Citrus Sinensis ID: 013515
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 441 | 2.2.26 [Sep-21-2011] | |||||||
| Q96P11 | 429 | Putative methyltransferas | yes | no | 0.752 | 0.773 | 0.404 | 1e-62 | |
| Q8K4F6 | 465 | Putative methyltransferas | yes | no | 0.791 | 0.750 | 0.389 | 1e-57 | |
| O14039 | 460 | Putative methyltransferas | yes | no | 0.746 | 0.715 | 0.391 | 2e-50 | |
| P53972 | 490 | Uncharacterized protein Y | yes | no | 0.818 | 0.736 | 0.283 | 1e-35 | |
| Q63ZY6 | 315 | Putative methyltransferas | no | no | 0.430 | 0.603 | 0.404 | 1e-33 | |
| P94464 | 447 | Ribosomal RNA small subun | yes | no | 0.489 | 0.483 | 0.306 | 6e-20 | |
| Q3KNT7 | 163 | Putative NOL1/NOP2/Sun do | no | no | 0.226 | 0.613 | 0.444 | 2e-18 | |
| Q6D4C8 | 484 | Ribosomal RNA small subun | yes | no | 0.512 | 0.466 | 0.327 | 6e-18 | |
| A4SMI9 | 476 | Ribosomal RNA small subun | yes | no | 0.496 | 0.460 | 0.332 | 9e-17 | |
| A1SWV0 | 481 | Ribosomal RNA small subun | yes | no | 0.569 | 0.521 | 0.297 | 2e-16 |
| >sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 209/366 (57%), Gaps = 34/366 (9%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK LVYS + +N K YALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
L G+ G K L+ H+ ++ LA+L V V EDL+ + P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV 138
Query: 173 RVNTLKMDVDSAVLEL---------------------GKQFVVQKDDLVPDLLILPPGCD 211
RVNTLK D V GK F++ D L+P+LL+ P D
Sbjct: 139 RVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTD 196
Query: 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
LH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI A
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFA 256
Query: 272 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 331
+L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG +
Sbjct: 257 FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR 316
Query: 332 RLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENED 391
+L+ T P RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q ENED
Sbjct: 317 QLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENED 368
Query: 392 VIKSVL 397
V++ L
Sbjct: 369 VVRDAL 374
|
May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 215/380 (56%), Gaps = 31/380 (8%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GS+K LVYS + +N K YALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSLKGLVYSSNFQNLKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPD--VPKPRYV 172
L G+ G K L+ H+ ++ LA+L V V EDL+ P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFV 138
Query: 173 RVNTLKMDVDSAVLELGKQ-FVVQ-KDDLVPDL-----------------LILPPGCDLH 213
RVNTLK + A+ +Q F Q + + DL L+ P DLH
Sbjct: 139 RVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLH 198
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
HPL G + LQ KAS + A L+P PG V+DAC+APGNKT ++AAL+K +GKI A +
Sbjct: 199 EHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFD 258
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 333
+ +R+ + + +G + E+ DFL + P D YS+V+ ILLDPSCSGSG + +L
Sbjct: 259 QDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQL 318
Query: 334 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 393
+ H G P++ ERL L+ FQ++AL HAL FP ++R+VYSTCS+ Q ENEDV+
Sbjct: 319 E----EHGEG---TPSK-ERLQALAGFQQRALCHALRFPSLQRLVYSTCSLCQEENEDVV 370
Query: 394 KSVLPIAMSFGFQLATPFPN 413
+ L S F+LA P
Sbjct: 371 QEALQ-HNSGTFRLAPVLPT 389
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 202/360 (56%), Gaps = 31/360 (8%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK L ++ + K TYALVC+TLK+ ++ +++ + +L + K +E L +L +D+
Sbjct: 19 GSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELLVLEKKLKENLARVLVHDL 78
Query: 116 LF---GQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV 172
L G IS G ++ ++ HK + +L V+ VKS E+L + P V PR++
Sbjct: 79 LMSKRGLSIS-NGPIKECILRHKTRLNAEFVKLKVKKGVKSHEELA--LKNP-VSLPRWL 134
Query: 173 RVNTLK-----------MDVDSAVLELG-KQFVVQKDDLVPDLLILPPGCDLHVHPLIVN 220
R+NT+K +D S++ ELG +F + DD V +L+ + P + + L
Sbjct: 135 RINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYI--DDCVENLIAIDPSFPIVENSLYKE 192
Query: 221 GCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 278
G V +Q KAS AA LA G ++D C+APGNKT HLAA K I A E + +R
Sbjct: 193 GKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKR 251
Query: 279 VRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP 338
V+ L+ + +SGA N+ + H DF DPK Y V ILLDPSCSGSG + R D+LL
Sbjct: 252 VQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGIVS-RQDYLL- 309
Query: 339 SHASGHTADPTE-MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
G+ D TE ERL L +FQ L+HAL FP V YSTCS+H++ENE V+ VL
Sbjct: 310 ----GNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENEQVVCEVL 365
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 204/416 (49%), Gaps = 55/416 (13%)
Query: 36 REAAKVLRLVLRGDARRRAVGSIKSLVYSPSVK-----NKKATYALVCQTLKHLSIIKQV 90
R+A VL + + A+ R GS+++LV + N K YA++ K+ +++V
Sbjct: 5 RDATWVLEDIEKEAAKERISGSMQTLVLKSCKRYKLKSNPKHIYAVLDSCWKYKPYLEKV 64
Query: 91 LDSASILNSKWKRQEELVY-------ILTYDILFGQEISLVGD--AEKFLMLHKGAIQLA 141
+ A IL K++ + ++ + +L Q+ +G + +++ K +
Sbjct: 65 MKKAHILEDIPKKKGKPLFSRLTLLLLCHDLLLSKQKRIQMGKHPIKDYVLKFKSPLHSE 124
Query: 142 LAQLLVRNKVKSIEDL-MALYQTPDVPKPRYVRVNTLKM----DVDSAVLELGKQFVVQ- 195
+ +L ++ KV+ + +L ++ + D+P R++R+N LK + + + EL K+F ++
Sbjct: 125 MVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHPNGETEPVLAELRKKFTLKV 184
Query: 196 ------------KDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 243
D+ +P+L + P + H L +G + +Q +AS A L P P
Sbjct: 185 DKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSD 244
Query: 244 KVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEV 296
V+D+CSAPGNKT H A+ + +I A E + ER + L+ IK++G + NI V
Sbjct: 245 IVIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISV 304
Query: 297 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL---------------DHLLPSHA 341
GDF L + Y +V ++DPSCSGSG + ++P
Sbjct: 305 NVGDFTKLATPE-KYKDVTCFIVDPSCSGSGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQ 363
Query: 342 SGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
A RL KLS+FQ + ++HA+SFP +++VYSTCSIH ENE V+ +L
Sbjct: 364 EEFIAKEELQTRLAKLSSFQFQMVKHAMSFPAAKKIVYSTCSIHAEENERVVIDLL 419
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5P2 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHL 259
+P+LL+ P DLH HPL G + LQ +AS + A L P+ KT HL
Sbjct: 1 MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHL 60
Query: 260 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319
AAL+K +GKI A +L+ R+ + + +G + E+ DFL + P DP Y EV +LL
Sbjct: 61 AALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLL 120
Query: 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 379
DPSCSGSG + +L+ T P RL+ L+ FQ++AL HAL+FP ++R+VY
Sbjct: 121 DPSCSGSGMPSRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVY 172
Query: 380 STCSIHQVENEDVIKSVL 397
S CS+ Q ENED+++ L
Sbjct: 173 SMCSLCQEENEDMVQDAL 190
|
May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 22/238 (9%)
Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
+P + +RVN +K D + ++ + + V+K DL D + L G H NG V
Sbjct: 176 IPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH-FFQNGEVS 234
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q ++S +VA AL PK VLDAC+APG K+ H+A LMK KG + + +L+K +V+ +K+
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAY--SEVRAILLDPSCSGSGTAAERLDHLLPSHAS 342
G + ++H + ++ + + IL+D CSG G + D
Sbjct: 295 AADRLG---LTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPD-------M 344
Query: 343 GHTADPTEMERLNKLSAFQKKALRHALSFPGVER---VVYSTCSIHQVENEDVIKSVL 397
+T P + RL ++ Q LR P V++ +VYSTC++ + EN++VI + +
Sbjct: 345 KYTKKPDDSARLAEI---QLSILREIA--PLVKKGGTLVYSTCTMDRTENDEVIHAFI 397
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q3KNT7|NSN5B_HUMAN Putative NOL1/NOP2/Sun domain family member 5B OS=Homo sapiens GN=NSUN5P1 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 290 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPT 349
G + E+ DFL + P DP Y EV +LLDPSCSGSG + +L+ T P
Sbjct: 9 GVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLED-----PGAGTPSPV 63
Query: 350 EMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENED++ L
Sbjct: 64 ---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDAL 108
|
Homo sapiens (taxid: 9606) |
| >sp|Q6D4C8|RSMF_ERWCT Ribosomal RNA small subunit methyltransferase F OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 128/272 (47%), Gaps = 46/272 (16%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 212
S+ED +A Q P R +RVNTLK+ VD A L+L + + Q + + P C
Sbjct: 26 SMEDFIAACQRP---LRRSIRVNTLKISVD-AFLQLAQPYGWQLEPI--------PWCQE 73
Query: 213 HVHPLI--------------VNGCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNK 255
L ++G ++Q +S + A+AL PG +LD +APG+K
Sbjct: 74 GFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPASALFHHNDAPG-TILDVAAAPGSK 132
Query: 256 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315
T +AA + +G IVA E + RV+ L I G +N + H D P Y +
Sbjct: 133 TTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFD-- 190
Query: 316 AILLDPSCSGSGTAAERLDHLLPSHASGHT-ADPTEMERLNKLSAFQKKALRHALSFPGV 374
AILLD CSG G R D SH S + D +R LSAF HAL GV
Sbjct: 191 AILLDAPCSGEGVV--RKDPAAMSHWSQESITDIAATQRDLILSAF------HALKPGGV 242
Query: 375 ERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
++YSTC++++ EN+ V +++ P A F
Sbjct: 243 --MIYSTCTLNRQENQQVCRWLQAQFPDACEF 272
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas salmonicida (strain A449) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 55/274 (20%)
Query: 167 PKPRYVRVNTLKMDVDSAVLE---LGKQF-----------VVQKDDLVPDLLILPPGCDL 212
P R +RVNTLK+ V V++ LG QF + + D+ VP L
Sbjct: 35 PLRRSIRVNTLKISVSDFVMQMQPLGWQFDAVPWCETGFWLTRADESVP----------L 84
Query: 213 HVHPLIVNGCVFLQGKASSM--VAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKG 267
++G ++Q +ASSM V A A K +LDA +APG+KT +AALM +G
Sbjct: 85 GNTAEHLSGLFYIQ-EASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQG 143
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 327
+VA E + R++ L I+ G N+ + H D P AILLD CSG G
Sbjct: 144 MLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLP--ETFDAILLDAPCSGEG 201
Query: 328 TAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSI 384
T + D L +E +++++A Q+ L HAL GV +VYSTC++
Sbjct: 202 TVRKDEDAL----------RNWSIESIDEIAAVQQGLLESAFHALKPGGV--LVYSTCTL 249
Query: 385 HQVENEDVIKSVLPIAMSFG-----FQLATPFPN 413
Q EN+ V +S+L FG LA FPN
Sbjct: 250 SQQENQAVCQSLLE---KFGDALTLDSLADLFPN 280
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Aeromonas salmonicida (strain A449) (taxid: 382245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|A1SWV0|RSMF_PSYIN Ribosomal RNA small subunit methyltransferase F OS=Psychromonas ingrahamii (strain 37) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 140/313 (44%), Gaps = 62/313 (19%)
Query: 149 NKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPP 208
N++K IED +A+ Q P R +RVNTLK+ V+ + +Q V L P
Sbjct: 21 NQLK-IEDFIAVCQRP---LRRAIRVNTLKISVEKFQIRAQEQGWV---------LTAIP 67
Query: 209 GC------DLHVHPL-------IVNGCVFLQGKASSMVAAAL----APKPGWKVLDACSA 251
C +L P + G ++Q +S + AAL P VLDA +A
Sbjct: 68 WCAEGFWIELQEEPTPLGNSAEHLGGLCYIQEASSMLPVAALFHFFTPTTQSIVLDAAAA 127
Query: 252 PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311
PG+KT +AA M G I+ E + R++ L I+ G N+ + H D P
Sbjct: 128 PGSKTTQIAAKMNNSGLIIGNEFSSSRIKMLHANIQRCGIKNVALTHFDARVFGKWLPGT 187
Query: 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD---PTEMERLNKLSAFQKKALRHA 368
+ AILLD CSG GT R D ++ S + + T+ E + LSAF HA
Sbjct: 188 FD--AILLDAPCSGEGTV--RKDKYAMNNWSQSSINEIASTQQELI--LSAF------HA 235
Query: 369 LSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIY 428
L G+ ++YSTC++ EN+D+ F L FP E +FL +++
Sbjct: 236 LKEDGI--LIYSTCTLSHEENQDIC-----------FFLKDKFP----EHIEFLDLETLF 278
Query: 429 FEPIQWKTKKAFL 441
+ + +T + FL
Sbjct: 279 TDAKKTRTAEGFL 291
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Psychromonas ingrahamii (strain 37) (taxid: 357804) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 441 | ||||||
| 343887284 | 534 | NOL1/NOP2/sun family protein [Citrus uns | 0.936 | 0.773 | 0.917 | 0.0 | |
| 359476259 | 508 | PREDICTED: putative methyltransferase NS | 0.929 | 0.807 | 0.788 | 0.0 | |
| 296081680 | 626 | unnamed protein product [Vitis vinifera] | 0.929 | 0.654 | 0.788 | 0.0 | |
| 224092121 | 433 | predicted protein [Populus trichocarpa] | 0.873 | 0.889 | 0.751 | 1e-170 | |
| 255550109 | 497 | williams-beuren syndrome critical region | 0.900 | 0.798 | 0.712 | 1e-167 | |
| 449447153 | 509 | PREDICTED: putative methyltransferase NS | 0.931 | 0.807 | 0.677 | 1e-165 | |
| 356507034 | 494 | PREDICTED: putative methyltransferase NS | 0.877 | 0.783 | 0.733 | 1e-164 | |
| 356514695 | 502 | PREDICTED: putative methyltransferase NS | 0.882 | 0.774 | 0.714 | 1e-159 | |
| 297808641 | 514 | predicted protein [Arabidopsis lyrata su | 0.931 | 0.799 | 0.664 | 1e-158 | |
| 357465793 | 509 | NOL1/NOP2/Sun domain family member 5B [M | 0.922 | 0.799 | 0.691 | 1e-157 |
| >gi|343887284|dbj|BAK61830.1| NOL1/NOP2/sun family protein [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/448 (91%), Positives = 412/448 (91%), Gaps = 35/448 (7%)
Query: 1 MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS
Sbjct: 1 MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
Query: 61 LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE
Sbjct: 61 LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD
Sbjct: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK
Sbjct: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-------- 292
PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA
Sbjct: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAKFKVLLFV 300
Query: 293 ---------------------------NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 325
+IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG
Sbjct: 301 MMHYLYSMIHAFQLLSILFRNSLNQPEDIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 360
Query: 326 SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH 385
SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH
Sbjct: 361 SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH 420
Query: 386 QVENEDVIKSVLPIAMSFGFQLATPFPN 413
QVENEDVIKSVLPIAMSFGFQLATPFP
Sbjct: 421 QVENEDVIKSVLPIAMSFGFQLATPFPQ 448
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476259|ref|XP_002279425.2| PREDICTED: putative methyltransferase NSUN5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/412 (78%), Positives = 366/412 (88%), Gaps = 2/412 (0%)
Query: 1 MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
M +KTAAT + + AK + RLS A+RS+YFARREAAKVL+ VL+GDA+RRAVGSIKS
Sbjct: 1 MVSSKTAAT--TASRAKKPKEQRLSKADRSSYFARREAAKVLQCVLQGDAKRRAVGSIKS 58
Query: 61 LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
LVYSPSV+NKKAT+ALVCQTLKHLSIIK VLDSA ILN+KWKRQE L+YI+TYDILFGQE
Sbjct: 59 LVYSPSVRNKKATFALVCQTLKHLSIIKDVLDSARILNAKWKRQEGLMYIITYDILFGQE 118
Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
IS VGDAEKFL+L K AIQLALA+LLVR KVK +EDLMALYQ PDV KPR+VRVNTLK+D
Sbjct: 119 ISSVGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNTLKLD 178
Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
V+SA ELGKQ +VQKDD+VPDLLILPPG DLH HPL+ NG VF+QGKASSMVA AL P+
Sbjct: 179 VESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPE 238
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
PGW+VLDACSAPGNKTVHLAALM GKGKI+ACEL+ ERV+RL+DT++LSGAANIEVLHGD
Sbjct: 239 PGWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGD 298
Query: 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF 360
FLNL+P DP+YS+VRAILLDPSCSGSGT AERLDHLLPS+A+G D ERLNKL+AF
Sbjct: 299 FLNLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAF 358
Query: 361 QKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
QKKAL HALSFP VE+VVYSTCSIHQ+ENEDVIKSVLP+A S GFQLATPFP
Sbjct: 359 QKKALEHALSFPAVEKVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFP 410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081680|emb|CBI20685.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/412 (78%), Positives = 366/412 (88%), Gaps = 2/412 (0%)
Query: 1 MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
M +KTAAT + + AK + RLS A+RS+YFARREAAKVL+ VL+GDA+RRAVGSIKS
Sbjct: 1 MVSSKTAAT--TASRAKKPKEQRLSKADRSSYFARREAAKVLQCVLQGDAKRRAVGSIKS 58
Query: 61 LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
LVYSPSV+NKKAT+ALVCQTLKHLSIIK VLDSA ILN+KWKRQE L+YI+TYDILFGQE
Sbjct: 59 LVYSPSVRNKKATFALVCQTLKHLSIIKDVLDSARILNAKWKRQEGLMYIITYDILFGQE 118
Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
IS VGDAEKFL+L K AIQLALA+LLVR KVK +EDLMALYQ PDV KPR+VRVNTLK+D
Sbjct: 119 ISSVGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNTLKLD 178
Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
V+SA ELGKQ +VQKDD+VPDLLILPPG DLH HPL+ NG VF+QGKASSMVA AL P+
Sbjct: 179 VESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPE 238
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
PGW+VLDACSAPGNKTVHLAALM GKGKI+ACEL+ ERV+RL+DT++LSGAANIEVLHGD
Sbjct: 239 PGWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGD 298
Query: 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF 360
FLNL+P DP+YS+VRAILLDPSCSGSGT AERLDHLLPS+A+G D ERLNKL+AF
Sbjct: 299 FLNLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAF 358
Query: 361 QKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
QKKAL HALSFP VE+VVYSTCSIHQ+ENEDVIKSVLP+A S GFQLATPFP
Sbjct: 359 QKKALEHALSFPAVEKVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFP 410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224092121|ref|XP_002309481.1| predicted protein [Populus trichocarpa] gi|222855457|gb|EEE93004.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/391 (75%), Positives = 342/391 (87%), Gaps = 6/391 (1%)
Query: 23 RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLK 82
RL+NAERSAYFARREAAKVL VL+GDA+R+AV SIKSLVYSPS++NKKAT+ALVCQTLK
Sbjct: 13 RLNNAERSAYFARREAAKVLHTVLQGDAKRQAVASIKSLVYSPSIRNKKATFALVCQTLK 72
Query: 83 HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVG-DAEKFLMLHKGAIQLA 141
HL IIK VL+ A+ILNSKWKRQEEL+YI+ YD+LFG+ ISLVG DAEKFL K A+Q A
Sbjct: 73 HLRIIKDVLEIANILNSKWKRQEELIYIIAYDVLFGKGISLVGGDAEKFLACRKDAMQSA 132
Query: 142 LAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP 201
LA+L+VR K K+I+D +ALYQ PD+ KP YVRVNTLK+DVDSA+ ELGKQF VQKDD++P
Sbjct: 133 LAKLVVRKKAKNIDDFIALYQPPDITKPCYVRVNTLKLDVDSALHELGKQFKVQKDDMIP 192
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
LL+LPP DLH H L++NG +F+QGKASSMVAA L PKPGW+VLDACSAPGNKTVHLAA
Sbjct: 193 HLLVLPPHTDLHNHSLVLNGSIFVQGKASSMVAAVLDPKPGWEVLDACSAPGNKTVHLAA 252
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
LMKGKGKI+ACELNK+R +RL+DTI+LSGAANIEVLHGDFLN+DPK P +S+V AILLDP
Sbjct: 253 LMKGKGKIIACELNKDRAKRLEDTIRLSGAANIEVLHGDFLNIDPKGP-FSKVSAILLDP 311
Query: 322 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYST 381
SCSGSGTAA+RLDHLLPS T D + ERLNKL+AFQKKAL HALSF V+R+VYST
Sbjct: 312 SCSGSGTAAQRLDHLLPS----RTTDVVDTERLNKLAAFQKKALAHALSFTAVKRIVYST 367
Query: 382 CSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
CSI+Q+ENEDV+ S+LP+A S GFQLATPFP
Sbjct: 368 CSINQIENEDVVNSILPLATSNGFQLATPFP 398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550109|ref|XP_002516105.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] gi|223544591|gb|EEF46107.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/403 (71%), Positives = 344/403 (85%), Gaps = 6/403 (1%)
Query: 11 PSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNK 70
PSGA+ K S +L+ ERS ++ARREAA VL+ VL+G A+RRA GSIKSLVYSPSV+NK
Sbjct: 13 PSGAAGK-SETRQLTRPERSGFYARREAANVLKRVLQGHAQRRATGSIKSLVYSPSVRNK 71
Query: 71 KATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLV-GDAEK 129
+AT+ALVCQTLKHL +IK VL+SA LN+ K++EEL+YI+ YDILFGQEI LV GD EK
Sbjct: 72 RATFALVCQTLKHLPVIKDVLESAGALNTHSKKKEELMYIVAYDILFGQEIPLVVGDVEK 131
Query: 130 FLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG 189
FL+ K +Q ALA++LVR K K+I+DL+ALY+ PDV KP YVRVNTLK DVDSA+LELG
Sbjct: 132 FLLRRKNDLQRALAKVLVRKKAKTIDDLLALYRPPDVSKPCYVRVNTLKSDVDSALLELG 191
Query: 190 KQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 249
+QF VQKDD+VP+L +LPP DLH HPL+++G +F+QGKASSMVA AL PKPGW+VLDAC
Sbjct: 192 RQFTVQKDDMVPNLFVLPPNSDLHNHPLVLDGSIFVQGKASSMVAVALDPKPGWEVLDAC 251
Query: 250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309
SAPGNKTVH+AALM+GKG+I+ACELNK+R++RL+DT++LSGAANIEV H DFLNL+P+D
Sbjct: 252 SAPGNKTVHVAALMRGKGRIIACELNKDRIKRLEDTVRLSGAANIEVRHCDFLNLNPRDS 311
Query: 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 369
+S++RAILLDPSCSGSGTAA+RLDHLLPSHA+ DP MERL KL+AFQKKAL HAL
Sbjct: 312 PFSKIRAILLDPSCSGSGTAAQRLDHLLPSHAT----DPNNMERLKKLAAFQKKALAHAL 367
Query: 370 SFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
SFP VERVVYSTCSI+Q ENEDVI S+LPIA S GFQL TPFP
Sbjct: 368 SFPAVERVVYSTCSINQTENEDVIISILPIAASHGFQLVTPFP 410
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447153|ref|XP_004141333.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus] gi|449529369|ref|XP_004171672.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 280/413 (67%), Positives = 343/413 (83%), Gaps = 2/413 (0%)
Query: 1 MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
M R A + +A S R+SNA+RSAYFARREAAKVLR VL GDA+RRA+ SIK+
Sbjct: 1 MGRVNNRTKASASGAAGKSEMRRMSNADRSAYFARREAAKVLRRVLEGDAQRRAIASIKT 60
Query: 61 LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
LVY+PSV+NKK T+ALVC+TLK+L +IK V+++A +L++KWKRQ+EL+Y++ YDIL GQ+
Sbjct: 61 LVYAPSVRNKKGTFALVCKTLKYLPVIKDVVEAADLLSNKWKRQKELIYVIMYDILLGQK 120
Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQT-PDVPKPRYVRVNTLKM 179
L GDAEKFLM + A+Q A+ QLL + K +IEDL+A P V +PR+VRVNTLKM
Sbjct: 121 THLAGDAEKFLMRQQSALQSAVTQLLSKKKANNIEDLIARGDDGPGVSRPRFVRVNTLKM 180
Query: 180 DVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAP 239
DV +A+ ELGK++ VQKDD+V DLLILPPG DLH HPL+ +G +FLQGKASSMVA AL P
Sbjct: 181 DVHTAIEELGKRYAVQKDDMVSDLLILPPGSDLHDHPLVADGSIFLQGKASSMVAVALDP 240
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
KPGW+VLDACSAPGNKTVHLA+LM GKG+++ACELN+ RV+RL+ TIKLSGA+NI+VLHG
Sbjct: 241 KPGWEVLDACSAPGNKTVHLASLMHGKGRVIACELNENRVKRLRHTIKLSGASNIDVLHG 300
Query: 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 359
DFLNL+PKDP+ S+VRAILLDPSCSGSGTAA RLDHLLPSHA G T ++ERLNKL+A
Sbjct: 301 DFLNLNPKDPSLSKVRAILLDPSCSGSGTAAVRLDHLLPSHAEG-TISGDDLERLNKLAA 359
Query: 360 FQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
FQ+KAL HA SFP VE++VYSTCSIHQ+ENEDV++SVLP+A S GFQL TPFP
Sbjct: 360 FQRKALAHAFSFPAVEKIVYSTCSIHQIENEDVVQSVLPLAESRGFQLDTPFP 412
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507034|ref|XP_003522276.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/390 (73%), Positives = 343/390 (87%), Gaps = 3/390 (0%)
Query: 23 RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLK 82
+ AERSAYFARREAAKVL+++L GDA+RRA+ SIKSL+Y PSV+NKKAT+AL+CQTLK
Sbjct: 16 KFKGAERSAYFARREAAKVLKVILEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLK 75
Query: 83 HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLAL 142
HL IIK VL++ASILN+KWKRQ EL+YI+ YDIL GQ +SLVGDAEK+LM H+ A++ L
Sbjct: 76 HLPIIKDVLEAASILNTKWKRQRELIYIIVYDILLGQAVSLVGDAEKYLMRHQDALRSTL 135
Query: 143 AQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD 202
QLL++ VK+++ L+AL+Q PD+ PRYVRVNTLK+DVDSA+LEL K++ VQKD+L+PD
Sbjct: 136 KQLLLQRNVKTVKQLIALHQVPDISVPRYVRVNTLKLDVDSALLELQKKYSVQKDNLLPD 195
Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
LLILPPG DLH HPL+ NG +FLQGKASSM A AL+P+PGW+VLDAC+APGNKTVHLAAL
Sbjct: 196 LLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAAL 255
Query: 263 MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322
MK KGKI+ACEL KER++RLKDTIKLSGA+NI+VL+ DFLNL+PKDP+YS+V+AILLDPS
Sbjct: 256 MKRKGKIIACELQKERIKRLKDTIKLSGASNIQVLNDDFLNLNPKDPSYSKVKAILLDPS 315
Query: 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 382
CSGSGTAA RLDHLLPS A+G AD MERLNKL+ FQ+KAL+HAL FP VER+VYSTC
Sbjct: 316 CSGSGTAASRLDHLLPSKAAGQDAD---MERLNKLATFQRKALQHALLFPAVERIVYSTC 372
Query: 383 SIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
SI+Q+ENEDVIKSVLPIA S GFQLA PFP
Sbjct: 373 SINQIENEDVIKSVLPIAESNGFQLAKPFP 402
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514695|ref|XP_003526039.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/399 (71%), Positives = 341/399 (85%), Gaps = 10/399 (2%)
Query: 23 RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLK 82
+L A+RSAYFARREAAKVL++VL GDA+RRA+ SIKSL+Y PSV+NKKAT+AL+CQTLK
Sbjct: 13 KLKGADRSAYFARREAAKVLKVVLEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLK 72
Query: 83 HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLAL 142
HL II VL++ASILNSKWKRQ EL+YI+ YDILFGQ + LVGDAEKFLM H+ A++ L
Sbjct: 73 HLPIINYVLEAASILNSKWKRQRELIYIIVYDILFGQAVPLVGDAEKFLMRHQDALRSTL 132
Query: 143 AQLLVRNKVKSIEDLMALYQTP---------DVPKPRYVRVNTLKMDVDSAVLELGKQFV 193
QLL++ VK+++ L+AL+Q P DV PRYVRVNTLK+DVDSA+LEL K +
Sbjct: 133 KQLLLQRNVKTVKQLIALHQVPGHCSNSSCADVSVPRYVRVNTLKLDVDSALLELQKNYS 192
Query: 194 VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPG 253
VQKD L+PDLLILPPG DLH HPL+ NG +FLQGKASSM A AL+P+PGW+VLDAC+APG
Sbjct: 193 VQKDHLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPG 252
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
NKTVHLAALMK KGKI+ACEL +ER++RLKDTIKLSGA+NI+VL+ DFLN +PKDP+YS+
Sbjct: 253 NKTVHLAALMKRKGKIIACELQRERIKRLKDTIKLSGASNIQVLNDDFLNQNPKDPSYSK 312
Query: 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373
V+AILLDPSCSGSGTAA RLDHLLPS A+ ++ D T+ ERLNKL+ FQ+KAL+HAL FP
Sbjct: 313 VKAILLDPSCSGSGTAASRLDHLLPSKAAANSQD-TDTERLNKLATFQRKALQHALLFPA 371
Query: 374 VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
VER+VYSTCSI+Q+ENEDVIKSVLPIA S GFQLA PFP
Sbjct: 372 VERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFP 410
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808641|ref|XP_002872204.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318041|gb|EFH48463.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 281/423 (66%), Positives = 337/423 (79%), Gaps = 12/423 (2%)
Query: 1 MARTKTAATAP-----SGASAKTSRN-----GRLSNAERSAYFARREAAKVLRLVLRGDA 50
MAR T P SGA + + S AERSA +ARREAA VLR +LRGDA
Sbjct: 1 MARRHKPKTPPAKQRFSGAESHKPKTPPATKQSFSAAERSALYARREAANVLRSILRGDA 60
Query: 51 RRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYI 110
RRAV SIKSLV+SPSV+NK+AT+ALVC+TLKHL++IK VL+ A++LNSKWKRQE LVYI
Sbjct: 61 ERRAVASIKSLVFSPSVRNKRATFALVCETLKHLTVIKDVLEIANVLNSKWKRQEPLVYI 120
Query: 111 LTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPR 170
+ YDILFG++ +GDAEKFLM HK A+ LA LLVR KV+S++ L+ L + KPR
Sbjct: 121 ICYDILFGKDTPSIGDAEKFLMRHKDALLSGLATLLVRKKVESVDQLLGLSKLNGHLKPR 180
Query: 171 YVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS 230
YVRVNTLKMDVDSAV EL K + VQ+D+ VPDLL+LPPG DLH H L+ NG +FLQGKAS
Sbjct: 181 YVRVNTLKMDVDSAVQELEKHYTVQRDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKAS 240
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
SMVAAAL P+ GW+VLDACSAPGNKT+HLAALM+G+GKI+ACELN+ERV+RL+ TIKLSG
Sbjct: 241 SMVAAALQPEAGWEVLDACSAPGNKTIHLAALMQGQGKIIACELNEERVKRLEHTIKLSG 300
Query: 291 AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 350
A+NI+V HGDFL L+PKDP++ +VRAILLDPSCSGSGT +RLDHLLPSH++ + +
Sbjct: 301 ASNIQVFHGDFLGLNPKDPSFVKVRAILLDPSCSGSGTITDRLDHLLPSHSADNMN--YD 358
Query: 351 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATP 410
RL+KL+ FQKKAL HALSFP VERVVYSTCSIHQ+ENEDV+ SVL +A S GF+LATP
Sbjct: 359 SMRLHKLAVFQKKALAHALSFPQVERVVYSTCSIHQIENEDVVSSVLALASSLGFKLATP 418
Query: 411 FPN 413
FP
Sbjct: 419 FPQ 421
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465793|ref|XP_003603181.1| NOL1/NOP2/Sun domain family member 5B [Medicago truncatula] gi|355492229|gb|AES73432.1| NOL1/NOP2/Sun domain family member 5B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 285/412 (69%), Positives = 344/412 (83%), Gaps = 5/412 (1%)
Query: 1 MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
M + K A AK+S+ L AERSAYFARREAAKVL+ VL GDA+RRA+ SIK+
Sbjct: 6 MRKKKKGDDACKENEAKSSK--VLKGAERSAYFARREAAKVLKTVLEGDAKRRALASIKT 63
Query: 61 LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
LVY PSV+NKKAT+AL+CQTLKHL I VL +A ILN+KWKRQ+EL+YI+ YDILFGQE
Sbjct: 64 LVYHPSVRNKKATFALICQTLKHLPFINDVLQAAKILNTKWKRQQELIYIIVYDILFGQE 123
Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
+ LVGDAEK+LM HK A+ L L ++L++ VK++++L AL++ PDV PR VRVNTLK+D
Sbjct: 124 VPLVGDAEKYLMRHKEALHLHLKKILLQKNVKTVKELFALHEVPDVSVPRNVRVNTLKLD 183
Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
VDSA++EL K++ VQKDDL+ DLLILPPG DLH HPL+ NG +FLQGKASSMVA AL+P+
Sbjct: 184 VDSALVELRKKYSVQKDDLLHDLLILPPGTDLHDHPLVKNGSIFLQGKASSMVAPALSPE 243
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
PGW+VLDAC+APGNKTVHLAALMK KG+I+ACEL KER++RL DTIKLSGA NI+VL+ D
Sbjct: 244 PGWEVLDACAAPGNKTVHLAALMKRKGRIIACELKKERIKRLNDTIKLSGATNIQVLNED 303
Query: 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF 360
FLN++ KDPAYS+V+AILLDPSCSGSGTAA RLDHLLPS A+G D MERLNKL+AF
Sbjct: 304 FLNINSKDPAYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQNVD---MERLNKLAAF 360
Query: 361 QKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
Q+KAL+HA FP +ERVVYSTCSI+Q+ENEDV+KSVLPIA S+GFQL PFP
Sbjct: 361 QRKALQHAFLFPALERVVYSTCSINQIENEDVVKSVLPIAESYGFQLVKPFP 412
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 441 | ||||||
| TAIR|locus:2179749 | 567 | AT5G26180 "AT5G26180" [Arabido | 0.879 | 0.684 | 0.674 | 2e-136 | |
| ZFIN|ZDB-GENE-040426-2476 | 483 | nsun5 "NOP2/Sun domain family, | 0.433 | 0.395 | 0.448 | 1.1e-60 | |
| UNIPROTKB|Q96P11 | 429 | NSUN5 "Putative methyltransfer | 0.437 | 0.449 | 0.470 | 2.9e-60 | |
| MGI|MGI:2140844 | 465 | Nsun5 "NOL1/NOP2/Sun domain fa | 0.437 | 0.415 | 0.460 | 2.6e-59 | |
| DICTYBASE|DDB_G0267872 | 680 | DDB_G0267872 "NOL1/NOP2/Sun fa | 0.297 | 0.192 | 0.484 | 6.3e-51 | |
| POMBASE|SPAC2C4.06c | 460 | SPAC2C4.06c "tRNA (cytosine-5- | 0.750 | 0.719 | 0.379 | 9.5e-50 | |
| CGD|CAL0003354 | 498 | orf19.2604 [Candida albicans ( | 0.412 | 0.365 | 0.398 | 2.5e-36 | |
| UNIPROTKB|Q5A962 | 498 | CaO19.10135 "Putative uncharac | 0.412 | 0.365 | 0.398 | 2.5e-36 | |
| UNIPROTKB|G4MPG8 | 557 | MGG_05721 "Uncharacterized pro | 0.269 | 0.213 | 0.4 | 3.8e-33 | |
| UNIPROTKB|Q63ZY6 | 315 | NSUN5P2 "Putative methyltransf | 0.437 | 0.612 | 0.405 | 1.4e-30 |
| TAIR|locus:2179749 AT5G26180 "AT5G26180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
Identities = 263/390 (67%), Positives = 316/390 (81%)
Query: 23 RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLK 82
+ S+ ERSA +ARREAA +LR VLRGDA RRAV SIKSLV SPSV+NK+ T+ALVC+TLK
Sbjct: 87 KFSSLERSALYARREAANILRTVLRGDAERRAVASIKSLVLSPSVRNKRGTFALVCETLK 146
Query: 83 HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLAL 142
+L++IK VLD A++LNSKWKRQE LV+I+ YDILFG++ +GDAEKFLM HK A+ L
Sbjct: 147 YLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGDAEKFLMRHKEALLSGL 206
Query: 143 AQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKXXXXXX 202
A LLVR KV S++ L+ T + KPRYVRVNTLKMDVDSAV EL K + VQK
Sbjct: 207 ATLLVRKKVDSVDQLLGSKLTGHL-KPRYVRVNTLKMDVDSAVQELEKHYTVQKDETVPD 265
Query: 203 XXXXXXGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
G DLH H L+ NG +FLQGKASSMVAAAL P+ GW+VLDACSAPGNKT+HLAAL
Sbjct: 266 LLVLPPGSDLHAHRLVANGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAAL 325
Query: 263 MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322
M+G+GKI+ACELN+ERV+RL+ TIKLSGA+NIEV HGDFL L+PKDP+++++RAILLDPS
Sbjct: 326 MEGQGKIIACELNEERVKRLEHTIKLSGASNIEVCHGDFLGLNPKDPSFAKIRAILLDPS 385
Query: 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 382
CSGSGT +RLDHLLPSH+ + + M RL+KL+ FQKKAL HALSFP VERVVYSTC
Sbjct: 386 CSGSGTITDRLDHLLPSHSEDNNMNYDSM-RLHKLAVFQKKALAHALSFPKVERVVYSTC 444
Query: 383 SIHQVENEDVIKSVLPIAMSFGFQLATPFP 412
SI+Q+ENEDV+ SVLP+A S GF+LATPFP
Sbjct: 445 SIYQIENEDVVSSVLPLASSLGFKLATPFP 474
|
|
| ZFIN|ZDB-GENE-040426-2476 nsun5 "NOP2/Sun domain family, member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 91/203 (44%), Positives = 121/203 (59%)
Query: 211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
D H H L G + LQ KAS + A L P G V+DAC+APGNKT HLAA+MK KGK+
Sbjct: 194 DFHDHFLYKAGHIILQDKASCLPAFLLNPPVGSHVIDACAAPGNKTSHLAAIMKNKGKLF 253
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
A +L+ +R+ + + +G ++ + DFL +DP++ Y EV+ ILLDPSCSGSG
Sbjct: 254 AFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKVDPQNSEYKEVKYILLDPSCSGSGMVC 313
Query: 331 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390
LD L + G RL L+AFQ L HAL FP +ER+VYSTCSIH ENE
Sbjct: 314 -LLDELPETQEDG---------RLQALAAFQLHCLNHALQFPQLERIVYSTCSIHSQENE 363
Query: 391 DVIKSVLPIAMSFGFQLATPFPN 413
+V+ + L + GF+L P+
Sbjct: 364 EVVTACLQ--QNPGFRLVHLLPD 384
|
|
| UNIPROTKB|Q96P11 NSUN5 "Putative methyltransferase NSUN5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 95/202 (47%), Positives = 128/202 (63%)
Query: 211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 196 DLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIF 255
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG +
Sbjct: 256 AFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPS 315
Query: 331 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390
+L+ P +G T P RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q ENE
Sbjct: 316 RQLEE--PG--AG-TPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENE 367
Query: 391 DVIKSVLPIAMSFGFQLATPFP 412
DV++ L F+LA P
Sbjct: 368 DVVRDALQQNPG-AFRLAPALP 388
|
|
| MGI|MGI:2140844 Nsun5 "NOL1/NOP2/Sun domain family, member 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 93/202 (46%), Positives = 129/202 (63%)
Query: 211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
DLH HPL G + LQ KAS + A L+P PG V+DAC+APGNKT ++AAL+K +GKI
Sbjct: 196 DLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIF 255
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
A + + +R+ + + +G + E+ DFL + P D YS+V+ ILLDPSCSGSG +
Sbjct: 256 AFDQDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLS 315
Query: 331 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390
+L+ H G P++ ERL L+ FQ++AL HAL FP ++R+VYSTCS+ Q ENE
Sbjct: 316 RQLEE----HGEG---TPSK-ERLQALAGFQQRALCHALRFPSLQRLVYSTCSLCQEENE 367
Query: 391 DVIKSVLPIAMSFGFQLATPFP 412
DV++ L S F+LA P
Sbjct: 368 DVVQEALQ-HNSGTFRLAPVLP 388
|
|
| DICTYBASE|DDB_G0267872 DDB_G0267872 "NOL1/NOP2/Sun family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 6.3e-51, Sum P(3) = 6.3e-51
Identities = 64/132 (48%), Positives = 82/132 (62%)
Query: 211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
DLH H +++NG + LQ KAS + + L+P PG +D+CSAPGNKT L+A MK GKI
Sbjct: 226 DLHDHKMLLNGQIILQDKASCLPSFILSPPPGSVCIDSCSAPGNKTSLLSAQMKNTGKIF 285
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
A E + +R L K S NIE ++ FLNL DP + +V IL DPSCSGSG
Sbjct: 286 AIEKDTKRCGTLIKLTKRSLCKNIETINDSFLNLKHDDPKFKDVEYILCDPSCSGSGIV- 344
Query: 331 ERLDHLLPSHAS 342
RLD+LLP+ S
Sbjct: 345 NRLDYLLPTKYS 356
|
|
| POMBASE|SPAC2C4.06c SPAC2C4.06c "tRNA (cytosine-5-)-methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 136/358 (37%), Positives = 195/358 (54%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK L ++ + K TYALVC+TLK+ ++ +++ + +L + K +E L +L +D+
Sbjct: 19 GSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELLVLEKKLKENLARVLVHDL 78
Query: 116 LFGQE-ISLV-GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVR 173
L + +S+ G ++ ++ HK + +L V+ VKS E+L AL + P V PR++R
Sbjct: 79 LMSKRGLSISNGPIKECILRHKTRLNAEFVKLKVKKGVKSHEEL-AL-KNP-VSLPRWLR 135
Query: 174 VNTLKMDVDSAVLELGKQFVVQKXXXXXXXXXXXXGCDLHV------HPLIVN-----GC 222
+NT+K D + LG V C ++ P++ N G
Sbjct: 136 INTIKSTKDEVLQGLGLD-KVSSIEELGPDKFYIDDCVENLIAIDPSFPIVENSLYKEGK 194
Query: 223 VFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
V +Q KAS AA LA G ++D C+APGNKT HLAA K I A E + +RV+
Sbjct: 195 VIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKRVQ 253
Query: 281 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 340
L+ + +SGA N+ + H DF DPK Y V ILLDPSCSGSG + R D+LL
Sbjct: 254 TLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGIVS-RQDYLL--- 309
Query: 341 ASGHTADPTE-MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
G+ D TE ERL L +FQ L+HAL FP V YSTCS+H++ENE V+ VL
Sbjct: 310 --GNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENEQVVCEVL 365
|
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| CGD|CAL0003354 orf19.2604 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 79/198 (39%), Positives = 110/198 (55%)
Query: 221 GCVFLQGKASSMVAAALAPKPG---WKVLDACSAPGNKTVHLAALMKGKGKIV-ACELNK 276
G + +Q +AS + L P +V+DAC+APGNKT H AA + +V A E +
Sbjct: 244 GEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVYAFERDS 303
Query: 277 ERVRRLKDTI-KLSGAAN---IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 332
+RV+ LK K +G I+V H DF P+D + +V +++DPSCSGSG
Sbjct: 304 KRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPED--FPDVTGLVIDPSCSGSGIFGRA 361
Query: 333 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 392
L+ SH + + ERLNKL+ FQ ++HALSFP +VVYSTCSIH ENE V
Sbjct: 362 LED---SH-NEEEIENVNTERLNKLAGFQFAIMKHALSFPSARKVVYSTCSIHAQENERV 417
Query: 393 IKSVL--PIAMSFGFQLA 408
+ +L P G++LA
Sbjct: 418 VVDLLSDPEVNRRGWKLA 435
|
|
| UNIPROTKB|Q5A962 CaO19.10135 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 79/198 (39%), Positives = 110/198 (55%)
Query: 221 GCVFLQGKASSMVAAALAPKPG---WKVLDACSAPGNKTVHLAALMKGKGKIV-ACELNK 276
G + +Q +AS + L P +V+DAC+APGNKT H AA + +V A E +
Sbjct: 244 GEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVYAFERDS 303
Query: 277 ERVRRLKDTI-KLSGAAN---IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 332
+RV+ LK K +G I+V H DF P+D + +V +++DPSCSGSG
Sbjct: 304 KRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPED--FPDVTGLVIDPSCSGSGIFGRA 361
Query: 333 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 392
L+ SH + + ERLNKL+ FQ ++HALSFP +VVYSTCSIH ENE V
Sbjct: 362 LED---SH-NEEEIENVNTERLNKLAGFQFAIMKHALSFPSARKVVYSTCSIHAQENERV 417
Query: 393 IKSVL--PIAMSFGFQLA 408
+ +L P G++LA
Sbjct: 418 VVDLLSDPEVNRRGWKLA 435
|
|
| UNIPROTKB|G4MPG8 MGG_05721 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 3.8e-33, Sum P(3) = 3.8e-33
Identities = 54/135 (40%), Positives = 74/135 (54%)
Query: 209 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKP-GWKVLDACSAPGNKTVHLAALMK--- 264
G D+ +G V LQ KAS A L P+P V+DAC+APGNKT H AA+++
Sbjct: 200 GSDITKTEAYKSGAVILQDKASCFPAYLLDPRPEDGDVIDACAAPGNKTTHAAAVLEEYR 259
Query: 265 -------GKGK---IVACELNKERVRRLKDTIKLSGAANIEVLH-G-DFLNLDPKDPAYS 312
KG + A E + R L +K++G+ + V++ G DF+ DP P Y
Sbjct: 260 TAVNVKESKGSRSTVHAFEKDSRRAEILAKMVKIAGSDSFTVVNKGKDFMKADPNSPLYK 319
Query: 313 EVRAILLDPSCSGSG 327
+V A+LLDPSCSGSG
Sbjct: 320 DVAALLLDPSCSGSG 334
|
|
| UNIPROTKB|Q63ZY6 NSUN5P2 "Putative methyltransferase NSUN5C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 82/202 (40%), Positives = 115/202 (56%)
Query: 211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
DLH HPL G + LQ +AS + A L P+ KT HLAAL+K +GKI
Sbjct: 12 DLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLKNQGKIF 71
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
A +L+ R+ + + +G + E+ DFL + P DP Y EV +LLDPSCSGSG +
Sbjct: 72 AFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPS 131
Query: 331 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390
+L+ P +G T P RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENE
Sbjct: 132 RQLEE--PG--AG-TPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENE 183
Query: 391 DVIKSVLPIAMSFGFQLATPFP 412
D+++ L F+LA P
Sbjct: 184 DMVQDALQQNPG-AFRLAPALP 204
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00032231001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (508 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00033408001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa) | • | • | • | • | 0.499 | ||||
 | GSVIVG00019376001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa) | • | • | 0.482 | ||||||
 | GSVIVG00001542001 | SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (207 aa) | • | • | 0.478 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 441 | |||
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 3e-57 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 6e-38 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 6e-29 | |
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 9e-28 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 9e-27 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 4e-26 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; | 7e-25 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 8e-21 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 5e-19 | |
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; | 6e-14 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-07 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-06 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 4e-06 | |
| smart00650 | 169 | smart00650, rADc, Ribosomal RNA adenine dimethylas | 2e-05 | |
| pfam00398 | 254 | pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla | 3e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-05 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 6e-05 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 1e-04 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-04 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 7e-04 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 8e-04 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 8e-04 | |
| TIGR00479 | 431 | TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf | 0.003 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 3e-57
Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 21/276 (7%)
Query: 126 DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAV 185
F H + L L ++ A+ P PR +RVNTLK DV+ +
Sbjct: 46 LRPAFRYSHPEWLVEKLPDALG------EDEAEAIAAALLRPPPRSLRVNTLKADVEELL 99
Query: 186 LELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
L + + +K ++ ++L + + P G +++Q +AS + A L PKPG +
Sbjct: 100 EALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER 159
Query: 245 VLDACSAPGNKTVHLAALMKGKGKIV-ACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
VLD C+APG KT HLA LM+ +G IV A +++ +R++RL++ +K G N+ V++ D
Sbjct: 160 VLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR 219
Query: 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 363
L P + ILLD CSG+G D P E + +L+ QK+
Sbjct: 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKW-------RRTP---EDIAELAKLQKE 269
Query: 364 ALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
L AL PG +VYSTCS+ ENE+V++ L
Sbjct: 270 ILAAALKLLKPG-GVLVYSTCSLTPEENEEVVERFL 304
|
Length = 355 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 6e-38
Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
P +RVNTLK+ V+ + +L ++ + V++ L P+ L++ G ++ L +G +
Sbjct: 175 EPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKG-NIAGTDLFKDGLIT 233
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q ++S +VA AL PK G VLDAC+APG KT H+A L+K GK+VA ++++ +++ +++
Sbjct: 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE 293
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 344
K G NIE D + K + IL+D CSG G + D +
Sbjct: 294 NAKRLGLTNIETKALDARKVHEKFAEKFDK--ILVDAPCSGLGVIRRKPD-------IKY 344
Query: 345 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
++E L ++ Q + L + G +VYSTC+I + ENE+VI++ L
Sbjct: 345 NKTKEDIESLQEI---QLEILESVAQYLKKG-GILVYSTCTIEKEENEEVIEAFL 395
|
Length = 444 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-29
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
Q +++ +VA L P+PG +LDAC+APG KT H+A LM +G+I A + + R+++L++
Sbjct: 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN 296
Query: 286 IKLSGAANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLD---HLLPSHA 341
+ G +I++L D NL P + ILLD CSG GT D P
Sbjct: 297 AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTP--- 353
Query: 342 SGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVLPI 399
E++ +L+ Q + L PG +VY+TC++H ENE I+ L
Sbjct: 354 ----------EKIQELAPLQAELLESLAPLLKPG-GTLVYATCTLHPAENEAQIEQFL-- 400
Query: 400 AMSFGFQLATPFPN 413
A ++L P
Sbjct: 401 ARHPDWKLEPPKQK 414
|
Length = 434 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 9e-28
Identities = 79/235 (33%), Positives = 109/235 (46%), Gaps = 29/235 (12%)
Query: 172 VRVNTLKMDVDSAVLELGKQFVVQKDDLVP-----DLLILPPGCDLHVHPLIVNGCVFLQ 226
+RVNTLK++V+ + L + VV + G P + G + Q
Sbjct: 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFEVKESPFSIGST----PEYLFGYYYPQ 56
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
+S + AL P+ +VLD +APG KT ++ LMK KG IVA E++K R + L I
Sbjct: 57 EASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNI 116
Query: 287 KLSGAANIEVLHGDFLNLDPKDPAY-SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHT 345
G N V++ D K AY + AILLD CSG G R D PS +
Sbjct: 117 NRMGVLNTIVINAD----GRKFGAYLLKFDAILLDAPCSGEGVI--RKD---PSRKRNWS 167
Query: 346 ADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
E + S QK+ + AL GV +VYSTCS+ ENE+VI +L
Sbjct: 168 -----EEDIKYCSLLQKELIDAAIDALKPGGV--LVYSTCSLEVEENEEVIDYIL 215
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 9e-27
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 225
P ++R+N K D + L + + DL PD + L +H P G V +
Sbjct: 163 RPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTV 222
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
Q ++ VA LAP+ +LDAC+APG KT H+ L + ++VA ++++ R++R+ +
Sbjct: 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYEN 281
Query: 286 IK-LSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 344
+K L E GD + ILLD CS +G D
Sbjct: 282 LKRLGLTIKAETKDGDGRGPSQWAEN-EQFDRILLDAPCSATGVIRRHPD-------IKW 333
Query: 345 TADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG 404
P ++ L +L + A+ L G +VY+TCS+ EN + IK+ L F
Sbjct: 334 LRKPRDIAELAELQSEILDAIWPLLKTGGT--LVYATCSVLPEENSEQIKAFLQEHPDFP 391
Query: 405 FQLATPFPNGTAEASQFL 422
F+ Q L
Sbjct: 392 FEKTGTPEQVRDGGLQIL 409
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-26
Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHVHPLIVNGCV 223
P +R N LK S + L V + L + + P NG V
Sbjct: 7 CSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPFENGAV 66
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
+Q +S + A AL P+ +LD C+APG KT H+A LMK +G +VA + NK+R++R+
Sbjct: 67 TVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVY 126
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 343
I+ G NI V GD +D K E ILLD CSG+G D
Sbjct: 127 ANIQRLGVFNIIVQEGDARQIDQK-LLGGEFDRILLDAPCSGTGVIRRDPD-------IK 178
Query: 344 HTADPTEMERLNKLSAFQKKALR--HALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
++ +L +L QK+ L+ L PG +VYSTCS+ ENE VIK L
Sbjct: 179 WLRREADIAQLAEL---QKELLKAAWDLVKPG-GVLVYSTCSVLPEENEAVIKYFL 230
|
Length = 277 |
| >gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-25
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 173 RVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLH-VHPLIVNGCVFLQGKASS 231
R+N LK + + V + +P+ + D P + G V +Q +
Sbjct: 184 RINRLKTTPEKFLAAPADASVTFEKSGLPNFFL---SKDFSLFEPFLKLGLVSVQNPTQA 240
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL--NK-ERVRRLKDTIKL 288
+ L P+PG VLD C+APG K+ +A LM+ +G+I A + K E++R +
Sbjct: 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-- 298
Query: 289 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD- 347
G IE + GD + P++ AILLD C+G+G R A+
Sbjct: 299 -GITIIETIEGDARSFSPEEQP----DAILLDAPCTGTGVLGRR-------------AEL 340
Query: 348 --PTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
E+L +L Q + L HA S PG +VY+TCSI ENE I++ L
Sbjct: 341 RWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATCSIEPEENELQIEAFL 393
|
Length = 445 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 8e-21
Identities = 94/289 (32%), Positives = 128/289 (44%), Gaps = 61/289 (21%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ--------------FVVQKDD 198
S++D +A Q P R +RVNTLK+ V L+L F +++DD
Sbjct: 21 SMDDFIAACQRP---LRRSIRVNTLKISVA-DFLQLMAPYGWTLTPIPWCEEGFWIERDD 76
Query: 199 LVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSM--VAAALAPKPGWK-VLDACSAPGN 254
LP G H+ +G ++Q +ASSM VAA A + VLD +APG+
Sbjct: 77 EDA----LPLGNTAEHL-----SGLFYIQ-EASSMLPVAALFADDNAPQRVLDMAAAPGS 126
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKD 308
KT +AALM +G IVA E + RV+ L I G +N+ + H G L
Sbjct: 127 KTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL------ 180
Query: 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS-GHTADPTEMERLNKLSAFQKKALRH 367
AILLD CSG GT R D + S + +R SAF H
Sbjct: 181 --PETFDAILLDAPCSGEGTV--RKDPDALKNWSPESNLEIAATQRELIESAF------H 230
Query: 368 ALSFPGVERVVYSTCSIHQVENEDVI---KSVLPIAMSFGFQLATPFPN 413
AL G +VYSTC++++ EN+ V K P A+ F L FP
Sbjct: 231 ALKPGGT--LVYSTCTLNREENQAVCLWLKETYPDAVEF-EPLGDLFPG 276
|
Length = 470 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 5e-19
Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 37/242 (15%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP------DLLILPPGCDLHVHPLIVN 220
P P +RVN+L + + + L ++ + VP L++ G +++ +I +
Sbjct: 161 PLPTMLRVNSLAITREEVIKILAEE----GTEAVPGKHSPFSLIVRKLGVNMNDSRVIKD 216
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
G +QG++S +V + +PG +VLD C+APG KT +A LMK +GKI+A ++++E+++
Sbjct: 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ 276
Query: 281 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 340
++ K ++IE+ D L + IL+D C+ GTA
Sbjct: 277 LVEKHAKRLKLSSIEIKIADAERL--TEYVQDTFDRILVDAPCTSLGTARN--------- 325
Query: 341 ASGHTADPTEMERLNK-----LSAFQKKALRHA---LSFPGVERVVYSTCSIHQVENEDV 392
P + R+NK LS Q + + A L G+ ++YSTC++ + EN +V
Sbjct: 326 ------HPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI--LLYSTCTVTKEENTEV 377
Query: 393 IK 394
+K
Sbjct: 378 VK 379
|
Length = 431 |
| >gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 6e-14
Identities = 70/257 (27%), Positives = 103/257 (40%), Gaps = 75/257 (29%)
Query: 173 RVNTLKMDVDS--AVL-ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 229
RVN D+ A+L E G + + PD + L +H P G V +Q A
Sbjct: 175 RVNRRHHSRDAYLALLAEAGIE--AFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAA 232
Query: 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-L 288
+ + A LAP+ G +VLDAC+APG KT H+ L ++VA +++ +R+ R+++ ++ L
Sbjct: 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQA-QVVALDIDAQRLERVRENLQRL 291
Query: 289 SGAANIEVLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGTA------------- 329
A V+ GD + P D ILLD CS +G
Sbjct: 292 GLKA--TVIVGDARDPAQWWDGQPFD-------RILLDAPCSATGVIRRHPDIKWLRRPE 342
Query: 330 ---------AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 380
+E LD L P G T ++Y+
Sbjct: 343 DIAALAALQSEILDALWPLLKPGGT-------------------------------LLYA 371
Query: 381 TCSIHQVENEDVIKSVL 397
TCSI ENE IK+ L
Sbjct: 372 TCSILPEENEQQIKAFL 388
|
Length = 427 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-07
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
+VLD G + LA+ ++ +++ + + A N+EVL GD
Sbjct: 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERL 333
L P+ I+ DP R
Sbjct: 59 LPPEADE--SFDVIISDPPLHHLVEDLARF 86
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
PG +VLD G+ + LA L G ++ +L+ E + ++ KL+ I + GD
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 301 FLNLDPKDPAY 311
+ +
Sbjct: 60 APDALDLLEGF 70
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
+ + L KPG KVLD G+ + LA G G++V ++++ + ++ +K G
Sbjct: 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKGV 100
Query: 292 ANIEVLHGDFLNL 304
N+E + GD NL
Sbjct: 101 QNVEFVVGDAENL 113
|
Length = 238 |
| >gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ A +PG VL+ G T L K ++ A E++ RL++ K + A
Sbjct: 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAK---RVTAIEIDPRLAPRLRE--KFAAAD 59
Query: 293 NIEVLHGDFLNLD-PKDPAY 311
N+ V+HGD L D PK Y
Sbjct: 60 NLTVIHGDALKFDLPKLQPY 79
|
Length = 169 |
| >gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ + VL+ G T LA K ++VA E++ +RL++ KL+
Sbjct: 21 IVDKANLQESDTVLEIGPGKGALTTELAKRAK---QVVAIEIDPRLAKRLQE--KLALHP 75
Query: 293 NIEVLHGDFLNLD-PKD 308
N+EV+H DFL PKD
Sbjct: 76 NVEVVHQDFLKFSFPKD 92
|
Length = 254 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 300
G +VLD + G + A ++V EL+ E + + L+G A + V+ GD
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGP-DARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 301 FLNLDPKDPAYSEVRAILLDP 321
L +L +P
Sbjct: 60 ARELLELPDG--SFDLVLGNP 78
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
+ L +PG + D + G+ T+ A L+ G++ A E N E + ++ ++ G +NI
Sbjct: 13 SKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVSNI 71
Query: 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 340
++ GD + A+ + GSG + + +
Sbjct: 72 VIVEGDAPEAPEDLL--PDPDAVFV----GGSGGLLQEILEAVERR 111
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 229 ASSMVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
A M A L KPG +VL+ S G T A ++ G +V+ E E V +
Sbjct: 58 APHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRN 117
Query: 286 IKLSGAANIEVLHGD 300
++ G N+ V+ GD
Sbjct: 118 LEKLGLENVIVVVGD 132
|
Length = 210 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298
K G KVLD G T LA + ++V ++++E + + K+ K G N+E +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 299 GDFLNLD 305
GD L
Sbjct: 61 GDIEELP 67
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 217 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELN 275
+I + C F G + ++AA ++LD + GN + L A K KIV E+
Sbjct: 20 IIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGA--GNGALGLLLAQRTEKAKIVGVEIQ 77
Query: 276 KERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
+E + + L+ I+V+ D K ++ I+ +P
Sbjct: 78 EEAAEMAQRNVALNPLEERIQVIEADIKEF-LKALVFASFDLIICNP 123
|
Length = 248 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 297
K G K LD G+ T L+ GK+V ++N+ ++ + K G NIE L
Sbjct: 44 GVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL 103
Query: 298 HGDFLNLDPKDPAY 311
G+ L +D ++
Sbjct: 104 QGNAEELPFEDDSF 117
|
Length = 233 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
+ L P+PG ++ D + G+ T+ A G+++A E ++E + ++ G N+
Sbjct: 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNL 86
Query: 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 343
EV+ GD P AI + G G E L+ G
Sbjct: 87 EVVEGDAPEALPD---LPSPDAIFI----GGGGNIEEILEAAWERLKPG 128
|
Length = 187 |
| >gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
V+DA G T+ LA K +V E+ E V + + +L+G AN+E L G
Sbjct: 295 LVVDAYCGVGTFTLPLA---KQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET 351
Query: 304 LDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHL 336
+ PK P A +LLDP G AAE L +
Sbjct: 352 VLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTI 383
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 441 | |||
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 100.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 100.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 100.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 100.0 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 100.0 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 100.0 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 100.0 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 100.0 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.66 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.62 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.59 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.57 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.55 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.52 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.51 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.49 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.47 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.46 | |
| cd00620 | 126 | Methyltransferase_Sun N-terminal RNA binding domai | 99.45 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.45 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.44 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.44 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.44 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.43 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.43 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.43 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.41 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.41 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.4 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.39 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.38 | |
| PRK00202 | 137 | nusB transcription antitermination protein NusB; R | 99.38 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.38 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.38 | |
| PF01029 | 134 | NusB: NusB family; InterPro: IPR006027 This domain | 99.37 | |
| TIGR01951 | 129 | nusB transcription antitermination factor NusB. A | 99.37 | |
| cd00619 | 130 | Terminator_NusB Transcription termination factor N | 99.36 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.36 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.35 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.35 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.34 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.34 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.34 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.33 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.32 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.31 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.31 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.3 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.29 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.29 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.27 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.27 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.26 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.26 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.26 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.26 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.25 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.24 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.24 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.24 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.23 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.22 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.22 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.21 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.21 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.2 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.19 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.18 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.18 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.18 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.17 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.17 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.16 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.16 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.15 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.14 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.13 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.13 | |
| cd00447 | 129 | NusB_Sun RNA binding domain of NusB (N protein-Uti | 99.12 | |
| PLN02476 | 278 | O-methyltransferase | 99.12 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.09 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.08 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.06 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.04 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.04 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.04 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.04 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.02 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 99.01 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 99.0 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.0 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.99 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.99 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.95 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.94 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.94 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.93 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.93 | |
| PRK09634 | 207 | nusB transcription antitermination protein NusB; P | 98.92 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.92 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.91 | |
| COG0781 | 151 | NusB Transcription termination factor [Transcripti | 98.91 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.9 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.89 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.89 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.87 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.86 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.85 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.85 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.85 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.85 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.84 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.84 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.83 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.83 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.83 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.83 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.83 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.82 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.81 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.8 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.78 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.77 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.77 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.75 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.75 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.74 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.73 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.73 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.73 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.72 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.71 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.68 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.68 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.67 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.67 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.67 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.66 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.65 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.65 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.64 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.64 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.61 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.59 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.58 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.58 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.56 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.55 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.54 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.54 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.53 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.53 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.52 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.52 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.51 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.51 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.5 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.49 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.48 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.47 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.45 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.45 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.44 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.44 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.42 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.42 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.4 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.4 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.39 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.36 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.36 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.35 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.35 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.34 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.3 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.29 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.28 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.28 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.27 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.27 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.26 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.25 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.23 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.22 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.21 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.21 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.21 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.21 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.18 | |
| PLN02366 | 308 | spermidine synthase | 98.17 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.15 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.15 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.15 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.14 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.11 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.98 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.98 | |
| PLN02823 | 336 | spermine synthase | 97.96 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.96 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.93 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.92 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.82 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.81 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.81 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.79 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.76 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.73 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.72 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.69 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.69 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.67 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.66 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.65 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.62 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.6 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.58 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.55 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.49 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.48 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.46 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.44 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.37 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.32 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.31 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.31 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.28 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 97.22 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.21 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.17 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.1 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.09 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.06 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.01 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.99 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.89 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.88 | |
| PHA01634 | 156 | hypothetical protein | 96.86 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.86 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 96.79 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.72 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.62 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.61 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 96.61 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.45 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.45 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.4 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.4 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.31 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.29 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 96.18 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.14 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 96.07 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 95.99 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.98 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 95.98 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 95.96 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.75 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 95.66 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.6 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.55 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.44 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.3 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.27 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 95.04 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 94.99 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.96 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.81 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.77 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 94.33 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 94.27 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.21 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.2 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 93.96 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.76 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 93.64 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.39 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.37 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 93.3 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.09 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 92.21 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 91.7 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 91.6 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 91.32 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 91.07 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 89.81 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 89.64 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 89.46 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 89.17 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 88.23 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 88.13 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 87.78 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 87.54 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 87.05 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 86.48 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 86.19 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 86.16 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 86.03 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 85.98 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 85.72 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 85.23 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 84.8 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 84.73 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 84.43 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 83.88 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 83.29 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 82.96 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 82.93 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 82.82 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 82.6 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 82.35 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 82.09 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.06 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 82.04 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 81.92 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 81.63 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 81.39 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 81.04 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 80.82 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 80.39 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 80.25 |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=511.39 Aligned_cols=387 Identities=22% Similarity=0.301 Sum_probs=313.6
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccc--ccchHHHHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK--WKRQEELVY 109 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~--~~~~~~lL~ 109 (441)
++|..|+++|.+|..++.+++ ++.... ...+.+|++|+++|||||+|++..||++|++ ++++. ....+.+||
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~~---~~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~l~~~~r~iLr 78 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSVL---SFLDDKDRRFFKELVWGVVRKEELLDWYINQ--LLKKKDIPPAVRVALR 78 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHH
Confidence 479999999999998776655 333211 1356789999999999999999999999997 55543 123588999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhhHH----H-------------------HHHHHHHHHHccccc--HHHHHHhhCCC
Q 013515 110 ILTYDILFGQEISLVGDAEKFLMLHKGA----I-------------------QLALAQLLVRNKVKS--IEDLMALYQTP 164 (441)
Q Consensus 110 l~~yql~f~~~ip~~~~i~~~v~~~k~~----~-------------------~~~l~~~~~~~~~~~--~e~~~~~~~~~ 164 (441)
+++||++|++.+|.+++++++|+.+|.. + .++++.|+.+++... .++..+.++++
T Consensus 79 ~~~yel~~~~~~p~~aavneaV~lak~~~~~~fVNaVLr~~~r~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~ 158 (431)
T PRK14903 79 MGAYQLLFMNSVPDYAAVSETVKLVKNENFKKLVNAVLRRLRTVPEPKELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWN 158 (431)
T ss_pred HHHHHHHhccCCCcceeHHHHHHHHhccchHHHHHHHHHHHHHhhcchhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999998679999999999887642 1 123344444433221 23334445567
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCC-CCCCCCChhhhcCcccccchhhHHHHHHhCCCCC
Q 013515 165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG 242 (441)
Q Consensus 165 ~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g 242 (441)
+.++|+++|||+++.+.+++.+.|++ |+.+++++++|+++.+.. ...+..++.|++|++++||.+|++++.++++++|
T Consensus 159 ~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g 238 (431)
T PRK14903 159 QEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPG 238 (431)
T ss_pred cCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCC
Confidence 78999999999999999999999976 788888899999998865 3468889999999999999999999999999999
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
++|||+|||||+||++++.++++.++|+|+|+++.|++.+++|++++|+++++++++|+..++.... ++||+|++|||
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~--~~fD~Vl~DaP 316 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ--DTFDRILVDAP 316 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh--ccCCEEEECCC
Confidence 9999999999999999999998889999999999999999999999999889999999987653221 57999999999
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhc
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAM 401 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~ 401 (441)
|||+|+++++||++|. ++++++..++.+|.++|.+++++++ ||.|||||||++++|||+||.+||+ .
T Consensus 317 Csg~G~~~~~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~--~ 384 (431)
T PRK14903 317 CTSLGTARNHPEVLRR----------VNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY--E 384 (431)
T ss_pred CCCCccccCChHHHHh----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH--h
Confidence 9999999999998763 3688999999999999999999887 7999999999999999999999995 4
Q ss_pred CCCeEEecCCC---CCCCccccccccceeeeecccCCCCCCCC
Q 013515 402 SFGFQLATPFP---NGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 402 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+++|++.+... .+...+.. ....+++.|+. .+.|+|+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~P~~-~~dGFf~ 424 (431)
T PRK14903 385 QKDAEVIDIRDKLEEFEVEGIW--DGYGFLMLPDE-TLTPFYV 424 (431)
T ss_pred CCCcEEeccccccccccccccc--CCCcEEECcCC-CCCcEEE
Confidence 77888655311 11111110 01126889986 4568884
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=511.58 Aligned_cols=378 Identities=25% Similarity=0.340 Sum_probs=311.5
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc----cchHHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEEL 107 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~----~~~~~l 107 (441)
++|+.|+++|++++.+ .+++ ++..... ....+.+||+|+++|||||+|++..||++|.+ +++++. ...+.+
T Consensus 2 ~~R~~A~~~L~~i~~~-~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~~l~~~~r~i 77 (434)
T PRK14901 2 NARQLAWEILQAVARG-AYADVALERVLR-KYPLSGADRALVTELVYGCIRRRRTLDAWIDQ--LGKKPAHKQPPDLRWL 77 (434)
T ss_pred CHHHHHHHHHHHHHcC-CchHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHhHHHHHHHHHH--hcCCChhhcCHHHHHH
Confidence 5899999999999885 5544 3332211 12345678999999999999999999999997 455332 235889
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H------------------------------HHHHHHHHHHcc
Q 013515 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA-------I------------------------------QLALAQLLVRNK 150 (441)
Q Consensus 108 L~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~------------------------------~~~l~~~~~~~~ 150 (441)
||+++||++|++++|.++++|++|+.+|.. + .++++.|+.+++
T Consensus 78 Lrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~ 157 (434)
T PRK14901 78 LHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLW 157 (434)
T ss_pred HHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHH
Confidence 999999999998899999999999877531 0 012344444433
Q ss_pred ccc--HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCC-CCCCCChhhhcCccccc
Q 013515 151 VKS--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQ 226 (441)
Q Consensus 151 ~~~--~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~~~~Q 226 (441)
... .+++.+.+++.+.++|+++|||+++.+.+++.+.|+. |+.+++.+++|+++.+..+ ..+..+++|++|++++|
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~q 237 (434)
T PRK14901 158 LEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQ 237 (434)
T ss_pred HHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEE
Confidence 222 2333344556778999999999999999999999877 7888888999999999753 35888999999999999
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.+|++++.++++++|++|||+|||||+||+++++++++.++|+|+|+++.|++.+++|++++|+++|+++++|+..++.
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999999988752
Q ss_pred CCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 307 KDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 307 ~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
... ..++||.|++||||||+|+++++||++|. ++++++..++.+|.++|.+|+++++ ||+|||||||+
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWR----------QTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhh----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 110 02579999999999999999999999774 3689999999999999999999887 79999999999
Q ss_pred CChhcHHHHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 385 HQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 385 ~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+++|||+||.+||+ .+++|++++. . .++.|+.+.+.|+|+
T Consensus 388 ~~~Ene~~v~~~l~--~~~~~~~~~~--~-------------~~~~P~~~~~dGfF~ 427 (434)
T PRK14901 388 HPAENEAQIEQFLA--RHPDWKLEPP--K-------------QKIWPHRQDGDGFFM 427 (434)
T ss_pred ChhhHHHHHHHHHH--hCCCcEecCC--C-------------CccCCCCCCCCcEEE
Confidence 99999999999995 4678886531 0 127799999999984
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=494.15 Aligned_cols=381 Identities=22% Similarity=0.292 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHccChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccch---HHHHHHH
Q 013515 35 RREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQ---EELVYIL 111 (441)
Q Consensus 35 R~~A~~vL~~v~~~~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~~---~~lL~l~ 111 (441)
|+.|+++|++++.++.+++..... ....+.+|++|+++|||||+|++..||++|++ +++++++.. ..+|+++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~---~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~~~L~~~ 75 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL---QQKVSDQDRALLQELCFGVLRTLSQLDWLIKK--LMDRPMKGKPRTVHYLILV 75 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHHHHHH
Confidence 688999999998877776653322 23345678999999999999999999999998 555544322 3377777
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhhHH-------HHH------------------------HHHHHHHHcccc-cHHHHHH
Q 013515 112 TYDILFGQEISLVGDAEKFLMLHKGA-------IQL------------------------ALAQLLVRNKVK-SIEDLMA 159 (441)
Q Consensus 112 ~yql~f~~~ip~~~~i~~~v~~~k~~-------~~~------------------------~l~~~~~~~~~~-~~e~~~~ 159 (441)
+|+++|..++|.++++|++|+.+|.. +.+ +++.|+.+++.. ..+++.+
T Consensus 76 ~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~~~~~~~ 155 (426)
T TIGR00563 76 GLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEELLAEFNALDARYLHPEWLVKRLQKAYPGQWQS 155 (426)
T ss_pred HHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhhcchhHhHHHHcCCCHHHHHHHHHHhHHHHHH
Confidence 77777665589999999999887641 111 222333332111 1233334
Q ss_pred hhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHHHHHHhC
Q 013515 160 LYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA 238 (441)
Q Consensus 160 ~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~ 238 (441)
.+++.+.++|+|+|||+.+.+.+++.+.|++ |+.+.+++++|+++.+..+..+..++.|++|++++||.+|++++..++
T Consensus 156 ~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~ 235 (426)
T TIGR00563 156 ICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLA 235 (426)
T ss_pred HHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhC
Confidence 4556677999999999999999999999977 778888899999999876556888999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCCCCCCCCCCCccE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~--~~~D~~~~~~~~~~~~~fD~ 316 (441)
+++|++|||+|||||+||++++++++ .++|+|+|+++++++.+++|++++|+. +.+ ..+|........ ...+||.
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~-~~~~fD~ 312 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWA-ENEQFDR 312 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccc-cccccCE
Confidence 99999999999999999999999886 689999999999999999999999986 444 666765543211 1257999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKS 395 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~ 395 (441)
|++||||||+|+++++||++|. ++++++.+++.+|.++|.+|+++++ ||.|||||||++++|||+||.+
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~----------~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~ 382 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWL----------RKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKA 382 (426)
T ss_pred EEEcCCCCCCcccccCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHH
Confidence 9999999999999999999764 3689999999999999999999887 8999999999999999999999
Q ss_pred HhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 396 VLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
||+ .+++|++... .... . .....+++.|+.+.+.|+|+
T Consensus 383 ~l~--~~~~~~~~~~--~~~~---~-~~~~~~~~~P~~~~~dGff~ 420 (426)
T TIGR00563 383 FLQ--EHPDFPFEKT--GTPE---Q-VRDGGLQILPHAEEGDGFFY 420 (426)
T ss_pred HHH--hCCCCeeccC--CCcc---c-cCCCcEEECCCCCCCCCeEE
Confidence 996 3667765331 0000 0 11224899999999999995
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=483.02 Aligned_cols=380 Identities=23% Similarity=0.298 Sum_probs=312.7
Q ss_pred HHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccccc----chHH
Q 013515 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~----~~~~ 106 (441)
|++|+.|+++|+++..++.+.+ ++..... ..+.+|++|+++|||||+|++..||++|.+ +++++.. ..+.
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~---~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~r~ 76 (427)
T PRK10901 2 MNLRALAAAAILQVVDQGQSLSAALPALQQ---KVSDKDRALLQELCYGVLRRLPRLEWLIAQ--LLAKPLKGKQRIVHA 76 (427)
T ss_pred chHHHHHHHHHHHHHHcCCcHHHHHHHHHh---hCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence 4789999999999988666554 3333211 344578999999999999999999999998 5555432 2478
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H-------------------------HHHHHHHHHHccccc-
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA-------I-------------------------QLALAQLLVRNKVKS- 153 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~-------------------------~~~l~~~~~~~~~~~- 153 (441)
+||+++||++|++ +|.++++|++|+.+|.. + .++++.|+.+++...
T Consensus 77 iLrla~yell~~~-iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~~~~~ 155 (427)
T PRK10901 77 LLLVGLYQLLYTR-IPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAY 155 (427)
T ss_pred HHHHHHHHHhccC-CCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHHHHHh
Confidence 9999999999997 99999999999887531 0 123344555444332
Q ss_pred HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHH
Q 013515 154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM 232 (441)
Q Consensus 154 ~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l 232 (441)
.+++...+++.+.++|+|+|||+++.+++++.+.|+. ++.+++++++|+++.+.....+..+++|++|.+++||.+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~ 235 (427)
T PRK10901 156 PEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQL 235 (427)
T ss_pred HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHH
Confidence 2344445567788999999999999999999999877 788888899999999976566888999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
++..+++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++|++++|+. ++++++|+..+..... .+
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~-~~ 312 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWD-GQ 312 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcc-cC
Confidence 999999999999999999999999999998754 79999999999999999999999985 6899999987543211 25
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
+||.|++||||||+|+++++||++|.. +++++.++...|.++|.+|+++++ ||.|||||||++++|||+
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~----------~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~ 382 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLR----------RPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQ 382 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccC----------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHH
Confidence 799999999999999999999987643 578999999999999999999887 899999999999999999
Q ss_pred HHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 392 VIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 392 vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+|..+|+ .+++|++++..+ . . ...+++.|+.+.+.|+|+
T Consensus 383 ~v~~~l~--~~~~~~~~~~~~-~------~--~~~~~~~P~~~~~dGff~ 421 (427)
T PRK10901 383 QIKAFLA--RHPDAELLDTGT-P------Q--QPGRQLLPGEEDGDGFFY 421 (427)
T ss_pred HHHHHHH--hCCCCEEecCCC-C------C--CCceEECCCCCCCCCeEE
Confidence 9999995 467788765321 0 0 112799999999999984
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=486.09 Aligned_cols=392 Identities=26% Similarity=0.349 Sum_probs=319.1
Q ss_pred HHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccc---cccchHHH
Q 013515 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS---KWKRQEEL 107 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~---~~~~~~~l 107 (441)
|++|+.|+++|++++.++.+.+ ++..... ....+.+|++|+++||||++|++..||++|.+ ++++ .....+.+
T Consensus 3 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~--~~~~~~~l~~~~r~i 79 (444)
T PRK14902 3 MNARELALEVLIKVENNGAYSNIALNKVLK-KSELSDKDKALLTELVYGTIQRKLTLDYYLAP--FIKKRKKLDPWVRNL 79 (444)
T ss_pred ccHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhHHHHHHHHHH--HhhhhhhCCHHHHHH
Confidence 4789999999999987555443 4333221 12355678999999999999999999999998 5554 11234889
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H----------------------------HHHHHHHHHHcccc
Q 013515 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA-------I----------------------------QLALAQLLVRNKVK 152 (441)
Q Consensus 108 L~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~----------------------------~~~l~~~~~~~~~~ 152 (441)
||+++||++|.+.+|.++++|++|+.+|.. + .++++.|+.+++..
T Consensus 80 Lrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~ 159 (444)
T PRK14902 80 LRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWID 159 (444)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHH
Confidence 999999999998899999999998887531 1 12334455444332
Q ss_pred c--HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchh
Q 013515 153 S--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 229 (441)
Q Consensus 153 ~--~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~s 229 (441)
. .+++.+.+++.+.++|+|+|||+.+.+.+++.+.|++ ++.++++++.|+++.+++ ..+..++.|++|.+++||.+
T Consensus 160 ~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~ 238 (444)
T PRK14902 160 QYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEK-GNIAGTDLFKDGLITIQDES 238 (444)
T ss_pred HhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeC-CCcccChHHhCceEEEEChH
Confidence 1 2233334556677999999999999999999998877 778888899999999986 56889999999999999999
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
|++++.++++++|++|||+|||||++|++++..+++.++|+|+|+++.+++.+++|++++|+++|.++++|+.++.....
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 99999999999999999999999999999999986678999999999999999999999999889999999988653322
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
+.||.|++||||||+|+++++||.+|. ++++++..++.+|..+|.+|+++++ ||.|||||||++++|
T Consensus 319 --~~fD~Vl~D~Pcsg~G~~~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E 386 (444)
T PRK14902 319 --EKFDKILVDAPCSGLGVIRRKPDIKYN----------KTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE 386 (444)
T ss_pred --ccCCEEEEcCCCCCCeeeccCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh
Confidence 579999999999999999999998764 2578999999999999999999887 899999999999999
Q ss_pred cHHHHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 389 NEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
||.||.++++ .+++|++++....+............+|+.|+.+.+.|+|+
T Consensus 387 ne~vv~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 437 (444)
T PRK14902 387 NEEVIEAFLE--EHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFI 437 (444)
T ss_pred hHHHHHHHHH--hCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEE
Confidence 9999999995 35678887755443322111012234899999999999995
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=475.90 Aligned_cols=388 Identities=22% Similarity=0.303 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHHHHccChhhHH-HHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccccc----chHH
Q 013515 32 YFARREAAKVLRLVLRGDARRRA-VGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~~-~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~----~~~~ 106 (441)
|++|+.|+++|++++.++.+++. +..... ....+.+|++|+++|||||+|++..||++|.+ +++.++. ..+.
T Consensus 2 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~rl~~~~r~ 78 (445)
T PRK14904 2 MTARELALQVLQELETGERKSDTLLHRMLE-RSSLERNDRALATELVNGVLRYRLQLDFIISR--FYHHDLEKAAPVLKN 78 (445)
T ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCChhhCCHHHHH
Confidence 47899999999999887766553 332211 12345679999999999999999999999997 5554322 3578
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H------------------------------HHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA-------I------------------------------QLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~------------------------------~~~l~~~~~~~ 149 (441)
+||+++||++|++.+|.++.+|++|+..|.. + .++++.|+.++
T Consensus 79 iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~ 158 (445)
T PRK14904 79 ILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLER 158 (445)
T ss_pred HHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHH
Confidence 9999999999998899999999988776531 0 01334455444
Q ss_pred cccc--HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCccccc
Q 013515 150 KVKS--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQ 226 (441)
Q Consensus 150 ~~~~--~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Q 226 (441)
+... .++..+.+...+.++|+|+|||+++.+.+++.+.|+. ++.+.+.++ + .+.+... .....++|..|.+++|
T Consensus 159 ~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~G~~~vq 235 (445)
T PRK14904 159 WIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGL-P-NFFLSKD-FSLFEPFLKLGLVSVQ 235 (445)
T ss_pred HHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCc-c-eEEEecc-ccccChHHhCcEEEEe
Confidence 3322 1222333455677889999999999999999998876 666555443 3 3445422 2233489999999999
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.+|++++.++++.+|++|||+|||||++|.++++.+++.++|+|+|+++.+++.++++++++|+.+|+++++|+..+..
T Consensus 236 d~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~ 315 (445)
T PRK14904 236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP 315 (445)
T ss_pred CHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc
Confidence 99999999999999999999999999999999999887778999999999999999999999999899999999987753
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. ..||+|++||||||+|+++|+||++|. ++++++..++..|.++|.+++++++ ||+|||||||++
T Consensus 316 ~----~~fD~Vl~D~Pcsg~g~~~r~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 316 E----EQPDAILLDAPCTGTGVLGRRAELRWK----------LTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred C----CCCCEEEEcCCCCCcchhhcCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 579999999999999999999999764 3689999999999999999999887 899999999999
Q ss_pred ChhcHHHHHHHhchhcCCCeEEecCCCCCCCcccc-ccccceeeeecccC-CCCCCCC
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ-FLKALSIYFEPIQW-KTKKAFL 441 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~p~~~-~~~g~~~ 441 (441)
++|||+||.+||+ .+++|++......+...... ......+++.|+.+ .+.|+|+
T Consensus 382 ~~Ene~~v~~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~ 437 (445)
T PRK14904 382 PEENELQIEAFLQ--RHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFA 437 (445)
T ss_pred hhhHHHHHHHHHH--hCCCCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEE
Confidence 9999999999996 36678765432222221111 00122378999987 5588874
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=446.19 Aligned_cols=273 Identities=31% Similarity=0.425 Sum_probs=231.6
Q ss_pred HHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHHHHH
Q 013515 157 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAA 235 (441)
Q Consensus 157 ~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~ 235 (441)
+...+.++..++|+++|||+++.+.+++.+.|+. ++...+..+.+.++.+.....+..+++|.+|++++||.+||+++.
