)
Q Consensus       415 ~~~~~~l~~~p~~~~~~~~l~~~~  438 (442)
                      ++|+++.+.  .++.+...++.+.
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y  101 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQ  101 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHH
Confidence            999999876  4677777777654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.20  E-value=2.4  Score=37.65  Aligned_cols=97  Identities=11%  Similarity=-0.038  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459          325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  404 (442)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  404 (442)
                      .......++..++..+..+.+...+........+ ......+.......+++..+...+...-..........|.+|.++
T Consensus       251 ~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~  329 (450)
T d1qsaa1         251 IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL  329 (450)
T ss_dssp             HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHH
Confidence            3344445555666677788888888777655444 343333444466788999999888776443344577889999999


Q ss_pred             HHcCCHHHHHHHHHHHHh
Q 013459          405 EMLGYYKEAIEDFSYALV  422 (442)
Q Consensus       405 ~~~~~~~~A~~~~~~~l~  422 (442)
                      ..+|+.++|...|+.+..
T Consensus       330 ~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         330 LERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHcCChhhHHHHHHHHhc
Confidence            999999999999999875

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.90  E-value=0.68  Score=29.51  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459          324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK  354 (442)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  354 (442)
                      +.+..+-..|..+.+.|+|+|||++.+++..
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455667788999999999999988777654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=83.35  E-value=5  Score=28.16  Aligned_cols=61  Identities=13%  Similarity=0.030  Sum_probs=48.1

Q ss_pred             HHHH-HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459          364 SNRA-AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  424 (442)
Q Consensus       364 ~~~~-~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  424 (442)
                      ..++ .+..++|+-++-.+.+...++...-+++.+..+|.+|.+.|...+|-..+.+|-+..
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            3444 445677788888888888888777789999999999999999999999999887654

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.17  E-value=1.7  Score=39.36  Aligned_cols=53  Identities=23%  Similarity=0.192  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH
Q 013459          360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE  412 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~  412 (442)
                      .+....++.-.+..|+|.-|......++..+|+|.++...++.+|.++|...+
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            45556667777777888888888888888888888887778888777775443