T Consensus 71 ~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~l~a~ 150 (355)
T COG0144 71 AEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPAL 150 (355)
T ss_pred HHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHHHHHH
Confidence 3333445667889999999999999999999988 555554445567888887778889999999999999999999999
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~-V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
+|+|+||++|||+||||||||+|++++|.+.+. |+|+|+++.|++.+++|++++|+.|+.+++.|+..++......++|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 999999999999999999999999999987554 5999999999999999999999999999999998776544322369
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHH
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVI 393 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV 393 (441)
|+||+||||||+|++||+||++|. ++++++.+++++|++||.+|+++++ ||.|||||||+++||||+||
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~----------~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWR----------RTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred cEEEECCCCCCCcccccCcccccc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 999999999999999999999874 4689999999999999999999987 89999999999999999999
Q ss_pred HHHhchhcCCCeEEecCCCCCCCcccc--ccccceeeeecccCCCCCCCC
Q 013515 394 KSVLPIAMSFGFQLATPFPNGTAEASQ--FLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 394 ~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~p~~~~~~g~~~ 441 (441)
.+||+ ++++|+++.....|...... ..-...+++.|+.|.+.|+|.
T Consensus 301 ~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~dGFFi 348 (355)
T COG0144 301 ERFLE--RHPDFELEPVRLPWGPLFEGLGSELGKTRRLYPHVHGTDGFFI 348 (355)
T ss_pred HHHHH--hCCCceeecccccccccccccccccCCeEEECCCCCCCCCeEE
Confidence 99995 46788887764445441111 111223899999997799984
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-56 Score=453.33 Aligned_cols=269 Identities=25% Similarity=0.299 Sum_probs=229.9
Q ss_pred HhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCC----CCCCCChhhhcCcccccchhhHHH
Q 013515 159 ALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG----CDLHVHPLIVNGCVFLQGKASSMV 233 (441)
Q Consensus 159 ~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~g~~~~Qd~ss~l~ 233 (441)
..+++.+.++|.++|||++|++.+++.+.|++ ++.+++.+|+++++.+..+ ..+..++.|..|.|++||.+||++
T Consensus 24 ~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~l~ 103 (470)
T PRK11933 24 DFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALPLGNTAEHLSGLFYIQEASSMLP 103 (470)
T ss_pred HHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCCcccChHHHCCcEEEECHHHHHH
Confidence 33345677899999999999999999999877 7888889999999988642 247889999999999999999999
Q ss_pred HHHh--CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 234 AAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 234 ~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+.+| ++++|++|||+||||||||+++++++++.|.|+|+|+++.|++.+++|++++|+.||.+++.|+..+....+
T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~-- 181 (470)
T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP-- 181 (470)
T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch--
Confidence 9999 899999999999999999999999999889999999999999999999999999999999999987754432
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
..||+||+||||||+|++||+||++|. |+++++..++.+|++||.+|+++++ ||+|||||||++++|||
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~----------~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKN----------WSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhh----------CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 579999999999999999999998652 5799999999999999999999988 89999999999999999
Q ss_pred HHHHHHhchhcCCC-eEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 391 DVIKSVLPIAMSFG-FQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 391 ~vV~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+||++||+. +++ +++++....|............+|+.|+.+.+.|+|+
T Consensus 252 ~vV~~~L~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 301 (470)
T PRK11933 252 AVCLWLKET--YPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFV 301 (470)
T ss_pred HHHHHHHHH--CCCcEEeccccccccccccccCCCCeEEECCCCCCCcceee
Confidence 999999963 555 4444322223321110111224899999999999995
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=420.93 Aligned_cols=266 Identities=34% Similarity=0.502 Sum_probs=226.2
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCe--EEeCCCCCCCCChhhhcCcccccchhhHHHHHHhCC
Q 013515 163 TPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDL--LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAP 239 (441)
Q Consensus 163 ~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~ 239 (441)
+++.++|+|+|||+++++++++.+.|++ |+.+++.++.++. +.......+..++.|++|++++||.+|++++.+|++
T Consensus 4 ~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~L~~ 83 (283)
T PF01189_consen 4 ANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALALDP 83 (283)
T ss_dssp HCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHHHTT
T ss_pred ccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEecccccccccccccc
Confidence 4567899999999999999999999988 7888888888888 444555678899999999999999999999999999
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++|+.|||+||||||||++++++|.+.|.|+|+|++..|+..++++++++|+.++.++..|+........ ...||.|++
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~-~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP-ESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH-TTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc-ccccchhhc
Confidence 9999999999999999999999999899999999999999999999999999999999899887743221 135999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC----C-CcEEEEEcCCCCChhcHHHHH
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP----G-VERVVYSTCSIHQVENEDVIK 394 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~----~-~G~lvYsTCS~~~~ENe~vV~ 394 (441)
||||||+|+++++||++|. ++++++..++.+|++||++|++++ + ||+|||||||++++|||+||+
T Consensus 163 DaPCSg~G~i~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~ 232 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWR----------RSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVE 232 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHH----------E-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHH
T ss_pred CCCccchhhhhhccchhhc----------ccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHH
Confidence 9999999999999999763 357899999999999999999999 7 899999999999999999999
Q ss_pred HHhchhcCCCeEEecCCCCCCCcccc--ccccceeeeecccCCCCCCCC
Q 013515 395 SVLPIAMSFGFQLATPFPNGTAEASQ--FLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+||+ .+++|++++....+...+.. ......+++.|+.+.+.|+|.
T Consensus 233 ~fl~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFi 279 (283)
T PF01189_consen 233 KFLK--RHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFI 279 (283)
T ss_dssp HHHH--HSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEE
T ss_pred HHHH--hCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEE
Confidence 9996 46789987744333322211 112234899999999999994
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=382.95 Aligned_cols=276 Identities=27% Similarity=0.360 Sum_probs=235.6
Q ss_pred cHHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCccc-ccCCCCCeEEeC-CCCCCCCChhhhcCcccccchh
Q 013515 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQ-KDDLVPDLLILP-PGCDLHVHPLIVNGCVFLQGKA 229 (441)
Q Consensus 153 ~~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~g~~~~Qd~s 229 (441)
...++++.+++++.+.|+++|.||+|.-+.+....|.. |+... ...|..-++++. +-..+...+.|..|++.+|+.+
T Consensus 150 ~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~s 229 (460)
T KOG1122|consen 150 PLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNAS 229 (460)
T ss_pred cHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCc
Confidence 35667777788888999999999999877777776655 54432 234666666664 4457888999999999999999
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
|.++++.|+|+||++||||||+|||||+|+|.+|.+.|.|+|+|.+..|++.++.|+.++|++|..+.+.|...++...-
T Consensus 230 S~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~ 309 (460)
T KOG1122|consen 230 SFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF 309 (460)
T ss_pred ccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764331
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
..+||+||+|+||||+|++.+.+..++. ++.+++.++..+|+++|.+|..+++ ||+||||||||.++|
T Consensus 310 -~~~fDRVLLDAPCSGtgvi~K~~~vkt~----------k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460)
T KOG1122|consen 310 -PGSFDRVLLDAPCSGTGVISKDQSVKTN----------KTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460)
T ss_pred -CcccceeeecCCCCCCcccccccccccc----------hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhh
Confidence 1379999999999999999888777553 3689999999999999999999998 899999999999999
Q ss_pred cHHHHHHHhchhcCCCeEEecCCCCCCCccccccc------cceeeeecccCCCCCCCC
Q 013515 389 NEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLK------ALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~f~p~~~~~~g~~~ 441 (441)
||+||+++|. +++.+++++.-+.|...|.-..+ ..--||+||+|.-.|+|+
T Consensus 379 NE~vV~yaL~--K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~hnmdgffv 435 (460)
T KOG1122|consen 379 NEAVVDYALK--KRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHVHNMDGFFV 435 (460)
T ss_pred hHHHHHHHHH--hCCceEeccccccCCCCCcccCcccCcchhheeeecCcccCCchHHH
Confidence 9999999995 46789999988899888811111 123799999999988884
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=376.59 Aligned_cols=254 Identities=28% Similarity=0.338 Sum_probs=213.5
Q ss_pred EEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCC-CCCCCCChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEc
Q 013515 172 VRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 249 (441)
Q Consensus 172 ~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ 249 (441)
+|||++|++++++++.|++ ++.+++.. .++.+.+.. ...+..++.|.+|++++||.+|++++.++++++|++|||+|
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ 79 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMA 79 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEEC
Confidence 6999999999999999987 66665543 456666653 33588999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccc
Q 013515 250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 250 ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
||||+||+++++++++.+.|+|+|+++.+++.+++|++++|+.+|.+++.|+..+.... .+||+||+||||||+|++
T Consensus 80 ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~---~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 80 AAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV---PKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc---cCCCEEEEcCCCCCCccc
Confidence 99999999999999878899999999999999999999999989999999988765432 569999999999999999
Q ss_pred ccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEe
Q 013515 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 330 ~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~ 408 (441)
+++||.+|. ++++++..++.+|.++|.+|+++++ ||+|||||||++++|||+||++||+. ++++.+.
T Consensus 157 ~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~--~~~~~~~ 224 (264)
T TIGR00446 157 RKDPSRKKN----------WSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK--RPDVVEE 224 (264)
T ss_pred ccChhhhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh--CCCcEEe
Confidence 999998763 3689999999999999999999887 79999999999999999999999963 5566654
Q ss_pred cCCCC--CCCccccccccceeeeecccCCCCCCCC
Q 013515 409 TPFPN--GTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 409 ~~~~~--~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
..... |...........++|+.|+.+.+.|+|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 259 (264)
T TIGR00446 225 LPKGDEFFGANKGKEEVKGALRVFPQIYDCEGFFV 259 (264)
T ss_pred ccCCcccccccccccccCCeEEECCCCCCCCcEEE
Confidence 21111 1111100011234899999999999995
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=348.04 Aligned_cols=385 Identities=37% Similarity=0.536 Sum_probs=294.4
Q ss_pred HHHHHHHHHHccChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccchHHHHHHHHHHHH
Q 013515 37 EAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDIL 116 (441)
Q Consensus 37 ~A~~vL~~v~~~~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~~~~lL~l~~yql~ 116 (441)
.|+++|..+.... ++++.+.++.+.++...++++|..+++++.+||.+++.+....-..........+..|+++
T Consensus 3 ~~~~~l~~~~~~~------~s~k~l~~~s~~q~~k~~l~~v~~~~k~r~~l~~i~~d~~~~~~~~~~~~~~~~~l~~~ll 76 (413)
T KOG2360|consen 3 EAAEILRDVEKKE------GSIKMLVYESSKQNPKRTLALVCETLKYRPVLDEILEDSELKDAKMLARLVHMVVLVHDLL 76 (413)
T ss_pred cchhhhhhHHhhh------hhHHHHHHhhhccchHHHHHHHHHHHhhhHHHHHHHhcchhhhhhhhcccccceeehhhhh
Confidence 4678888886642 4566666766667889999999999999999999999754322111111123346789999
Q ss_pred hcCCCCch-----HHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-
Q 013515 117 FGQEISLV-----GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK- 190 (441)
Q Consensus 117 f~~~ip~~-----~~i~~~v~~~k~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~- 190 (441)
|....+.. .++.+.....+..+..........+.....+++.- ..+ .+.|.|+|+||++.+.++.+..|..
T Consensus 77 ~~~~~~~~~~~~~~el~~~~~~~~~e~~~~~v~~~~k~~~~~~~~l~~--t~~-~~~pr~vRINtlk~~~~e~~~~L~~e 153 (413)
T KOG2360|consen 77 LSKIKRSGLMIDKRELKVIRLRLILRLKIETVMLKKKRKVKSLRELKL--TMK-IPLPRYVRINTLKGTTDEALDYLDYE 153 (413)
T ss_pred hcccccccceeccchhhhhhHHHHhhhHHHHHHHHhhhhHHHHHHhhc--cCC-CCCceeEEeecccCchhhhhhhhhhh
Confidence 86544322 24445544444433332222222333333333332 123 5889999999999999888887765
Q ss_pred c---------CcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHH
Q 013515 191 Q---------FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261 (441)
Q Consensus 191 ~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~ 261 (441)
+ ..+..|++++..+.++....+..+++|++|.+++||.+|++++++|+|.+|+.|+|+||+||.||+|++.
T Consensus 154 ~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~ 233 (413)
T KOG2360|consen 154 KWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAA 233 (413)
T ss_pred hhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHH
Confidence 1 1234577788888887666788899999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCC
Q 013515 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHA 341 (441)
Q Consensus 262 ~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~ 341 (441)
.+.+.|+|+|+|.+..|.+.++..+...|+.++....+|+... ..+..+..+..||+||+|||+|+..|.-.+.-
T Consensus 234 i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~---- 308 (413)
T KOG2360|consen 234 IMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQDEDPG---- 308 (413)
T ss_pred HhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccceeeccC----
Confidence 9999999999999999999999999999999999999999987 45555788899999999999999865422211
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHHhchhcCCC-eEEec--CCCCCCCcc
Q 013515 342 SGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG-FQLAT--PFPNGTAEA 418 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~-~~~~~--~~~~~~~~~ 418 (441)
......+++..|...|..++.||+.+++...+||||||++.+|||.||++.|.. ++. +.+.. +.|.|+++|
T Consensus 309 ----~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~--~p~~~~l~~kK~~p~w~~rg 382 (413)
T KOG2360|consen 309 ----AETESPERLENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ--NPDAKRLAPKKVLPAWPHRG 382 (413)
T ss_pred ----CCcccHHHHHHHHHHHHHHHHHHhcCCchhheeeecchhhhhhhhHHHHHHHhh--ChhHhhhchhhcchhhhhcC
Confidence 112357999999999999999999998889999999999999999999999964 344 44555 789999998
Q ss_pred ccc--cccceeeeecccCCCCCCCC
Q 013515 419 SQF--LKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 419 ~~~--~~~~~~~f~p~~~~~~g~~~ 441 (441)
.+. .-..++|..|..+-+.|+|+
T Consensus 383 ~~~~~~~e~~lr~~p~~~~~~gffv 407 (413)
T KOG2360|consen 383 LSTFSGAEHCLRASPKSTLTIGFFV 407 (413)
T ss_pred CccccccccceecccCCCCcceEEE
Confidence 221 11246999999999999984
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=288.75 Aligned_cols=197 Identities=29% Similarity=0.384 Sum_probs=161.5
Q ss_pred cccCCCCCeEEeCCCC---------CCCCChhh-----hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHH
Q 013515 195 QKDDLVPDLLILPPGC---------DLHVHPLI-----VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA 260 (441)
Q Consensus 195 ~~~~~~~~~~~~~~~~---------~l~~~~~~-----~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la 260 (441)
...+|.|+.+.++... .+...+.| ..|.++.||.+|++++.+|+++||++|||||||||+||+++.
T Consensus 95 ~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLL 174 (375)
T KOG2198|consen 95 FELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLL 174 (375)
T ss_pred ccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHH
Confidence 3457777777665432 12223333 458899999999999999999999999999999999999998
Q ss_pred HHhcC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCCCccEEEEcCCCCCCccccc
Q 013515 261 ALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSEVRAILLDPSCSGSGTAAE 331 (441)
Q Consensus 261 ~~~~~---~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~~~fD~Il~DpPCSg~G~~~~ 331 (441)
+.+.. .|.|+|+|.+..|+..+.+.+++....++.+...|+...+... ..+..||+||+|+||||.|++++
T Consensus 175 eal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk 254 (375)
T KOG2198|consen 175 EALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRK 254 (375)
T ss_pred HHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCccccc
Confidence 87753 3699999999999999999998888778888888877766431 13467999999999999999999
Q ss_pred ccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchh
Q 013515 332 RLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 332 ~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~ 400 (441)
.+++.- ..|+..+-..|..+|.+||.+++++++ ||.|||||||++|.|||+||+++|+..
T Consensus 255 ~~~i~~---------~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 255 NPNIWK---------EGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKV 315 (375)
T ss_pred CchHhh---------hhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHh
Confidence 888721 114455556899999999999999998 899999999999999999999999753
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=155.08 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=117.8
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
..++++|+|..|..+..++..+. +|.+|||+|||+|+++++++. .+..+|+++|+++.+++.+++|++.+|++
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 56789999999988777776654 588999999999999886653 45579999999999999999999999984
Q ss_pred cEEEEeccCCCCCCCCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 013515 293 NIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 371 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~ 371 (441)
+++++++|+.++..... ..++||.|++|||+... +.+.+.........++..|.++
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-----------------------~k~~l~~~~~~y~~l~~~a~~l 328 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-----------------------NKSQLMGACRGYKDINMLAIQL 328 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-----------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence 79999999987642210 12579999999997431 1233444444567788889898
Q ss_pred CC-CcEEEEEcCCCCChh--cHHHHHHHh
Q 013515 372 PG-VERVVYSTCSIHQVE--NEDVIKSVL 397 (441)
Q Consensus 372 ~~-~G~lvYsTCS~~~~E--Ne~vV~~~l 397 (441)
++ +|.|+++|||-+-.+ =.++|.+..
T Consensus 329 Lk~gG~lv~~scs~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 329 LNPGGILLTFSCSGLMTSDLFQKIIADAA 357 (396)
T ss_pred cCCCeEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 87 799999999966544 344554444
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-15 Score=137.60 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=126.9
Q ss_pred hhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEE
Q 013515 218 IVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEV 296 (441)
Q Consensus 218 ~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~ 296 (441)
++-+--.+-.+.+.+++..+++.||++|+|+|.|+|..|..||..+++.|+|+.+|+.++.++.|++|++..|+.+ |++
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 5555556666778899999999999999999999999999999999999999999999999999999999999966 999
Q ss_pred EeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-Cc
Q 013515 297 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VE 375 (441)
Q Consensus 297 ~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G 375 (441)
..+|+.+.... ..||+|++|-| ++| +.|.++.+.++ ||
T Consensus 151 ~~~Dv~~~~~~----~~vDav~LDmp------------------------~PW-------------~~le~~~~~Lkpgg 189 (256)
T COG2519 151 KLGDVREGIDE----EDVDAVFLDLP------------------------DPW-------------NVLEHVSDALKPGG 189 (256)
T ss_pred Eeccccccccc----cccCEEEEcCC------------------------ChH-------------HHHHHHHHHhCCCc
Confidence 99999886654 47999999999 223 67899988877 44
Q ss_pred -EEEEEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCCCCcc
Q 013515 376 -RVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEA 418 (441)
Q Consensus 376 -~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~ 418 (441)
.++|+.|. ++|++.++..+..+|.-.+++....++.
T Consensus 190 ~~~~y~P~v-------eQv~kt~~~l~~~g~~~ie~~E~l~R~~ 226 (256)
T COG2519 190 VVVVYSPTV-------EQVEKTVEALRERGFVDIEAVETLVRRW 226 (256)
T ss_pred EEEEEcCCH-------HHHHHHHHHHHhcCccchhhheeeehee
Confidence 78999998 8888888766666776655544433333
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=149.39 Aligned_cols=148 Identities=21% Similarity=0.230 Sum_probs=122.5
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~ 292 (441)
..+.++|.|..|..+...+...+. |.+|||+||.||++|+++|. +++.+|+++|+|...++.+++|++.+|+ +
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 346789999999999998888775 99999999999999998875 4667999999999999999999999998 3
Q ss_pred cEEEEeccCCCCCCCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 013515 293 NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 371 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~ 371 (441)
.+.++++|+.++.... .+..+||+|++|||-.+ + +++......+-...++..|+++
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~-----r------------------~k~~~~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA-----R------------------SKKQEFSAQRDYKDLNDLALRL 325 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcccc-----c------------------CcccchhHHHHHHHHHHHHHHH
Confidence 5889999998876432 22358999999999432 2 2333356677788999999998
Q ss_pred CC-CcEEEEEcCCCCChhcH
Q 013515 372 PG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 372 ~~-~G~lvYsTCS~~~~ENe 390 (441)
++ +|+++.||||-+-...+
T Consensus 326 L~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 326 LAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred cCCCCEEEEEecCCccCHHH
Confidence 87 79999999998877774
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=138.11 Aligned_cols=142 Identities=22% Similarity=0.296 Sum_probs=107.1
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLN 303 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~ 303 (441)
+..+.+.+++..+++.||++||+.|.|+|..|..|+..+++.|+|+.+|.++++++.+++|++.+|+ ++|++.+.|+..
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 3345566888899999999999999999999999999999999999999999999999999999999 589999999965
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-C-Cc-EEEEE
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-G-VE-RVVYS 380 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~-~-~G-~lvYs 380 (441)
-.........||.|++|-|. | | ..+.++.+.| + || ..+||
T Consensus 104 ~g~~~~~~~~~DavfLDlp~---------P---------------w-------------~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDLPD---------P---------------W-------------EAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp G--STT-TTSEEEEEEESSS---------G---------------G-------------GGHHHHHHHE-EEEEEEEEEE
T ss_pred ccccccccCcccEEEEeCCC---------H---------------H-------------HHHHHHHHHHhcCCceEEEEC
Confidence 33211112579999999992 2 2 4467777766 4 55 78899
Q ss_pred cCCCCChhcHHHHHHHhchhcCCCeEEecC
Q 013515 381 TCSIHQVENEDVIKSVLPIAMSFGFQLATP 410 (441)
Q Consensus 381 TCS~~~~ENe~vV~~~l~~~~~~~~~~~~~ 410 (441)
.|- +||.+.++..+..+|..++.
T Consensus 147 P~i-------eQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 147 PCI-------EQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp SSH-------HHHHHHHHHHHHTTEEEEEE
T ss_pred CCH-------HHHHHHHHHHHHCCCeeeEE
Confidence 997 88888887666677765543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-15 Score=141.93 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=105.8
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~ 292 (441)
..+.+.|+|..|.....++.... .|.+|||++|.+|+++++.+. +++.+|+++|.|...++.+++|++.+|+ +
T Consensus 100 ~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 100 TDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp SSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred CCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 45788999999999999988875 488999999999999998764 5667899999999999999999999997 4
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
.++++.+|+.+........++||+|++|||..+-|. +. +.+-..+++..|++++
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~--------------------~~------~~~~y~~L~~~a~~ll 228 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK--------------------FD------LERDYKKLLRRAMKLL 228 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST--------------------CE------HHHHHHHHHHHHHHTE
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH--------------------HH------HHHHHHHHHHHHHHhc
Confidence 799999998764422111268999999999653221 11 2245678899999988
Q ss_pred C-CcEEEEEcCCCCChhc
Q 013515 373 G-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 373 ~-~G~lvYsTCS~~~~EN 389 (441)
+ ||.|+.||||.+-..+
T Consensus 229 ~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 229 KPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEEEEEE--TTS-HH
T ss_pred CCCCEEEEEcCCcccCHH
Confidence 7 7999999999888775
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-14 Score=151.65 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=116.3
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
....+.|.|..|.....++..+. .|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++
T Consensus 515 ~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~ 589 (702)
T PRK11783 515 TDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGR 589 (702)
T ss_pred CCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 45678999999988888877665 4889999999999999999874 4468999999999999999999999985
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
+++++++|+.++.... ..+||.|++|||+.+.+- . .+++......+..++..+.+++
T Consensus 590 ~v~~i~~D~~~~l~~~--~~~fDlIilDPP~f~~~~---~------------------~~~~~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 590 QHRLIQADCLAWLKEA--REQFDLIFIDPPTFSNSK---R------------------MEDSFDVQRDHVALIKDAKRLL 646 (702)
T ss_pred ceEEEEccHHHHHHHc--CCCcCEEEECCCCCCCCC---c------------------cchhhhHHHHHHHHHHHHHHHc
Confidence 7999999987654222 157999999999875431 0 1122234455778888898887
Q ss_pred C-CcEEEEEcCCCCChhc
Q 013515 373 G-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 373 ~-~G~lvYsTCS~~~~EN 389 (441)
+ ||.+++++|+-+....
T Consensus 647 ~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 647 RPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred CCCCEEEEEeCCccCChh
Confidence 7 7999999999776655
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=119.34 Aligned_cols=137 Identities=22% Similarity=0.312 Sum_probs=109.7
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
.+-..+....|.+.||++++|+|||+|+.|..++ ++++.++|+|+|.++++++..++|++++|++|++++.+|+.+...
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 4557788888999999999999999999999999 667889999999999999999999999999999999999987765
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
.. .+||+|++.-. |.+ ..+|+.++..++ ||+||--.-
T Consensus 99 ~~---~~~daiFIGGg----~~i--------------------------------~~ile~~~~~l~~ggrlV~nai--- 136 (187)
T COG2242 99 DL---PSPDAIFIGGG----GNI--------------------------------EEILEAAWERLKPGGRLVANAI--- 136 (187)
T ss_pred CC---CCCCEEEECCC----CCH--------------------------------HHHHHHHHHHcCcCCeEEEEee---
Confidence 43 47999997432 211 478999999877 788887433
Q ss_pred ChhcHHHHHHHhchhcCCCe-EEec
Q 013515 386 QVENEDVIKSVLPIAMSFGF-QLAT 409 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~-~~~~ 409 (441)
..||+....+.++ +.++ +++.
T Consensus 137 tlE~~~~a~~~~~---~~g~~ei~~ 158 (187)
T COG2242 137 TLETLAKALEALE---QLGGREIVQ 158 (187)
T ss_pred cHHHHHHHHHHHH---HcCCceEEE
Confidence 3566666666653 4555 5433
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=138.27 Aligned_cols=133 Identities=23% Similarity=0.358 Sum_probs=104.1
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..+...++..++++|||+.||.|++|+++|.. ..+|+|+|+++++++.+++|++.+|++|+++..+|+..+......
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34445677788999999999999999999965 479999999999999999999999999999999999988866432
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcH
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe 390 (441)
...||.|++|||.+|.+ ..+++...++ ++-+|||++| |.
T Consensus 360 ~~~~d~VvvDPPR~G~~----------------------------------~~~lk~l~~~-~p~~IvYVSC------NP 398 (432)
T COG2265 360 GYKPDVVVVDPPRAGAD----------------------------------REVLKQLAKL-KPKRIVYVSC------NP 398 (432)
T ss_pred cCCCCEEEECCCCCCCC----------------------------------HHHHHHHHhc-CCCcEEEEeC------CH
Confidence 35789999999998875 1344444443 4578999999 66
Q ss_pred HHHHHHhchhcCCCeEE
Q 013515 391 DVIKSVLPIAMSFGFQL 407 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~ 407 (441)
.-..+-+....+.+.++
T Consensus 399 ~TlaRDl~~L~~~gy~i 415 (432)
T COG2265 399 ATLARDLAILASTGYEI 415 (432)
T ss_pred HHHHHHHHHHHhCCeEE
Confidence 66665554333445433
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=132.22 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=100.9
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
+..++.++++++|+.|||.|||+|+.+..++.. ...|+++|+++.+++.++.|++.+|+.++.+.++|+.+++...
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~- 246 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS- 246 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc-
Confidence 344455667889999999999999998876553 3689999999999999999999999988889999999877543
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
++||.|++||||....... ...+..++.++|..+.+.++ ||+++|.+++-.
T Consensus 247 --~~~D~Iv~dPPyg~~~~~~-----------------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 247 --ESVDAIATDPPYGRSTTAA-----------------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred --CCCCEEEECCCCcCccccc-----------------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 6799999999985422110 01234567889999998776 799999988743
|
This family is found exclusively in the Archaea. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=134.08 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=73.7
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.++..++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|+++++++++|+.++.... ...||
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~--~~~~D 242 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ--GEVPD 242 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--CCCCe
Confidence 444446789999999999999999984 3689999999999999999999999988999999998765322 14699
Q ss_pred EEEEcCCCCCCc
Q 013515 316 AILLDPSCSGSG 327 (441)
Q Consensus 316 ~Il~DpPCSg~G 327 (441)
.|++|||++|.+
T Consensus 243 ~Vv~dPPr~G~~ 254 (315)
T PRK03522 243 LVLVNPPRRGIG 254 (315)
T ss_pred EEEECCCCCCcc
Confidence 999999987754
|
|
| >cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=113.69 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc----cchHH
Q 013515 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~----~~~~~ 106 (441)
|++|..|+++|+++..++.+.+ .+...... .. ++.|++++++|||||+|++..||++|++ ++++++ ...+.
T Consensus 1 ~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~-~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~--~l~~~~~~~~~~~~~ 76 (126)
T cd00620 1 MNARSTAAEVLRDVLQRGASLNAVLSALQKK-DK-SDRDRGLATELVYGTLRWLALLDWIINP--LLKKPDVGKDPDVRN 76 (126)
T ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence 4679999999999988554433 33322111 12 4578999999999999999999999997 566543 23578
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+|++|+||++|++ +|+++.+|++|+..|.. -...|.|.+++.
T Consensus 77 iLr~a~~el~~~~-~p~~avvneaVelak~~~~~~~~~fVNaVLr~ 121 (126)
T cd00620 77 LLRLGLYQLLYLD-VPPHAAVDETVEIAKIRKDLGRAGLVNAVLRR 121 (126)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 9999999999997 99999999999998752 224566666654
|
The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=122.27 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=97.9
Q ss_pred CcccccchhhHHHHHHh---CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 013515 221 GCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 297 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l---~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~ 297 (441)
|.|..|..+ .+++..+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|++.+|. ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 455566543 4444443 4678899999999999999998875 336999999999999999999999887 58889
Q ss_pred eccCCCCCCCCCCCCCccEEEEcCCCCC---CcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-
Q 013515 298 HGDFLNLDPKDPAYSEVRAILLDPSCSG---SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG- 373 (441)
Q Consensus 298 ~~D~~~~~~~~~~~~~fD~Il~DpPCSg---~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~- 373 (441)
++|+...... ++||.|++|||... .+...+.++..|.. . ......+..++..+.++++
T Consensus 90 ~~d~~~~~~~----~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 90 RGDWARAVEF----RPFDVVVSNPPYVPAPPDAPPSRGPARAWDA----------G----PDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred ECchhhhccC----CCeeEEEECCCCCCCCcccccccChhHhhhC----------C----CcHHHHHHHHHHHHHHhcCC
Confidence 9998764321 57999999998542 22222222221110 0 0122456788999998887
Q ss_pred CcEEEEEcCCC
Q 013515 374 VERVVYSTCSI 384 (441)
Q Consensus 374 ~G~lvYsTCS~ 384 (441)
||.+++.+.+.
T Consensus 152 gG~l~~~~~~~ 162 (223)
T PRK14967 152 GGSLLLVQSEL 162 (223)
T ss_pred CcEEEEEEecc
Confidence 78777644333
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.4e-13 Score=136.90 Aligned_cols=90 Identities=29% Similarity=0.424 Sum_probs=75.0
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYS 312 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~~ 312 (441)
...+++.+|++|||+|||+|..++.++... .+|+|+|+++.+++.+++|++.+|+++++++++|+.+.....+ ...
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence 345667789999999999999999998873 6899999999999999999999999999999999976432110 014
Q ss_pred CccEEEEcCCCCCC
Q 013515 313 EVRAILLDPSCSGS 326 (441)
Q Consensus 313 ~fD~Il~DpPCSg~ 326 (441)
+||.|++|||++|.
T Consensus 367 ~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 367 GFDKVLLDPPRAGA 380 (443)
T ss_pred CCCEEEECcCCcCh
Confidence 69999999998763
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=119.91 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=99.7
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
+...++...+++.+|++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++.+|+ +++.++.+|+.+..+
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~ 106 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF 106 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh
Confidence 3455556678899999999999999999999998877668999999999999999999999994 789999999876533
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
... ..||.|+++.. .. + ...++..+.+.++ +|.+|+.+|++
T Consensus 107 ~~~--~~~D~V~~~~~---~~------~--------------------------~~~~l~~~~~~LkpgG~lv~~~~~~- 148 (198)
T PRK00377 107 TIN--EKFDRIFIGGG---SE------K--------------------------LKEIISASWEIIKKGGRIVIDAILL- 148 (198)
T ss_pred hcC--CCCCEEEECCC---cc------c--------------------------HHHHHHHHHHHcCCCcEEEEEeecH-
Confidence 221 57999998531 00 0 1356778888777 78999888854
Q ss_pred ChhcHHHHHHHh
Q 013515 386 QVENEDVIKSVL 397 (441)
Q Consensus 386 ~~ENe~vV~~~l 397 (441)
|+...+...|
T Consensus 149 --~~~~~~~~~l 158 (198)
T PRK00377 149 --ETVNNALSAL 158 (198)
T ss_pred --HHHHHHHHHH
Confidence 3444455555
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=121.75 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=83.5
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|....+......+...+++++|++|||+|||+|..+..++...+..++|+++|+++.+++.++++++++|++|++++++|
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 33333333345666778899999999999999999999999876668899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+....... ..||+|++|+++
T Consensus 137 ~~~~~~~~---~~fD~Ii~~~~~ 156 (215)
T TIGR00080 137 GTQGWEPL---APYDRIYVTAAG 156 (215)
T ss_pred cccCCccc---CCCCEEEEcCCc
Confidence 97654332 579999999875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.9e-13 Score=118.77 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=94.2
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.++.+++..+...++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.+++.+++++..|..+...
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 5688888888877788999999999999999999874 446899999999999999999999999879999999876544
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
. .+||.|+++||....+ ......+.+++..|.++|+ +|.++
T Consensus 96 ~----~~fD~Iv~NPP~~~~~---------------------------~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 D----GKFDLIVSNPPFHAGG---------------------------DDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp T----TCEEEEEE---SBTTS---------------------------HCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred c----cceeEEEEccchhccc---------------------------ccchhhHHHHHHHHHHhccCCCEEE
Confidence 2 7899999999942211 1123455788999988887 67553
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=108.42 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
||.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+. ++|+++++|+ ...... ...||.|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~--~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF--LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT--SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc--CCCCCEEEE
Confidence 68899999999999999999954 458999999999999999999976665 7899999999 322222 257999997
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+. .+....+ .. ..+.++|+.+.+.++ ||++|.+||
T Consensus 77 ~~-~~~~~~~--------------------------~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 77 SG-FTLHFLL--------------------------PL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp CS-GSGGGCC--------------------------HH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-Ccccccc--------------------------ch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 66 2111111 11 344677888888776 799999998
|
... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=122.92 Aligned_cols=123 Identities=24% Similarity=0.342 Sum_probs=97.3
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
-....+..+.+.+|++|||+|||||..+..+++..+ .++|+++|+|+.||+.+++.+...|..+|+++++|+.++|..+
T Consensus 39 Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D 117 (238)
T COG2226 39 WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD 117 (238)
T ss_pred HHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC
Confidence 344556666667999999999999999999999987 7999999999999999999999999888999999999999877
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
.+||+|.+ + .| +|+-+|+ .+.|+.+.+.+| ||+++- +.++.-
T Consensus 118 ---~sFD~vt~---~--fg-lrnv~d~--------------------------~~aL~E~~RVlKpgG~~~v--le~~~p 160 (238)
T COG2226 118 ---NSFDAVTI---S--FG-LRNVTDI--------------------------DKALKEMYRVLKPGGRLLV--LEFSKP 160 (238)
T ss_pred ---CccCEEEe---e--eh-hhcCCCH--------------------------HHHHHHHHHhhcCCeEEEE--EEcCCC
Confidence 78999975 2 33 2333332 367888999887 564432 344444
Q ss_pred hc
Q 013515 388 EN 389 (441)
Q Consensus 388 EN 389 (441)
++
T Consensus 161 ~~ 162 (238)
T COG2226 161 DN 162 (238)
T ss_pred Cc
Confidence 44
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-12 Score=113.40 Aligned_cols=130 Identities=20% Similarity=0.318 Sum_probs=101.3
Q ss_pred cccchhhHHHHH--HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 013515 224 FLQGKASSMVAA--ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (441)
Q Consensus 224 ~~Qd~ss~l~~~--~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~ 301 (441)
+.-+.++.++.. +.+.-.|..|+|+|||+|..++..+.+ +..+|+|+|+++++++.+++|..++ ..+|.++++|+
T Consensus 26 Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv 102 (198)
T COG2263 26 TPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADV 102 (198)
T ss_pred CChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcch
Confidence 333444444433 334556889999999999988876654 4579999999999999999999994 46899999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYST 381 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsT 381 (441)
.++. ..||.+++||| .|+.++++|. ..|..|++. +.+|||
T Consensus 103 ~~~~------~~~dtvimNPP---FG~~~rhaDr---------------------------~Fl~~Ale~---s~vVYs- 142 (198)
T COG2263 103 SDFR------GKFDTVIMNPP---FGSQRRHADR---------------------------PFLLKALEI---SDVVYS- 142 (198)
T ss_pred hhcC------CccceEEECCC---CccccccCCH---------------------------HHHHHHHHh---hheEEE-
Confidence 9876 56899999999 6777777663 567777765 578995
Q ss_pred CCCCChhcHHHHHHHhc
Q 013515 382 CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~ 398 (441)
+|..-+++-+.++.+
T Consensus 143 --iH~a~~~~f~~~~~~ 157 (198)
T COG2263 143 --IHKAGSRDFVEKFAA 157 (198)
T ss_pred --eeccccHHHHHHHHH
Confidence 677778888888874
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=133.49 Aligned_cols=90 Identities=32% Similarity=0.404 Sum_probs=74.5
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYS 312 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~~ 312 (441)
...+++.++++|||+|||+|..++.++... .+|+|+|+++.+++.+++|++.+|++|++++.+|+.+...... ...
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCC
Confidence 345567788999999999999999999863 5899999999999999999999999999999999976432110 014
Q ss_pred CccEEEEcCCCCCC
Q 013515 313 EVRAILLDPSCSGS 326 (441)
Q Consensus 313 ~fD~Il~DpPCSg~ 326 (441)
+||.|++|||++|.
T Consensus 362 ~~D~vi~dPPr~G~ 375 (431)
T TIGR00479 362 IPDVLLLDPPRKGC 375 (431)
T ss_pred CCCEEEECcCCCCC
Confidence 69999999998754
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-12 Score=121.57 Aligned_cols=127 Identities=16% Similarity=0.161 Sum_probs=94.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++|++.+|. +++++|+.+...... .++||.|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~-~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTAL-RGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhc-CCCEeEEEECC
Confidence 46899999999999999988754 36899999999999999999998773 678899876432211 15799999999
Q ss_pred CCCCCccccc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 322 SCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 322 PCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
||...+.+.+ .|+.+..+ ....+ ......++.++..|.++++ +|.+++.+..
T Consensus 162 Py~~~~~~~~~~~e~~~~e----------p~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHE----------PRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CCCCchhhhcCCHHHHhCC----------CHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9998876543 23322110 01111 2346678999999999887 7888887653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-12 Score=113.62 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=108.3
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
...+.++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++.+++ +++++.+|+.+..
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~- 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV- 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-
Confidence 3445777777777788999999999999999998762 3899999999999999999998886 6888999986643
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. ++||.|+++||+....-..+..+. ..............+..+|..+.++++ +|.+++++++..
T Consensus 80 -~---~~fD~Vi~n~p~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 80 -R---GKFDVILFNPPYLPLEDDLRRGDW-----------LDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred -C---CcccEEEECCCCCCCcchhcccch-----------hhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 1 579999999998533211000000 000000000123446788999988887 799988877654
Q ss_pred ChhcHHHHHHHhchhcCCCeEEec
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
++..+.++|+ +.+|+...
T Consensus 145 ---~~~~~~~~l~---~~gf~~~~ 162 (179)
T TIGR00537 145 ---GEPDTFDKLD---ERGFRYEI 162 (179)
T ss_pred ---ChHHHHHHHH---hCCCeEEE
Confidence 3555556663 34665533
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-13 Score=112.06 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
|.+|||+|||+|..+..+++.. ..+++++|+++..++.++.++...+. .+++++++|+.+...... ..+||.|+.|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-DGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-TT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-CceeEEEEEC
Confidence 6799999999999999999874 58999999999999999999999988 679999999988762211 2789999999
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
||+........ ...+....+++.+.++++ +|.+++.+|
T Consensus 78 pP~~~~~~~~~------------------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKA------------------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----------------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccch------------------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99865321110 011155688999999887 789988876
|
... |
| >PRK00202 nusB transcription antitermination protein NusB; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=111.56 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccc-cccc----ch
Q 013515 31 AYFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWK----RQ 104 (441)
Q Consensus 31 ~~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~-~~~~----~~ 104 (441)
...+|+.|+++|+++..++.+.+ .+..... ....+..|++|+++|||||+|++..||++|.+ +++ .++. ..
T Consensus 3 r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~--~l~~~~~~~l~~~~ 79 (137)
T PRK00202 3 RRKAREAAVQALYQWELSGNDIAEIIEAQLL-EEQYDKADPAYFRSLVRGVVENQAELDELISP--YLKDWTLERLDPVE 79 (137)
T ss_pred hHHHHHHHHHHHHHHHccCCCHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHH
Confidence 45689999999999988555543 3333211 12344578999999999999999999999997 563 3322 24
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 105 EELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 105 ~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+.+||+|+||++|++++|.++.++++|+..|.. -..+|.|.+++.
T Consensus 80 ~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~ 127 (137)
T PRK00202 80 RAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDK 127 (137)
T ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 789999999999996689999999999998742 123566665554
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=123.26 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=81.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.++..+.+.+|++|||+|||+|..+..+++.+++.++|+++|+++.|++.++++++..+..+|+++++|+.+++..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--- 114 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--- 114 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T---
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC---
Confidence 55666788999999999999999999999888777999999999999999999999999889999999999999765
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
++||.|++ +.|. ++-|| +.+.|+...+.++ ||.++..- ++.-+|.
T Consensus 115 ~sfD~v~~-----~fgl-rn~~d--------------------------~~~~l~E~~RVLkPGG~l~ile--~~~p~~~ 160 (233)
T PF01209_consen 115 NSFDAVTC-----SFGL-RNFPD--------------------------RERALREMYRVLKPGGRLVILE--FSKPRNP 160 (233)
T ss_dssp T-EEEEEE-----ES-G-GG-SS--------------------------HHHHHHHHHHHEEEEEEEEEEE--EEB-SSH
T ss_pred CceeEEEH-----HhhH-HhhCC--------------------------HHHHHHHHHHHcCCCeEEEEee--ccCCCCc
Confidence 78999973 3443 32222 1356888888887 67766533 3334453
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=130.41 Aligned_cols=91 Identities=26% Similarity=0.372 Sum_probs=64.0
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC----
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---- 308 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---- 308 (441)
+..++++.++ .|||++||.|.+|+.+|... .+|+|+|+++++++.|++|++.+|++|++++.+++.++....
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence 3455666666 89999999999999998763 689999999999999999999999999999988776543210
Q ss_pred ---------CCCCCccEEEEcCCCCCCc
Q 013515 309 ---------PAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 309 ---------~~~~~fD~Il~DpPCSg~G 327 (441)
.....+|.|++|||.+|.+
T Consensus 265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 0012689999999999876
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-12 Score=109.94 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHcc-------ChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcc-ccccc
Q 013515 32 YFARREAAKVLRLVLRG-------DARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASIL-NSKWK 102 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~-------~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l-~~~~~ 102 (441)
+++|+.|+++|++++.+ +.+.+ .+... ......+..|++|+++||+|+++++..||++|.+ ++ ++++.
T Consensus 1 ~~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~--~~~~~~~~ 77 (134)
T PF01029_consen 1 RKARELALQALYQVEFNDEEDEEEGQFLDEALEEE-LEESELSEEDRAFARELVYGVLRNKEELDALISK--LLKNWPLE 77 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSTSSTGG
T ss_pred ChHHHHHHHHHHHHHccCCchhhhhhhHHHHHhhc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCcc
Confidence 57999999999999432 22222 11101 1113456789999999999999999999999998 55 34433
Q ss_pred ----chHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHHH---HHHHHHHHHHc
Q 013515 103 ----RQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAI---QLALAQLLVRN 149 (441)
Q Consensus 103 ----~~~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~~ 149 (441)
..+.+|++|+||++|++++|.++.||++|+.+|... ..+|.|.+++.
T Consensus 78 rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~ 131 (134)
T PF01029_consen 78 RLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRR 131 (134)
T ss_dssp GSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHH
Confidence 347899999999999977999999999999987541 35566665553
|
Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B .... |
| >TIGR01951 nusB transcription antitermination factor NusB | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-12 Score=108.92 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccc-ccccc----hHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWKR----QEE 106 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~-~~~~~----~~~ 106 (441)
.+|..|+++|+++..++.+.+ ++...... ...+.+|++++++|||||+|++..||++|++ +++ .++.. .+.
T Consensus 3 ~~R~~a~~~l~~~~~~~~~~~~~l~~~~~~-~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~--~~~~~~~~~l~~~~~~ 79 (129)
T TIGR01951 3 KARELALQALYQWELSGNDVEEIIEEFLEE-RELDEEDREYFLELVRGVLENQEEIDELISP--HLKDWSLERLDPVDRA 79 (129)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHHHH
Confidence 479999999999988555444 33332211 2345678999999999999999999999998 563 33322 477
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+|++|+||++|++++|.++.+|++|+..|.. -..+|.|.++++
T Consensus 80 iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~ 125 (129)
T TIGR01951 80 ILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDK 125 (129)
T ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHH
Confidence 9999999999996689999999999998752 124566666654
|
A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. |
| >cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B) | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-12 Score=108.42 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccc-c----cchHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK-W----KRQEE 106 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~-~----~~~~~ 106 (441)
.+|..|+++|+++..++.+.+ .+..... ....+..|++++++||||++|++..||++|++ ++++. + ...+.
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~--~l~~~~~~~l~~~~~~ 79 (130)
T cd00619 3 RARELAVQALYAWELAPEILAEVVSLLEL-LQYKSKKVLPFALKLVRGVLENIEEIDELIEK--HLRNWSLDRLAIVERA 79 (130)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCCHHHhhHHHHH
Confidence 479999999999988655443 3332221 11234579999999999999999999999998 56532 1 12477
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+|++|+||++|++++|.++.+|++|+..|.. -..+|.|.++++
T Consensus 80 iLria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~ 125 (130)
T cd00619 80 ILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDK 125 (130)
T ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHH
Confidence 9999999999998789999999999998752 124566666554
|
NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=116.75 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=112.3
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~ 307 (441)
.+.|.+.+..+....+|||+|||.|..++.+|++..+ .+|+++|+++++.+.+++|++.+++ ++|+++++|+.++...
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 5788888888888999999999999999999998654 8999999999999999999999887 6899999999998865
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHH-----HHHHHHHHHhCCCC-CcEEEEEc
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA-----FQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~-----~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.. ..+||.|+++||.--.|.. .+++ .....+. .-..+++.|.++++ +|++.+.
T Consensus 111 ~~-~~~fD~Ii~NPPyf~~~~~-~~~~------------------~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V- 169 (248)
T COG4123 111 LV-FASFDLIICNPPYFKQGSR-LNEN------------------PLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV- 169 (248)
T ss_pred cc-ccccCEEEeCCCCCCCccc-cCcC------------------hhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-
Confidence 43 3579999999999887764 1211 1111111 23467888888888 7888653
Q ss_pred CCCCChhcHHHHHHHhc
Q 013515 382 CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~ 398 (441)
++.|.=.-+-..+.
T Consensus 170 ---~r~erl~ei~~~l~ 183 (248)
T COG4123 170 ---HRPERLAEIIELLK 183 (248)
T ss_pred ---ecHHHHHHHHHHHH
Confidence 66666555555553
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=115.61 Aligned_cols=98 Identities=24% Similarity=0.279 Sum_probs=83.8
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|....+..-...+...+++++|++|||+|||+|+.|..++..++..++|+++|+++++++.++++++.+|+.+|+++++|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44555655566677788899999999999999999999999887668999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEcC
Q 013515 301 FLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+....... ..||+|+++.
T Consensus 136 ~~~~~~~~---~~fD~I~~~~ 153 (212)
T PRK13942 136 GTLGYEEN---APYDRIYVTA 153 (212)
T ss_pred cccCCCcC---CCcCEEEECC
Confidence 87655432 6799999864
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=112.04 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=107.3
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|.-..|++.+.++...+++.++++|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++|+.+++++++|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 4557788888888889999999999999999999999998764 458999999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY 379 (441)
+....... ...+|.|++|.. . . ...++..+.+.++ ||.+++
T Consensus 99 ~~~~~~~~--~~~~d~v~~~~~----~----~----------------------------~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 99 APECLAQL--APAPDRVCIEGG----R----P----------------------------IKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred hHHHHhhC--CCCCCEEEEECC----c----C----------------------------HHHHHHHHHHhcCCCeEEEE
Confidence 86532111 134678877632 0 0 0356777777676 788888
Q ss_pred EcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 380 STCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 380 sTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.+++ .|.-..+.+.++.....++++..
T Consensus 141 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 167 (196)
T PRK07402 141 TASS---LEGLYAISEGLAQLQARNIEVVQ 167 (196)
T ss_pred Eeec---HHHHHHHHHHHHhcCCCCceEEE
Confidence 8775 22323344444433344565544
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=118.34 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=66.6
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.+++|++|||+|||||++|.+++..+++.+.|+|+|+++++++.+.+.++.. +||.++.+|+..........+.||+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCE
Confidence 44789999999999999999999999988899999999998887776665543 5888999998753210001257999
Q ss_pred EEEcCC
Q 013515 317 ILLDPS 322 (441)
Q Consensus 317 Il~DpP 322 (441)
|++|..
T Consensus 206 V~~Dva 211 (293)
T PTZ00146 206 IFADVA 211 (293)
T ss_pred EEEeCC
Confidence 999985
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=111.26 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=99.7
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
-..++....++...+++.++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++++++.+++++.+|+.
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 35566666777778888899999999999999999999874 45799999999999999999999999888999999874
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.. . . .+||+|+++..- +. . ..++..+.+.++ +|.++++.
T Consensus 92 ~~-~--~--~~~D~v~~~~~~---~~----------------------~----------~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 92 IE-L--P--GKADAIFIGGSG---GN----------------------L----------TAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hh-c--C--cCCCEEEECCCc---cC----------------------H----------HHHHHHHHHhcCCCeEEEEEE
Confidence 21 1 1 579999986320 10 0 245667777776 78887753
Q ss_pred CCCCChhcHHHHHHHhc
Q 013515 382 CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~ 398 (441)
. ..+|...+.++++
T Consensus 132 ~---~~~~~~~~~~~l~ 145 (187)
T PRK08287 132 I---LLENLHSALAHLE 145 (187)
T ss_pred e---cHhhHHHHHHHHH
Confidence 3 3466666667774
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-12 Score=127.19 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=71.2
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.++..++.+|||+|||+|..++.++.. ..+|+++|+++.+++.+++|++.+|+++++++++|+.++.... ..+||
T Consensus 228 ~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~--~~~~D 302 (374)
T TIGR02085 228 WVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ--MSAPE 302 (374)
T ss_pred HHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc--CCCCC
Confidence 344456789999999999999999864 3689999999999999999999999989999999997654322 14599
Q ss_pred EEEEcCCCCC
Q 013515 316 AILLDPSCSG 325 (441)
Q Consensus 316 ~Il~DpPCSg 325 (441)
.|++|||..|
T Consensus 303 ~vi~DPPr~G 312 (374)
T TIGR02085 303 LVLVNPPRRG 312 (374)
T ss_pred EEEECCCCCC
Confidence 9999999754
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=109.65 Aligned_cols=127 Identities=19% Similarity=0.182 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+|.+|||+|||+|..+..++.. .+.++|+++|+++.+++.++++++++|+++++++++|+.++.. .++||.|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEeh
Confidence 4889999999999999999865 4458999999999999999999999999889999999988642 2689999986
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhch
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPI 399 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~ 399 (441)
. .+- . ..++..+.++++ ||.++.. +....+..+....+.
T Consensus 117 ~----~~~----------------------~----------~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 117 A----LAS----------------------L----------NVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRK 156 (181)
T ss_pred h----hhC----------------------H----------HHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHh
Confidence 4 110 0 134555566666 7877754 455566666666665
Q ss_pred hcCCCeEEecCCC
Q 013515 400 AMSFGFQLATPFP 412 (441)
Q Consensus 400 ~~~~~~~~~~~~~ 412 (441)
+...+|+.++..+
T Consensus 157 ~~~~~~~~~~~~~ 169 (181)
T TIGR00138 157 CQVLGVEPLEVPP 169 (181)
T ss_pred hhhcCceEeeccc
Confidence 5567887766433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=117.92 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=93.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.++.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++|++.+|+ ++|.++++|+.+..+. .+||.|
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~----~~fD~I 193 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPG----RKYDLI 193 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCC----CCccEE
Confidence 34567999999999999999998753 47999999999999999999999998 4799999998653221 479999
Q ss_pred EEcCCCCCCccccccc-CccCCCCCCCCCCCcccHHH-H---HHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 318 LLDPSCSGSGTAAERL-DHLLPSHASGHTADPTEMER-L---NKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 318 l~DpPCSg~G~~~~~p-d~~~~~~~~~~~~~~~~~~~-~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++|||+...+.+..-+ +.. + .+.. + ......++.++..+.++++ ||.++..+.
T Consensus 194 v~NPPy~~~~~~~~l~~~~~---~---------ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYH---H---------EPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EECCCCCCccchhhCCHhhh---c---------CHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999998766542211 110 0 0111 0 1223567889999999887 688776544
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=109.05 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+.+.+|||+|||+|..+..++....+.++++++|+++.+++.+++++++++++|+++.++|+.+++...+ +.||.|+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~--~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE--EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS--TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC--CCeeEEEE
Confidence 4688999999999999999996656678999999999999999999999999999999999999653211 68999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
+.++.... .+..++..+.++++ +|.++.+.+. +..|.++.+.+.
T Consensus 80 ~~~l~~~~--------------------------------~~~~~l~~~~~~lk~~G~~i~~~~~-~~~~~~~~~~~~ 124 (152)
T PF13847_consen 80 NGVLHHFP--------------------------------DPEKVLKNIIRLLKPGGILIISDPN-HNDELPEQLEEL 124 (152)
T ss_dssp ESTGGGTS--------------------------------HHHHHHHHHHHHEEEEEEEEEEEEE-HSHHHHHHHHHH
T ss_pred cCchhhcc--------------------------------CHHHHHHHHHHHcCCCcEEEEEECC-hHHHHHHHHHHH
Confidence 97761111 11356778888777 6777666665 455555554443
|
... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-11 Score=112.92 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=71.0
Q ss_pred hhHHHHHH--hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 229 ASSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 229 ss~l~~~~--l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
++.++..+ +.+++|++|||+|||+|..+.+++..++ .++|+|+|+++.|++.+.++++.. .||.++.+|+.....
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~ 134 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPER 134 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcch
Confidence 44444444 7888999999999999999999999875 689999999999999888887654 688999999875311
Q ss_pred CCCCCCCccEEEEcCC
Q 013515 307 KDPAYSEVRAILLDPS 322 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpP 322 (441)
.....++||+|+.|.+
T Consensus 135 ~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 135 YAHVVEKVDVIYQDVA 150 (226)
T ss_pred hhhccccCCEEEECCC
Confidence 1101156999998754
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-11 Score=111.06 Aligned_cols=90 Identities=26% Similarity=0.371 Sum_probs=77.3
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 308 (441)
...+...+++.+|++|||+|||+|..+..+++.++..++|+++|+++++++.++++++++|+. +++++++|+.+..+..
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 345556778889999999999999999999998866689999999999999999999999985 5899999998755432
Q ss_pred CCCCCccEEEEcCC
Q 013515 309 PAYSEVRAILLDPS 322 (441)
Q Consensus 309 ~~~~~fD~Il~DpP 322 (441)
.+||+|+++..
T Consensus 141 ---~~fD~Ii~~~~ 151 (205)
T PRK13944 141 ---APFDAIIVTAA 151 (205)
T ss_pred ---CCccEEEEccC
Confidence 68999999865
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=110.37 Aligned_cols=150 Identities=14% Similarity=0.202 Sum_probs=101.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.+.+|||+|||+|..+..++...+ ...++++|+++.+++.++++++..|++++.++++|+.+... .++||.|++|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEEC
Confidence 356999999999999999998754 46999999999999999999999999889999999976332 1679999999
Q ss_pred CCCCCCcccccc-cCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHH
Q 013515 321 PSCSGSGTAAER-LDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKS 395 (441)
Q Consensus 321 pPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~ 395 (441)
||+...+....- ++.+. + . ....+ ..-......++..+.++++ ||.+++. ++. .....+.+
T Consensus 162 pPy~~~~~~~~~~~~~~~--~------e--~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~-~~~---~~~~~~~~ 227 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRF--H------E--PRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE-IGY---DQGEAVRA 227 (251)
T ss_pred CCCCchhhhhhcChhhhh--c------C--CHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE-ECc---cHHHHHHH
Confidence 999877654210 11100 0 0 00000 0112334578888988877 6887775 332 22344555
Q ss_pred HhchhcCCCeEEecCCC
Q 013515 396 VLPIAMSFGFQLATPFP 412 (441)
Q Consensus 396 ~l~~~~~~~~~~~~~~~ 412 (441)
+++ +.+|+.+....
T Consensus 228 ~l~---~~gf~~v~~~~ 241 (251)
T TIGR03534 228 LFE---AAGFADVETRK 241 (251)
T ss_pred HHH---hCCCCceEEEe
Confidence 553 34565444333
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=113.84 Aligned_cols=136 Identities=18% Similarity=0.083 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC-CCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..++.++.++++|+ ..++...+ .+.||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~-~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP-DGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-ccccceEEE
Confidence 57899999999999999999875 3478999999999999999999999988999999999 65541111 157999998
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~ 398 (441)
..|.... ..+. + . -...+..+|..+.+.++ +|.++++|+ |+..+.++++
T Consensus 118 ~~~~p~~----~~~~-----~----------~-----~~~~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~ 167 (202)
T PRK00121 118 NFPDPWP----KKRH-----H----------K-----RRLVQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLE 167 (202)
T ss_pred ECCCCCC----Cccc-----c----------c-----cccCCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHH
Confidence 7652100 0000 0 0 00124678888888877 688887764 6777877877
Q ss_pred hhcCCCeEEe
Q 013515 399 IAMSFGFQLA 408 (441)
Q Consensus 399 ~~~~~~~~~~ 408 (441)
.....+|.+.
T Consensus 168 ~~~~~g~~~~ 177 (202)
T PRK00121 168 VLSAEGGFLV 177 (202)
T ss_pred HHHhCccccc
Confidence 6666677654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=118.71 Aligned_cols=153 Identities=21% Similarity=0.259 Sum_probs=118.9
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~ 306 (441)
+-|...+.+..+++|+.|||=+||||++.....- + +.+++++|++.+|++-++.|++.+|+....+... |+.+++.
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 4577888888999999999999999998887654 3 3799999999999999999999999988777776 9999985
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
.. .+||.|+.|||.--+-.. ....+..+..++|+.+.+.++ ||++|+.+=-
T Consensus 261 ~~---~~vdaIatDPPYGrst~~-----------------------~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-- 312 (347)
T COG1041 261 RD---NSVDAIATDPPYGRSTKI-----------------------KGEGLDELYEEALESASEVLKPGGRIVFAAPR-- 312 (347)
T ss_pred CC---CccceEEecCCCCccccc-----------------------ccccHHHHHHHHHHHHHHHhhcCcEEEEecCC--
Confidence 43 469999999997432211 112377888999999999887 6899997541
Q ss_pred ChhcHHHHHHHhchhcCCCeEEecCCCCCCCcccc
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ 420 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~ 420 (441)
.........+|++...++.|.++..+
T Consensus 313 ---------~~~~~~~~~~f~v~~~~~~~~H~sLt 338 (347)
T COG1041 313 ---------DPRHELEELGFKVLGRFTMRVHGSLT 338 (347)
T ss_pred ---------cchhhHhhcCceEEEEEEEeecCceE
Confidence 11111235689888888888776544
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=115.80 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.+|+. +|+++++|+.+..+. .+||.|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~----~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPG----RRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCC----CCccEEEEC
Confidence 3689999999999999999875 3479999999999999999999999984 699999998653321 479999999
Q ss_pred CCCCCCcccccc-cCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 321 PSCSGSGTAAER-LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 321 pPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
||+.+.+.+..- ++.. +....-.. -. ..-....+.++..+.++++ ||.+++.
T Consensus 209 PPyi~~~~~~~l~~~~~---~eP~~AL~-gg----~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYR---HEPELALA-AG----DDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhc---cCccceee-CC----CchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999887654221 1110 00000000 00 0122566789999999887 6777764
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=111.57 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=105.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.....++.++++|+..... .++||.|
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~I 179 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLI 179 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEE
Confidence 45678899999999999999999886 357999999999999999999983344679999999865332 1579999
Q ss_pred EEcCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 318 LLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 318 l~DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
++||||...+.+.. .++.+..+ ....+ ......+..++..+.++++ ||.++..+ .. . ....
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~e----------p~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~--~-~~~~ 245 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHE----------PHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY--D-QGEA 245 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcC----------CchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc--h-HHHH
Confidence 99999988765431 12221000 00011 1234577889999999887 68777643 22 2 2234
Q ss_pred HHHHhchhcCCCeEEecCCCCCC
Q 013515 393 IKSVLPIAMSFGFQLATPFPNGT 415 (441)
Q Consensus 393 V~~~l~~~~~~~~~~~~~~~~~~ 415 (441)
+..++. ..+|..+...+++.
T Consensus 246 ~~~~l~---~~gf~~v~~~~d~~ 265 (275)
T PRK09328 246 VRALLA---AAGFADVETRKDLA 265 (275)
T ss_pred HHHHHH---hCCCceeEEecCCC
Confidence 555653 34565444344444
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=122.88 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC------------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP------------ 309 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~------------ 309 (441)
+.+|||+|||+|.+++.++... .+|+++|+++.+++.+++|++.+|++|++++++|+.++.....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 5899999999999999999999999999999999976432100
Q ss_pred -CCCCccEEEEcCCCCCC
Q 013515 310 -AYSEVRAILLDPSCSGS 326 (441)
Q Consensus 310 -~~~~fD~Il~DpPCSg~ 326 (441)
...+||.|++|||.+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 01258999999997653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=121.51 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-C-------C---
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-P-------A--- 310 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~-------~--- 310 (441)
+++|||+|||+|.+++.++... .+|+++|+++++++.+++|++.+|++|++++.+|+.++.... . .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3479999999999999998863 589999999999999999999999999999999987754210 0 0
Q ss_pred --CCCccEEEEcCCCCCC
Q 013515 311 --YSEVRAILLDPSCSGS 326 (441)
Q Consensus 311 --~~~fD~Il~DpPCSg~ 326 (441)
...||.|++|||.+|.
T Consensus 275 ~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred cccCCCCEEEECCCCCCC
Confidence 0237999999997654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=112.59 Aligned_cols=101 Identities=25% Similarity=0.323 Sum_probs=81.2
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|..+.|-.--..+.++|+++||++|||+|||+|+.|..++.+++..+.|+++|+++..++.++++++.+|..||.++++|
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 45555555555666788999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCS 324 (441)
.....+. ...||+|++.+.|.
T Consensus 132 g~~g~~~---~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 132 GSEGWPE---EAPFDRIIVTAAVP 152 (209)
T ss_dssp GGGTTGG---G-SEEEEEESSBBS
T ss_pred hhhcccc---CCCcCEEEEeeccc
Confidence 8765433 26899999987763
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=109.79 Aligned_cols=87 Identities=17% Similarity=0.362 Sum_probs=75.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..+...+.+++|++|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..+.+++.++++|+..++...
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-- 112 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD-- 112 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC--
Confidence 445567788899999999999999999999987667899999999999999999999888889999999998876433
Q ss_pred CCCccEEEEc
Q 013515 311 YSEVRAILLD 320 (441)
Q Consensus 311 ~~~fD~Il~D 320 (441)
++||.|+++
T Consensus 113 -~~fD~V~~~ 121 (231)
T TIGR02752 113 -NSFDYVTIG 121 (231)
T ss_pred -CCccEEEEe
Confidence 689999875
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=96.95 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=87.5
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
+...+.+.++++|||+|||+|..+..+++..++ ++|+++|+++.+++.++++++.++..+++++.+|+........ .
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL--P 87 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc--C
Confidence 445567778899999999999999999988644 7999999999999999999999998889999999875432222 5
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+||.|+++.+ . . .+.++++.+.++++ +|.++.+.
T Consensus 88 ~~D~v~~~~~------~----------------------~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGS------G----------------------G-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCc------c----------------------h-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 7999998542 0 0 01378889999887 68877653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=112.58 Aligned_cols=154 Identities=11% Similarity=0.151 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+|||+|||+|..++.++.... ..+|+|+|+++.+++.+++|++++|+. ++.++.+|+.+.... .+||.|++|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~----~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG----QKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC----CCccEEEEC
Confidence 36999999999999999998753 469999999999999999999999985 499999998753211 379999999
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
||+-........++... +. ....+ ..-....+.++..+.++++ ||.+++.++. . ....|..+
T Consensus 190 PPyi~~~~~~~~~~~~~--~e--------P~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~---~-q~~~~~~~ 255 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVR--FE--------PLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN---W-QQKSLKEL 255 (284)
T ss_pred CCCCCcchhhcCCcccc--cC--------cHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc---c-HHHHHHHH
Confidence 99976543221111110 00 00001 0123477889999999887 7888887654 2 22344444
Q ss_pred hchhcCCCeEEecCCCCCCC
Q 013515 397 LPIAMSFGFQLATPFPNGTA 416 (441)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~ 416 (441)
+.. ..+|..+...++..+
T Consensus 256 ~~~--~~~~~~~~~~~D~~g 273 (284)
T TIGR00536 256 LRI--KFTWYDVENGRDLNG 273 (284)
T ss_pred HHh--cCCCceeEEecCCCC
Confidence 421 235654444555433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-11 Score=107.53 Aligned_cols=98 Identities=23% Similarity=0.326 Sum_probs=87.0
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
.|..+.|-.--..+.++|++++|++||++|||+|+.|..||++. ++|+++|+.++-.+.+++|++.+|+.||.++++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 67777776667778889999999999999999999999999996 499999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCC
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|...--+.. ..||+|++.+-+
T Consensus 128 DG~~G~~~~---aPyD~I~Vtaaa 148 (209)
T COG2518 128 DGSKGWPEE---APYDRIIVTAAA 148 (209)
T ss_pred CcccCCCCC---CCcCEEEEeecc
Confidence 998765443 789999987764
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=116.84 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=111.1
Q ss_pred ccccchhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 013515 223 VFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~ 301 (441)
++.......++..+++ ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++.+|. ++.++++|+
T Consensus 232 LIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl 309 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW 309 (423)
T ss_pred cCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch
Confidence 3333444445544443 3467799999999999999888764 357999999999999999999999886 799999998
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCcccccc-cCccCCCCCCCCCCCcccH-HHH---HHHHHHHHHHHHHHhCCCC-Cc
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGSGTAAER-LDHLLPSHASGHTADPTEM-ERL---NKLSAFQKKALRHALSFPG-VE 375 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~-~~~---~~l~~~Q~~lL~~a~~~~~-~G 375 (441)
.+..... .++||.|++|||....+-.... ++.+ + .+ ..+ ..--...+.++..+.+.++ +|
T Consensus 310 ~e~~l~~--~~~FDLIVSNPPYI~~~e~~l~~~~v~---~---------EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG 375 (423)
T PRK14966 310 FDTDMPS--EGKWDIIVSNPPYIENGDKHLLQGDLR---F---------EPQIALTDFSDGLSCIRTLAQGAPDRLAEGG 375 (423)
T ss_pred hcccccc--CCCccEEEECCCCCCcchhhhcchhhh---c---------CHHHHhhCCCchHHHHHHHHHHHHHhcCCCc
Confidence 6543211 1579999999998765532110 1110 0 01 001 1222356788888888877 67
Q ss_pred EEEEEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCCCCc
Q 013515 376 RVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAE 417 (441)
Q Consensus 376 ~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~ 417 (441)
.+++.. .....+.|.++++ ..+|..++..+++.+.
T Consensus 376 ~lilEi----G~~Q~e~V~~ll~---~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 376 FLLLEH----GFDQGAAVRGVLA---ENGFSGVETLPDLAGL 410 (423)
T ss_pred EEEEEE----CccHHHHHHHHHH---HCCCcEEEEEEcCCCC
Confidence 766432 2233445555653 2456655555666554
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.9e-11 Score=108.10 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..++.++.. ...+|+++|+++..++.+++|++.+|+.++.++++|+....... ...||.|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~--~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP--GTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--CCCceEEEE
Confidence 56889999999999999865443 24799999999999999999999999989999999987644221 146999999
Q ss_pred cCCC
Q 013515 320 DPSC 323 (441)
Q Consensus 320 DpPC 323 (441)
|||.
T Consensus 128 DPPy 131 (199)
T PRK10909 128 DPPF 131 (199)
T ss_pred CCCC
Confidence 9994
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=105.14 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+|.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++.+|+++++++++|+.++.. . ++||.|+++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~---~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-E---EKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-C---CCccEEEEc
Confidence 48999999999999999998864 458999999999999999999999999889999999988765 2 689999975
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
. .+ + . ..++..+.+.++ ||.++..-...
T Consensus 120 ~----~~----~------------------~----------~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 120 A----VA----S------------------L----------SDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred c----cc----C------------------H----------HHHHHHHHHhcCCCeEEEEEeCCC
Confidence 2 11 0 0 246777778777 78888775553
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=119.55 Aligned_cols=114 Identities=27% Similarity=0.333 Sum_probs=89.6
Q ss_pred hHHHHHHhCCC-CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~-~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
+.+++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+|++++++.++|+..+....
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~ 123 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEE 123 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhc
Confidence 33444444433 457999999999999999988753 3589999999999999999999999988889999997654321
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
..||+|++||| |++ ...|+.|+..++.|.++|.|||
T Consensus 124 ---~~fD~V~lDP~--Gs~----------------------------------~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 124 ---RKFDVVDIDPF--GSP----------------------------------APFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred ---CCCCEEEECCC--CCc----------------------------------HHHHHHHHHHhcCCCEEEEEec
Confidence 56999999998 443 1456777776677888888876
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=106.49 Aligned_cols=97 Identities=27% Similarity=0.319 Sum_probs=79.6
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|..+.+......+..++.++++++|||+|||+|..+..++.+. ++|+++|+++.+++.++++++++|+.++.+..+|
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 3344444445566677888999999999999999999888774 4899999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+...... .++||.|+++.+|
T Consensus 135 ~~~~~~~---~~~fD~I~~~~~~ 154 (212)
T PRK00312 135 GWKGWPA---YAPFDRILVTAAA 154 (212)
T ss_pred cccCCCc---CCCcCEEEEccCc
Confidence 8654332 2679999999865
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-10 Score=111.63 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=75.2
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.....+++++|++|||+|||+|..+..+++..+..+.|+++|+++++++.++++++.+|++++.++++|+.......
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--- 147 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--- 147 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc---
Confidence 34445678899999999999999999999987655789999999999999999999999999999999987665433
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
..||+|+++..
T Consensus 148 ~~fD~Ii~~~g 158 (322)
T PRK13943 148 APYDVIFVTVG 158 (322)
T ss_pred CCccEEEECCc
Confidence 57999998743
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-10 Score=102.96 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=103.1
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPK 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~--v~~~~~D~~~~~~~ 307 (441)
+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...+..+ +.++++|..+....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 88 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG 88 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc
Confidence 455555666678999999999999999999887 3799999999999999999999988865 88889998663321
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ 386 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~ 386 (441)
..||.|+++||+...+- +..+... +. .....-.........++..+.++++ +|.+++..++...
T Consensus 89 ----~~~d~vi~n~p~~~~~~-----~~~~~~~-----~~-~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~ 153 (188)
T PRK14968 89 ----DKFDVILFNPPYLPTEE-----EEEWDDW-----LN-YALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG 153 (188)
T ss_pred ----cCceEEEECCCcCCCCc-----hhhhhhh-----hh-hhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC
Confidence 47999999999854331 1111000 00 0000000112345678888888887 6877777666543
Q ss_pred hhcHHHHHHHhchhcCCCeEEe
Q 013515 387 VENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 387 ~ENe~vV~~~l~~~~~~~~~~~ 408 (441)
. +. +..+++ ..+|++.
T Consensus 154 ~--~~-l~~~~~---~~g~~~~ 169 (188)
T PRK14968 154 E--DE-VLEYLE---KLGFEAE 169 (188)
T ss_pred H--HH-HHHHHH---HCCCeee
Confidence 2 33 334443 3466553
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-11 Score=108.23 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+.+|||+|||+|..+..++... +...|+++|+++.+++.+++++++.|++|+.++++|+.++.......+.+|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 346699999999999999999875 4579999999999999999999999999999999999875422111247999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+.|.- |++.. ..+.+ -.+..++..+.+.|+ ||.+..+|
T Consensus 94 ~~pdp------------w~k~~-------h~~~r-----~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPDP------------WPKKR-------HNKRR-----ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCCc------------CCCCC-------ccccc-----cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 98721 11000 00000 114577888888777 67776655
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-10 Score=108.67 Aligned_cols=117 Identities=25% Similarity=0.312 Sum_probs=88.5
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEeccCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~---~g~~~v~~~~~D~~~~~~~~ 308 (441)
++...+.+.++++|||+|||+|..+..+++..++.++|+|+|++++|++.++++... .+.+++.++++|+.+++..+
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 445567788899999999999999999988876668999999999999999877642 23468999999999887654
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
++||.|++. .+ +..-+| ...+|..+.+.++ ||.++.++.+
T Consensus 144 ---~sfD~V~~~-----~~-l~~~~d--------------------------~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 144 ---CYFDAITMG-----YG-LRNVVD--------------------------RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred ---CCEeEEEEe-----cc-cccCCC--------------------------HHHHHHHHHHHcCcCcEEEEEECC
Confidence 689999842 11 211111 1367888888777 7888776554
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-10 Score=102.82 Aligned_cols=132 Identities=23% Similarity=0.314 Sum_probs=92.8
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCc--------EEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG--------KIVACELNKERVRRLKDTIKLSGAA-NI 294 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~--------~V~a~D~~~~rl~~l~~~~~~~g~~-~v 294 (441)
.++..-+..++.+.++++|+.|||-+||+|+..+..+.+..+.. .++++|+++++++.+++|++..|+. .|
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 34444566677788889999999999999999988877654433 3899999999999999999999984 58
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 374 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~ 374 (441)
.+...|+.+++... +.+|.|+.|||. |. | ...-..+..+..++++.+.+.+++
T Consensus 91 ~~~~~D~~~l~~~~---~~~d~IvtnPPy---G~--r-------------------~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 91 DFIQWDARELPLPD---GSVDAIVTNPPY---GR--R-------------------LGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEE--GGGGGGTT---SBSCEEEEE--S---TT--S-------------------HCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEEecchhhccccc---CCCCEEEECcch---hh--h-------------------ccCHHHHHHHHHHHHHHHHHHCCC
Confidence 89999999998332 689999999995 21 0 112234577888999999887776
Q ss_pred cEEEEEcCC
Q 013515 375 ERVVYSTCS 383 (441)
Q Consensus 375 G~lvYsTCS 383 (441)
..|+.|++
T Consensus 144 -~~v~l~~~ 151 (179)
T PF01170_consen 144 -RAVFLTTS 151 (179)
T ss_dssp -CEEEEEES
T ss_pred -CEEEEEEC
Confidence 55555554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-10 Score=104.99 Aligned_cols=129 Identities=23% Similarity=0.278 Sum_probs=104.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC-----cEEEEEeCCHHHHHHHHHHHHHhCC-C--cEEEEeccCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLSGA-A--NIEVLHGDFLN 303 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~-----~~V~a~D~~~~rl~~l~~~~~~~g~-~--~v~~~~~D~~~ 303 (441)
+.+.-|+|..|.+|||+|+|+|..|+-+...+... ++|+.+|+++.||..++++.++.++ + .+.++++|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 34456788899999999999999999999988653 8999999999999999999988776 2 38999999999
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++..+ .+||...+ +.| +|+-+|+ .+.|+.|++.|| ||++ + |
T Consensus 171 LpFdd---~s~D~yTi-----afG-IRN~th~--------------------------~k~l~EAYRVLKpGGrf-~--c 212 (296)
T KOG1540|consen 171 LPFDD---DSFDAYTI-----AFG-IRNVTHI--------------------------QKALREAYRVLKPGGRF-S--C 212 (296)
T ss_pred CCCCC---CcceeEEE-----ecc-eecCCCH--------------------------HHHHHHHHHhcCCCcEE-E--E
Confidence 99776 67898854 444 4544443 367899999988 4544 3 8
Q ss_pred CCCChhcHHHHHHHhc
Q 013515 383 SIHQVENEDVIKSVLP 398 (441)
Q Consensus 383 S~~~~ENe~vV~~~l~ 398 (441)
--++.+|.+.+.+|.+
T Consensus 213 LeFskv~~~~l~~fy~ 228 (296)
T KOG1540|consen 213 LEFSKVENEPLKWFYD 228 (296)
T ss_pred EEccccccHHHHHHHH
Confidence 8899999888888874
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-10 Score=112.48 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=93.6
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLN 303 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---~~v~~~~~D~~~ 303 (441)
|.++.+....+....+++|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.++. .+++++..|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 6788888888876667799999999999999999874 458999999999999999999998874 368888888754
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
... ..+||.|+++||.--...+ +.. .-.+++..+.+.++ ||.+....
T Consensus 293 ~~~----~~~fDlIlsNPPfh~~~~~--------------------~~~-------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 GVE----PFRFNAVLCNPPFHQQHAL--------------------TDN-------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCC----CCCEEEEEECcCcccCccC--------------------CHH-------HHHHHHHHHHHhcccCCEEEEEE
Confidence 321 1579999999996321100 111 12467888888877 67665553
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=106.58 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=111.4
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~ 307 (441)
...++.+.|++.||.+|++.|.|+|+.+..+++.+++.|+++.+|.+..|.+.+.+.++..|+ +|+++.+.|+......
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 455888899999999999999999999999999999999999999999999999999999998 7899999999876654
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC--CcEE-EEEcCCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG--VERV-VYSTCSI 384 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~--~G~l-vYsTCS~ 384 (441)
.. ...+|.|++|.| .| | ..+-+|++.++ ||++ -+|-|-
T Consensus 173 ~k-s~~aDaVFLDlP---------aP---------------w-------------~AiPha~~~lk~~g~r~csFSPCI- 213 (314)
T KOG2915|consen 173 IK-SLKADAVFLDLP---------AP---------------W-------------EAIPHAAKILKDEGGRLCSFSPCI- 213 (314)
T ss_pred cc-ccccceEEEcCC---------Ch---------------h-------------hhhhhhHHHhhhcCceEEeccHHH-
Confidence 32 267999999999 22 1 34566767665 4444 345553
Q ss_pred CChhcHHHHHHHhchhcCCCeEEecCCCCCC
Q 013515 385 HQVENEDVIKSVLPIAMSFGFQLATPFPNGT 415 (441)
Q Consensus 385 ~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~ 415 (441)
++|++-++.....+|.-+..+..|.
T Consensus 214 ------EQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 214 ------EQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred ------HHHHHHHHHHHhCCCceEEEEEeeh
Confidence 6677777655566775555555554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-10 Score=107.82 Aligned_cols=111 Identities=22% Similarity=0.268 Sum_probs=88.0
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+..+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++.+..|+.+++++.+|+..++..+ +.||
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD 148 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVD 148 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---Ccee
Confidence 3457789999999999999888888887777899999999999999999999999989999999998876543 5799
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.|+.+.- +...|| . ..+++.+++.++ ||+++.+.
T Consensus 149 ~Vi~~~v------~~~~~d----------------~----------~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 149 VIISNCV------INLSPD----------------K----------ERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEEcCc------ccCCCC----------------H----------HHHHHHHHHHcCCCcEEEEEE
Confidence 9997632 111111 1 357888888887 78877753
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.6e-10 Score=101.54 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=78.8
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCC
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPA 310 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-----~~~ 310 (441)
+..+.+|++|||+|||+|+.+..++....+.++|+++|+++.+ +..++.++++|+.+.... ...
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 4456789999999999999999999887666799999999864 234678888898764310 001
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
.++||+|++|+++...|... ...... ...+..+|..+.++++ ||.++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~--------------------~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWD--------------------IDHLRS-IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCcc--------------------ccHHHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 25799999997654444321 111111 2346788999999877 6777764
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-10 Score=111.74 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=98.4
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.++.+....+.....++|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++.+++. .+++..|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~- 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI- 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc-
Confidence 6678888887776666799999999999999999874 4478999999999999999999999875 467778875422
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
.++||.|+++||-- .|.- .+. ..-..++..+.+.|+ ||.++..+++..
T Consensus 259 ----~~~fDlIvsNPPFH-~g~~-------------------~~~-------~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 259 ----KGRFDMIISNPPFH-DGIQ-------------------TSL-------DAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred ----CCCccEEEECCCcc-CCcc-------------------ccH-------HHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 16799999999941 1110 001 112467888888777 799988888888
Q ss_pred Chhc
Q 013515 386 QVEN 389 (441)
Q Consensus 386 ~~EN 389 (441)
|.|.
T Consensus 308 ~y~~ 311 (342)
T PRK09489 308 PYPD 311 (342)
T ss_pred ChHH
Confidence 7663
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-10 Score=106.47 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=79.1
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.+|.+...-|....+.+|||+|||.|..++.+++.. +..+|+.+|++..+++.+++|++.+++++..+...|...-.
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 7899999999998888899999999999999999985 46899999999999999999999999988656666654322
Q ss_pred CCCCCCCccEEEEcCCC
Q 013515 307 KDPAYSEVRAILLDPSC 323 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPC 323 (441)
.++||.|+++||-
T Consensus 222 ----~~kfd~IisNPPf 234 (300)
T COG2813 222 ----EGKFDLIISNPPF 234 (300)
T ss_pred ----cccccEEEeCCCc
Confidence 1579999999994
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=115.70 Aligned_cols=103 Identities=22% Similarity=0.324 Sum_probs=84.6
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
-+|||++||+|..++.++....+..+|+++|+++..++.+++|++.+++.+++++++|+..+..... ..||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~--~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN--RKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC--CCCCEEEeCCC
Confidence 4899999999999999988754557999999999999999999999999889999999987754321 56999999997
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
|+. ...|+.|++.++.|.++|.|||
T Consensus 124 --Gs~----------------------------------~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 --GTP----------------------------------APFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --CCc----------------------------------HHHHHHHHHhcccCCEEEEEec
Confidence 321 1457788877776667777876
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=96.54 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcc-ChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc-----cchHH
Q 013515 34 ARREAAKVLRLVLRG-DARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW-----KRQEE 106 (441)
Q Consensus 34 ~R~~A~~vL~~v~~~-~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~-----~~~~~ 106 (441)
+|+.|+++|+++..+ +...+ .+..... ......|++++++|||||+|++..||++|++ ++++++ +..+.
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~--~~~~~~~~r~~~~~~~ 77 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSALEK--LQLAKKDRPFALELVYGVLRNLPELDDIISP--LLKKWLLDRLDKVDRA 77 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHH--cccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCChhhhhHHHHH
Confidence 699999999999875 44433 3332221 1233478999999999999999999999998 555432 23466
Q ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHhhHHH---HHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQ-EISLVGDAEKFLMLHKGAI---QLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~-~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~~ 149 (441)
+++++.|++++.. ++|+++.++++|+..|... ...|.|.++++
T Consensus 78 il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~ 124 (129)
T cd00447 78 ILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRR 124 (129)
T ss_pred HHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 7777777777665 5899999999999987532 23466655553
|
This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=108.09 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=84.5
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~ 301 (441)
..+.....++...++...++.+|||+|+++|+.|++++..+++.|+|+++|.++++++.+++++++.|+. +|+++.+|+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 4455666777777888888899999999999999999998877889999999999999999999999995 799999999
Q ss_pred CCCCCCC---CCCCCccEEEEcCC
Q 013515 302 LNLDPKD---PAYSEVRAILLDPS 322 (441)
Q Consensus 302 ~~~~~~~---~~~~~fD~Il~DpP 322 (441)
.+..+.. ...++||.|++|++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCC
Confidence 7754321 11257999999998
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=103.21 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+.|+|+|||.||-|+++|... .+|+|+|+++.+++.+++|++-+|+ ++|.++++|+.++.........||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 379999999999999999873 5899999999999999999999997 689999999988764321101289999999
Q ss_pred CCCCCccc
Q 013515 322 SCSGSGTA 329 (441)
Q Consensus 322 PCSg~G~~ 329 (441)
|=.|-.-.
T Consensus 78 PWGGp~Y~ 85 (163)
T PF09445_consen 78 PWGGPSYS 85 (163)
T ss_dssp -BSSGGGG
T ss_pred CCCCcccc
Confidence 97665443
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.9e-10 Score=104.31 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=78.8
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
...++...++...++.+|||+|||+|..++.++..+++.++|+++|+++++++.+++|+++.|+ ++|+++.+|+.+..+
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 3455666667777788999999999999999999887789999999999999999999999998 469999999987532
Q ss_pred CC---CCCCCccEEEEcCC
Q 013515 307 KD---PAYSEVRAILLDPS 322 (441)
Q Consensus 307 ~~---~~~~~fD~Il~DpP 322 (441)
.. ...++||.|++|++
T Consensus 135 ~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHhCCCCCCCCEEEECCC
Confidence 11 01257999999987
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=107.77 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.++++|||+|||+|+.+..+++.. ..+|+++|+++.+++.++++++..|+ +++++.++|+.+++..+ ++||.|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~---~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED---GQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC---CCccEEE
Confidence 678999999999999999999875 36999999999999999999998887 57999999998877554 6899998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 192 s 192 (340)
T PLN02244 192 S 192 (340)
T ss_pred E
Confidence 5
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=99.52 Aligned_cols=139 Identities=21% Similarity=0.216 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC------CCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP------KDPAYS 312 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~------~~~~~~ 312 (441)
.++|.+|||+|||||..+..+++..++.+.|+|+|+++ + .+..+++++++|+.+... ... .+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~-~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVG-DS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhC-CC
Confidence 36789999999999999999999987778999999998 1 234578999999987530 011 26
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
+||.|+.|+...-+|. | . .+......+...+|..+.++++ ||.++..+ +..+...
T Consensus 117 ~~D~V~S~~~~~~~g~----~----------------~-~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~~ 172 (209)
T PRK11188 117 KVQVVMSDMAPNMSGT----P----------------A-VDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGFD 172 (209)
T ss_pred CCCEEecCCCCccCCC----h----------------H-HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCHH
Confidence 7999999862111221 0 0 1111112224578999999887 67776542 3334433
Q ss_pred HHHHHhchhcCCCeEEecCCCCCCCc
Q 013515 392 VIKSVLPIAMSFGFQLATPFPNGTAE 417 (441)
Q Consensus 392 vV~~~l~~~~~~~~~~~~~~~~~~~~ 417 (441)
.+...+ ...|+.++..++-..+
T Consensus 173 ~~l~~l----~~~f~~v~~~Kp~ssr 194 (209)
T PRK11188 173 EYLREI----RSLFTKVKVRKPDSSR 194 (209)
T ss_pred HHHHHH----HhCceEEEEECCcccc
Confidence 333333 2345555544444333
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=108.74 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=94.8
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..+....+..+||+|||+|..++++|... +...++|+|+++.+++.+.+++...|++||.++++|+..+....+ .+++
T Consensus 116 ~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~-~~s~ 193 (390)
T PRK14121 116 DFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP-SNSV 193 (390)
T ss_pred HHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-CCce
Confidence 34455667899999999999999999986 558999999999999999999999999999999999976532221 2689
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
|.|++.-|+- |++ .+. .++ .|..+|..+.+.|+ ||.+...|.+.
T Consensus 194 D~I~lnFPdP------------W~K----------krH--RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 194 EKIFVHFPVP------------WDK----------KPH--RRV--ISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred eEEEEeCCCC------------ccc----------cch--hhc--cHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9999877642 211 011 111 36788999999887 78999888863
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=112.22 Aligned_cols=154 Identities=10% Similarity=0.193 Sum_probs=100.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+|+ +++.++.+|+..... .++||.|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~----~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE----KQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc----CCCccEEEE
Confidence 457899999999999999988754 47999999999999999999999987 468999999764322 157999999
Q ss_pred cCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHH
Q 013515 320 DPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIK 394 (441)
Q Consensus 320 DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~ 394 (441)
|||.....-... .++.. .+. -...+ ..-....+.++..+.++|+ +|.++.. +.. . ..+.|.
T Consensus 213 NPPYi~~~~~~~l~~~v~--~~E--------P~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~--~-q~~~v~ 278 (506)
T PRK01544 213 NPPYISHSEKSEMAIETI--NYE--------PSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF--K-QEEAVT 278 (506)
T ss_pred CCCCCCchhhhhcCchhh--ccC--------cHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC--c-hHHHHH
Confidence 999876543210 00110 000 00000 0123456788999988887 6777654 332 2 333445
Q ss_pred HHhchhcCCCeEEecCCCCCCC
Q 013515 395 SVLPIAMSFGFQLATPFPNGTA 416 (441)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~ 416 (441)
.++. ..+|..+...++..+
T Consensus 279 ~~~~---~~g~~~~~~~~D~~g 297 (506)
T PRK01544 279 QIFL---DHGYNIESVYKDLQG 297 (506)
T ss_pred HHHH---hcCCCceEEEecCCC
Confidence 5543 234544444444443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-10 Score=103.15 Aligned_cols=81 Identities=28% Similarity=0.429 Sum_probs=60.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.++|+.|+|++||.|.+++.+|.. .....|+|+|++|..++.+++|++.++++ +|.++++|+.++... ..||+|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~----~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE----GKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T----T-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc----cccCEE
Confidence 578999999999999999999985 34578999999999999999999999995 488999999988762 689999
Q ss_pred EEcCCCC
Q 013515 318 LLDPSCS 324 (441)
Q Consensus 318 l~DpPCS 324 (441)
+++.|-+
T Consensus 174 im~lp~~ 180 (200)
T PF02475_consen 174 IMNLPES 180 (200)
T ss_dssp EE--TSS
T ss_pred EECChHH
Confidence 9999954
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=99.24 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=82.2
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe-ccCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH-GDFLNL 304 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~-~D~~~~ 304 (441)
.+...+...++...+..+||++|.+.|..|++||..++..++++++|+++++.+.+++|+++.|+.+ |+++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 6667788888888889999999999999999999999867899999999999999999999999965 77888 588766
Q ss_pred CCCCCCCCCccEEEEcCC
Q 013515 305 DPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpP 322 (441)
... ...++||.||+|+-
T Consensus 125 l~~-~~~~~fDliFIDad 141 (219)
T COG4122 125 LSR-LLDGSFDLVFIDAD 141 (219)
T ss_pred HHh-ccCCCccEEEEeCC
Confidence 543 12378999999987
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8e-10 Score=112.10 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=90.9
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 310 (441)
+-..++...+..++|+|||+|.+++.+|+. ..+|+++|++++.++.|+.|++.+|+.|.+++++.++++-+... .
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~ 451 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPC 451 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccC
Confidence 334567778899999999999999998875 47899999999999999999999999999999997777664431 1
Q ss_pred CCCcc-EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCh
Q 013515 311 YSEVR-AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQV 387 (441)
Q Consensus 311 ~~~fD-~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ 387 (441)
..+-+ ++++|||..|.-. ..+..-.++.+.-++||.||..+-.
T Consensus 452 ~~~~~~v~iiDPpR~Glh~----------------------------------~~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 452 CDSETLVAIIDPPRKGLHM----------------------------------KVIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCCCceEEEECCCcccccH----------------------------------HHHHHHHhccCccceEEEEcCHHHh
Confidence 12335 8999999876532 2233333344478999999987654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-10 Score=107.77 Aligned_cols=94 Identities=27% Similarity=0.369 Sum_probs=79.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~ 311 (441)
+...|.+++|+.++|++||.||+|..+++.+++.++|+|+|.|+.+++.+++++.. .++++++++|+.++..... ..
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence 45567788999999999999999999999987679999999999999999998876 4689999999998763321 12
Q ss_pred CCccEEEEcCCCCCCcc
Q 013515 312 SEVRAILLDPSCSGSGT 328 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~ 328 (441)
.+||+|++|.-+|..-.
T Consensus 89 ~~vDgIl~DLGvSs~Ql 105 (296)
T PRK00050 89 GKVDGILLDLGVSSPQL 105 (296)
T ss_pred CccCEEEECCCcccccc
Confidence 37999999999998754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=97.68 Aligned_cols=84 Identities=24% Similarity=0.151 Sum_probs=70.9
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
.+..+...+...++.+|||+|||+|..+.++++. ..+|+|+|+++.+++.++++++..++.++++.+.|+.+++..
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 93 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD- 93 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-
Confidence 3445566677778899999999999999999875 358999999999999999999999988899999998776542
Q ss_pred CCCCCccEEEE
Q 013515 309 PAYSEVRAILL 319 (441)
Q Consensus 309 ~~~~~fD~Il~ 319 (441)
+.||.|++
T Consensus 94 ---~~fD~I~~ 101 (197)
T PRK11207 94 ---GEYDFILS 101 (197)
T ss_pred ---CCcCEEEE
Confidence 56999985
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.1e-09 Score=100.18 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=97.6
Q ss_pred CcccccchhhHHHHHHh-CCCCCC-EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 013515 221 GCVFLQGKASSMVAAAL-APKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l-~~~~g~-~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~ 298 (441)
+.++.......++-.++ .....+ +|||+|||+|-.++.++.... ...|+|+|+|+.+++.+++|++++|+.++.++.
T Consensus 88 ~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 88 GVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred CceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 33444444444544432 222222 799999999999999998754 479999999999999999999999987777777
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHH-HH---HHHHHHHHHHHHHhCCCCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMER-LN---KLSAFQKKALRHALSFPGV 374 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~-~~---~l~~~Q~~lL~~a~~~~~~ 374 (441)
+|...... ++||.|+.+||+=..-.....|+.. .+ .+.. +- .-...-+.++..+..+++.
T Consensus 167 ~dlf~~~~-----~~fDlIVsNPPYip~~~~~~~~~~~--~~---------EP~~Al~~g~dGl~~~~~i~~~a~~~l~~ 230 (280)
T COG2890 167 SDLFEPLR-----GKFDLIVSNPPYIPAEDPELLPEVV--RY---------EPLLALVGGGDGLEVYRRILGEAPDILKP 230 (280)
T ss_pred eecccccC-----CceeEEEeCCCCCCCcccccChhhh--cc---------CHHHHHccCccHHHHHHHHHHhhHHHcCC
Confidence 76544221 4799999999984332000001000 00 0110 00 2345778899999888875
Q ss_pred cEEEEEcCCCCChhcHHHHHHHh
Q 013515 375 ERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 375 G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
|.++..-++... .+.|.+.+
T Consensus 231 ~g~l~le~g~~q---~~~v~~~~ 250 (280)
T COG2890 231 GGVLILEIGLTQ---GEAVKALF 250 (280)
T ss_pred CcEEEEEECCCc---HHHHHHHH
Confidence 433333344433 33444444
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=96.94 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=103.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.+.++.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++++ .++.++++|+.++... .+||.|
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~----~kFDlI 130 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESN----EKFDVV 130 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhccc----CCCcEE
Confidence 455677999999999999998877643 369999999999999998863 3678999999876532 579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHH-----------HHHHHHHHhCCCC-Cc--EEEEEcCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF-----------QKKALRHALSFPG-VE--RVVYSTCS 383 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~-----------Q~~lL~~a~~~~~-~G--~lvYsTCS 383 (441)
++|||........+ ...... -.+.+.....+++ +| .++||+--
T Consensus 131 IsNPPF~~l~~~d~-----------------------~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 131 ISNPPFGKINTTDT-----------------------KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred EEcCCccccCchhh-----------------------hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 99999764332111 111111 1345555556665 45 56788744
Q ss_pred C-CChhcHHHHHHHhchhcCCCeEEec--------CCCCCCCccccccccceeeee
Q 013515 384 I-HQVENEDVIKSVLPIAMSFGFQLAT--------PFPNGTAEASQFLKALSIYFE 430 (441)
Q Consensus 384 ~-~~~ENe~vV~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~f~ 430 (441)
+ |..-..+-..++|+ ..+|+... ..-+|... +..+.-++++|.
T Consensus 188 ~y~~sl~~~~y~~~l~---~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (279)
T PHA03411 188 YYDGTMKSNKYLKWSK---QTGLVTYAGCGIDTSIYRDEWHST-NVLTEVVEVRYY 239 (279)
T ss_pred cccccCCHHHHHHHHH---hcCcEecCCCCcccceehhhccCC-CccceEEEEEec
Confidence 4 55555666677774 45666533 13356543 333455667775
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-09 Score=99.01 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=105.9
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhc--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~--~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|+..+.+..++.. ...+.+|||+|||+|..++.++..+. +...|+|+|+++.+++.+++|+. ++.++++|
T Consensus 34 fTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D 105 (241)
T PHA03412 34 FTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINAD 105 (241)
T ss_pred CCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcc
Confidence 4445444443322 23478999999999999999988653 34699999999999999998753 47788999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEE--
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVV-- 378 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lv-- 378 (441)
+...... .+||.|+.+||..-... .|.. . + ..-...-..++..|.+++++|.+|
T Consensus 106 ~~~~~~~----~~FDlIIsNPPY~~~~~----~d~~-a--------r-------~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 106 ALTTEFD----TLFDMAISNPPFGKIKT----SDFK-G--------K-------YTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred hhccccc----CCccEEEECCCCCCccc----cccC-C--------c-------ccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 9865431 57999999999865431 1100 0 0 001233456778888877755433
Q ss_pred -------EEcCCCCC-hhc--HHHHHHHhchhcCCCeEEec--------CCCCCCCccccccccceeeee
Q 013515 379 -------YSTCSIHQ-VEN--EDVIKSVLPIAMSFGFQLAT--------PFPNGTAEASQFLKALSIYFE 430 (441)
Q Consensus 379 -------YsTCS~~~-~EN--e~vV~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~f~ 430 (441)
||-|-... +|| ..-+.+|++ +-+++... ..-+|... +....-++++|.
T Consensus 162 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 227 (241)
T PHA03412 162 QMSANFRYSGTHYFRQDESTTSSKCKKFLD---ETGLEMNPGCGIDTGYYLEDWKGV-KPLCEVVCMEFN 227 (241)
T ss_pred cccccCcccCccceeeccCcccHHHHHHHH---hcCeeecCCCCccceeehhhccCC-CccceEEEEeec
Confidence 66665541 232 234556664 33443322 13356543 333455667765
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.1e-09 Score=95.34 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=67.6
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
+..+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++++.+..|++ +.+...|....+..
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~-- 92 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN-- 92 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc--
Confidence 334445666667789999999999999999975 369999999999999999999888875 77778887654432
Q ss_pred CCCCccEEEEcCC
Q 013515 310 AYSEVRAILLDPS 322 (441)
Q Consensus 310 ~~~~fD~Il~DpP 322 (441)
.+||.|++..+
T Consensus 93 --~~fD~I~~~~~ 103 (195)
T TIGR00477 93 --EDYDFIFSTVV 103 (195)
T ss_pred --CCCCEEEEecc
Confidence 56999986544
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=96.26 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
-.|.+|||++||+|..++..+.+ +..+++.+|.+.+.+..+++|++.+++ .+++++..|+..........+.||.|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 46999999999999999988775 568999999999999999999999995 578889999885533332224599999
Q ss_pred EcCCC
Q 013515 319 LDPSC 323 (441)
Q Consensus 319 ~DpPC 323 (441)
+|||.
T Consensus 120 lDPPy 124 (187)
T COG0742 120 LDPPY 124 (187)
T ss_pred eCCCC
Confidence 99996
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.6e-10 Score=100.59 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC-CCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD-PAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~-~~~~~fD~Il 318 (441)
+|.+|||+|||+|..++....+ ++.+|+.+|.++..++.+++|++.+++.+ ++++..|+....... ....+||.|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 6999999999999999987665 56899999999999999999999999865 889999965443211 0126899999
Q ss_pred EcCCC
Q 013515 319 LDPSC 323 (441)
Q Consensus 319 ~DpPC 323 (441)
+|||.
T Consensus 120 lDPPY 124 (183)
T PF03602_consen 120 LDPPY 124 (183)
T ss_dssp E--ST
T ss_pred ECCCc
Confidence 99996
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=103.28 Aligned_cols=79 Identities=25% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+|++|+||+||-|.+|+.+|..- ..+|+|+|++|..++.+++|++.+++.+ |.++++|+..+.+.. ..||+|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEEE
Confidence 459999999999999999999873 3349999999999999999999999976 899999999988764 6799999
Q ss_pred EcCCC
Q 013515 319 LDPSC 323 (441)
Q Consensus 319 ~DpPC 323 (441)
+.-|-
T Consensus 262 m~~p~ 266 (341)
T COG2520 262 MGLPK 266 (341)
T ss_pred eCCCC
Confidence 98884
|
|
| >PRK09634 nusB transcription antitermination protein NusB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-09 Score=95.31 Aligned_cols=107 Identities=13% Similarity=0.194 Sum_probs=76.9
Q ss_pred HHHHHHHHHHccChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc------cchHHHHHH
Q 013515 37 EAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW------KRQEELVYI 110 (441)
Q Consensus 37 ~A~~vL~~v~~~~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~------~~~~~lL~l 110 (441)
.|.+.-+++.+|.+.+..+..+... .....+++|+++|||||+|++..||++|.+ +++ +| ..++.+||+
T Consensus 82 ~~~~~~~~~~ng~s~~~~lp~ll~~--~~q~~~r~~a~~Lv~gvlr~~~~LD~iI~~--~l~-~W~l~rL~~idr~ILRl 156 (207)
T PRK09634 82 EALTLAETAINRLSAALELPELLQL--ADQEEVREYALERIGAVIRNRKEIDQLLDT--VMV-GWQLKRLPRIDRDILRL 156 (207)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHhHHHHHHHHHH--Hhc-cccccCCCHHHHHHHHH
Confidence 3555556666665555444443221 122578999999999999999999999998 454 23 345889999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhhHHH---HHHHHHHHHHc
Q 013515 111 LTYDILFGQEISLVGDAEKFLMLHKGAI---QLALAQLLVRN 149 (441)
Q Consensus 111 ~~yql~f~~~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~~ 149 (441)
|+||++|++ +|.++.||++|+.+|..- ...|.|.+.++
T Consensus 157 avyELl~l~-~P~~vaINEAVeLAK~~~~~~~~~FVNaVLrr 197 (207)
T PRK09634 157 AVVEILFLN-TPAAVAINEAVELAKRYSDEQGRRFINGVLRR 197 (207)
T ss_pred HHHHHHhcC-CCchhHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence 999999995 899999999999987521 13455555554
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-09 Score=93.72 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=71.7
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. .++++++++|+.+++...
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~--- 75 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK--- 75 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc---
Confidence 3455677888999999999999999999886 36899999999999999999864 358999999999887543
Q ss_pred CCccEEEEcCCC
Q 013515 312 SEVRAILLDPSC 323 (441)
Q Consensus 312 ~~fD~Il~DpPC 323 (441)
..||.|+.|||.
T Consensus 76 ~~~d~vi~n~Py 87 (169)
T smart00650 76 LQPYKVVGNLPY 87 (169)
T ss_pred cCCCEEEECCCc
Confidence 468999999996
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-09 Score=97.92 Aligned_cols=82 Identities=20% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~-~~~~~fD~Il 318 (441)
.|.+|||+|||+|..++.++.+ +...|+++|.++..++.+++|++.+++. +++++++|+....... .....||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5889999999999999998886 3468999999999999999999999985 6899999996542211 0112489999
Q ss_pred EcCCCC
Q 013515 319 LDPSCS 324 (441)
Q Consensus 319 ~DpPCS 324 (441)
+|||..
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999974
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0781 NusB Transcription termination factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.3e-09 Score=90.49 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHccChhh--HHHHhhhhh-hc-CCC--ccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccc--
Q 013515 32 YFARREAAKVLRLVLRGDARR--RAVGSIKSL-VY-SPS--VKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKR-- 103 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~--~~~~~~~~~-~~-~~~--~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~-- 103 (441)
..+|..|+++|++++.++... ++...+... .. ..+ ..+..|+..|+.||++++..||.+|.+ ++.. |..
T Consensus 11 ~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~--~L~~-w~~~r 87 (151)
T COG0781 11 RQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISP--HLKK-WSLER 87 (151)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHcc-CCHHH
Confidence 349999999999998854421 222211111 01 111 157899999999999999999999998 5564 542
Q ss_pred ----hHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhH
Q 013515 104 ----QEELVYILTYDILFGQEISLVGDAEKFLMLHKG 136 (441)
Q Consensus 104 ----~~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~ 136 (441)
.+.+||+++||++|.+++|....|||+|+.+|.
T Consensus 88 L~~verAILRla~yEl~~~~dvP~~VvInEaielaK~ 124 (151)
T COG0781 88 LDLVERAILRLALYELLFRDDVPYKVVINEAIELAKK 124 (151)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 388999999999999889999999999999885
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=94.99 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=71.1
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
..|...+..+...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++++ .++.++.+|+..
T Consensus 14 ~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~ 87 (258)
T PRK01683 14 DERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIAS 87 (258)
T ss_pred HHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhc
Confidence 3455556566666777889999999999999999999875 4479999999999999998764 467888999987
Q ss_pred CCCCCCCCCCccEEEEcCC
Q 013515 304 LDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpP 322 (441)
+... .+||.|+++..
T Consensus 88 ~~~~----~~fD~v~~~~~ 102 (258)
T PRK01683 88 WQPP----QALDLIFANAS 102 (258)
T ss_pred cCCC----CCccEEEEccC
Confidence 6432 57999997654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=98.40 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=85.8
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
.+|...+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++.. .+.++++|+..
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~ 96 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence 478888888888887767889999999999999888764 3689999999999999887643 24578899988
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
++..+ ++||.|+...+ +..-+| ...+|..+.+.++ ||.++++|
T Consensus 97 ~~~~~---~~fD~V~s~~~------l~~~~d--------------------------~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 97 LPLAT---ATFDLAWSNLA------VQWCGN--------------------------LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CcCCC---CcEEEEEECch------hhhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEe
Confidence 76543 67999986433 100000 1366777888777 68888875
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=92.34 Aligned_cols=115 Identities=24% Similarity=0.254 Sum_probs=85.3
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
+...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++... ...++.+..+|+...+... +
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~---~ 86 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPD---G 86 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCC---C
Confidence 34567788899999999999999999999875568999999999999999888333 2357899999988766433 6
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.||.|+++-- +..-+ . +..+++.+.+.++ ||.++.+.+.
T Consensus 87 ~~D~v~~~~~------~~~~~----------------~----------~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 87 SFDAVRSDRV------LQHLE----------------D----------PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CceEEEEech------hhccC----------------C----------HHHHHHHHHHHhcCCcEEEEEecC
Confidence 7999987422 11000 0 1356777777776 7888877653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-08 Score=95.42 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.++.+|||+|||+|..+..+++.+ .+..+|+++|+++.|++.++++++..|.. ++.++++|+.+++. ..+|.|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMV 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCEE
Confidence 478899999999999999888754 35689999999999999999999988864 79999999987653 347888
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++.-. ...+ .. ..+..++....+.|+ ||.++.+..
T Consensus 130 v~~~~---l~~l--------------------~~-------~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 130 VLNFT---LQFL--------------------EP-------SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ehhhH---HHhC--------------------CH-------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 74211 1110 01 113467888888777 788877753
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.7e-08 Score=93.26 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.+|.+|||+|||+|..+..++.. + ..+|+|+|+++.+++.+++|++.+++ .++.+..+| .+||.|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 467999999999999888876654 3 35799999999999999999999887 344433222 168999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
+++... + ....++..+.++++ ||.++.|... .+ ..+-+...
T Consensus 184 vani~~----------------------------~-------~~~~l~~~~~~~LkpgG~lilsgi~--~~-~~~~v~~~ 225 (250)
T PRK00517 184 VANILA----------------------------N-------PLLELAPDLARLLKPGGRLILSGIL--EE-QADEVLEA 225 (250)
T ss_pred EEcCcH----------------------------H-------HHHHHHHHHHHhcCCCcEEEEEECc--Hh-hHHHHHHH
Confidence 975320 0 01355677777776 7888887443 23 33333344
Q ss_pred hchhcCCCeEEec
Q 013515 397 LPIAMSFGFQLAT 409 (441)
Q Consensus 397 l~~~~~~~~~~~~ 409 (441)
+ ...+|++..
T Consensus 226 l---~~~Gf~~~~ 235 (250)
T PRK00517 226 Y---EEAGFTLDE 235 (250)
T ss_pred H---HHCCCEEEE
Confidence 4 245777654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=93.52 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=81.1
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCCC
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
..+++.+|.+|||+|||+|..+..++.. +...|+++|+++.++..++..-+..+ ..++.+...++.+++.. ..
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~ 188 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YA 188 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CC
Confidence 3456778999999999999999888765 33589999999999876544333222 24677888888877643 47
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
||.|++ .|++-+.+| + ...|..+.+.++ ||.||.+|..+...+
T Consensus 189 FD~V~s------~gvL~H~~d----------------p----------~~~L~el~r~LkpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 189 FDTVFS------MGVLYHRKS----------------P----------LEHLKQLKHQLVIKGELVLETLVIDGDL 232 (314)
T ss_pred cCEEEE------cchhhccCC----------------H----------HHHHHHHHHhcCCCCEEEEEEEEecCcc
Confidence 999984 455433221 1 246777777776 899998876655443
|
Known examples to date are restricted to the proteobacteria. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-09 Score=100.02 Aligned_cols=93 Identities=23% Similarity=0.388 Sum_probs=74.4
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC-
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK- 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~- 307 (441)
.+++..++......+||++|++.|..|++||+.+++.++|+++|+++++.+.+++++++.|+ ++|+++.+|+.+..+.
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence 34444444444566999999999999999999888789999999999999999999999998 5799999999865321
Q ss_pred --CCCCCCccEEEEcCC
Q 013515 308 --DPAYSEVRAILLDPS 322 (441)
Q Consensus 308 --~~~~~~fD~Il~DpP 322 (441)
....+.||.|++|+.
T Consensus 114 ~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HHTTTTTSEEEEEEEST
T ss_pred HhccCCCceeEEEEccc
Confidence 111257999999997
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-07 Score=92.52 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=80.9
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~ 310 (441)
.+...+.+..|.+|||+|||+|..+..++.. +...|+++|+++.++...+...+..+. .+|.++.+|+.+++. .
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~-- 187 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L-- 187 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c--
Confidence 3344666667899999999999999999886 235799999999988765544443332 478999999988875 2
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||.|++ .|++-+..| + ..+|..+.+.++ ||.+|.+|-
T Consensus 188 -~~FD~V~s------~~vl~H~~d----------------p----------~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 188 -KAFDTVFS------MGVLYHRRS----------------P----------LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred -CCcCEEEE------CChhhccCC----------------H----------HHHHHHHHHhcCCCcEEEEEEE
Confidence 67999984 344432111 1 356777777666 788887753
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=96.71 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=64.4
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
.-+...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++. ++.++++|+.++.+ .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~-- 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP-K-- 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC-C--
Confidence 344556677889999999999999999999876 457999999999999988652 46788999987642 2
Q ss_pred CCCccEEEEcCC
Q 013515 311 YSEVRAILLDPS 322 (441)
Q Consensus 311 ~~~fD~Il~DpP 322 (441)
++||.|++...
T Consensus 88 -~~fD~v~~~~~ 98 (255)
T PRK14103 88 -PDTDVVVSNAA 98 (255)
T ss_pred -CCceEEEEehh
Confidence 67999998655
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=7e-08 Score=94.59 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=87.4
Q ss_pred hHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 013515 230 SSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 306 (441)
Q Consensus 230 s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~ 306 (441)
..+....+. ..+|.+|||+|||+|..+..++.+ +..+|+|+|+++.+++.+++|++.+++. ++.+...|....
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-- 221 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-- 221 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--
Confidence 344444433 457899999999999999887764 3469999999999999999999999885 466666653221
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. .++||.|+++..+ .. ...++..+.++++ ||.++.|.. .
T Consensus 222 ~---~~~fDlVvan~~~----------------------------~~-------l~~ll~~~~~~LkpgG~li~sgi--~ 261 (288)
T TIGR00406 222 I---EGKADVIVANILA----------------------------EV-------IKELYPQFSRLVKPGGWLILSGI--L 261 (288)
T ss_pred c---CCCceEEEEecCH----------------------------HH-------HHHHHHHHHHHcCCCcEEEEEeC--c
Confidence 1 1579999987531 00 1356677777776 788887653 3
Q ss_pred ChhcHHHHHHHhchhcCCCeEEec
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
. +....|...++ .. |+++.
T Consensus 262 ~-~~~~~v~~~~~---~~-f~~~~ 280 (288)
T TIGR00406 262 E-TQAQSVCDAYE---QG-FTVVE 280 (288)
T ss_pred H-hHHHHHHHHHH---cc-Cceee
Confidence 3 33344444443 23 65544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.7e-09 Score=96.61 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
-+|.+|||+|||-|..+..||++ +..|+|+|++++.++.++......|+. |...+..+.++.... ++||+|++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~---~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG---GQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC---CCccEEEE
Confidence 46999999999999999999987 279999999999999999999998874 556666666655432 68999984
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.-|+-+-||. ..+++++.++++ +|.++.||=.
T Consensus 131 ------mEVlEHv~dp--------------------------~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 ------MEVLEHVPDP--------------------------ESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ------hhHHHccCCH--------------------------HHHHHHHHHHcCCCcEEEEeccc
Confidence 3344332321 358999999988 6899998754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=96.99 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.++.+|||+|||+|..+..++.. ..+|+++|+++++++.++++++..|+ ++++++++|+.++.... .++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~--~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL--ETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc--CCCCCEEE
Confidence 45789999999999999999886 36899999999999999999999887 57999999998765322 16799999
Q ss_pred Ec
Q 013515 319 LD 320 (441)
Q Consensus 319 ~D 320 (441)
+.
T Consensus 118 ~~ 119 (255)
T PRK11036 118 FH 119 (255)
T ss_pred eh
Confidence 64
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-08 Score=94.64 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=73.7
Q ss_pred hhcCcccccch-hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 013515 218 IVNGCVFLQGK-ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296 (441)
Q Consensus 218 ~~~g~~~~Qd~-ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~ 296 (441)
|-.|++..... ....++..+.+.++.+|||+|||+|+.+..++... ..+|+++|+++.+++.++++... ..++.+
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~ 103 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEF 103 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEE
Confidence 44455555432 34455566788999999999999999999888753 36999999999999999988654 257899
Q ss_pred EeccCCCCCCCCCCCCCccEEEE
Q 013515 297 LHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 297 ~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++|+...+..+ ++||+|++
T Consensus 104 ~~~D~~~~~~~~---~~FD~V~s 123 (263)
T PTZ00098 104 EANDILKKDFPE---NTFDMIYS 123 (263)
T ss_pred EECCcccCCCCC---CCeEEEEE
Confidence 999998765433 68999986
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=89.93 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=70.4
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~ 309 (441)
..+...+.+.++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+. .++.++.+|+.+.+...
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~- 119 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD- 119 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC-
Confidence 3445566677889999999999999999998864357999999999999999999887655 46889999998766432
Q ss_pred CCCCccEEEE
Q 013515 310 AYSEVRAILL 319 (441)
Q Consensus 310 ~~~~fD~Il~ 319 (441)
+.||.|++
T Consensus 120 --~~~D~I~~ 127 (239)
T PRK00216 120 --NSFDAVTI 127 (239)
T ss_pred --CCccEEEE
Confidence 67999975
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=98.05 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=80.8
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~ 301 (441)
|.++......++..+++.+++.|||+|||+|..|..++.. ..+|+|+|+|+.+++.+++++...+ .++++++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3444445566777788889999999999999999999876 3689999999999999999998877 47899999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCc
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~G 327 (441)
...+. ..||.|+.++|...+.
T Consensus 95 l~~~~-----~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 LKTEF-----PYFDVCVANVPYQISS 115 (294)
T ss_pred hhhcc-----cccCEEEecCCcccCc
Confidence 87652 4589999999987554
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-08 Score=93.98 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=91.4
Q ss_pred hhHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 013515 229 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD 305 (441)
Q Consensus 229 ss~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~ 305 (441)
...+....|+ .++|.+|||+|||+|-.++.++.+ +..+|+|+|+|+-+++.+++|++++|+.. +.....+....+
T Consensus 148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 3445555554 358999999999999999887776 56899999999999999999999999864 222222222222
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
. .++||+|+++- |+..=.++.......++ +|+++.|= |
T Consensus 226 ~----~~~~DvIVANI-----------------------------------LA~vl~~La~~~~~~lkpgg~lIlSG--I 264 (300)
T COG2264 226 E----NGPFDVIVANI-----------------------------------LAEVLVELAPDIKRLLKPGGRLILSG--I 264 (300)
T ss_pred c----cCcccEEEehh-----------------------------------hHHHHHHHHHHHHHHcCCCceEEEEe--e
Confidence 1 25899998643 12222355555666666 78999875 5
Q ss_pred CChhcHHHHHHHhchhcCCCeEEecC
Q 013515 385 HQVENEDVIKSVLPIAMSFGFQLATP 410 (441)
Q Consensus 385 ~~~ENe~vV~~~l~~~~~~~~~~~~~ 410 (441)
..+. ++.|...++ +.+|++++.
T Consensus 265 l~~q-~~~V~~a~~---~~gf~v~~~ 286 (300)
T COG2264 265 LEDQ-AESVAEAYE---QAGFEVVEV 286 (300)
T ss_pred hHhH-HHHHHHHHH---hCCCeEeEE
Confidence 5555 555555542 457887653
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=99.31 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.+|.+|||+|||+|..+..++.. ...|+++|+++++++.++.+.+..+. .+|.++++|+.+++... ++||+
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~ 201 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDA 201 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCE
Confidence 3567889999999999999988864 36999999999999999988776554 57999999998876443 68999
Q ss_pred EEE
Q 013515 317 ILL 319 (441)
Q Consensus 317 Il~ 319 (441)
|++
T Consensus 202 Vi~ 204 (322)
T PLN02396 202 VLS 204 (322)
T ss_pred EEE
Confidence 984
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=98.45 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=66.1
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
..|..--..++..++++||++|||+|||-|+.+..+++.. ..+|+++.+|++..+.+++.+++.|+ +.+++...|..
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 3444455677778889999999999999999999999986 36999999999999999999999998 46999999998
Q ss_pred CCCCCCCCCCCccEEEE
Q 013515 303 NLDPKDPAYSEVRAILL 319 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~ 319 (441)
+++ .+||+|+.
T Consensus 123 ~~~------~~fD~IvS 133 (273)
T PF02353_consen 123 DLP------GKFDRIVS 133 (273)
T ss_dssp G---------S-SEEEE
T ss_pred ccC------CCCCEEEE
Confidence 765 37999974
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.1e-08 Score=89.34 Aligned_cols=143 Identities=24% Similarity=0.251 Sum_probs=98.4
Q ss_pred hHHHHHHh------CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 230 SSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 230 s~l~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
|-|++.++ .+++|.+||-+||++|..-.|++..++..|.|+|+|.++...+.+-+.+++. +||..+.+|+..
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 55555553 3678999999999999999999999998899999999999999888777765 589999999987
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHHhCCCC-CcEEEEE-
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK-ALRHALSFPG-VERVVYS- 380 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~-lL~~a~~~~~-~G~lvYs- 380 (441)
...-..-.+.+|+|+.|.. .|| |.+ ++.+|-.+|| +|.++-+
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---------Qp~--------------------------Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---------QPD--------------------------QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---------STT--------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhcccccccEEEecCC---------ChH--------------------------HHHHHHHHHHhhccCCcEEEEEE
Confidence 6533222468999999988 222 233 3455555777 6755443
Q ss_pred --cCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 381 --TCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 381 --TCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.|-=...+.+.+.+...+.....+|++.+
T Consensus 179 Ka~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 179 KARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 33334456677777777666666777644
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-08 Score=93.83 Aligned_cols=107 Identities=11% Similarity=0.034 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCchHHHHH-HHHhcCCcEEEEEeCCHHHHHHHHHHHHH-hCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 241 PGWKVLDACSAPGNKTVHL-AALMKGKGKIVACELNKERVRRLKDTIKL-SGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~l-a~~~~~~~~V~a~D~~~~rl~~l~~~~~~-~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
++++|+|+|||||+.|..+ ++...+.++++++|+++++++.++++++. .|+ ++|++..+|+.+..... +.||.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l---~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL---KEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc---CCcCEE
Confidence 6789999999999876554 43445678999999999999999999965 777 45999999998864332 679999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+++ -+ .|.-. ..+.++|++..+.++ ||.+++-+
T Consensus 200 F~~-AL--i~~dk----------------------------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-AL--VGMDK----------------------------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cc--ccccc----------------------------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 998 22 11100 112578888888776 78888876
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=93.67 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=80.2
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD 305 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~ 305 (441)
....++...++......+||++|++.|..|++||..+++.|+|+++|.++++.+.+++++++.|+ ++|+++.+|+.+..
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 45566766677666677999999999999999999887789999999999999999999999997 67999999997754
Q ss_pred CCCC----CCCCccEEEEcCC
Q 013515 306 PKDP----AYSEVRAILLDPS 322 (441)
Q Consensus 306 ~~~~----~~~~fD~Il~DpP 322 (441)
+... ..++||.|++|+-
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHhccccCCcccEEEecCC
Confidence 3210 0158999999976
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4e-08 Score=94.47 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=93.6
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 303 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~ 303 (441)
-|-..-.++...|.++||++|||+|||-|+.+.++|+.. ..+|+++++|++..+.+++.++..|+. +|++...|-.+
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 344455677778899999999999999999999999985 379999999999999999999999996 89999999887
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+. +.||+|+ +.|++-.- .. +--...++.+.+.|+ +|.++--|-
T Consensus 134 ~~------e~fDrIv------SvgmfEhv-----------------g~-------~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 134 FE------EPFDRIV------SVGMFEHV-----------------GK-------ENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred cc------cccceee------ehhhHHHh-----------------Cc-------ccHHHHHHHHHhhcCCCceEEEEEe
Confidence 66 4599997 46766321 01 111356777777776 676665444
Q ss_pred C
Q 013515 383 S 383 (441)
Q Consensus 383 S 383 (441)
+
T Consensus 178 ~ 178 (283)
T COG2230 178 T 178 (283)
T ss_pred c
Confidence 3
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=105.98 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=105.9
Q ss_pred cccccchhhHHHHHHhCCC-----CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-----
Q 013515 222 CVFLQGKASSMVAAALAPK-----PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----- 291 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~-----~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~----- 291 (441)
.++..+.+-.++-. +... ++.+|||+|||+|..++.++.... ..+|+|+|+++.+++.+++|++.+++
T Consensus 95 VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~ 172 (1082)
T PLN02672 95 IFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGL 172 (1082)
T ss_pred cccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccc
Confidence 34444444444443 3322 256899999999999999998854 46999999999999999999998753
Q ss_pred -----------CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHH-----
Q 013515 292 -----------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL----- 354 (441)
Q Consensus 292 -----------~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~----- 354 (441)
++|+++++|..+..... ..+||+|+.+||.-..+-... .|+++-.+.. ....+......+
T Consensus 173 ~~~~~~~~~l~~rV~f~~sDl~~~~~~~--~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~-~~~~~~~p~~AL~g~~~ 249 (1082)
T PLN02672 173 PVYDGEGKTLLDRVEFYESDLLGYCRDN--NIELDRIVGCIPQILNPNPEAMSKLVTENASE-EFLYSLSNYCALQGFVE 249 (1082)
T ss_pred cccccccccccccEEEEECchhhhcccc--CCceEEEEECCCcCCCcchhhcChhhhhcccc-ccccccCccccccCCCC
Confidence 36999999987654221 136999999999876553211 1111100000 000000000001
Q ss_pred -HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhc
Q 013515 355 -NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 355 -~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~ 398 (441)
..-....++|+..|.++++ +|.++. -+.....+.|.+++++
T Consensus 250 g~dGL~~yr~i~~~a~~~L~pgG~l~l---EiG~~q~~~v~~~l~~ 292 (1082)
T PLN02672 250 DQFGLGLIARAVEEGISVIKPMGIMIF---NMGGRPGQAVCERLFE 292 (1082)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEE---EECccHHHHHHHHHHH
Confidence 2334566889999999887 676664 4455555666645664
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=98.95 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=83.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.++..+.+.++.+|||+|||+|..+..++... ..+|+|+|+++.+++.++++....+ .++.+.++|+...+..+
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~--- 330 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPD--- 330 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCC---
Confidence 34455667789999999999999999998865 3589999999999999998876433 46899999998766433
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||.|++. +++-.-+| ...+|..+.+.++ ||.++.++-
T Consensus 331 ~~fD~I~s~------~~l~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSR------DTILHIQD--------------------------KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEEC------CcccccCC--------------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 579999852 22211111 1366788888777 688776653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6e-08 Score=93.55 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=77.0
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|.+.......++..++..+|+.|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. .++++++++|+.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~ 85 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL 85 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence 3444445666777788889999999999999999999987 26899999999999999988865 468999999998
Q ss_pred CCCCCCCCCCCccEEEEcCCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg 325 (441)
+++. ..||.|+.++|..-
T Consensus 86 ~~~~-----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 KVDL-----PEFNKVVSNLPYQI 103 (258)
T ss_pred cCCc-----hhceEEEEcCCccc
Confidence 8653 34799999999753
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-08 Score=95.02 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=75.1
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|.+...-...++..+++.+|++|||+|||+|..|..++... .+|+|+|+++.+++.+++++.. ++++++++|+.
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~ 97 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDAL 97 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhh
Confidence 33333444556667788899999999999999999999873 4899999999999999987743 58999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGS 326 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~ 326 (441)
+++... ..+|.|+.+||..-+
T Consensus 98 ~~~~~~---~~~~~vv~NlPY~is 118 (272)
T PRK00274 98 KVDLSE---LQPLKVVANLPYNIT 118 (272)
T ss_pred cCCHHH---cCcceEEEeCCccch
Confidence 876432 115899999997543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=89.29 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=77.3
Q ss_pred hHHHHHHhCCCCCC--EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEe
Q 013515 230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GA---ANIEVLH 298 (441)
Q Consensus 230 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~------g~---~~v~~~~ 298 (441)
...++.++++++|. +|||++||.|.-++.++.+ +++|+++|.++.....+++++++. +. .++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46778899999998 9999999999999999987 356999999999999999999985 42 5799999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCS 324 (441)
+|...+..... ..||+|++|||..
T Consensus 152 ~da~~~L~~~~--~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALTDIT--PRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHhhCC--CCCcEEEECCCCC
Confidence 99988765432 4799999999963
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-09 Score=88.70 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
--.|..++|+|||+|..++..+ +.....|+++|++++.++....|++...+ ++.++++|..+..+.. +.||.++
T Consensus 46 diEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~---g~fDtav 119 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKG---GIFDTAV 119 (185)
T ss_pred cccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccC---CeEeeEE
Confidence 3468999999999999885444 34457999999999999999999999887 4688999998877654 7899999
Q ss_pred EcCCCCCCcccc
Q 013515 319 LDPSCSGSGTAA 330 (441)
Q Consensus 319 ~DpPCSg~G~~~ 330 (441)
+||| .|+-.
T Consensus 120 iNpp---FGTk~ 128 (185)
T KOG3420|consen 120 INPP---FGTKK 128 (185)
T ss_pred ecCC---CCccc
Confidence 9999 56543
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-08 Score=82.18 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=58.7
Q ss_pred EEEEcCCCchHHHHHHHHh--cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 245 VLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~--~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
|||+|||+|..+..++..+ ++..+++++|+++.+++.++++....+. +++++++|+.+++... ++||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~---~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD---GKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS---SSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC---CCeeEEEE
Confidence 7999999999999999886 2237999999999999999999998877 7899999999987543 68999995
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.5e-08 Score=76.58 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=77.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+|+|||+|..+..++. .+..+++++|+++..+..+++.....+..++.++.+|+.+..... ..+||.|+++++|
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEA--DESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcccc--CCceEEEEEccce
Confidence 489999999999988877 345799999999999999987655555677899999998876411 2679999999998
Q ss_pred CCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 324 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 324 Sg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
... ...+..++..+.+.++ +|.++++
T Consensus 77 ~~~-------------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-------------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-------------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 642 1223566777777666 6777765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=91.61 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=63.9
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.+...++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.++++++..++ ++++...|+...... ++||
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~----~~fD 186 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQ----EEYD 186 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccccc----CCcc
Confidence 333334559999999999999999875 36999999999999999999999888 788888888765432 6799
Q ss_pred EEEEcC
Q 013515 316 AILLDP 321 (441)
Q Consensus 316 ~Il~Dp 321 (441)
.|++-.
T Consensus 187 ~I~~~~ 192 (287)
T PRK12335 187 FILSTV 192 (287)
T ss_pred EEEEcc
Confidence 998644
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-07 Score=88.31 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.++.+|||+|||+|..+..+++.+. +..+++++|+++.+++.++++++..+. .+++++++|+..++. ..+|.|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEE
Confidence 5788999999999999999988753 458999999999999999999988764 478999999988763 347877
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 127 ~~ 128 (239)
T TIGR00740 127 IL 128 (239)
T ss_pred ee
Confidence 64
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=87.73 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEec----cCCCCCCCCCCCCCcc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHG----DFLNLDPKDPAYSEVR 315 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~----D~~~~~~~~~~~~~fD 315 (441)
.+..+||+|||+|..++.++.-++ .++|+|+|.++.++..+.+|++++++ ..+.+++- |...-.+. ..++.|
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l--~~~~~d 224 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL--LEGKID 224 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc--ccCcee
Confidence 466899999999999999998876 58999999999999999999999998 45666644 33222211 137899
Q ss_pred EEEEcCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 316 AILLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
.++.+||+-..--++. +|+++..+ .+-.+. +.-..-..+..-|.++++ ||.+.+.+-- ..+..
T Consensus 225 llvsNPPYI~~dD~~~l~~eV~~yE----------p~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~--~~~~~ 292 (328)
T KOG2904|consen 225 LLVSNPPYIRKDDNRQLKPEVRLYE----------PKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE--RKEHS 292 (328)
T ss_pred EEecCCCcccccchhhcCchheecC----------chhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc--cccCc
Confidence 9999999854322111 22322111 011111 222344556667778777 7899887552 25555
Q ss_pred HHHHHHhc
Q 013515 391 DVIKSVLP 398 (441)
Q Consensus 391 ~vV~~~l~ 398 (441)
..|...+.
T Consensus 293 ~lv~~~m~ 300 (328)
T KOG2904|consen 293 YLVRIWMI 300 (328)
T ss_pred HHHHHHHH
Confidence 67766663
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-07 Score=84.23 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=66.7
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.....+...++.+|||+|||+|..+..++...+..++++++|+++.+++.++++.. ...++.+..+|+.+.+...
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~--- 104 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFED--- 104 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCC---
Confidence 34445556689999999999999999999886443699999999999999998876 3357889999998876432
Q ss_pred CCccEEEE
Q 013515 312 SEVRAILL 319 (441)
Q Consensus 312 ~~fD~Il~ 319 (441)
++||.|++
T Consensus 105 ~~~D~i~~ 112 (223)
T TIGR01934 105 NSFDAVTI 112 (223)
T ss_pred CcEEEEEE
Confidence 57999985
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=79.06 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=53.9
Q ss_pred EEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 246 LDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
||+|||+|..+..+++. +...|+++|+++.+++.++++....+ +.+..+|+.+++..+ ++||.|++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~---~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLPFPD---NSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSSS-T---T-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCcccc---cccccccc
Confidence 89999999999999987 45899999999999999999876543 558999999997665 78999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=95.08 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=68.0
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
.|......+...+++++|++|||+|||+|+.+.++++.. ..+|+++|+++++++.++++++ +. ++++...|...+
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l 225 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc
Confidence 344445566677888999999999999999999998864 3589999999999999999885 33 477888888665
Q ss_pred CCCCCCCCCccEEEE
Q 013515 305 DPKDPAYSEVRAILL 319 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~ 319 (441)
. ++||.|+.
T Consensus 226 ~------~~fD~Ivs 234 (383)
T PRK11705 226 N------GQFDRIVS 234 (383)
T ss_pred C------CCCCEEEE
Confidence 2 57999985
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=89.59 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..++.+|||+|+|.|..+..++... +..+|+++|+++..++.+++++...+. ++++++.+|+.++....+ .+||.|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~--~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR--HSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC--CCCCEE
Confidence 3456799999999999999998876 458999999999999999999875543 679999999877644332 579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
++|.-- +.+. |+. ....+++..+.+.++ +|.++.-.++
T Consensus 141 ~~D~~~-~~~~----~~~-----------------------l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 141 LVDGFD-GEGI----IDA-----------------------LCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred EEeCCC-CCCC----ccc-----------------------cCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999632 2221 110 002477888888777 6877765444
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=93.83 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=74.9
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHh------cCCcEEEEEeCCHHHHHHHHHHHHHhCC--
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGA-- 291 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~------~~~~~V~a~D~~~~rl~~l~~~~~~~g~-- 291 (441)
.|.|+=-..-+.+++.++.+.++++|+|-|||+|++...+...+ .....++|+|+++..+..++-|+...|.
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 35554445667888999999999999999999999998887754 2457999999999999999999887775
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCc
Q 013515 292 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 292 ~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G 327 (441)
.+..+..+|....+... ....||.|+.+||-+..+
T Consensus 105 ~~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~ 139 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKE 139 (311)
T ss_dssp BGCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES
T ss_pred ccccccccccccccccc-cccccccccCCCCccccc
Confidence 33467888876554332 126899999999987763
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=84.54 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=65.2
Q ss_pred cccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 013515 222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~ 301 (441)
.+.....-|.+ ...++.-++.++||+|||.|.-++.+|++ +-.|+|+|+++..++.+++.+++.+++ |+..+.|.
T Consensus 12 ky~~~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl 86 (192)
T PF03848_consen 12 KYGLTPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADL 86 (192)
T ss_dssp HHTB----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BG
T ss_pred hhCCCCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecc
Confidence 34444444553 34566666789999999999999999987 368999999999999999999999986 89999998
Q ss_pred CCCCCCCCCCCCccEEEE
Q 013515 302 LNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~ 319 (441)
.+.... +.||.|+.
T Consensus 87 ~~~~~~----~~yD~I~s 100 (192)
T PF03848_consen 87 NDFDFP----EEYDFIVS 100 (192)
T ss_dssp CCBS-T----TTEEEEEE
T ss_pred hhcccc----CCcCEEEE
Confidence 876643 56999974
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=85.49 Aligned_cols=154 Identities=22% Similarity=0.190 Sum_probs=101.1
Q ss_pred hhHHHHHHhC----CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 229 ASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 229 ss~l~~~~l~----~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
++....++.+ .++|..|+|+||+|||.+-.+++.++.+++|+|+|+.+-. .+.+|.++.+|++.-
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~ 97 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDE 97 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCc
Confidence 4444444443 4679999999999999999999999888899999998732 135689999999875
Q ss_pred CCC-----CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 305 DPK-----DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 305 ~~~-----~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
... .-....+|.|+.|+----+|+.. -|-.....+-...++-|...++ +|..|
T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~---------------------~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRS---------------------VDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCcc---------------------ccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 521 11123479999998766666431 1112333344455666666666 67655
Q ss_pred EEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCCCCccccc
Q 013515 379 YSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF 421 (441)
Q Consensus 379 YsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 421 (441)
|..+.-++++.+-+.+. ..|+.+.....|..+..+.
T Consensus 157 ---~K~fqg~~~~~~l~~~~----~~F~~v~~~KP~aSR~~S~ 192 (205)
T COG0293 157 ---AKVFQGEDFEDLLKALR----RLFRKVKIFKPKASRKRSR 192 (205)
T ss_pred ---EEEEeCCCHHHHHHHHH----HhhceeEEecCccccCCCc
Confidence 45666777776666663 2455555555565555443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=88.19 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=69.1
Q ss_pred cccchhhHHHHHHhCC---CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 224 FLQGKASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~---~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
.+|......+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. +++.++.+|
T Consensus 14 ~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d 88 (240)
T TIGR02072 14 KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecc
Confidence 4565555555544442 345799999999999999999885 45789999999999998887654 367889999
Q ss_pred CCCCCCCCCCCCCccEEEEcCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpP 322 (441)
+...+... ++||+|+++-.
T Consensus 89 ~~~~~~~~---~~fD~vi~~~~ 107 (240)
T TIGR02072 89 AEKLPLED---SSFDLIVSNLA 107 (240)
T ss_pred hhhCCCCC---CceeEEEEhhh
Confidence 98876443 67999997543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.4e-07 Score=82.95 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.++.+|||+|||+|..+..++.. ..+|+++|++++++..+++++...+. .++.+.++|+...+ .+||.|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence 467899999999999999999875 35899999999999999999988776 57999999987754 468999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 124 i~ 125 (219)
T TIGR02021 124 VC 125 (219)
T ss_pred EE
Confidence 85
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-07 Score=79.97 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=89.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
++|||+|||.|..-..|++--- .+.++++|.++.+++.|+..+++.|.+| |++.+.|+.+..... ++||+|+ |-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~---~qfdlvl-DK 143 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS---GQFDLVL-DK 143 (227)
T ss_pred cceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc---cceeEEe-ec
Confidence 3999999999999888887532 3679999999999999999999999987 999999998864332 6788775 22
Q ss_pred CCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchh
Q 013515 322 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 322 PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~ 400 (441)
. ..-++.-.||..-.+ + . --+...-++++ +|++|-++|-++..|=.+.+.
T Consensus 144 G--T~DAisLs~d~~~~r--------------~----~---~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~------ 194 (227)
T KOG1271|consen 144 G--TLDAISLSPDGPVGR--------------L----V---VYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE------ 194 (227)
T ss_pred C--ceeeeecCCCCcccc--------------e----e---eehhhHhhccCCCcEEEEEecCccHHHHHHHHh------
Confidence 1 011111223321100 0 1 11333334554 799999999988776555544
Q ss_pred cCCCeEEecCCC
Q 013515 401 MSFGFQLATPFP 412 (441)
Q Consensus 401 ~~~~~~~~~~~~ 412 (441)
+.+|+....+|
T Consensus 195 -~~~f~~~~tvp 205 (227)
T KOG1271|consen 195 -NFNFEYLSTVP 205 (227)
T ss_pred -cCCeEEEEeec
Confidence 34576654443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-07 Score=89.59 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++.. ..++.++.+|+.+++... ++||.|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~---~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT---DYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC---CceeEEEE
Confidence 4688999999999999999888764 3799999999999999998764 346788999998876543 67999987
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-07 Score=94.49 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=68.1
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
...++..+|.+|||+|||+|..+..++... +.++|+|+|+++.+++.++++....+. ++.++++|+.+++...+ .++
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fe-deS 487 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFE-KES 487 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccC-CCC
Confidence 334555678999999999999998888875 458999999999999999998876664 68889999987652211 267
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
||.|++.++
T Consensus 488 FDvVVsn~v 496 (677)
T PRK06922 488 VDTIVYSSI 496 (677)
T ss_pred EEEEEEchH
Confidence 999997654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-07 Score=84.66 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.++++++..|+ .++.++..|+...+.. ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeeh
Confidence 3799999999999999988753 47899999999999999999999887 4689999998655332 57999983
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=86.10 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..+.+|||+|||.|+.+..+++. .+..+|+++|+++.+++.+++++...+ -++++++.+|+..+.... .++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET--ENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC--CCcc
Confidence 34679999999999999988765 334689999999999999999987643 247999999998765432 2689
Q ss_pred cEEEEcCC
Q 013515 315 RAILLDPS 322 (441)
Q Consensus 315 D~Il~DpP 322 (441)
|+|++|.+
T Consensus 152 DvIi~D~~ 159 (283)
T PRK00811 152 DVIIVDST 159 (283)
T ss_pred cEEEECCC
Confidence 99999975
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=78.69 Aligned_cols=149 Identities=23% Similarity=0.228 Sum_probs=107.0
Q ss_pred ccccchh-hHHHHHHhC------CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 013515 223 VFLQGKA-SSMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295 (441)
Q Consensus 223 ~~~Qd~s-s~l~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~ 295 (441)
+...++- |-|++.+|. +++|++||=+||++|....|++..++ .|.|+|+|.+++....+-..+++- +||.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~ 127 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNII 127 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCce
Confidence 4444433 555555543 57899999999999999999999987 799999999999999888887764 5899
Q ss_pred EEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH-HHHHhCCCC-
Q 013515 296 VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA-LRHALSFPG- 373 (441)
Q Consensus 296 ~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l-L~~a~~~~~- 373 (441)
.+.+|+.....-..-.+.+|+|+.|.. .|+ |.+| ..+|-.|++
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~DVA---------Qp~--------------------------Qa~I~~~Na~~FLk~ 172 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQDVA---------QPN--------------------------QAEILADNAEFFLKK 172 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEEecC---------Cch--------------------------HHHHHHHHHHHhccc
Confidence 999999875532222367999999987 221 3444 445556777
Q ss_pred Cc--EEEEEcCCCCChhc-HHHHHHHhchhcCCCeEEec
Q 013515 374 VE--RVVYSTCSIHQVEN-EDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 374 ~G--~lvYsTCS~~~~EN-e~vV~~~l~~~~~~~~~~~~ 409 (441)
+| .++-=.-||...+. ++|.+.-++.....+|++.+
T Consensus 173 ~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 173 GGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred CCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 66 55555677776665 44555566555667787755
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=90.45 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=78.5
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PA 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~~ 310 (441)
+..+|.+++|+.++|+.+|-||.|..++..+++ ++|+|+|.++.+++.++++++.++ .++.++++++.++.... ..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcC
Confidence 345677889999999999999999999998765 999999999999999999998764 57999999998876321 11
Q ss_pred CCCccEEEEcCCCCCCcc
Q 013515 311 YSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~ 328 (441)
..++|.|++|-.+|..-.
T Consensus 90 ~~~vDgIl~DLGvSS~Ql 107 (305)
T TIGR00006 90 VTKIDGILVDLGVSSPQL 107 (305)
T ss_pred CCcccEEEEeccCCHhhc
Confidence 257999999999987654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=86.75 Aligned_cols=141 Identities=17% Similarity=0.218 Sum_probs=100.5
Q ss_pred ChhhhcCcccccchh------hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC----------------------
Q 013515 215 HPLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK---------------------- 266 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~s------s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~---------------------- 266 (441)
.++++-||=.-+-.+ +..++.+.+.++++..+|--||+|.+.+..|.+..+-
T Consensus 159 ~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 159 DSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred cchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 455666654444333 3333445567788899999999999999888765321
Q ss_pred ---------c-------EEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccc
Q 013515 267 ---------G-------KIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 267 ---------~-------~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
+ .++++|+++.+++.|+.|+++.|+ +.|++.++|+..+.... +.+|+|++|||+- .-
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYG-eR-- 312 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYG-ER-- 312 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcc-hh--
Confidence 1 378999999999999999999998 56999999999988653 6789999999972 10
Q ss_pred ccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 013515 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 382 (441)
Q Consensus 330 ~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~-G~lvYsTC 382 (441)
+. +. .....+...+.....+.+++ +..|++|-
T Consensus 313 -------lg-----------~~---~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 313 -------LG-----------SE---ALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred -------cC-----------Ch---hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 10 12 33445777777777666664 56666643
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=83.60 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
|.+-.+++...|....-.++||+|||.|..|..||.+. .+++++|+++.+++.+++++.. .++|++.+.|+....
T Consensus 28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~ 102 (201)
T PF05401_consen 28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW 102 (201)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT--
T ss_pred HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC
Confidence 33333444444554556789999999999999998873 6899999999999999999874 478999999997765
Q ss_pred CCCCCCCCccEEEEcCCCCCCcc
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~ 328 (441)
+. +.||.|+ ||..+-
T Consensus 103 P~----~~FDLIV----~SEVlY 117 (201)
T PF05401_consen 103 PE----GRFDLIV----LSEVLY 117 (201)
T ss_dssp -S----S-EEEEE----EES-GG
T ss_pred CC----CCeeEEE----EehHhH
Confidence 43 7899999 555553
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=88.66 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=59.4
Q ss_pred hhHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 229 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 229 ss~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
..++...+|. ..+|.+|||+|||+|-.++..+.+ +..+|+|+|+++..++.+++|++.+|+.. .+......+..
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~- 222 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLV- 222 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTC-
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccc-
Confidence 4455555544 467999999999999988877665 45799999999999999999999999854 22222211111
Q ss_pred CCCCCCCccEEEEc
Q 013515 307 KDPAYSEVRAILLD 320 (441)
Q Consensus 307 ~~~~~~~fD~Il~D 320 (441)
..+||.|+.+
T Consensus 223 ----~~~~dlvvAN 232 (295)
T PF06325_consen 223 ----EGKFDLVVAN 232 (295)
T ss_dssp ----CS-EEEEEEE
T ss_pred ----cccCCEEEEC
Confidence 1689999864
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=84.91 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=87.7
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
...+...++..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.++++++..|+ ++|+++.+|+.+.+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-- 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--
Confidence 4455566777888999999999999999999986 4579999997 7899999999999998 569999999976432
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
..+|.|++ + +++.. ++.+ .-.++|+++.+.++ ||+++-....+...
T Consensus 214 ---~~~D~v~~----~--~~lh~-----------------~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 260 (306)
T TIGR02716 214 ---PEADAVLF----C--RILYS-----------------ANEQ-------LSTIMCKKAFDAMRSGGRLLILDMVIDDP 260 (306)
T ss_pred ---CCCCEEEe----E--hhhhc-----------------CChH-------HHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 23588875 1 12210 1111 11467889988777 67765554434333
Q ss_pred hc
Q 013515 388 EN 389 (441)
Q Consensus 388 EN 389 (441)
++
T Consensus 261 ~~ 262 (306)
T TIGR02716 261 EN 262 (306)
T ss_pred CC
Confidence 33
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-06 Score=82.42 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=84.4
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
.++...+.+.++.+|||+|||+|..+..+++. ...++++|+++.+++.+++++...+. ++.+...|+..+....
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-- 111 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH-- 111 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc--
Confidence 45555555678999999999999999888875 25799999999999999999888776 5778888887665322
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
.++||+|++.-..... ++ . ..+|..+.++++ +|.++.+++.-
T Consensus 112 ~~~fD~Ii~~~~l~~~------~~----------------~----------~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 112 PGQFDVVTCMEMLEHV------PD----------------P----------ASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCCccEEEEhhHhhcc------CC----------------H----------HHHHHHHHHHcCCCcEEEEEecCC
Confidence 2689999874322111 00 1 256777777776 78888877653
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=81.18 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=97.2
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
.+-+.-.+++..++..-...++||+|.-+|..++.+|..++..|+|+++|+++...+...+..+..|+ ..|+++++++.
T Consensus 56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence 34455677777777777788999999999999999999999999999999999999999999999998 56999999887
Q ss_pred CCCCC---CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 303 NLDPK---DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 303 ~~~~~---~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
+...+ +...+.||.+++|+= + + .......+++++++ ||.|+
T Consensus 136 esLd~l~~~~~~~tfDfaFvDad---------K-------------------~-------nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 136 ESLDELLADGESGTFDFAFVDAD---------K-------------------D-------NYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred hhHHHHHhcCCCCceeEEEEccc---------h-------------------H-------HHHHHHHHHHhhcccccEEE
Confidence 54321 123478999999976 0 0 11266788889888 67777
Q ss_pred EE
Q 013515 379 YS 380 (441)
Q Consensus 379 Ys 380 (441)
+=
T Consensus 181 ~D 182 (237)
T KOG1663|consen 181 VD 182 (237)
T ss_pred Ee
Confidence 74
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-07 Score=86.68 Aligned_cols=115 Identities=18% Similarity=0.106 Sum_probs=88.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
..+||+|||.|.+.+++|..- +....+|+|+....+..+.+.+.+.|++|+.+++.|+..+.......++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 589999999999999999985 5578999999999999999999999999999999999887754433358899999777
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+- |++ ++-.+---.|...|+...+.|+ ||.|-..|=
T Consensus 129 DP------------WpK------------kRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 DP------------WPK------------KRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CC------------CCC------------ccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 31 221 1111112256777887777777 677776653
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-07 Score=83.29 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..++...+ ...++|+|+++.+++.+++++ .++.+.++|+.+ +..+ ++||+|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~---~sfD~V 109 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKD---NFFDLV 109 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCC---CCEEEE
Confidence 345688999999999999999988754 479999999999999998764 346678888877 3332 689999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 110 ~~ 111 (204)
T TIGR03587 110 LT 111 (204)
T ss_pred EE
Confidence 84
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=92.40 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=68.5
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
+|......+...+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++... ..+++.++++|+...
T Consensus 21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSP 95 (475)
T ss_pred cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEeccccc
Confidence 444445566667777788899999999999999999862 689999999999987654221 236899999999643
Q ss_pred CCCCCCCCCccEEEEcCCC
Q 013515 305 DPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPC 323 (441)
....+ .++||.|++..++
T Consensus 96 ~~~~~-~~~fD~I~~~~~l 113 (475)
T PLN02336 96 DLNIS-DGSVDLIFSNWLL 113 (475)
T ss_pred ccCCC-CCCEEEEehhhhH
Confidence 22111 2679999987653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.2e-07 Score=94.89 Aligned_cols=135 Identities=11% Similarity=0.057 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHH--HHHh---CC--CcEEEEeccCCCCCCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLS---GA--ANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~--~~~~---g~--~~v~~~~~D~~~~~~~~~~~~ 312 (441)
.++.+|||+|+|.|..+..+++. ++..+|+++|+|+++++.++++ +... .. ++++++.+|+.++....+ +
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~--~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA--E 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC--C
Confidence 45679999999999999888764 3236999999999999999984 3322 12 579999999987653322 6
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
+||.|++|+|... .|+. .. -...++++.+.+.++ +|.++..+++-. ...+
T Consensus 373 ~fDvIi~D~~~~~------~~~~----------------~~-----L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~ 423 (521)
T PRK03612 373 KFDVIIVDLPDPS------NPAL----------------GK-----LYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPK 423 (521)
T ss_pred CCCEEEEeCCCCC------Ccch----------------hc-----cchHHHHHHHHHhcCCCeEEEEecCCcc--cchH
Confidence 8999999988421 0100 00 011456677777777 687776665433 3344
Q ss_pred HHHHHhchhcCCCeE
Q 013515 392 VIKSVLPIAMSFGFQ 406 (441)
Q Consensus 392 vV~~~l~~~~~~~~~ 406 (441)
.+..+.+..++.+|.
T Consensus 424 ~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 424 AFWSIEATLEAAGLA 438 (521)
T ss_pred HHHHHHHHHHHcCCE
Confidence 444444433444563
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=82.06 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+.+|||+|||+|..+..++.. ...++++|+++.+++.+++++...+..++.+..+|+.+.+...+ .+||.|++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~D~i~~ 118 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGA--KSFDVVTC 118 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCC--CCccEEEe
Confidence 34789999999999999888774 24699999999999999999998887678888999887664432 57999986
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.-. +..- .-...+|..+.+.++ +|.++.++|.
T Consensus 119 ~~~------l~~~--------------------------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 119 MEV------LEHV--------------------------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hhH------HHhC--------------------------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 321 1000 011356777777776 7888877764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.8e-07 Score=87.51 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEe-ccCCCCCCCC-CCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLH-GDFLNLDPKD-PAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~~-~v~~~~-~D~~~~~~~~-~~~~~fD~ 316 (441)
.+.+|||+|||+|.....++.... ..+++|+|+++..++.+++|++.+ ++. .|.+.. .|...+.... ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 568999999999999998887654 478999999999999999999999 774 577754 3433332211 01267999
Q ss_pred EEEcCCCCCCcc
Q 013515 317 ILLDPSCSGSGT 328 (441)
Q Consensus 317 Il~DpPCSg~G~ 328 (441)
|+++||.-.++.
T Consensus 193 ivcNPPf~~s~~ 204 (321)
T PRK11727 193 TLCNPPFHASAA 204 (321)
T ss_pred EEeCCCCcCcch
Confidence 999999876543
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=87.60 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHH--HH---Hh--CCCcEEEEeccCCCCCCCCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IK---LS--GAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~--~~---~~--g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
...+||++|+|.|+.+..+.+. .+..+|+++|+++.+++.+++. +. +. .-++++++.+|+..+..... ++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~--~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS--SL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC--CC
Confidence 3469999999999977766654 3447999999999999999962 21 11 22579999999988654432 67
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
||+|++|+|-..... . -.....+.++.+.+.|+ +|.+|..+. .|.....+
T Consensus 227 YDVIIvDl~DP~~~~----------------------~-----~~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp~~~~~~ 277 (374)
T PRK01581 227 YDVIIIDFPDPATEL----------------------L-----STLYTSELFARIATFLTEDGAFVCQSN--SPADAPLV 277 (374)
T ss_pred ccEEEEcCCCccccc----------------------h-----hhhhHHHHHHHHHHhcCCCcEEEEecC--ChhhhHHH
Confidence 999999987211000 0 00112466777777777 677666533 34455555
Q ss_pred HHHHh
Q 013515 393 IKSVL 397 (441)
Q Consensus 393 V~~~l 397 (441)
+..+.
T Consensus 278 ~~~i~ 282 (374)
T PRK01581 278 YWSIG 282 (374)
T ss_pred HHHHH
Confidence 44444
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.8e-06 Score=82.91 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL 304 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~ 304 (441)
.++.+|||+|||+|.+|..+++.+....+++++|+|++|++.+++++..... -+|..+++|+.+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 3578999999999999999998864347899999999999999999876431 2477789998764
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-07 Score=77.61 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=48.3
Q ss_pred EEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 246 LDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
||+|||+|..+..+.+.. +..+++++|+|+.+++.+++++...+..+......+..+...... .++||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP-PESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC-----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc-ccccceehh
Confidence 799999999999999886 558999999999999999999999876666666655555443321 158999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=84.77 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.+||++|+|.|+.+..++... +..+++++|+++..++.+++++...+ -.+++++.+|+..+..... ++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~--~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTE--NTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCC--CCccE
Confidence 34599999999999888887653 34689999999999999999886643 2468888889876543322 68999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKS 395 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~ 395 (441)
|++|++-. .|.. .. -...+.++.+.+.|+ +|.++..+|+.. -+...+..
T Consensus 149 Ii~D~~~~-~~~~----------------------~~-----l~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~ 198 (270)
T TIGR00417 149 IIVDSTDP-VGPA----------------------ET-----LFTKEFYELLKKALNEDGIFVAQSESPW--IQLELITD 198 (270)
T ss_pred EEEeCCCC-CCcc----------------------cc-----hhHHHHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHH
Confidence 99998732 1110 00 011355666767676 788888766533 33444444
Q ss_pred H
Q 013515 396 V 396 (441)
Q Consensus 396 ~ 396 (441)
+
T Consensus 199 ~ 199 (270)
T TIGR00417 199 L 199 (270)
T ss_pred H
Confidence 3
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=84.08 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=70.6
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.-...++..+++.++++|||+|||+|..|..+++.. ..|+++|+++.+++.+++++.. .++++++++|+..++..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 344556667778889999999999999999999874 4699999999999999988754 36899999999887643
Q ss_pred CCCCCCcc---EEEEcCCC
Q 013515 308 DPAYSEVR---AILLDPSC 323 (441)
Q Consensus 308 ~~~~~~fD---~Il~DpPC 323 (441)
.+| .|+.++|.
T Consensus 91 -----~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 -----DFPKQLKVVSNLPY 104 (253)
T ss_pred -----HcCCcceEEEcCCh
Confidence 345 99999995
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-07 Score=85.05 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
...+||+|||.|.+.+.+|... +...++|+|+...++..+...+.+.|++|+.++++|+..+.......+++|.|.+.=
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 3389999999999999999985 458999999999999999999999999999999999988432111126789998877
Q ss_pred CCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchh
Q 013515 322 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 322 PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~ 400 (441)
|+- |++.. -.+---.|..+|....+.|+ ||.|-..| -++.....+++..
T Consensus 97 PDP------------WpK~r------------H~krRl~~~~fl~~~~~~L~~gG~l~~~T------D~~~y~~~~~~~~ 146 (195)
T PF02390_consen 97 PDP------------WPKKR------------HHKRRLVNPEFLELLARVLKPGGELYFAT------DVEEYAEWMLEQF 146 (195)
T ss_dssp -----------------SGG------------GGGGSTTSHHHHHHHHHHEEEEEEEEEEE------S-HHHHHHHHHHH
T ss_pred CCC------------Ccccc------------hhhhhcCCchHHHHHHHHcCCCCEEEEEe------CCHHHHHHHHHHH
Confidence 732 11100 00000134566666666666 66665544 3455555555432
Q ss_pred c--CCCeEEec
Q 013515 401 M--SFGFQLAT 409 (441)
Q Consensus 401 ~--~~~~~~~~ 409 (441)
. +..|+...
T Consensus 147 ~~~~~~f~~~~ 157 (195)
T PF02390_consen 147 EESHPGFENIE 157 (195)
T ss_dssp HHHSTTEEEE-
T ss_pred HhcCcCeEEcc
Confidence 2 35787653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=83.04 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=58.1
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhc---CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~---~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
.+...++.+|||+|||+|..+..++.... ...+|+++|+++.+++.++++....+ +.+...|+..++..+ +
T Consensus 55 ~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~~~~---~ 128 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELVAEG---E 128 (232)
T ss_pred hcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEecccccccC---C
Confidence 34445678999999999999999887643 23599999999999999988765443 445555555554322 6
Q ss_pred CccEEEE
Q 013515 313 EVRAILL 319 (441)
Q Consensus 313 ~fD~Il~ 319 (441)
+||+|++
T Consensus 129 ~fD~V~~ 135 (232)
T PRK06202 129 RFDVVTS 135 (232)
T ss_pred CccEEEE
Confidence 8999986
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=82.25 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=72.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCCCCCCCCCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~----~v~~~~~D~~~~~~~~~~~ 311 (441)
.+..|.+|||+|||.|-.+.+||++ +..|+|+|+++.+++.+++....... . .+++.+.|+....
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------ 156 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------ 156 (282)
T ss_pred cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------
Confidence 3445788999999999999999998 37999999999999999998433222 1 2445555555433
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+.||.|+ || +-+...... .+++...+++++ +|.|+-||-
T Consensus 157 ~~fDaVv----cs---------------------------evleHV~dp-~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 157 GKFDAVV----CS---------------------------EVLEHVKDP-QEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred cccceee----eH---------------------------HHHHHHhCH-HHHHHHHHHHhCCCCceEeeeh
Confidence 4599998 43 112222222 366777777776 688887764
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-06 Score=80.71 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=77.3
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
..-++..+++.+++.||++|+|.|..|..|++.. .+|+|+|+|+..+..+++.+. ...|++++++|+...+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh
Confidence 5667788889999999999999999999999873 689999999999999999876 34689999999999886531
Q ss_pred CCCCccEEEEcCCCCCCc
Q 013515 310 AYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G 327 (441)
..++.|+.+-|++-+.
T Consensus 94 --~~~~~vVaNlPY~Iss 109 (259)
T COG0030 94 --AQPYKVVANLPYNISS 109 (259)
T ss_pred --cCCCEEEEcCCCcccH
Confidence 1579999999987543
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=82.56 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..+..+++.. .++|+++|++++|++.+++.. ..+++|+..++..+ ++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d---~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFRD---KSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCCC---CCEEEEEe
Confidence 47899999999999999998875 369999999999999987631 24678998887654 78999986
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-06 Score=84.96 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+|.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++++..+ ..++.+...|...+. ++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~------~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS------GKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC------CCcC
Confidence 5789999999999999999875 3589999999999999999988753 246778888875542 5799
Q ss_pred EEEE
Q 013515 316 AILL 319 (441)
Q Consensus 316 ~Il~ 319 (441)
.|++
T Consensus 215 ~Vv~ 218 (315)
T PLN02585 215 TVTC 218 (315)
T ss_pred EEEE
Confidence 9974
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=78.56 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~------------~g~~~v~~~~~D~~~~~~~ 307 (441)
.+|.+|||+|||.|.-+..||+. .-.|+|+|+|+.+++.+...... ..-.+|+++++|+.++...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 57889999999999999999975 36899999999999976332110 0113588999999987753
Q ss_pred CCCCCCccEEEE
Q 013515 308 DPAYSEVRAILL 319 (441)
Q Consensus 308 ~~~~~~fD~Il~ 319 (441)
. .+.||.|+-
T Consensus 110 ~--~~~fD~i~D 119 (213)
T TIGR03840 110 D--LGPVDAVYD 119 (213)
T ss_pred c--CCCcCEEEe
Confidence 2 156888853
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-07 Score=83.60 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=93.8
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~ 311 (441)
+....++.|++|||.|.|-|+.++..++. ++.+|+.+|.++.-++.+.-|==..++ .+|+++.+|+.++-.... .
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-D 203 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-D 203 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-c
Confidence 34566788999999999999999887775 456999999999999877544211122 258999999987765432 2
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE-EEEcCCCCChhc
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV-VYSTCSIHQVEN 389 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l-vYsTCS~~~~EN 389 (441)
++||+|+-|||..+... .-.-.++-+.-++.|+ ||.| =|+.-.-..--.
T Consensus 204 ~sfDaIiHDPPRfS~Ag-----------------------------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 204 ESFDAIIHDPPRFSLAG-----------------------------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred cccceEeeCCCccchhh-----------------------------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc
Confidence 68999999999643321 0011233444455555 6654 465443333333
Q ss_pred HHHHHHHhchhcCCCeEEecCCC
Q 013515 390 EDVIKSVLPIAMSFGFQLATPFP 412 (441)
Q Consensus 390 e~vV~~~l~~~~~~~~~~~~~~~ 412 (441)
-++-..+.+...+-+|+++....
T Consensus 255 ~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 255 LDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CChhHHHHHHHHhcCceeeeeeh
Confidence 33433444444567888665443
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=79.28 Aligned_cols=71 Identities=23% Similarity=0.337 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...+. +++.+..+|+.. .. +.||.|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~---~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LL---GRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---cc---CCcCEEE
Confidence 56889999999999999998875 25699999999999999999988877 578899998432 12 6799998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 133 ~ 133 (230)
T PRK07580 133 C 133 (230)
T ss_pred E
Confidence 5
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=88.11 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=78.9
Q ss_pred CChhhhcCcccccchh---hHHHHH---HhCC-CCCCEEEEEcCCCchHHHHHHHHhc----------------------
Q 013515 214 VHPLIVNGCVFLQGKA---SSMVAA---ALAP-KPGWKVLDACSAPGNKTVHLAALMK---------------------- 264 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~s---s~l~~~---~l~~-~~g~~VLDl~ag~G~kt~~la~~~~---------------------- 264 (441)
..++++-||=..+..+ ..+++. +.+. ++++.++|-+||+|++.+..|.+..
T Consensus 156 g~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~ 235 (702)
T PRK11783 156 GESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEA 235 (702)
T ss_pred CCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHH
Confidence 3455666654333322 123332 3333 5689999999999999888776421
Q ss_pred -------------------CCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 265 -------------------GKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 265 -------------------~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
...+|+|+|+++.+++.+++|++.+|+. .|.+.++|+.++..... .+.||.|+.|||.
T Consensus 236 ~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-~~~~d~IvtNPPY 313 (702)
T PRK11783 236 LWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-KGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-cCCCCEEEECCCC
Confidence 1136999999999999999999999995 48999999998764431 1469999999996
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-06 Score=78.64 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=99.8
Q ss_pred hHHHHHHhC------CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 230 SSMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 230 s~l~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
|-|++.++. ++||.+||=+||++|..-.|+++.+++.+-|||+|.+...=..+...+++. +||..+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 666666654 689999999999999999999999999999999999987766666655543 588899999987
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH-HHHHhCCCC-Cc-EEEE-
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA-LRHALSFPG-VE-RVVY- 379 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l-L~~a~~~~~-~G-~lvY- 379 (441)
...---...-+|+|+.|.+ .||. ..| .-+|-.||+ +| +++|
T Consensus 217 P~KYRmlVgmVDvIFaDva---------qpdq--------------------------~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA---------QPDQ--------------------------ARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred chheeeeeeeEEEEeccCC---------Cchh--------------------------hhhhhhhhhhhhccCCeEEEEE
Confidence 5532111246899999999 4442 222 334555777 55 4444
Q ss_pred -EcCCCCChhcHHHHHHHhchhc
Q 013515 380 -STCSIHQVENEDVIKSVLPIAM 401 (441)
Q Consensus 380 -sTCS~~~~ENe~vV~~~l~~~~ 401 (441)
+.|+-....+|.|.+.-.+...
T Consensus 262 kancidstv~ae~vFa~Ev~klq 284 (317)
T KOG1596|consen 262 KANCIDSTVFAEAVFAAEVKKLQ 284 (317)
T ss_pred ecccccccccHHHHHHHHHHHHH
Confidence 5798889999999877665433
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=79.93 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=67.4
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
..+.-++++ ..+.+-.+|.|+|||||..|-.++++.+ ...|+++|-|+.|++.++..+ .++++..+|..++.+
T Consensus 17 RPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p 89 (257)
T COG4106 17 RPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP 89 (257)
T ss_pred CcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC
Confidence 334444443 3345678999999999999999999975 489999999999999986543 578899999999887
Q ss_pred CCCCCCCccEEEEcCC
Q 013515 307 KDPAYSEVRAILLDPS 322 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpP 322 (441)
. ..+|.|+.++-
T Consensus 90 ~----~~~dllfaNAv 101 (257)
T COG4106 90 E----QPTDLLFANAV 101 (257)
T ss_pred C----Cccchhhhhhh
Confidence 6 56788987765
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1e-06 Score=78.52 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+.+.|+|+|+|-.+...|.. +.+|+|++.+|.+...+.+|+.-.|..|++++.+|+.++.. +..|+|++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHH
Confidence 378999999999999888776 46999999999999999999998999999999999998874 45688874
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-06 Score=81.35 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCC--cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~--~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+.+|||+|||+|..+..++..+... ..|+++|+++.+++.++++. .++.+.++|+.+++..+ ++||.|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~---~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFAD---QSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcC---CceeEE
Confidence 456789999999999999998876432 37999999999999987642 46788999998887554 689999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
+.
T Consensus 156 ~~ 157 (272)
T PRK11088 156 IR 157 (272)
T ss_pred EE
Confidence 84
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-06 Score=74.37 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
....++++|||+|..++.+++..++....+|.|+++.+++...+.++.+++ ++.++..|....... +++|+++.+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~----~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN----ESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc----CCccEEEEC
Confidence 367899999999999999999988888899999999999999999999887 477888888765533 789999999
Q ss_pred CCCC
Q 013515 321 PSCS 324 (441)
Q Consensus 321 pPCS 324 (441)
||.-
T Consensus 118 PPYV 121 (209)
T KOG3191|consen 118 PPYV 121 (209)
T ss_pred CCcC
Confidence 9973
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.9e-06 Score=79.95 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCch----HHHHHHHHhcC----CcEEEEEeCCHHHHHHHHHHHH----HhC-----------------
Q 013515 240 KPGWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDTIK----LSG----------------- 290 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~----kt~~la~~~~~----~~~V~a~D~~~~rl~~l~~~~~----~~g----------------- 290 (441)
.++.+|||+|||+|. .+..+++.... ..+|+|+|+|+.+++.+++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 346799999999996 45555554432 4689999999999999987531 001
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 013515 291 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 364 (441)
Q Consensus 291 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 364 (441)
+ .+|.+.++|..+.++.. ++||.|+ |.. ++-. .+ ...|.++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~----crn--vl~y-----------------f~-------~~~~~~~ 224 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPL---GDFDLIF----CRN--VLIY-----------------FD-------EPTQRKL 224 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCcc---CCCCEEE----ech--hHHh-----------------CC-------HHHHHHH
Confidence 1 36888999998866532 6899998 432 2110 00 1234677
Q ss_pred HHHHhCCCC-CcEEEEE
Q 013515 365 LRHALSFPG-VERVVYS 380 (441)
Q Consensus 365 L~~a~~~~~-~G~lvYs 380 (441)
+....+.++ ||.|+-.
T Consensus 225 l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 225 LNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHHHHHHhCCCeEEEEE
Confidence 888888777 6777654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.9e-07 Score=83.24 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC-CCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP-AYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~-~~~~fD~Il 318 (441)
..+.|+|..||.||-|++.+... ..|+++|+|+-++..+++|++-+|+ +.|++++||+.++..... ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 46789999999999999998763 5899999999999999999999999 579999999987663321 013478999
Q ss_pred EcCCCCCCcccc
Q 013515 319 LDPSCSGSGTAA 330 (441)
Q Consensus 319 ~DpPCSg~G~~~ 330 (441)
+-||=+|.|-.+
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999988764
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.3e-07 Score=80.78 Aligned_cols=74 Identities=28% Similarity=0.390 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CC-CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DP-AYSE 313 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~-~~~~ 313 (441)
.+.+|||+||||||+|..+.+..+..++|+|+|+.+. ....++..+.+|+.+.... .. ....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 4589999999999999999988655689999999875 2235677777777543210 00 1158
Q ss_pred ccEEEEcC--CCCC
Q 013515 314 VRAILLDP--SCSG 325 (441)
Q Consensus 314 fD~Il~Dp--PCSg 325 (441)
||.|++|. +|+|
T Consensus 92 ~dlv~~D~~~~~~g 105 (181)
T PF01728_consen 92 FDLVLSDMAPNVSG 105 (181)
T ss_dssp ESEEEE-------S
T ss_pred cceeccccccCCCC
Confidence 99999999 4444
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.5e-06 Score=77.58 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=84.5
Q ss_pred hhhhcCcccccchhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 216 PLIVNGCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 216 ~~~~~g~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
..|.+++......-+......-. --.|.+||-+ |-+..+...+.+.+...+|+.+|++++.++-.++.+++.|++ |
T Consensus 18 ~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i 94 (243)
T PF01861_consen 18 VELDQGYATPETTLRRAALMAERGDLEGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-I 94 (243)
T ss_dssp GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---E
T ss_pred cccccccccHHHHHHHHHHHHhcCcccCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-e
Confidence 45666666665433222211111 1247889854 566666665556666689999999999999999999999997 9
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 374 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~ 374 (441)
+..+.|+++..+..- .++||+++.|||.+-.|+ .-.|..+.+.|++
T Consensus 95 ~~~~~DlR~~LP~~~-~~~fD~f~TDPPyT~~G~---------------------------------~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 95 EAVHYDLRDPLPEEL-RGKFDVFFTDPPYTPEGL---------------------------------KLFLSRGIEALKG 140 (243)
T ss_dssp EEE---TTS---TTT-SS-BSEEEE---SSHHHH---------------------------------HHHHHHHHHTB-S
T ss_pred EEEEecccccCCHHH-hcCCCEEEeCCCCCHHHH---------------------------------HHHHHHHHHHhCC
Confidence 999999998665431 378999999999876664 2457778887773
Q ss_pred -cEEEEEcCCCCCh--hcHHHHHHHhchhcCCCeEEecCCCCC
Q 013515 375 -ERVVYSTCSIHQV--ENEDVIKSVLPIAMSFGFQLATPFPNG 414 (441)
Q Consensus 375 -G~lvYsTCS~~~~--ENe~vV~~~l~~~~~~~~~~~~~~~~~ 414 (441)
|..+|-..|..+. +-=..|++++. +.+|.+...+|++
T Consensus 141 ~g~~gy~~~~~~~~s~~~~~~~Q~~l~---~~gl~i~dii~~F 180 (243)
T PF01861_consen 141 EGCAGYFGFTHKEASPDKWLEVQRFLL---EMGLVITDIIPDF 180 (243)
T ss_dssp TT-EEEEEE-TTT--HHHHHHHHHHHH---TS--EEEEEEEEE
T ss_pred CCceEEEEEecCcCcHHHHHHHHHHHH---HCCcCHHHHHhhh
Confidence 5455666665431 11235777763 4566665554443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-05 Score=76.62 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=77.0
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~f 314 (441)
.+.+-.|.+|||+|||.|+.+..|+.. +...|+|+|.+..-+-..+-.-+-.|.+. +..+..-+.+++. . +.|
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~---~~F 183 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L---GAF 183 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c---CCc
Confidence 344456999999999999999999876 45789999999877665544444445433 3333234455554 2 689
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCCCChhc
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-GVERVVYSTCSIHQVEN 389 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~-~~G~lvYsTCS~~~~EN 389 (441)
|.|++ +||+.++.+. ...|......+ +||.||.-|--+.-+++
T Consensus 184 DtVF~------MGVLYHrr~P--------------------------l~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 184 DTVFS------MGVLYHRRSP--------------------------LDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred CEEEE------eeehhccCCH--------------------------HHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 99994 8998764321 23344444434 58999988776665554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=74.12 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=89.7
Q ss_pred cccccchhhHHHHHHhCCCC--CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 222 CVFLQGKASSMVAAALAPKP--GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~~--g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
...+|-+-+.-+.++|+..+ ..-|||+|||+|-.+..+.+- .-..+++|+|+.||+.+.+. .+.- .++.+
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~eg---dlil~ 100 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELEG---DLILC 100 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhhc---Ceeee
Confidence 35778777777778887665 678999999999888776553 35679999999999999862 2211 25566
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
|.-...+..+ +.||.+|. -|..-.+.+ -|... | ....++.. ....-+..++ ++.-|
T Consensus 101 DMG~Glpfrp--GtFDg~IS---ISAvQWLcn-A~~s~--~--------~P~~Rl~~-------FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 101 DMGEGLPFRP--GTFDGVIS---ISAVQWLCN-ADKSL--H--------VPKKRLLR-------FFGTLYSCLKRGARAV 157 (270)
T ss_pred ecCCCCCCCC--CccceEEE---eeeeeeecc-cCccc--c--------ChHHHHHH-------HhhhhhhhhccCceeE
Confidence 6554333322 78998874 222211111 01000 0 01122211 1122233333 66666
Q ss_pred EEcCCCCChhcHHHHHHHhchhcCCCe
Q 013515 379 YSTCSIHQVENEDVIKSVLPIAMSFGF 405 (441)
Q Consensus 379 YsTCS~~~~ENe~vV~~~l~~~~~~~~ 405 (441)
+- +-.||+++++.+++.+...+|
T Consensus 158 ~Q----fYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 158 LQ----FYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred EE----ecccchHHHHHHHHHHHhhcc
Confidence 53 678999999999976655554
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-06 Score=74.69 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEE-EEEeCCHHHHHHHHHHHHHhC----------CCcEEEEecc
Q 013515 234 AAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VACELNKERVRRLKDTIKLSG----------AANIEVLHGD 300 (441)
Q Consensus 234 ~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V-~a~D~~~~rl~~l~~~~~~~g----------~~~v~~~~~D 300 (441)
..+|+ .+||-..||+|+|+|..|..++.+++..|.+ +++|..++.++..++|++..- ...+.++.+|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 34566 7899999999999999999999988877665 999999999999999998643 1357888999
Q ss_pred CCCCCCCCCCCCCccEEEEcCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpP 322 (441)
.+...++. .+||+|.+-+-
T Consensus 153 gr~g~~e~---a~YDaIhvGAa 171 (237)
T KOG1661|consen 153 GRKGYAEQ---APYDAIHVGAA 171 (237)
T ss_pred ccccCCcc---CCcceEEEccC
Confidence 99887664 78999998654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-05 Score=70.52 Aligned_cols=154 Identities=19% Similarity=0.258 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCC------CCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLD------PKDPAYS 312 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~------~~~~~~~ 312 (441)
.|+++|||+||+||..+...-+..++.|.|.++|+-. + ..+..+.++.+ |+.+.. ...+ ..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~~Ga~~i~~~dvtdp~~~~ki~e~lp-~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPPEGATIIQGNDVTDPETYRKIFEALP-NR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--cCCCCcccccccccCCHHHHHHHHHhCC-CC
Confidence 5799999999999999999999998899999999852 1 11233445555 666532 1112 25
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
.+|+||.|.---.+|+- ..|-..+..+-...|.-|+.++. +|.+| |-+..-+.+.
T Consensus 136 ~VdvVlSDMapnaTGvr---------------------~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~ 191 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVR---------------------IRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEA 191 (232)
T ss_pred cccEEEeccCCCCcCcc---------------------hhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchH
Confidence 78999999887777752 23344666777788888888766 57665 6666666665
Q ss_pred HHHHHhchhcCCCeEEec-CCCCCCCccccccccceeeeeccc
Q 013515 392 VIKSVLPIAMSFGFQLAT-PFPNGTAEASQFLKALSIYFEPIQ 433 (441)
Q Consensus 392 vV~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~p~~ 433 (441)
-.++-|.. .|+-+. ..|.-.+..+.-..-++..|-+.+
T Consensus 192 ~l~r~l~~----~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~~ 230 (232)
T KOG4589|consen 192 LLQRRLQA----VFTNVKKVKPDASRDESAETYLVCLNFKGNV 230 (232)
T ss_pred HHHHHHHH----HhhhcEeeCCccccccccceeeeeeeccCcC
Confidence 55555532 233222 235444444444333445555543
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.18 E-value=7e-07 Score=87.22 Aligned_cols=94 Identities=27% Similarity=0.401 Sum_probs=67.8
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DP 309 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~ 309 (441)
+...|.++++..++|+.-|.||+|..+.+..++ ++|+|+|.|+.+++.++++++..+ +++.++++++.++... ..
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHcc
Confidence 456778999999999999999999999998877 999999999999999998887653 5799999999887632 11
Q ss_pred CCCCccEEEEcCCCCCCcc
Q 013515 310 AYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~ 328 (441)
...++|.||+|-.+|..-.
T Consensus 90 ~~~~~dgiL~DLGvSS~Ql 108 (310)
T PF01795_consen 90 GINKVDGILFDLGVSSMQL 108 (310)
T ss_dssp TTS-EEEEEEE-S--HHHH
T ss_pred CCCccCEEEEccccCHHHh
Confidence 2368999999999987543
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=77.73 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g--~--~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
....+||++|+|.|+.+..+++. .+..+|+.+|+++..++.+++.+...+ . ++++++.+|+..+....+ .++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CCCCC
Confidence 34679999999999999888876 344689999999999999999987642 2 479999999876543221 15799
Q ss_pred EEEEcCCC
Q 013515 316 AILLDPSC 323 (441)
Q Consensus 316 ~Il~DpPC 323 (441)
+|++|.+-
T Consensus 168 vIi~D~~d 175 (308)
T PLN02366 168 AIIVDSSD 175 (308)
T ss_pred EEEEcCCC
Confidence 99999863
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.1e-05 Score=71.92 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---------------CcEEEEeccCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------------ANIEVLHGDFL 302 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---------------~~v~~~~~D~~ 302 (441)
.+.++.+|||+|||.|.-+.+||+. .-.|+|+|+++.+++.+.. +.|+ .+|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456889999999999999999985 3689999999999998642 2222 46888999999
Q ss_pred CCCCCCCCCCCccEEE
Q 013515 303 NLDPKDPAYSEVRAIL 318 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il 318 (441)
++.... ...||.|+
T Consensus 108 ~l~~~~--~~~fd~v~ 121 (218)
T PRK13255 108 ALTAAD--LADVDAVY 121 (218)
T ss_pred CCCccc--CCCeeEEE
Confidence 886543 25788886
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-06 Score=80.65 Aligned_cols=185 Identities=20% Similarity=0.213 Sum_probs=115.3
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHH-------HHHHHHHHhCCC--cEEEEec
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-------RLKDTIKLSGAA--NIEVLHG 299 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~-------~l~~~~~~~g~~--~v~~~~~ 299 (441)
=|.+.+....++||+.|+|=+.|+|+.-...|.. ++.|++.||+-.++. -.+.|++++|.. -+.++.+
T Consensus 196 LSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 4677777888899999999999999987766665 379999999988776 467899999963 2567889
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCC--CCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcE
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHA--SGHTADPTEMERLNKLSAFQKKALRHALSFPG-VER 376 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~--~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~ 376 (441)
|+.+.+-... ..||.|++|||.. .-...++...+-.... +....+-........+..+-..+|.-+.+.+. ||+
T Consensus 273 D~sn~~~rsn--~~fDaIvcDPPYG-VRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggr 349 (421)
T KOG2671|consen 273 DFSNPPLRSN--LKFDAIVCDPPYG-VREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGR 349 (421)
T ss_pred cccCcchhhc--ceeeEEEeCCCcc-hhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCce
Confidence 9988775442 6899999999972 1111111110000000 00000000112233556666778888888766 899
Q ss_pred EEEEcCCCCChhcHHHHHHHhchhcCCCeEE----ecCCCCCCCccccccccc
Q 013515 377 VVYSTCSIHQVENEDVIKSVLPIAMSFGFQL----ATPFPNGTAEASQFLKAL 425 (441)
Q Consensus 377 lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 425 (441)
+|+= .|.-+|+.....+. .++.+++ +..+..|.++.-+..++.
T Consensus 350 lv~w----~p~~~e~~~~~~~P--~h~~lsl~~ns~q~~~~~srrllt~~k~~ 396 (421)
T KOG2671|consen 350 LVFW----LPTITEEYGEDDIP--SHPYLSLIYNSEQPFTHWSRRLLTYQKLP 396 (421)
T ss_pred EEEe----cCchhhccCcccCC--CCcchhhhhhhccccchhhhhheeeeecc
Confidence 9853 33444444444342 2444444 334557877776655443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=83.11 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-------~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~--~~~~~~ 312 (441)
+.+|||.|||+|++...++..+.. ...++++|+++..+..++.++..++.-.+.+.+.|+..... .....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 458999999999999999887632 25789999999999999999988763234556666543221 111125
Q ss_pred CccEEEEcCCCCCCc
Q 013515 313 EVRAILLDPSCSGSG 327 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G 327 (441)
.||+|+.+||....-
T Consensus 112 ~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 112 LFDIVITNPPYGRLK 126 (524)
T ss_pred cccEEEeCCCccccC
Confidence 799999999986543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.5e-06 Score=71.85 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=71.4
Q ss_pred hhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
.-+.++..++. ..++.+|||+|||.|..+..++.. + .+++++|+++.+++. .++.....+......
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH----------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc
Confidence 34455565664 577899999999999999988665 2 499999999999987 223333333333222
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.. ++||.|++- +++-.-+| -..+|....++++ +|.++.++-.
T Consensus 75 ~~---~~fD~i~~~------~~l~~~~d--------------------------~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 75 PD---GSFDLIICN------DVLEHLPD--------------------------PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp HS---SSEEEEEEE------SSGGGSSH--------------------------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cc---cchhhHhhH------HHHhhccc--------------------------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 22 689999962 22221111 1477888888887 6777766544
|
... |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=77.76 Aligned_cols=94 Identities=23% Similarity=0.380 Sum_probs=80.9
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 310 (441)
++..|.++|+...+|..-|-||+|-.+...+++.++++|+|.|+.+++.+++.+..++ +++.++++.|.++..... .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 4567889999999999999999999999998888999999999999999999999887 689999999887764321 1
Q ss_pred CCCccEEEEcCCCCCCc
Q 013515 311 YSEVRAILLDPSCSGSG 327 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G 327 (441)
.+++|.||+|-.-|+.-
T Consensus 94 i~~vDGiL~DLGVSS~Q 110 (314)
T COG0275 94 IGKVDGILLDLGVSSPQ 110 (314)
T ss_pred CCceeEEEEeccCCccc
Confidence 36899999998877653
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.9e-06 Score=83.65 Aligned_cols=104 Identities=29% Similarity=0.309 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~--v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+-+|||.-||+|--++-++.-+.+..+|+++|+++++++.+++|++.+|+.. +++.+.|+..+-... ...||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~--~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR--QERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS--TT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc--cccCCEEEe
Confidence 4589999999999999999887666899999999999999999999999965 889999998765321 268999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
||= |+- ...|+.|++.++-|.+++.|||
T Consensus 128 DPf--GSp----------------------------------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 DPF--GSP----------------------------------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp --S--S------------------------------------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCC--CCc----------------------------------cHhHHHHHHHhhcCCEEEEecc
Confidence 986 221 2568889887776788899988
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00034 Score=73.57 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=88.9
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC---CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEE
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAA-NIEV 296 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~---~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~ 296 (441)
|.|+--..-+.+++.++.|++..+|+|-|||+|+.-+..+..+.. ...+++.|+++..+..++-|+--.|+. ++..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 666665678899999999999999999999999999998888853 367999999999999999999999986 4667
Q ss_pred EeccCCCCCCCCC--CCCCccEEEEcCCCCCCccc
Q 013515 297 LHGDFLNLDPKDP--AYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 297 ~~~D~~~~~~~~~--~~~~fD~Il~DpPCSg~G~~ 329 (441)
.++|...-+.... ....||.|+.+||-|+.|..
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~ 280 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWG 280 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccc
Confidence 7777665553311 12679999999999977654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.7e-05 Score=74.04 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+||.+|+|.|+.+..+.+.. +..+|+++|+++..++.+++.+...+ -++++++.+|+..+..... ++||+|
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~--~~yDvI 180 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRD--EKFDVI 180 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCC--CCccEE
Confidence 4689999999999888777652 34689999999999999999886432 2579999999998764432 689999
Q ss_pred EEcCC
Q 013515 318 LLDPS 322 (441)
Q Consensus 318 l~DpP 322 (441)
++|.+
T Consensus 181 i~D~~ 185 (336)
T PLN02823 181 IGDLA 185 (336)
T ss_pred EecCC
Confidence 99975
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4e-05 Score=72.52 Aligned_cols=85 Identities=27% Similarity=0.358 Sum_probs=70.1
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~ 311 (441)
++.-.++++++.||++|-|||..|..|.+. +.+|+|+|+|+.++..+.++.+.... ...+++++|+...+.
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----- 121 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----- 121 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----
Confidence 334456789999999999999999998887 47999999999999999998875433 358899999988763
Q ss_pred CCccEEEEcCCCCC
Q 013515 312 SEVRAILLDPSCSG 325 (441)
Q Consensus 312 ~~fD~Il~DpPCSg 325 (441)
..||.++.+-|.--
T Consensus 122 P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQI 135 (315)
T ss_pred cccceeeccCCccc
Confidence 34899999988743
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=71.21 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.||.+|||+|||.|..-.+|.+. .....+++|++++.+....+ .|+ .++++|..+-....+ ..+||.|+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rGv---~Viq~Dld~gL~~f~-d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RGV---SVIQGDLDEGLADFP-DQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cCC---CEEECCHHHhHhhCC-CCCccEEe
Confidence 467999999999999988888775 34789999999998776544 354 478898876543322 27899998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 81 l 81 (193)
T PF07021_consen 81 L 81 (193)
T ss_pred h
Confidence 5
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=82.81 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+..+||+|||.|.+++++|... +...++|+|++...+..+...+.+.|++|+.+++.|+..+....+ ..++|.|.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~-~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP-NNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC-cccccEEEE
Confidence 347799999999999999999985 457899999999999999999999999999999988764442221 156899988
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
.=|
T Consensus 424 ~FP 426 (506)
T PRK01544 424 LFP 426 (506)
T ss_pred ECC
Confidence 777
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.4e-05 Score=72.22 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=72.2
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
-...++..+++.+++.|||+|+|+|..|..|+... .+|+++|+++..++.+++.+. .-++++++++|+..+....
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHH
Confidence 35566678888899999999999999999998874 799999999999999998776 3468999999999887542
Q ss_pred CCCCCccEEEEcCCC
Q 013515 309 PAYSEVRAILLDPSC 323 (441)
Q Consensus 309 ~~~~~fD~Il~DpPC 323 (441)
........|+.+.|.
T Consensus 93 ~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY 107 (262)
T ss_dssp HCSSSEEEEEEEETG
T ss_pred hhcCCceEEEEEecc
Confidence 101245688888885
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=67.77 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeccCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI------------KLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~------------~~~g~~~v~~~~~D~~~~~~ 306 (441)
+.+|.+||+.+||.|.-..+||+. +-.|+|+|+|+..++.+.+.. ....-.+|++.++|+.+++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 346789999999999999999986 357999999999999875521 01112468999999999874
Q ss_pred CCCCCCCccEEEE
Q 013515 307 KDPAYSEVRAILL 319 (441)
Q Consensus 307 ~~~~~~~fD~Il~ 319 (441)
.....+.||.|+-
T Consensus 118 ~~~~~~~fD~VyD 130 (226)
T PRK13256 118 IANNLPVFDIWYD 130 (226)
T ss_pred cccccCCcCeeee
Confidence 2212357898753
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.6e-05 Score=74.98 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=61.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+|++||.||.+.-+... +-..|+++|+++.+++..+.|... . ++++|+.++..... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~-~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDF-IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhc-CCCCCEEEeCCCC
Confidence 6899999999998877654 345789999999999999888642 1 56788888775431 2579999999999
Q ss_pred CCCccccc
Q 013515 324 SGSGTAAE 331 (441)
Q Consensus 324 Sg~G~~~~ 331 (441)
.+.....+
T Consensus 73 q~fS~ag~ 80 (275)
T cd00315 73 QPFSIAGK 80 (275)
T ss_pred hhhhHHhh
Confidence 98776543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.4e-05 Score=68.38 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~Il 318 (441)
.++++|||+|||+|..+..++... ...++++|+++++++.++. . +++++.+|+.+ +++.. .++||.|+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~~~--~~sfD~Vi 80 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEAFP--DKSFDYVI 80 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccccC--CCCcCEEE
Confidence 468899999999999998887653 3578999999999988754 2 35677888865 22211 16799999
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
+..+
T Consensus 81 ~~~~ 84 (194)
T TIGR02081 81 LSQT 84 (194)
T ss_pred EhhH
Confidence 7543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.2e-05 Score=72.90 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 281 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~ 281 (441)
.+|..|||+|||||++|..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36889999999999999999986 45799999999987764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=66.15 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=59.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+|+|+|+|.|.=++.+|-.. +..+++-+|...+++.-+++....+|++|++++++++.+ ... ..+||.|+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~---~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEY---RESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTT---TT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-ccc---CCCccEEEe
Confidence 89999999999999998775 568999999999999999999999999999999999988 211 268999985
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=70.10 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~----~~v~~~~~D~~~~~~~~~ 309 (441)
+.++.+ ...+||=+|.|.|+.+..+.+. .+-.+|+++|+++..++.+++.+..... ++++++.+|+..+.....
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 334443 5779999999999998888765 3346899999999999999998876432 479999999988765543
Q ss_pred CCC-CccEEEEcCCC
Q 013515 310 AYS-EVRAILLDPSC 323 (441)
Q Consensus 310 ~~~-~fD~Il~DpPC 323 (441)
+ +||+|++|.+-
T Consensus 148 --~~~yDvIi~D~~d 160 (246)
T PF01564_consen 148 --EEKYDVIIVDLTD 160 (246)
T ss_dssp --ST-EEEEEEESSS
T ss_pred --CCcccEEEEeCCC
Confidence 4 89999999984
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=72.25 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.+|.+|||+||+|||.|-.+.+. +.+|+|+|..+ +...+. .-.+|+...+|...+.+. ...+|.|+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPP---RKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCC---CCCCCEEE
Confidence 368999999999999999999886 35999999554 222222 235788888888776653 26899999
Q ss_pred EcCCCC
Q 013515 319 LDPSCS 324 (441)
Q Consensus 319 ~DpPCS 324 (441)
+|.-|.
T Consensus 276 cDmve~ 281 (357)
T PRK11760 276 CDMVEK 281 (357)
T ss_pred EecccC
Confidence 999873
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00024 Score=62.67 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=68.9
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-- 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-- 307 (441)
+..++...++..|-.||++|.|+|-+|-.+.+.......++++|.+++....+.+.. +.+.++++|+.++...
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHh
Confidence 344455567888999999999999999999888766789999999999999887654 3456889999887622
Q ss_pred CCCCCCccEEEEcCC
Q 013515 308 DPAYSEVRAILLDPS 322 (441)
Q Consensus 308 ~~~~~~fD~Il~DpP 322 (441)
......||.|++-.|
T Consensus 112 e~~gq~~D~viS~lP 126 (194)
T COG3963 112 EHKGQFFDSVISGLP 126 (194)
T ss_pred hcCCCeeeeEEeccc
Confidence 112256899998777
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=70.30 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.|..|||+|||+|-.+...++. ++.+|+|+|.+ +|.+-++..++.+.+ ++|.++.|.++++... +++|+|+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEe
Confidence 4789999999999998877765 56899999987 688888888887766 6799999999887654 67899988
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
.|=
T Consensus 250 EPM 252 (517)
T KOG1500|consen 250 EPM 252 (517)
T ss_pred ccc
Confidence 774
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=62.86 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=52.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
.|||+|||.|..+..++... +..+|+++|.++..++.++++++.+++.++.+++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999998874 446999999999999999999999998888888877654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=75.03 Aligned_cols=77 Identities=23% Similarity=0.307 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCchHHHHHHHH---hcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~---~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+..|+|+|||+|-.+...++. .+.+.+|+|+|.++.+...+++.++.+|. ++|+++++|.+++... +++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 568999999999987655443 23457999999999999999988888888 6799999999998865 589999
Q ss_pred EEcCC
Q 013515 318 LLDPS 322 (441)
Q Consensus 318 l~DpP 322 (441)
+...=
T Consensus 263 VSElL 267 (448)
T PF05185_consen 263 VSELL 267 (448)
T ss_dssp EE---
T ss_pred EEecc
Confidence 97653
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00034 Score=60.17 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCch-HHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~-kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+...+....+.+|+|+|+|+|. .+..|++. ...|+|+|+++.+++.++++ + +.++.+|..+..... +
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~--y 75 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI--Y 75 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH--H
Confidence 3334444457899999999996 66667654 36999999999988877654 3 468889998766553 4
Q ss_pred CCccEEEE
Q 013515 312 SEVRAILL 319 (441)
Q Consensus 312 ~~fD~Il~ 319 (441)
..+|.|..
T Consensus 76 ~~a~liys 83 (134)
T PRK04148 76 KNAKLIYS 83 (134)
T ss_pred hcCCEEEE
Confidence 77899964
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=65.73 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+.+|+|+|+|.|-=++.+|-. .+..+|+-+|...+++.-++...+.+|++|++++++.++++..... . ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~--~-~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKK--Q-YDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccc--c-CcEEEe
Confidence 689999999999999999844 4567799999999999999999999999999999999998876532 1 899974
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=62.82 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=95.1
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEe
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANI-EVLH 298 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v-~~~~ 298 (441)
-...+|..-...+..+-.-...-+|||+|||+|.--+-+....+. ...|.-.|.++..++..++.++..|+.+| ++.+
T Consensus 115 Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~ 194 (311)
T PF12147_consen 115 RKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQ 194 (311)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEe
Confidence 334444333333333333334568999999999987777665443 36899999999999999999999999876 9999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-CCcEE
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-GVERV 377 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~-~~G~l 377 (441)
+|+.+...-.......+.+++ +|.+---||. + +. ...|......+ +||+|
T Consensus 195 ~dAfd~~~l~~l~p~P~l~iV------sGL~ElF~Dn----------------~----lv---~~sl~gl~~al~pgG~l 245 (311)
T PF12147_consen 195 GDAFDRDSLAALDPAPTLAIV------SGLYELFPDN----------------D----LV---RRSLAGLARALEPGGYL 245 (311)
T ss_pred cCCCCHhHhhccCCCCCEEEE------ecchhhCCcH----------------H----HH---HHHHHHHHHHhCCCcEE
Confidence 998875422111124577775 4554332321 1 11 12233333334 58999
Q ss_pred EEEcCCCCChhcHHHHHHHhc
Q 013515 378 VYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 378 vYsTCS~~~~ENe~vV~~~l~ 398 (441)
||+.--.||.- +.|+.+|.
T Consensus 246 IyTgQPwHPQl--e~IAr~Lt 264 (311)
T PF12147_consen 246 IYTGQPWHPQL--EMIARVLT 264 (311)
T ss_pred EEcCCCCCcch--HHHHHHHh
Confidence 99887888853 67888884
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0003 Score=65.34 Aligned_cols=91 Identities=24% Similarity=0.349 Sum_probs=57.1
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEeccCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-------LSGA--ANIEVLHGDFLN 303 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~-------~~g~--~~v~~~~~D~~~ 303 (441)
+...+++.+++..+|+|||.|...++.|... +..+++++|+.+...+.++...+ .+|. ..+.+..+|+.+
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 3456788999999999999999988887664 55679999999998877665443 3454 468888999876
Q ss_pred CCCCCCCCCCccEEEEcCCCC
Q 013515 304 LDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCS 324 (441)
.+.........|+|+++-=|.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCF 133 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT
T ss_pred cHhHhhhhcCCCEEEEecccc
Confidence 542111123569999987764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00027 Score=69.92 Aligned_cols=78 Identities=26% Similarity=0.295 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
..+|+|.-+|+|--++-++--.+. .+|+.+|+++++++.+++|++.+...+..+++.|+..+-.... ..||+|=+||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~--~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELH--RAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcC--CCccEEecCC
Confidence 779999999999999998877654 3899999999999999999999955566777788877665542 6799999998
Q ss_pred C
Q 013515 322 S 322 (441)
Q Consensus 322 P 322 (441)
=
T Consensus 130 F 130 (380)
T COG1867 130 F 130 (380)
T ss_pred C
Confidence 6
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00032 Score=65.82 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=62.0
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCC
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNL 304 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~------------~g~~~v~~~~~D~~~~ 304 (441)
+...++.+||+.+||.|.-...||+. .-.|+|+|+++.+++.+.+.... ....+|+++++|+..+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 44677889999999999999999986 36999999999999988332211 1123689999999998
Q ss_pred CCCCCCCCCccEEEEcCCCCCCccc
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
..... ++||.|+= |..+-++
T Consensus 110 ~~~~~--g~fD~iyD---r~~l~Al 129 (218)
T PF05724_consen 110 PPEDV--GKFDLIYD---RTFLCAL 129 (218)
T ss_dssp GGSCH--HSEEEEEE---CSSTTTS
T ss_pred Chhhc--CCceEEEE---ecccccC
Confidence 86642 68999963 4444444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00041 Score=65.26 Aligned_cols=88 Identities=30% Similarity=0.389 Sum_probs=60.0
Q ss_pred hHHHHHHhCCCCCC--EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----C-----CcEEEEe
Q 013515 230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----A-----ANIEVLH 298 (441)
Q Consensus 230 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~-----~~v~~~~ 298 (441)
...++.++++++|. +|||+.+|-|.=++.+|.. + ++|+++|.|+-....++.-+++.. . .+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 45677778877774 9999999999999999875 3 589999999998888887776542 1 3699999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
+|..++.... ..+||+|.+||=
T Consensus 139 ~d~~~~L~~~--~~s~DVVY~DPM 160 (234)
T PF04445_consen 139 GDALEYLRQP--DNSFDVVYFDPM 160 (234)
T ss_dssp S-CCCHCCCH--SS--SEEEE--S
T ss_pred CCHHHHHhhc--CCCCCEEEECCC
Confidence 9999876521 278999999996
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00045 Score=67.93 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
-.|..|||+|||+|-.++..|+. ++.+|+|+|-+.-. +.+++.+..+|+.+ |+++.+.+.++... .+++|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEe
Confidence 35889999999999999887776 46899999988654 99999999999965 88899988877433 37889997
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00085 Score=61.25 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=83.3
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~~~~~f 314 (441)
++....-..||++|||||.---..-. .+...|+++|.++.|-+.+.+.++.....++. +++++.++++.-. ..++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--DGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--cCCe
Confidence 34444445789999999975433321 24579999999999999999999887666777 9999999998332 1789
Q ss_pred cEEEEc-CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 315 RAILLD-PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 315 D~Il~D-pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
|.|+.- .=||-. -+.+.|++.-++|+ ||++++--+ -.+.-.-
T Consensus 147 DtVV~TlvLCSve---------------------------------~~~k~L~e~~rlLRpgG~iifiEH---va~~y~~ 190 (252)
T KOG4300|consen 147 DTVVCTLVLCSVE---------------------------------DPVKQLNEVRRLLRPGGRIIFIEH---VAGEYGF 190 (252)
T ss_pred eeEEEEEEEeccC---------------------------------CHHHHHHHHHHhcCCCcEEEEEec---ccccchH
Confidence 998743 124321 12567888888887 687777533 2333344
Q ss_pred HHHHhc
Q 013515 393 IKSVLP 398 (441)
Q Consensus 393 V~~~l~ 398 (441)
..++++
T Consensus 191 ~n~i~q 196 (252)
T KOG4300|consen 191 WNRILQ 196 (252)
T ss_pred HHHHHH
Confidence 455554
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00042 Score=62.69 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.|.+|||+|+|+|--++..+.. +...|++.|+++.....++.|.+.+|+ +|.++..|... .+ ..||.||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~~-----~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-SP-----PAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-CC-----cceeEEEe
Confidence 4899999999999887766554 568999999999999999999999997 68888888765 21 56899986
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.31 E-value=2.4e-05 Score=64.55 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=27.4
Q ss_pred EEEcCCCchHHHHHHHHhcCCc--EEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 246 LDACSAPGNKTVHLAALMKGKG--KIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 246 LDl~ag~G~kt~~la~~~~~~~--~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
|++|++.|..|..+++.+.+.+ +++++|..+. .+..++.+++.++ .+++++.+|..+..+... ..++|.|++|.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence 5789999999999998876654 8999999986 4555566665665 479999999876543321 258999999998
Q ss_pred CCC
Q 013515 323 CSG 325 (441)
Q Consensus 323 CSg 325 (441)
-+.
T Consensus 79 H~~ 81 (106)
T PF13578_consen 79 HSY 81 (106)
T ss_dssp --H
T ss_pred CCH
Confidence 543
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=62.58 Aligned_cols=63 Identities=27% Similarity=0.293 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
...++||+|||-|+.|..|+..+ .+|+|.|.|+.|..++++ .|++ ++ |..++...+ .+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~~---vl--~~~~w~~~~---~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGFT---VL--DIDDWQQTD---FKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCCe---EE--ehhhhhccC---CceEEEe
Confidence 45689999999999999999987 469999999998776644 4653 22 222233222 5799995
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00014 Score=74.24 Aligned_cols=108 Identities=28% Similarity=0.364 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC-CCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP-AYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~-~~~~fD~I 317 (441)
.++-+|||.-+|+|--++..|..+++-+.|+|+|.++..++..++|++.+++. .++..+.|+..+-.... ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45778999999999999999999988899999999999999999999999874 46777788775543221 12579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
=+||= |+- ...|+.|.+.+..|.|++.|||
T Consensus 188 DLDPy--Gs~----------------------------------s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLDPY--GSP----------------------------------SPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecCCC--CCc----------------------------------cHHHHHHHHHhhcCCEEEEEec
Confidence 99986 221 1458999988887778899998
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00017 Score=65.93 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=71.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----C
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----D 308 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~----~ 308 (441)
+.+++.|.+|...+||.-|.||+|..+.+.. +..+++|.|.+|-+.+.++...+.+--..+..+.+.|..++.- .
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 5678899999999999999999999998874 4579999999999999888877543223344455555544311 0
Q ss_pred CCCCCccEEEEcCCCCCCcc
Q 013515 309 PAYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~ 328 (441)
-....||.||+|-.||+.-+
T Consensus 114 l~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred CCcCCcceEEeecCcccccc
Confidence 01257999999999998754
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00083 Score=58.13 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=71.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCC
Q 013515 268 KIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 346 (441)
Q Consensus 268 ~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~ 346 (441)
+|+|+|+.+++++..+++++..|+ ++|++++.+...+....+. +++|.++.+ +|-+.. -|.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-~~v~~~iFN-----LGYLPg-gDk----------- 62 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-GPVDAAIFN-----LGYLPG-GDK----------- 62 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S---EEEEEEE-----ESB-CT-S-T-----------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-CCcCEEEEE-----CCcCCC-CCC-----------
Confidence 699999999999999999999988 5699999888887754331 478998765 554432 121
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC--hhcHHHHHHHhchhcCCCeEEec
Q 013515 347 DPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ--VENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 347 ~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~--~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.+...+..-...|+.|+++++ ||.|+-..=.=|+ .|..+.|.++++......|.+..
T Consensus 63 ------~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~ 122 (140)
T PF06962_consen 63 ------SITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLK 122 (140)
T ss_dssp ------TSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEE
T ss_pred ------CCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEE
Confidence 112223344567888888887 6755544444465 34445566677655566787644
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0031 Score=61.36 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=90.8
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLD 305 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~ 305 (441)
...++.+..+.| .+||=+|-|.|+.+-.+.+... -.+++.+|+++..++.+++.+.... -++++++..|+.++.
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 344445566666 6999999999999999888743 4799999999999999999998765 357899999999887
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
...+ .+||+|++|---- .|-. +. -.+.+..+.+.+.|+ +|.+|.-+-|.
T Consensus 144 ~~~~--~~fDvIi~D~tdp-~gp~----~~-----------------------Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 144 RDCE--EKFDVIIVDSTDP-VGPA----EA-----------------------LFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred HhCC--CcCCEEEEcCCCC-CCcc----cc-----------------------cCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 6653 4799999996521 1210 00 012466777777777 78888775553
Q ss_pred C
Q 013515 385 H 385 (441)
Q Consensus 385 ~ 385 (441)
.
T Consensus 194 ~ 194 (282)
T COG0421 194 F 194 (282)
T ss_pred c
Confidence 3
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00048 Score=68.21 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=58.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC-CccEEEEcCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS-EVRAILLDPS 322 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~-~fD~Il~DpP 322 (441)
+|+|+|||.||.+.-+.+. +-..|.|+|+++.+.+..+.|.. ....+|+.++.... .. .+|+++.-||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~--l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD--LPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH--HHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------cccccccccccccc--ccccceEEEeccC
Confidence 6999999999999888665 23478999999999999999875 57788998877442 13 5899999999
Q ss_pred CCCCccccc
Q 013515 323 CSGSGTAAE 331 (441)
Q Consensus 323 CSg~G~~~~ 331 (441)
|.+.....+
T Consensus 71 CQ~fS~ag~ 79 (335)
T PF00145_consen 71 CQGFSIAGK 79 (335)
T ss_dssp -TTTSTTST
T ss_pred CceEecccc
Confidence 999887754
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0067 Score=59.93 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH--HHhC---C--CcEEEEeccCCCCCCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI--KLSG---A--ANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~--~~~g---~--~~v~~~~~D~~~~~~~~~~~~ 312 (441)
+.-++||=+|.|-|--.-.+.+. +.-++|+-+|++|++++.++++. +..+ . ++++++..|+.++..... +
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--D 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc--c
Confidence 45679999999999777777665 34689999999999999999554 3322 1 469999999998876543 6
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.||.|++|-|-
T Consensus 365 ~fD~vIVDl~D 375 (508)
T COG4262 365 MFDVVIVDLPD 375 (508)
T ss_pred cccEEEEeCCC
Confidence 89999999993
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=60.04 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCC-CCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLD-PKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g---~~~v~~~~~D~~~~~-~~~~~~~~fD 315 (441)
..|.+||++|||+|--++.++.+. +..+|++.|.++ .++.++.|++.++ -.++.+...|..+-. .......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999999888888774 457999999999 9999999999887 246777766654311 1100125799
Q ss_pred EEEE
Q 013515 316 AILL 319 (441)
Q Consensus 316 ~Il~ 319 (441)
.||.
T Consensus 122 ~Ila 125 (173)
T PF10294_consen 122 VILA 125 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9973
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00062 Score=63.08 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+=.++||+|||+|-.+-.+-.+. .++.++|+|..|++.+.+. |+ + +..++|+..+.... ..++||.|
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~-~~er~DLi 192 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL-TQERFDLI 192 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc-cCCcccch
Confidence 3345799999999999998887764 5899999999999988664 22 2 23445554333211 12678888
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
..-==-+.+|. + ..++..+..+++ ||.+.||+-+...+
T Consensus 193 ~AaDVl~YlG~-------------------------------L-e~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 193 VAADVLPYLGA-------------------------------L-EGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred hhhhHHHhhcc-------------------------------h-hhHHHHHHHhcCCCceEEEEecccCCC
Confidence 53111111221 1 234555666666 89999998886555
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=51.55 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHh---cCCcEEEEEeCCHHHHHHHHHHHHHhC--C-CcEEEEeccCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSG--A-ANIEVLHGDFLN 303 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~---~~~~~V~a~D~~~~rl~~l~~~~~~~g--~-~~v~~~~~D~~~ 303 (441)
.+...|+|+|||-|+.+..++.++ ...-+|+++|.++..++.+....+..+ . .++.+..++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 678899999999999999999854 234799999999999999999999887 3 445555554443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=56.00 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.+....+..+..+|+|+|.|.|..+..+++.. +.-+++.+|. |..++.+++ .++|+++.+|+.+ ..+
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~---~~P-- 157 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD---PLP-- 157 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT---CCS--
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHh---hhc--
Confidence 33445566677899999999999999999885 4579999998 778887777 5789999999982 122
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C--cEEEEEcCCCCChh
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V--ERVVYSTCSIHQVE 388 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~--G~lvYsTCS~~~~E 388 (441)
. +|+|++ ..++.. |+.++. ..||+++...++ | |+|+-.-.-+....
T Consensus 158 ~-~D~~~l------~~vLh~-----------------~~d~~~-------~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 158 V-ADVYLL------RHVLHD-----------------WSDEDC-------VKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp S-ESEEEE------ESSGGG-----------------S-HHHH-------HHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred c-ccceee------ehhhhh-----------------cchHHH-------HHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 3 899987 122211 233333 578888888666 5 66655544443333
Q ss_pred c
Q 013515 389 N 389 (441)
Q Consensus 389 N 389 (441)
.
T Consensus 207 ~ 207 (241)
T PF00891_consen 207 T 207 (241)
T ss_dssp S
T ss_pred C
Confidence 3
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.004 Score=57.86 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=80.5
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|.|+||--|.....|.+. +...+++|+|+++.-++.+++++++.|+ +.|.+..+|........ +..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~---e~~d~ivI---- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG---EDVDTIVI---- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG---G---EEEE----
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC---CCCCEEEE----
Confidence 789999999999999886 3446899999999999999999999997 56999999987654331 33688876
Q ss_pred CCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcC
Q 013515 324 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMS 402 (441)
Q Consensus 324 Sg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~ 402 (441)
.|.|- .+-.+||......++ ...+|-+ |--+...+.++|. .
T Consensus 73 AGMGG------------------------------~lI~~ILe~~~~~~~~~~~lILq-----P~~~~~~LR~~L~---~ 114 (205)
T PF04816_consen 73 AGMGG------------------------------ELIIEILEAGPEKLSSAKRLILQ-----PNTHAYELRRWLY---E 114 (205)
T ss_dssp EEE-H------------------------------HHHHHHHHHTGGGGTT--EEEEE-----ESS-HHHHHHHHH---H
T ss_pred ecCCH------------------------------HHHHHHHHhhHHHhccCCeEEEe-----CCCChHHHHHHHH---H
Confidence 24442 123578888766544 3566664 3348889999984 3
Q ss_pred CCeEEec
Q 013515 403 FGFQLAT 409 (441)
Q Consensus 403 ~~~~~~~ 409 (441)
.+|.+..
T Consensus 115 ~gf~I~~ 121 (205)
T PF04816_consen 115 NGFEIID 121 (205)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 5676643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.006 Score=51.43 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.|.+|+|+||+.|..++.++-. ++.+|+|+|.++...+..+++++-+.+-.=-+..+ +++. .+++||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~~---~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWNG---EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---cccc---cCCCcceEEEE
Confidence 4889999999999999988754 67899999999999999999998775411111122 2332 35889999998
Q ss_pred CCCCC
Q 013515 321 PSCSG 325 (441)
Q Consensus 321 pPCSg 325 (441)
|-|
T Consensus 100 --CeG 102 (156)
T PHA01634 100 --CEG 102 (156)
T ss_pred --ccc
Confidence 544
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0074 Score=58.99 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=78.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CC-CcEEEEeccCC-CCCC-CCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GA-ANIEVLHGDFL-NLDP-KDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~-~~v~~~~~D~~-~~~~-~~~~~~~fD~I 317 (441)
.-++||+|+|.-..--.|+.... .=+.+|.|+++..++.|++|++++ ++ +.|+++...-. .+.. -....+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999999887666665554 369999999999999999999999 77 46877654322 2211 11112579999
Q ss_pred EEcCCCCCCccccc-ccCccC------------CCCCCCCCCCcccHHHHHHH--HHHHHHHHHHHhCCCCCcEEEEEcC
Q 013515 318 LLDPSCSGSGTAAE-RLDHLL------------PSHASGHTADPTEMERLNKL--SAFQKKALRHALSFPGVERVVYSTC 382 (441)
Q Consensus 318 l~DpPCSg~G~~~~-~pd~~~------------~~~~~~~~~~~~~~~~~~~l--~~~Q~~lL~~a~~~~~~G~lvYsTC 382 (441)
+++||--.+.-=.. ....+. +...... ...+-+-+- ..+=.++++....+ +.....| ||
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G----~~~El~~~GGEv~FV~rMI~ES~~~-~~~v~Wf-Ts 255 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTG----QSNELWCEGGEVAFVKRMIKESLQL-KDQVRWF-TS 255 (299)
T ss_dssp EE-----SS------------------------------------TTTTHHHHTHHHHHHHHHHHHHHH-GGGEEEE-EE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCC----CcceEEcCCccHHHHHHHHHHHHHh-CCCcEEE-ee
Confidence 99999766542100 000000 0000000 000000000 12334556665543 2356666 57
Q ss_pred CCCChhcHHHHHHHhchh
Q 013515 383 SIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 383 S~~~~ENe~vV~~~l~~~ 400 (441)
-+...+|=.-+...|+..
T Consensus 256 mvgKkssL~~l~~~L~~~ 273 (299)
T PF05971_consen 256 MVGKKSSLKPLKKELKKL 273 (299)
T ss_dssp EESSGGGHHHHHHHHHHT
T ss_pred cccCcccHHHHHHHHHhc
Confidence 889999988888888653
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0018 Score=67.56 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----CCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----PAYSE 313 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~~~~~ 313 (441)
++++..|||+||+||+..-..++.|+..+-|+++|+-|-. .+.++..++.|+..-.-.. -.-.+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4679999999999999999999999888999999987621 2344444455554211000 00134
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
.|+||-|.--+-.|.+ ..+...-+.+-...|+-|..++. ||.+|
T Consensus 111 advVLhDgapnVg~~w---------------------~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNW---------------------VQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CcEEeecCCCccchhH---------------------HHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 6999999754433322 23334444455556666777765 78755
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0019 Score=64.15 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=59.5
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCC
Q 013515 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCS 324 (441)
|+|++||.||.+.-+.+. +-..+.|+|+++.+++..+.|.. + .+..+|+.++.... ...+|+++.-|||.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--IPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--CCCcCEEEecCCCc
Confidence 689999999999887654 33456789999999999988853 2 34568888776433 24689999999999
Q ss_pred CCccccc
Q 013515 325 GSGTAAE 331 (441)
Q Consensus 325 g~G~~~~ 331 (441)
+.....+
T Consensus 71 ~fS~ag~ 77 (315)
T TIGR00675 71 PFSIAGK 77 (315)
T ss_pred ccchhcc
Confidence 9876544
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0026 Score=59.54 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=51.1
Q ss_pred hHHHHHHhCCCCCC-EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 013515 230 SSMVAAALAPKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~-~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~ 307 (441)
+-+.-.+....++. ..+|+|||+|--+..++... .+|+|+|+++.||+.+++.....-. ....+...+...+...
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~ 97 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG 97 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC
Confidence 33444455555665 89999999995555566663 5899999999999987664322111 1122222233333222
Q ss_pred CCCCCCccEEEE
Q 013515 308 DPAYSEVRAILL 319 (441)
Q Consensus 308 ~~~~~~fD~Il~ 319 (441)
.+++|.|++
T Consensus 98 ---e~SVDlI~~ 106 (261)
T KOG3010|consen 98 ---EESVDLITA 106 (261)
T ss_pred ---Ccceeeehh
Confidence 268899863
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0073 Score=53.77 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=37.8
Q ss_pred EEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 270 VACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 270 ~a~D~~~~rl~~l~~~~~~~g---~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+|+|+|+.|++.++++.+..+ ..+|+++++|+.+++..+ ++||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~ 50 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTM 50 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEe
Confidence 479999999999987765322 357999999999987654 68999985
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0031 Score=58.96 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~ 288 (441)
.+..+||+||-+|..|++||..++. ..|+++||++..++.|+++++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 3668999999999999999999865 6899999999999999999874
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0061 Score=56.11 Aligned_cols=59 Identities=19% Similarity=0.371 Sum_probs=42.0
Q ss_pred hhHHHHHHhCC---CCCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHH
Q 013515 229 ASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 229 ss~l~~~~l~~---~~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~ 287 (441)
+|-+....+.. ..+-.++|-|||.|+..+.++-+-++. ..|+|.|+++++++.+++|+.
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 44444444443 334589999999999999887764433 689999999999999998885
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0056 Score=61.16 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
-+|+|+|||.||..+-+... +-.-+.|+|+++.+++..+.|... ..+...|...+....-....+|+|+--||
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence 47999999999999877654 235789999999999999988753 34666777766643211117899999999
Q ss_pred CCCCcccccc
Q 013515 323 CSGSGTAAER 332 (441)
Q Consensus 323 CSg~G~~~~~ 332 (441)
|-+..+..++
T Consensus 77 CQ~FS~aG~r 86 (328)
T COG0270 77 CQDFSIAGKR 86 (328)
T ss_pred CcchhhcCcc
Confidence 9998877554
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.012 Score=54.52 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=73.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhcC----Cc----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----C
Q 013515 243 WKVLDACSAPGNKTVHLAALMKG----KG----KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----P 309 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~----~~----~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~ 309 (441)
.+|.|+||+||..+-.+++.+.. .+ +|+|+|+.+- ..+..|..+++|+....-.. -
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999988753 22 3999998852 23567888899998754210 0
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC----CCC-CcEEEEEcCCC
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS----FPG-VERVVYSTCSI 384 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~----~~~-~G~lvYsTCS~ 384 (441)
..++.|.|++|.----+|+ .++.+. .|.++|.+|+. .++ ||.+| --|
T Consensus 112 ggekAdlVvcDGAPDvTGl-----------------------Hd~DEy--~Q~qLllaAl~i~t~Vlk~Gg~FV---aKi 163 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGL-----------------------HDLDEY--VQAQLLLAALNIATCVLKPGGSFV---AKI 163 (294)
T ss_pred CCCCccEEEeCCCCCcccc-----------------------ccHHHH--HHHHHHHHHHHHHhheecCCCeee---hhh
Confidence 1257899999865433443 222333 46667777665 355 67665 355
Q ss_pred CChhcHHHHH
Q 013515 385 HQVENEDVIK 394 (441)
Q Consensus 385 ~~~ENe~vV~ 394 (441)
+..++...+.
T Consensus 164 fRg~~tslLy 173 (294)
T KOG1099|consen 164 FRGRDTSLLY 173 (294)
T ss_pred hccCchHHHH
Confidence 6666655544
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=56.28 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.|..|+=+| --..|...+.+.+-..+|..+|+++..+....+.++.+|++||+.+.-|.++..+.+- ..+||+++-|
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~-~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL-KRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH-HhhCCeeecC
Confidence 366788777 4444544445555567999999999999999999999999999999999998776542 3689999999
Q ss_pred CCCCCC
Q 013515 321 PSCSGS 326 (441)
Q Consensus 321 pPCSg~ 326 (441)
||-+--
T Consensus 229 PpeTi~ 234 (354)
T COG1568 229 PPETIK 234 (354)
T ss_pred chhhHH
Confidence 996533
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0021 Score=61.81 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~-~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.|+.|.||.||-|++|+ .+... ++..|+|+|.+|..++.++++++.+++ +...++.+|-+...+. ...|+|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~----~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR----LRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc----ccchhee
Confidence 47999999999999999 44332 568999999999999999999999886 3445667787766554 4568886
Q ss_pred Ec
Q 013515 319 LD 320 (441)
Q Consensus 319 ~D 320 (441)
+.
T Consensus 268 LG 269 (351)
T KOG1227|consen 268 LG 269 (351)
T ss_pred ec
Confidence 53
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.017 Score=52.71 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEeccCCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------AANIEVLHGDFLNLDPK 307 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-------~~~v~~~~~D~~~~~~~ 307 (441)
..-.+.|+|||-||....++.+.+ ..-|++.||...-.+-.+++++.++ +.|+.++..++..+.+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn 132 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN 132 (249)
T ss_pred ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc
Confidence 345689999999999999999875 4799999999888888888888776 57888888887766654
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.018 Score=59.99 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------------- 308 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------------- 308 (441)
.-+++|++||.||.+.-+-.. +--.|.++|+++.+.+..+.|... .....++.+|+.++....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999888554 234678999999999998888521 122345566776665210
Q ss_pred -CCCCCccEEEEcCCCCCCcccc
Q 013515 309 -PAYSEVRAILLDPSCSGSGTAA 330 (441)
Q Consensus 309 -~~~~~fD~Il~DpPCSg~G~~~ 330 (441)
.....+|+++.-|||.+..+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0123689999999999887654
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.017 Score=57.30 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNL 304 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~---~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~--~~~D~~~~ 304 (441)
.++..++|+|||.|.||..+.+.+.. ...-+++|+|.+.|+.+.+++..-.++.+.+ +++|+.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45779999999999999998887643 2568999999999999999998444455544 88888664
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.017 Score=57.77 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=72.6
Q ss_pred hHHHHHHhCC----CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC----------CcEE
Q 013515 230 SSMVAAALAP----KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----------ANIE 295 (441)
Q Consensus 230 s~l~~~~l~~----~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~----------~~v~ 295 (441)
|+|+..++.. .++.+|||+|||-||=..-+... +-..++++|++...++.++++.+.+.- -...
T Consensus 47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~ 124 (331)
T PF03291_consen 47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAE 124 (331)
T ss_dssp HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEE
T ss_pred HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhh
Confidence 4555555431 27899999999999977766553 458999999999999999999944221 1355
Q ss_pred EEeccCCCCC--CCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 296 VLHGDFLNLD--PKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 296 ~~~~D~~~~~--~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
++.+|..... ... +....||+|=+= .++ | .. -.+.+.. +.+|.++.+.|
T Consensus 125 f~~~D~f~~~l~~~~~~~~~~FDvVScQ-----Fal---H-------Y~------Fese~~a-------r~~l~Nvs~~L 176 (331)
T PF03291_consen 125 FIAADCFSESLREKLPPRSRKFDVVSCQ-----FAL---H-------YA------FESEEKA-------RQFLKNVSSLL 176 (331)
T ss_dssp EEESTTCCSHHHCTSSSTTS-EEEEEEE-----S-G---G-------GG------GSSHHHH-------HHHHHHHHHTE
T ss_pred eeccccccchhhhhccccCCCcceeehH-----HHH---H-------Hh------cCCHHHH-------HHHHHHHHHhc
Confidence 6777775422 111 112478988421 111 1 00 0123332 56899999988
Q ss_pred C-CcEEEEEcC
Q 013515 373 G-VERVVYSTC 382 (441)
Q Consensus 373 ~-~G~lvYsTC 382 (441)
+ ||+++-+|-
T Consensus 177 k~GG~FIgT~~ 187 (331)
T PF03291_consen 177 KPGGYFIGTTP 187 (331)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 8 676666544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.035 Score=54.21 Aligned_cols=132 Identities=15% Similarity=0.123 Sum_probs=82.6
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLN 303 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~----~v~~~~~D~~~ 303 (441)
|+|+-.+. ++++.|+|||||-||-.+-.-.. +-+.++++||.+--++.++.+.+.+.- + .+.++.+|...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 67777666 57999999999999988776543 457899999999888888888775421 1 25677887654
Q ss_pred CCCCC---CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE
Q 013515 304 LDPKD---PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY 379 (441)
Q Consensus 304 ~~~~~---~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY 379 (441)
-...+ ....+||+|-+-=-| |- ...+.+ .-+.+|.++.+.|+ ||+++-
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~----------------HY-----aFetee-------~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAF----------------HY-----AFETEE-------SARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeE----------------ee-----eeccHH-------HHHHHHHHHHhhcCCCcEEEE
Confidence 32110 001237776321111 10 001222 22467888888887 677665
Q ss_pred EcCCCCChhcHHHHHHHhch
Q 013515 380 STCSIHQVENEDVIKSVLPI 399 (441)
Q Consensus 380 sTCS~~~~ENe~vV~~~l~~ 399 (441)
++ -|-++|-+=|+.
T Consensus 236 Ti------Pdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 236 TI------PDSDVIIKRLRA 249 (389)
T ss_pred ec------CcHHHHHHHHHh
Confidence 42 356777666654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.023 Score=52.37 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=63.6
Q ss_pred HHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
++..+. ..++-.|-|+|||-+..+ +.+.+.-+|..+|+... |-.++..|...+|..+
T Consensus 63 iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~--- 120 (219)
T PF05148_consen 63 IIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLED--- 120 (219)
T ss_dssp HHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S--T---
T ss_pred HHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCcCCC---
Confidence 333443 334579999999999765 44444468999998742 1135679999999776
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-Cc-EEEEEcCCCCChhc
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VE-RVVYSTCSIHQVEN 389 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G-~lvYsTCS~~~~EN 389 (441)
+++|+++.--. =+|+ + | ...|..|.+.|+ +| ..|+-.+|=+. |
T Consensus 121 ~svDv~VfcLS--LMGT------------------n-~------------~~fi~EA~RvLK~~G~L~IAEV~SRf~--~ 165 (219)
T PF05148_consen 121 ESVDVAVFCLS--LMGT------------------N-W------------PDFIREANRVLKPGGILKIAEVKSRFE--N 165 (219)
T ss_dssp T-EEEEEEES-----SS--------------------H------------HHHHHHHHHHEEEEEEEEEEEEGGG-S---
T ss_pred CceeEEEEEhh--hhCC------------------C-c------------HHHHHHHHheeccCcEEEEEEecccCc--C
Confidence 78999987322 1122 1 1 467899999888 56 45666777554 3
Q ss_pred HHHHHHHhchhcCCCeEEec
Q 013515 390 EDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 390 e~vV~~~l~~~~~~~~~~~~ 409 (441)
+..|++.....||++..
T Consensus 166 ---~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 166 ---VKQFIKALKKLGFKLKS 182 (219)
T ss_dssp ---HHHHHHHHHCTTEEEEE
T ss_pred ---HHHHHHHHHHCCCeEEe
Confidence 34455444567887754
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.016 Score=54.32 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=45.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
++|++|||.|.....+.+-..+ .-+|+|+|-++.+++.++++....- +++...+.|...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc
Confidence 8999999999999988775432 3689999999999999998865432 445555555543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.041 Score=50.77 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCC-----CCCCc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDP-----AYSEV 314 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~-----~~~~f 314 (441)
.+.+||+++||+|-++.++|+.++. -.-.-.|.++..+..++..+...|.+|+. .+..|+....-... ....|
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 3446999999999999999999864 66778899999999999999998887753 45566665432211 12578
Q ss_pred cEEE
Q 013515 315 RAIL 318 (441)
Q Consensus 315 D~Il 318 (441)
|.|+
T Consensus 104 D~i~ 107 (204)
T PF06080_consen 104 DAIF 107 (204)
T ss_pred ceee
Confidence 9887
|
The function of this family is unknown. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.11 Score=49.96 Aligned_cols=72 Identities=10% Similarity=-0.074 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g--~--~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
...+||=+|.|-|+..-.+.+. + .+|+.+|+|+..++.+++.+.... . ++++++. . +.... .++||+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~~--~~~fDV 142 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDLD--IKKYDL 142 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhcc--CCcCCE
Confidence 3579999999999999988876 3 499999999999999999666532 2 4566654 1 11111 157999
Q ss_pred EEEcC
Q 013515 317 ILLDP 321 (441)
Q Consensus 317 Il~Dp 321 (441)
|++|-
T Consensus 143 IIvDs 147 (262)
T PRK00536 143 IICLQ 147 (262)
T ss_pred EEEcC
Confidence 99993
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.052 Score=57.49 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred cCcccccchhhHHHHHHhCCC--CCCEEEEEcCCCchHHHHHHHHhc---CCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 220 NGCVFLQGKASSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~--~g~~VLDl~ag~G~kt~~la~~~~---~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
.|.++.-..-+.+.+.++.+. |+..|.|+|||+|++-......+. ....+++.+....+...++.|+.-.|..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 455655556667777787765 678999999999998765544332 1246899999999999999998776652
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg 325 (441)
......+|...-+... ...+||.|+.+||-+.
T Consensus 274 t~~~~~~dtl~~~d~~-~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 274 NFNIINADTLTTKEWE-NENGFEVVVSNPPYSI 305 (501)
T ss_pred ccCcccCCcCCCcccc-ccccCCEEeecCCccc
Confidence 2333345543322111 1246999999999875
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.024 Score=53.23 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
-+|..|||+||.+||+|-.+.+. ++.+|+|+|+.-..+.- .++ .. ++|. .-..+++.+.+.+- .+..|.|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~---kLR-~d-~rV~~~E~tN~r~l~~~~~-~~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHW---KLR-ND-PRVIVLERTNVRYLTPEDF-TEKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCH---hHh-cC-CcEEEEecCChhhCCHHHc-ccCCCeEE
Confidence 35899999999999999999886 56899999998543331 111 11 2333 34457776665442 24679999
Q ss_pred EcCCCCC
Q 013515 319 LDPSCSG 325 (441)
Q Consensus 319 ~DpPCSg 325 (441)
+|..--+
T Consensus 150 ~DvSFIS 156 (245)
T COG1189 150 IDVSFIS 156 (245)
T ss_pred EEeehhh
Confidence 9998543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.059 Score=52.23 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHH-HHhcCCcEEEEEeCCHHHHHHHHHHHH-HhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 243 WKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIK-LSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la-~~~~~~~~V~a~D~~~~rl~~l~~~~~-~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+|+=+||||=-.|..+. +.......|+++|+++.+.+.+++.++ ..|+ ..+.+.++|+.+.... ...||+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEEEE
Confidence 499999999988877654 343344689999999999999999888 4555 5699999999876543 267999998
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
-+=
T Consensus 199 Aal 201 (276)
T PF03059_consen 199 AAL 201 (276)
T ss_dssp -TT
T ss_pred hhh
Confidence 544
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0067 Score=61.06 Aligned_cols=64 Identities=30% Similarity=0.343 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLD 305 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~~v~~~~~D~~~~~ 305 (441)
.++|+.|-|+|||.|-+++.++.. ..+|+|+|.++++++.++.|+..+-+ .+|++++.|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 368999999999999999998876 37999999999999999999998777 35899999987766
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=50.74 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=65.4
Q ss_pred hhhcCcccccchhh-HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 013515 217 LIVNGCVFLQGKAS-SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295 (441)
Q Consensus 217 ~~~~g~~~~Qd~ss-~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~ 295 (441)
.|.+|. .+|..|- .-+....+.++|.+||=+||||=|..+.+....-+..+|+.+|+++.|++.+++ +|.+.+.
T Consensus 145 s~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~ 219 (354)
T KOG0024|consen 145 SFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTD 219 (354)
T ss_pred chhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEe
Confidence 345554 4555542 223345668999999999999977766554444467899999999999999876 6876544
Q ss_pred EEeccCCCCC------CCCCCCCCccEEEEcCCCCCCcc
Q 013515 296 VLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 296 ~~~~D~~~~~------~~~~~~~~fD~Il~DpPCSg~G~ 328 (441)
...... ... ...-....||+.+= |||..+
T Consensus 220 ~~~~~~-~~~~~~~~v~~~~g~~~~d~~~d---CsG~~~ 254 (354)
T KOG0024|consen 220 PSSHKS-SPQELAELVEKALGKKQPDVTFD---CSGAEV 254 (354)
T ss_pred eccccc-cHHHHHHHHHhhccccCCCeEEE---ccCchH
Confidence 433222 111 00000134788874 888764
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.041 Score=50.82 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=52.2
Q ss_pred CcccccchhhHHHHHHh-CCCCCCEEEEEcCCCchHHHHHHHHh---cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 013515 221 GCVFLQGKASSMVAAAL-APKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l-~~~~g~~VLDl~ag~G~kt~~la~~~---~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~ 296 (441)
|...+|...-+.+.+.+ ---..+.|+++|.+-||.+..+|.++ ++.++|+++|++-+...+......-+ .++|++
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~ 89 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRITF 89 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceEE
Confidence 44555555444433321 11135699999999999999887655 46799999999654432221111111 167999
Q ss_pred EeccCCCCCCC-----CCCCCCccEEEEcCCCCCCc
Q 013515 297 LHGDFLNLDPK-----DPAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 297 ~~~D~~~~~~~-----~~~~~~fD~Il~DpPCSg~G 327 (441)
+.||..+.... .........|+.|.--+..-
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~h 125 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEH 125 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS----SS
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCCccHHH
Confidence 99998764411 10113456888998855433
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.068 Score=51.99 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 289 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~ 289 (441)
..+|||+|||||.-+..+.+..+...+++++|.|+.+++.++..++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 468999999999866666666665678999999999999888877654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.073 Score=52.03 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=33.0
Q ss_pred CEEEEEcCCCchHHHHHHHHh----cC---CcEEEEEeCCHHHHHHHHHH
Q 013515 243 WKVLDACSAPGNKTVHLAALM----KG---KGKIVACELNKERVRRLKDT 285 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~----~~---~~~V~a~D~~~~rl~~l~~~ 285 (441)
-+||.+||++|-=.-.||-++ +. ..+|+|.|+|+..++.+++.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 599999999996554444433 21 35799999999999998875
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.62 Score=41.74 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=85.0
Q ss_pred CCchHHHHHHHHhcCCcEEEEEeCC--HHHHHH---HHHHHHHhCCCcEE-EEeccCCCCCCCC-CCCCCccEEEEcCCC
Q 013515 251 APGNKTVHLAALMKGKGKIVACELN--KERVRR---LKDTIKLSGAANIE-VLHGDFLNLDPKD-PAYSEVRAILLDPSC 323 (441)
Q Consensus 251 g~G~kt~~la~~~~~~~~V~a~D~~--~~rl~~---l~~~~~~~g~~~v~-~~~~D~~~~~~~~-~~~~~fD~Il~DpPC 323 (441)
|--.++..|+...+....|+|.-.+ .+..+. +.+|++.+--.++. ....|+.++.... .....||+|+.+=|+
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH 85 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFPH 85 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeCCC
Confidence 3444556666665534567665443 333332 33566554222333 3456888887543 123689999999999
Q ss_pred CCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcC
Q 013515 324 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMS 402 (441)
Q Consensus 324 Sg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~ 402 (441)
.|.|.- .....+.....+=...+.+|..+++ +|.|.-+-|+-.|- +.=.|.+. +.+
T Consensus 86 ~G~~~~-------------------~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~l---A~~ 142 (166)
T PF10354_consen 86 VGGGSE-------------------DGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEEL---AAE 142 (166)
T ss_pred CCCCcc-------------------chhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHH---HHh
Confidence 984421 1245666777777888999999887 68888888887774 33344443 345
Q ss_pred CCeEEecC
Q 013515 403 FGFQLATP 410 (441)
Q Consensus 403 ~~~~~~~~ 410 (441)
.++.+...
T Consensus 143 ~gl~l~~~ 150 (166)
T PF10354_consen 143 AGLVLVRK 150 (166)
T ss_pred cCCEEEEE
Confidence 67776553
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.11 Score=48.17 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.|.++.|+||=-|+....+... +...+++|.|+++.-++.+.+++++.+. +.+++..+|........ ..+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~---d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE---DEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc---CCcCEEE
Confidence 34667999999999999988776 4567999999999999999999999987 67889999985544332 4678887
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCChhcHHHHHHHh
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~-G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
+ .|+|-. +=..||+.....+++ -.+|- .|--|+..+..+|
T Consensus 91 I----AGMGG~------------------------------lI~~ILee~~~~l~~~~rlIL-----QPn~~~~~LR~~L 131 (226)
T COG2384 91 I----AGMGGT------------------------------LIREILEEGKEKLKGVERLIL-----QPNIHTYELREWL 131 (226)
T ss_pred E----eCCcHH------------------------------HHHHHHHHhhhhhcCcceEEE-----CCCCCHHHHHHHH
Confidence 6 244421 114788888877763 46654 5666888999998
Q ss_pred c
Q 013515 398 P 398 (441)
Q Consensus 398 ~ 398 (441)
.
T Consensus 132 ~ 132 (226)
T COG2384 132 S 132 (226)
T ss_pred H
Confidence 5
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.11 Score=49.32 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+.++|+|+|||-=-.++.+.... +....+|+|++...++.+...+..+|. +..+...|...-.+. ...|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~----~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPK----EPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTT----SEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCC----CCcchhhH
Confidence 46799999999998888765443 346999999999999999999999997 466777787665433 44677765
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.1 Score=48.54 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.-.+.||+|||-|..|-++..- --.+|..+|..++.++.+++.+...+.....+.+.-..++.+.. .+||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~---~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE---GKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T---T-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC---CcEeEEEe
Confidence 3578999999999999877432 24689999999999999998765532234567777777766653 68999975
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.94 Score=37.66 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=45.5
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CCCCCCCCCCccEE
Q 013515 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LDPKDPAYSEVRAI 317 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~--~~~~~~~~~~fD~I 317 (441)
++|++||+|..+ .++........++++|+++.++...+......+...+.+..+|... .+.... ..||.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDS--ASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCC--CceeEE
Confidence 999999999977 5555432223789999999999985555443222126777777765 332210 257777
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.095 Score=51.23 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=37.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~ 288 (441)
.+|+.|||-++|+|..+. .|..++ -+.+++|++++-++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999997444 444443 5789999999999999999864
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.2 Score=49.90 Aligned_cols=76 Identities=22% Similarity=0.190 Sum_probs=52.0
Q ss_pred hCCCCCCEEEEEcCC-CchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 237 LAPKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 237 l~~~~g~~VLDl~ag-~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.+.+||++|+=.|+| -|..+.++|..++ .+|+|+|.++++++.+++ +|.+.+.... |......- .+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~i~~~-~~~~~~~~---~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHVINSS-DSDALEAV---KEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEEEEcC-CchhhHHh---HhhCc
Confidence 457899999988877 5566777888764 799999999999988754 5665332222 22222211 13499
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
.|+.-.|
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9998777
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.62 Score=43.21 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..|.+||.+|-|-|-..+.+.+. .+ .+-+-+|.++.-+++++...=+- -.||.++.+-..+.....+ .+.||.|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~-d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLP-DKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhcccc-ccCcceeEe
Confidence 67999999999999998888765 33 45566899999999887764322 2578888876665554432 256999998
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
|.=
T Consensus 176 DTy 178 (271)
T KOG1709|consen 176 DTY 178 (271)
T ss_pred ech
Confidence 753
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.11 Score=48.09 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
.+|+.|||-+||+|..+ ++|..++ .+.+++|+++.-++.+++
T Consensus 190 ~~gdiVlDpF~GSGTT~-~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTA-VAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHH-HHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHH-HHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 67999999999999744 4445543 579999999999988764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.14 Score=52.02 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=47.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
.|||+|+|+|-.+...++.. +..|+|+|+-..|.+.+++-+.++|. ++|.+++.-..
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence 58999999999988777764 45799999999999999999999998 67777764433
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.41 Score=44.37 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=64.8
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCch--HHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGN--KTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF 301 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~ 301 (441)
|..++-++..+..-..-..++++|++-|. .|+.|+... .-.|+++++-.++..+...++.+..+|..+ ++++.++.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 44556666666655566788999766443 344443332 335899999999999999999999888744 68888885
Q ss_pred C-CCCCCCCCCCCccEEEEcC
Q 013515 302 L-NLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 302 ~-~~~~~~~~~~~fD~Il~Dp 321 (441)
. .+... +..+|.+++|-
T Consensus 106 ~e~~~~~---~~~iDF~vVDc 123 (218)
T PF07279_consen 106 PEEVMPG---LKGIDFVVVDC 123 (218)
T ss_pred HHHHHhh---ccCCCEEEEeC
Confidence 3 33333 36789999984
|
The function of this family is unknown. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.34 Score=53.23 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc------C-----CcEEEEEeCCH---HHHHHHH-----------HHHHH-----hC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK------G-----KGKIVACELNK---ERVRRLK-----------DTIKL-----SG 290 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~------~-----~~~V~a~D~~~---~rl~~l~-----------~~~~~-----~g 290 (441)
..-+|+|+|-|+|.-.+...+... + .-+++++|.++ +-+..+. ...+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999998877766551 1 24789999865 2222221 11111 13
Q ss_pred CC---------cEEEEeccCCCCCCCCCCCCCccEEEEcC--CCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHH
Q 013515 291 AA---------NIEVLHGDFLNLDPKDPAYSEVRAILLDP--SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 359 (441)
Q Consensus 291 ~~---------~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp--PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (441)
+. ++++..+|+.+...... ..||.|++|+ | .++||. |+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP-------~~np~~-------------W~~-------- 186 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAP-------AKNPDM-------------WSP-------- 186 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCC-------ccChhh-------------ccH--------
Confidence 21 34567788876554432 4699999996 5 356765 333
Q ss_pred HHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 360 FQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 360 ~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
+++....++.+ +|+++--||+ ..|.+-|. ..||++..
T Consensus 187 ---~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~---~~GF~v~~ 224 (662)
T PRK01747 187 ---NLFNALARLARPGATLATFTSA-------GFVRRGLQ---EAGFTVRK 224 (662)
T ss_pred ---HHHHHHHHHhCCCCEEEEeehH-------HHHHHHHH---HcCCeeee
Confidence 44555555555 6776644555 78888774 46887754
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.53 Score=45.55 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchH----HHHHHHHhcC----CcEEEEEeCCHHHHHHHHH
Q 013515 242 GWKVLDACSAPGNK----TVHLAALMKG----KGKIVACELNKERVRRLKD 284 (441)
Q Consensus 242 g~~VLDl~ag~G~k----t~~la~~~~~----~~~V~a~D~~~~rl~~l~~ 284 (441)
.=+||-++|++|-= +..+.+..+. ..+|+|.|+|...++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 45899999999954 4444444432 4789999999999998863
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.23 Score=46.96 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=38.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g 290 (441)
-.+|+.|||-+||+|..... |..++ .+.+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~a-a~~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVA-ALQSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHH-HHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 36899999999999975543 34432 578999999999999988887643
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.36 Score=45.96 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..+|..-.|+||.|||.|-++... .-.|+|+|..+-+ ..+-.. ..|+-...|...+.+.. .+.|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dt--g~v~h~r~DGfk~~P~r---~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDT--GQVTHLREDGFKFRPTR---SNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhcc--cceeeeeccCcccccCC---CCCceEE
Confidence 457999999999999999988765 4799999977532 222222 35788889998888743 6789888
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
+|.=
T Consensus 276 CDmV 279 (358)
T COG2933 276 CDMV 279 (358)
T ss_pred eehh
Confidence 8753
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.41 Score=45.56 Aligned_cols=115 Identities=16% Similarity=0.249 Sum_probs=70.5
Q ss_pred HHHHhCCCC-CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKP-GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~-g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
++.-+...| ...|.|+|||-+-.+. .....|+++|+.+ -|-.++..|..++|..+
T Consensus 171 ii~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d--- 226 (325)
T KOG3045|consen 171 IIRKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVA---------------VNERVIACDMRNVPLED--- 226 (325)
T ss_pred HHHHHHhCcCceEEEecccchhhhhh------ccccceeeeeeec---------------CCCceeeccccCCcCcc---
Confidence 333444444 4578999999986554 2236899999763 23457789999998876
Q ss_pred CCccEEEEcCCCCCC-cccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGS-GTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~-G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe 390 (441)
+++|+++. |=++ |+ + + ...+..|.+.|+.|.++|..---+..+.-
T Consensus 227 ~svDvaV~---CLSLMgt------------------n-~------------~df~kEa~RiLk~gG~l~IAEv~SRf~dv 272 (325)
T KOG3045|consen 227 ESVDVAVF---CLSLMGT------------------N-L------------ADFIKEANRILKPGGLLYIAEVKSRFSDV 272 (325)
T ss_pred CcccEEEe---eHhhhcc------------------c-H------------HHHHHHHHHHhccCceEEEEehhhhcccH
Confidence 78999987 4222 21 0 0 36688899999966666654322333222
Q ss_pred HHHHHHhchhcCCCeEEe
Q 013515 391 DVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~~ 408 (441)
..|++.....||.+.
T Consensus 273 ---~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 273 ---KGFVRALTKLGFDVK 287 (325)
T ss_pred ---HHHHHHHHHcCCeee
Confidence 224433334566553
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.81 Score=46.11 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=36.9
Q ss_pred hCCCCCCEEEEEcCCCchHHH-HHHHHhcCCcEEEEEeCCHHHHHHHHHH
Q 013515 237 LAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDT 285 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~-~la~~~~~~~~V~a~D~~~~rl~~l~~~ 285 (441)
....++++|+=+||||=|..+ .+++. .+..+|+++|.++.|++.+++.
T Consensus 164 ~~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 164 AAVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh
Confidence 334556699999999977654 44554 4668999999999999998764
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.1 Score=45.85 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=55.8
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC--------CcEEEEeccCCCCCCC
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA--------ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~--------~~v~~~~~D~~~~~~~ 307 (441)
++.+.|..||= ..|+|+.+.++++.+. .+.+|++++.+..++..+.+.+..+++ .++.++.+|+.+....
T Consensus 75 ~~~~~gKvVLV-TGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFV-AGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEE-ECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34456777774 5557889999887663 346899999999888777665544221 2578889999875422
Q ss_pred CCCCCCccEEEEc
Q 013515 308 DPAYSEVRAILLD 320 (441)
Q Consensus 308 ~~~~~~fD~Il~D 320 (441)
...++.+|+|+..
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 1123568998874
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=91.07 E-value=3.6 Score=36.69 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=46.3
Q ss_pred hHHHHHHhCC-CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC---
Q 013515 230 SSMVAAALAP-KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--- 305 (441)
Q Consensus 230 s~l~~~~l~~-~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~--- 305 (441)
..++-.+++. .++.+|+-+||=+-...+. ........++-+|.|.+ .+.+|-+ .++.-|.....
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~R--------F~~~~~~--~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRR--------FEQFGGD--EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecch--------HHhcCCc--ceEECCCCChhhhh
Confidence 3344344442 4567898777755544433 22234578888999853 3334432 35555555432
Q ss_pred CCCCCCCCccEEEEcCCC
Q 013515 306 PKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPC 323 (441)
... .++||+|++|||-
T Consensus 81 ~~l--~~~~d~vv~DPPF 96 (162)
T PF10237_consen 81 EEL--KGKFDVVVIDPPF 96 (162)
T ss_pred hhc--CCCceEEEECCCC
Confidence 112 2689999999995
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.34 Score=50.30 Aligned_cols=135 Identities=13% Similarity=0.023 Sum_probs=71.9
Q ss_pred CCeEEeCCCCCCCCChhhhcCcc-cccchhhHHHHHHhCCCCC--CEEEEEcCCCchHHHHHHHHhcCCcEEEE---EeC
Q 013515 201 PDLLILPPGCDLHVHPLIVNGCV-FLQGKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVA---CEL 274 (441)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~g~~-~~Qd~ss~l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~~~V~a---~D~ 274 (441)
.+.+.|++++. .|.+|.- |++....++... . ..| -.+||+|||.|+++.+|.++ ...++. .|.
T Consensus 82 gd~~~FPgggt-----~F~~Ga~~Yid~i~~~~~~~-~--~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~ 150 (506)
T PF03141_consen 82 GDKFRFPGGGT-----MFPHGADHYIDQIAEMIPLI-K--WGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDE 150 (506)
T ss_pred CCEEEeCCCCc-----cccCCHHHHHHHHHHHhhcc-c--cCCceEEEEeccceeehhHHHHhhC---CceEEEcccccC
Confidence 35678886643 3555542 333233222211 1 223 36999999999999998775 223323 244
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHH
Q 013515 275 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL 354 (441)
Q Consensus 275 ~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~ 354 (441)
++..++.+-+ -|+..+.- ..-...++..+ ..||.|= ||...+ .|. ..+
T Consensus 151 ~~~qvqfale----RGvpa~~~-~~~s~rLPfp~---~~fDmvH----csrc~i-------~W~------------~~~- 198 (506)
T PF03141_consen 151 HEAQVQFALE----RGVPAMIG-VLGSQRLPFPS---NAFDMVH----CSRCLI-------PWH------------PND- 198 (506)
T ss_pred Cchhhhhhhh----cCcchhhh-hhccccccCCc---cchhhhh----cccccc-------cch------------hcc-
Confidence 4444444432 35543211 11223455444 6789884 665443 121 111
Q ss_pred HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 355 NKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 355 ~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
-.+|-..-+.|+ ||++|+|.=-++
T Consensus 199 -------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 199 -------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred -------cceeehhhhhhccCceEEecCCccc
Confidence 124444556676 799999987777
|
; GO: 0008168 methyltransferase activity |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.64 E-value=3.8 Score=40.33 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.|.+||=. .|+|+.+.+++..+.. ...|+++..++.............+. .++.++.+|..+.......+..+|.|+
T Consensus 4 ~~k~vlVt-G~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVT-GASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEE-CCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 35677755 4789999999886643 34787777776544433322222232 467888899887542211123579888
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEE-EcCC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STCS 383 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvY-sTCS 383 (441)
..+. ........ +.+ .+.+.........+++.+.+....|.+|| ||++
T Consensus 83 h~A~---~~~~~~~~-------------~~~-~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~ 131 (325)
T PLN02989 83 HTAS---PVAITVKT-------------DPQ-VELINPAVNGTINVLRTCTKVSSVKRVILTSSMA 131 (325)
T ss_pred EeCC---CCCCCCCC-------------ChH-HHHHHHHHHHHHHHHHHHHHcCCceEEEEecchh
Confidence 8654 11110000 000 22333445555677887766544466666 4443
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.46 E-value=3.3 Score=40.50 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
|.+|| +..|+|..+.+++..+... .+|++++.+..............+. ++++++.+|..+.......+..+|.|+.
T Consensus 4 ~~~il-VtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVC-VTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEE-EECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45676 5556899999998876443 4788888765433322222111121 4688899998865422111245799998
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEE-EcC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STC 382 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvY-sTC 382 (441)
-+....... ..| ..+.+.........+|+.+.+....+.+|| ||+
T Consensus 83 ~A~~~~~~~--~~~----------------~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~ 128 (322)
T PLN02662 83 TASPFYHDV--TDP----------------QAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSM 128 (322)
T ss_pred eCCcccCCC--CCh----------------HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCH
Confidence 776432110 000 012223344555677777765434456776 444
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=9.8 Score=35.89 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|.+||=.| |+|+.+.++++.+.. ..+|+.++.+...++.+...+...+. ++.++.+|..+...- .....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366777555 688899999887643 35899999998888877777766553 567788888764321 01124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+..+
T Consensus 89 ~id~vi~~ag~~ 100 (259)
T PRK08213 89 HVDILVNNAGAT 100 (259)
T ss_pred CCCEEEECCCCC
Confidence 689999876653
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.4 Score=40.20 Aligned_cols=125 Identities=9% Similarity=0.108 Sum_probs=68.4
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
|.|..+.+|| +..|+|..+.+++..+... .+|+++..+......... +..+ ...++.++.+|..+...-...+..+
T Consensus 4 ~~~~~~~~vl-ItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 4 LTPTGKKTAC-VIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred ccCCCCCeEE-EECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHhcC
Confidence 3455577777 5666799999998876433 478777766543332221 1111 1235788899988654211112457
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccH-H-HHHHHHHHHHHHHHHHhCCCCCc-EEEEEcCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEM-E-RLNKLSAFQKKALRHALSFPGVE-RVVYSTCS 383 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~-~-~~~~l~~~Q~~lL~~a~~~~~~G-~lvYsTCS 383 (441)
|.|+--+.-.... . .++ . -..........+|+.+.+....+ .+..||++
T Consensus 82 d~vih~A~~~~~~-------------------~-~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~ 133 (338)
T PLN00198 82 DLVFHVATPVNFA-------------------S-EDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAA 133 (338)
T ss_pred CEEEEeCCCCccC-------------------C-CChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecce
Confidence 9888755311000 0 011 1 12445566677888876643334 45555655
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.13 E-value=4 Score=38.27 Aligned_cols=79 Identities=11% Similarity=0.183 Sum_probs=53.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-------CCCCCCCcc
Q 013515 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-------KDPAYSEVR 315 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-------~~~~~~~fD 315 (441)
+|| +..|+|+.+.+++..+. ...+|++++.++...+.+...+...+ .++.++.+|..+... ........|
T Consensus 3 ~vl-ItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TAL-VTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEE-EcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455 44578889999887653 33589999999888887777666555 367888888876431 011124579
Q ss_pred EEEEcCCCC
Q 013515 316 AILLDPSCS 324 (441)
Q Consensus 316 ~Il~DpPCS 324 (441)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 998876543
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=87.78 E-value=0.64 Score=42.43 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHH------------HHHHhC-CCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 251 APGNKTVHLAALMKGK-GKIVACELNKERVRRLKD------------TIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 251 g~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~------------~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
|.|+.++.+|..+... .+|+++|+++++++.+.+ .+++.. -.+..+. .|.... ....|+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a------i~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA------IKDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH------HHH-SE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh------hhccce
Confidence 6676666666655433 599999999999987653 222211 1233332 222221 134688
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
+++-.|.--.. ...||.. .+ .+.++...+.++.|.+|---+|+-|.-.++++..+
T Consensus 80 ~~I~VpTP~~~--~~~~Dls-------------------~v----~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~i 134 (185)
T PF03721_consen 80 VFICVPTPSDE--DGSPDLS-------------------YV----ESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPI 134 (185)
T ss_dssp EEE----EBET--TTSBETH-------------------HH----HHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHH
T ss_pred EEEecCCCccc--cCCccHH-------------------HH----HHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhh
Confidence 98888754332 2233331 11 12222222334546666667899999999999999
Q ss_pred hchhcC--CCeEEecCCCCCCCcc
Q 013515 397 LPIAMS--FGFQLATPFPNGTAEA 418 (441)
Q Consensus 397 l~~~~~--~~~~~~~~~~~~~~~~ 418 (441)
|++... .+|.+.- .|+.-..|
T Consensus 135 le~~~~~~~~f~la~-~PErl~~G 157 (185)
T PF03721_consen 135 LEKRSGKKEDFHLAY-SPERLREG 157 (185)
T ss_dssp HHHHCCTTTCEEEEE-------TT
T ss_pred hhhhcccccCCeEEE-CCCccCCC
Confidence 976443 3565532 45555544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.54 E-value=4.1 Score=40.61 Aligned_cols=105 Identities=17% Similarity=0.096 Sum_probs=69.5
Q ss_pred HHhCCCCC----CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 235 AALAPKPG----WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 235 ~~l~~~~g----~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..++...| ...+|+|+|.|..+-++.... + +|-+++.+..-+-....++. .| |+.+-+|..+-.|.
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P~--- 236 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTPK--- 236 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC---cceecccccccCCC---
Confidence 44554455 789999999999999998854 3 47788888777777777765 55 55666786543222
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
-|.|++ +=-+|- |+-++. .++|+++++-++ +|.|+-.-|
T Consensus 237 ---~daI~m---kWiLhd--------------------wtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 237 ---GDAIWM---KWILHD--------------------WTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ---cCeEEE---Eeeccc--------------------CChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 256764 221221 334443 578999999766 677766555
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.05 E-value=5.7 Score=39.72 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+||=. .|+|..+.++++.+... .+|++++.+......+...+.. + .+++++.+|..+...-......+|.|+--
T Consensus 10 ~~~vLVt-G~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 10 TGTYCVT-GATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-G-DRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-C-CeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 6678844 46899999998877433 4899888876554443333221 2 46788888987643211111357999887
Q ss_pred CCCCC
Q 013515 321 PSCSG 325 (441)
Q Consensus 321 pPCSg 325 (441)
+..++
T Consensus 87 A~~~~ 91 (353)
T PLN02896 87 AASME 91 (353)
T ss_pred Ccccc
Confidence 76544
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=1.8 Score=41.04 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~-~~~~~~~~fD~Il~ 319 (441)
+|+. |+..+|+--.+.++ +...-++.++|++++-...++.++. +..++++..+|..... ...+..++=-.||+
T Consensus 89 ~~~~-l~~YpGSP~lA~~l---lR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLI 162 (279)
T COG2961 89 PGGG-LRYYPGSPLLARQL---LREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLI 162 (279)
T ss_pred CCCC-cccCCCCHHHHHHH---cchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEe
Confidence 4444 77777776555444 3445799999999999999999998 5678999999976432 11222234468999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHHhch
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPI 399 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~l~~ 399 (441)
|||.-- +++...+. +.|+.+++.-..|+. |-..|--+-..+..|++.
T Consensus 163 DPPfE~-------------------------~~eY~rvv----~~l~~~~kRf~~g~y----aiWYPik~r~~~~~f~~~ 209 (279)
T COG2961 163 DPPFEL-------------------------KDEYQRVV----EALAEAYKRFATGTY----AIWYPIKDRRQIRRFLRA 209 (279)
T ss_pred CCCccc-------------------------ccHHHHHH----HHHHHHHHhhcCceE----EEEEeecchHHHHHHHHH
Confidence 999521 22333332 334445443333532 233566678888888875
Q ss_pred hcCC
Q 013515 400 AMSF 403 (441)
Q Consensus 400 ~~~~ 403 (441)
.+..
T Consensus 210 L~~~ 213 (279)
T COG2961 210 LEAL 213 (279)
T ss_pred Hhhc
Confidence 4443
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.19 E-value=0.8 Score=41.85 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=41.5
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHH
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 277 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~ 277 (441)
|+.-+.-+..+.++++|++|+|+--|.|.+|..++..++++|.|+++-..+.
T Consensus 33 ~~Rhp~E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 33 KARHPGEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred hccCccceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 3333333444667899999999999999999999999999999999765543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=86.16 E-value=2.5 Score=40.68 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-C--------------------------
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-A-------------------------- 292 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~-------------------------- 292 (441)
..|.++||+||||--.- +.....-...|+..|..+.-.+.+++-++.-|. +
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35889999999995332 222222336899999999888777665543221 0
Q ss_pred -cEE-EEeccCCCCCCCCC---CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 013515 293 -NIE-VLHGDFLNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH 367 (441)
Q Consensus 293 -~v~-~~~~D~~~~~~~~~---~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~ 367 (441)
.|+ ++..|+.+.++-.+ ....||+|+. +-. .+-.-.-.......|++
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s---~fc-------------------------LE~a~~d~~~y~~al~n 184 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVIS---SFC-------------------------LESACKDLDEYRRALRN 184 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEE---ESS-------------------------HHHH-SSHHHHHHHHHH
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhh---hHH-------------------------HHHHcCCHHHHHHHHHH
Confidence 133 66788877665432 1134888863 111 12222222345678889
Q ss_pred HhCCCC-CcEEEEEcCC------C------CChhcHHHHHHHhchhcCCCeEEec
Q 013515 368 ALSFPG-VERVVYSTCS------I------HQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 368 a~~~~~-~G~lvYsTCS------~------~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
..+++| ||.||....- + .--=||+.|.+.|+. .||.+..
T Consensus 185 i~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~---aG~~i~~ 236 (256)
T PF01234_consen 185 ISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEE---AGFDIED 236 (256)
T ss_dssp HHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHH---TTEEEEE
T ss_pred HHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHH---cCCEEEe
Confidence 999988 7877664321 0 012478889888853 4776644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=86.03 E-value=5.7 Score=39.33 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC---cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~---~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
|.+||= ..|+|+.+.++++.+... .+|+++|.+......+.+.+ +-.++.++.+|..+...-...+..+|.|+
T Consensus 4 ~k~vLV-TGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILI-TGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEE-eCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 567774 455799999998876432 47888988765543332222 22467888999887542111124579998
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccH-HHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEM-ERLNKLSAFQKKALRHALSFPGVERVVYSTC 382 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~-~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTC 382 (441)
.-+....... .+ .++ +.+.........+++.+.+. ..+.+||.+.
T Consensus 80 h~Ag~~~~~~----~~--------------~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPA----AE--------------YNPFECIRTNINGAQNVIDAAIDN-GVKRVVALST 125 (324)
T ss_pred ECcccCCCch----hh--------------cCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeC
Confidence 7554321100 00 112 23334445566677776643 3367777543
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.98 E-value=6.8 Score=36.66 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---------CC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---------DP 309 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---------~~ 309 (441)
.++.+||=.| |+|+.+..++..+.. ..+|++++.+...++.+.+.++..+...+.++..|....... ..
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 4577788665 678888888876643 349999999998888887777776655667777777532211 01
Q ss_pred CCCCccEEEEcCCC
Q 013515 310 AYSEVRAILLDPSC 323 (441)
Q Consensus 310 ~~~~fD~Il~DpPC 323 (441)
.+.++|.|+..+..
T Consensus 89 ~~~~id~vi~~Ag~ 102 (247)
T PRK08945 89 QFGRLDGVLHNAGL 102 (247)
T ss_pred HhCCCCEEEECCcc
Confidence 12468999986643
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=3.6 Score=38.60 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+.. ..+|+.++.++...+.+...++..+. ++.++.+|+.+...-. ...+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 566689999999887643 35899999999888877777766553 5778888887543110 01246
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 799988654
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=85.23 E-value=8.6 Score=38.34 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+|| +..|+|..+.+++..+... .+|++++.+......+.......+. .++.++.+|..+...-......+|.|+-
T Consensus 5 ~k~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 5 KETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCEEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 34666 6677999999998876433 5898888876655544333222222 2477888998765422111235788887
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 380 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYs 380 (441)
-+....... . +.. .+.+.........+|+.+.+....+.+||+
T Consensus 84 ~A~~~~~~~--~---------------~~~-~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~ 126 (351)
T PLN02650 84 VATPMDFES--K---------------DPE-NEVIKPTVNGMLSIMKACAKAKTVRRIVFT 126 (351)
T ss_pred eCCCCCCCC--C---------------Cch-hhhhhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 664321110 0 000 122333445566778887654324567774
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=84.80 E-value=0.25 Score=45.45 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
..++||+|||-|-.|.+|+..+ .+|+|.|.|..|..+++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 4589999999999999998876 469999999988777654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=84.73 E-value=2.3 Score=41.02 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=43.1
Q ss_pred CEEEEEcCCC--chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 243 WKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 243 ~~VLDl~ag~--G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
...||+|||- -+-+-++|+...+..+|+-+|+++-.+..++..+....-....++.+|+.+..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 5799999993 34577788888888999999999999999888887653223789999998754
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.43 E-value=11 Score=37.08 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
|.+|| +..|+|..+.+++..+... .+|+++..+....+...+.....+. .+++++.+|..+...-......+|.|+.
T Consensus 5 ~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 5 GKLVC-VTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 55666 6677999999998865433 4787766555443333333222222 4688888998765421111235798887
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
-+.
T Consensus 84 ~A~ 86 (322)
T PLN02986 84 TAS 86 (322)
T ss_pred eCC
Confidence 654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.88 E-value=4.5 Score=37.48 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+..||=.| |+|+.+.+++..+.. ..+|++++.++..+..+.+.+... ..+.++.+|..+...-. ..+..
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56778666 588888888876643 358999999988877776655432 35777888876543110 01246
Q ss_pred ccEEEEcC
Q 013515 314 VRAILLDP 321 (441)
Q Consensus 314 fD~Il~Dp 321 (441)
+|.|+..+
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 78888765
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.29 E-value=2.7 Score=39.50 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEec-cCCCCCCCC-CCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLHG-DFLNLDPKD-PAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~~-~v~~~~~-D~~~~~~~~-~~~~~fD~ 316 (441)
++-+.||+|.|.--.--.+.-.+.+ =+-++.|+|+..++.++.++..+ ++. .|++... |-..+-... ...+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 4567899987754332222222222 36789999999999999999887 553 3555443 333332221 11368999
Q ss_pred EEEcCCCCCC
Q 013515 317 ILLDPSCSGS 326 (441)
Q Consensus 317 Il~DpPCSg~ 326 (441)
++++||--++
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999997554
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=16 Score=34.02 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
+.+||=.| |+|+.+.+++..+.. ..+|+.++.++.+++.+...+.... -.++.++..|..+...- ...++
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34566444 688899988877643 3589999999998888777665532 13577888898865311 01235
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+..+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.93 E-value=3 Score=41.04 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=44.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
.+....+++||+.|.=.|.|.=|.+..+.....++++|+++|+++++.+.+++
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 34456788999999999999888888887777788999999999999988754
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=9 Score=36.75 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+.. ..+|+.+|.+.+.++...+.+...|. ++.++.+|+.+...-. ..++.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 666778899999876643 35899999998887777666655453 5777889987643110 11246
Q ss_pred ccEEEEcCCCCCC
Q 013515 314 VRAILLDPSCSGS 326 (441)
Q Consensus 314 fD~Il~DpPCSg~ 326 (441)
+|.|+..+.-+..
T Consensus 84 id~vi~~Ag~~~~ 96 (287)
T PRK06194 84 VHLLFNNAGVGAG 96 (287)
T ss_pred CCEEEECCCCCCC
Confidence 7999987765443
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.60 E-value=3.5 Score=35.84 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=29.3
Q ss_pred EEcCCCc--hHHHHHH-HHhcCCcEEEEEeCCHHHHHHHHHH--HHHh
Q 013515 247 DACSAPG--NKTVHLA-ALMKGKGKIVACELNKERVRRLKDT--IKLS 289 (441)
Q Consensus 247 Dl~ag~G--~kt~~la-~~~~~~~~V~a~D~~~~rl~~l~~~--~~~~ 289 (441)
|+||..| ..+..+. +.....++|+++|.++..++.++.+ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666654 2455678999999999999999999 5544
|
; PDB: 2PY6_A. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.35 E-value=13 Score=35.29 Aligned_cols=80 Identities=9% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
++.+||=.| |+|+.+.+++..+.. ..+|++++.+++.+....+.+...+. ++.++..|..+...-. ..+.
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888665 578888888776543 35899999998888777666666553 4567788887533110 1124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.++..+.
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 6799998663
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=6.1 Score=37.18 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+.. ...|+.++.++...+.+.+.++..|. ++.++.+|..+..... ...+.
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 667788899888876633 35899999999888888777776653 5677888887644211 01245
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+.+.
T Consensus 85 ~d~vi~~ag~~ 95 (262)
T PRK13394 85 VDILVSNAGIQ 95 (262)
T ss_pred CCEEEECCccC
Confidence 79998876554
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=12 Score=34.92 Aligned_cols=80 Identities=10% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCc-EEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKG-KIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~-~V~a-~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|.+|| +..|+|+.+.++++.+...| +|+. .+.+....+.+.+.++..+ .++.++.+|..+...- ...++
T Consensus 4 ~~~vl-ItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVAL-VTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 55677 45557888999888775443 6655 4666777766666666555 3577788888764311 01124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
..|.|+..+..
T Consensus 82 ~id~vi~~ag~ 92 (250)
T PRK08063 82 RLDVFVNNAAS 92 (250)
T ss_pred CCCEEEECCCC
Confidence 57999987653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.04 E-value=13 Score=34.82 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|..+|=.| |+|+.+..++..+.. ..+|+.++.++..+..+.+.++..+. .+.++..|..+...- ...++.
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 55677554 678888888877643 35899999998888877777766553 466777887764311 011356
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 87 id~vi~~ag~~ 97 (254)
T PRK08085 87 IDVLINNAGIQ 97 (254)
T ss_pred CCEEEECCCcC
Confidence 89999877543
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.92 E-value=3.7 Score=40.87 Aligned_cols=57 Identities=25% Similarity=0.252 Sum_probs=46.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
.+...+++++|+.|.=.|+|-=|.+..+...+.+.++|+|+|+++.+++.+++ +|..
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT 232 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT 232 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc
Confidence 45567889999999999998777777776666778999999999999998754 5653
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=18 Score=34.33 Aligned_cols=80 Identities=10% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCCCc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSEV 314 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~~~f 314 (441)
|..+|=. .|+|+.+..++..+. ...+|+.++.++..++.+.+.+....-.++.++..|+.+...-. ..++.+
T Consensus 8 ~k~~lIt-Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTT-ASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEe-CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 5566644 456777888877663 33589999999988888777765542235778888887643110 123568
Q ss_pred cEEEEcCC
Q 013515 315 RAILLDPS 322 (441)
Q Consensus 315 D~Il~DpP 322 (441)
|.++..+-
T Consensus 87 D~lv~nag 94 (263)
T PRK08339 87 DIFFFSTG 94 (263)
T ss_pred cEEEECCC
Confidence 98887553
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.39 E-value=2.1 Score=43.43 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC----------CCCC-C-CCCCCccEE
Q 013515 251 APGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN----------LDPK-D-PAYSEVRAI 317 (441)
Q Consensus 251 g~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~----------~~~~-~-~~~~~fD~I 317 (441)
|-|+.++.+|..+... .+|+++|+++.+++.+.. |-.. +..-+... +... + ......|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G~~~--i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----GESY--IEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----Ccce--eecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 5677777776665443 699999999999987643 2111 11111110 0000 0 011356888
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE-RVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G-~lvYsTCS~~~~ENe~vV~~~ 396 (441)
++-.|---.+ .+.||+..- ....+.....|+.| .+|+ --|.-|--.|+++..+
T Consensus 89 iI~VPTPl~~--~~~pDls~v-----------------------~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~pl 142 (436)
T COG0677 89 IICVPTPLKK--YREPDLSYV-----------------------ESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPL 142 (436)
T ss_pred EEEecCCcCC--CCCCChHHH-----------------------HHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHH
Confidence 8888855444 256665211 12222333456645 5555 4567899999999999
Q ss_pred hch
Q 013515 397 LPI 399 (441)
Q Consensus 397 l~~ 399 (441)
|+.
T Consensus 143 le~ 145 (436)
T COG0677 143 LEE 145 (436)
T ss_pred Hhh
Confidence 974
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.04 E-value=19 Score=34.33 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~------~~~~~ 313 (441)
+..|| +..|+|+.+..++..+. ....|++++.+++.++...+.+...+. .++.++.+|..+..... ..++.
T Consensus 3 ~k~~l-ItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAI-VTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEE-EECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34566 44567788888876553 345899999998888877776666554 36788888887643210 11246
Q ss_pred ccEEEEcCCCCCCc
Q 013515 314 VRAILLDPSCSGSG 327 (441)
Q Consensus 314 fD~Il~DpPCSg~G 327 (441)
+|.|+..+..+..+
T Consensus 82 id~vv~~ag~~~~~ 95 (280)
T PRK06914 82 IDLLVNNAGYANGG 95 (280)
T ss_pred eeEEEECCcccccC
Confidence 79999877654433
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.82 E-value=11 Score=34.99 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.+.+|| +..|+|+.+.+++..+.. ..+|++++.+++.+..+.+.++..+ .++.++..|+.+...-. ..++
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777 556688999999887643 3588999999888887777766555 36788888987643110 1124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+-
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6899988654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.39 E-value=24 Score=34.83 Aligned_cols=52 Identities=15% Similarity=0.004 Sum_probs=35.3
Q ss_pred HhCCCCCCEEEEEcCCCch-HHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~-kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...+++|++||=.|+|+-+ .+.++|..++ .+|++++.++++++.+ +.+|.+.
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCce
Confidence 4567889999988864333 2344555542 4799999999987655 4578754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.25 E-value=4.2 Score=35.55 Aligned_cols=73 Identities=22% Similarity=0.159 Sum_probs=55.3
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
..++.-.+..+.+|+|+|-|..-+..++.. .-.-+++|+++-.+...+-..-+.|+ +.+.+...|..+.+..+
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 345555666799999999999888777652 34678999999988888877778887 45677777877766543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 441 | ||||
| 2b9e_A | 309 | Human Nsun5 Protein Length = 309 | 4e-45 | ||
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 1e-23 | ||
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 5e-19 | ||
| 3a4t_A | 274 | Crystal Structure Of Atrm4 From M.Jannaschii With S | 1e-16 | ||
| 3m6u_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 4e-16 | ||
| 3m6w_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 4e-16 | ||
| 3m6x_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 6e-15 | ||
| 2frx_A | 479 | Crystal Structure Of Yebu, A M5c Rna Methyltransfer | 1e-13 | ||
| 3m4x_A | 456 | Structure Of A Ribosomal Methyltransferase Length = | 4e-13 | ||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 1e-08 | ||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 2e-04 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 2e-04 |
| >pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 | Back alignment and structure |
|
| >pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450 | Back alignment and structure |
|
| >pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 | Back alignment and structure |
|
| >pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 | Back alignment and structure |
|
| >pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464 | Back alignment and structure |
|
| >pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 | Back alignment and structure |
|
| >pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 | Back alignment and structure |
|
| >pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479 | Back alignment and structure |
|
| >pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 | Back alignment and structure |
|
| >pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429 | Back alignment and structure |
|
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 8e-89
Identities = 107/253 (42%), Positives = 143/253 (56%), Gaps = 27/253 (10%)
Query: 164 PDVPKPRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLL 204
P PR+VRVNTLK D V +Q D L+P+LL
Sbjct: 6 PASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELL 65
Query: 205 ILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK 264
+ P DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K
Sbjct: 66 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK 125
Query: 265 GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 324
+GKI A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCS
Sbjct: 126 NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCS 185
Query: 325 GSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSI 384
GSG + +L+ A RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+
Sbjct: 186 GSGMPSRQLEEP--------GAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSL 237
Query: 385 HQVENEDVIKSVL 397
Q ENEDV++ L
Sbjct: 238 CQEENEDVVRDAL 250
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 1e-54
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 21/238 (8%)
Query: 165 DVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCV 223
K +++RVNTLK++ + L + V++K L + + P + G
Sbjct: 6 KGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYY 65
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
Q +S + L P+ +LD C+APG KT HLA LMK KG IVA E++K R + LK
Sbjct: 66 MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR-AILLDPSCSGSGTAAERLDHLLPSHAS 342
I G N +++ D ILLD CSG+ +
Sbjct: 126 SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDK----------- 174
Query: 343 GHTADPT-EMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
+ E + S QK+ + + +VYSTCS+ ENE+VIK +L
Sbjct: 175 ----NRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYSTCSMEVEENEEVIKYIL 227
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 7e-54
Identities = 72/247 (29%), Positives = 112/247 (45%), Gaps = 18/247 (7%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPD-LLILPPGCDL 212
E + + + + P PR RVNTLK+ V V L K+ F ++ + + +
Sbjct: 30 ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 89
Query: 213 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 272
P + G +++Q +S AL PKPG V D +APG KT +LA LM+ G I A
Sbjct: 90 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF 149
Query: 273 ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 332
++++ R+R + + G N+ + H L++ + ILLD C+GSGT +
Sbjct: 150 DVDENRLRETRLNLSRLGVLNVILFHSSSLHI-GELNVE--FDKILLDAPCTGSGTIHKN 206
Query: 333 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENE 390
+ M+ + Q + L L PG +VYSTCS+ ENE
Sbjct: 207 PE----------RKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG-ILVYSTCSLEPEENE 255
Query: 391 DVIKSVL 397
VI+ L
Sbjct: 256 FVIQWAL 262
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 1e-50
Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 225
+ +RVNTLK +V+ + EL + V + + VP +L + + G + +
Sbjct: 184 HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV 243
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
Q +AS++ + L PKPG V+D +APG KT HLA LMK KGKI A +++K R++RLKD
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303
Query: 286 IKLSGAANIEVLHGDFLNLDPKDPAYSEVRA--ILLDPSCSGSGTAAERLD---HLLPSH 340
+K G ++ L D E A +LLD C+ SGT + + L
Sbjct: 304 VKRMGIKIVKPLVKDARKAPEI---IGEEVADKVLLDAPCTSSGTIGKNPELRWRLRE-- 358
Query: 341 ASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
+++N++S Q++ L A PG R++Y+TCSI + ENE I+ L
Sbjct: 359 -----------DKINEMSQLQRELLESAARLVKPG-GRLLYTTCSIFKEENEKNIRWFL 405
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 1e-49
Identities = 71/279 (25%), Positives = 109/279 (39%), Gaps = 32/279 (11%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD-LLILPPGCDLH 213
+ AL Q + R N LK V +Q + L G
Sbjct: 26 DFFSALEQGS---VKKGFRWNPLKPAGLDMVQTY-HSEELQPAPYSNEGFLGTVNG---- 77
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
L G + Q ++ +V A A KPG KVLD C+APG K+ LAA MKGKG +V E
Sbjct: 78 KSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNE 137
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 333
+ +R + L + I+ G +N V + L P + + I++D CSG G R
Sbjct: 138 IFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD--RIVVDAPCSGEGMF--RK 193
Query: 334 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENED 391
D P+ T E Q++ L A+ +++YSTC+ ENE+
Sbjct: 194 D---PNAIKEWT-----EESPLYCQKRQQEILSSAIKMLKNK-GQLIYSTCTFAPEENEE 244
Query: 392 VIKSVL--------PIAMSFGFQLATPFPNGTAEASQFL 422
+I ++ I ++ A + +
Sbjct: 245 IISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTI 283
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 6e-48
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 22/259 (8%)
Query: 148 RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLIL 206
R + S P R +RVNTLK+ V + + + + +
Sbjct: 17 REAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWI 76
Query: 207 PPGCDLHV----HPLIVNGCVFLQGKASSMVAAALA--PKPGWKVLDACSAPGNKTVHLA 260
+ + ++G ++Q +S + AAL +V+D +APG+KT ++
Sbjct: 77 ERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIS 136
Query: 261 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320
A M +G I+A E + RV+ L I G +N+ + H D P + AILLD
Sbjct: 137 ARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD--AILLD 194
Query: 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVV 378
CSG G R D P + E +++A Q++ + A PG +V
Sbjct: 195 APCSGEGVV--RKD---PDALKNWS-----PESNQEIAATQRELIDSAFHALRPGG-TLV 243
Query: 379 YSTCSIHQVENEDVIKSVL 397
YSTC+++Q ENE V +
Sbjct: 244 YSTCTLNQEENEAVCLWLK 262
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 8e-46
Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 18/235 (7%)
Query: 165 DVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
+ + +RVNTLK+ ++ + ++ + P HP G +
Sbjct: 27 EGKRTYGLRVNTLKLPPEAFQRISP--WPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYY 84
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E++ +RVR L +
Sbjct: 85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 344
++ GA V L Y +LLD CSG G + +
Sbjct: 145 NVERWGAPLA-VTQAPPRALAEAFGTY--FHRVLLDAPCSGEGMFRKDRE---------- 191
Query: 345 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
A +++ QK L A PG +VYSTC+ ENE V+ L
Sbjct: 192 AARHWGPSAPKRMAEVQKALLAQASRLLGPG-GVLVYSTCTFAPEENEGVVAHFL 245
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-42
Identities = 63/244 (25%), Positives = 100/244 (40%), Gaps = 21/244 (8%)
Query: 157 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVH 215
+ A Q P P ++R+N DS + L + PD + L +H
Sbjct: 165 VEANNQRP----PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHAL 220
Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 275
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + ++VA +++
Sbjct: 221 PGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDID 279
Query: 276 KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDH 335
++R+ R+ D +K G V GD ILLD CS +G D
Sbjct: 280 EQRLSRVYDNLKRLG-MKATVKQGDGRYPSQWCGEQQ-FDRILLDAPCSATGVIRRHPD- 336
Query: 336 LLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVI 393
++ L +L Q + L G +VY+TCS+ EN I
Sbjct: 337 ------IKWLRRDRDIPELAQL---QSEILDAIWPHLKTG-GTLVYATCSVLPEENSLQI 386
Query: 394 KSVL 397
K+ L
Sbjct: 387 KAFL 390
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 9e-09
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
V K G VLD + G +L+ ++ KGK+ A ++ +E V + + G
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88
Query: 293 NIEVLHGDFLNL 304
N+EVL + +
Sbjct: 89 NVEVLKSEENKI 100
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 65/406 (16%), Positives = 114/406 (28%), Gaps = 135/406 (33%)
Query: 82 KHLS-IIKQVLDSAS---ILNSKWKRQEELVYILTYDILF--GQEI--SLVGDAEK---- 129
K + + K +L I+ SK L + L +E+ V + +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSK--DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 130 FLM--LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV-RVNTLKMDVDSAVL 186
FLM + Q ++ IE LY V V R+ L
Sbjct: 93 FLMSPIKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYNVSRL--------QPYL 138
Query: 187 ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK------ 240
+L + LL L P ++ + ++ G GK + +
Sbjct: 139 KLRQA-----------LLELRPAKNVLIDGVL--GS----GK-TWVALDVCLSYKVQCKM 180
Query: 241 PG---WKVLDACSAPGNKTVHLAALM------------KGKGKIVACELNKERVRRL--- 282
W L C++P L L+ + + +RRL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 283 ---------------KDTIK--------LSGAANIEVLHGDFLN--------LDPKDPAY 311
L +V DFL+ LD
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTL 298
Query: 312 S--EVRAILLD---------PS--CSGS----GTAAERL-DHLLPSHASGHTADPTEMER 353
+ EV+++LL P + + AE + D L T D +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-------ATWDNWKHVN 351
Query: 354 LNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPI 399
+KL+ + +L L P R ++ S+ + + +L +
Sbjct: 352 CDKLTTIIESSLNV-LE-PAEYRKMFDRLSVFP-PSAHIPTILLSL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-07
Identities = 73/508 (14%), Positives = 145/508 (28%), Gaps = 144/508 (28%)
Query: 1 MARTKTAATAPSGASAK--TSRNGRLSNAER--SAYF-ARREAAKVLRLVLRGDARRRAV 55
M+ KT PS + R+ RL N + + Y +R + LR L + V
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 56 ------GSIKS-LVYSPSVKNKKATYALVCQTLKHLSI---------IKQVLDSASILNS 99
GS K+ + VC + K +K ++L
Sbjct: 154 LIDGVLGSGKTWVA------------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-- 199
Query: 100 KWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMA 159
+ ++L+Y + + D + L +IQ L +LL + L+
Sbjct: 200 --EMLQKLLYQID------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLV 249
Query: 160 LYQTPDVPKPRYVRV-----NTL-----KMDVDSAVLELGKQFVVQKDD--LVPD----L 203
L +V + L K D + L PD L
Sbjct: 250 L---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 204 LI---------LPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG----WK----- 244
L+ LP +P + S++A ++ WK
Sbjct: 307 LLKYLDCRPQDLPREVLT--TNPRRL-----------SIIAESIRDGLATWDNWKHVNCD 353
Query: 245 ----VLDACSA---PG------------NKTVHL-AALMKGKGKIVACELNKERVRRLKD 284
++++ P + H+ L+ ++ ++ K V + +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDVMVVVN 409
Query: 285 TIKLSGAANIEV------LHGDFLNLDPKDPAYSEVRAILLD----PSC-SGSGTAAERL 333
+ + + +L L K + ++D P L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 334 DHLLPSHASGHTADPTEMERLNKLS------AFQKKALRHALSFPGVERVVYSTCSI--- 384
D SH H + ER+ F ++ +RH + + +T
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 385 ---HQVENEDVIKSVLPIAMSFGFQLAT 409
+ +N+ + ++ + F ++
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 3e-04
Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 28/153 (18%)
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY----SEVRAILLDPSC 323
I+ + RL T+ ++ + L ++ Y S ++ PS
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-----YKFLMSPIKTEQRQPSM 107
Query: 324 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY--ST 381
+R D L + + RL ++AL V ++
Sbjct: 108 MTRMYIEQR-DRL---YNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNV--LIDGVLG 160
Query: 382 CSIHQVENEDVIKSVLPIAMSFGFQLATPFPNG 414
K+ + + + +++
Sbjct: 161 SG----------KTWVALDVCLSYKVQCKMDFK 183
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 4e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
++ + + +S + +PG +L+ GN + ++
Sbjct: 73 FIVSDFSPMYFGRVI-RRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYA 131
Query: 263 MKGKGKIVACELNKERVRRLKDTIK-LSGAANIEVLHGDFLNLDPKDPA 310
+ GKG + E +++ +++ D + N+ D +
Sbjct: 132 LNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY 180
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 6e-08
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
++ PG KVL+A G +TV LA +I + +++ E + + ++ + +G
Sbjct: 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNG 85
Query: 291 AANIEVLHGDFLNLD 305
N++ L + +L
Sbjct: 86 IKNVKFLQANIFSLP 100
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 8e-08
Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
+ IL P ++ + G + K ++++ A PG +++A G T+ LA
Sbjct: 55 EFKILRPRIVDYLDKM-KRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLAN 113
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
++ +G++V+ E+ ++ + + IK +G + + + ++ V L P
Sbjct: 114 IVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQP 173
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
+ALAPKP + D G+ + + V E+++ER R+ G ++
Sbjct: 19 SALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDR 77
Query: 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP 338
+ P I + + G A L
Sbjct: 78 IAVQQGAPRAFDDVPD--NPDVIFIGGGLTAPGVFAAAWKRLPV 119
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
+G + + A K +VLD + G+ A + K+VA +L ++ ++ +
Sbjct: 22 KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAF 78
Query: 286 IKLSGAANIEVLHGDFLNL 304
I+ +G +E + GD +
Sbjct: 79 IEGNGHQQVEYVQGDAEQM 97
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 5e-07
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
+ ++ + +VLD + G+ + + + + + + KE V
Sbjct: 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSF 62
Query: 286 IKLSGAANIEVLHGDFLNL 304
+ G N+ G +L
Sbjct: 63 AQEKGVENVRFQQGTAESL 81
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 1e-06
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
L+L P +V + G + K ++ + PG +VL+A + G T+ L
Sbjct: 62 FLVLRPLLVDYVM-SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRA 120
Query: 263 MKGKGKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLNLDPKDPAYSEVRAILL 319
+ G++++ E + + + N ++ D + + D + +L
Sbjct: 121 VGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDML 180
Query: 320 DP 321
P
Sbjct: 181 AP 182
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288
S +V ++D G + L L+ K + + + ++ +L
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
Query: 289 SGAANIEVLHGDFLNLDPKD 308
+ E L GD ++ D
Sbjct: 70 LP-YDSEFLEGDATEIELND 88
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-06
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
+ AA + G + + P T L + + G ++ E+ + + I+
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIE 167
Query: 288 LSGAANIEVLHGDFLNLDPKD 308
G + V+ GD +D +
Sbjct: 168 GLGVDGVNVITGDETVIDGLE 188
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-06
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLH 298
K G V+DA GN T LA+L+ G++ ++ + + + + ++
Sbjct: 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80
Query: 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL 337
N+D + L SG + + R + +
Sbjct: 81 DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 5e-06
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296
L K G ++L A G H++ ++ +G+I E +R L ++ NI
Sbjct: 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFP 130
Query: 297 LHGDFLNLDPKDPAYSEVRAILLDPSCSG 325
+ GD + V + D +
Sbjct: 131 ILGDARFPEKYRHLVEGVDGLYADVAQPE 159
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
+ L + + D + + ++ + LM G+I A E N + + ++D +K A N+
Sbjct: 34 SKLRLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNV 92
Query: 295 EVLHGDF 301
++
Sbjct: 93 TLVEAFA 99
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 227 GKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
++ A + + D G +T+ LA G++ + +
Sbjct: 30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAG--HVTGQVTGLDFLSGFIDIFNR 87
Query: 285 TIKLSGAAN-IEVLHGDFLNLD 305
+ SG N + + G +L
Sbjct: 88 NARQSGLQNRVTGIVGSMDDLP 109
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-05
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 1/118 (0%)
Query: 204 LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 263
IL P + + + K SS +A L K G +++D G LA +
Sbjct: 76 YILIPSLIDEIMN-MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV 134
Query: 264 KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
GK+ A E +E + + + G + ++ + + + DP
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP 192
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 224 FL--QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 281
L G ++ AA K VL+ GN TV L L K K++ +++ +
Sbjct: 24 LLKNPGILDKIIYAA-KIKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISE 79
Query: 282 LKDTIKLSGAANIEVLHGDFLNLD 305
+K G N+EV GD +
Sbjct: 80 VKKRCLYEGYNNLEVYEGDAIKTV 103
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 4e-05
Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 17/175 (9%)
Query: 229 ASSMVAA---ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD- 284
+S V + + + G KV+D G + ALM + + E N E +
Sbjct: 78 SSGAVTSSYKSRFIREGTKVVDLTGGLG---IDFIALMSKASQGIYIERNDETAVAARHN 134
Query: 285 -TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC-SGSGTAAERLDHLLPSHAS 342
+ L+ ++ +L GDF P + I +DP+ SG+ + P
Sbjct: 135 IPLLLNEGKDVNILTGDFKEYLPLIKTFH-PDYIYVDPARRSGADKRVYAIADCEPD--- 190
Query: 343 GHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
L + L + + + +H V +K +L
Sbjct: 191 ----LIPLATELLPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKELL 241
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 5e-05
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
+L + P + ++ + K +S + L PG +VL+A + G T+ LA
Sbjct: 58 ELSVHRPTLEEYLLH-MKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLAR 116
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH-GDFLNLDPKDPAYSEVRAILLD 320
+ KG + + E + + + ++ H G + ++ + LD
Sbjct: 117 AVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA---AYDGVALD 173
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-05
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE---------RVRRLK 283
+A A KPG K+L+ G+ + LA + G + ++ +
Sbjct: 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94
Query: 284 DTIKLSGAANIEVLHGDFLNLDP 306
L + +L P
Sbjct: 95 LAGPLGDRLTVHFNTNLSDDLGP 117
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
V+ A +LD + G + L +++++ + K+ + G
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKN--RFRGN 91
Query: 292 ANIEVLHGDFLNLDPKDP 309
++ + D+ D ++
Sbjct: 92 LKVKYIEADYSKYDFEEK 109
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-05
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG-SGTAAERLDHLLPSHAS 342
++ NI + GD + +V I D + + + + L
Sbjct: 116 PIVE--ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGY 173
Query: 343 G 343
G
Sbjct: 174 G 174
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293
+ P K++D CS GN + L + K KIV E+ + K ++ + +
Sbjct: 42 KFSYLPIRKGKIIDLCS--GNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED 99
Query: 294 -IEVLHGDFLNLDPKDPAYS 312
IE++ D + P
Sbjct: 100 QIEIIEYDLKKITDLIPKER 119
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
+ G +D S PG ++ LA + I A + +K I +
Sbjct: 35 NIINRFGITAG-TCIDIGSGPGALSIALAK--QSDFSIRALDFSKHMNEIALKNIADANL 91
Query: 292 AN-IEVLHGDFLNL 304
+ I+++ GD N+
Sbjct: 92 NDRIQIVQGDVHNI 105
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
V+ K+ D G +T+ LA + KG+I +L + + + +
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKAN 93
Query: 291 -AANIEVLHGDFLNLDPKD 308
A ++ + G NL ++
Sbjct: 94 CADRVKGITGSMDNLPFQN 112
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
V+DA GN T LA L K+ A ++ ++ + + + G N E++
Sbjct: 21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILD 77
Query: 300 DFLNLDP 306
NLD
Sbjct: 78 GHENLDH 84
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 68 YMLRRPALEDYVVL-MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKA 126
Query: 263 MKGKGKIVACELNKERVRRLKDTIK 287
+ +G++++ E+ K+ K K
Sbjct: 127 VGSQGRVISFEVRKDHHDLAKKNYK 151
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
+A+ + + + KVLD S G +++ K ++ V +
Sbjct: 40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINE--KYGAHTHGIDICSNIVNMANER 97
Query: 286 IKLSGAANIEVLHGDFLNLDPKD 308
+ + I D L + +
Sbjct: 98 VSGNN--KIIFEANDILTKEFPE 118
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 3e-04
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295
+ K K+L ++ G H+A + KG + A E +R L D NI
Sbjct: 69 VMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA--ERENII 125
Query: 296 VLHGDFLNLDPKDPAYSEVRAILLD 320
+ GD +V I D
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYED 150
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRL 282
+ + S V A+ K LD G +++LAA G + A + N + +
Sbjct: 15 YELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANV 70
Query: 283 KDTIKLSGAANIEVLHGDFLNLDPKDP 309
+ + N+ D NL
Sbjct: 71 ERIKSIENLDNLHTRVVDLNNLTFDRQ 97
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSG 290
+ AALAP+ G + D G+ +V G+ + E +R+ ++ I
Sbjct: 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL 102
Query: 291 AANIEVLHGDF 301
+ + + G
Sbjct: 103 SPRMRAVQGTA 113
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR--------LKDTI 286
A G VLD G + L+ GK++ ++ ++ +
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136
Query: 287 KLSGAANIEVLHGDFLNLDPKD 308
+N+ L G NL +
Sbjct: 137 GSPSRSNVRFLKGFIENLATAE 158
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AA 292
A +PG V ++ + L ++V + + E + A
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170
Query: 293 NIEVLHGDFLNLDPKDPA 310
I + D LD ++
Sbjct: 171 QITLHRQDAWKLDTREGY 188
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
G+ ++A P+ V+ G + A + ++V + +++ V +
Sbjct: 43 QTGRLLYLLARIKQPQ---LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99
Query: 285 TIKLSGAAN-IEVLHGDFLNLDPKDPAY 311
+ +G + +E+ GD L +
Sbjct: 100 MLHDNGLIDRVELQVGDPLGIAAGQRDI 127
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ A L + G +VLD G V LA ++ +++ +V + +G A
Sbjct: 53 MIALLDVRSGDRVLDVGCGIGKPAVRLAT--ARDVRVTGISISRPQVNQANARATAAGLA 110
Query: 293 N-IEVLHGDFLNLDPKD 308
N + + D ++L +D
Sbjct: 111 NRVTFSYADAMDLPFED 127
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 7e-04
Identities = 34/179 (18%), Positives = 55/179 (30%), Gaps = 26/179 (14%)
Query: 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 278
V ++ QG A V+D + G T+ LA K + A E N
Sbjct: 97 VAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTA 155
Query: 279 VRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP 338
L + IKL+ N+ + D +++ KD A R I+ + LD
Sbjct: 156 YHYLCENIKLNKLNNVIPILADNRDVELKDVA---DRVIMGYV-----HKTHKFLDKTFE 207
Query: 339 SHASG-----HTADPTEMERLNKLSAFQKKALRHALSF------------PGVERVVYS 380
H ++ + + A ++ PGV VV
Sbjct: 208 FLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLIDYEVRKIKKYAPGVWHVVVD 266
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-04
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAA 292
A+ +A ++ D + G +A + + ++ E ++E + +++L A
Sbjct: 29 ASLVADDRACRIADLGA--GAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA 86
Query: 293 N----IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL---PSHASGHT 345
IEVL D +G E H++ P + +G
Sbjct: 87 AFSARIEVLEADVTLRAKARVE---------------AGLPDEHFHHVIMNPPYNDAGDR 131
Query: 346 ADPTEMERL 354
P ++
Sbjct: 132 RTPDALKAE 140
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 441 | |||
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 100.0 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 100.0 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 100.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 100.0 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 100.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 100.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 100.0 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 100.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 100.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.75 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.7 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.67 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.66 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.64 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.63 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.61 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.6 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.59 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.56 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.56 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.53 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.53 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.52 | |
| 1tzv_A | 142 | NUSB protein, N utilization substance protein B ho | 99.52 | |
| 3d3b_A | 141 | Protein NUSB, N utilization substance protein B; N | 99.52 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.52 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.51 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.51 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.51 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.5 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.5 | |
| 3r2d_A | 149 | Protein NUSB, N utilization substance protein B; c | 99.48 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.48 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.48 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.47 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.47 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.46 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.45 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.45 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.44 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.43 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.43 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.42 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.4 | |
| 1eyv_A | 156 | NUSB protein, N-utilizing substance protein B homo | 99.39 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.39 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.38 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.38 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.38 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.38 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.38 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.37 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.36 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.35 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.34 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.34 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.34 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.34 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.32 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.31 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.31 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.31 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.31 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.31 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.3 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.3 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.29 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.29 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.28 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.28 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.27 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.27 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.27 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.26 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.26 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.26 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.26 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.25 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.24 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.23 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.23 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.23 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.22 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.22 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.22 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.22 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.22 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.21 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.21 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.21 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.21 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.21 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.21 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.2 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.2 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.2 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.2 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.19 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.19 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.19 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.17 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.17 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.17 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.17 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.16 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.16 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.16 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.16 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.15 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.15 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.15 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.14 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.13 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.13 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.13 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.13 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.13 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.12 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.11 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.1 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.1 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.1 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.1 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.1 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.1 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.09 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.09 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.09 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.09 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.08 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.06 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.04 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.04 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.04 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.03 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.03 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.03 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.02 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.01 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.0 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.0 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.0 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.99 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.99 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.98 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.98 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.98 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.98 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.98 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.97 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.97 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.96 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.96 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.96 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.96 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.95 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.95 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.94 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.94 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.94 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.94 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.93 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.93 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.93 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.91 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.9 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.9 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.9 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.9 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.9 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.89 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.89 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.89 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.89 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.88 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.87 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.87 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.87 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.87 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.87 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.86 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.86 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.85 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.85 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.84 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.84 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.84 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.84 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.84 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.83 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.83 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.82 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.82 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.82 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.81 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.81 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.81 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.81 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.8 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.8 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.8 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.8 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.8 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.79 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.79 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.79 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.78 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.78 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.78 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.77 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.76 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.75 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.75 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.75 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.75 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.74 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.73 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.73 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.72 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.71 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.7 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.7 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.7 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.69 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.69 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.68 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.68 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.68 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.67 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.66 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.66 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.65 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.65 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.65 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.63 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.62 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.58 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.57 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.56 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.55 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.54 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.54 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.53 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.53 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.52 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.52 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.52 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.52 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.51 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.5 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.5 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.49 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.48 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.46 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.46 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.44 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.4 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.36 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.36 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.36 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.33 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.32 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.32 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.3 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.29 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.26 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.26 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.25 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.2 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.2 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.15 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.12 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.11 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.11 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.97 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.94 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 97.94 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.88 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.88 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.86 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.84 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.82 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.75 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.75 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.7 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.68 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.65 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.64 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.64 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.57 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.51 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.4 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.32 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.32 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.32 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.29 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.27 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.26 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.25 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.22 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.13 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.12 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.08 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.06 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 96.89 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.67 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.65 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 96.0 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 95.68 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.59 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 95.51 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.17 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 94.76 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 93.36 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.05 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.0 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.45 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 91.09 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 90.83 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 90.31 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 90.3 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 89.51 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 89.35 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.32 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 88.99 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 88.75 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 88.47 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 88.45 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 88.29 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 88.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 87.99 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 87.83 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 87.5 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 87.48 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 87.48 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 87.43 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 87.32 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 87.27 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 87.19 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 87.02 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 86.86 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.76 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 86.36 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 86.34 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 86.29 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 86.26 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.2 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 85.99 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 85.84 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 85.75 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 85.63 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 85.62 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 85.61 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.35 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 85.2 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 85.13 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 85.01 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 84.77 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 84.74 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 84.7 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 84.46 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 84.31 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 84.2 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 83.73 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 83.58 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 83.48 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 83.46 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 83.39 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 83.39 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 83.38 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 83.33 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 83.21 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 83.15 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 83.03 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 82.85 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 82.66 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 82.58 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 82.47 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 82.37 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 82.25 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 82.14 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 82.12 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 82.05 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 81.93 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 81.9 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 81.87 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 81.37 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 81.34 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 81.21 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 81.11 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 81.07 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 81.02 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 80.78 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 80.47 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 80.46 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 80.45 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 80.45 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 80.44 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 80.27 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 80.22 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 80.21 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 80.15 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 80.14 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 80.13 |
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-60 Score=490.34 Aligned_cols=385 Identities=23% Similarity=0.243 Sum_probs=316.1
Q ss_pred HHHHHHHHHHHHHHHccChhhHH-HHhhhhhhcCCCc-cCHHHHHHHHHHHHhcHHHHHHHhhhhhccccccc----chH
Q 013515 32 YFARREAAKVLRLVLRGDARRRA-VGSIKSLVYSPSV-KNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQE 105 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~~-~~~~~~~~~~~~~-~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~----~~~ 105 (441)
+++|+.|+++|++++.++.+++. +..+... ...+. +||+++++|||||+|++..||++|.+ +++++.+ ..+
T Consensus 11 ~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~-~~l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~--~~~~~~~~~~~~~~ 87 (450)
T 2yxl_A 11 PPKGIRAIIEAIRLGEIIKPSQYAKREAFKK-HDVEEAWLNRVLTMIFYDIMKKQGLIDKVIKE--IVGVTPLILDPWLR 87 (450)
T ss_dssp CHHHHHHHHHHHHHTTTSSSTHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHhcCCcHHHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH--hccCChhhcCHHHH
Confidence 46999999999999887666653 3332211 23456 79999999999999999999999997 4555433 247
Q ss_pred HHHHHHHHHHHhcCCCCchHHHH----HHHHHhhHH-------HH------------------------HHHHHHHHHcc
Q 013515 106 ELVYILTYDILFGQEISLVGDAE----KFLMLHKGA-------IQ------------------------LALAQLLVRNK 150 (441)
Q Consensus 106 ~lL~l~~yql~f~~~ip~~~~i~----~~v~~~k~~-------~~------------------------~~l~~~~~~~~ 150 (441)
.+||+++||++| ++|.+++++ ++|+.+|.. +. ++++.|+.+++
T Consensus 88 ~iLrla~yell~--~ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~~~~~~~~~~~~~~~~~P~w~~~~~ 165 (450)
T 2yxl_A 88 AALRVAVDIALF--HDPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIERV 165 (450)
T ss_dssp HHHHHHHHHHHH--SCBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCCCCCCSHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhccccccchhhhhhhHhcCcHHHHHHH
Confidence 899999999999 599999999 999887641 11 12233433322
Q ss_pred c----ccHHHHHHhhCCCC-CCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCccc
Q 013515 151 V----KSIEDLMALYQTPD-VPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224 (441)
Q Consensus 151 ~----~~~e~~~~~~~~~~-~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~ 224 (441)
. ...+++++ +++ .++|+++|||+.+++++++.+.|++ |+.+++++++|+++.++....+..++.|.+|.++
T Consensus 166 ~~~~g~~~~~~~~---a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 242 (450)
T 2yxl_A 166 KGILGDETEDFFR---SVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKII 242 (450)
T ss_dssp HHHHGGGHHHHHH---HHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEECSSCTTEEEEESCCCTTSCHHHHTTSEE
T ss_pred HHHhhHHHHHHHH---hcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceecCccCceEEeCCCCCcccCchhhCceEE
Confidence 1 22334443 445 6889999999999999999999976 7888889999999999655678999999999999
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
+||.+|++++.++++++|++|||+|||||++|++++..+++.++|+|+|+++.+++.++++++++|+.++.++++|+..+
T Consensus 243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~ 322 (450)
T 2yxl_A 243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKA 322 (450)
T ss_dssp ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCC
T ss_pred ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhc
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999999887
Q ss_pred CCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+...+ .+.||+|++||||||+|+++++||++|. ++++++..++.+|.++|.+++++++ ||.|||+|||
T Consensus 323 ~~~~~-~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~----------~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 323 PEIIG-EEVADKVLLDAPCTSSGTIGKNPELRWR----------LREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp SSSSC-SSCEEEEEEECCCCCGGGTTTSTTHHHH----------CCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred chhhc-cCCCCEEEEcCCCCCCeeeccChhhhhh----------CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 63221 1579999999999999999999998763 2567889999999999999999988 7999999999
Q ss_pred CCChhcHHHHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 384 IHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 384 ~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
++++|||++|.+||+ .+++|++++..+.| .. ......+++.|+.+.+.|+|+
T Consensus 392 ~~~~ene~~v~~~l~--~~~~~~~~~~~~~~--~~--~~~~~~~~~~P~~~~~dGff~ 443 (450)
T 2yxl_A 392 IFKEENEKNIRWFLN--VHPEFKLVPLKSPY--DP--GFLEGTMRAWPHRHSTIGFFY 443 (450)
T ss_dssp CCGGGTHHHHHHHHH--HCSSCEECCCCSSS--EE--CSSTTCEEECHHHHSSCCEEE
T ss_pred CChhhHHHHHHHHHH--hCCCCEEeeccccc--cc--ccCCCeEEECCCCCCCCceEE
Confidence 999999999999995 46789988766556 11 112234889999999999984
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=467.33 Aligned_cols=377 Identities=21% Similarity=0.254 Sum_probs=307.7
Q ss_pred HHHHHHHHHHHHHHHccCh-hhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccccc----chHH
Q 013515 32 YFARREAAKVLRLVLRGDA-RRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~-~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~----~~~~ 106 (441)
+.+|+.|+++|++++.++. ..+++... ....+.+|++++++|||||+|++..||++|.+ +++++.. ..+.
T Consensus 5 ~~aR~~A~~~L~~~~~~~~~~~~~l~~~---~~~~~~~dr~~~~~lv~gvlr~~~~ld~~i~~--~~~~~~~~~~~~~~~ 79 (429)
T 1sqg_A 5 RNLRSMAAQAVEQVVEQGQSLSNILPPL---QQKVSDKDKALLQELCFGVLRTLSQLDWLINK--LMARPMTGKQRTVHY 79 (429)
T ss_dssp CCHHHHHHHHHHHHHHHCCCHHHHHHHH---HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSSCCCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHH---HhhCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--hcCCChhhcCHHHHH
Confidence 4589999999999977543 34343321 12345689999999999999999999999997 5555432 2488
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhH-------HHHHH------------------------HHHHHHHccc----
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKG-------AIQLA------------------------LAQLLVRNKV---- 151 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~-------~~~~~------------------------l~~~~~~~~~---- 151 (441)
+||+++||++|+ ++|.+++++++|+.+|. .+.++ ++.|+.+++.
T Consensus 80 iLrl~~yel~~~-~~p~~~~ineaVelak~~~~~~~~~fvN~vL~~~~r~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~g 158 (429)
T 1sqg_A 80 LIMVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP 158 (429)
T ss_dssp HHHHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTSGGGGCSCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhC-CCCchHhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhcccccchhhhhhhcCcHHHHHHHHHHhh
Confidence 999999999999 59999999999987652 11111 2233332221
Q ss_pred ccHHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhh
Q 013515 152 KSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS 230 (441)
Q Consensus 152 ~~~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss 230 (441)
...+++++ +.+.++|+++|||+.+.+++++.+.|++ |+..++++++|+++.++....+..++.|.+|.+++||.+|
T Consensus 159 ~~~~~~~~---~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s 235 (429)
T 1sqg_A 159 EQWQSIVE---ANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 235 (429)
T ss_dssp TTHHHHHH---HHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSEEECCHHH
T ss_pred HHHHHHHH---hCCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCEEEECCCCCcccChHHhCCCeEeeCHHH
Confidence 22333443 3456889999999999999999999876 7888888999999999877788999999999999999999
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
++++.++++++|++|||+|||||++|.++++.+++ ++|+|+|+++.+++.++++++++|+ ++.++++|+..++...+
T Consensus 236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~- 312 (429)
T 1sqg_A 236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCG- 312 (429)
T ss_dssp HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHT-
T ss_pred HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcc-
Confidence 99999999999999999999999999999999755 8999999999999999999999998 47899999987652111
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhc
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~EN 389 (441)
.++||+|++||||||+|+++++||++|. ++++++..++.+|.++|.+++++++ ||.|||||||++++||
T Consensus 313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~----------~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~en 382 (429)
T 1sqg_A 313 EQQFDRILLDAPCSATGVIRRHPDIKWL----------RRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN 382 (429)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHH----------CCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGT
T ss_pred cCCCCEEEEeCCCCcccccCCCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhH
Confidence 1579999999999999999999998763 3578899999999999999999887 7999999999999999
Q ss_pred HHHHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 390 EDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 390 e~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
|++|.++|+ .+++|++++ + |. . ....+++.|+.+.+.|+|+
T Consensus 383 e~~v~~~l~--~~~~~~~~~--~-~~----~--~~~~~~~~P~~~~~dGff~ 423 (429)
T 1sqg_A 383 SLQIKAFLQ--RTADAELCE--T-GT----P--EQPGKQNLPGAEEGDGFFY 423 (429)
T ss_dssp HHHHHHHHH--HCTTCEECS--S-BC----S--SSBSEEECCCTTSCCSEEE
T ss_pred HHHHHHHHH--hCCCCEEeC--C-CC----C--CCCeEEECCCCCCCCceEE
Confidence 999999995 467898866 2 21 1 1223788999999999984
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=411.40 Aligned_cols=267 Identities=42% Similarity=0.667 Sum_probs=218.0
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHcc-cCcccc------------------cCCCCCeEEeCCCCCCCCChhhhcCcccc
Q 013515 165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQK------------------DDLVPDLLILPPGCDLHVHPLIVNGCVFL 225 (441)
Q Consensus 165 ~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~g~~~~ 225 (441)
..++|+|+|||++|++++++++.|++ ++.+++ ++++|+++.++++..+..+++|++|.+++
T Consensus 7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~ 86 (309)
T 2b9e_A 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLIL 86 (309)
T ss_dssp --CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEE
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEEE
Confidence 34789999999999999999999976 665444 35678888888667899999999999999
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
||.+|++++.++++++|++|||+|||||+||+++++++++.++|+|+|+++.+++.+++|++++|+.||+++++|+.++.
T Consensus 87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~ 166 (309)
T 2b9e_A 87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS 166 (309)
T ss_dssp CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcC
Confidence 99999999999999999999999999999999999998878999999999999999999999999999999999998876
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH 385 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~ 385 (441)
.....+.+||+||+||||||+|+++++||++|... ++++++..++.+|++||.+|+++++||+|||||||++
T Consensus 167 ~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~--------~~~~~~~~l~~~Q~~iL~~a~~~l~gG~lvYsTCs~~ 238 (309)
T 2b9e_A 167 PSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGT--------PSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLC 238 (309)
T ss_dssp TTCGGGTTEEEEEECCCCCC--------------------------CCHHHHHHHHHHHHHHHTTCTTCCEEEEEESCCC
T ss_pred ccccccCCCCEEEEcCCcCCCCCCccCCChhhhcc--------CCHHHHHHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 54322357999999999999999999999866431 3567899999999999999999888999999999999
Q ss_pred ChhcHHHHHHHhchhcCCC-eEEecCCCCCCCccccc--cccceeeeecccCCCCCCCC
Q 013515 386 QVENEDVIKSVLPIAMSFG-FQLATPFPNGTAEASQF--LKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~f~p~~~~~~g~~~ 441 (441)
++|||+||.+||+ .+++ |++++..+.|...+... ....++++.|+.+.+.|+|+
T Consensus 239 ~~Ene~~v~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 295 (309)
T 2b9e_A 239 QEENEDVVRDALQ--QNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFV 295 (309)
T ss_dssp GGGTHHHHHHHHT--TSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHHHSSCSEEE
T ss_pred hHHhHHHHHHHHH--hCCCcEEEeccccccccccccccCCCCCeEEECCCCCCCCCeEE
Confidence 9999999999995 4667 99988888887554321 12234899999999999994
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=409.31 Aligned_cols=267 Identities=27% Similarity=0.351 Sum_probs=231.3
Q ss_pred cHHHHHHhhCCCCCC-CCceEEecCCCCCHHHHHHHHcccCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhH
Q 013515 153 SIEDLMALYQTPDVP-KPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASS 231 (441)
Q Consensus 153 ~~e~~~~~~~~~~~~-~p~~~RvN~~k~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~ 231 (441)
..+++++.+ +.+ +|+++|||++|++++++.+.| ++.+++.+|+|+++.+.....+..+++|.+|.+++||.+|+
T Consensus 17 e~~~~l~a~---~~~~~~~~lRvN~lk~~~~~~~~~l--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~G~~~vQd~ss~ 91 (464)
T 3m6w_A 17 EFPAFLKAL---TEGKRTYGLRVNTLKLPPEAFQRIS--PWPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQ 91 (464)
T ss_dssp GHHHHHHHH---HTSCCCCEEEECTTTCCHHHHHHHC--SSCCEEETTEEEEEECCTTCCCSSSHHHHTTSEEECCTTTH
T ss_pred HHHHHHHHc---CCCCCCeEEEEcCCCCCHHHHHHHc--CCCceecCCCCceEEECCCCCcccChHHhCCeEEEECHHHH
Confidence 356666544 557 899999999999999998887 57778899999999998666788999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+++.++++++|++|||+|||||++|+++++++++.++|+|+|+++.+++.+++|++++|+. |.++++|+..+.....
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~-- 168 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFG-- 168 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHC--
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhcc--
Confidence 9999999999999999999999999999999987799999999999999999999999998 9999999887653111
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
+.||+|++||||||+|+++++||+.|. ++++++..++.+|.++|.+|+++++ ||+|||||||++++|||
T Consensus 169 ~~FD~Il~D~PcSg~G~~rr~pd~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne 238 (464)
T 3m6w_A 169 TYFHRVLLDAPCSGEGMFRKDREAARH----------WGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENE 238 (464)
T ss_dssp SCEEEEEEECCCCCGGGTTTCTTSGGG----------CCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTH
T ss_pred ccCCEEEECCCcCCccccccChHHhhh----------cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCH
Confidence 679999999999999999999998653 3578999999999999999999988 79999999999999999
Q ss_pred HHHHHHhchhcCCCeEEecCCC---------CCCCccccccccceeeeecccCCCCCCCC
Q 013515 391 DVIKSVLPIAMSFGFQLATPFP---------NGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
++|.+||+ .+++|++++..+ .|........ ..+++.|+.+.+.|+|+
T Consensus 239 ~vv~~~l~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~P~~~~~dGfF~ 294 (464)
T 3m6w_A 239 GVVAHFLK--AHPEFRLEDARLHPLFAPGVPEWGEGNPELL--KTARLWPHRLEGEGHFL 294 (464)
T ss_dssp HHHHHHHH--HCTTEEEECCCCSTTSEECCGGGTTTCGGGG--GSEEECTTTSSSSCEEE
T ss_pred HHHHHHHH--HCCCcEEEecccccccccCcccccccccccC--CeEEECCCCCCceeEEE
Confidence 99999996 367898876432 2433322222 24899999999999995
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=381.16 Aligned_cols=283 Identities=28% Similarity=0.380 Sum_probs=228.9
Q ss_pred HHHHHHHHHccc----ccHHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCC-CCCC
Q 013515 140 LALAQLLVRNKV----KSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG-CDLH 213 (441)
Q Consensus 140 ~~l~~~~~~~~~----~~~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~-~~l~ 213 (441)
++++.|+.+++. ...++++ ++++.++|+++|||++|.+++++.+.|++ ++.+++.+|+|+++.+..+ ..+.
T Consensus 14 ~~~P~w~~~~~~~~~g~~~~~~~---~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (315)
T 1ixk_A 14 LGYSKLFADRYFQLWGERAIRIA---EAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSIT 90 (315)
T ss_dssp TTCCHHHHHHHHHHHTTHHHHHH---HHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCGG
T ss_pred hCCcHHHHHHHHHHccHHHHHHH---HHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEEEeCCCCCcc
Confidence 344555544332 2344444 45567899999999999999999999977 7888888999999888533 4588
Q ss_pred CChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
.++.|.+|++++||.+|++++.++++++|++|||+|||+|++|.++++.+++.++|+|+|+++.+++.++++++++|+.+
T Consensus 91 ~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~ 170 (315)
T 1ixk_A 91 STPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN 170 (315)
T ss_dssp GSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS
T ss_pred cChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999999999999998777899999999999999999999999989
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 013515 294 IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373 (441)
Q Consensus 294 v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~ 373 (441)
++++++|+..++... ++||+|++||||||+|+++++||++|. ++.+++..++..|.++|.+++++++
T Consensus 171 v~~~~~D~~~~~~~~---~~fD~Il~d~Pcsg~g~~~~~p~~~~~----------~~~~~~~~~~~~q~~~L~~~~~~Lk 237 (315)
T 1ixk_A 171 VILFHSSSLHIGELN---VEFDKILLDAPCTGSGTIHKNPERKWN----------RTMDDIKFCQGLQMRLLEKGLEVLK 237 (315)
T ss_dssp EEEESSCGGGGGGGC---CCEEEEEEECCTTSTTTCC------------------CCHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred EEEEECChhhccccc---ccCCEEEEeCCCCCcccccCChhHhhc----------CCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998876422 579999999999999999999998653 4689999999999999999999887
Q ss_pred -CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEecCC------CCCCCccccccccceeeeecccCCCCCCCC
Q 013515 374 -VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPF------PNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 374 -~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
||.|||||||++++|||++|.++|+. .+|++++.. +.|...........++++.|+.+.+.|+|+
T Consensus 238 pGG~lv~stcs~~~~Ene~~v~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 309 (315)
T 1ixk_A 238 PGGILVYSTCSLEPEENEFVIQWALDN---FDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFI 309 (315)
T ss_dssp EEEEEEEEESCCCGGGTHHHHHHHHHH---SSEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEE
T ss_pred CCCEEEEEeCCCChHHhHHHHHHHHhc---CCCEEecCCccccCcccccccccccccCCEEEECCCCCCcccEEE
Confidence 79999999999999999999999963 468876532 111111001101234899999999999984
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-49 Score=402.11 Aligned_cols=260 Identities=24% Similarity=0.274 Sum_probs=220.2
Q ss_pred HHHHHHhhCCCCCCCC-ceEEecCCCCCHHHHHHHHcccCccc---ccCCCCCeEEeCCCCCCCCChhhhcCcccccchh
Q 013515 154 IEDLMALYQTPDVPKP-RYVRVNTLKMDVDSAVLELGKQFVVQ---KDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 229 (441)
Q Consensus 154 ~e~~~~~~~~~~~~~p-~~~RvN~~k~~~~~~~~~L~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~s 229 (441)
.+++++.+ +.++| +++|||++|+ +++.+.+ ++.++ +.+|+|+++. . ..+..+++|.+|.+++||.+
T Consensus 24 ~~~~~~a~---~~~~~~~~lRvN~lk~--~~~~~~~--~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~G~~~vQd~s 93 (456)
T 3m4x_A 24 ASDFFSAL---EQGSVKKGFRWNPLKP--AGLDMVQ--TYHSEELQPAPYSNEGFL-G--TVNGKSFLHQAGYEYSQEPS 93 (456)
T ss_dssp HHHHHHHH---HHCCCCCEEECCTTST--THHHHHH--HHTCSSCCBCTTCTTEEE-S--CCCTTSHHHHTTSCEECCTT
T ss_pred HHHHHHHc---CCCCCCcEEEEcCccH--HHHHHhc--CCcccccCCCCCCcceEE-c--CCCCCChHHhCCcEEEECHH
Confidence 55666543 55788 9999999998 6666554 45555 7899999988 2 34688999999999999999
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
|++++.++++++|++|||+|||||++|+++++++++.++|+|+|+++.+++.+++|++++|+.||.++++|+..+....+
T Consensus 94 s~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~ 173 (456)
T 3m4x_A 94 AMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS 173 (456)
T ss_dssp THHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhcc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999987653211
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
+.||+||+||||||+|+++++||++|. ++++++..++.+|+++|.+|+++++ ||+|||||||++++|
T Consensus 174 --~~FD~Il~DaPCSg~G~~rr~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE 241 (456)
T 3m4x_A 174 --GFFDRIVVDAPCSGEGMFRKDPNAIKE----------WTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEE 241 (456)
T ss_dssp --TCEEEEEEECCCCCGGGTTTCHHHHHH----------CCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGG
T ss_pred --ccCCEEEECCCCCCccccccCHHHhhh----------cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccccc
Confidence 679999999999999999999998653 3578899999999999999999988 799999999999999
Q ss_pred cHHHHHHHhchhcCCCeEEecCCC---------CCCCccccccccceeeeecccCCCCCCCC
Q 013515 389 NEDVIKSVLPIAMSFGFQLATPFP---------NGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
||+||.+||+. ++ |++++..+ .|.... .. ...+++.|+.+.+.|+|+
T Consensus 242 ne~vv~~~l~~--~~-~~l~~~~~~~~~~~~~~~~~~~~-~~--~~~~r~~P~~~~~dGFF~ 297 (456)
T 3m4x_A 242 NEEIISWLVEN--YP-VTIEEIPLTQSVSSGRSEWGSVA-GL--EKTIRIWPHKDQGEGHFV 297 (456)
T ss_dssp THHHHHHHHHH--SS-EEEECCCCSSCCEECCGGGSSST-TG--GGSEEECTTTSSSSCEEE
T ss_pred CHHHHHHHHHh--CC-CEEEecccccccccccccccccc-cc--CCeEEECCCCCCCcCeEE
Confidence 99999999963 44 88876432 233221 11 224899999999999995
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=394.97 Aligned_cols=270 Identities=25% Similarity=0.293 Sum_probs=226.8
Q ss_pred HHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCC----CCCCChhhhcCcccccchh
Q 013515 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGC----DLHVHPLIVNGCVFLQGKA 229 (441)
Q Consensus 155 e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~g~~~~Qd~s 229 (441)
+++++. .+.++|+++|||++|++++++.+.|++ ++.+++.+|+|+++.+.... .+..+++|.+|.+++||.+
T Consensus 27 ~~~~~a---~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~ 103 (479)
T 2frx_A 27 DDFLAA---CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEAS 103 (479)
T ss_dssp HHHHHH---HTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC---------CGGGSHHHHTTSEEECCHH
T ss_pred HHHHHh---cCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEEEecCcccccCcccChHHhCcEEEEECHH
Confidence 555554 456889999999999999999999976 78888899999998875322 5788999999999999999
Q ss_pred hHHHHHHhCCC--CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 230 SSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 230 s~l~~~~l~~~--~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
|++++.+|++. +|++|||+|||||++|+++++++++.+.|+|+|+++.|++.+++|++++|+.||.++++|+..++..
T Consensus 104 s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~ 183 (479)
T 2frx_A 104 SMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA 183 (479)
T ss_dssp HHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH
T ss_pred HHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh
Confidence 99999999998 9999999999999999999999877799999999999999999999999999999999999887531
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ 386 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~ 386 (441)
.. +.||+|++||||||+|+++++||+.|. |+++++..++.+|.++|.+|+++++ ||+|||||||+++
T Consensus 184 ~~--~~fD~Il~D~PcSg~G~~~~~pd~~~~----------~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~ 251 (479)
T 2frx_A 184 VP--EMFDAILLDAPCSGEGVVRKDPDALKN----------WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ 251 (479)
T ss_dssp ST--TCEEEEEEECCCCCGGGGGTCTTSSSS----------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred cc--ccCCEEEECCCcCCcccccCCHHHHhh----------cCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence 11 579999999999999999999998552 4789999999999999999999887 7999999999999
Q ss_pred hhcHHHHHHHhchhcCCCe-EEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 387 VENEDVIKSVLPIAMSFGF-QLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 387 ~ENe~vV~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+|||+||.++|+. ++++ ++++..+.|+...........+++.|+.+.+.|+|+
T Consensus 252 ~Ene~vv~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~dGfF~ 305 (479)
T 2frx_A 252 EENEAVCLWLKET--YPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFV 305 (479)
T ss_dssp TTTHHHHHHHHHH--STTTEEECCCTTSSTTGGGGBCTTSCEEECTTTTTSCCEEE
T ss_pred ccCHHHHHHHHHH--CCCceecccccccccccccccccCCeEEECCCCCCcCccEE
Confidence 9999999999963 5565 444433334322111112233899999999999984
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=358.58 Aligned_cols=261 Identities=20% Similarity=0.200 Sum_probs=193.8
Q ss_pred CCCCceEEecCCCCCHHHHHHHHcc-cCc-----------c----------cccC-CCCCe--EEeCCCCCCCCChhhhc
Q 013515 166 VPKPRYVRVNTLKMDVDSAVLELGK-QFV-----------V----------QKDD-LVPDL--LILPPGCDLHVHPLIVN 220 (441)
Q Consensus 166 ~~~p~~~RvN~~k~~~~~~~~~L~~-~~~-----------~----------~~~~-~~~~~--~~~~~~~~l~~~~~~~~ 220 (441)
.+++..+|+|++. +.+++.+.|+. +.. . .+.. .++.. ..+.+.+++...|.|++
T Consensus 44 ~~~~~~a~vN~f~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~~p~~~~ 122 (359)
T 4fzv_A 44 SEQKYGALVNNFA-AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISRFPPARP 122 (359)
T ss_dssp SCCCCEEEECTTS-CHHHHHHHHHHTTCEEHHHHHHHTTTCCC-----CCSSCHHHHSCSSCCEEECCTTCCCCCCCCCB
T ss_pred CcchhEEEeccCC-ChHHHHHHHHhccCccchhhhhcccccccccccccCCCcccccCCccceEEecCCCChhcCCCccc
Confidence 4667889999986 56777777764 210 0 0000 01111 12233456778888888
Q ss_pred Cc-----ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC----
Q 013515 221 GC-----VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---- 291 (441)
Q Consensus 221 g~-----~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---- 291 (441)
|. |++||.+||+++.+|+++||++|||+||||||||++|++++. .+.|+|+|+++.|++.+++|++++|+
T Consensus 123 g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~ 201 (359)
T 4fzv_A 123 GSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIR 201 (359)
T ss_dssp CTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTT
T ss_pred CceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhc
Confidence 76 556669999999999999999999999999999999999764 48999999999999999999999986
Q ss_pred --CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCC--cccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 013515 292 --ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS--GTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH 367 (441)
Q Consensus 292 --~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~--G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~ 367 (441)
.++.+.+.|+..+.... .+.||+||+||||||+ |+++++||+.|. ++++++..++.+|++||.+
T Consensus 202 ~~~~v~v~~~D~~~~~~~~--~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~----------~~~~~~~~l~~lQ~~iL~~ 269 (359)
T 4fzv_A 202 DGNQVRVTSWDGRKWGELE--GDTYDRVLVDVPCTTDRHSLHEEENNIFKR----------SRKKERQILPVLQVQLLAA 269 (359)
T ss_dssp TSSSEEEECCCGGGHHHHS--TTCEEEEEEECCCCCHHHHTTCCTTCTTSG----------GGHHHHHTHHHHHHHHHHH
T ss_pred cCCceEEEeCchhhcchhc--cccCCEEEECCccCCCCCcccccChhhhhh----------CCHHHHHHHHHHHHHHHHH
Confidence 37899999998876432 2679999999999997 777888887553 4789999999999999999
Q ss_pred HhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcC-CCeEEe-cCCCCCCC-----ccccccccceeeeecccCCCCCC
Q 013515 368 ALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMS-FGFQLA-TPFPNGTA-----EASQFLKALSIYFEPIQWKTKKA 439 (441)
Q Consensus 368 a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~-~~~~~~-~~~~~~~~-----~~~~~~~~~~~~f~p~~~~~~g~ 439 (441)
|+++++ ||+|||||||++++|||+||++||+.... ..+++. ...+.|.. ..........+++.|+.+.+.|.
T Consensus 270 a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~r~~P~~~~~~gG 349 (359)
T 4fzv_A 270 GLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGP 349 (359)
T ss_dssp HHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHTTTCEECTTCSSSEEEECBTTBCCCC
T ss_pred HHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhCCCCcccccccccccccccccccccccCccccceEEECCCCCCCCCC
Confidence 999988 79999999999999999999999964211 111111 11111111 00111112347899999888774
Q ss_pred C
Q 013515 440 F 440 (441)
Q Consensus 440 ~ 440 (441)
|
T Consensus 350 F 350 (359)
T 4fzv_A 350 M 350 (359)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=338.30 Aligned_cols=254 Identities=28% Similarity=0.333 Sum_probs=203.2
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEe-CCCCCCCCChhhhcCcccccchhhHHHHHHhCCCCC
Q 013515 165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLIL-PPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG 242 (441)
Q Consensus 165 ~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g 242 (441)
..++|+|+|||+++.+++++.+.|++ ++.+++ +|+|+++.+ .....+..++.|..|++++||.+|++++.++++++|
T Consensus 6 ~~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g 84 (274)
T 3ajd_A 6 KGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK-TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPRED 84 (274)
T ss_dssp ---CCEEEEECTTTCCHHHHHHHHHTTTCEEEE-CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHHCCCTT
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHHCCCeecC-CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHhCCCCc
Confidence 35789999999999999999999977 677777 899999988 333567889999999999999999999999999999
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCCccEEEEcC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVRAILLDP 321 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~Il~Dp 321 (441)
++|||+|||+|++|.++++++.+.++|+|+|+++.+++.++++++++|+.++.++++|+..+.... ...++||+|++||
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 999999999999999999988777899999999999999999999999999999999998765310 0015799999999
Q ss_pred CCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchh
Q 013515 322 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 322 PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~ 400 (441)
||||+|+++++|. |+.+++..+...|.++|.+++++++ ||.|||+|||++++|||++|.++|+
T Consensus 165 Pcs~~g~~~~~p~--------------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~-- 228 (274)
T 3ajd_A 165 PCSGNIIKDKNRN--------------VSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQ-- 228 (274)
T ss_dssp CCC--------------------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHH--
T ss_pred CCCCCcccccCCC--------------CCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHH--
Confidence 9999999988751 3678888999999999999999887 7999999999999999999999995
Q ss_pred cCCCeEEecCC-CCCCC-ccccccccceeeeecccCC
Q 013515 401 MSFGFQLATPF-PNGTA-EASQFLKALSIYFEPIQWK 435 (441)
Q Consensus 401 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~f~p~~~~ 435 (441)
.+++|++++.. +.+.. ..+......++++.|+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 265 (274)
T 3ajd_A 229 KRNDVELIIIKANEFKGINIKEGYIKGTLRVFPPNEP 265 (274)
T ss_dssp HCSSEEEECCCSTTCTTSCEEECSSTTCEEECTTSCC
T ss_pred hCCCcEEecCccccccCcccccccCCCeEEECCCCCC
Confidence 46789887643 22211 1111112334889999864
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=171.38 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=129.3
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
...+++|.|..|..+..++..++ ++|++|||+|||+|++|++++.. + ..|+++|+|+.+++.+++|++.+|+.+
T Consensus 190 ~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~--g-a~V~avDis~~al~~a~~n~~~ng~~~- 263 (393)
T 4dmg_A 190 ALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK--G-AYALAVDKDLEALGVLDQAALRLGLRV- 263 (393)
T ss_dssp TTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC-
T ss_pred hhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC-
Confidence 46789999999999988887665 46999999999999999999885 3 349999999999999999999999863
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG- 373 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~- 373 (441)
.+.++|+.++..... +.||+|++||||... +.+++......+.+++..++++++
T Consensus 264 ~~~~~D~~~~l~~~~--~~fD~Ii~dpP~f~~-----------------------~~~~~~~~~~~~~~ll~~a~~~Lkp 318 (393)
T 4dmg_A 264 DIRHGEALPTLRGLE--GPFHHVLLDPPTLVK-----------------------RPEELPAMKRHLVDLVREALRLLAE 318 (393)
T ss_dssp EEEESCHHHHHHTCC--CCEEEEEECCCCCCS-----------------------SGGGHHHHHHHHHHHHHHHHHTEEE
T ss_pred cEEEccHHHHHHHhc--CCCCEEEECCCcCCC-----------------------CHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466899887643221 349999999998432 233566778889999999999988
Q ss_pred CcEEEEEcCCCCChhcH--HHHHHHhchhcCCCeEE
Q 013515 374 VERVVYSTCSIHQVENE--DVIKSVLPIAMSFGFQL 407 (441)
Q Consensus 374 ~G~lvYsTCS~~~~ENe--~vV~~~l~~~~~~~~~~ 407 (441)
||.|+|+|||.+..+++ ++|...+... ...+++
T Consensus 319 GG~Lv~~s~s~~~~~~~f~~~v~~a~~~~-g~~~~i 353 (393)
T 4dmg_A 319 EGFLWLSSCSYHLRLEDLLEVARRAAADL-GRRLRV 353 (393)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHH-TCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHh-CCeEEE
Confidence 79999999999999887 7777776433 334444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=152.15 Aligned_cols=144 Identities=19% Similarity=0.147 Sum_probs=104.2
Q ss_pred cchhhHHHHHHhC---CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 226 QGKASSMVAAALA---PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 226 Qd~ss~l~~~~l~---~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|..-+..+...++ +++|++|||+|||||++|.++++.+++.|+|+|+|+++.+++.+.+..+.. .||.++.+|+.
T Consensus 58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~ 135 (232)
T 3id6_C 58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADAR 135 (232)
T ss_dssp TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTT
T ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccc
Confidence 4343333333333 789999999999999999999999988899999999999988777666553 58999999998
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHH-HHhCCCC-CcEEEEE
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR-HALSFPG-VERVVYS 380 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~-~a~~~~~-~G~lvYs 380 (441)
.........++||+|++|.+- |+ |.++|. .+.++|+ ||.++++
T Consensus 136 ~~~~~~~~~~~~D~I~~d~a~---------~~--------------------------~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 136 FPQSYKSVVENVDVLYVDIAQ---------PD--------------------------QTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp CGGGTTTTCCCEEEEEECCCC---------TT--------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhhccccceEEEEecCCC---------hh--------------------------HHHHHHHHHHHhCCCCeEEEEE
Confidence 754221112689999999772 11 234443 3443666 7888865
Q ss_pred ---cC---CCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 381 ---TC---SIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 381 ---TC---S~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
+| |+.++||.+.+.++|+. .+|++.+
T Consensus 181 ik~~~~d~t~~~~e~~~~~~~~L~~---~gf~~~~ 212 (232)
T 3id6_C 181 IKARSIDVTKDPKEIYKTEVEKLEN---SNFETIQ 212 (232)
T ss_dssp EC-------CCSSSSTTHHHHHHHH---TTEEEEE
T ss_pred EccCCcccCCCHHHHHHHHHHHHHH---CCCEEEE
Confidence 99 99999999999899853 3688755
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-17 Score=165.26 Aligned_cols=163 Identities=19% Similarity=0.220 Sum_probs=128.8
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
...++.|+|+.|...+.+++.+ +|++|||+|||+|+++.+++.. ..+|+++|+++.+++.+++|++.+|+.++
T Consensus 187 ~~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~ 259 (382)
T 1wxx_A 187 RAGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNV 259 (382)
T ss_dssp STTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTE
T ss_pred hhcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 4567889999998887766554 6889999999999999999987 37999999999999999999999999889
Q ss_pred EEEeccCCCCCCCCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 013515 295 EVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~ 373 (441)
+++++|+.++..... ...+||+|++|||+.+.+ .+.+......+..++..++++++
T Consensus 260 ~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~Lk 316 (382)
T 1wxx_A 260 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG-----------------------KKDVERAYRAYKEVNLRAIKLLK 316 (382)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCS-----------------------TTSHHHHHHHHHHHHHHHHHTEE
T ss_pred eEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCC-----------------------hhHHHHHHHHHHHHHHHHHHhcC
Confidence 999999987643210 015799999999986532 22345667788899999999887
Q ss_pred -CcEEEEEcCCCCChhc--HHHHHHHhchhcCCCeEEe
Q 013515 374 -VERVVYSTCSIHQVEN--EDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 374 -~G~lvYsTCS~~~~EN--e~vV~~~l~~~~~~~~~~~ 408 (441)
||.|+++||+.+..++ +.++.+.+.. ....+++.
T Consensus 317 pgG~l~~~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~i 353 (382)
T 1wxx_A 317 EGGILATASCSHHMTEPLFYAMVAEAAQD-AHRLLRVV 353 (382)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 7999999999988775 5666655532 23345554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=160.47 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=123.5
Q ss_pred hhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 013515 216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NI 294 (441)
Q Consensus 216 ~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v 294 (441)
..+++|+|..|.....++..++ ++|++|||+|||+|+++.+++.. +..+|+++|+++.+++.+++|++.+|++ ++
T Consensus 194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v 269 (396)
T 2as0_A 194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 269 (396)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 4577899998988877776553 47899999999999999999875 3569999999999999999999999997 89
Q ss_pred EEEeccCCCCCCCCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 013515 295 EVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~ 373 (441)
+++++|+.+...... ...+||+|++|||+.+.+ ...+......+..++..++++++
T Consensus 270 ~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~Lk 326 (396)
T 2as0_A 270 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH-----------------------EKDLKAGLRAYFNVNFAGLNLVK 326 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS-----------------------GGGHHHHHHHHHHHHHHHHTTEE
T ss_pred eEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCC-----------------------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999877543100 015799999999975422 23345666778899999999988
Q ss_pred -CcEEEEEcCCCCChhc--HHHHHHHh
Q 013515 374 -VERVVYSTCSIHQVEN--EDVIKSVL 397 (441)
Q Consensus 374 -~G~lvYsTCS~~~~EN--e~vV~~~l 397 (441)
||.|+|+||+.+..++ ++++.+..
T Consensus 327 pgG~lv~~~~~~~~~~~~~~~~v~~~~ 353 (396)
T 2as0_A 327 DGGILVTCSCSQHVDLQMFKDMIIAAG 353 (396)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999876654 56666554
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-17 Score=162.61 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=126.7
Q ss_pred CChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-C
Q 013515 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-A 292 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~ 292 (441)
..+.+++|+|..|.....++..+ .+|++|||+|||+|+++++++.. +..+|+++|+++.+++.+++|++.+|+ +
T Consensus 196 ~~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~ 270 (396)
T 3c0k_A 196 IQHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDL 270 (396)
T ss_dssp TTTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred ccccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 34678899999999988887776 47899999999999999999885 346999999999999999999999998 6
Q ss_pred -cEEEEeccCCCCCCCCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC
Q 013515 293 -NIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS 370 (441)
Q Consensus 293 -~v~~~~~D~~~~~~~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~ 370 (441)
+++++++|+.++..... ...+||.|++|||+.+.+-- +. ......+..++..+++
T Consensus 271 ~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~----~~-------------------~~~~~~~~~~l~~~~~ 327 (396)
T 3c0k_A 271 SKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKS----QL-------------------MGACRGYKDINMLAIQ 327 (396)
T ss_dssp GGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSS----SS-------------------SCCCTHHHHHHHHHHH
T ss_pred cceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChh----HH-------------------HHHHHHHHHHHHHHHH
Confidence 89999999987643110 01579999999998654310 00 0111235678888988
Q ss_pred CCC-CcEEEEEcCCCCCh--hcHHHHHHHhchhcCCCeEEe
Q 013515 371 FPG-VERVVYSTCSIHQV--ENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 371 ~~~-~G~lvYsTCS~~~~--ENe~vV~~~l~~~~~~~~~~~ 408 (441)
+++ +|.+++|+|+.+.. +++++|.+.+... ...+++.
T Consensus 328 ~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~-g~~~~~i 367 (396)
T 3c0k_A 328 LLNEGGILLTFSCSGLMTSDLFQKIIADAAIDA-GRDVQFI 367 (396)
T ss_dssp TEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHH-TCCEEEE
T ss_pred hcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 887 78999999998876 6678887665432 3345543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=170.54 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=120.8
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
.+.++.|.|..|.....++..+. +|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++
T Consensus 516 ~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~ 590 (703)
T 3v97_A 516 TDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGR 590 (703)
T ss_dssp SSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCST
T ss_pred cccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 46789999999999998888764 5899999999999999998873 4578999999999999999999999986
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
+++++++|+.++.... .++||+|++||||.+.+.. ..++......+.+++..+.+++
T Consensus 591 ~v~~i~~D~~~~l~~~--~~~fD~Ii~DPP~f~~~~~---------------------~~~~~~~~~~~~~ll~~a~~~L 647 (703)
T 3v97_A 591 AHRLIQADCLAWLREA--NEQFDLIFIDPPTFSNSKR---------------------MEDAFDVQRDHLALMKDLKRLL 647 (703)
T ss_dssp TEEEEESCHHHHHHHC--CCCEEEEEECCCSBC----------------------------CCBHHHHHHHHHHHHHHHE
T ss_pred ceEEEecCHHHHHHhc--CCCccEEEECCccccCCcc---------------------chhHHHHHHHHHHHHHHHHHhc
Confidence 7999999998753222 1679999999999764321 0111234567789999999988
Q ss_pred C-CcEEEEEcCCCCChhcHHHHH
Q 013515 373 G-VERVVYSTCSIHQVENEDVIK 394 (441)
Q Consensus 373 ~-~G~lvYsTCS~~~~ENe~vV~ 394 (441)
+ ||.|++|+|+-....+++.+.
T Consensus 648 kpgG~L~~s~~~~~~~~~~~~l~ 670 (703)
T 3v97_A 648 RAGGTIMFSNNKRGFRMDLDGLA 670 (703)
T ss_dssp EEEEEEEEEECCTTCCCCHHHHH
T ss_pred CCCcEEEEEECCcccccCHHHHH
Confidence 7 799999999977666765554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-17 Score=154.58 Aligned_cols=199 Identities=11% Similarity=0.081 Sum_probs=120.4
Q ss_pred CCCCCCCCceEEecCCCCCHHHHH-HHHcc-cCcccccCCCCCeE-EeCCCCCCCCChhhhcCcccccchhhHHHHHHhC
Q 013515 162 QTPDVPKPRYVRVNTLKMDVDSAV-LELGK-QFVVQKDDLVPDLL-ILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA 238 (441)
Q Consensus 162 ~~~~~~~p~~~RvN~~k~~~~~~~-~~L~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~ 238 (441)
.+++..+++|.|+|+.+.+.+.+. +.|.. ++..... .....+ .+.+ ........+..+...+++..+.+++..++
T Consensus 30 ~~~~~~~~~~~r~~~~~~~~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (275)
T 1yb2_A 30 VSEDEYGKFDESTNSILVKGKMHHLGISRVIEPGDELI-VSGKSFIVSDF-SPMYFGRVIRRNTQIISEIDASYIIMRCG 107 (275)
T ss_dssp ECSSCCEEEETTTTEEEC-CCEEECC-CCCCCTTCEEE-ETTEEEEEECC-CGGGHHHHC------------------CC
T ss_pred EecCCCCceeccccceeccCCccchhheeCCCCCcEEE-ECCeEEEEeCC-CHHHHHhhccccccccChhhHHHHHHHcC
Confidence 455667899999997665433211 11111 1111111 111122 2221 12222344555667788888888888999
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.+|.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.++++++.. |.+++.+.++|+.+..+ . ++||+|
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~-~---~~fD~V 183 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-D---QMYDAV 183 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC-S---CCEEEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc-C---CCccEE
Confidence 999999999999999999999998666689999999999999999999998 88899999999987322 1 579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
++|+|. + ..+|..+.+.++ ||.+++++|+.. ....+.+.
T Consensus 184 i~~~~~---------~----------------------------~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~~~~ 223 (275)
T 1yb2_A 184 IADIPD---------P----------------------------WNHVQKIASMMKPGSVATFYLPNFD---QSEKTVLS 223 (275)
T ss_dssp EECCSC---------G----------------------------GGSHHHHHHTEEEEEEEEEEESSHH---HHHHHHHH
T ss_pred EEcCcC---------H----------------------------HHHHHHHHHHcCCCCEEEEEeCCHH---HHHHHHHH
Confidence 998872 1 145777888777 789999988642 22223333
Q ss_pred hchhcCCCeEEec
Q 013515 397 LPIAMSFGFQLAT 409 (441)
Q Consensus 397 l~~~~~~~~~~~~ 409 (441)
| ...+|+.++
T Consensus 224 l---~~~Gf~~~~ 233 (275)
T 1yb2_A 224 L---SASGMHHLE 233 (275)
T ss_dssp S---GGGTEEEEE
T ss_pred H---HHCCCeEEE
Confidence 3 235676544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=154.06 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=118.4
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
.+++++|.|..|.....++..++ .+|.+|||+|||+|+++++++.. +..+|+++|+++.+++.+++|++.+|++
T Consensus 188 ~~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~ 263 (385)
T 2b78_A 188 NDGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMA 263 (385)
T ss_dssp SSSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCT
T ss_pred cccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 45678899988888888877665 57899999999999999999874 3458999999999999999999999996
Q ss_pred cEEEEeccCCCCCCCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 013515 293 NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 371 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~ 371 (441)
+++++++|+.+..... ....+||+|++|||+.+.+-- .+......+.+++..+.++
T Consensus 264 ~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~-----------------------~~~~~~~~~~~ll~~~~~~ 320 (385)
T 2b78_A 264 NHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKK-----------------------EVFSVSKDYHKLIRQGLEI 320 (385)
T ss_dssp TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC----------------------------CCCCHHHHHHHHHHHHHHT
T ss_pred ceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChh-----------------------hHHHHHHHHHHHHHHHHHh
Confidence 8999999987643211 001479999999999653210 0012334567788999888
Q ss_pred CC-CcEEEEEcCCCCC--hhcHHHHHHHhc
Q 013515 372 PG-VERVVYSTCSIHQ--VENEDVIKSVLP 398 (441)
Q Consensus 372 ~~-~G~lvYsTCS~~~--~ENe~vV~~~l~ 398 (441)
++ +|.|++++|+-+. ++..+++...+.
T Consensus 321 L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~ 350 (385)
T 2b78_A 321 LSENGLIIASTNAANMTVSQFKKQIEKGFG 350 (385)
T ss_dssp EEEEEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 87 7899999998775 444566666553
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=148.42 Aligned_cols=166 Identities=18% Similarity=0.144 Sum_probs=119.2
Q ss_pred ChhhhcCcccccchhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++.|++..|......+...+. ..+|.+|||+|||+|+.++.++.. + .+|+++|+++.+++.+++|++.+|+++
T Consensus 126 ~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~ 202 (332)
T 2igt_A 126 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQ 202 (332)
T ss_dssp CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred CccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 456778999999988877777775 456889999999999999999874 3 399999999999999999999999864
Q ss_pred --EEEEeccCCCCCCCCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC
Q 013515 294 --IEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS 370 (441)
Q Consensus 294 --v~~~~~D~~~~~~~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~ 370 (441)
++++++|+.++..... ...+||+|++||||.+.+... +. + .....+..++..+.+
T Consensus 203 ~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~---~~-------------~------~~~~~~~~ll~~~~~ 260 (332)
T 2igt_A 203 APIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHG---EV-------------W------QLFDHLPLMLDICRE 260 (332)
T ss_dssp SCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTC---CE-------------E------EHHHHHHHHHHHHHH
T ss_pred cceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchH---HH-------------H------HHHHHHHHHHHHHHH
Confidence 9999999987643100 015799999999997755210 00 0 122345678999989
Q ss_pred CCC-CcE-EEEEcCCCCChhcHHHHHHHhch-hcCCCeEE
Q 013515 371 FPG-VER-VVYSTCSIHQVENEDVIKSVLPI-AMSFGFQL 407 (441)
Q Consensus 371 ~~~-~G~-lvYsTCS~~~~ENe~vV~~~l~~-~~~~~~~~ 407 (441)
+++ +|. ++.++|+... ++....+++.. +...++++
T Consensus 261 ~LkpgG~lli~~~~~~~~--~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 261 ILSPKALGLVLTAYSIRA--SFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp TBCTTCCEEEEEECCTTS--CHHHHHHHHHHHTTTSCSEE
T ss_pred hcCcCcEEEEEECCCCCC--CHHHHHHHHHHHHHHcCCeE
Confidence 887 675 6666676553 33444444432 22345444
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=141.77 Aligned_cols=167 Identities=16% Similarity=0.218 Sum_probs=110.9
Q ss_pred cCcccccchh-------hHHHHHHhCCC-CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 013515 220 NGCVFLQGKA-------SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (441)
Q Consensus 220 ~g~~~~Qd~s-------s~l~~~~l~~~-~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~ 291 (441)
.+..+.|+.. +.+++.++.+. ++.+|||+|||+|..+..++... + .+|+++|+++.+++.+++|++.+|+
T Consensus 20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~~ 97 (259)
T 3lpm_A 20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQL 97 (259)
T ss_dssp TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCCC
Confidence 3444555554 78888899888 89999999999999999998873 2 4999999999999999999999998
Q ss_pred C-cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCC-cccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 013515 292 A-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS-GTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 369 (441)
Q Consensus 292 ~-~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~-G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~ 369 (441)
. +++++++|+.++....+ .++||.|++|||+... +.....++... ...+ .........++..+.
T Consensus 98 ~~~v~~~~~D~~~~~~~~~-~~~fD~Ii~npPy~~~~~~~~~~~~~~~------------~~a~-~~~~~~~~~~l~~~~ 163 (259)
T 3lpm_A 98 EDQIEIIEYDLKKITDLIP-KERADIVTCNPPYFATPDTSLKNTNEHF------------RIAR-HEVMCTLEDTIRVAA 163 (259)
T ss_dssp TTTEEEECSCGGGGGGTSC-TTCEEEEEECCCC------------------------------------HHHHHHHHHHH
T ss_pred cccEEEEECcHHHhhhhhc-cCCccEEEECCCCCCCccccCCCCchHH------------Hhhh-ccccCCHHHHHHHHH
Confidence 5 69999999998764321 2689999999999766 21112221100 0000 111123357888888
Q ss_pred CCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 370 SFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 370 ~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
++++ +|.++++ ++.++...+...+. ..+|+...
T Consensus 164 ~~LkpgG~l~~~----~~~~~~~~~~~~l~---~~~~~~~~ 197 (259)
T 3lpm_A 164 SLLKQGGKANFV----HRPERLLDIIDIMR---KYRLEPKR 197 (259)
T ss_dssp HHEEEEEEEEEE----ECTTTHHHHHHHHH---HTTEEEEE
T ss_pred HHccCCcEEEEE----EcHHHHHHHHHHHH---HCCCceEE
Confidence 8887 6887774 23344444445553 34565543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-14 Score=140.76 Aligned_cols=148 Identities=25% Similarity=0.302 Sum_probs=117.4
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
++..-+..+..++...++..|||+|||+|..+..++...++..+|+++|+++.+++.+++|++..|+.+|++.++|+.++
T Consensus 187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 33334455566778889999999999999999999988645589999999999999999999999998899999999998
Q ss_pred CCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+... ..||.|++||||.- + ......+..++..++..+.+.++ ||.++++||
T Consensus 267 ~~~~---~~~D~Ii~npPyg~-----r-------------------~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~- 318 (354)
T 3tma_A 267 PRFF---PEVDRILANPPHGL-----R-------------------LGRKEGLFHLYWDFLRGALALLPPGGRVALLTL- 318 (354)
T ss_dssp GGTC---CCCSEEEECCCSCC----------------------------CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-
T ss_pred cccc---CCCCEEEECCCCcC-----c-------------------cCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC-
Confidence 7543 46899999999831 0 11123566788899999999886 799999988
Q ss_pred CCChhcHHHHHHHhchhcCCCeEEec
Q 013515 384 IHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 384 ~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
|+..+..+++ .+|+...
T Consensus 319 -----~~~~~~~~~~----~g~~~~~ 335 (354)
T 3tma_A 319 -----RPALLKRALP----PGFALRH 335 (354)
T ss_dssp -----CHHHHHHHCC----TTEEEEE
T ss_pred -----CHHHHHHHhh----cCcEEEE
Confidence 5677777763 5676644
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=132.84 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=98.8
Q ss_pred ccccchh-hHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcE
Q 013515 223 VFLQGKA-SSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANI 294 (441)
Q Consensus 223 ~~~Qd~s-s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----~~~v 294 (441)
..+|+.. ...+...+. +.++.+|||+|||+|.++.+++..+++.++|+++|+++.+++.+++++...| .+++
T Consensus 56 ~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v 135 (226)
T 1i1n_A 56 ATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV 135 (226)
T ss_dssp EEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred ceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE
Confidence 3444433 334445554 7889999999999999999999987666799999999999999999999876 4689
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG- 373 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~- 373 (441)
.++++|+....... ..||+|+++++|.. ++..+.+.++
T Consensus 136 ~~~~~d~~~~~~~~---~~fD~i~~~~~~~~--------------------------------------~~~~~~~~Lkp 174 (226)
T 1i1n_A 136 QLVVGDGRMGYAEE---APYDAIHVGAAAPV--------------------------------------VPQALIDQLKP 174 (226)
T ss_dssp EEEESCGGGCCGGG---CCEEEEEECSBBSS--------------------------------------CCHHHHHTEEE
T ss_pred EEEECCcccCcccC---CCcCEEEECCchHH--------------------------------------HHHHHHHhcCC
Confidence 99999987654322 57999999999721 1234556666
Q ss_pred CcEEEEEcCCCCChhcHH
Q 013515 374 VERVVYSTCSIHQVENED 391 (441)
Q Consensus 374 ~G~lvYsTCS~~~~ENe~ 391 (441)
||.+++++|+...+++..
T Consensus 175 gG~lv~~~~~~~~~~~~~ 192 (226)
T 1i1n_A 175 GGRLILPVGPAGGNQMLE 192 (226)
T ss_dssp EEEEEEEESCTTSCEEEE
T ss_pred CcEEEEEEecCCCceEEE
Confidence 799999999987766653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=133.36 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=115.4
Q ss_pred CcccccchhhHHHHHHhCC--CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 013515 221 GCVFLQGKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~--~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~ 298 (441)
+.++.+.....++..+++. .++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.+|++++.+++
T Consensus 87 ~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~ 165 (276)
T 2b3t_A 87 ATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ 165 (276)
T ss_dssp TSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 3344455555555554432 568899999999999999999876 4579999999999999999999999998899999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcc-------cccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGT-------AAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 371 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~-------~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~ 371 (441)
+|+.+.... ++||.|+++|||.+.+. ....|+..+- .. ......+..++..+.++
T Consensus 166 ~d~~~~~~~----~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~-----------~~---~~g~~~~~~~l~~~~~~ 227 (276)
T 2b3t_A 166 SDWFSALAG----QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALV-----------AA---DSGMADIVHIIEQSRNA 227 (276)
T ss_dssp CSTTGGGTT----CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTB-----------CH---HHHTHHHHHHHHHHGGG
T ss_pred cchhhhccc----CCccEEEECCCCCCccccccChhhhhcCcHHHHc-----------CC---CcHHHHHHHHHHHHHHh
Confidence 999875321 57999999999998753 2222222110 01 12224557899999998
Q ss_pred CC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 372 PG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 372 ~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
++ ||.++++++. .+.+.+.++++. .+|+.+.
T Consensus 228 LkpgG~l~~~~~~----~~~~~~~~~l~~---~Gf~~v~ 259 (276)
T 2b3t_A 228 LVSGGFLLLEHGW----QQGEAVRQAFIL---AGYHDVE 259 (276)
T ss_dssp EEEEEEEEEECCS----SCHHHHHHHHHH---TTCTTCC
T ss_pred cCCCCEEEEEECc----hHHHHHHHHHHH---CCCcEEE
Confidence 87 7888887554 344556666643 3564433
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=138.82 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=105.2
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEec
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHG 299 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~ 299 (441)
+++..|......+...+ ++|++|||+|||+|+.+..++... . .+|+|+|+++.+++.+++|++.+|+.+ ++++++
T Consensus 107 ~f~~~~~~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~-~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~ 182 (278)
T 2frn_A 107 MFSPANVKERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYG-K-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182 (278)
T ss_dssp CCCGGGHHHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHT-C-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred eEcCCcHHHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC
Confidence 33444445555555554 579999999999999999999873 2 389999999999999999999999965 999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
|+.++.. . .+||+|++|||++. ..++..+.+.++ ||.++
T Consensus 183 D~~~~~~-~---~~fD~Vi~~~p~~~------------------------------------~~~l~~~~~~LkpgG~l~ 222 (278)
T 2frn_A 183 DNRDFPG-E---NIADRILMGYVVRT------------------------------------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp CTTTCCC-C---SCEEEEEECCCSSG------------------------------------GGGHHHHHHHEEEEEEEE
T ss_pred CHHHhcc-c---CCccEEEECCchhH------------------------------------HHHHHHHHHHCCCCeEEE
Confidence 9998876 2 68999999999532 134666777676 79999
Q ss_pred EEcCCCC---ChhcHHHHHHHhchhcCCCeEE
Q 013515 379 YSTCSIH---QVENEDVIKSVLPIAMSFGFQL 407 (441)
Q Consensus 379 YsTCS~~---~~ENe~vV~~~l~~~~~~~~~~ 407 (441)
+++|+-. .++..+.+...++ ..+|++
T Consensus 223 ~~~~~~~~~~~~~~~~~i~~~~~---~~G~~~ 251 (278)
T 2frn_A 223 YHNTVPEKLMPREPFETFKRITK---EYGYDV 251 (278)
T ss_dssp EEEEEEGGGTTTTTHHHHHHHHH---HTTCEE
T ss_pred EEEeeccccccccHHHHHHHHHH---HcCCee
Confidence 9999842 3444455555553 345544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=146.77 Aligned_cols=130 Identities=13% Similarity=0.008 Sum_probs=100.8
Q ss_pred hcCcc-cccchhhHHHHH---HhCC--CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 219 VNGCV-FLQGKASSMVAA---ALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 219 ~~g~~-~~Qd~ss~l~~~---~l~~--~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
..++| ..|..+..+... .+.. ++|.+|||+|||+|++++.++..+++.++|+++|+++.+++.+++|++.+|+.
T Consensus 24 ~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~ 103 (392)
T 3axs_A 24 MPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP 103 (392)
T ss_dssp CCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 45555 356666655432 2222 57899999999999999999987655579999999999999999999999997
Q ss_pred c--EEEEeccCCCCCC-CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 013515 293 N--IEVLHGDFLNLDP-KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 369 (441)
Q Consensus 293 ~--v~~~~~D~~~~~~-~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~ 369 (441)
+ ++++++|+..+.. .. .+.||+|++||+|+. ..++..|+
T Consensus 104 ~~~v~v~~~Da~~~l~~~~--~~~fD~V~lDP~g~~------------------------------------~~~l~~a~ 145 (392)
T 3axs_A 104 EDRYEIHGMEANFFLRKEW--GFGFDYVDLDPFGTP------------------------------------VPFIESVA 145 (392)
T ss_dssp GGGEEEECSCHHHHHHSCC--SSCEEEEEECCSSCC------------------------------------HHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHhh--CCCCcEEEECCCcCH------------------------------------HHHHHHHH
Confidence 6 9999999977643 32 157999999997531 24677888
Q ss_pred CCCCCcEEEEEcCCCCC
Q 013515 370 SFPGVERVVYSTCSIHQ 386 (441)
Q Consensus 370 ~~~~~G~lvYsTCS~~~ 386 (441)
++++.|.++|+|||-..
T Consensus 146 ~~Lk~gGll~~t~t~~~ 162 (392)
T 3axs_A 146 LSMKRGGILSLTATDTA 162 (392)
T ss_dssp HHEEEEEEEEEEECCHH
T ss_pred HHhCCCCEEEEEecchh
Confidence 87775559999998755
|
| >1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=120.19 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHHHHHccCh-hhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccc-ccc----c
Q 013515 31 AYFARREAAKVLRLVLRGDA-RRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK----R 103 (441)
Q Consensus 31 ~~~~R~~A~~vL~~v~~~~~-~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~-~~~----~ 103 (441)
...+|+.|+++|++++.++. +.+ ++..... ...+.+|++|+++|||||+|++..||++|.+ ++++ ++. .
T Consensus 5 r~~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~--~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~--~l~~w~l~rl~~~ 80 (142)
T 1tzv_A 5 RRRMRLAVFKALFQHEFRRDEDLEQILEEILD--ETYDKKAKEDARRYIRGIKENLSMIDDLISR--YLEKWSLNRLSVV 80 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSCHHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCSSSCGGGSCHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCChHHCCHH
Confidence 44699999999999988665 544 3322211 2345679999999999999999999999997 5654 322 2
Q ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 104 QEELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 104 ~~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
++.+||+|+||++|++++|.+++|||+|+.+|.. -...|.|.++++
T Consensus 81 ~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVL~~ 129 (142)
T 1tzv_A 81 DRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDR 129 (142)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHCCCcchhhHHHHHHH
Confidence 4889999999999998899999999999998752 224566665554
|
| >3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=119.65 Aligned_cols=115 Identities=9% Similarity=0.003 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHccC-hhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccccc----chHH
Q 013515 32 YFARREAAKVLRLVLRGD-ARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~-~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~----~~~~ 106 (441)
..+|+.|+++|++++.++ .+++++..... ....+..|++|+++|||||+|++..||++|.+ ++++++. .++.
T Consensus 9 ~~aR~~A~~~L~~~~~~~~~~~~~~~~~~~-~~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~--~l~~~l~rl~~~~r~ 85 (141)
T 3d3b_A 9 RRARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGLMKP--YLSRLLEELGQVEKA 85 (141)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HSCCTTSCHHHHHHHHHHHHHTHHHHHHHHGG--GGTTCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HcCCCHHHcCHHHHH
Confidence 359999999999997643 44544432211 12345689999999999999999999999998 5664433 2488
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+||+|+||++|++++|.+++|||+|+.+|.. -...|.|-+++.
T Consensus 86 iLrla~yEll~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~ 131 (141)
T 3d3b_A 86 VLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 131 (141)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 9999999999998899999999999998752 124566665554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=126.58 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=116.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+++|++|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+ +++.++++|+.++..... ++||.
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~fD~ 96 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYID--CPVKA 96 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCC--SCEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhcc--CCceE
Confidence 457899999999999999999999876667999999999999999999999998 789999999988763322 68999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC--hhcHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ--VENEDVI 393 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~--~ENe~vV 393 (441)
|++|+|.-..+ +.... ...+ .+.+++..+.++++ ||.++.++++-++ .++...+
T Consensus 97 v~~~~~~~~~~------~~~~~----------~~~~-------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 153 (197)
T 3eey_A 97 VMFNLGYLPSG------DHSIS----------TRPE-------TTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKV 153 (197)
T ss_dssp EEEEESBCTTS------CTTCB----------CCHH-------HHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHH
T ss_pred EEEcCCcccCc------ccccc----------cCcc-------cHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHH
Confidence 99999751111 10000 0111 23457888888777 6888777654332 2334455
Q ss_pred HHHhchhcCCCeEEecCCCCCCC-ccccccccceeeeecccCC
Q 013515 394 KSVLPIAMSFGFQLATPFPNGTA-EASQFLKALSIYFEPIQWK 435 (441)
Q Consensus 394 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~p~~~~ 435 (441)
..+++.....+|++... .-+.. ..+...-..+..++|++|.
T Consensus 154 ~~~~~~l~~~~~~v~~~-~~~~~~~~pp~~~~~~~~~~~~~~~ 195 (197)
T 3eey_A 154 LEFLKGVDQKKFIVQRT-DFINQANCPPILVCIEKISEGHHHH 195 (197)
T ss_dssp HHHHTTSCTTTEEEEEE-EETTCCSCCCEEEEEEECCSSCCCC
T ss_pred HHHHHhCCCCcEEEEEE-EeccCccCCCeEEEEEEcccccccc
Confidence 66665545566776442 11111 1122222334667777664
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=137.57 Aligned_cols=144 Identities=8% Similarity=0.064 Sum_probs=109.3
Q ss_pred hhhhcCcccccchhhHHHHHHh-CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 216 PLIVNGCVFLQGKASSMVAAAL-APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 216 ~~~~~g~~~~Qd~ss~l~~~~l-~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
..|.+++...|+..+.++.... ...+|.+|||+| |+|..+..++.. ++.++|+++|+++.+++.+++|++++|+.+|
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v 223 (373)
T 2qm3_A 146 HEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDI 223 (373)
T ss_dssp GGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCE
T ss_pred hhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCE
Confidence 3466677777877766664432 334689999999 999999999876 3447999999999999999999999998889
Q ss_pred EEEeccCCC-CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 013515 295 EVLHGDFLN-LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373 (441)
Q Consensus 295 ~~~~~D~~~-~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~ 373 (441)
+++.+|+.+ ++... .++||+|++||||+..| ...+|..+.+.++
T Consensus 224 ~~~~~D~~~~l~~~~--~~~fD~Vi~~~p~~~~~---------------------------------~~~~l~~~~~~Lk 268 (373)
T 2qm3_A 224 EIFTFDLRKPLPDYA--LHKFDTFITDPPETLEA---------------------------------IRAFVGRGIATLK 268 (373)
T ss_dssp EEECCCTTSCCCTTT--SSCBSEEEECCCSSHHH---------------------------------HHHHHHHHHHTBC
T ss_pred EEEEChhhhhchhhc--cCCccEEEECCCCchHH---------------------------------HHHHHHHHHHHcc
Confidence 999999988 44321 15799999999974211 1578899998887
Q ss_pred -Cc-EEEEEcCCCCChhcH---HHHHHHhc
Q 013515 374 -VE-RVVYSTCSIHQVENE---DVIKSVLP 398 (441)
Q Consensus 374 -~G-~lvYsTCS~~~~ENe---~vV~~~l~ 398 (441)
|| .++|++|+ ..++. ..+.+++.
T Consensus 269 pgG~~~~~~~~~--~~~~~~~~~~~~~~l~ 296 (373)
T 2qm3_A 269 GPRCAGYFGITR--RESSLDKWREIQKLLL 296 (373)
T ss_dssp STTCEEEEEECT--TTCCHHHHHHHHHHHH
T ss_pred cCCeEEEEEEec--CcCCHHHHHHHHHHHH
Confidence 68 56898887 23444 55666663
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-14 Score=133.18 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=78.6
Q ss_pred ccccchh-hHHHHHH------hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 013515 223 VFLQGKA-SSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295 (441)
Q Consensus 223 ~~~Qd~s-s~l~~~~------l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~ 295 (441)
|..-|+- |.|++.+ +.++||++|||+|||+|..+.++|+.+++.|+|+|+|+++++++.++++++.. .|+.
T Consensus 52 ~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~ 129 (233)
T 4df3_A 52 YREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIF 129 (233)
T ss_dssp EEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEE
T ss_pred eeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCee
Confidence 4444432 4555554 44899999999999999999999999999999999999999999999988765 4899
Q ss_pred EEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 296 VLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 296 ~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
.+.+|...........+.+|+|++|.+.
T Consensus 130 ~V~~d~~~p~~~~~~~~~vDvVf~d~~~ 157 (233)
T 4df3_A 130 PILGDARFPEKYRHLVEGVDGLYADVAQ 157 (233)
T ss_dssp EEESCTTCGGGGTTTCCCEEEEEECCCC
T ss_pred EEEEeccCccccccccceEEEEEEeccC
Confidence 9999887654221123689999999884
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=145.49 Aligned_cols=123 Identities=21% Similarity=0.155 Sum_probs=96.5
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh---------------
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--------------- 289 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--------------- 289 (441)
.|+....+....+...+|.+|||+|||+|.+++.++..++ ..+|+++|+++.+++.+++|++.+
T Consensus 31 ~~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~ 109 (378)
T 2dul_A 31 RMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK 109 (378)
T ss_dssp GGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhccccccccccccccc
Confidence 4555555533333323689999999999999999999864 368999999999999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 013515 290 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 369 (441)
Q Consensus 290 g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~ 369 (441)
|+.+++++++|+..+.... ...||+|++||||+. ..+|+.|+
T Consensus 110 gl~~i~v~~~Da~~~~~~~--~~~fD~I~lDP~~~~------------------------------------~~~l~~a~ 151 (378)
T 2dul_A 110 GEKTIVINHDDANRLMAER--HRYFHFIDLDPFGSP------------------------------------MEFLDTAL 151 (378)
T ss_dssp SSSEEEEEESCHHHHHHHS--TTCEEEEEECCSSCC------------------------------------HHHHHHHH
T ss_pred CCCceEEEcCcHHHHHHhc--cCCCCEEEeCCCCCH------------------------------------HHHHHHHH
Confidence 8878999999997764322 157999999999752 25678888
Q ss_pred CCCCCcEEEEEcCCCCC
Q 013515 370 SFPGVERVVYSTCSIHQ 386 (441)
Q Consensus 370 ~~~~~G~lvYsTCS~~~ 386 (441)
+.++.|.++|.|||-..
T Consensus 152 ~~lk~gG~l~vt~td~~ 168 (378)
T 2dul_A 152 RSAKRRGILGVTATDGA 168 (378)
T ss_dssp HHEEEEEEEEEEECCHH
T ss_pred HhcCCCCEEEEEeecch
Confidence 87775558999998554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-13 Score=121.92 Aligned_cols=136 Identities=12% Similarity=0.101 Sum_probs=107.6
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
+|.+ .++.....+...+.+.++++|||+|||+|..+..++... +.++|+++|+++.+++.++++++.+|++++.++.+
T Consensus 20 ~g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 97 (204)
T 3e05_A 20 KKLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA 97 (204)
T ss_dssp TTTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred CCcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3666 555566677778889999999999999999999999884 45899999999999999999999999989999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
|+.+..... ..||.|+++.+.. + ...++..+.+.++ ||.++
T Consensus 98 d~~~~~~~~---~~~D~i~~~~~~~---------~--------------------------~~~~l~~~~~~LkpgG~l~ 139 (204)
T 3e05_A 98 FAPEGLDDL---PDPDRVFIGGSGG---------M--------------------------LEEIIDAVDRRLKSEGVIV 139 (204)
T ss_dssp CTTTTCTTS---CCCSEEEESCCTT---------C--------------------------HHHHHHHHHHHCCTTCEEE
T ss_pred ChhhhhhcC---CCCCEEEECCCCc---------C--------------------------HHHHHHHHHHhcCCCeEEE
Confidence 997655433 5799999988742 0 0367888888776 78888
Q ss_pred EEcCCCCChhcHHHHHHHhc
Q 013515 379 YSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 379 YsTCS~~~~ENe~vV~~~l~ 398 (441)
.++++. ++...+...++
T Consensus 140 ~~~~~~---~~~~~~~~~l~ 156 (204)
T 3e05_A 140 LNAVTL---DTLTKAVEFLE 156 (204)
T ss_dssp EEECBH---HHHHHHHHHHH
T ss_pred EEeccc---ccHHHHHHHHH
Confidence 876653 45555556664
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-13 Score=123.24 Aligned_cols=137 Identities=18% Similarity=0.255 Sum_probs=105.5
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~ 302 (441)
..+..-..++...+++.++++|||+|||+|..+..++.. .++|+++|+++.+++.++++++.+|++ ++.++.+|+.
T Consensus 38 ~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 114 (204)
T 3njr_A 38 ITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP 114 (204)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred CCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh
Confidence 334455566777888999999999999999999999987 479999999999999999999999997 8999999998
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+..... ..||.|++++.. . +. ++..+.+.++ ||.+++++
T Consensus 115 ~~~~~~---~~~D~v~~~~~~--------~----------------------------~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 115 AALADL---PLPEAVFIGGGG--------S----------------------------QA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp GGGTTS---CCCSEEEECSCC--------C----------------------------HH-HHHHHHHHSCTTCEEEEEE
T ss_pred hhcccC---CCCCEEEECCcc--------c----------------------------HH-HHHHHHHhcCCCcEEEEEe
Confidence 844332 569999987621 0 12 6777777666 79999988
Q ss_pred CCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 382 CSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
|+ .++...+.+.++. .++++..
T Consensus 155 ~~---~~~~~~~~~~l~~---~g~~i~~ 176 (204)
T 3njr_A 155 VT---LESETLLTQLHAR---HGGQLLR 176 (204)
T ss_dssp CS---HHHHHHHHHHHHH---HCSEEEE
T ss_pred cC---cccHHHHHHHHHh---CCCcEEE
Confidence 86 3566666666643 2355533
|
| >3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=118.53 Aligned_cols=116 Identities=11% Similarity=-0.003 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcC-CCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccc-ccc----c
Q 013515 31 AYFARREAAKVLRLVLRGDARRR-AVGSIKSLVYS-PSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK----R 103 (441)
Q Consensus 31 ~~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~-~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~-~~~----~ 103 (441)
..++|+.|+++|++++.++.+.+ ++...... .. .+.+|++|+++|||||+|++..||++|.+ ++++ ++. .
T Consensus 5 R~~aR~~A~q~L~~~~~~~~~~~~~l~~~~~~-~~~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~--~l~~w~~~rl~~~ 81 (149)
T 3r2d_A 5 RKGARDTAFLVLYRWDLRGENPGELFKEVVEE-KNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEK--HLKGWSIDRLGYV 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHHHHTHHHHHHHHHT--TC---CGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCccccCHH
Confidence 34699999999999987555444 33332211 12 45679999999999999999999999997 5543 332 2
Q ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 104 QEELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 104 ~~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
++.+||+++||++|++++|.+++||++|+.+|.. -...|.|-+++.
T Consensus 82 ~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~ 130 (149)
T 3r2d_A 82 ERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSA 130 (149)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeehHHHHHHHHHHhCCCCccccchHHhhH
Confidence 4889999999999998899999999999998752 124566655553
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=129.55 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=84.7
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEec
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHG 299 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~ 299 (441)
+...+....+..+...+++.+|.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+.+ +++.++
T Consensus 73 ~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~ 152 (255)
T 3mb5_A 73 GPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK 152 (255)
T ss_dssp CSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS
T ss_pred ccccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 3334445566677788899999999999999999999999987767899999999999999999999999876 999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCC
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|+.+..+. .+||.|++|+|+
T Consensus 153 d~~~~~~~----~~~D~v~~~~~~ 172 (255)
T 3mb5_A 153 DIYEGIEE----ENVDHVILDLPQ 172 (255)
T ss_dssp CGGGCCCC----CSEEEEEECSSC
T ss_pred chhhccCC----CCcCEEEECCCC
Confidence 99865322 579999999984
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=131.29 Aligned_cols=149 Identities=12% Similarity=0.199 Sum_probs=111.6
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 303 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~ 303 (441)
+++..+.++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+.+
T Consensus 47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 126 (248)
T 3tfw_A 47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ 126 (248)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 44666677777767778999999999999999999998765789999999999999999999999985 79999999876
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
..+.....++||.|++|+++.. ....+..+.++++ ||.|++..+
T Consensus 127 ~l~~~~~~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 127 SLESLGECPAFDLIFIDADKPN-----------------------------------NPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp HHHTCCSCCCCSEEEECSCGGG-----------------------------------HHHHHHHHHHTCCTTCEEEEECC
T ss_pred HHHhcCCCCCeEEEEECCchHH-----------------------------------HHHHHHHHHHhcCCCeEEEEeCC
Confidence 4332211248999999987321 0246777888887 789998877
Q ss_pred CCC--------ChhcHHHHHHHhchh-cCCCeEEe
Q 013515 383 SIH--------QVENEDVIKSVLPIA-MSFGFQLA 408 (441)
Q Consensus 383 S~~--------~~ENe~vV~~~l~~~-~~~~~~~~ 408 (441)
... ..++...+.+|++.. .++.|+..
T Consensus 172 ~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (248)
T 3tfw_A 172 VRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTAT 206 (248)
T ss_dssp SGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CcCCcccCccccchHHHHHHHHHHHHhhCCCEEEE
Confidence 655 333444556665432 35567653
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=122.61 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=97.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.+|++|||+|||+|..+..++.. .++|+|+|+++.+++.++++++..|++++++++.|+..+....+ ++||.|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~--~~fD~v~ 94 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVR--EPIRAAI 94 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCC--SCEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhcc--CCcCEEE
Confidence 468999999999999999999886 47999999999999999999999999899999988877542221 6799999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC---hhcHHHHH
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ---VENEDVIK 394 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~---~ENe~vV~ 394 (441)
++++.-..+ ...+......+...|..+.+.++ ||.++.+.++-++ +|.+. +.
T Consensus 95 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~ 150 (185)
T 3mti_A 95 FNLGYLPSA-----------------------DKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDA-VL 150 (185)
T ss_dssp EEEC----------------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHH-HH
T ss_pred EeCCCCCCc-----------------------chhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHH-HH
Confidence 986531110 11122233445677888888777 7877776665443 34443 44
Q ss_pred HHhchhcCCCeEEec
Q 013515 395 SVLPIAMSFGFQLAT 409 (441)
Q Consensus 395 ~~l~~~~~~~~~~~~ 409 (441)
.+++.....+|.+..
T Consensus 151 ~~~~~l~~~~~~~~~ 165 (185)
T 3mti_A 151 EYVIGLDQRVFTAML 165 (185)
T ss_dssp HHHHHSCTTTEEEEE
T ss_pred HHHHhCCCceEEEEE
Confidence 555444455576543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=132.16 Aligned_cols=125 Identities=19% Similarity=0.162 Sum_probs=96.5
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|..|.........+..+.+|++|||+|||+|..+..++...+ .++|+++|+++.+++.+++|++.+|++++.++++|+.
T Consensus 101 f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~ 179 (272)
T 3a27_A 101 MWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNR 179 (272)
T ss_dssp CCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGG
T ss_pred EECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChH
Confidence 344443333333344567899999999999999999998853 4799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 382 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTC 382 (441)
++ +.. .+||+|++|||. +. .+++..+++.+++|.++|.+|
T Consensus 180 ~~-~~~---~~~D~Vi~d~p~---~~---------------------------------~~~l~~~~~~LkpgG~l~~s~ 219 (272)
T 3a27_A 180 DV-ELK---DVADRVIMGYVH---KT---------------------------------HKFLDKTFEFLKDRGVIHYHE 219 (272)
T ss_dssp GC-CCT---TCEEEEEECCCS---SG---------------------------------GGGHHHHHHHEEEEEEEEEEE
T ss_pred Hc-Ccc---CCceEEEECCcc---cH---------------------------------HHHHHHHHHHcCCCCEEEEEE
Confidence 87 332 679999999995 11 134666777777666667778
Q ss_pred CCCChh
Q 013515 383 SIHQVE 388 (441)
Q Consensus 383 S~~~~E 388 (441)
.....+
T Consensus 220 ~~~~~~ 225 (272)
T 3a27_A 220 TVAEKI 225 (272)
T ss_dssp EEEGGG
T ss_pred cCcccc
Confidence 766554
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=133.05 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=78.5
Q ss_pred cccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEecc
Q 013515 222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 300 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D 300 (441)
+...+......++..+ ++|++|||+|||+|++++++|.. +..+|+|+|+++.+++.+++|++.+|+. +|+++++|
T Consensus 108 f~~~~~~er~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D 183 (278)
T 3k6r_A 108 FSPANVKERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD 183 (278)
T ss_dssp CCGGGHHHHHHHHHHC--CTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC
T ss_pred EcCCcHHHHHHHHHhc--CCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCc
Confidence 3333433444444444 67999999999999999999876 3469999999999999999999999995 59999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCSg 325 (441)
+.++... ..||+|++|+|+++
T Consensus 184 ~~~~~~~----~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 184 NRDFPGE----NIADRILMGYVVRT 204 (278)
T ss_dssp TTTCCCC----SCEEEEEECCCSSG
T ss_pred HHHhccc----cCCCEEEECCCCcH
Confidence 9987654 67999999999754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=121.11 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=97.9
Q ss_pred CCCCCCEEEEEcCC-CchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 238 APKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 238 ~~~~g~~VLDl~ag-~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+++|.+|||+||| +|..+..++... ..+|+++|+++.+++.++++++.+|+ +++++++|+..+..... ++||.
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~--~~fD~ 126 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVE--GTFDV 126 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCC--SCEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhccc--CceeE
Confidence 35689999999999 999999999875 47999999999999999999999998 89999999765443221 68999
Q ss_pred EEEcCCCCCCcccccc-cCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHH
Q 013515 317 ILLDPSCSGSGTAAER-LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIK 394 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~ 394 (441)
|++|||+...+..... |...+.. ... -......++..+.++++ ||.+++.+++ . .++...+.
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~----------~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~-~~~~~~~~ 190 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGG----------GKY----GEEFSVKLLEEAFDHLNPGGKVALYLPD-K-EKLLNVIK 190 (230)
T ss_dssp EEECCCCC---------------C----------CSS----SCHHHHHHHHHHGGGEEEEEEEEEEEES-C-HHHHHHHH
T ss_pred EEECCCCcCCccccccChhhhhcc----------Ccc----chHHHHHHHHHHHHHhCCCeEEEEEecc-c-HhHHHHHH
Confidence 9999998765532110 0000000 000 00122678999999887 6777775433 2 23334444
Q ss_pred HHhchhcCCCeEEec
Q 013515 395 SVLPIAMSFGFQLAT 409 (441)
Q Consensus 395 ~~l~~~~~~~~~~~~ 409 (441)
+.++ ..+|++..
T Consensus 191 ~~l~---~~g~~~~~ 202 (230)
T 3evz_A 191 ERGI---KLGYSVKD 202 (230)
T ss_dssp HHHH---HTTCEEEE
T ss_pred HHHH---HcCCceEE
Confidence 4443 34665543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-13 Score=127.71 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=107.4
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
.....++..+++.+|.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.+|+ +++.+..+|+.+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 178 (277)
T 1o54_A 99 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD 178 (277)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc
Confidence 3445667788899999999999999999999999876668999999999999999999999998 689999999987622
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. ++||+|++|+|+. ..+|..+.+.++ +|.+++.+++.
T Consensus 179 ~----~~~D~V~~~~~~~-------------------------------------~~~l~~~~~~L~pgG~l~~~~~~~- 216 (277)
T 1o54_A 179 E----KDVDALFLDVPDP-------------------------------------WNYIDKCWEALKGGGRFATVCPTT- 216 (277)
T ss_dssp C----CSEEEEEECCSCG-------------------------------------GGTHHHHHHHEEEEEEEEEEESSH-
T ss_pred C----CccCEEEECCcCH-------------------------------------HHHHHHHHHHcCCCCEEEEEeCCH-
Confidence 1 5799999999842 134666666666 68877776653
Q ss_pred ChhcHHHHHHHhchhcCCCeEEecCCCCCCCcc
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLATPFPNGTAEA 418 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~ 418 (441)
+.-..+.+.| ...+|..+.....+.+..
T Consensus 217 --~~~~~~~~~l---~~~gf~~~~~~~~~~~~~ 244 (277)
T 1o54_A 217 --NQVQETLKKL---QELPFIRIEVWESLFRPY 244 (277)
T ss_dssp --HHHHHHHHHH---HHSSEEEEEEECCCCCCE
T ss_pred --HHHHHHHHHH---HHCCCceeEEEEEeeeee
Confidence 1212222333 236787766555555543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=125.72 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=106.3
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLN 303 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~ 303 (441)
+.......+...+++.+|++|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.. |.+++.+..+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE 159 (258)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence 33334456777788899999999999999999999998766689999999999999999999998 87889999999988
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
.+... ++||.|++|+|.. ..+|.++.++++ +|.++.++.
T Consensus 160 ~~~~~---~~~D~v~~~~~~~-------------------------------------~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 160 AELEE---AAYDGVALDLMEP-------------------------------------WKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCCCT---TCEEEEEEESSCG-------------------------------------GGGHHHHHHHEEEEEEEEEEES
T ss_pred cCCCC---CCcCEEEECCcCH-------------------------------------HHHHHHHHHhCCCCCEEEEEeC
Confidence 74332 5799999998731 134666777666 677666554
Q ss_pred CCCChhcHHHHHHHhchhcCCCeEEecCCC
Q 013515 383 SIHQVENEDVIKSVLPIAMSFGFQLATPFP 412 (441)
Q Consensus 383 S~~~~ENe~vV~~~l~~~~~~~~~~~~~~~ 412 (441)
+. ..+.++++.....+|..+....
T Consensus 200 ~~------~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 200 NI------TQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp CH------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred CH------HHHHHHHHHHHHCCCceEEEEE
Confidence 32 2333433333456787655444
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-13 Score=135.29 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=70.9
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC----
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA---- 310 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~---- 310 (441)
..+++. |++|||+|||+|++++.+|.. ..+|+++|+++.+++.+++|++.+|++|++++++|+.++......
T Consensus 208 ~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~ 283 (369)
T 3bt7_A 208 DVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 283 (369)
T ss_dssp HHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCC
T ss_pred HHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccc
Confidence 344443 689999999999999988864 369999999999999999999999999999999998765321100
Q ss_pred ---------CCCccEEEEcCCCCC
Q 013515 311 ---------YSEVRAILLDPSCSG 325 (441)
Q Consensus 311 ---------~~~fD~Il~DpPCSg 325 (441)
..+||+|++|||+.|
T Consensus 284 ~~l~~~~~~~~~fD~Vv~dPPr~g 307 (369)
T 3bt7_A 284 NRLQGIDLKSYQCETIFVDPPRSG 307 (369)
T ss_dssp TTGGGSCGGGCCEEEEEECCCTTC
T ss_pred ccccccccccCCCCEEEECcCccc
Confidence 027999999999875
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-13 Score=123.26 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=108.5
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~ 301 (441)
..+++..+.++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.++++++..|+. +|+++++|+
T Consensus 40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 119 (221)
T 3u81_A 40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS 119 (221)
T ss_dssp GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence 5677778888888887778899999999999999999997765689999999999999999999999985 699999998
Q ss_pred CCCCCCCC---CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE
Q 013515 302 LNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV 377 (441)
Q Consensus 302 ~~~~~~~~---~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l 377 (441)
.+..+... ..++||.|++|+++... ....+++..+ ++++ ||.|
T Consensus 120 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~--------------------------------~~~~~~~~~~-~~LkpgG~l 166 (221)
T 3u81_A 120 QDLIPQLKKKYDVDTLDMVFLDHWKDRY--------------------------------LPDTLLLEKC-GLLRKGTVL 166 (221)
T ss_dssp HHHGGGTTTTSCCCCCSEEEECSCGGGH--------------------------------HHHHHHHHHT-TCCCTTCEE
T ss_pred HHHHHHHHHhcCCCceEEEEEcCCcccc--------------------------------hHHHHHHHhc-cccCCCeEE
Confidence 65432211 11579999999864210 0112455555 7776 7899
Q ss_pred EEEcCCCCChhcHHHHHHHhchhcCCCeEE
Q 013515 378 VYSTCSIHQVENEDVIKSVLPIAMSFGFQL 407 (441)
Q Consensus 378 vYsTCS~~~~ENe~vV~~~l~~~~~~~~~~ 407 (441)
|+..|.... .... .+++. .++.|+.
T Consensus 167 v~~~~~~~~--~~~~-~~~l~--~~~~~~~ 191 (221)
T 3u81_A 167 LADNVIVPG--TPDF-LAYVR--GSSSFEC 191 (221)
T ss_dssp EESCCCCCC--CHHH-HHHHH--HCTTEEE
T ss_pred EEeCCCCcc--hHHH-HHHHh--hCCCceE
Confidence 998888432 2333 34443 2456654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=134.03 Aligned_cols=91 Identities=27% Similarity=0.352 Sum_probs=76.4
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~ 311 (441)
+...+++.++++|||+|||+|..+..++.. ..+|+|+|+++.+++.+++|++.+|++|++++++|+.+.....+ ..
T Consensus 278 ~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~ 354 (433)
T 1uwv_A 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 (433)
T ss_dssp HHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred HHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhc
Confidence 334566778999999999999999999876 47999999999999999999999999999999999987443210 11
Q ss_pred CCccEEEEcCCCCCC
Q 013515 312 SEVRAILLDPSCSGS 326 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~ 326 (441)
++||.|++|||++|.
T Consensus 355 ~~fD~Vv~dPPr~g~ 369 (433)
T 1uwv_A 355 NGFDKVLLDPARAGA 369 (433)
T ss_dssp TCCSEEEECCCTTCC
T ss_pred CCCCEEEECCCCccH
Confidence 479999999998764
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=127.37 Aligned_cols=136 Identities=17% Similarity=0.225 Sum_probs=94.6
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH---hCCC-cEEEEeccCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAA-NIEVLHGDFLNL 304 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~---~g~~-~v~~~~~D~~~~ 304 (441)
.+.+++.++...++.+|||+|||+|..++.++.... ..+|+++|+++.+++.+++|++. +|+. ++.++++|+.++
T Consensus 24 D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR 102 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred HHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence 477888888888899999999999999999998853 47999999999999999999998 8875 699999999887
Q ss_pred CC-----CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 305 DP-----KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 305 ~~-----~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
.. ..+ .++||.|++|||+...+ -...++... .............++..+.++++ +|.++
T Consensus 103 ~~~~~~~~~~-~~~fD~Vv~nPPy~~~~-~~~~~~~~~-------------~~a~~~~~~~~~~~l~~~~~~LkpgG~l~ 167 (260)
T 2ozv_A 103 AKARVEAGLP-DEHFHHVIMNPPYNDAG-DRRTPDALK-------------AEAHAMTEGLFEDWIRTASAIMVSGGQLS 167 (260)
T ss_dssp HHHHHHTTCC-TTCEEEEEECCCC-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhhhhccC-CCCcCEEEECCCCcCCC-CCCCcCHHH-------------HHHhhcCcCCHHHHHHHHHHHcCCCCEEE
Confidence 21 010 26799999999997664 112222100 00000111124578888888887 67766
Q ss_pred EE
Q 013515 379 YS 380 (441)
Q Consensus 379 Ys 380 (441)
..
T Consensus 168 ~~ 169 (260)
T 2ozv_A 168 LI 169 (260)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=112.89 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHHHHHHccC-hhhHHHHhhhhhh--cCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccc-ccc----
Q 013515 31 AYFARREAAKVLRLVLRGD-ARRRAVGSIKSLV--YSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK---- 102 (441)
Q Consensus 31 ~~~~R~~A~~vL~~v~~~~-~~~~~~~~~~~~~--~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~-~~~---- 102 (441)
...+|+.|+++|++++.++ ...+++....... ......+++|+++|||||+|++..||++|.+ ++++ +++
T Consensus 10 R~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~l~~~d~~~~~~~~~~~~lv~gvl~~~~~lD~~i~~--~l~~w~l~rl~~ 87 (156)
T 1eyv_A 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITA--HLRGWTLDRLPA 87 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHT--TSTTCCGGGSCH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCChhhCCH
Confidence 3459999999999997754 3333332221110 1112356899999999999999999999997 5543 322
Q ss_pred chHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHHH---HHHHHHHHHHcccc
Q 013515 103 RQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAI---QLALAQLLVRNKVK 152 (441)
Q Consensus 103 ~~~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~~~~~ 152 (441)
.++.+||+++||++|++++|.+++|||+|+.+|... ...|.|-++++...
T Consensus 88 ~~r~iLrla~yel~~~~~iP~~v~InEaVelak~~~~~~~~~fVNgVLr~i~r 140 (156)
T 1eyv_A 88 VDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVML 140 (156)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhCCCccccchHHHHHHHHH
Confidence 248899999999999988999999999999987531 24577776665443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=124.50 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=79.4
Q ss_pred ccccchhhHHHHHHh---CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe
Q 013515 223 VFLQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH 298 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l---~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~ 298 (441)
++.+.....++..++ ...++.+|||+|||+|..+..++.. +..+|+|+|+++.+++.+++|++.+|+.+ +++++
T Consensus 102 lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~ 179 (284)
T 1nv8_A 102 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK 179 (284)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred eecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 334444444443333 2346789999999999999999988 45899999999999999999999999975 99999
Q ss_pred ccCCCCCCCCCCCCCc---cEEEEcCCCCCCcc
Q 013515 299 GDFLNLDPKDPAYSEV---RAILLDPSCSGSGT 328 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~f---D~Il~DpPCSg~G~ 328 (441)
+|+.+... ++| |.|++||||.+.+.
T Consensus 180 ~D~~~~~~-----~~f~~~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 180 GEFLEPFK-----EKFASIEMILSNPPYVKSSA 207 (284)
T ss_dssp SSTTGGGG-----GGTTTCCEEEECCCCBCGGG
T ss_pred Ccchhhcc-----cccCCCCEEEEcCCCCCccc
Confidence 99987432 357 99999999998876
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-12 Score=115.98 Aligned_cols=124 Identities=22% Similarity=0.313 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++.+|+ ++.++++|+.+++ .+||.|
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~D~v 116 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------SRVDIV 116 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------CCCSEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC------CCCCEE
Confidence 4667999999999999999999876 335899999999999999999999988 8999999998864 469999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHHh
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
++|||+.... +.. ...+|..+.+.+ | .+|++|. .+.++.+.+.+++
T Consensus 117 ~~~~p~~~~~---~~~---------------------------~~~~l~~~~~~l--~-~~~~~~~-~~~~~~~~~~~~l 162 (207)
T 1wy7_A 117 IMNPPFGSQR---KHA---------------------------DRPFLLKAFEIS--D-VVYSIHL-AKPEVRRFIEKFS 162 (207)
T ss_dssp EECCCCSSSS---TTT---------------------------THHHHHHHHHHC--S-EEEEEEE-CCHHHHHHHHHHH
T ss_pred EEcCCCcccc---CCc---------------------------hHHHHHHHHHhc--C-cEEEEEe-CCcCCHHHHHHHH
Confidence 9999974321 100 124566666655 3 3778883 4567777777777
Q ss_pred chhcCCCeEE
Q 013515 398 PIAMSFGFQL 407 (441)
Q Consensus 398 ~~~~~~~~~~ 407 (441)
+ ..+|++
T Consensus 163 ~---~~g~~~ 169 (207)
T 1wy7_A 163 W---EHGFVV 169 (207)
T ss_dssp H---HTTEEE
T ss_pred H---HCCCeE
Confidence 4 245554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-13 Score=123.48 Aligned_cols=148 Identities=13% Similarity=0.143 Sum_probs=107.8
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 303 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~ 303 (441)
+++..+.++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+. +++++++|+.+
T Consensus 42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (223)
T 3duw_A 42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121 (223)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 45666777777767778999999999999999999998765689999999999999999999999985 49999999876
Q ss_pred CCCCC--CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 304 LDPKD--PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 304 ~~~~~--~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
..+.. ...++||.|++|++++. ...++..+.++++ ||.++..
T Consensus 122 ~~~~~~~~~~~~fD~v~~d~~~~~-----------------------------------~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 122 SLQQIENEKYEPFDFIFIDADKQN-----------------------------------NPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp HHHHHHHTTCCCCSEEEECSCGGG-----------------------------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHhcCCCCcCEEEEcCCcHH-----------------------------------HHHHHHHHHHhcCCCcEEEEe
Confidence 43211 00146999999988431 1356778888887 7888776
Q ss_pred cCCCC--------ChhcHHHHHHHhchh-cCCCeEE
Q 013515 381 TCSIH--------QVENEDVIKSVLPIA-MSFGFQL 407 (441)
Q Consensus 381 TCS~~--------~~ENe~vV~~~l~~~-~~~~~~~ 407 (441)
.+... ..++...+.+|++.. .+..|+.
T Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 202 (223)
T 3duw_A 167 NVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSA 202 (223)
T ss_dssp SCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEE
T ss_pred CCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEE
Confidence 55543 233344555665432 2444543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.5e-13 Score=120.56 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCCCC-ccEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAYSE-VRAI 317 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~~-fD~I 317 (441)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++.+|+ ++++++++|+.++..... .++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ-NQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-SSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-cCCCCCEE
Confidence 6889999999999999987765 236999999999999999999999998 789999999987654311 157 9999
Q ss_pred EEcCCC
Q 013515 318 LLDPSC 323 (441)
Q Consensus 318 l~DpPC 323 (441)
++|||+
T Consensus 130 ~~~~~~ 135 (201)
T 2ift_A 130 FLDPPF 135 (201)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999994
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=130.26 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=111.1
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEec
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHG 299 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~ 299 (441)
+.+.++.....++..++...++.+|||+|||+|..|..++..+++.++|+++|+++.+++.+++++++.|+. +|+++.+
T Consensus 40 ~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g 119 (242)
T 3r3h_A 40 ANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119 (242)
T ss_dssp GGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEES
T ss_pred CCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 345677778888888877778899999999999999999998866789999999999999999999999984 8999999
Q ss_pred cCCCCCCCCC---CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-Cc
Q 013515 300 DFLNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VE 375 (441)
Q Consensus 300 D~~~~~~~~~---~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G 375 (441)
|+.+..+... ..++||.|++|++... ....++.+.++++ ||
T Consensus 120 da~~~l~~~~~~~~~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG 164 (242)
T 3r3h_A 120 PALDTLHSLLNEGGEHQFDFIFIDADKTN-----------------------------------YLNYYELALKLVTPKG 164 (242)
T ss_dssp CHHHHHHHHHHHHCSSCEEEEEEESCGGG-----------------------------------HHHHHHHHHHHEEEEE
T ss_pred CHHHHHHHHhhccCCCCEeEEEEcCChHH-----------------------------------hHHHHHHHHHhcCCCe
Confidence 9976543210 0167999999987210 0245777778777 78
Q ss_pred EEEEEcCCC-----CChhc---HHHHHHHhchh-cCCCeEE
Q 013515 376 RVVYSTCSI-----HQVEN---EDVIKSVLPIA-MSFGFQL 407 (441)
Q Consensus 376 ~lvYsTCS~-----~~~EN---e~vV~~~l~~~-~~~~~~~ 407 (441)
.||+..+.. .+..+ ...+.+|.+.. .++.|+.
T Consensus 165 ~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (242)
T 3r3h_A 165 LIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFV 205 (242)
T ss_dssp EEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEE
Confidence 887654432 23332 33455555432 3455654
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.4e-13 Score=124.19 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=106.3
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEE
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVL 297 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~ 297 (441)
..|..++|...+.++..++.+.++.+|||+|||+|..+..++..++ .++|+++|+++.+++.++++++..|+. +|.++
T Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 110 (233)
T 2gpy_A 32 EQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELL 110 (233)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 4577788988899999888888899999999999999999999864 589999999999999999999999984 69999
Q ss_pred eccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcE
Q 013515 298 HGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VER 376 (441)
Q Consensus 298 ~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~ 376 (441)
.+|+....+.....+.||+|++|+||+. +..++..+.++++ ||.
T Consensus 111 ~~d~~~~~~~~~~~~~fD~I~~~~~~~~-----------------------------------~~~~l~~~~~~L~pgG~ 155 (233)
T 2gpy_A 111 FGDALQLGEKLELYPLFDVLFIDAAKGQ-----------------------------------YRRFFDMYSPMVRPGGL 155 (233)
T ss_dssp CSCGGGSHHHHTTSCCEEEEEEEGGGSC-----------------------------------HHHHHHHHGGGEEEEEE
T ss_pred ECCHHHHHHhcccCCCccEEEECCCHHH-----------------------------------HHHHHHHHHHHcCCCeE
Confidence 9999875321100157999999998631 1367888888887 789
Q ss_pred EEEEcCCC
Q 013515 377 VVYSTCSI 384 (441)
Q Consensus 377 lvYsTCS~ 384 (441)
++++++..
T Consensus 156 lv~~~~~~ 163 (233)
T 2gpy_A 156 ILSDNVLF 163 (233)
T ss_dssp EEEETTTC
T ss_pred EEEEcCCc
Confidence 99986544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=122.93 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=82.2
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-C--CCcEEEEecc
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-G--AANIEVLHGD 300 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g--~~~v~~~~~D 300 (441)
.++......+...+++.+|++|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.. | .+++.++++|
T Consensus 82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d 161 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 161 (280)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 344445567777888999999999999999999999998766789999999999999999999998 7 6789999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpP 322 (441)
+.+.+... ++||.|++|+|
T Consensus 162 ~~~~~~~~---~~~D~v~~~~~ 180 (280)
T 1i9g_A 162 LADSELPD---GSVDRAVLDML 180 (280)
T ss_dssp GGGCCCCT---TCEEEEEEESS
T ss_pred hHhcCCCC---CceeEEEECCc
Confidence 98875332 67999999877
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=118.19 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=99.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------C--C
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------P--A 310 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~--~ 310 (441)
+++|.+|||+|||||++|..+++. .++|+|+|+++. ....+++++++|+.+..... . .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~-----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEM-----------EEIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCC-----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEecccc-----------ccCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 578999999999999999999887 589999999974 13467899999998754110 0 0
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhc
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~EN 389 (441)
.++||+|++|+++..+|.. ..+......++..+|..|.++|+ ||.+| |.++..++
T Consensus 89 ~~~~D~Vlsd~~~~~~g~~---------------------~~d~~~~~~l~~~~l~~a~~~LkpGG~lv---~k~~~~~~ 144 (191)
T 3dou_A 89 IEKVDDVVSDAMAKVSGIP---------------------SRDHAVSYQIGQRVMEIAVRYLRNGGNVL---LKQFQGDM 144 (191)
T ss_dssp CSSEEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEEEEEEE---EEEECSTH
T ss_pred CCcceEEecCCCcCCCCCc---------------------ccCHHHHHHHHHHHHHHHHHHccCCCEEE---EEEcCCCC
Confidence 0379999999998877742 12233455678889999999887 68877 34455566
Q ss_pred HHHHHHHhchhcCCCeEEecC-CCCCCCccccccccceeee
Q 013515 390 EDVIKSVLPIAMSFGFQLATP-FPNGTAEASQFLKALSIYF 429 (441)
Q Consensus 390 e~vV~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f 429 (441)
...+.+.++. .|..+.. .|...+..+.-..-++..|
T Consensus 145 ~~~~~~~l~~----~F~~v~~~kP~asR~~s~E~y~v~~~~ 181 (191)
T 3dou_A 145 TNDFIAIWRK----NFSSYKISKPPASRGSSSEIYIMFFGF 181 (191)
T ss_dssp HHHHHHHHGG----GEEEEEEECC------CCEEEEEEEEE
T ss_pred HHHHHHHHHH----hcCEEEEECCCCccCCCceEEEEEeee
Confidence 6666666642 3654443 4666666655433444444
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=130.20 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=105.7
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
+..+..++ ..+|.+|||+|||+|+.+..++... ..++|+|+|+++.+++.+++|++..|+ ++|++.++|+.+++..+
T Consensus 207 a~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~ 284 (373)
T 3tm4_A 207 ANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV 284 (373)
T ss_dssp HHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred HHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence 33444455 7889999999999999999998864 335899999999999999999999998 68999999999987543
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVE 388 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~E 388 (441)
++||.|++|||..- + ......+..++.+++..+.+.+ +|.++|.||+
T Consensus 285 ---~~fD~Ii~npPyg~------r------------------~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~----- 331 (373)
T 3tm4_A 285 ---DSVDFAISNLPYGL------K------------------IGKKSMIPDLYMKFFNELAKVL-EKRGVFITTE----- 331 (373)
T ss_dssp ---SCEEEEEEECCCC------------------------------CCHHHHHHHHHHHHHHHE-EEEEEEEESC-----
T ss_pred ---CCcCEEEECCCCCc------c------------------cCcchhHHHHHHHHHHHHHHHc-CCeEEEEECC-----
Confidence 67999999999631 0 0011124455778888887766 7888898884
Q ss_pred cHHHHHHHhchhcCCCeEEec
Q 013515 389 NEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~~~~~~ 409 (441)
...+.+.+. ..+|+...
T Consensus 332 -~~~~~~~~~---~~G~~~~~ 348 (373)
T 3tm4_A 332 -KKAIEEAIA---ENGFEIIH 348 (373)
T ss_dssp -HHHHHHHHH---HTTEEEEE
T ss_pred -HHHHHHHHH---HcCCEEEE
Confidence 444555553 34677654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=126.74 Aligned_cols=100 Identities=20% Similarity=0.206 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+|++|||+|||+|+.++. +. +..+|+++|+++.+++.+++|++.+|+ ++++++++|+.++. .+||.|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEEE
Confidence 5799999999999999998 76 357999999999999999999999998 58999999998765 5699999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
+|||.++. .++..+.++++ +|.++|++|+..
T Consensus 264 ~dpP~~~~------------------------------------~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 264 MNLPKFAH------------------------------------KFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp ECCTTTGG------------------------------------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred ECCcHhHH------------------------------------HHHHHHHHHcCCCCEEEEEEeecC
Confidence 99996532 34666677665 789999999987
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=120.89 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=95.2
Q ss_pred cccchhhHHHHHHh---CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEe
Q 013515 224 FLQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLH 298 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l---~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~--~v~~~~ 298 (441)
.++.....++..++ .++++.+|||+|||+|..|..++..+++.++|+++|+++.+++.+++++++.|+. +|++++
T Consensus 36 ~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~ 115 (221)
T 3dr5_A 36 APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL 115 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence 34444444444443 3445569999999999999999998876789999999999999999999999986 799999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV 377 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l 377 (441)
+|+.+..+... .++||.|++|++... ....++.+.++++ ||.|
T Consensus 116 gda~~~l~~~~-~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG~l 159 (221)
T 3dr5_A 116 SRPLDVMSRLA-NDSYQLVFGQVSPMD-----------------------------------LKALVDAAWPLLRRGGAL 159 (221)
T ss_dssp SCHHHHGGGSC-TTCEEEEEECCCTTT-----------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred cCHHHHHHHhc-CCCcCeEEEcCcHHH-----------------------------------HHHHHHHHHHHcCCCcEE
Confidence 99877643321 168999999976310 0245777778777 7888
Q ss_pred EEEcCCC
Q 013515 378 VYSTCSI 384 (441)
Q Consensus 378 vYsTCS~ 384 (441)
+...+..
T Consensus 160 v~dn~~~ 166 (221)
T 3dr5_A 160 VLADALL 166 (221)
T ss_dssp EETTTTG
T ss_pred EEeCCCC
Confidence 8877665
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=114.86 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+|.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++.+|+++++++++|+.++....+ .++||.|++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~fD~i~~ 119 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT-TSPVDLVLA 119 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC-SSCCSEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc-CCCccEEEE
Confidence 57899999999999999988764 456899999999999999999999999899999999987653211 168999999
Q ss_pred cCCCC
Q 013515 320 DPSCS 324 (441)
Q Consensus 320 DpPCS 324 (441)
|||..
T Consensus 120 ~~p~~ 124 (189)
T 3p9n_A 120 DPPYN 124 (189)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 99953
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-13 Score=123.07 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=90.1
Q ss_pred CcccccchhhHHHHHHh---CC-CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 013515 221 GCVFLQGKASSMVAAAL---AP-KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l---~~-~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~ 296 (441)
|.++.+..+..++..++ .. .++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..|. ++++
T Consensus 6 ~~~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~ 83 (215)
T 4dzr_A 6 DCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA-VVDW 83 (215)
T ss_dssp GGGSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------C
T ss_pred CccCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC-ceEE
Confidence 34444444444444333 33 678999999999999999999985 347999999999999999999999888 8899
Q ss_pred EeccCCCCCCC-CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C
Q 013515 297 LHGDFLNLDPK-DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V 374 (441)
Q Consensus 297 ~~~D~~~~~~~-~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~ 374 (441)
+++|+.+.... ....++||.|++|||+...+.+..-++.. ..+... .....-..-......++..+.++++ |
T Consensus 84 ~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 84 AAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSV-RDYEPR-----LALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp CHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred EEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhh-hccCcc-----ccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 99998773221 00016799999999997766543211100 000000 0000000011223678888888887 7
Q ss_pred cEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCC
Q 013515 375 ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNG 414 (441)
Q Consensus 375 G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~ 414 (441)
|.+++.++. ..+...+..++... ..+|..+...+..
T Consensus 158 G~l~~~~~~---~~~~~~~~~~l~~~-~~gf~~~~~~~~~ 193 (215)
T 4dzr_A 158 RAGVFLEVG---HNQADEVARLFAPW-RERGFRVRKVKDL 193 (215)
T ss_dssp SEEEEEECT---TSCHHHHHHHTGGG-GGGTEECCEEECT
T ss_pred CeEEEEEEC---CccHHHHHHHHHHh-hcCCceEEEEEec
Confidence 884555554 33445556666410 2356554444433
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=122.03 Aligned_cols=128 Identities=14% Similarity=0.074 Sum_probs=100.2
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~ 301 (441)
..++.....++..++...++.+|||+|||+|+.+..++..+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+
T Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda 131 (237)
T 3c3y_A 52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA 131 (237)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 4455666677777666677889999999999999999998875689999999999999999999999985 699999998
Q ss_pred CCCCCCC--C--CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcE
Q 013515 302 LNLDPKD--P--AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VER 376 (441)
Q Consensus 302 ~~~~~~~--~--~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~ 376 (441)
.+..+.. . ..++||.|++|+++.. +..+++.+.++++ ||.
T Consensus 132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~-----------------------------------~~~~l~~~~~~L~pGG~ 176 (237)
T 3c3y_A 132 MLALDNLLQGQESEGSYDFGFVDADKPN-----------------------------------YIKYHERLMKLVKVGGI 176 (237)
T ss_dssp HHHHHHHHHSTTCTTCEEEEEECSCGGG-----------------------------------HHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHhccCCCCCcCEEEECCchHH-----------------------------------HHHHHHHHHHhcCCCeE
Confidence 7643211 0 0167999999977421 1356777777777 789
Q ss_pred EEEEcCCCC
Q 013515 377 VVYSTCSIH 385 (441)
Q Consensus 377 lvYsTCS~~ 385 (441)
|++.+|...
T Consensus 177 lv~d~~~~~ 185 (237)
T 3c3y_A 177 VAYDNTLWG 185 (237)
T ss_dssp EEEECTTGG
T ss_pred EEEecCCcC
Confidence 999887543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=108.08 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=93.6
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
...++.-...+...+.+.++.+|||+|||+|..+..++. +..+|+++|+++.+++.++++++.+|++++.++++|+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 93 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAE 93 (183)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcc
Confidence 344444556666777888899999999999999999987 45799999999999999999999999988999999987
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 382 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTC 382 (441)
+.. .. ++||.|+++++ . . . ..++..+.++ ++|.+++++|
T Consensus 94 ~~~-~~---~~~D~i~~~~~----~----~------------------~----------~~~l~~~~~~-~gG~l~~~~~ 132 (183)
T 2yxd_A 94 DVL-DK---LEFNKAFIGGT----K----N------------------I----------EKIIEILDKK-KINHIVANTI 132 (183)
T ss_dssp HHG-GG---CCCSEEEECSC----S----C------------------H----------HHHHHHHHHT-TCCEEEEEES
T ss_pred ccc-cC---CCCcEEEECCc----c----c------------------H----------HHHHHHHhhC-CCCEEEEEec
Confidence 722 21 57999999988 1 0 0 2556666666 8899999887
Q ss_pred C
Q 013515 383 S 383 (441)
Q Consensus 383 S 383 (441)
+
T Consensus 133 ~ 133 (183)
T 2yxd_A 133 V 133 (183)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-12 Score=115.91 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++...+ ...|+|+|+++.+++.++++++..|++|+.++++|+.+++...+ .++||.|++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~D~i~~ 117 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE-DGEIDRLYL 117 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC-TTCCSEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC-CCCCCEEEE
Confidence 4688999999999999999998853 57999999999999999999999999999999999988652111 157999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
++|..-.. .+ |. +.+ ..+..+|..+.+.++ ||.++.+|
T Consensus 118 ~~~~~~~~--~~--------~~---------~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 118 NFSDPWPK--KR--------HE---------KRR-----LTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp ESCCCCCS--GG--------GG---------GGS-----TTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ECCCCccc--cc--------hh---------hhc-----cCCHHHHHHHHHHcCCCcEEEEEe
Confidence 98732110 00 00 000 124577888888777 67777654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=114.51 Aligned_cols=82 Identities=24% Similarity=0.204 Sum_probs=65.2
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.+++|++|||+|||+|..+.+++...+ .++|+|+|+++.+++.+.+..+.. .|+.++.+|+.......+..++||.
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeE
Confidence 3467899999999999999999999876 689999999999998887777654 4788999998774210011167999
Q ss_pred EEEcC
Q 013515 317 ILLDP 321 (441)
Q Consensus 317 Il~Dp 321 (441)
|++|.
T Consensus 130 V~~~~ 134 (210)
T 1nt2_A 130 IYQDI 134 (210)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99983
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=126.02 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=70.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.++++|||+|||+|..+..++.. ..+|+++|+++.+++.+++|++.+|++ ++++++|+.++.. .+||.|+
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~-----~~fD~Vv 358 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV-----KGFDTVI 358 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-----TTCSEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-----cCCCEEE
Confidence 567899999999999999999875 369999999999999999999999998 9999999988753 2699999
Q ss_pred EcCCCCCC
Q 013515 319 LDPSCSGS 326 (441)
Q Consensus 319 ~DpPCSg~ 326 (441)
+|||++|.
T Consensus 359 ~dPPr~g~ 366 (425)
T 2jjq_A 359 VDPPRAGL 366 (425)
T ss_dssp ECCCTTCS
T ss_pred EcCCccch
Confidence 99997653
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=118.62 Aligned_cols=124 Identities=12% Similarity=0.140 Sum_probs=99.3
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEe
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLH 298 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~ 298 (441)
.+...+|.....++..++...++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++..|+. +|+++.
T Consensus 50 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (232)
T 3ntv_A 50 NEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIE 128 (232)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred cCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 34455677777777777777789999999999999999999853 4689999999999999999999999985 899999
Q ss_pred ccCCCCCC-CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcE
Q 013515 299 GDFLNLDP-KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VER 376 (441)
Q Consensus 299 ~D~~~~~~-~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~ 376 (441)
+|+.+..+ .. .++||.|++|+++.. +..++..+.++++ ||.
T Consensus 129 ~d~~~~~~~~~--~~~fD~V~~~~~~~~-----------------------------------~~~~l~~~~~~LkpgG~ 171 (232)
T 3ntv_A 129 GNALEQFENVN--DKVYDMIFIDAAKAQ-----------------------------------SKKFFEIYTPLLKHQGL 171 (232)
T ss_dssp SCGGGCHHHHT--TSCEEEEEEETTSSS-----------------------------------HHHHHHHHGGGEEEEEE
T ss_pred CCHHHHHHhhc--cCCccEEEEcCcHHH-----------------------------------HHHHHHHHHHhcCCCeE
Confidence 99987543 22 168999999977421 1357888888887 677
Q ss_pred EEEEc
Q 013515 377 VVYST 381 (441)
Q Consensus 377 lvYsT 381 (441)
|++..
T Consensus 172 lv~d~ 176 (232)
T 3ntv_A 172 VITDN 176 (232)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 77743
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=110.90 Aligned_cols=141 Identities=20% Similarity=0.203 Sum_probs=106.6
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..+...+.+.++.+|||+|||+|..+..++...++..+|+++|+++.+++.+++++...|+.++.++.+|+.+++...
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-- 104 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD-- 104 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS--
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC--
Confidence 455566788889999999999999999999987566799999999999999999999999989999999998876443
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh--
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV-- 387 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~-- 387 (441)
++||+|++... +..-+| ...+|..+.++++ ||.++.++++....
T Consensus 105 -~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 151 (219)
T 3dh0_A 105 -NTVDFIFMAFT------FHELSE--------------------------PLKFLEELKRVAKPFAYLAIIDWKKEERDK 151 (219)
T ss_dssp -SCEEEEEEESC------GGGCSS--------------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSS
T ss_pred -CCeeEEEeehh------hhhcCC--------------------------HHHHHHHHHHHhCCCeEEEEEEeccccccc
Confidence 67999997532 211000 1467888888777 78888877554332
Q ss_pred -------hcHHHHHHHhchhcCCCeEEec
Q 013515 388 -------ENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 388 -------ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
-+.+.+...++ ..+|+++.
T Consensus 152 ~~~~~~~~~~~~~~~~l~---~~Gf~~~~ 177 (219)
T 3dh0_A 152 GPPPEEVYSEWEVGLILE---DAGIRVGR 177 (219)
T ss_dssp SCCGGGSCCHHHHHHHHH---HTTCEEEE
T ss_pred CCchhcccCHHHHHHHHH---HCCCEEEE
Confidence 23456666664 35777654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-12 Score=117.45 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++.+|+++++++++|+.+..+.. .++||+|++|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~--~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK--GTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--CCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc--CCCCCEEEEC
Confidence 6889999999999999987765 23599999999999999999999999989999999987743222 2579999999
Q ss_pred CCC
Q 013515 321 PSC 323 (441)
Q Consensus 321 pPC 323 (441)
||+
T Consensus 130 ~p~ 132 (202)
T 2fpo_A 130 PPF 132 (202)
T ss_dssp CSS
T ss_pred CCC
Confidence 994
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=115.12 Aligned_cols=131 Identities=10% Similarity=0.026 Sum_probs=96.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+|+.+|+++++|+.+++......++||.|
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence 44578999999999999999999764 45799999999999999999999999988999999998876321001679999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
+++.- . + ...++..+.++++ ||.+++..+....+|-+.... .
T Consensus 146 ~~~~~-------~---~--------------------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~-~ 188 (240)
T 1xdz_A 146 TARAV-------A---R--------------------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKK-A 188 (240)
T ss_dssp EEECC-------S---C--------------------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHH-H
T ss_pred EEecc-------C---C--------------------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHH-H
Confidence 98552 0 0 1467888888887 788888777765554443333 3
Q ss_pred hchhcCCCeEEec
Q 013515 397 LPIAMSFGFQLAT 409 (441)
Q Consensus 397 l~~~~~~~~~~~~ 409 (441)
+ ...+|++..
T Consensus 189 l---~~~g~~~~~ 198 (240)
T 1xdz_A 189 I---TTLGGELEN 198 (240)
T ss_dssp H---HHTTEEEEE
T ss_pred H---HHcCCeEeE
Confidence 3 234666543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-12 Score=117.82 Aligned_cols=126 Identities=10% Similarity=0.117 Sum_probs=97.4
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEec
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHG 299 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~ 299 (441)
|...++.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+. +++++++
T Consensus 36 ~~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 115 (210)
T 3c3p_A 36 NIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG 115 (210)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES
T ss_pred CCCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 333455556666666555556889999999999999999988764689999999999999999999999884 5999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
|+.+..+... + ||.|++|+++.. +..+++.+.++++ ||.++
T Consensus 116 d~~~~~~~~~--~-fD~v~~~~~~~~-----------------------------------~~~~l~~~~~~LkpgG~lv 157 (210)
T 3c3p_A 116 DPLGIAAGQR--D-IDILFMDCDVFN-----------------------------------GADVLERMNRCLAKNALLI 157 (210)
T ss_dssp CHHHHHTTCC--S-EEEEEEETTTSC-----------------------------------HHHHHHHHGGGEEEEEEEE
T ss_pred cHHHHhccCC--C-CCEEEEcCChhh-----------------------------------hHHHHHHHHHhcCCCeEEE
Confidence 9976533222 5 999999965310 1366888888887 78888
Q ss_pred EEcCCC
Q 013515 379 YSTCSI 384 (441)
Q Consensus 379 YsTCS~ 384 (441)
+..+..
T Consensus 158 ~~~~~~ 163 (210)
T 3c3p_A 158 AVNALR 163 (210)
T ss_dssp EESSSS
T ss_pred EECccc
Confidence 876654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-12 Score=119.51 Aligned_cols=102 Identities=21% Similarity=0.325 Sum_probs=84.0
Q ss_pred Ccccccch--hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEE
Q 013515 221 GCVFLQGK--ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVL 297 (441)
Q Consensus 221 g~~~~Qd~--ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~ 297 (441)
+++..+.. ...++..+....++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++.+|+ +++.++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~ 132 (241)
T 3gdh_A 56 GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFI 132 (241)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred ceeecCHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEE
Confidence 44444444 4455555555558999999999999999999986 27999999999999999999999998 689999
Q ss_pred eccCCCCCCCCCCCCCccEEEEcCCCCCCccc
Q 013515 298 HGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 298 ~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
++|+.+++.. ++||+|++||||.+.+..
T Consensus 133 ~~d~~~~~~~----~~~D~v~~~~~~~~~~~~ 160 (241)
T 3gdh_A 133 CGDFLLLASF----LKADVVFLSPPWGGPDYA 160 (241)
T ss_dssp ESCHHHHGGG----CCCSEEEECCCCSSGGGG
T ss_pred ECChHHhccc----CCCCEEEECCCcCCcchh
Confidence 9999887632 689999999999987654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=111.91 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=84.4
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
.|.+..+......+...+.+.++.+|||+|||+|..+..++.. .++|+++|+++.+++.++++++.+|+.++++..+
T Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 132 (210)
T 3lbf_A 56 QGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHG 132 (210)
T ss_dssp TSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEEC
Confidence 3555666666777788888999999999999999999999987 3799999999999999999999999989999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCC
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|+....... ++||.|+++.++
T Consensus 133 d~~~~~~~~---~~~D~i~~~~~~ 153 (210)
T 3lbf_A 133 DGWQGWQAR---APFDAIIVTAAP 153 (210)
T ss_dssp CGGGCCGGG---CCEEEEEESSBC
T ss_pred CcccCCccC---CCccEEEEccch
Confidence 998765432 689999998654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=108.21 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=95.6
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLD 305 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~--v~~~~~D~~~~~ 305 (441)
..+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...|+.+ +.++++|+.+..
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 56677777888889999999999999999998876 4799999999999999999999999887 999999998744
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
.. ++||.|++++|... ..+ ....++..+.+.++ +|.++.++++.
T Consensus 116 ~~----~~~D~v~~~~~~~~------------------------~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 116 KD----RKYNKIITNPPIRA------------------------GKE-------VLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp TT----SCEEEEEECCCSTT------------------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cc----CCceEEEECCCccc------------------------chh-------HHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 32 67999999988421 011 12467777777777 68888776654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-12 Score=119.22 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=97.9
Q ss_pred cccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEecc
Q 013515 222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGD 300 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D 300 (441)
...++.....++..++...++.+|||+|||+|+.+..++..+++.++|+++|+++.+++.+++++++.|+ ++|+++.+|
T Consensus 60 ~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
T 1sui_A 60 IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP 139 (247)
T ss_dssp GGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred CCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 4556677777777777767788999999999999999999886568999999999999999999999998 579999999
Q ss_pred CCCCCCCCC----CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-Cc
Q 013515 301 FLNLDPKDP----AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VE 375 (441)
Q Consensus 301 ~~~~~~~~~----~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G 375 (441)
+.+..+... ..++||.|++|+++.. ....++.+.++++ ||
T Consensus 140 a~~~l~~l~~~~~~~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG 184 (247)
T 1sui_A 140 ALPVLDEMIKDEKNHGSYDFIFVDADKDN-----------------------------------YLNYHKRLIDLVKVGG 184 (247)
T ss_dssp HHHHHHHHHHSGGGTTCBSEEEECSCSTT-----------------------------------HHHHHHHHHHHBCTTC
T ss_pred HHHHHHHHHhccCCCCCEEEEEEcCchHH-----------------------------------HHHHHHHHHHhCCCCe
Confidence 876432100 0167999999976310 1355777777776 78
Q ss_pred EEEEEc
Q 013515 376 RVVYST 381 (441)
Q Consensus 376 ~lvYsT 381 (441)
.|++..
T Consensus 185 ~lv~d~ 190 (247)
T 1sui_A 185 VIGYDN 190 (247)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 888765
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=123.50 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=79.2
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|..++.....++..+++.++++|||+|||+|..|..+++. .++|+|+|+++.+++.++++++..|.++++++++|+.
T Consensus 24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~ 100 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI 100 (299)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC
T ss_pred eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh
Confidence 5556667778888889999999999999999999999875 3699999999999999999999888889999999998
Q ss_pred CCCCCCCCCCCccEEEEcCCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg 325 (441)
.++. .+||.|++|+|+..
T Consensus 101 ~~~~-----~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 101 KTVF-----PKFDVCTANIPYKI 118 (299)
T ss_dssp SSCC-----CCCSEEEEECCGGG
T ss_pred hCCc-----ccCCEEEEcCCccc
Confidence 8753 46899999999764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=116.98 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=96.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++.+|||+|||+|..++.++... +..+|+++|+++.+++.++++++.+|+.||+++++|+.++.......++||.|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 4578999999999999999999875 458999999999999999999999999889999999988765311126899999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHh
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
+..- . + . ..++..+.++++ ||.+++..+....+|-++. ...+
T Consensus 157 s~a~----~-------------------~---~----------~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~-~~~l 199 (249)
T 3g89_A 157 ARAV----A-------------------P---L----------CVLSELLLPFLEVGGAAVAMKGPRVEEELAPL-PPAL 199 (249)
T ss_dssp EESS----C-------------------C---H----------HHHHHHHGGGEEEEEEEEEEECSCCHHHHTTH-HHHH
T ss_pred ECCc----C-------------------C---H----------HHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHH-HHHH
Confidence 7421 0 0 0 367888888887 7888877777554443333 3333
Q ss_pred chhcCCCeEEec
Q 013515 398 PIAMSFGFQLAT 409 (441)
Q Consensus 398 ~~~~~~~~~~~~ 409 (441)
+ ..+|++..
T Consensus 200 ~---~~G~~~~~ 208 (249)
T 3g89_A 200 E---RLGGRLGE 208 (249)
T ss_dssp H---HHTEEEEE
T ss_pred H---HcCCeEEE
Confidence 2 24565543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-12 Score=118.10 Aligned_cols=126 Identities=10% Similarity=0.128 Sum_probs=97.8
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~ 301 (441)
+.++.....++..++...++.+|||+|||+|..+.+++..+++.++|+++|+++.+++.++++++..|+. +++++++|+
T Consensus 46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 125 (225)
T 3tr6_A 46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA 125 (225)
T ss_dssp GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence 4566667777777777778899999999999999999998765689999999999999999999999986 499999998
Q ss_pred CCCCCCCC---CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE
Q 013515 302 LNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV 377 (441)
Q Consensus 302 ~~~~~~~~---~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l 377 (441)
.+..+... ..++||.|++|++.. + +..++..+.++++ ||.|
T Consensus 126 ~~~~~~~~~~~~~~~fD~v~~~~~~~---------~--------------------------~~~~l~~~~~~L~pgG~l 170 (225)
T 3tr6_A 126 KDTLAELIHAGQAWQYDLIYIDADKA---------N--------------------------TDLYYEESLKLLREGGLI 170 (225)
T ss_dssp HHHHHHHHTTTCTTCEEEEEECSCGG---------G--------------------------HHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHhhhccCCCCccEEEECCCHH---------H--------------------------HHHHHHHHHHhcCCCcEE
Confidence 65432110 015799999999721 0 1346777778777 6888
Q ss_pred EEEcCC
Q 013515 378 VYSTCS 383 (441)
Q Consensus 378 vYsTCS 383 (441)
+...+.
T Consensus 171 v~~~~~ 176 (225)
T 3tr6_A 171 AVDNVL 176 (225)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 765554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=120.65 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=101.2
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEeccCC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFL 302 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~---~v~~~~~D~~ 302 (441)
.|..+.++...+...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.+|+. ++.++.+|+.
T Consensus 207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~ 285 (375)
T 4dcm_A 207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285 (375)
T ss_dssp CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTT
T ss_pred ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhh
Confidence 45677788888888888999999999999999999874 4579999999999999999999999975 5889999998
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+.... ++||.|++|||......+.+ ....+++..+.+.++ ||.++.++
T Consensus 286 ~~~~~----~~fD~Ii~nppfh~~~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 286 SGVEP----FRFNAVLCNPPFHQQHALTD---------------------------NVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp TTCCT----TCEEEEEECCCC-------C---------------------------CHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCC----CCeeEEEECCCcccCcccCH---------------------------HHHHHHHHHHHHhCCCCcEEEEEE
Confidence 74321 68999999999643111100 011367888888777 67776665
Q ss_pred CCCCChhcHHHHHHHh
Q 013515 382 CSIHQVENEDVIKSVL 397 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l 397 (441)
-+..+. +..+.+..
T Consensus 335 n~~~~~--~~~l~~~f 348 (375)
T 4dcm_A 335 NRHLDY--FHKLKKIF 348 (375)
T ss_dssp ETTSCH--HHHHHHHH
T ss_pred ECCcCH--HHHHHHhc
Confidence 444433 33444443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-12 Score=116.06 Aligned_cols=116 Identities=18% Similarity=0.099 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++... +...|+|+|+++.+++.++++++..|+.|+.++++|+..++...+ .++||.|++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~-~~~~d~v~~ 114 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE-PGEVKRVYL 114 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-TTSCCEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC-cCCcCEEEE
Confidence 468899999999999999999885 457999999999999999999999999999999999987541111 157999998
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
..|+.-.-. + |. ..+ ..+..+|..+.+.|+ ||.++++|
T Consensus 115 ~~~~p~~~~--~--------~~---------~~r-----l~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 115 NFSDPWPKK--R--------HE---------KRR-----LTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp ESCCCCCSG--G--------GG---------GGS-----TTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ECCCCCcCc--c--------cc---------ccc-----cCcHHHHHHHHHHcCCCCEEEEEe
Confidence 766321000 0 00 000 014577888888776 78888775
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=106.65 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=99.2
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEe
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLH 298 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~ 298 (441)
+|.+..++. ...+...+.+.++++|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+|+. ++ +++
T Consensus 5 ~g~~t~~~~-~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~ 81 (178)
T 3hm2_A 5 DGQLTKQHV-RALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQ 81 (178)
T ss_dssp -CCSHHHHH-HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEE
T ss_pred CCcccHHHH-HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEe
Confidence 455544433 3455566788899999999999999999998875 4589999999999999999999999986 88 888
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV 377 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l 377 (441)
+|+....+.. .++||.|+++.+... ..+++.+.+.++ ||.+
T Consensus 82 ~d~~~~~~~~--~~~~D~i~~~~~~~~------------------------------------~~~l~~~~~~L~~gG~l 123 (178)
T 3hm2_A 82 QGAPRAFDDV--PDNPDVIFIGGGLTA------------------------------------PGVFAAAWKRLPVGGRL 123 (178)
T ss_dssp CCTTGGGGGC--CSCCSEEEECC-TTC------------------------------------TTHHHHHHHTCCTTCEE
T ss_pred cchHhhhhcc--CCCCCEEEECCcccH------------------------------------HHHHHHHHHhcCCCCEE
Confidence 8885432221 157999997665311 245777888777 7899
Q ss_pred EEEcCCCCChhcHHHHHHHhc
Q 013515 378 VYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 378 vYsTCS~~~~ENe~vV~~~l~ 398 (441)
++++++. ++...+..+++
T Consensus 124 ~~~~~~~---~~~~~~~~~~~ 141 (178)
T 3hm2_A 124 VANAVTV---ESEQMLWALRK 141 (178)
T ss_dssp EEEECSH---HHHHHHHHHHH
T ss_pred EEEeecc---ccHHHHHHHHH
Confidence 9887764 44455555554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-12 Score=121.95 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=78.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-- 309 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-- 309 (441)
.+...|++++|++|||+|||+|+++..+++.++ .++|+|+|+|+.+++.++++++.+| .+++++++|+.+++....
T Consensus 17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHT
T ss_pred HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhc
Confidence 445677889999999999999999999999864 5899999999999999999999988 789999999987652110
Q ss_pred CCCCccEEEEcCCCCC
Q 013515 310 AYSEVRAILLDPSCSG 325 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg 325 (441)
...+||.|++|||||.
T Consensus 95 g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 95 GIEKVDGILMDLGVST 110 (301)
T ss_dssp TCSCEEEEEEECSCCH
T ss_pred CCCCCCEEEEcCccch
Confidence 1147999999999985
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=114.92 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=84.8
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
.++++++|++|||+|||+|+.|..++.... .++|+++|+++.+++.+++++++.|+++|+++++|+.+++ + ++|
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d---~~F 189 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--G---LEF 189 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--G---CCC
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--C---CCc
Confidence 357889999999999999998765544433 4799999999999999999999999989999999998875 2 679
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
|+|+++.- + +| ..++++.+.+.++ ||+||...
T Consensus 190 DvV~~~a~-----~----~d--------------------------~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 190 DVLMVAAL-----A----EP--------------------------KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp SEEEECTT-----C----SC--------------------------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEECCC-----c----cC--------------------------HHHHHHHHHHHcCCCcEEEEEc
Confidence 99998542 1 11 1367888888776 78888764
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=108.62 Aligned_cols=125 Identities=21% Similarity=0.254 Sum_probs=95.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.+|++|||+|||+|..++.++.. ++.++|+|+|+++.+++.+++|++++|+. +|++..+|.....+.. ..||.|
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~---~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET---DQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC---cCCCEE
Confidence 457899999999999999999886 44579999999999999999999999996 5999999986543221 369999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
++ .|.|- ..=..||..+...++ +|++|.+.-+ +...|.+.
T Consensus 89 vi----aG~Gg------------------------------~~i~~Il~~~~~~L~~~~~lVlq~~~-----~~~~vr~~ 129 (225)
T 3kr9_A 89 TI----AGMGG------------------------------RLIARILEEGLGKLANVERLILQPNN-----REDDLRIW 129 (225)
T ss_dssp EE----EEECH------------------------------HHHHHHHHHTGGGCTTCCEEEEEESS-----CHHHHHHH
T ss_pred EE----cCCCh------------------------------HHHHHHHHHHHHHhCCCCEEEEECCC-----CHHHHHHH
Confidence 86 23331 011468888888776 6899887653 67777777
Q ss_pred hchhcCCCeEEec
Q 013515 397 LPIAMSFGFQLAT 409 (441)
Q Consensus 397 l~~~~~~~~~~~~ 409 (441)
|. ..+|++..
T Consensus 130 L~---~~Gf~i~~ 139 (225)
T 3kr9_A 130 LQ---DHGFQIVA 139 (225)
T ss_dssp HH---HTTEEEEE
T ss_pred HH---HCCCEEEE
Confidence 74 34676543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-11 Score=118.65 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+|.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++|++.+|++ ++++++|+.+..... ++||.|++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~~---~~fD~Ii~ 304 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTEE---ARFDIIVT 304 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCTT---CCEEEEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhccccC---CCeEEEEE
Confidence 47889999999999999999986 369999999999999999999999875 889999998876542 68999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHh
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
|||....+... . .....++..+.+.++ ||.++.+++...+.+ ..+.+..
T Consensus 305 npp~~~~~~~~--------------------~-------~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~--~~l~~~f 354 (381)
T 3dmg_A 305 NPPFHVGGAVI--------------------L-------DVAQAFVNVAAARLRPGGVFFLVSNPFLKYE--PLLEEKF 354 (381)
T ss_dssp CCCCCTTCSSC--------------------C-------HHHHHHHHHHHHHEEEEEEEEEEECTTSCHH--HHHHHHH
T ss_pred CCchhhccccc--------------------H-------HHHHHHHHHHHHhcCcCcEEEEEEcCCCChH--HHHHHhh
Confidence 99986433210 0 123477888888777 788888877765443 3444433
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-11 Score=115.63 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=78.0
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----------CC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------AA 292 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----------~~ 292 (441)
..+......+...+++.+|.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.+| ..
T Consensus 88 ~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~ 167 (336)
T 2b25_A 88 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 167 (336)
T ss_dssp CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred ccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence 3444445666777889999999999999999999999987666899999999999999999999754 36
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
++.++.+|+.+.....+ .++||.|++|+|
T Consensus 168 ~v~~~~~d~~~~~~~~~-~~~fD~V~~~~~ 196 (336)
T 2b25_A 168 NVDFIHKDISGATEDIK-SLTFDAVALDML 196 (336)
T ss_dssp CEEEEESCTTCCC--------EEEEEECSS
T ss_pred ceEEEECChHHcccccC-CCCeeEEEECCC
Confidence 89999999988642211 157999999987
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-11 Score=111.27 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=80.3
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
.|+.++...+..+++.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..|+.++.++.+|+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 81 (239)
T 1xxl_A 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL 81 (239)
T ss_dssp -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC
Confidence 477889999999999999999999999999999988763 58999999999999999999999998999999999887
Q ss_pred CCCCCCCCCccEEEEc
Q 013515 305 DPKDPAYSEVRAILLD 320 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~D 320 (441)
+..+ ++||.|++.
T Consensus 82 ~~~~---~~fD~v~~~ 94 (239)
T 1xxl_A 82 PFPD---DSFDIITCR 94 (239)
T ss_dssp CSCT---TCEEEEEEE
T ss_pred CCCC---CcEEEEEEC
Confidence 6443 689999974
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=109.98 Aligned_cols=115 Identities=13% Similarity=0.032 Sum_probs=90.8
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 308 (441)
...+...+.+.++.+|||+|||+|..+..++... ..+|+++|+++.+++.++++++..|+. ++.++++|+.+++. +
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~ 101 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N 101 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-C
Confidence 3445566778899999999999999999999886 358999999999999999999999984 89999999998765 3
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||+|++- +++..-+| ...+|..+.+.++ ||.++.++.
T Consensus 102 ---~~fD~V~~~------~~~~~~~~--------------------------~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 102 ---EKCDVAACV------GATWIAGG--------------------------FAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp ---SCEEEEEEE------SCGGGTSS--------------------------SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ---CCCCEEEEC------CChHhcCC--------------------------HHHHHHHHHHHcCCCeEEEEecC
Confidence 689999962 22211111 1467888888887 687777654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=107.99 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=71.5
Q ss_pred HHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 013515 233 VAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 233 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 310 (441)
+...+. ..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+. ++.++++|+.+..+..
T Consensus 22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 97 (177)
T 2esr_A 22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-- 97 (177)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--
T ss_pred HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh--
Confidence 333444 567899999999999999999876 3479999999999999999999999884 7999999998743211
Q ss_pred CCCccEEEEcCCC
Q 013515 311 YSEVRAILLDPSC 323 (441)
Q Consensus 311 ~~~fD~Il~DpPC 323 (441)
.++||.|++|||+
T Consensus 98 ~~~fD~i~~~~~~ 110 (177)
T 2esr_A 98 TGRFDLVFLDPPY 110 (177)
T ss_dssp CSCEEEEEECCSS
T ss_pred cCCCCEEEECCCC
Confidence 1569999999995
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-11 Score=112.78 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.++.+|||+|||+|..+..++.. +.++|+++|+++.+++.++++++..|+ ++++++++|+.+++... ++||.|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN---EELDLI 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT---TCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC---CCEEEE
Confidence 578999999999999999999887 446999999999999999999999998 45999999998877443 689999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
++....... | . ..+|..+.+.++ ||.++.++++.....
T Consensus 119 ~~~~~~~~~-------~----------------~----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 157 (267)
T 3kkz_A 119 WSEGAIYNI-------G----------------F----------ERGLNEWRKYLKKGGYLAVSECSWFTDE 157 (267)
T ss_dssp EESSCGGGT-------C----------------H----------HHHHHHHGGGEEEEEEEEEEEEEESSSC
T ss_pred EEcCCceec-------C----------------H----------HHHHHHHHHHcCCCCEEEEEEeeecCCC
Confidence 976543211 0 1 357888888887 789988887655443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=115.53 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=103.6
Q ss_pred ccccc-chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHH---hcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 013515 222 CVFLQ-GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 297 (441)
Q Consensus 222 ~~~~Q-d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~---~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~ 297 (441)
....| .....++..++...++.+|||+|||+|+.|..++.. +.+.++|+++|+++.+++.++ ..+ .+|+++
T Consensus 61 ~~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~ 135 (236)
T 2bm8_A 61 LRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLH 135 (236)
T ss_dssp EECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEE
T ss_pred ccccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEE
Confidence 34455 333445555565556789999999999999999997 456689999999999988776 122 689999
Q ss_pred eccCCCC---CCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC-CCC
Q 013515 298 HGDFLNL---DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS-FPG 373 (441)
Q Consensus 298 ~~D~~~~---~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~-~~~ 373 (441)
++|+.+. +... ..+||.|++|... .+ ...+|..+.+ .++
T Consensus 136 ~gD~~~~~~l~~~~--~~~fD~I~~d~~~---------~~--------------------------~~~~l~~~~r~~Lk 178 (236)
T 2bm8_A 136 QGDCSDLTTFEHLR--EMAHPLIFIDNAH---------AN--------------------------TFNIMKWAVDHLLE 178 (236)
T ss_dssp ECCSSCSGGGGGGS--SSCSSEEEEESSC---------SS--------------------------HHHHHHHHHHHTCC
T ss_pred ECcchhHHHHHhhc--cCCCCEEEECCch---------Hh--------------------------HHHHHHHHHHhhCC
Confidence 9999875 3211 1369999998751 01 0356777775 776
Q ss_pred -CcEEEEEc-CCCCChhcHHHHHHHhchhcCCCeEEecCC
Q 013515 374 -VERVVYST-CSIHQVENEDVIKSVLPIAMSFGFQLATPF 411 (441)
Q Consensus 374 -~G~lvYsT-CS~~~~ENe~vV~~~l~~~~~~~~~~~~~~ 411 (441)
||.||++. |.+.+..+++.+..+++.. ..+|++....
T Consensus 179 pGG~lv~~d~~~~~~~~~~~~~~~~l~~~-~~~f~~~~~~ 217 (236)
T 2bm8_A 179 EGDYFIIEDMIPYWYRYAPQLFSEYLGAF-RDVLSMDMLY 217 (236)
T ss_dssp TTCEEEECSCHHHHHHHCHHHHHHHHHTT-TTTEEEETTT
T ss_pred CCCEEEEEeCcccccccCHHHHHHHHHhC-cccEEEcchh
Confidence 78888764 4455567777888888642 1278876543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-11 Score=112.01 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=77.7
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
++.|.......|......+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..|+.++
T Consensus 11 ~~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v 87 (260)
T 1vl5_A 11 HHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQV 87 (260)
T ss_dssp ------------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred ceeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCce
Confidence 4677777778888888888888888899999999999999999988763 4999999999999999999999998899
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.++.+|+..++..+ ++||.|++.
T Consensus 88 ~~~~~d~~~l~~~~---~~fD~V~~~ 110 (260)
T 1vl5_A 88 EYVQGDAEQMPFTD---ERFHIVTCR 110 (260)
T ss_dssp EEEECCC-CCCSCT---TCEEEEEEE
T ss_pred EEEEecHHhCCCCC---CCEEEEEEh
Confidence 99999999877543 689999964
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=114.03 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=94.8
Q ss_pred ccchhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 013515 225 LQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 302 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~ 302 (441)
+++.....+...+. +.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. ++.++++|+.
T Consensus 100 ~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 177 (312)
T 3vc1_A 100 LESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML 177 (312)
T ss_dssp HHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 34444445556666 7889999999999999999999875 368999999999999999999999985 7999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+++... ++||+|++. +++.. .. +..+|..+.+.++ ||.+++++
T Consensus 178 ~~~~~~---~~fD~V~~~------~~l~~-----------------~~----------~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 178 DTPFDK---GAVTASWNN------ESTMY-----------------VD----------LHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp SCCCCT---TCEEEEEEE------SCGGG-----------------SC----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCC---CCEeEEEEC------Cchhh-----------------CC----------HHHHHHHHHHHcCCCcEEEEEE
Confidence 876443 689999952 22210 00 3577888888777 78888877
Q ss_pred CCCC
Q 013515 382 CSIH 385 (441)
Q Consensus 382 CS~~ 385 (441)
....
T Consensus 222 ~~~~ 225 (312)
T 3vc1_A 222 GCWN 225 (312)
T ss_dssp EEEC
T ss_pred cccc
Confidence 5433
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=107.61 Aligned_cols=125 Identities=17% Similarity=0.198 Sum_probs=95.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.+|++|||+|||+|..++.++.. ++..+|+|+|+++.+++.+++|++++|+. +|++..+|..+..... ..||.|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~---~~~D~I 94 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA---DNIDTI 94 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc---cccCEE
Confidence 467899999999999999999886 44579999999999999999999999995 5999999998766432 369998
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
++ .|.|- .+=.+||..+...++ +|.+|-|.-+ +++.|.+.
T Consensus 95 vi----aGmGg------------------------------~lI~~IL~~~~~~l~~~~~lIlqp~~-----~~~~lr~~ 135 (230)
T 3lec_A 95 TI----CGMGG------------------------------RLIADILNNDIDKLQHVKTLVLQPNN-----REDDLRKW 135 (230)
T ss_dssp EE----EEECH------------------------------HHHHHHHHHTGGGGTTCCEEEEEESS-----CHHHHHHH
T ss_pred EE----eCCch------------------------------HHHHHHHHHHHHHhCcCCEEEEECCC-----ChHHHHHH
Confidence 86 23331 011467888877666 6888887643 57777777
Q ss_pred hchhcCCCeEEec
Q 013515 397 LPIAMSFGFQLAT 409 (441)
Q Consensus 397 l~~~~~~~~~~~~ 409 (441)
|. ..+|++..
T Consensus 136 L~---~~Gf~i~~ 145 (230)
T 3lec_A 136 LA---ANDFEIVA 145 (230)
T ss_dssp HH---HTTEEEEE
T ss_pred HH---HCCCEEEE
Confidence 74 34676644
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.4e-11 Score=110.55 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=89.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++...|+.+ ++++++|+..++... ++||+
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~ 117 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN---EELDL 117 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT---TCEEE
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC---CCEEE
Confidence 467889999999999999999999853 499999999999999999999999865 999999998877543 68999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ 386 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~ 386 (441)
|++....... | . ..+|..+.++++ ||.++.++++...
T Consensus 118 v~~~~~l~~~-------~----------------~----------~~~l~~~~~~L~pgG~l~~~~~~~~~ 155 (257)
T 3f4k_A 118 IWSEGAIYNI-------G----------------F----------ERGMNEWSKYLKKGGFIAVSEASWFT 155 (257)
T ss_dssp EEEESCSCCC-------C----------------H----------HHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred EEecChHhhc-------C----------------H----------HHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 9976432110 0 1 357888889887 7888888765443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=119.48 Aligned_cols=141 Identities=9% Similarity=0.051 Sum_probs=98.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCC----cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGK----GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~----~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
++.++.+|||.|||+|+++..++..+... ..|+|+|+++.+++.++.++...|+ ++.++++|+..... ..+
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~----~~~ 201 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL----VDP 201 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC----CCC
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccc----cCC
Confidence 56678999999999999999999887543 7899999999999999999999998 68899999876432 267
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc-CCCCChhcHH
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST-CSIHQVENED 391 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT-CS~~~~ENe~ 391 (441)
||+|+.|||++ .+.. .+. +.+.... . .......+..++.++++.++ +|.+++.+ .++...+.+.
T Consensus 202 fD~Ii~NPPfg---~~~~-~~~-~~~~~~~------~---~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~ 267 (344)
T 2f8l_A 202 VDVVISDLPVG---YYPD-DEN-AKTFELC------R---EEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFA 267 (344)
T ss_dssp EEEEEEECCCS---EESC-HHH-HTTSTTC------C---SSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHH
T ss_pred ccEEEECCCCC---CcCc-hhh-hhhcccc------C---CCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHH
Confidence 99999999973 2211 110 0000000 0 00112245678899988887 68777765 3444444556
Q ss_pred HHHHHh
Q 013515 392 VIKSVL 397 (441)
Q Consensus 392 vV~~~l 397 (441)
.+.+.|
T Consensus 268 ~ir~~l 273 (344)
T 2f8l_A 268 KVDKFI 273 (344)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=124.18 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=112.6
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhc------------CCcEEEEEeCCHHHHHHHHHHHH
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK------------GKGKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~------------~~~~V~a~D~~~~rl~~l~~~~~ 287 (441)
.|.|+--..-+.+++.++.+.++.+|||.|||+|++...+++.+. ....++|+|+++.+++.++.|+.
T Consensus 150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 455555555677888889999999999999999999999988752 12579999999999999999999
Q ss_pred HhCCC--cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccc---cCccCCCCCCCCCCCcccHHHHHHHHHHHH
Q 013515 288 LSGAA--NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER---LDHLLPSHASGHTADPTEMERLNKLSAFQK 362 (441)
Q Consensus 288 ~~g~~--~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~---pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~ 362 (441)
..|+. ++.+.++|+...+.. .+||+|+.+||.++....... .+..++ . ...+.
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~----~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~----------~--------~~~~~ 287 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPS----TLVDVILANPPFGTRPAGSVDINRPDFYVE----------T--------KNNQL 287 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS----SCEEEEEECCCSSCCCTTCCCCCCTTSSSC----------C--------SCHHH
T ss_pred HhCCCcCCCCEeeCCCCCCccc----CCcCEEEECCCCCCcccccchhhHhhcCCC----------C--------cchHH
Confidence 99985 678899999876533 479999999999876543211 111110 0 11256
Q ss_pred HHHHHHhCCCC-CcEEEEEcCC--CCChhcHHHHHH-Hh
Q 013515 363 KALRHALSFPG-VERVVYSTCS--IHQVENEDVIKS-VL 397 (441)
Q Consensus 363 ~lL~~a~~~~~-~G~lvYsTCS--~~~~ENe~vV~~-~l 397 (441)
..+.+++++++ +|++++.++. ++....+..+.+ ++
T Consensus 288 ~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~ 326 (445)
T 2okc_A 288 NFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL 326 (445)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHH
Confidence 78888888777 7888887754 222223444554 44
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=114.44 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=72.4
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
+++....++..++ ++|.+|||+|||+|..+..+++.+.. ..+|+|+|+++.|++.++++++..+. .+|+++++|+.
T Consensus 56 ~~~~i~~l~~~~~--~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~ 133 (261)
T 4gek_A 56 IISMIGMLAERFV--QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 133 (261)
T ss_dssp HHHHHHHHHHHHC--CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHHhC--CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccc
Confidence 4444455555554 68999999999999999999987643 35999999999999999999998886 57999999998
Q ss_pred CCCCCCCCCCCccEEEE
Q 013515 303 NLDPKDPAYSEVRAILL 319 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~ 319 (441)
+++. ++||.|++
T Consensus 134 ~~~~-----~~~d~v~~ 145 (261)
T 4gek_A 134 DIAI-----ENASMVVL 145 (261)
T ss_dssp TCCC-----CSEEEEEE
T ss_pred cccc-----ccccccee
Confidence 8763 46899985
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=113.97 Aligned_cols=148 Identities=15% Similarity=0.159 Sum_probs=106.9
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~ 302 (441)
.++.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+. +|+++.+|+.
T Consensus 55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 134 (232)
T 3cbg_A 55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL 134 (232)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 445555666666666667889999999999999999998765689999999999999999999999984 6999999976
Q ss_pred CCCCCCC---CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 303 NLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 303 ~~~~~~~---~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
+.....+ ..++||.|++|++.. + ....++.+.++++ ||.|+
T Consensus 135 ~~l~~l~~~~~~~~fD~V~~d~~~~---------~--------------------------~~~~l~~~~~~LkpgG~lv 179 (232)
T 3cbg_A 135 ATLEQLTQGKPLPEFDLIFIDADKR---------N--------------------------YPRYYEIGLNLLRRGGLMV 179 (232)
T ss_dssp HHHHHHHTSSSCCCEEEEEECSCGG---------G--------------------------HHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHhcCCCCCcCEEEECCCHH---------H--------------------------HHHHHHHHHHHcCCCeEEE
Confidence 5321100 015799999997721 0 1356777888887 78999
Q ss_pred EEcCCCC--------ChhcHHHHHHHhchh-cCCCeE
Q 013515 379 YSTCSIH--------QVENEDVIKSVLPIA-MSFGFQ 406 (441)
Q Consensus 379 YsTCS~~--------~~ENe~vV~~~l~~~-~~~~~~ 406 (441)
+..+... ..+....+.++.+.. .++.++
T Consensus 180 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (232)
T 3cbg_A 180 IDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVR 216 (232)
T ss_dssp EECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEE
T ss_pred EeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeE
Confidence 8877764 234445666666532 234454
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-10 Score=107.58 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=77.3
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD 305 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~ 305 (441)
......+...+++.+|++|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..|+ +++.+..+|+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 153 (248)
T 2yvl_A 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE 153 (248)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence 444556777788889999999999999999999987 47999999999999999999999998 78999999998754
Q ss_pred CCCCCCCCccEEEEcCC
Q 013515 306 PKDPAYSEVRAILLDPS 322 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpP 322 (441)
... ..||.|++|+|
T Consensus 154 ~~~---~~~D~v~~~~~ 167 (248)
T 2yvl_A 154 VPE---GIFHAAFVDVR 167 (248)
T ss_dssp CCT---TCBSEEEECSS
T ss_pred cCC---CcccEEEECCc
Confidence 222 57999999887
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=120.31 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=92.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G--AANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g--~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++..+ + .++++++.+|+....... .++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--KNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--SSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCceE
Confidence 46899999999999999998764 3479999999999999999998752 2 368999999987643222 167999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC--CCChhcHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS--IHQVENEDVI 393 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS--~~~~ENe~vV 393 (441)
|++|+|+...|... . ..+.+++..+.+.|+ ||.+++.+|+ +++++...++
T Consensus 167 Ii~d~~~~~~~~~~----~-----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 219 (296)
T 1inl_A 167 IIIDSTDPTAGQGG----H-----------------------LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAY 219 (296)
T ss_dssp EEEEC-------------------------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHH
T ss_pred EEEcCCCcccCchh----h-----------------------hhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHH
Confidence 99999975333210 0 012467778878777 7999999998 5567777777
Q ss_pred HHHhc
Q 013515 394 KSVLP 398 (441)
Q Consensus 394 ~~~l~ 398 (441)
+.+.+
T Consensus 220 ~~l~~ 224 (296)
T 1inl_A 220 RRISK 224 (296)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=107.99 Aligned_cols=82 Identities=26% Similarity=0.314 Sum_probs=68.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.+|++|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++.. .+++++++|+.+........++||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence 678999999999999999999998766689999999999999999998765 689999999987431100115799999
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
+|+|
T Consensus 149 ~~~~ 152 (227)
T 1g8a_A 149 EDVA 152 (227)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9988
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=106.20 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=97.5
Q ss_pred HHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 231 SMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 231 ~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
..+...+. +.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+.++.+.++|+.+...
T Consensus 48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 123 (205)
T 3grz_A 48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVD-- 123 (205)
T ss_dssp HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCC--
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCC--
Confidence 33444443 567899999999999999998874 346999999999999999999999998789999999977532
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
++||.|++++|.. ....++..+.++++ +|.++.++.. .
T Consensus 124 ---~~fD~i~~~~~~~-----------------------------------~~~~~l~~~~~~L~~gG~l~~~~~~---~ 162 (205)
T 3grz_A 124 ---GKFDLIVANILAE-----------------------------------ILLDLIPQLDSHLNEDGQVIFSGID---Y 162 (205)
T ss_dssp ---SCEEEEEEESCHH-----------------------------------HHHHHGGGSGGGEEEEEEEEEEEEE---G
T ss_pred ---CCceEEEECCcHH-----------------------------------HHHHHHHHHHHhcCCCCEEEEEecC---c
Confidence 6799999987620 01466777888777 6888876443 2
Q ss_pred hcHHHHHHHhchhcCCCeEEec
Q 013515 388 ENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 388 ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
+....+...++ ..+|+++.
T Consensus 163 ~~~~~~~~~~~---~~Gf~~~~ 181 (205)
T 3grz_A 163 LQLPKIEQALA---ENSFQIDL 181 (205)
T ss_dssp GGHHHHHHHHH---HTTEEEEE
T ss_pred ccHHHHHHHHH---HcCCceEE
Confidence 23444555553 35777654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=103.90 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=99.7
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
..++.-...+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..|+ .++.+.++|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 92 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence 3445556666777888899999999999999999998764 7999999999999999999999998 78999999987
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+..+.. ..||.|+++.+.. + . ..++..+.++++ +|.+++++
T Consensus 93 ~~~~~~---~~~D~v~~~~~~~-------~------------------~----------~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 93 EALCKI---PDIDIAVVGGSGG-------E------------------L----------QEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp HHHTTS---CCEEEEEESCCTT-------C------------------H----------HHHHHHHHHTEEEEEEEEEEE
T ss_pred HhcccC---CCCCEEEECCchH-------H------------------H----------HHHHHHHHHhcCCCcEEEEEe
Confidence 622221 4799999886631 0 0 367888888877 78998887
Q ss_pred CCCCChhcHHHHHHHhc
Q 013515 382 CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~ 398 (441)
|+ .++...+..+++
T Consensus 135 ~~---~~~~~~~~~~l~ 148 (192)
T 1l3i_A 135 IL---LETKFEAMECLR 148 (192)
T ss_dssp CB---HHHHHHHHHHHH
T ss_pred cC---cchHHHHHHHHH
Confidence 75 233334444553
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.4e-11 Score=105.58 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=70.5
Q ss_pred HHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC-C
Q 013515 234 AAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP-A 310 (441)
Q Consensus 234 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~-~ 310 (441)
...+. ..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+ ++++++++|+.+.....+ .
T Consensus 36 ~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (187)
T 2fhp_A 36 FNMIGPYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE 113 (187)
T ss_dssp HHHHCSCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc
Confidence 33443 357899999999999999988774 347999999999999999999999997 579999999977432100 0
Q ss_pred CCCccEEEEcCCC
Q 013515 311 YSEVRAILLDPSC 323 (441)
Q Consensus 311 ~~~fD~Il~DpPC 323 (441)
.++||.|++|||.
T Consensus 114 ~~~fD~i~~~~~~ 126 (187)
T 2fhp_A 114 KLQFDLVLLDPPY 126 (187)
T ss_dssp TCCEEEEEECCCG
T ss_pred CCCCCEEEECCCC
Confidence 1579999999994
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=110.74 Aligned_cols=92 Identities=24% Similarity=0.299 Sum_probs=76.7
Q ss_pred hHHHHHHh--CCCCCCEEEEEcCCCchHHHHHHHHhc----CCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEe
Q 013515 230 SSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLH 298 (441)
Q Consensus 230 s~l~~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~----~~~~V~a~D~~~~rl~~l~~~~~~~g-----~~~v~~~~ 298 (441)
...+...+ .+.++.+|||+|||+|..+..++...+ +.++|+++|+++.+++.++++++..| ..++.++.
T Consensus 67 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 146 (227)
T 2pbf_A 67 HALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH 146 (227)
T ss_dssp HHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE
Confidence 33445555 478899999999999999999999875 45799999999999999999999998 67899999
Q ss_pred ccCCCCC----CCCCCCCCccEEEEcCCCC
Q 013515 299 GDFLNLD----PKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 299 ~D~~~~~----~~~~~~~~fD~Il~DpPCS 324 (441)
+|+.... ... .+||+|++++++.
T Consensus 147 ~d~~~~~~~~~~~~---~~fD~I~~~~~~~ 173 (227)
T 2pbf_A 147 KNIYQVNEEEKKEL---GLFDAIHVGASAS 173 (227)
T ss_dssp CCGGGCCHHHHHHH---CCEEEEEECSBBS
T ss_pred CChHhcccccCccC---CCcCEEEECCchH
Confidence 9998753 222 5799999998863
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-10 Score=105.50 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~Il 318 (441)
.++.+|||+|||+|..+..+|... +...|+|+|+++.+++.++++++..|++|+.++++|+.++.+. .+ .++||.|+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~-~~~~d~v~ 110 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP-DNSLRMVQ 110 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSC-TTCEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcC-CCChheEE
Confidence 367899999999999999999875 4579999999999999999999999999999999998875210 10 26899999
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
+.-|
T Consensus 111 ~~~~ 114 (218)
T 3dxy_A 111 LFFP 114 (218)
T ss_dssp EESC
T ss_pred EeCC
Confidence 9744
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=107.44 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=94.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.+|++|||+|||+|..++.++.. ++..+|+|+|+++.+++.+++|++++|+. +|++..+|..+..... .+||.|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~---~~~D~I 94 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK---DAIDTI 94 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc---ccccEE
Confidence 467899999999999999999886 44579999999999999999999999995 4999999998766431 359999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
++ .|.|- .+=..||..+...++ ++.+|-+.-+ +...|.+.
T Consensus 95 vi----agmGg------------------------------~lI~~IL~~~~~~L~~~~~lIlq~~~-----~~~~lr~~ 135 (244)
T 3gnl_A 95 VI----AGMGG------------------------------TLIRTILEEGAAKLAGVTKLILQPNI-----AAWQLREW 135 (244)
T ss_dssp EE----EEECH------------------------------HHHHHHHHHTGGGGTTCCEEEEEESS-----CHHHHHHH
T ss_pred EE----eCCch------------------------------HHHHHHHHHHHHHhCCCCEEEEEcCC-----ChHHHHHH
Confidence 87 23331 011467888887776 5788877532 67777777
Q ss_pred hchhcCCCeEE
Q 013515 397 LPIAMSFGFQL 407 (441)
Q Consensus 397 l~~~~~~~~~~ 407 (441)
|.. .+|.+
T Consensus 136 L~~---~Gf~i 143 (244)
T 3gnl_A 136 SEQ---NNWLI 143 (244)
T ss_dssp HHH---HTEEE
T ss_pred HHH---CCCEE
Confidence 743 35655
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.16 E-value=9.8e-11 Score=109.18 Aligned_cols=79 Identities=25% Similarity=0.271 Sum_probs=67.1
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC----CCCCCCCCC
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN----LDPKDPAYS 312 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~----~~~~~~~~~ 312 (441)
+.+.++++|||+|||+|..+.+++...+ .++|+++|+++.+++.++++++.. +|+.++.+|+.. .+.. .
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~----~ 142 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV----E 142 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS----C
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC----c
Confidence 3466899999999999999999999865 589999999999999999997765 689999999987 3321 5
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.||+|+.|+|
T Consensus 143 ~~D~v~~~~~ 152 (230)
T 1fbn_A 143 KVDVIYEDVA 152 (230)
T ss_dssp CEEEEEECCC
T ss_pred cEEEEEEecC
Confidence 7999997765
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=103.79 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=92.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----------
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---------- 307 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---------- 307 (441)
+.++.+|||+|||+|+.+..+++.+++ .++|+|+|+++.. ...++.++++|+.+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccc
Confidence 568899999999999999999998753 5899999999831 245788999999876410
Q ss_pred -------------CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-
Q 013515 308 -------------DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG- 373 (441)
Q Consensus 308 -------------~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~- 373 (441)
. ...+||.|++|+++...|.. ..+......++..+|..+.++++
T Consensus 89 ~~~~~~~~~~~~~~-~~~~fD~v~~~~~~~~~g~~---------------------~~d~~~~~~~~~~~l~~~~~~Lkp 146 (201)
T 2plw_A 89 MNNNSVDYKLKEIL-QDKKIDIILSDAAVPCIGNK---------------------IDDHLNSCELTLSITHFMEQYINI 146 (201)
T ss_dssp ---CHHHHHHHHHH-TTCCEEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ccchhhHHHHHhhc-CCCcccEEEeCCCcCCCCCc---------------------ccCHHHHHHHHHHHHHHHHHHccC
Confidence 0 11579999999876544421 12233445667889999999887
Q ss_pred CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCC
Q 013515 374 VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNG 414 (441)
Q Consensus 374 ~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~ 414 (441)
||.++.++.. .++...+...+.. .|..+......
T Consensus 147 gG~lv~~~~~---~~~~~~l~~~l~~----~f~~v~~~~~~ 180 (201)
T 2plw_A 147 GGTYIVKMYL---GSQTNNLKTYLKG----MFQLVHTTKPK 180 (201)
T ss_dssp EEEEEEEEEC---STTHHHHHHHHHT----TEEEEEECCCC
T ss_pred CCEEEEEEeC---CCCHHHHHHHHHH----HHheEEEECCc
Confidence 6887765432 3444455555531 35544443333
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=105.79 Aligned_cols=100 Identities=22% Similarity=0.210 Sum_probs=81.5
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|....+......+...+.+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++++...|++++.+..+|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 136 (215)
T 2yxe_A 57 GQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD 136 (215)
T ss_dssp TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC
T ss_pred CcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 34444444455666777888999999999999999999999875557999999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+...... .++||+|+++.+.
T Consensus 137 ~~~~~~~---~~~fD~v~~~~~~ 156 (215)
T 2yxe_A 137 GTLGYEP---LAPYDRIYTTAAG 156 (215)
T ss_dssp GGGCCGG---GCCEEEEEESSBB
T ss_pred cccCCCC---CCCeeEEEECCch
Confidence 8543322 2579999988664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=108.23 Aligned_cols=84 Identities=25% Similarity=0.259 Sum_probs=69.3
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.+.+|++|||+|||+|..+.++++..++.++|+++|+++.+++.+.++++.. .+++++++|+.+........++||+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEE
Confidence 44678999999999999999999998766689999999999999998888876 6899999999874310001257999
Q ss_pred EEEcCC
Q 013515 317 ILLDPS 322 (441)
Q Consensus 317 Il~DpP 322 (441)
|++|+|
T Consensus 151 V~~~~~ 156 (233)
T 2ipx_A 151 IFADVA 156 (233)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999988
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=113.26 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--------CCCcEEEEeccCCCCCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--------GAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--------g~~~v~~~~~D~~~~~~~~~~ 310 (441)
+.++.+|||+|||+|..+..++... +...|+++|+++.+++.++++++.+ |+.|+.++.+|+.+..+..-.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 3578899999999999999999885 3469999999999999999999987 888999999999873221101
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.+.+|.|++.-|..-... + +.. .+ ..|..+|..+.++++ ||.|+.+|
T Consensus 126 ~~~~d~v~~~~p~p~~k~--~--------~~~---~r-----------~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQ--R--------KHK---AR-----------IITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TTCEEEEEEESCCCC----------------C---SS-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCEEEEECCCccccc--c--------hhH---Hh-----------hccHHHHHHHHHHcCCCCEEEEEe
Confidence 267899987655321110 0 000 00 013578888888887 67777654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-10 Score=112.18 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=83.6
Q ss_pred CChhhhcCcccccchh------hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC----------------------
Q 013515 214 VHPLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---------------------- 265 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~s------s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~---------------------- 265 (441)
..++++.|+...|..+ +..++.+....++..|||.|||+|++++.++....+
T Consensus 162 G~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w 241 (385)
T 3ldu_A 162 GDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIW 241 (385)
T ss_dssp CSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHH
T ss_pred CChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHH
Confidence 3466777876666332 223334556678999999999999999998877432
Q ss_pred ---------------CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 266 ---------------KGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 266 ---------------~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
..+|+++|+++.+++.+++|++.+|+. +|++.++|+.++... .+||+|++|||.
T Consensus 242 ~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPPy 311 (385)
T 3ldu_A 242 WDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCCC
T ss_pred HHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCCC
Confidence 157999999999999999999999985 799999999987653 579999999995
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-11 Score=112.30 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHh---CCCc----------------------
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLS---GAAN---------------------- 293 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~---g~~~---------------------- 293 (441)
.++.+|||+|||+|..+..++..+ .+..+|+++|+++.+++.+++++... |+.+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 467899999999999999999873 23468999999999999999998876 5532
Q ss_pred ----EE-------------EEeccCCCCCCC----CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHH
Q 013515 294 ----IE-------------VLHGDFLNLDPK----DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEME 352 (441)
Q Consensus 294 ----v~-------------~~~~D~~~~~~~----~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~ 352 (441)
+. +.++|+.+.... . ..+||+|++|||+.....+.+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~fD~Iv~npp~~~~~~~~~--------------------- 186 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLA--GSAPDVVLTDLPYGERTHWEG--------------------- 186 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHT--TCCCSEEEEECCGGGSSSSSS---------------------
T ss_pred hhhhhhhhccccccccccceeecccccccccccccC--CCCceEEEeCCCeeccccccc---------------------
Confidence 66 889998774320 1 147999999999754332110
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 353 RLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 353 ~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
......+..++..+.++++ ||.++++.++
T Consensus 187 --~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 187 --QVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp --CCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred --cccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 0112345677888888777 7888886555
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=112.26 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=95.8
Q ss_pred cccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEecc
Q 013515 222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGD 300 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D 300 (441)
.+.+......++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+ ++++++++|
T Consensus 50 ~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d 129 (229)
T 2avd_A 50 DSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP 129 (229)
T ss_dssp GGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred CCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcC
Confidence 3445555555666666667789999999999999999998876568999999999999999999999998 689999999
Q ss_pred CCCCCCCCC---CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcE
Q 013515 301 FLNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VER 376 (441)
Q Consensus 301 ~~~~~~~~~---~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~ 376 (441)
+.+...... ..++||.|++|+|.. . +..++..+.++++ ||.
T Consensus 130 ~~~~~~~~~~~~~~~~~D~v~~d~~~~----------------------~-------------~~~~l~~~~~~L~pgG~ 174 (229)
T 2avd_A 130 ALETLDELLAAGEAGTFDVAVVDADKE----------------------N-------------CSAYYERCLQLLRPGGI 174 (229)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECSCST----------------------T-------------HHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHhcCCCCCccEEEECCCHH----------------------H-------------HHHHHHHHHHHcCCCeE
Confidence 865421110 015799999998821 0 1356777777777 688
Q ss_pred EEEEcCC
Q 013515 377 VVYSTCS 383 (441)
Q Consensus 377 lvYsTCS 383 (441)
++...+.
T Consensus 175 lv~~~~~ 181 (229)
T 2avd_A 175 LAVLRVL 181 (229)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 8776554
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.8e-10 Score=111.20 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=83.8
Q ss_pred CChhhhcCcccccch------hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC----------------------
Q 013515 214 VHPLIVNGCVFLQGK------ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---------------------- 265 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~------ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~---------------------- 265 (441)
..++++.||-..|.. -+..++.+.+..++..|||.|||+|++++.++....+
T Consensus 168 g~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w 247 (393)
T 3k0b_A 168 GAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVW 247 (393)
T ss_dssp SSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHH
T ss_pred CCcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHH
Confidence 345666676544432 2333445667788999999999999999998876543
Q ss_pred ---------------CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 266 ---------------KGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 266 ---------------~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
..+|+++|+++.+++.+++|++.+|+. +|.+.++|+.+++.. .+||+|++|||.
T Consensus 248 ~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPY 317 (393)
T 3k0b_A 248 ADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCC
T ss_pred HHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCC
Confidence 146999999999999999999999985 599999999987653 579999999996
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.2e-11 Score=109.37 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=79.3
Q ss_pred cccccchhhHHHHHHh--CCCCCCEEEEEcCCCchHHHHHHHHhcC-----CcEEEEEeCCHHHHHHHHHHHHHhC----
Q 013515 222 CVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKG-----KGKIVACELNKERVRRLKDTIKLSG---- 290 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~-----~~~V~a~D~~~~rl~~l~~~~~~~g---- 290 (441)
..+.|......+...+ .+.++++|||+|||+|..+..++...+. .++|+++|+++.+++.++++++..|
T Consensus 63 ~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 142 (227)
T 1r18_A 63 VTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML 142 (227)
T ss_dssp EEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc
Confidence 3444555455566666 4788999999999999999999997653 3699999999999999999999877
Q ss_pred -CCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 291 -AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 291 -~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
..++.++.+|+....+. ...||+|+++.++
T Consensus 143 ~~~~v~~~~~d~~~~~~~---~~~fD~I~~~~~~ 173 (227)
T 1r18_A 143 DSGQLLIVEGDGRKGYPP---NAPYNAIHVGAAA 173 (227)
T ss_dssp HHTSEEEEESCGGGCCGG---GCSEEEEEECSCB
T ss_pred CCCceEEEECCcccCCCc---CCCccEEEECCch
Confidence 67899999999873222 2579999999885
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=107.39 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=81.6
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~ 298 (441)
..|....+......+...+.+.++.+|||+|||+|..+..++...+ .+|+++|+++.+++.++++++..|+.++.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~ 146 (235)
T 1jg1_A 69 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL 146 (235)
T ss_dssp STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3455556666666777778889999999999999999999999864 78999999999999999999999998899999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+.. .... ...||+|+++.+.
T Consensus 147 ~d~~~-~~~~--~~~fD~Ii~~~~~ 168 (235)
T 1jg1_A 147 GDGSK-GFPP--KAPYDVIIVTAGA 168 (235)
T ss_dssp SCGGG-CCGG--GCCEEEEEECSBB
T ss_pred CCccc-CCCC--CCCccEEEECCcH
Confidence 99832 2221 1459999998764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-10 Score=111.50 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=82.7
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
.|......+...+++++|++|||+|||+|..+..+++.....++|+++|+++.+++.++++++..|+.++.+..+|+.+.
T Consensus 59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence 34455666777788899999999999999999999998654578999999999999999999999998899999999875
Q ss_pred CCCCCCCCCccEEEEcCCCC
Q 013515 305 DPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCS 324 (441)
.+.. ++||+|++++++.
T Consensus 139 ~~~~---~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 139 VPEF---SPYDVIFVTVGVD 155 (317)
T ss_dssp CGGG---CCEEEEEECSBBS
T ss_pred cccC---CCeEEEEEcCCHH
Confidence 5432 6799999998864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=108.17 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=91.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH------hCCCcEEEEeccCCC-CC--CCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------SGAANIEVLHGDFLN-LD--PKDP 309 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~------~g~~~v~~~~~D~~~-~~--~~~~ 309 (441)
..++.+|||+|||+|..+..+|... +...|+|+|+++.+++.++++++. .+..||.++++|+.. ++ ...
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~- 121 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK- 121 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCT-
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCC-
Confidence 3467799999999999999999875 457999999999999999998875 467899999999987 43 222
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
++||.|++.-|.. ..+ .+|. .-...+..+|..+.+.|+ ||.|+.+|+.
T Consensus 122 --~~~D~v~~~~~dp---------~~k-~~h~--------------krr~~~~~~l~~~~~~LkpGG~l~~~td~----- 170 (235)
T 3ckk_A 122 --GQLTKMFFLFPDP---------HFK-RTKH--------------KWRIISPTLLAEYAYVLRVGGLVYTITDV----- 170 (235)
T ss_dssp --TCEEEEEEESCC-----------------------------------CCCHHHHHHHHHHEEEEEEEEEEESC-----
T ss_pred --cCeeEEEEeCCCc---------hhh-hhhh--------------hhhhhhHHHHHHHHHHCCCCCEEEEEeCC-----
Confidence 6799998865521 000 0000 000123467888888777 7888887763
Q ss_pred cHHHHHHHhchh-cCCCeEEe
Q 013515 389 NEDVIKSVLPIA-MSFGFQLA 408 (441)
Q Consensus 389 Ne~vV~~~l~~~-~~~~~~~~ 408 (441)
+..+.++++.. .++.|+..
T Consensus 171 -~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 171 -LELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp -HHHHHHHHHHHHTSTTEEEE
T ss_pred -HHHHHHHHHHHHHCCCcccc
Confidence 34444444322 24457765
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=101.36 Aligned_cols=121 Identities=26% Similarity=0.316 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--------CCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--------PKDPA 310 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~--------~~~~~ 310 (441)
+.++.+|||+|||+|..+..+++.+++..+++++|+++ +++ ..++.+.++|+.+.+ ...
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~-- 86 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERVGD-- 86 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHHTT--
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccCCC--
Confidence 67899999999999999999999875557999999998 653 257899999998764 222
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhc
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~EN 389 (441)
++||.|++|+|+...|.. ..+.......+..++..+.++++ +|.++.++. ..++
T Consensus 87 -~~~D~i~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~---~~~~ 141 (180)
T 1ej0_A 87 -SKVQVVMSDMAPNMSGTP---------------------AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF---QGEG 141 (180)
T ss_dssp -CCEEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE---SSTT
T ss_pred -CceeEEEECCCccccCCC---------------------ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe---cCCc
Confidence 579999999998766531 12223344556888999988887 677776543 2334
Q ss_pred HHHHHHHh
Q 013515 390 EDVIKSVL 397 (441)
Q Consensus 390 e~vV~~~l 397 (441)
...+...+
T Consensus 142 ~~~~~~~~ 149 (180)
T 1ej0_A 142 FDEYLREI 149 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444455
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=116.88 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=97.9
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~ 298 (441)
..|.++-.+.-...++..+.+.++.+|||+|||+|+.+..+++..+....|+|+|+++.+++.+ .++.+++
T Consensus 17 ~~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~ 87 (421)
T 2ih2_A 17 SLGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGIL 87 (421)
T ss_dssp ----CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEE
T ss_pred cCceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEe
Confidence 3455665566677777788766678999999999999999998864457999999999998766 4789999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHH----------HHHHHHHHHHH
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKL----------SAFQKKALRHA 368 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l----------~~~Q~~lL~~a 368 (441)
+|+...... ++||+|+.+||+...+...+-. .+ ...+....+ ...+..++.++
T Consensus 88 ~D~~~~~~~----~~fD~Ii~NPPy~~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 150 (421)
T 2ih2_A 88 ADFLLWEPG----EAFDLILGNPPYGIVGEASKYP-----IH--------VFKAVKDLYKKAFSTWKGKYNLYGAFLEKA 150 (421)
T ss_dssp SCGGGCCCS----SCEEEEEECCCCCCBSCTTTCS-----BC--------CCHHHHHHHHHHCTTCCTTCCHHHHHHHHH
T ss_pred CChhhcCcc----CCCCEEEECcCccCcccccccc-----cc--------cCHHHHHHHHHhhhcccCCccHHHHHHHHH
Confidence 999876532 6799999999998765421100 00 001111111 12566889999
Q ss_pred hCCCC-CcEEEEEcCC
Q 013515 369 LSFPG-VERVVYSTCS 383 (441)
Q Consensus 369 ~~~~~-~G~lvYsTCS 383 (441)
.++++ +|.+++.+++
T Consensus 151 ~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 151 VRLLKPGGVLVFVVPA 166 (421)
T ss_dssp HHHEEEEEEEEEEEEG
T ss_pred HHHhCCCCEEEEEECh
Confidence 99887 7888888765
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.10 E-value=6e-10 Score=101.85 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=88.4
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
...+...+.+.++ +|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+ .++.++++|+.+++...
T Consensus 33 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 3444556666667 9999999999999999987 347999999999999999999999997 47999999999877443
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||.|++...... -+| ...+|..+.+.++ ||.++.++.
T Consensus 110 ---~~~D~v~~~~~l~~------~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 110 ---NYADLIVSRGSVFF------WED--------------------------VATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp ---TCEEEEEEESCGGG------CSC--------------------------HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ---ccccEEEECchHhh------ccC--------------------------HHHHHHHHHHhCCCCCEEEEEec
Confidence 68999997654211 011 1357788888777 677777643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-11 Score=103.73 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..+..++... ..|+++|+++.+++.++++++..++ +++++++|+.+..... ...++||.|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 78899999999999999998862 3499999999999999999999998 8999999987743211 00137999999
Q ss_pred cCCCC
Q 013515 320 DPSCS 324 (441)
Q Consensus 320 DpPCS 324 (441)
|||..
T Consensus 117 ~~~~~ 121 (171)
T 1ws6_A 117 APPYA 121 (171)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 99965
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.6e-10 Score=107.31 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=94.1
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~ 309 (441)
..+...+.+.+|.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...|+. ++.++.+|+.++ .
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~- 135 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D- 135 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C-
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C-
Confidence 3455667788999999999999999999998864 68999999999999999999999985 899999999876 2
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
++||+|++.. ++..-||.. ..... .....++..+.++++ ||.++.++.+....
T Consensus 136 --~~fD~v~~~~------~~~~~~d~~----------~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 189 (302)
T 3hem_A 136 --EPVDRIVSLG------AFEHFADGA----------GDAGF-------ERYDTFFKKFYNLTPDDGRMLLHTITIPDK 189 (302)
T ss_dssp --CCCSEEEEES------CGGGTTCCS----------SCCCT-------THHHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred --CCccEEEEcc------hHHhcCccc----------cccch-------hHHHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence 6799999652 222222210 00000 112467888888887 78888887765543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-09 Score=110.34 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=82.9
Q ss_pred CChhhhcCcccccchh------hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC----------------------
Q 013515 214 VHPLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---------------------- 265 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~s------s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~---------------------- 265 (441)
..++++-||-..|..+ +..++.+.+..+++.|+|.+||+|++.+.++....+
T Consensus 161 g~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w 240 (384)
T 3ldg_A 161 GPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALV 240 (384)
T ss_dssp SSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHH
T ss_pred CCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHH
Confidence 3456677765544332 233445566788999999999999999988876543
Q ss_pred ---------------CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 266 ---------------KGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 266 ---------------~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
..+|+++|+++.+++.+++|++.+|+. .|++.++|+.+++.. .+||.|++|||+
T Consensus 241 ~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPY 310 (384)
T 3ldg_A 241 TRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPY 310 (384)
T ss_dssp HHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCC
T ss_pred HHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCch
Confidence 146999999999999999999999986 599999999988653 479999999997
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-09 Score=103.58 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC-CCCCCC--CCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL-DPKDPA--YSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~-~~~~~~--~~~fD~ 316 (441)
++.+|||+|||+|..+..++.... ..+|+++|+++.+++.++++++.+|+.+ ++++++|+.+. ....+. .++||.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 578999999999999999988764 3799999999999999999999999864 99999998762 211110 147999
Q ss_pred EEEcCCCCCCc
Q 013515 317 ILLDPSCSGSG 327 (441)
Q Consensus 317 Il~DpPCSg~G 327 (441)
|++|||+...+
T Consensus 144 i~~npp~~~~~ 154 (254)
T 2h00_A 144 CMCNPPFFANQ 154 (254)
T ss_dssp EEECCCCC---
T ss_pred EEECCCCccCc
Confidence 99999998665
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-11 Score=110.84 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=94.9
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~ 302 (441)
.++.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+.+ +.++.+|+.
T Consensus 43 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 43 QISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 4555566666677777789999999999999999999987656899999999999999999999999865 999999986
Q ss_pred CCCCCC-------------CCC-CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 013515 303 NLDPKD-------------PAY-SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 368 (441)
Q Consensus 303 ~~~~~~-------------~~~-~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a 368 (441)
+..+.. +.. ++||.|++|... ++ . ..++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~---------~~----------------~----------~~~l~~~ 167 (239)
T 2hnk_A 123 ETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK---------EN----------------Y----------PNYYPLI 167 (239)
T ss_dssp HHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG---------GG----------------H----------HHHHHHH
T ss_pred HHHHHHHhhcccccccccccCCCCCcCEEEEeCCH---------HH----------------H----------HHHHHHH
Confidence 532110 001 469999998531 00 0 2457777
Q ss_pred hCCCC-CcEEEEEcCCC
Q 013515 369 LSFPG-VERVVYSTCSI 384 (441)
Q Consensus 369 ~~~~~-~G~lvYsTCS~ 384 (441)
.++++ ||.++..++..
T Consensus 168 ~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 168 LKLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHHEEEEEEEEEECSSG
T ss_pred HHHcCCCeEEEEEcccc
Confidence 77776 78888877554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=104.24 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=92.0
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 307 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~ 307 (441)
-...+...+.+.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...|+. ++.++.+|+.+++..
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 34455566778899999999999999999999875 379999999999999999999999874 799999999987654
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+ ++||+|++... +..-+| + ..+|..+.+.++ ||.++.++..
T Consensus 127 ~---~~fD~v~~~~~------l~~~~~----------------~----------~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 127 D---ASFDAVWALES------LHHMPD----------------R----------GRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp T---TCEEEEEEESC------TTTSSC----------------H----------HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred C---CCccEEEEech------hhhCCC----------------H----------HHHHHHHHHHcCCCeEEEEEEee
Confidence 3 68999986322 211111 1 367888888887 6888777654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=120.24 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=110.0
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC-----------------cEEEEEeCCHHHHHH
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----------------GKIVACELNKERVRR 281 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~-----------------~~V~a~D~~~~rl~~ 281 (441)
..|.|+--+.-+.+++.++.+.+|.+|+|.|||+|++.+.++..+... ..++|+|+++.+++.
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l 226 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 226 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence 346666555667778889999999999999999999999998876421 379999999999999
Q ss_pred HHHHHHHhCCCc-----EEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHH
Q 013515 282 LKDTIKLSGAAN-----IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNK 356 (441)
Q Consensus 282 l~~~~~~~g~~~-----v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
++.|+...|+.+ +.+.++|+...+... ..+||+|+.|||+++......+.+...+ .
T Consensus 227 A~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~--~~~fD~Vv~NPPf~~~~~~~~~~~~~~~----------~------- 287 (541)
T 2ar0_A 227 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN--LPKAHIVATNPPFGSAAGTNITRTFVHP----------T------- 287 (541)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT--SCCEEEEEECCCCTTCSSCCCCSCCSSC----------C-------
T ss_pred HHHHHHHhCCCccccccCCeEeCCCccccccc--ccCCeEEEECCCcccccchhhHhhcCCC----------C-------
Confidence 999999888875 788999987654211 2579999999999876532211111000 0
Q ss_pred HHHHHHHHHHHHhCCCC-CcEEEEEcCC--CCChhcHHHHHHHh
Q 013515 357 LSAFQKKALRHALSFPG-VERVVYSTCS--IHQVENEDVIKSVL 397 (441)
Q Consensus 357 l~~~Q~~lL~~a~~~~~-~G~lvYsTCS--~~~~ENe~vV~~~l 397 (441)
...+...+.+++++++ +|++++.+.. ++....+..+.+.|
T Consensus 288 -~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L 330 (541)
T 2ar0_A 288 -SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 330 (541)
T ss_dssp -SCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHH
Confidence 1123467888888777 6877766542 22322345565544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=105.35 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=78.7
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
.|....+......+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...| ++.++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~ 123 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILG 123 (231)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEES
T ss_pred CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEEC
Confidence 34445555556667777888899999999999999999999873 699999999999999999998877 8999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCC
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|+....+. .++||+|+++.++
T Consensus 124 d~~~~~~~---~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 124 DGTLGYEE---EKPYDRVVVWATA 144 (231)
T ss_dssp CGGGCCGG---GCCEEEEEESSBB
T ss_pred Cccccccc---CCCccEEEECCcH
Confidence 99873322 2679999998764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=101.13 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=64.2
Q ss_pred chhhHHHHHHhCC--CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 227 GKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 227 d~ss~l~~~~l~~--~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
...+.+++..++. .++.+|||+|||+|..+..++... +|+|+|+++.+++. ..+++++++|+.+.
T Consensus 7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~ 73 (170)
T 3q87_B 7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLCS 73 (170)
T ss_dssp CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTTT
T ss_pred CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhhh
Confidence 3445555555655 678899999999999999888752 99999999999987 35688999999873
Q ss_pred CCCCCCCCCccEEEEcCCCC
Q 013515 305 DPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCS 324 (441)
.. . ++||.|+++||..
T Consensus 74 ~~-~---~~fD~i~~n~~~~ 89 (170)
T 3q87_B 74 IN-Q---ESVDVVVFNPPYV 89 (170)
T ss_dssp BC-G---GGCSEEEECCCCB
T ss_pred cc-c---CCCCEEEECCCCc
Confidence 22 1 6899999999964
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-10 Score=99.65 Aligned_cols=87 Identities=22% Similarity=0.141 Sum_probs=74.1
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
....+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..+++++.++.+|+.+++. .
T Consensus 20 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~ 95 (199)
T 2xvm_A 20 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-D 95 (199)
T ss_dssp CCHHHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-C
T ss_pred ccHHHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-C
Confidence 3445566777778899999999999999999886 36999999999999999999999998889999999988765 2
Q ss_pred CCCCCccEEEEcCC
Q 013515 309 PAYSEVRAILLDPS 322 (441)
Q Consensus 309 ~~~~~fD~Il~DpP 322 (441)
++||.|++...
T Consensus 96 ---~~~D~v~~~~~ 106 (199)
T 2xvm_A 96 ---RQYDFILSTVV 106 (199)
T ss_dssp ---CCEEEEEEESC
T ss_pred ---CCceEEEEcch
Confidence 68999997543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=99.19 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=90.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..|+.++.+.++|+.+..+. ++||.|+++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE----PPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC----SCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCcc----CCcCEEEEe
Confidence 47899999999999999999875 3579999999999999999999999998899999999887632 679999964
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhch
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPI 399 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~ 399 (441)
.- . . ...++..+.++++ ||.++...... .++.+..++
T Consensus 140 ~~----~-------------------~-------------~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~-- 177 (207)
T 1jsx_A 140 AF----A-------------------S-------------LNDMVSWCHHLPGEQGRFYALKGQM----PEDEIALLP-- 177 (207)
T ss_dssp CS----S-------------------S-------------HHHHHHHHTTSEEEEEEEEEEESSC----CHHHHHTSC--
T ss_pred cc----C-------------------C-------------HHHHHHHHHHhcCCCcEEEEEeCCC----chHHHHHHh--
Confidence 21 0 0 1367888888887 67777664432 233344443
Q ss_pred hcCCCeEEec
Q 013515 400 AMSFGFQLAT 409 (441)
Q Consensus 400 ~~~~~~~~~~ 409 (441)
. +|+++.
T Consensus 178 --~-g~~~~~ 184 (207)
T 1jsx_A 178 --E-EYQVES 184 (207)
T ss_dssp --T-TEEEEE
T ss_pred --c-CCceee
Confidence 2 777655
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-09 Score=108.77 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=102.9
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|..+.++...+.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+++. ++++.+|+....
T Consensus 182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~- 258 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV- 258 (343)
T ss_dssp CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC-
T ss_pred cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc-
Confidence 4567788888877778899999999999999999874 4469999999999999999999998875 567889987643
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. ++||.|+++||... |. . ........++..+.+.++ ||.++.++++..
T Consensus 259 -~---~~fD~Iv~~~~~~~-g~----------------------~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 259 -K---GRFDMIISNPPFHD-GM----------------------Q----TSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp -C---SCEEEEEECCCCCS-SS----------------------H----HHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred -c---CCeeEEEECCCccc-Cc----------------------c----CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 2 67999999999531 11 0 011234578999999887 788888888766
Q ss_pred ChhcHHHHHHHh
Q 013515 386 QVENEDVIKSVL 397 (441)
Q Consensus 386 ~~ENe~vV~~~l 397 (441)
+.+ .......
T Consensus 308 ~~~--~~l~~~f 317 (343)
T 2pjd_A 308 PYP--DVLDETF 317 (343)
T ss_dssp SHH--HHHHHHH
T ss_pred CcH--HHHHHhc
Confidence 543 3444444
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-10 Score=106.49 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=91.5
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
..+.+...+....++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...+. +++++++|+.+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~ 87 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN 87 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC
Confidence 3344444455677899999999999999999998865457999999999999999999988776 899999999987652
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
++||.|++.... +.+ +| . ..+|..+.+.++ ||.++.....
T Consensus 88 ----~~fD~v~~~~~l---~~~---~~----------------~----------~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 ----DKYDIAICHAFL---LHM---TT----------------P----------ETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ----SCEEEEEEESCG---GGC---SS----------------H----------HHHHHHHHHTEEEEEEEEEEECC
T ss_pred ----CCeeEEEECChh---hcC---CC----------------H----------HHHHHHHHHHcCCCCEEEEEecc
Confidence 689999975431 111 11 1 367888888887 6877766554
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.04 E-value=9.9e-10 Score=101.02 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=87.7
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNL 304 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-----~v~~~~~D~~~~ 304 (441)
...+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...|+. ++.++++|+...
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 3445556666788999999999999999998863 3469999999999999999999888775 799999998655
Q ss_pred CCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+... ++||.|++.-. +.. .... ....+|+.+.+.++ ||.++.+.+
T Consensus 97 ~~~~---~~fD~v~~~~~------l~~-----------------~~~~-------~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 97 DKRF---HGYDAATVIEV------IEH-----------------LDLS-------RLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp CGGG---CSCSEEEEESC------GGG-----------------CCHH-------HHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cccC---CCcCEEeeHHH------HHc-----------------CCHH-------HHHHHHHHHHHHcCCCEEEEEccC
Confidence 4332 68999995322 211 0111 12467888888887 676665554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=99.38 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=63.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++. +++++++|+.+++ ++||.|
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~------~~~D~v 114 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS------GKYDTW 114 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC------CCEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC------CCeeEE
Confidence 4567899999999999999999876 34689999999999999999875 6789999998864 579999
Q ss_pred EEcCCC
Q 013515 318 LLDPSC 323 (441)
Q Consensus 318 l~DpPC 323 (441)
++|||.
T Consensus 115 ~~~~p~ 120 (200)
T 1ne2_A 115 IMNPPF 120 (200)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999995
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=116.27 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+|.+|||+|||+|..++.++.. ..+|+++|+++.+++.+++|++.+ |+++++++++|+.++.... ...+||+|+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~-~~~~fDvV~ 168 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI-KTFHPDYIY 168 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH-HHHCCSEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc-cCCCceEEE
Confidence 5899999999999999988875 369999999999999999999999 9889999999998753210 014799999
Q ss_pred EcCCCCCC
Q 013515 319 LDPSCSGS 326 (441)
Q Consensus 319 ~DpPCSg~ 326 (441)
+|||..+.
T Consensus 169 lDPPrr~~ 176 (410)
T 3ll7_A 169 VDPARRSG 176 (410)
T ss_dssp ECCEEC--
T ss_pred ECCCCcCC
Confidence 99998874
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=107.71 Aligned_cols=112 Identities=17% Similarity=0.107 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..+|.+|||+|||+|..+.++++.. ...|+++|+++.+++.++++.+..+. +++++.+|+..+....+ .++||.|+
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~-~~~FD~i~ 133 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLP-DGHFDGIL 133 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSC-TTCEEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhccccc-ccCCceEE
Confidence 3679999999999999999988753 25899999999999999999988774 68889999876543322 26799999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.|+..+...... . .....+++++.++|| ||+++|.+
T Consensus 134 ~D~~~~~~~~~~-~--------------------------~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 134 YDTYPLSEETWH-T--------------------------HQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ECCCCCBGGGTT-T--------------------------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred Eeeeecccchhh-h--------------------------cchhhhhhhhhheeCCCCEEEEEe
Confidence 998755433221 0 112467788888887 78888854
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=98.43 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCC--------cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCCC--
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGK--------GKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDPK-- 307 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~--------~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~-~~D~~~~~~~-- 307 (441)
+.+|.+|||+|||+|..+..+++.++.. ++|+++|+++.+ +..+++++ .+|+......
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 5789999999999999999999987543 799999999831 34578888 8888764310
Q ss_pred ---CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 308 ---DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 308 ---~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.....+||+|++|+++..+|.. ..+......++..++..+.++++ ||.++.+++.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFR---------------------DLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCc---------------------ccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 0001479999999876555531 11222344566788999998887 7888877653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-09 Score=103.42 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=92.0
Q ss_pred cchhhHHHHHHh----CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEecc
Q 013515 226 QGKASSMVAAAL----APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGD 300 (441)
Q Consensus 226 Qd~ss~l~~~~l----~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D 300 (441)
|......+...+ ...++.+|||+|||+|..+..++...+ .+|+++|+++.+++.++++++..|+ +++.++++|
T Consensus 63 ~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 140 (297)
T 2o57_A 63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence 333344555566 778899999999999999999998762 5999999999999999999999998 579999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY 379 (441)
+.+++..+ ++||+|++.- ++..-+| ...+|..+.+.++ ||.++.
T Consensus 141 ~~~~~~~~---~~fD~v~~~~------~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~ 185 (297)
T 2o57_A 141 FLEIPCED---NSYDFIWSQD------AFLHSPD--------------------------KLKVFQECARVLKPRGVMAI 185 (297)
T ss_dssp TTSCSSCT---TCEEEEEEES------CGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCC---CCEeEEEecc------hhhhcCC--------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 99877543 6899998632 2211111 1467778878777 688877
Q ss_pred EcCC
Q 013515 380 STCS 383 (441)
Q Consensus 380 sTCS 383 (441)
++..
T Consensus 186 ~~~~ 189 (297)
T 2o57_A 186 TDPM 189 (297)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7643
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=105.93 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=79.2
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|.....-...++..+++.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.++++++ +.++++++++|+.
T Consensus 32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l 106 (295)
T 3gru_A 32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL 106 (295)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence 4444445666777888999999999999999999999987 3799999999999999999988 3468999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCS 324 (441)
+++... ..||.|+.++|..
T Consensus 107 ~~~~~~---~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 107 KVDLNK---LDFNKVVANLPYQ 125 (295)
T ss_dssp TSCGGG---SCCSEEEEECCGG
T ss_pred hCCccc---CCccEEEEeCccc
Confidence 876543 4699999999964
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=99.89 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=95.8
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.-..++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...+ +++++++|+.++++.
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFSTA 112 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCCS
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCCC
Confidence 344556667777888999999999999999998762 589999999999999999987654 899999999988732
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC----
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC---- 382 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC---- 382 (441)
++||.|++.. ++..-+ +++. ...+|..+.+.++ ||.++.+|.
T Consensus 113 ----~~fD~v~~~~------~l~~~~----------------~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~ 159 (216)
T 3ofk_A 113 ----ELFDLIVVAE------VLYYLE----------------DMTQ-------MRTAIDNMVKMLAPGGHLVFGSARDAT 159 (216)
T ss_dssp ----CCEEEEEEES------CGGGSS----------------SHHH-------HHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred ----CCccEEEEcc------HHHhCC----------------CHHH-------HHHHHHHHHHHcCCCCEEEEEecCCCc
Confidence 7899999742 221111 1111 2467888888887 688887652
Q ss_pred --CCCChhcHHHHHHHhc
Q 013515 383 --SIHQVENEDVIKSVLP 398 (441)
Q Consensus 383 --S~~~~ENe~vV~~~l~ 398 (441)
.+....+.+.+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (216)
T 3ofk_A 160 CRRWGHVAGAETVITILT 177 (216)
T ss_dssp HHHTTCSCCHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHH
Confidence 2333455555656653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-09 Score=101.24 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=86.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~ 310 (441)
.+...+.+.+|.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++++++..|+ .++.+..+|+.+++
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----- 127 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----- 127 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----
Confidence 344456678899999999999999999996653 4999999999999999999998887 47999999997664
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
++||+|++.- ++..-++ .....+|..+.+.++ ||.++.++.+.
T Consensus 128 -~~fD~v~~~~------~l~~~~~------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 128 -EPVDRIVSIG------AFEHFGH------------------------ERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp -CCCSEEEEES------CGGGTCT------------------------TTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred -CCeeEEEEeC------chhhcCh------------------------HHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 5699998632 2211100 001466777777776 78888776554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-10 Score=108.78 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=69.9
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCC
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
..+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+ ++|+++.+|+.+++... ++
T Consensus 58 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~ 131 (340)
T 2fyt_A 58 QNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV---EK 131 (340)
T ss_dssp HCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC---SC
T ss_pred hhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC---Cc
Confidence 3445678999999999999999998886 346999999997 99999999999998 78999999999876443 67
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
||+|++++.
T Consensus 132 ~D~Ivs~~~ 140 (340)
T 2fyt_A 132 VDVIISEWM 140 (340)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCc
Confidence 999998863
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=108.73 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=73.8
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH-------HHhCC--CcEEEEeccC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-------KLSGA--ANIEVLHGDF 301 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~-------~~~g~--~~v~~~~~D~ 301 (441)
..+...+++.+|++|||+|||+|..++.++... +..+|+|+|+++.+++.+++++ +.+|+ .+|+++++|+
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 345567788999999999999999999998875 4467999999999999998765 44675 6899999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCC
Q 013515 302 LNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPC 323 (441)
.+++..+ .+..||+|+++++|
T Consensus 242 ~~lp~~d-~~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 242 LSEEWRE-RIANTSVIFVNNFA 262 (438)
T ss_dssp TSHHHHH-HHHTCSEEEECCTT
T ss_pred cCCcccc-ccCCccEEEEcccc
Confidence 9876421 12468999999886
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=105.66 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CCCCCCCCCccE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL--DPKDPAYSEVRA 316 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~--~~~~~~~~~fD~ 316 (441)
+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++.+..+ .++.++++|+.++ +..+ ++||.
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~---~~fD~ 131 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPD---GHFDG 131 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCT---TCEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCC---CceEE
Confidence 568899999999999999998654 22489999999999999999988877 5899999999887 4333 68999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
|++|.- +. .. ++. .. .....++..+.++|+ ||.+++..++
T Consensus 132 V~~d~~--~~-~~---~~~--------------~~-------~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 132 ILYDTY--PL-SE---ETW--------------HT-------HQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp EEECCC--CC-BG---GGT--------------TT-------HHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred EEECCc--cc-ch---hhh--------------hh-------hhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 999721 11 11 110 00 112356788888777 7888876554
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=102.40 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=75.6
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHH------HHHHHHHHHHHhCC-CcEEEE
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE------RVRRLKDTIKLSGA-ANIEVL 297 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~------rl~~l~~~~~~~g~-~~v~~~ 297 (441)
.|......+...+.+.+|.+|||+|||+|..+..++...++..+|+++|+++. +++.++++++..|+ +++++.
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~ 106 (275)
T 3bkx_A 27 RQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH 106 (275)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE
Confidence 34444556666778889999999999999999999998755579999999997 99999999998887 689999
Q ss_pred ecc-C--CCCCCCCCCCCCccEEEEcCC
Q 013515 298 HGD-F--LNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 298 ~~D-~--~~~~~~~~~~~~fD~Il~DpP 322 (441)
.+| . ..++... ++||.|++...
T Consensus 107 ~~d~~~~~~~~~~~---~~fD~v~~~~~ 131 (275)
T 3bkx_A 107 FNTNLSDDLGPIAD---QHFDRVVLAHS 131 (275)
T ss_dssp CSCCTTTCCGGGTT---CCCSEEEEESC
T ss_pred ECChhhhccCCCCC---CCEEEEEEccc
Confidence 998 3 2222222 67999997544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-09 Score=99.01 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=70.3
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNL 304 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-----~v~~~~~D~~~~ 304 (441)
...+...+...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...++. ++.++.+|+...
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 3445556666788999999999999999998763 3479999999999999999999887764 799999999665
Q ss_pred CCCCCCCCCccEEEE
Q 013515 305 DPKDPAYSEVRAILL 319 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~ 319 (441)
+... ++||.|++
T Consensus 97 ~~~~---~~fD~V~~ 108 (219)
T 3jwg_A 97 DKRF---SGYDAATV 108 (219)
T ss_dssp CGGG---TTCSEEEE
T ss_pred cccc---CCCCEEEE
Confidence 5332 68999995
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-09 Score=103.90 Aligned_cols=96 Identities=25% Similarity=0.300 Sum_probs=81.2
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~ 301 (441)
|..++.....++..+++.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++...|. ++++++++|+
T Consensus 10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~ 86 (285)
T 1zq9_A 10 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 86 (285)
T ss_dssp EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence 3445556667777888889999999999999999999987 26899999999999999999987776 6899999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCC
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGS 326 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~ 326 (441)
.+++. ..||.|++++|+..+
T Consensus 87 ~~~~~-----~~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 87 LKTDL-----PFFDTCVANLPYQIS 106 (285)
T ss_dssp TTSCC-----CCCSEEEEECCGGGH
T ss_pred ecccc-----hhhcEEEEecCcccc
Confidence 87653 368999999998653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=101.28 Aligned_cols=117 Identities=10% Similarity=0.099 Sum_probs=88.1
Q ss_pred HHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
.+..++. ..++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...+ ++.++++|+.+++..
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~--- 107 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE--- 107 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---
Confidence 3334444 5678999999999999999999885 35799999999999999999987665 899999999987754
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
++||+|++.... ..+ ... ....+|..+.+.++ ||.++.++.+..
T Consensus 108 -~~fD~v~~~~~l---~~~--------------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 108 -EKYDMVVSALSI---HHL--------------------EDE-------DKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp -SCEEEEEEESCG---GGS--------------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred -CCceEEEEeCcc---ccC--------------------CHH-------HHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 679999976431 111 011 11357888888777 788888776543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-09 Score=96.11 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=82.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++ +|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...|. ++.+.++|+.+++... ++||.|+
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~---~~fD~v~ 99 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVA---DAWEGIV 99 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCT---TTCSEEE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCc---CCccEEE
Confidence 3567 9999999999999988875 35999999999999999999999887 7999999998876433 6799999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
+.. ..+ ..+ ....+|..+.+.++ ||.++.++.+.
T Consensus 100 ~~~-----~~~--------------------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 100 SIF-----CHL--------------------PSS-------LRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp EEC-----CCC--------------------CHH-------HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred EEh-----hcC--------------------CHH-------HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 631 111 011 13567888888887 68888776543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=102.07 Aligned_cols=82 Identities=24% Similarity=0.348 Sum_probs=71.6
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.....++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...|+.++.++.+|+..++... ++||
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD 107 (276)
T 3mgg_A 32 DTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED---SSFD 107 (276)
T ss_dssp TCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT---TCEE
T ss_pred cccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC---CCee
Confidence 3445789999999999999999999884 45799999999999999999999999989999999999877543 6899
Q ss_pred EEEEcC
Q 013515 316 AILLDP 321 (441)
Q Consensus 316 ~Il~Dp 321 (441)
.|++..
T Consensus 108 ~v~~~~ 113 (276)
T 3mgg_A 108 HIFVCF 113 (276)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 999744
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=99.76 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..+ .++.++++|+.+++... ++||.|++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~---~~~D~v~~ 109 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFED---KTFDYVIF 109 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCT---TCEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCC---CcEEEEEE
Confidence 458899999999999999988763 389999999999999999999887 68999999998866332 68999998
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.++.. .. ...+ ...+|..+.+.++ ||.++.+++.
T Consensus 110 ~~~~~---~~--------------------~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIV---HF--------------------EPLE-------LNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGG---GC--------------------CHHH-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchH---hC--------------------CHHH-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 86611 00 0111 2467788877777 7888877664
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.3e-10 Score=100.98 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=90.6
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh------------CCCcEEEEeccCCC
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------------GAANIEVLHGDFLN 303 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~------------g~~~v~~~~~D~~~ 303 (441)
.+.+.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++.... +..+++++++|+.+
T Consensus 17 ~l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 17 SLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred hcccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 345678999999999999999999986 259999999999999998876431 23578999999998
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++..+ .++||.|+.-. ++.. ...+ .....+....+.++ ||++++.|+
T Consensus 94 l~~~~--~~~fD~v~~~~------~l~~-----------------l~~~-------~~~~~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 94 LTARD--IGHCAAFYDRA------AMIA-----------------LPAD-------MRERYVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp STHHH--HHSEEEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCccc--CCCEEEEEECc------chhh-----------------CCHH-------HHHHHHHHHHHHcCCCcEEEEEEE
Confidence 87432 15799998522 1210 0111 12356777778777 677666665
Q ss_pred CCCCh--------hcHHHHHHHhchhcCCCeEEe
Q 013515 383 SIHQV--------ENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 383 S~~~~--------ENe~vV~~~l~~~~~~~~~~~ 408 (441)
..... -+++.+...++ . +|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~el~~~~~---~-gf~i~ 171 (203)
T 1pjz_A 142 EYDQALLEGPPFSVPQTWLHRVMS---G-NWEVT 171 (203)
T ss_dssp SSCSSSSSSCCCCCCHHHHHHTSC---S-SEEEE
T ss_pred ecCccccCCCCCCCCHHHHHHHhc---C-CcEEE
Confidence 54321 13455555552 3 77764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=107.87 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-----C-C--CcEEEEeccCCCC------
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-----G-A--ANIEVLHGDFLNL------ 304 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-----g-~--~~v~~~~~D~~~~------ 304 (441)
+.+|.+|||+|||+|..+..++...++.++|+++|+++.+++.++++++.+ | . .++.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 567899999999999999999998766689999999999999999998876 4 3 5899999999886
Q ss_pred CCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+..+ ++||+|+++.. +..-+| + ..+|..+.++|+ ||.++.++
T Consensus 161 ~~~~---~~fD~V~~~~~------l~~~~d----------------~----------~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPD---SSVDIVISNCV------CNLSTN----------------K----------LALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCT---TCEEEEEEESC------GGGCSC----------------H----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC---CCEEEEEEccc------hhcCCC----------------H----------HHHHHHHHHHcCCCCEEEEEE
Confidence 3332 68999997643 211111 1 367888888877 68877764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=107.24 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=87.7
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~ 312 (441)
...+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+ ++|+++.+|+.+++.. +
T Consensus 43 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~----~ 115 (348)
T 2y1w_A 43 LQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----E 115 (348)
T ss_dssp HHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----S
T ss_pred HhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC----C
Confidence 33455668999999999999999988875 446999999996 88999999999998 6899999999887533 5
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
+||+|+++++....+ +++ ....+..+.++|+ +|.++.+++++.
T Consensus 116 ~~D~Ivs~~~~~~~~----~~~--------------------------~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (348)
T 2y1w_A 116 QVDIIISEPMGYMLF----NER--------------------------MLESYLHAKKYLKPSGNMFPTIGDVH 159 (348)
T ss_dssp CEEEEEECCCBTTBT----TTS--------------------------HHHHHHHGGGGEEEEEEEESCEEEEE
T ss_pred ceeEEEEeCchhcCC----hHH--------------------------HHHHHHHHHhhcCCCeEEEEecCcEE
Confidence 799999987733211 000 1245666777777 688887777654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.5e-10 Score=102.79 Aligned_cols=110 Identities=9% Similarity=-0.016 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCC-HHHHHHH---HHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-KERVRRL---KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~-~~rl~~l---~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.++++|||+|||+|..+..++... +...|+|+|++ +.+++.+ ++++++.|+.|+.++++|+..++... +..+|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~--~d~v~ 99 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL--KNIAD 99 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG--TTCEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhc--cCeEE
Confidence 678999999999999999998753 45799999999 6666665 88888889989999999999885322 25688
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY 379 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY 379 (441)
.|.+..|-. .........+..+|..+.+.|+ ||.++.
T Consensus 100 ~i~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 100 SISILFPWG---------------------------TLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEESCCH---------------------------HHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEeCCCc---------------------------HHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 888877721 1111111122467888888888 677666
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-09 Score=98.62 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=87.8
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
.|......+...+.+.++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.++++ ..++.++.+|+.++
T Consensus 17 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~ 90 (259)
T 2p35_A 17 ERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATW 90 (259)
T ss_dssp GGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhc
Confidence 3444445555566677899999999999999999998863 47999999999999999887 35788999999887
Q ss_pred CCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+ .. ++||.|++... ...+ +| ...+|..+.+.++ ||.++.++..
T Consensus 91 ~-~~---~~fD~v~~~~~---l~~~---~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 91 K-PA---QKADLLYANAV---FQWV---PD--------------------------HLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp C-CS---SCEEEEEEESC---GGGS---TT--------------------------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred C-cc---CCcCEEEEeCc---hhhC---CC--------------------------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 6 32 68999997432 1111 11 1367888888887 6888887643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=102.77 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=89.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 310 (441)
.+...+.+.+|.+|||+|||+|..+..+++.. + .+|+++|+++.+++.++++++..|+. ++.++.+|+.+++
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 153 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-D-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----- 153 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----
Confidence 44445667889999999999999999999876 2 59999999999999999999998874 6999999998764
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ 386 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~ 386 (441)
++||+|++... +..-+ . .....+|..+.+.++ ||.++.++.+...
T Consensus 154 -~~fD~v~~~~~------l~~~~-----------------~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 154 -EPVDRIVSIEA------FEHFG-----------------H-------ENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp -CCCSEEEEESC------GGGTC-----------------G-------GGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred -CCcCEEEEeCh------HHhcC-----------------H-------HHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 56999996532 21100 0 012466777777776 7888887776544
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-09 Score=102.08 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=70.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...|+ ++.++++|+.+.+. . +
T Consensus 112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~---~ 183 (286)
T 3m70_A 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-Q---E 183 (286)
T ss_dssp HHHHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC-C---S
T ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc-c---C
Confidence 334444558999999999999999999886 35999999999999999999999998 89999999988765 2 7
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
+||.|++..+
T Consensus 184 ~fD~i~~~~~ 193 (286)
T 3m70_A 184 NYDFIVSTVV 193 (286)
T ss_dssp CEEEEEECSS
T ss_pred CccEEEEccc
Confidence 8999998765
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=101.27 Aligned_cols=122 Identities=14% Similarity=0.187 Sum_probs=90.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++.+|||+|||+|..+..++.+ + . +|+++|+++.+++.+++|++.+|+. +.+.++|+....+ .++||.|+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g-~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~----~~~fD~Vv 189 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-G-G-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP----FGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T-C-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG----GCCEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-C-C-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc----CCCCCEEE
Confidence 467899999999999999988875 2 2 9999999999999999999999987 8899999876321 15799999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHh
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
++++.. . ...++..+.++++ ||.++.+... .+....+...+
T Consensus 190 ~n~~~~----------------------------~-------~~~~l~~~~~~LkpgG~lils~~~---~~~~~~v~~~l 231 (254)
T 2nxc_A 190 ANLYAE----------------------------L-------HAALAPRYREALVPGGRALLTGIL---KDRAPLVREAM 231 (254)
T ss_dssp EECCHH----------------------------H-------HHHHHHHHHHHEEEEEEEEEEEEE---GGGHHHHHHHH
T ss_pred ECCcHH----------------------------H-------HHHHHHHHHHHcCCCCEEEEEeec---cCCHHHHHHHH
Confidence 876520 0 1356777777776 6888776443 23455565665
Q ss_pred chhcCCCeEEec
Q 013515 398 PIAMSFGFQLAT 409 (441)
Q Consensus 398 ~~~~~~~~~~~~ 409 (441)
+ ..+|++..
T Consensus 232 ~---~~Gf~~~~ 240 (254)
T 2nxc_A 232 A---GAGFRPLE 240 (254)
T ss_dssp H---HTTCEEEE
T ss_pred H---HCCCEEEE
Confidence 3 35787754
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.6e-10 Score=101.20 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=81.7
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHH----HHHhCCCcEEEEeccCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT----IKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~----~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
...+.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.+.++ ....+++++.++++|+.+++...
T Consensus 20 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~- 97 (218)
T 3mq2_A 20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS- 97 (218)
T ss_dssp HHHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC-
T ss_pred HHHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC-
Confidence 344557889999999999999999999974 458999999999988864433 33467789999999999977543
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
+. |.|.+..|... .......-+..+|..+.+.++ ||.++.+
T Consensus 98 --~~-d~v~~~~~~~~---------------------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 98 --GV-GELHVLMPWGS---------------------------LLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp --CE-EEEEEESCCHH---------------------------HHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred --CC-CEEEEEccchh---------------------------hhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 34 77775554211 000111112467888888888 6776664
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=107.41 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..++.+|||+|||+|..+..+++. +..+|+|+|++ ++++.++++++..|+.+ |+++++|+.+++... ++||+|
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~I 137 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDII 137 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC---CceEEE
Confidence 457899999999999999999886 45799999999 59999999999999855 999999999886443 689999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
++++....... .++ ...+|..+.++|+ ||.++.+.+++.
T Consensus 138 is~~~~~~l~~---~~~--------------------------~~~~l~~~~r~LkpgG~li~~~~~~~ 177 (349)
T 3q7e_A 138 ISEWMGYCLFY---ESM--------------------------LNTVLHARDKWLAPDGLIFPDRATLY 177 (349)
T ss_dssp EECCCBBTBTB---TCC--------------------------HHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred EEccccccccC---chh--------------------------HHHHHHHHHHhCCCCCEEccccceEE
Confidence 99875332210 000 1356666667777 788887776654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-09 Score=95.71 Aligned_cols=120 Identities=10% Similarity=-0.002 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++++.. ..++.++++|+.+++... ++||+|++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~---~~fD~v~~ 113 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPS---ASFDVVLE 113 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCS---SCEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCC---CcccEEEE
Confidence 67899999999999999999886 22 3899999999999999998764 357899999998875433 67999998
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+++....-. .+++. | . ... ........+|..+.+.++ ||.++.++.+
T Consensus 114 ~~~~~~~~~--~~~~~-~---------~-~~~----~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 114 KGTLDALLA--GERDP-W---------T-VSS----EGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp ESHHHHHTT--TCSCT-T---------S-CCH----HHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred Ccchhhhcc--ccccc-c---------c-ccc----chhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 776422110 01110 1 0 011 122334677888888777 7888888776
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=105.99 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=69.1
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+ ++|+++.+|+.+++... ++||
T Consensus 34 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D 107 (328)
T 1g6q_1 34 KDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVD 107 (328)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEE
T ss_pred HhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC---Cccc
Confidence 34457899999999999999988875 34699999999 599999999999998 46999999999876432 6799
Q ss_pred EEEEcCCCC
Q 013515 316 AILLDPSCS 324 (441)
Q Consensus 316 ~Il~DpPCS 324 (441)
+|+++++..
T Consensus 108 ~Ivs~~~~~ 116 (328)
T 1g6q_1 108 IIISEWMGY 116 (328)
T ss_dssp EEEECCCBT
T ss_pred EEEEeCchh
Confidence 999998743
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=106.03 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.++.+|||+|||+|..+..++....+..+|+++|+++.+++.+++++...|+. +++++++|+.+++.. ++||.
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~ 190 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR----EGYDL 190 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC----SCEEE
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc----CCeEE
Confidence 3578999999999999999988633345679999999999999999999998885 499999999987643 67999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
|++..+. -.-|| ++ .+..+|..+.+.++ ||.++.++.+
T Consensus 191 v~~~~~~------~~~~~----------------~~-------~~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 191 LTSNGLN------IYEPD----------------DA-------RVTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp EECCSSG------GGCCC----------------HH-------HHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEECChh------hhcCC----------------HH-------HHHHHHHHHHHhcCCCeEEEEEecC
Confidence 9965432 11111 11 12457888888777 7888877643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=101.44 Aligned_cols=115 Identities=11% Similarity=0.126 Sum_probs=86.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.+...+.+.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... .++.++++|+.+++..+
T Consensus 46 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~--- 118 (266)
T 3ujc_A 46 KILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPE--- 118 (266)
T ss_dssp HHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCT---
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCC---
Confidence 33444567789999999999999999999876 369999999999999999887654 68999999999876543
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
++||+|++... +.. .... ....+|..+.+.++ ||.++.++.+
T Consensus 119 ~~fD~v~~~~~------l~~-----------------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 119 NNFDLIYSRDA------ILA-----------------LSLE-------NKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp TCEEEEEEESC------GGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CcEEEEeHHHH------HHh-----------------cChH-------HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 68999996422 111 0011 12467788878777 6888777643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.3e-09 Score=97.44 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=62.3
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH-----------------hCCCcEEEEec
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL-----------------SGAANIEVLHG 299 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~-----------------~g~~~v~~~~~ 299 (441)
+.+.++.+|||+|||+|..+..|++. ...|+|+|+|+.+++.++++... ....+|.++++
T Consensus 64 ~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 140 (252)
T 2gb4_A 64 LKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC 140 (252)
T ss_dssp HTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred ccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence 34567899999999999999999986 25899999999999999766431 01257999999
Q ss_pred cCCCCCCCCCCCCCccEEEE
Q 013515 300 DFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~ 319 (441)
|+.+++..+ .++||+|+.
T Consensus 141 D~~~l~~~~--~~~FD~V~~ 158 (252)
T 2gb4_A 141 SIFDLPRAN--IGKFDRIWD 158 (252)
T ss_dssp CTTTGGGGC--CCCEEEEEE
T ss_pred ccccCCccc--CCCEEEEEE
Confidence 999887542 168999985
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=103.09 Aligned_cols=89 Identities=21% Similarity=0.160 Sum_probs=69.5
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHH-------HHHHHHhC--CCcEEEEeccCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL-------KDTIKLSG--AANIEVLHGDFLN 303 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l-------~~~~~~~g--~~~v~~~~~D~~~ 303 (441)
+...+++.+|++|||+|||+|..+..++...+ ..+|+|+|+++.+++.+ +++++.+| +.+|+++++|...
T Consensus 234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~ 312 (433)
T 1u2z_A 234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 312 (433)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence 44567788999999999999999999999764 46899999999998888 99999999 5799999886543
Q ss_pred CCCCC-CCCCCccEEEEcCC
Q 013515 304 LDPKD-PAYSEVRAILLDPS 322 (441)
Q Consensus 304 ~~~~~-~~~~~fD~Il~DpP 322 (441)
..... .....||+|+++..
T Consensus 313 ~~~~~~~~~~~FDvIvvn~~ 332 (433)
T 1u2z_A 313 DNNRVAELIPQCDVILVNNF 332 (433)
T ss_dssp TCHHHHHHGGGCSEEEECCT
T ss_pred cccccccccCCCCEEEEeCc
Confidence 21000 00157999998644
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-09 Score=107.06 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeC----CHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL----NKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSE 313 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~----~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~ 313 (441)
+++|.+|||+|||||+.|..+++. ++|+++|+ ++.+++.+ ..+..|.++|.++.+ |+..++. .+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~~-----~~ 148 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIPP-----ER 148 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSCC-----CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCCc-----CC
Confidence 467899999999999999999876 57999999 55443211 112233467999999 8887642 57
Q ss_pred ccEEEEcCCCCCCcc
Q 013515 314 VRAILLDPSCSGSGT 328 (441)
Q Consensus 314 fD~Il~DpPCSg~G~ 328 (441)
||+|++|.+|+ +|.
T Consensus 149 fD~V~sd~~~~-~g~ 162 (305)
T 2p41_A 149 CDTLLCDIGES-SPN 162 (305)
T ss_dssp CSEEEECCCCC-CSS
T ss_pred CCEEEECCccc-cCc
Confidence 99999999997 663
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=107.56 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=86.3
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCcc
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+...+|.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+. +|+++++|+.++... ++||
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D 131 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP----EKVD 131 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS----SCEE
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC----Ccce
Confidence 45568999999999999999999886 34599999999 9999999999999985 499999999887643 6799
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
+|++++...... +.+ ....++..+.++|+ ||.++.+.+++.
T Consensus 132 ~Iv~~~~~~~l~----~e~-------------------------~~~~~l~~~~~~LkpgG~li~~~~~~~ 173 (376)
T 3r0q_C 132 VIISEWMGYFLL----RES-------------------------MFDSVISARDRWLKPTGVMYPSHARMW 173 (376)
T ss_dssp EEEECCCBTTBT----TTC-------------------------THHHHHHHHHHHEEEEEEEESSEEEEE
T ss_pred EEEEcChhhccc----chH-------------------------HHHHHHHHHHhhCCCCeEEEEecCeEE
Confidence 999987422211 000 01346666667777 788887777643
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.1e-09 Score=110.91 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=89.9
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEeccCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GAANIEVLHGDFLNLD 305 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~------g~~~v~~~~~D~~~~~ 305 (441)
.+...+...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.+++++... |..+|+++++|+.+++
T Consensus 712 ~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 712 YALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 3455566668999999999999999999887434469999999999999999987753 6678999999999987
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
..+ +.||+|++ .+++..-+ . .....++..+.+.+++|.++.+|..
T Consensus 792 ~~d---~sFDlVV~------~eVLeHL~-----------------d-------p~l~~~L~eI~RvLKPG~LIISTPN 836 (950)
T 3htx_A 792 SRL---HDVDIGTC------LEVIEHME-----------------E-------DQACEFGEKVLSLFHPKLLIVSTPN 836 (950)
T ss_dssp TTS---CSCCEEEE------ESCGGGSC-----------------H-------HHHHHHHHHHHHTTCCSEEEEEECB
T ss_pred ccc---CCeeEEEE------eCchhhCC-----------------h-------HHHHHHHHHHHHHcCCCEEEEEecC
Confidence 654 68999997 23332111 1 1123577888888887777777653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-09 Score=100.48 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=68.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeccCCCCCCCC---CCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GAANIEVLHGDFLNLDPKD---PAYSE 313 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g~~~v~~~~~D~~~~~~~~---~~~~~ 313 (441)
..++.+|||+|||+|..+..++..+.+..+|+++|+++.+++.++++++.. +..++.++++|+.+++... ...++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 357999999999999999999987645689999999999999999999987 3468999999999876432 00157
Q ss_pred ccEEEEc
Q 013515 314 VRAILLD 320 (441)
Q Consensus 314 fD~Il~D 320 (441)
||.|++.
T Consensus 114 fD~V~~~ 120 (299)
T 3g5t_A 114 IDMITAV 120 (299)
T ss_dssp EEEEEEE
T ss_pred eeEEeHh
Confidence 9999974
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.2e-09 Score=94.72 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=83.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+...+....++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++ .|..++.++++|+.++ ...
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~~--- 105 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TPD--- 105 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CCS---
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CCC---
Confidence 3333334678889999999999999999987 3699999999999999987 6777899999999887 222
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
++||+|++.- ++..- .. .....+|..+.+.++ ||.++.++.+.
T Consensus 106 ~~~D~v~~~~------~l~~~-----------------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 106 RQWDAVFFAH------WLAHV-----------------PD-------DRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp SCEEEEEEES------CGGGS-----------------CH-------HHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CceeEEEEec------hhhcC-----------------CH-------HHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 7899999742 22110 01 112467888888777 78888887654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.1e-09 Score=99.90 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..|+ .++.++++|+.+++... .++||+|++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v~~ 142 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL--ETPVDLILF 142 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC--SSCEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc--CCCceEEEE
Confidence 3789999999999999999886 36999999999999999999999998 68999999999876322 168999997
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
... +..-+| + ..+|..+.++++ ||.++.++.
T Consensus 143 ~~~------l~~~~~----------------~----------~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 143 HAV------LEWVAD----------------P----------RSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp ESC------GGGCSC----------------H----------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred Cch------hhcccC----------------H----------HHHHHHHHHHcCCCeEEEEEEe
Confidence 532 211111 1 357888888887 688877654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=102.11 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=74.0
Q ss_pred hhhHHHHHHhCCCCC--CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-------C-C-CcEEE
Q 013515 228 KASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-------G-A-ANIEV 296 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-------g-~-~~v~~ 296 (441)
.....+..++++.+| .+|||+|||.|..++.++.. .++|+++|+++..++.+++++++. | + .++++
T Consensus 73 ~~~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~ 149 (258)
T 2oyr_A 73 GRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (258)
T ss_dssp GGGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEE
T ss_pred chHHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEE
Confidence 344566677777778 99999999999999999987 257999999999988888887654 2 3 57999
Q ss_pred EeccCCCCCCCCCCCCCccEEEEcCCCC
Q 013515 297 LHGDFLNLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 297 ~~~D~~~~~~~~~~~~~fD~Il~DpPCS 324 (441)
+++|+.++....+ .+||+|++|||..
T Consensus 150 ~~~D~~~~L~~~~--~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 150 IHASSLTALTDIT--PRPQVVYLDPMFP 175 (258)
T ss_dssp EESCHHHHSTTCS--SCCSEEEECCCCC
T ss_pred EECCHHHHHHhCc--ccCCEEEEcCCCC
Confidence 9999988654332 4699999999963
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.1e-09 Score=99.57 Aligned_cols=113 Identities=14% Similarity=0.036 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++...|. .++.++++|+.+.+... .++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v 137 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVI 137 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC--CCCcCEE
Confidence 367899999999999999998876 346999999999999999999998877 57999999999876421 2689999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
++.-. +..- + ...+ ....+|..+.+.++ ||.++.++++
T Consensus 138 ~~~~~------l~~~----~-----------~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 138 SSQFS------FHYA----F-----------STSE-------SLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEESC------GGGG----G-----------SSHH-------HHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EECch------hhhh----c-----------CCHH-------HHHHHHHHHHHhcCCCCEEEEEECC
Confidence 97632 1000 0 0011 23567888888887 7888888765
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=104.53 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=86.5
Q ss_pred hcCcccccchhhHHHHHHhC----CCCCCEEEEEcCCCchHHHHHHHHhc--CCcEEEEEeCCHHHHHHHHHHHHHhCC-
Q 013515 219 VNGCVFLQGKASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGA- 291 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~----~~~g~~VLDl~ag~G~kt~~la~~~~--~~~~V~a~D~~~~rl~~l~~~~~~~g~- 291 (441)
..|.|+=-..-+.+++.++. +.++.+|+|.|||+|++.+.++..+. +...++|+|+++..+..++.|+...|+
T Consensus 195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 274 (542)
T 3lkd_A 195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP 274 (542)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence 35666555566777777777 67899999999999999999888863 246899999999999999999999998
Q ss_pred -CcEEEEeccCCCCC--CCCCCCCCccEEEEcCCCCCC
Q 013515 292 -ANIEVLHGDFLNLD--PKDPAYSEVRAILLDPSCSGS 326 (441)
Q Consensus 292 -~~v~~~~~D~~~~~--~~~~~~~~fD~Il~DpPCSg~ 326 (441)
.++.+.++|....+ ... ..+||+|+.+||.++.
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~--~~~fD~IvaNPPf~~~ 310 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQE--PTNFDGVLMNPPYSAK 310 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSS--CCCBSEEEECCCTTCC
T ss_pred cCccceEecceecccccccc--cccccEEEecCCcCCc
Confidence 57899999988763 211 2689999999999854
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-10 Score=106.77 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=72.8
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCH-------HHHHHHHHHHHHhCCCc-EEEEeccC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNK-------ERVRRLKDTIKLSGAAN-IEVLHGDF 301 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~-------~rl~~l~~~~~~~g~~~-v~~~~~D~ 301 (441)
..++...+.+.+|++|||+|||+|..++.++.. .++|+++|+++ .+++.+++|++.+|+.+ |+++++|+
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~ 148 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA 148 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence 445555666677899999999999999999985 36899999999 99999999999888755 99999999
Q ss_pred CCCCCCCCC-CCCccEEEEcCCCC
Q 013515 302 LNLDPKDPA-YSEVRAILLDPSCS 324 (441)
Q Consensus 302 ~~~~~~~~~-~~~fD~Il~DpPCS 324 (441)
.++....+. ..+||+|++|||..
T Consensus 149 ~~~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 149 AEQMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHHHhhhccCCCccEEEECCCCC
Confidence 875321100 04699999999853
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.9e-09 Score=95.46 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=90.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+|||+|||+|..+..++. ...+|+++|+++.+++.+++++...+. .++.++++|+.++++. .+||+|++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~v~~~ 139 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT----ELFDLIFDY 139 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS----SCEEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC----CCeeEEEEC
Confidence 45999999999999998865 347899999999999999999887543 5799999999987643 589999964
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh-------hcHHH
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV-------ENEDV 392 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~-------ENe~v 392 (441)
... ..+ + ++ ....+|..+.++++ ||.++..+.+.... -..+.
T Consensus 140 ~~l---~~~---~-----------------~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 189 (235)
T 3lcc_A 140 VFF---CAI---E-----------------PE-------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVST 189 (235)
T ss_dssp SST---TTS---C-----------------GG-------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHH
T ss_pred hhh---hcC---C-----------------HH-------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHH
Confidence 321 111 0 00 11366777777777 68777665544322 24566
Q ss_pred HHHHhchhcCCCeEEec
Q 013515 393 IKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 393 V~~~l~~~~~~~~~~~~ 409 (441)
+...++ ..+|+++.
T Consensus 190 ~~~~l~---~~Gf~~~~ 203 (235)
T 3lcc_A 190 FEEVLV---PIGFKAVS 203 (235)
T ss_dssp HHHHHG---GGTEEEEE
T ss_pred HHHHHH---HcCCeEEE
Confidence 777774 35787654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-09 Score=97.86 Aligned_cols=109 Identities=10% Similarity=0.017 Sum_probs=82.1
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
...+...++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++. ..++.++++|+.+++... ++
T Consensus 37 ~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~---~~ 108 (253)
T 3g5l_A 37 KKMLPDFNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEP---DA 108 (253)
T ss_dssp HTTCCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCT---TC
T ss_pred HHhhhccCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCC---CC
Confidence 345556689999999999999999998862 2499999999999999988865 457999999998877543 68
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
||+|++.-. +..-+| ...+|..+.+.++ ||.++.++.
T Consensus 109 fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 109 YNVVLSSLA------LHYIAS--------------------------FDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEEESC------GGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEchh------hhhhhh--------------------------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 999997432 211011 1367788888777 788887643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=89.15 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=94.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++ .++.++++|+.+++... ++||.|+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~---~~~D~i~ 112 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISE---TDFDLIV 112 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCC---CCEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCC---CceeEEE
Confidence 457899999999999999999886 369999999999999998875 35788999998875432 6799999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHh
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
+++++-. .+ ..++ ...+|..+.+.++ +|.++.++.+.. .-....+...+
T Consensus 113 ~~~~~~~--~~--------------------~~~~-------~~~~l~~~~~~l~~~G~l~~~~~~~~-~~~~~~~~~~l 162 (195)
T 3cgg_A 113 SAGNVMG--FL--------------------AEDG-------REPALANIHRALGADGRAVIGFGAGR-GWVFGDFLEVA 162 (195)
T ss_dssp ECCCCGG--GS--------------------CHHH-------HHHHHHHHHHHEEEEEEEEEEEETTS-SCCHHHHHHHH
T ss_pred ECCcHHh--hc--------------------ChHH-------HHHHHHHHHHHhCCCCEEEEEeCCCC-CcCHHHHHHHH
Confidence 9866421 00 1111 2467777777777 677777654432 23444555555
Q ss_pred chhcCCCeEEecCCCCCCCc
Q 013515 398 PIAMSFGFQLATPFPNGTAE 417 (441)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~ 417 (441)
+ ..+|++......|...
T Consensus 163 ~---~~Gf~~~~~~~~~~~~ 179 (195)
T 3cgg_A 163 E---RVGLELENAFESWDLK 179 (195)
T ss_dssp H---HHTEEEEEEESSTTCC
T ss_pred H---HcCCEEeeeecccccC
Confidence 4 3478887665555543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.86 E-value=6e-09 Score=98.92 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=74.3
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.-...++..+++.+|++|||+|||+|..|..+++. .++|+|+|+|+.+++.+++++.. ..+++++++|+.+++..
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHH
Confidence 34566777888999999999999999999999876 26999999999999999999875 46899999999988743
Q ss_pred CC-CCCCccEEEEcCCC
Q 013515 308 DP-AYSEVRAILLDPSC 323 (441)
Q Consensus 308 ~~-~~~~fD~Il~DpPC 323 (441)
.. ...+|| |+.++|.
T Consensus 91 ~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp GSCCSSCEE-EEEECCH
T ss_pred HhccCCCeE-EEecCCc
Confidence 21 014677 9999996
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.7e-09 Score=94.07 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=81.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..++.. ...+|+++|+++.+++.++++++..+ .++.++++|+.+++... ++||.|
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~---~~fD~v 93 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKD---ESMSFV 93 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCT---TCEEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCC---CceeEE
Confidence 3467899999999999986555443 23699999999999999999998877 46889999998876433 679999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
++... +.. ...++ ...+|..+.+.++ ||.++.++++.
T Consensus 94 ~~~~~------l~~-----------------~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 94 YSYGT------IFH-----------------MRKND-------VKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp EECSC------GGG-----------------SCHHH-------HHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEcCh------HHh-----------------CCHHH-------HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 96422 110 01111 2466777777777 78888887764
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=96.43 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++ ..+..++.++++|+.+++..+ ++||.|
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~---~~fD~v 108 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPD---ESVHGV 108 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCT---TCEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCC---CCeeEE
Confidence 5678999999999999999999875 369999999999999999988 444578999999998876443 679999
Q ss_pred EEc
Q 013515 318 LLD 320 (441)
Q Consensus 318 l~D 320 (441)
++.
T Consensus 109 ~~~ 111 (263)
T 2yqz_A 109 IVV 111 (263)
T ss_dssp EEE
T ss_pred EEC
Confidence 974
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-09 Score=103.79 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--C---------CCcEEEEeccCCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---------AANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g---------~~~v~~~~~D~~~~~~~~ 308 (441)
..+.+|||+|||+|+.+..+++. +..+|+++|+++.+++.+++++ .. + -++++++.+|+.+.....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~ 150 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 150 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhccc
Confidence 45789999999999999999886 4579999999999999999998 44 3 357999999987643221
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
++||+|++|+|+. .|. +.. + .+.+++..+.+.|+ ||.++..+++.
T Consensus 151 ---~~fD~Ii~d~~~~-~~~----~~~---------------------l--~~~~~l~~~~~~L~pgG~lv~~~~~~ 196 (281)
T 1mjf_A 151 ---RGFDVIIADSTDP-VGP----AKV---------------------L--FSEEFYRYVYDALNNPGIYVTQAGSV 196 (281)
T ss_dssp ---CCEEEEEEECCCC-C------------------------------T--TSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ---CCeeEEEECCCCC-CCc----chh---------------------h--hHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 6799999999963 121 000 0 12466777777777 78888876664
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=93.80 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=81.1
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.+.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++. .++.++++|+.+++.. ++||
T Consensus 40 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~----~~fD 108 (220)
T 3hnr_A 40 DVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP----TSID 108 (220)
T ss_dssp HHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC----SCCS
T ss_pred HhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC----CCeE
Confidence 344568999999999999999999886 3699999999999999988765 4788999999987643 6799
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
.|++... +..-+ .++ +..+|..+.+.++ ||.++.++....
T Consensus 109 ~v~~~~~------l~~~~----------------~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 109 TIVSTYA------FHHLT----------------DDE--------KNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp EEEEESC------GGGSC----------------HHH--------HHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred EEEECcc------hhcCC----------------hHH--------HHHHHHHHHHhcCCCCEEEEEecccc
Confidence 9997532 21100 011 1357777777776 788887764443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=92.22 Aligned_cols=133 Identities=20% Similarity=0.085 Sum_probs=92.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
++..++.. .+.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++ ..++.++++|+.+++..+
T Consensus 33 ~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~--- 100 (203)
T 3h2b_A 33 LIEPWATG-VDGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDSP--- 100 (203)
T ss_dssp HHHHHHHH-CCSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGSC---
T ss_pred HHHHHhcc-CCCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccCC---
Confidence 33444432 2889999999999999999886 35899999999999999887 347889999998876443
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC----
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ---- 386 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~---- 386 (441)
++||+|++... +..-+ .+ ....+|..+.+.++ ||.++.++.....
T Consensus 101 ~~fD~v~~~~~------l~~~~-----------------~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 150 (203)
T 3h2b_A 101 KRWAGLLAWYS------LIHMG-----------------PG-------ELPDALVALRMAVEDGGGLLMSFFSGPSLEPM 150 (203)
T ss_dssp CCEEEEEEESS------STTCC-----------------TT-------THHHHHHHHHHTEEEEEEEEEEEECCSSCEEE
T ss_pred CCeEEEEehhh------HhcCC-----------------HH-------HHHHHHHHHHHHcCCCcEEEEEEccCCchhhh
Confidence 68999997432 21100 00 01467888888887 6888877654332
Q ss_pred --------hhcHHHHHHHhchhcCCCeEEec
Q 013515 387 --------VENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 387 --------~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.-..+.+...|+ ..||+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~l~---~~Gf~~~~ 178 (203)
T 3h2b_A 151 YHPVATAYRWPLPELAQALE---TAGFQVTS 178 (203)
T ss_dssp CCSSSCEEECCHHHHHHHHH---HTTEEEEE
T ss_pred hchhhhhccCCHHHHHHHHH---HCCCcEEE
Confidence 123555666664 35788755
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=95.30 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEeccCCCCCCCCCCCCCc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-----ANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-----~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...++ .++.++.+|+..++... ++|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~ 102 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD---SSF 102 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT---TCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC---Cce
Confidence 47899999999999999999886 36999999999999999999988776 36899999999876443 689
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
|.|++... +..-+ +++. ...+|..+.+.++ ||.++.++...
T Consensus 103 D~v~~~~~------l~~~~----------------~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 103 DFAVMQAF------LTSVP----------------DPKE-------RSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EEEEEESC------GGGCC----------------CHHH-------HHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eEEEEcch------hhcCC----------------CHHH-------HHHHHHHHHHHcCCCeEEEEEECCc
Confidence 99997533 21111 1111 1357777777777 78888776543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-09 Score=100.36 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeC-CHHHHHHHHHHH-----HHhCCC-----cEEEEeccCCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL-NKERVRRLKDTI-----KLSGAA-----NIEVLHGDFLNLDPK 307 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~-~~~rl~~l~~~~-----~~~g~~-----~v~~~~~D~~~~~~~ 307 (441)
..+|.+|||+|||+|..+..++.. +.++|+++|+ ++.+++.+++|+ +..|+. ++.+...|..+....
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 357889999999999999988875 3459999999 899999999999 666654 677876665442210
Q ss_pred CC---CCCCccEEEE-cCC
Q 013515 308 DP---AYSEVRAILL-DPS 322 (441)
Q Consensus 308 ~~---~~~~fD~Il~-DpP 322 (441)
.. ...+||+|++ |+.
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl 173 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLL 173 (281)
T ss_dssp HHHHHSCSSBSEEEEESCC
T ss_pred HHhhccCCCCCEEEEeCcc
Confidence 00 0167999986 655
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-08 Score=108.38 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=82.8
Q ss_pred CChhhhcCcccccch------hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhc-----------------------
Q 013515 214 VHPLIVNGCVFLQGK------ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----------------------- 264 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~------ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~----------------------- 264 (441)
..++++-||-..+.. -+..++.+.+..++..|||.|||+|++.+.++....
T Consensus 157 g~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~ 236 (703)
T 3v97_A 157 GDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAI 236 (703)
T ss_dssp SSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHH
T ss_pred CCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHH
Confidence 345666665433322 233344556677899999999999999998887641
Q ss_pred ------------------CCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 265 ------------------GKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 265 ------------------~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
....|+|+|+++.+++.++.|++..|+.+ |.+.++|+.++..... .++||.|++|||.
T Consensus 237 w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~-~~~~d~Iv~NPPY 313 (703)
T 3v97_A 237 WQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP-KGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCT-TCCCCEEEECCCC
T ss_pred HHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccc-cCCCCEEEeCCCc
Confidence 12579999999999999999999999965 9999999998754321 1379999999997
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=97.65 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=93.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++...|..++.++.+|+..++... ++||+|+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP---DSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS---SCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC---CCEEEEEEc
Confidence 68999999999999999887763 3699999999999999999988776567999999998876543 579999976
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC-----------hh
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ-----------VE 388 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~-----------~E 388 (441)
-. +..- ... ....+|..+.+.++ ||.++.++..... .-
T Consensus 154 ~~------l~~~-----------------~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 203 (241)
T 2ex4_A 154 WV------IGHL-----------------TDQ-------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCR 203 (241)
T ss_dssp SC------GGGS-----------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEE
T ss_pred ch------hhhC-----------------CHH-------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccC
Confidence 32 2110 011 12467788878777 6888776542211 11
Q ss_pred cHHHHHHHhchhcCCCeEEec
Q 013515 389 NEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~~~~~~ 409 (441)
+.+.+.++++ ..||+++.
T Consensus 204 ~~~~~~~~l~---~aGf~~~~ 221 (241)
T 2ex4_A 204 DLDVVRRIIC---SAGLSLLA 221 (241)
T ss_dssp BHHHHHHHHH---HTTCCEEE
T ss_pred CHHHHHHHHH---HcCCeEEE
Confidence 4566667764 34676544
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-09 Score=98.62 Aligned_cols=111 Identities=16% Similarity=0.076 Sum_probs=82.5
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
-...+...+.+.++.+|||+|||+|..+..+++ ...+|+++|+++.+++.++++. ++.++++|+.+++..+
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCC
Confidence 344556677778899999999999999999987 3479999999999988776543 7899999998877543
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
++||.|++... ...+ +| . ..+|..+.+.++||.++..++.
T Consensus 93 ---~~fD~v~~~~~---l~~~---~~----------------~----------~~~l~~~~~~LkgG~~~~~~~~ 132 (261)
T 3ege_A 93 ---KSVDGVISILA---IHHF---SH----------------L----------EKSFQEMQRIIRDGTIVLLTFD 132 (261)
T ss_dssp ---TCBSEEEEESC---GGGC---SS----------------H----------HHHHHHHHHHBCSSCEEEEEEC
T ss_pred ---CCEeEEEEcch---Hhhc---cC----------------H----------HHHHHHHHHHhCCcEEEEEEcC
Confidence 68999997433 1111 11 1 3667777776667767776665
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=92.62 Aligned_cols=126 Identities=13% Similarity=0.021 Sum_probs=89.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++ ++.+..+|+..++ .. ++||.|
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~-~~---~~fD~v 106 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD-AI---DAYDAV 106 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC-CC---SCEEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC-CC---CcEEEE
Confidence 3467899999999999999999876 369999999999999999887 3457789998877 22 789999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh---------
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV--------- 387 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~--------- 387 (441)
++... +.. ...+ ....+|..+.+.++ ||.++.+++.....
T Consensus 107 ~~~~~------l~~-----------------~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 156 (211)
T 3e23_A 107 WAHAC------LLH-----------------VPRD-------ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYY 156 (211)
T ss_dssp EECSC------GGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEE
T ss_pred EecCc------hhh-----------------cCHH-------HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhc
Confidence 97432 211 0111 12467778878777 78888876654432
Q ss_pred --hcHHHHHHHhchhcCCC-eEEec
Q 013515 388 --ENEDVIKSVLPIAMSFG-FQLAT 409 (441)
Q Consensus 388 --ENe~vV~~~l~~~~~~~-~~~~~ 409 (441)
-+.+.+...++. .| |+++.
T Consensus 157 ~~~~~~~~~~~l~~---aG~f~~~~ 178 (211)
T 3e23_A 157 NYPSEEWLRARYAE---AGTWASVA 178 (211)
T ss_dssp CCCCHHHHHHHHHH---HCCCSEEE
T ss_pred cCCCHHHHHHHHHh---CCCcEEEE
Confidence 256667777753 35 65543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-09 Score=104.29 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+|.+|||+|||+|..++.+|+. ++.+|+|+|.++ +++.++++++.+|+ ++|+++++|+.++... ++||+|+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp----e~~Dviv 154 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP----EQVDAIV 154 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC----ccccEEE
Confidence 36899999999999998877764 457999999996 89999999999998 4699999999987643 6799999
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
.+.-
T Consensus 155 sE~~ 158 (376)
T 4hc4_A 155 SEWM 158 (376)
T ss_dssp CCCC
T ss_pred eecc
Confidence 7654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=97.37 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g 290 (441)
++.+|||+|||+|..+..++...++ .+|+++|+++.+++.++++++..+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC----
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhh
Confidence 6889999999999999999998654 699999999999999999987655
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=95.78 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=76.3
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|..+......++..+++.++++|||+|||+|..|..+++.. ++|+++|+++.+++.++++++. .++++++++|+.
T Consensus 12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~ 86 (244)
T 1qam_A 12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDIL 86 (244)
T ss_dssp BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGG
T ss_pred ccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHH
Confidence 45555566667777888899999999999999999999873 7999999999999999998864 358999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPC 323 (441)
+++.... ..| .|+.|+|.
T Consensus 87 ~~~~~~~--~~~-~vv~nlPy 104 (244)
T 1qam_A 87 QFKFPKN--QSY-KIFGNIPY 104 (244)
T ss_dssp GCCCCSS--CCC-EEEEECCG
T ss_pred hCCcccC--CCe-EEEEeCCc
Confidence 8875421 345 68999996
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=106.04 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=67.8
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+ ++|+++.+|+.+++.. ++||
T Consensus 154 l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~----~~fD 226 (480)
T 3b3j_A 154 HTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----EQVD 226 (480)
T ss_dssp GGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEE
T ss_pred hhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC----CCeE
Confidence 44567899999999999999988874 446999999998 99999999999998 6899999999886532 5799
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
+|+++++
T Consensus 227 ~Ivs~~~ 233 (480)
T 3b3j_A 227 IIISEPM 233 (480)
T ss_dssp EEECCCC
T ss_pred EEEEeCc
Confidence 9998876
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=95.04 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=82.5
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.+..++...++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++... .++.++++|+..++...
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~--- 105 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQ--- 105 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCT---
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCC---
Confidence 4566777778999999999999999999876 334999999999999999887643 36899999998876432
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
++||.|++... +..-+| ...+|..+.+.++ ||.++.++
T Consensus 106 ~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 106 DSFDLAYSSLA------LHYVED--------------------------VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp TCEEEEEEESC------GGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEecc------ccccch--------------------------HHHHHHHHHHhcCcCcEEEEEe
Confidence 68999997432 111011 1367777777777 68888765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-08 Score=93.26 Aligned_cols=74 Identities=30% Similarity=0.390 Sum_probs=64.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...|. ++.++++|+.+++.. ++||.|
T Consensus 38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~----~~fD~v 109 (252)
T 1wzn_A 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK----NEFDAV 109 (252)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC----SCEEEE
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC----CCccEE
Confidence 3467889999999999999999875 36899999999999999999998886 689999999887643 579999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 110 ~~ 111 (252)
T 1wzn_A 110 TM 111 (252)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=97.84 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=65.0
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..+...+.+.++.+|||+|||+|..+..++. ...+|+++|+++.+++.+++++ .++.+..+|+..++..
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~--- 115 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVD--- 115 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCS---
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcC---
Confidence 3445667788899999999999999999988 3479999999999999998765 4678899999887642
Q ss_pred CCCccEEEEc
Q 013515 311 YSEVRAILLD 320 (441)
Q Consensus 311 ~~~fD~Il~D 320 (441)
++||.|++.
T Consensus 116 -~~fD~v~~~ 124 (279)
T 3ccf_A 116 -KPLDAVFSN 124 (279)
T ss_dssp -SCEEEEEEE
T ss_pred -CCcCEEEEc
Confidence 689999974
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-08 Score=96.67 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=61.8
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--C
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--K 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~--~ 307 (441)
...+...+.+.+|.+|||+|||+|..+..+++. ..+|+++|+|+.|++.+++++... .+..|+.++.. .
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccc
Confidence 345556778889999999999999999999886 369999999999999999987654 12233333332 1
Q ss_pred CCCCCCccEEEEcCC
Q 013515 308 DPAYSEVRAILLDPS 322 (441)
Q Consensus 308 ~~~~~~fD~Il~DpP 322 (441)
....++||.|+++..
T Consensus 105 ~~~~~~fD~Vv~~~~ 119 (261)
T 3iv6_A 105 KELAGHFDFVLNDRL 119 (261)
T ss_dssp GGGTTCCSEEEEESC
T ss_pred cccCCCccEEEEhhh
Confidence 000257999998654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=98.60 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=86.5
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---~~v~~~~~D~~~~~~~~ 308 (441)
.+...+.+.++ +|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...+. .++.++++|+.+++..
T Consensus 74 ~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 148 (299)
T 3g2m_A 74 EFATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD- 148 (299)
T ss_dssp HHHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS-
T ss_pred HHHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC-
Confidence 34445554444 9999999999999999876 36899999999999999999998775 6899999999987652
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
++||.|++.. +++. . .+++ .+..+|..+.+.++ ||.|+.++....
T Consensus 149 ---~~fD~v~~~~-----~~~~-~----------------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 149 ---KRFGTVVISS-----GSIN-E----------------LDEA-------DRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp ---CCEEEEEECH-----HHHT-T----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred ---CCcCEEEECC-----cccc-c----------------CCHH-------HHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 6899998521 1110 0 0121 23467788878777 788888876643
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=97.93 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.+|||+|||+|+.+..++... +..+|+++|+++.+++.+++++..+ ++ ++++++.+|+....... .++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeE
Confidence 46799999999999999888753 4579999999999999999998753 33 57999999987643222 167999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
|++|+|.. .+. ++. + .+ .+++..+.+.|+ +|.++..+.+
T Consensus 152 Ii~d~~~~-~~~----~~~-l-----------~~-----------~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 152 IMVDSTEP-VGP----AVN-L-----------FT-----------KGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EEESCSSC-CSC----CCC-C-----------ST-----------THHHHHHHHHEEEEEEEEEECCC
T ss_pred EEECCCCC-CCc----chh-h-----------hH-----------HHHHHHHHHhcCCCcEEEEEcCC
Confidence 99999852 221 110 0 00 256677777777 6888777655
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-08 Score=88.73 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=88.3
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++ .+++.+..+| .+... ++|
T Consensus 11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~---~~~ 76 (170)
T 3i9f_A 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPD---NSV 76 (170)
T ss_dssp HHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCT---TCE
T ss_pred HhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCC---Cce
Confidence 44567789999999999999999998874 4999999999999999888 4578999999 22222 679
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh-----
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE----- 388 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E----- 388 (441)
|.|++..... .-+ . ...+|+.+.+.++ +|.++.++......+
T Consensus 77 D~v~~~~~l~------~~~----------------~----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 124 (170)
T 3i9f_A 77 DFILFANSFH------DMD----------------D----------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPL 124 (170)
T ss_dssp EEEEEESCST------TCS----------------C----------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCG
T ss_pred EEEEEccchh------ccc----------------C----------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchH
Confidence 9999653311 100 0 1366777777777 688887765543221
Q ss_pred ----cHHHHHHHhchhcCCCeEEecC
Q 013515 389 ----NEDVIKSVLPIAMSFGFQLATP 410 (441)
Q Consensus 389 ----Ne~vV~~~l~~~~~~~~~~~~~ 410 (441)
+.+.+.+.+ . +|+++..
T Consensus 125 ~~~~~~~~~~~~l----~-Gf~~~~~ 145 (170)
T 3i9f_A 125 SIRMDEKDYMGWF----S-NFVVEKR 145 (170)
T ss_dssp GGCCCHHHHHHHT----T-TEEEEEE
T ss_pred hhhcCHHHHHHHH----h-CcEEEEc
Confidence 245566665 2 8887653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=95.23 Aligned_cols=135 Identities=13% Similarity=0.024 Sum_probs=94.1
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..+...++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... .++.++++|+..++... ++|
T Consensus 87 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~---~~f 159 (254)
T 1xtp_A 87 ASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPP---NTY 159 (254)
T ss_dssp HTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCS---SCE
T ss_pred HhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCC---CCe
Confidence 34456678999999999999999998874 468999999999999999987654 57999999998876443 689
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC-------
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ------- 386 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~------- 386 (441)
|+|++.- ++.. ...+ ....+|..+.+.++ ||.++.++.....
T Consensus 160 D~v~~~~------~l~~-----------------~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 209 (254)
T 1xtp_A 160 DLIVIQW------TAIY-----------------LTDA-------DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDK 209 (254)
T ss_dssp EEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEET
T ss_pred EEEEEcc------hhhh-----------------CCHH-------HHHHHHHHHHHhcCCCeEEEEEecCCCcccceecc
Confidence 9999632 2211 0111 13467778877777 7888887642211
Q ss_pred -----hhcHHHHHHHhchhcCCCeEEec
Q 013515 387 -----VENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 387 -----~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.-+.+.+.+.|+. .||+++.
T Consensus 210 ~~~~~~~~~~~~~~~l~~---aGf~~~~ 234 (254)
T 1xtp_A 210 EDSSLTRSDIHYKRLFNE---SGVRVVK 234 (254)
T ss_dssp TTTEEEBCHHHHHHHHHH---HTCCEEE
T ss_pred cCCcccCCHHHHHHHHHH---CCCEEEE
Confidence 1134566666643 4666543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-09 Score=103.21 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=80.1
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|..+......++..+++.++++|||+|||+|..+..++... ++|+|+|+++.+++.++++++ +..+++++++|+.
T Consensus 11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~ 85 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDIL 85 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCT
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChh
Confidence 56666677778888888899999999999999999999872 799999999999999988776 3468999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGS 326 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~ 326 (441)
+++... .++| .|+.|||+..+
T Consensus 86 ~~~~~~--~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 86 QFQFPN--KQRY-KIVGNIPYHLS 106 (245)
T ss_dssp TTTCCC--SSEE-EEEEECCSSSC
T ss_pred hcCccc--CCCc-EEEEeCCcccc
Confidence 877432 1468 89999998654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=93.51 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=84.2
Q ss_pred HHHHHhCCC--CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 232 MVAAALAPK--PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 232 l~~~~l~~~--~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
.+..++... ++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...+. ++.++++|+.+++..
T Consensus 26 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-- 99 (246)
T 1y8c_A 26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN-- 99 (246)
T ss_dssp HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS--
T ss_pred HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc--
Confidence 344444333 7889999999999999998876 25899999999999999999998886 789999999887643
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||.|++..- ++..-+ +.+ ....+|..+.+.++ ||.++.++.
T Consensus 100 --~~fD~v~~~~~-----~l~~~~----------------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 100 --RKFDLITCCLD-----STNYII----------------DSD-------DLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp --CCEEEEEECTT-----GGGGCC----------------SHH-------HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred --CCceEEEEcCc-----cccccC----------------CHH-------HHHHHHHHHHHhcCCCcEEEEEec
Confidence 67999997430 111100 111 12467888888887 677776543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=94.91 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++.. .+|+++|+++.+++.+++++...+ .++.++++|+.+++.. ++||.|++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~----~~fD~v~~ 102 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP----EPVDAITI 102 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS----SCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC----CCcCEEEE
Confidence 45789999999999999888764 689999999999999999998887 4789999999887532 67999997
Q ss_pred cC
Q 013515 320 DP 321 (441)
Q Consensus 320 Dp 321 (441)
..
T Consensus 103 ~~ 104 (243)
T 3d2l_A 103 LC 104 (243)
T ss_dssp CT
T ss_pred eC
Confidence 54
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-09 Score=100.57 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=81.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCc
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
...+.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++... |+ ++++++.+|+....... .++|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~f 169 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--QDAF 169 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--SSCE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC--CCCc
Confidence 3457899999999999999998763 4579999999999999999998762 33 57999999987643221 1679
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
|+|++|+|... + |.. ...+.++++.+.+.|+ +|.++..+.+
T Consensus 170 D~Ii~d~~~~~-~-----~~~----------------------~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 170 DVIITDSSDPM-G-----PAE----------------------SLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEEEECC---------------------------------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEECCCCCC-C-----cch----------------------hhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99999998421 1 000 0112467777778777 6887776644
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=93.31 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++. ...++.++++|+.+++... ++||.|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~---~~fD~v~~ 122 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFEN---EQFEAIMA 122 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCT---TCEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCC---CCccEEEE
Confidence 47889999999999999999886 368999999999999998874 3367999999999876543 68999996
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
... +..-+| + ..+|..+.+.++ ||.++.++...
T Consensus 123 ~~~------l~~~~~----------------~----------~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 123 INS------LEWTEE----------------P----------LRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp ESC------TTSSSC----------------H----------HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cCh------HhhccC----------------H----------HHHHHHHHHHhCCCeEEEEEEcCC
Confidence 322 211111 1 366778878777 68888776443
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=107.08 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=108.9
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC--------------CcEEEEEeCCHHHHHHHHH
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG--------------KGKIVACELNKERVRRLKD 284 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~--------------~~~V~a~D~~~~rl~~l~~ 284 (441)
..|.|+--..-+.+++.++.+.+| +|+|.|||+|++.+.++..+.. ...++|+|+++.++..++.
T Consensus 223 ~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~ 301 (544)
T 3khk_A 223 QGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301 (544)
T ss_dssp CSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred cCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence 346776666778888999998887 9999999999998887765421 3589999999999999999
Q ss_pred HHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccccc--ccCccCCCCCCCCCCCcccHHHHHHHHHHH
Q 013515 285 TIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE--RLDHLLPSHASGHTADPTEMERLNKLSAFQ 361 (441)
Q Consensus 285 ~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~--~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q 361 (441)
|+...|+. ++.+.++|....+... ..+||+|+.+||.+....... ..|.++........... +..-...+
T Consensus 302 Nl~l~gi~~~i~i~~gDtL~~~~~~--~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~-----~~~~~~~~ 374 (544)
T 3khk_A 302 NMVIRGIDFNFGKKNADSFLDDQHP--DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRIL-----TPPTGNAN 374 (544)
T ss_dssp HHHHTTCCCBCCSSSCCTTTSCSCT--TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEEC-----CCCTTCTH
T ss_pred HHHHhCCCcccceeccchhcCcccc--cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccc-----cCCCcchh
Confidence 99999984 4444788877654322 268999999999976432110 01111110000000000 00001122
Q ss_pred HHHHHHHhCCCC-CcEEEEEc-CCC-CCh-hcHHHHHHHh
Q 013515 362 KKALRHALSFPG-VERVVYST-CSI-HQV-ENEDVIKSVL 397 (441)
Q Consensus 362 ~~lL~~a~~~~~-~G~lvYsT-CS~-~~~-ENe~vV~~~l 397 (441)
...+.++++.++ +|++++.+ -++ +.. -.+..+.+.|
T Consensus 375 ~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~L 414 (544)
T 3khk_A 375 FAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTL 414 (544)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHH
Confidence 357888988887 68766654 222 222 2466676666
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.2e-09 Score=102.20 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G--AANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g--~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
..+.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++..+ + -++++++.+|+.+..... .++||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc--CCCce
Confidence 456899999999999999998753 3579999999999999999998762 2 257999999987643211 16799
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+|++|++.. .|. ++. ..+.++++.+.+.++ +|.++..+.+
T Consensus 192 vIi~d~~~p-~~~----~~~-----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 192 VIIVDSSDP-IGP----AET-----------------------LFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EEEEECCCS-SSG----GGG-----------------------GSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCcCC-CCc----chh-----------------------hhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999998632 111 000 001467777777777 7888876544
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=96.91 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=87.0
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCC-
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLD- 305 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~----~~v~~~~~D~~~~~- 305 (441)
..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...+. .++.+..+|+..++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 44555666678899999999999999999886 24999999999999999998765442 46788899988765
Q ss_pred --CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 306 --PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 306 --~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
... ++||+|++... ..+.+ +|.. .+. .....+|..+.+.|+ ||.++.+++
T Consensus 124 ~~~~~---~~fD~V~~~g~--~l~~~---~~~~------------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 124 DVPAG---DGFDAVICLGN--SFAHL---PDSK------------GDQ-------SEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HSCCT---TCEEEEEECTT--CGGGS---CCSS------------SSS-------HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccC---CCeEEEEEcCh--HHhhc---Cccc------------cCH-------HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 332 68999996321 12211 1110 001 123568888988887 688887766
Q ss_pred C
Q 013515 383 S 383 (441)
Q Consensus 383 S 383 (441)
+
T Consensus 177 ~ 177 (293)
T 3thr_A 177 N 177 (293)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=97.40 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=74.9
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
...-...++..+++.+| +|||+|||+|..|..+++.. ++|+|+|+|+.+++.+++++. + .+++++++|+.+++
T Consensus 32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~~~ 104 (271)
T 3fut_A 32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALLYP 104 (271)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGGSC
T ss_pred CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhhCC
Confidence 33445667778888999 99999999999999999862 689999999999999999876 2 58999999999887
Q ss_pred CCCCCCCCccEEEEcCCCC
Q 013515 306 PKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCS 324 (441)
... ...+|.|+.++|..
T Consensus 105 ~~~--~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 105 WEE--VPQGSLLVANLPYH 121 (271)
T ss_dssp GGG--SCTTEEEEEEECSS
T ss_pred hhh--ccCccEEEecCccc
Confidence 542 13689999999975
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=92.59 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC-CCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL-NLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~-~~~~~~~~~~~fD~Il 318 (441)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++ ..+++++++|+. .++... .++||.|+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~--~~~fD~v~ 116 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGL--GAPFGLIV 116 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTC--CCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcC--CCCEEEEE
Confidence 67899999999999999999876 36999999999999999888 357899999995 444331 16899999
Q ss_pred Ec
Q 013515 319 LD 320 (441)
Q Consensus 319 ~D 320 (441)
+.
T Consensus 117 ~~ 118 (226)
T 3m33_A 117 SR 118 (226)
T ss_dssp EE
T ss_pred eC
Confidence 76
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.3e-09 Score=98.55 Aligned_cols=87 Identities=24% Similarity=0.338 Sum_probs=73.0
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--C
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--P 309 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~ 309 (441)
-++..|++++|+.++|++||.||+|..+++. .++|+|+|.|+.+++.+++ ++. ++++++++++.++.... .
T Consensus 13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 13 EALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHT
T ss_pred HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHc
Confidence 4556778999999999999999999999987 4899999999999999988 654 58999999999875211 1
Q ss_pred CCCCccEEEEcCCCCC
Q 013515 310 AYSEVRAILLDPSCSG 325 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg 325 (441)
...+||.|++|.++|.
T Consensus 86 g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 86 GVERVDGILADLGVSS 101 (285)
T ss_dssp TCSCEEEEEEECSCCH
T ss_pred CCCCcCEEEeCCcccc
Confidence 1257999999999987
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=97.10 Aligned_cols=112 Identities=11% Similarity=0.130 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.+.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.+++ ..+|.++++|+.+++..+ ++||.|++-
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~---~sfD~v~~~ 106 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPP---ASVDVAIAA 106 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCS---SCEEEEEEC
T ss_pred CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccC---CcccEEEEe
Confidence 4679999999999999999876 2689999999999987653 257999999999988654 789999861
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh--hcHHHHHHHh
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV--ENEDVIKSVL 397 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~--ENe~vV~~~l 397 (441)
.++ +.. .. .+.+..+.+.|+ ||.|+..+.+.... +-..++..+.
T Consensus 107 ------~~~-h~~----------------~~----------~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 4hg2_A 107 ------QAM-HWF----------------DL----------DRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDRLY 153 (257)
T ss_dssp ------SCC-TTC----------------CH----------HHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHHHHHH
T ss_pred ------eeh-hHh----------------hH----------HHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHHHHHH
Confidence 122 110 11 135666777677 78887776654432 2334455554
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-08 Score=99.39 Aligned_cols=118 Identities=19% Similarity=0.133 Sum_probs=85.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
....+.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++..+ |+ .+++++.+|+..+..... .++
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~-~~~ 194 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-EGS 194 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-TTC
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhcc-CCC
Confidence 34457899999999999999998763 3479999999999999999998864 44 579999999876532111 157
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
||+|++|++... |. ++. ..+.+++..+.+.|+ ||.++..+.+..
T Consensus 195 fDlIi~d~~~p~-~~----~~~-----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 195 YDAVIVDSSDPI-GP----AKE-----------------------LFEKPFFQSVARALRPGGVVCTQAESLW 239 (334)
T ss_dssp EEEEEECCCCTT-SG----GGG-----------------------GGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred ccEEEECCCCcc-Cc----chh-----------------------hhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 999999987311 10 000 012467778878777 788888755543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=97.91 Aligned_cols=116 Identities=18% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
...++.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.+++++..++ -++++++.+|+....... .++
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~ 151 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNT 151 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSC
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCC
Confidence 3345789999999999999998875 345799999999999999999987653 367999999987653221 167
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
||+|++|++.. .|. ...+ .+.++++.+.+.|+ +|.++..+++.
T Consensus 152 fD~Ii~d~~~~-~~~-----~~~l----------------------~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 152 YDVIIVDSSDP-IGP-----AETL----------------------FNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp EEEEEEECCCT-TTG-----GGGG----------------------SSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred ceEEEEcCCCC-CCc-----chhh----------------------hHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 99999998743 221 0000 11466777777777 78888877653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-08 Score=96.63 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~----g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++..+ .-.+++++.+|+..+..... .++|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~f 170 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP-DNTY 170 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC-TTCE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc-CCce
Confidence 3567899999999999999998753 3479999999999999999988542 23579999999987653200 1679
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC-CCChhcHHH
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS-IHQVENEDV 392 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS-~~~~ENe~v 392 (441)
|+|++|++... + |+.. ..+.++++.+.+.|+ +|.++..+.+ ....+....
T Consensus 171 DvIi~d~~~~~-~-----~~~~----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 222 (304)
T 3bwc_A 171 DVVIIDTTDPA-G-----PASK----------------------LFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEK 222 (304)
T ss_dssp EEEEEECC-------------------------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHH
T ss_pred eEEEECCCCcc-c-----cchh----------------------hhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHH
Confidence 99999987421 1 1000 012466777777777 6877765443 223333344
Q ss_pred HHHHhc
Q 013515 393 IKSVLP 398 (441)
Q Consensus 393 V~~~l~ 398 (441)
+.+.|+
T Consensus 223 ~~~~l~ 228 (304)
T 3bwc_A 223 MSRFIR 228 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-08 Score=95.75 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEeccCCC------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA------NIEVLHGDFLN------LDPKD 308 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~------~v~~~~~D~~~------~~~~~ 308 (441)
+|.+|||+|||+|+.+..++.. +.+.|+|+|+|+.+++.++++....+.. ++.+.+.|+.. ++...
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 5889999999999877665543 3468999999999999999998887753 36677777732 21111
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+ .++||+|++ .. ++.- . +..++ +..+|.++.+.|+ ||.++.+|..
T Consensus 126 ~-~~~FD~V~~----~~--~lhy---------~-------~~~~~-------~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 Y-FGKFNIIDW----QF--AIHY---------S-------FHPRH-------YATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp C-SSCEEEEEE----ES--CGGG---------T-------CSTTT-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c-CCCeeEEEE----Cc--hHHH---------h-------CCHHH-------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1 268999973 22 1100 0 00011 1478888888887 7888887763
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=94.04 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=73.1
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
.-...++..+++.++++|||+|||+|..|..++..... .++|+|+|+++.+++.++++. ..+++++++|+.+++.
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~ 104 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDF 104 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCCh
Confidence 34556677888899999999999999999999988533 255999999999999999983 3589999999998874
Q ss_pred CCCCC-C--CccEEEEcCCCC
Q 013515 307 KDPAY-S--EVRAILLDPSCS 324 (441)
Q Consensus 307 ~~~~~-~--~fD~Il~DpPCS 324 (441)
..... . ..+.|+.++|..
T Consensus 105 ~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 105 GSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp GGGSCSSSSCCEEEEEECCHH
T ss_pred hHhcccccCCceEEEEccCcc
Confidence 32100 0 345799999963
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-08 Score=97.88 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=73.4
Q ss_pred hCCCCCCEEEEEcC------CCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE-EeccCCCCCCCCC
Q 013515 237 LAPKPGWKVLDACS------APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV-LHGDFLNLDPKDP 309 (441)
Q Consensus 237 l~~~~g~~VLDl~a------g~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~-~~~D~~~~~~~~~ 309 (441)
+.+++|++|||+|| |||+ ..++++++..++|+|+|+++. +.++++ +++|+.+++..
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~-- 121 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA-- 121 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS--
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc--
Confidence 35788999999999 6687 556777665689999999987 246778 99999876532
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
++||+|++|+++...|... .|. . + . ..+...+|+.+.+.|+ ||.++..+
T Consensus 122 --~~fD~Vvsn~~~~~~g~~~--~d~-----~-----~--~-------~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 122 --NKWDLIISDMYDPRTKHVT--KEN-----D-----S--K-------EGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp --SCEEEEEECCCCCC---CC--SCC-----C-----C--C-------CTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CcccEEEEcCCcccccccc--ccc-----c-----c--h-------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5799999998877666542 111 0 0 0 0123578888888887 68777643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-08 Score=89.19 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=76.7
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC---CCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL---DPKDP 309 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~---~~~~~ 309 (441)
+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++ .++.+..+|+.++ +...
T Consensus 44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~- 113 (227)
T 3e8s_A 44 ILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPV- 113 (227)
T ss_dssp HHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCC-
T ss_pred HHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccccc-
Confidence 333444566799999999999999998876 35899999999999999887 3456777887766 2222
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
..+||.|++..... .+|. ..+|..+.+.++ ||.++.++-
T Consensus 114 -~~~fD~v~~~~~l~-------~~~~--------------------------~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 114 -GKDYDLICANFALL-------HQDI--------------------------IELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp -CCCEEEEEEESCCC-------SSCC--------------------------HHHHHHHHHTEEEEEEEEEEEC
T ss_pred -CCCccEEEECchhh-------hhhH--------------------------HHHHHHHHHHhCCCeEEEEEec
Confidence 14699999754421 1111 367888888887 688887664
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-08 Score=97.80 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEeccCCCCCCCCCCCCCc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---AANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g---~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..+.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++... | -++++++.+|+....... .++|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc--CCCc
Confidence 356899999999999999998763 3479999999999999999998762 2 368999999998743211 1679
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
|+|++|++... +. ...++. ....+++..+.+.|+ ||.++..+.+
T Consensus 153 D~Ii~d~~~~~-~~-~~~~~~-----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 153 DVVIIDLTDPV-GE-DNPARL-----------------------LYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEEEECCCCB-ST-TCGGGG-----------------------GSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cEEEECCCCcc-cc-cCcchh-----------------------ccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99999987532 10 000000 002467888888887 6877766544
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-08 Score=90.04 Aligned_cols=73 Identities=11% Similarity=-0.056 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+.++|||+|||+|..++.++...+. .+++|+|+|+.+++.+++++.++|+. ++++ .|.....+. ++||+|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~-a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~----~~~DvVL 120 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEK-IIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYK----GTYDVVF 120 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCC-CEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTT----SEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCC----CCcChhh
Confidence 45779999999999999988776544 59999999999999999999999997 6766 555433222 6799997
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 121 a 121 (200)
T 3fzg_A 121 L 121 (200)
T ss_dssp E
T ss_pred H
Confidence 5
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-08 Score=91.25 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+...+. ..++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++.. ++.++++|+.++. .+
T Consensus 33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~-~~--- 101 (250)
T 2p7i_A 33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQ-LP--- 101 (250)
T ss_dssp HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCC-CS---
T ss_pred HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcC-cC---
Confidence 333443 3578899999999999999888752 4799999999999999887643 7899999998873 22
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh-CCCC-CcEEEEEcC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL-SFPG-VERVVYSTC 382 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~-~~~~-~G~lvYsTC 382 (441)
++||+|++. +++..-+| + ..+|..+. +.++ ||.++.++.
T Consensus 102 ~~fD~v~~~------~~l~~~~~----------------~----------~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 102 RRYDNIVLT------HVLEHIDD----------------P----------VALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp SCEEEEEEE------SCGGGCSS----------------H----------HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CcccEEEEh------hHHHhhcC----------------H----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 689999963 22221111 1 36788888 8887 687777664
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=93.91 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=74.5
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|.....-...++..+++.++++|||+|||+|..|..+++. +..+|+|+|+|+.+++.++++ +..+++++++|+.
T Consensus 13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDERLEVINEDAS 86 (249)
T ss_dssp CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTT
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchh
Confidence 3344445566777888889999999999999999999875 347999999999999999887 3468999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCS 324 (441)
+++..+. ... ..|+.++|..
T Consensus 87 ~~~~~~~-~~~-~~vv~NlPy~ 106 (249)
T 3ftd_A 87 KFPFCSL-GKE-LKVVGNLPYN 106 (249)
T ss_dssp TCCGGGS-CSS-EEEEEECCTT
T ss_pred hCChhHc-cCC-cEEEEECchh
Confidence 8875431 123 4899999974
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=88.31 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++ .++.++++|+.+++. . ++||.|++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~---~~~D~v~~ 106 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-G---RKFSAVVS 106 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-S---SCEEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-C---CCCcEEEE
Confidence 568899999999999999999874 38999999999999998864 468899999988764 2 67999984
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
+. +++..-+ +++ ....+|..+.+.++ ||.++.+++..
T Consensus 107 ----~~-~~~~~~~----------------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 107 ----MF-SSVGYLK----------------TTE-------ELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp ----CT-TGGGGCC----------------SHH-------HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred ----cC-chHhhcC----------------CHH-------HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 21 1221100 112 22467888888887 78888877654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=92.77 Aligned_cols=113 Identities=15% Similarity=0.046 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-------CCCcEEEEeccCCCCC----CCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-------GAANIEVLHGDFLNLD----PKD 308 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-------g~~~v~~~~~D~~~~~----~~~ 308 (441)
.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++.... +..++.++++|+...+ ..+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 36889999999999999998874 3579999999999999999998876 4458999999998875 211
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
+ .++||.|++.- ++..-. .+.+ ....+|..+.+.++ ||.++.+|..
T Consensus 111 ~-~~~fD~V~~~~------~l~~~~---------------~~~~-------~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 111 P-QMCFDICSCQF------VCHYSF---------------ESYE-------QADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp T-TCCEEEEEEET------CGGGGG---------------GSHH-------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred C-CCCEEEEEEec------chhhcc---------------CCHH-------HHHHHHHHHHHHhCCCcEEEEecCC
Confidence 1 24899999632 110000 0111 12477888888887 6888877654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-08 Score=89.28 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++.+|||+|||+|..+..+ +..+|+++|+++.+++.++++. .++.++++|+.+++... ++||.|++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~---~~fD~v~~~ 102 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPG---ESFDVVLLF 102 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCS---SCEEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCC---CcEEEEEEc
Confidence 7899999999999988766 2238999999999999998876 46789999998876443 689999965
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.. +..-+| ...+|..+.+.++ ||.++.++..
T Consensus 103 ~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 103 TT------LEFVED--------------------------VERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp SC------TTTCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Ch------hhhcCC--------------------------HHHHHHHHHHHcCCCCEEEEEecC
Confidence 32 211011 1367777777777 6888877654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-08 Score=98.71 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
..+.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++... |+ ++++++.+|+....... .++||
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD 183 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH--KNEFD 183 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC--TTCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc--CCCce
Confidence 346799999999999999998763 4579999999999999999998764 33 57999999987643221 26799
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
+|++|++.. .| |+. ...+.++++.+.+.|+ +|.++..+.+..
T Consensus 184 ~Ii~d~~~~-~~-----~~~----------------------~l~t~~~l~~~~~~LkpgG~lv~~~~~~~ 226 (314)
T 2b2c_A 184 VIITDSSDP-VG-----PAE----------------------SLFGQSYYELLRDALKEDGILSSQGESVW 226 (314)
T ss_dssp EEEECCC-----------------------------------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEEcCCCC-CC-----cch----------------------hhhHHHHHHHHHhhcCCCeEEEEECCCcc
Confidence 999999732 11 000 0012467777877777 788887765543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-08 Score=98.87 Aligned_cols=91 Identities=20% Similarity=0.328 Sum_probs=74.7
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 310 (441)
++..|.++||+.++|+++|.||.|..+++.+++.|+|+|+|.++.+++.++ ++ .-++++++++++.++..... .
T Consensus 49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHHHhcC
Confidence 456778999999999999999999999999888899999999999999884 33 33689999999988753211 0
Q ss_pred C-CCccEEEEcCCCCCCc
Q 013515 311 Y-SEVRAILLDPSCSGSG 327 (441)
Q Consensus 311 ~-~~fD~Il~DpPCSg~G 327 (441)
. +++|.||+|-.||+.-
T Consensus 125 ~~~~vDgILfDLGVSS~Q 142 (347)
T 3tka_A 125 LIGKIDGILLDLGVSSPQ 142 (347)
T ss_dssp CTTCEEEEEEECSCCHHH
T ss_pred CCCcccEEEECCccCHHH
Confidence 1 3699999999999753
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.8e-08 Score=103.18 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=98.5
Q ss_pred cCcccccchhhHHHHHH----hCC--CCCCEEEEEcCCCchHHHHHHHHhc--CCcEEEEEeCCHHHHHHH--HHHHHH-
Q 013515 220 NGCVFLQGKASSMVAAA----LAP--KPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRL--KDTIKL- 288 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~----l~~--~~g~~VLDl~ag~G~kt~~la~~~~--~~~~V~a~D~~~~rl~~l--~~~~~~- 288 (441)
.|.|+--..-+.+++.+ +.. .++.+|||.|||+|++.+.++..++ ....++|+|+++.+++.+ +.++..
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 35554444445555555 332 3688999999999999999988764 236899999999999998 666554
Q ss_pred ---hCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHH--------
Q 013515 289 ---SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKL-------- 357 (441)
Q Consensus 289 ---~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l-------- 357 (441)
.|+.+..+...|+....... ..+||+|+.+||.++...... + ..+....+
T Consensus 374 ~LlhGi~~~~I~~dD~L~~~~~~--~~kFDVVIgNPPYg~~~~~~~--e---------------~kd~~~r~~~g~p~~p 434 (878)
T 3s1s_A 374 QLVSSNNAPTITGEDVCSLNPED--FANVSVVVMNPPYVSGVTDPA--I---------------KRKFAHKIIQLTGNRP 434 (878)
T ss_dssp TTCBTTBCCEEECCCGGGCCGGG--GTTEEEEEECCBCCSSCCCHH--H---------------HHHHHHHHHHHHSSCC
T ss_pred hhhcCCCcceEEecchhcccccc--cCCCCEEEECCCccccccchh--h---------------hhhHHHHhhhhccccc
Confidence 34444456667776543221 267999999999865321100 0 00000011
Q ss_pred ------HHHHHHHHHHHhCCCC-CcEEEEEcCC-CCC--hhcHHHHHHHh
Q 013515 358 ------SAFQKKALRHALSFPG-VERVVYSTCS-IHQ--VENEDVIKSVL 397 (441)
Q Consensus 358 ------~~~Q~~lL~~a~~~~~-~G~lvYsTCS-~~~--~ENe~vV~~~l 397 (441)
......++.+++++++ +|++++.+=+ +.. ...+.-+.+.|
T Consensus 435 ~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~L 484 (878)
T 3s1s_A 435 QTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFL 484 (878)
T ss_dssp SSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHH
Confidence 1245678899998877 7877665433 321 22355666665
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-08 Score=98.33 Aligned_cols=73 Identities=12% Similarity=0.051 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH---HHhCCCcEEEE--eccCCCCCCCCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI---KLSGAANIEVL--HGDFLNLDPKDPAYSE 313 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~---~~~g~~~v~~~--~~D~~~~~~~~~~~~~ 313 (441)
+++|.+|||+|||||+.+..+++. ++|+|+|+++ ++..++++. +..| .++.++ ++|+..++ . ++
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--~---~~ 148 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKME--P---FQ 148 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGCC--C---CC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhCC--C---CC
Confidence 468999999999999999998876 6899999998 533222110 0011 168888 89998865 2 67
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
||.|++|..
T Consensus 149 fD~Vvsd~~ 157 (276)
T 2wa2_A 149 ADTVLCDIG 157 (276)
T ss_dssp CSEEEECCC
T ss_pred cCEEEECCC
Confidence 999999977
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-08 Score=96.80 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH---HHhCCCcEEEE--eccCCCCCCCCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI---KLSGAANIEVL--HGDFLNLDPKDPAYSE 313 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~---~~~g~~~v~~~--~~D~~~~~~~~~~~~~ 313 (441)
+++|.+|||+|||||+.+..+++. ++|+|+|+++ ++..+++.. +.+| .++.++ ++|+.+++ . ++
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--~---~~ 140 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP--V---ER 140 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC--C---CC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC--C---CC
Confidence 568999999999999999988875 6899999998 432221110 0111 167888 89998875 2 67
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
||.|++|..
T Consensus 141 fD~V~sd~~ 149 (265)
T 2oxt_A 141 TDVIMCDVG 149 (265)
T ss_dssp CSEEEECCC
T ss_pred CcEEEEeCc
Confidence 999999977
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.2e-07 Score=90.23 Aligned_cols=119 Identities=11% Similarity=0.060 Sum_probs=88.5
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~ 306 (441)
.....+...++..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++++..|+.+ |+++.+|+.+.+.
T Consensus 177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 254 (359)
T 1x19_A 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 254 (359)
T ss_dssp HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence 3344555666777889999999999999999998853 479999999 999999999999998854 9999999987643
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
. .+|+|++.- ++.. +.. ....++|+++.+.++ ||.++.....
T Consensus 255 ~-----~~D~v~~~~------vlh~-----------------~~d-------~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 255 P-----EADAVLFCR------ILYS-----------------ANE-------QLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp C-----CCSEEEEES------CGGG-----------------SCH-------HHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred C-----CCCEEEEec------hhcc-----------------CCH-------HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 2 349998722 2211 111 123578899999887 6877655433
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-07 Score=90.42 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=68.7
Q ss_pred HHHHHhCC--CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 013515 232 MVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 308 (441)
Q Consensus 232 l~~~~l~~--~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 308 (441)
.+...++. .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...|+. +|+++.+|+.+.+..
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 230 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG- 230 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC-
Confidence 44445566 778999999999999999999886 34799999999 9999999999999884 699999999876432
Q ss_pred CCCCCccEEEE
Q 013515 309 PAYSEVRAILL 319 (441)
Q Consensus 309 ~~~~~fD~Il~ 319 (441)
..||+|++
T Consensus 231 ---~~~D~v~~ 238 (335)
T 2r3s_A 231 ---NDYDLVLL 238 (335)
T ss_dssp ---SCEEEEEE
T ss_pred ---CCCcEEEE
Confidence 34999997
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=89.47 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++.. .+ ++.+|+.+++... ++||.|++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~---~~fD~v~~~ 121 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPS---GAFEAVLAL 121 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCT---TCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCC---CCEEEEEEc
Confidence 7889999999999999998875 3689999999999999988754 23 7788998876433 689999864
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
... -..+ .-...+|..+.+.++ ||.++.++.+
T Consensus 122 ~~~------~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 122 GDV------LSYV-------------------------ENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp SSH------HHHC-------------------------SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred chh------hhcc-------------------------ccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 321 0000 002467778878777 7888877655
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=88.93 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--CCCCcc
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--AYSEVR 315 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~~~~fD 315 (441)
.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++ ...++.++++|+.+++.... ....||
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCcc
Confidence 35788999999999999999999874 28999999999999999876 33589999999987653210 002489
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
+|++...
T Consensus 127 ~v~~~~~ 133 (245)
T 3ggd_A 127 NIYMRTG 133 (245)
T ss_dssp EEEEESS
T ss_pred EEEEcch
Confidence 9987644
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=8.9e-07 Score=88.12 Aligned_cols=83 Identities=23% Similarity=0.224 Sum_probs=68.6
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~ 309 (441)
..+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+. +|+++.+|+.+..+
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--- 246 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP--- 246 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC---
Confidence 344455667788999999999999999999885 3479999999 99999999999999885 89999999975211
Q ss_pred CCCCccEEEEc
Q 013515 310 AYSEVRAILLD 320 (441)
Q Consensus 310 ~~~~fD~Il~D 320 (441)
..||+|++.
T Consensus 247 --~~~D~v~~~ 255 (374)
T 1qzz_A 247 --VTADVVLLS 255 (374)
T ss_dssp --CCEEEEEEE
T ss_pred --CCCCEEEEe
Confidence 249999874
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=89.88 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++..++ ..+|+++|+++.+++.++++. .++.+..+|+..++..+ ++||.|++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~---~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSD---TSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCT---TCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCC---CceeEEEE
Confidence 5789999999999999999998763 469999999999999987763 46788999998876443 68999996
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=89.36 Aligned_cols=99 Identities=7% Similarity=-0.176 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~----g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
..+.+|||+|||+|+.+..++.. + .+|+++|+++.+++.+++++... .-++++++.+|+..+. ++||
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------CCEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH------hhCC
Confidence 34679999999999999988876 4 79999999999999999876432 2257999999998764 4699
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
+|++|.+ .| . ..+..+.+.|+ ||.++..+++.
T Consensus 142 ~Ii~d~~---------dp------------------~----------~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 142 LIFCLQE---------PD------------------I----------HRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp EEEESSC---------CC------------------H----------HHHHHHHTTEEEEEEEEEEEECT
T ss_pred EEEECCC---------Ch------------------H----------HHHHHHHHhcCCCcEEEEEcCCc
Confidence 9999953 11 0 16777888887 78888776553
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=87.01 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..+.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..|+ ++|+++.+|+.+.....+ +.||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p--~~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP--TGFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC--CCCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC--CCcCEEE
Confidence 457899999999999999999885 4479999999 9999999999998887 579999999987521111 5799998
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
+-- ++-. |..++ ...+|+++.+.++ ||.|+......
T Consensus 254 ~~~------vlh~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 254 MSQ------FLDC-----------------FSEEE-------VISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp EES------CSTT-----------------SCHHH-------HHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred Eec------hhhh-----------------CCHHH-------HHHHHHHHHHhcCCCcEEEEEeecc
Confidence 522 1100 11221 2467888888666 78777655443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-07 Score=92.48 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=81.9
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
.+|||+|||.|+.+..+++... ..+|+++|+++.+++.+++++...+-.+++++++|+..+..... .++||+|++|.+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~-~~~fDvIi~D~~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT-PASRDVIIRDVF 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC-TTCEEEEEECCS
T ss_pred CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc-CCCCCEEEECCC
Confidence 4999999999999999998654 46999999999999999998865444689999999987642211 167999999976
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
... +. |.. . . ..++++.+.+.|+ +|.++..+.+.
T Consensus 169 ~~~-~~----~~~-----L-------~-----------t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 169 AGA-IT----PQN-----F-------T-----------TVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp TTS-CC----CGG-----G-------S-----------BHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred Ccc-cc----chh-----h-------h-----------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 431 21 110 0 0 1366777777777 78877766543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=86.06 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=85.3
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~ 311 (441)
+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+ ++|++..+|+... .+
T Consensus 194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~p-- 266 (369)
T 3gwz_A 194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET---IP-- 266 (369)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC---CC--
T ss_pred HHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC---CC--
Confidence 3445566778999999999999999999885 4579999999 9999999999999887 6799999999732 11
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
..||+|++-- ++.. +..+ ...++|+++.+.++ ||+|+......
T Consensus 267 ~~~D~v~~~~------vlh~-----------------~~d~-------~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 267 DGADVYLIKH------VLHD-----------------WDDD-------DVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp SSCSEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred CCceEEEhhh------hhcc-----------------CCHH-------HHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 2699998622 2210 1111 12478999999887 67776655443
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=88.32 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++. ++.++++|+.+++. . ++||+|++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-~---~~fD~v~~ 116 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-G---RRFSAVTC 116 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-S---CCEEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-c---CCcCEEEE
Confidence 45789999999999999988876 2589999999999999988753 67899999998765 2 68999996
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
... ++..- .++++ ...+|..+.+.++ ||.++.++
T Consensus 117 ~~~-----~l~~~----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 117 MFS-----SIGHL----------------AGQAE-------LDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp CTT-----GGGGS----------------CHHHH-------HHHHHHHHHHTEEEEEEEEECC
T ss_pred cCc-----hhhhc----------------CCHHH-------HHHHHHHHHHhcCCCcEEEEEe
Confidence 431 12110 01222 2467888888887 67777653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-07 Score=89.27 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~-~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+|.+|||+|||||++|..+++. +.++|+|+|+++.|++.+.++ . .++... ..++..+....-...+||.|++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~~l~~~~fD~v~~ 157 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPVDFTEGLPSFASI 157 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGGGCTTCCCSEEEE
T ss_pred cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchhhCCCCCCCEEEE
Confidence 5789999999999999998886 457999999999999874322 1 233222 3455444432111235999999
Q ss_pred cCCC
Q 013515 320 DPSC 323 (441)
Q Consensus 320 DpPC 323 (441)
|...
T Consensus 158 d~sf 161 (291)
T 3hp7_A 158 DVSF 161 (291)
T ss_dssp CCSS
T ss_pred EeeH
Confidence 8763
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-07 Score=90.72 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhc---CCcEE--EEEeCCHHHHHHHHHHHHHh-CCCcEEE--EeccCCCCC-----
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMK---GKGKI--VACELNKERVRRLKDTIKLS-GAANIEV--LHGDFLNLD----- 305 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~---~~~~V--~a~D~~~~rl~~l~~~~~~~-g~~~v~~--~~~D~~~~~----- 305 (441)
+.++.+|||+|||+|..+..++..+. +...| +++|+|++|++.+++++... ++.++.+ ..+++..+.
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 45788999999999988876544331 34544 99999999999999998764 5666655 455554432
Q ss_pred -CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 306 -PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 306 -~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
..+ ++||.|++- .++..-+| + ...|....++|+ ||.++.++.
T Consensus 130 ~~~~---~~fD~V~~~------~~l~~~~d----------------~----------~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 130 KKEL---QKWDFIHMI------QMLYYVKD----------------I----------PATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp TTCC---CCEEEEEEE------SCGGGCSC----------------H----------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCC---CceeEEEEe------eeeeecCC----------------H----------HHHHHHHHHHcCCCcEEEEEEe
Confidence 112 679999851 11211111 1 357888888887 687776643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=88.64 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CCCCCCCCCccE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL--DPKDPAYSEVRA 316 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~--~~~~~~~~~fD~ 316 (441)
..++.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++ +.++.+|+.+. +..+ ++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~---~~fD~ 104 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPD---KYLDG 104 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCT---TCBSE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCC---CCeeE
Confidence 467899999999999999999886 25799999999999988776 56888888775 3222 68999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
|++. +++..-++ . ....+|..+.+.++ ||.++.++..
T Consensus 105 i~~~------~~l~~~~~-----------------~-------~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 105 VMIS------HFVEHLDP-----------------E-------RLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp EEEE------SCGGGSCG-----------------G-------GHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred EEEC------CchhhCCc-----------------H-------HHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9963 23221110 0 01366777777776 7888877654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.50 E-value=6.8e-08 Score=91.43 Aligned_cols=91 Identities=11% Similarity=0.170 Sum_probs=70.0
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.-...++..+++.+|++|||+|||+|..|. ++. ....+|+|+|+++.+++.+++++... ++++++++|+..++..
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHH
Confidence 344566677788999999999999999999 643 22233999999999999999887643 5899999999987632
Q ss_pred CCCC---CCccEEEEcCCCC
Q 013515 308 DPAY---SEVRAILLDPSCS 324 (441)
Q Consensus 308 ~~~~---~~fD~Il~DpPCS 324 (441)
.. + ...|.|+.++|..
T Consensus 83 ~~-~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 83 EL-AEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HH-HHHHTSCEEEEEECCTT
T ss_pred Hh-hcccCCceEEEECCCCC
Confidence 10 0 1347999999975
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-07 Score=95.43 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=85.4
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC------------CcEEEEEeCCHHHHHHHHHHH
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG------------KGKIVACELNKERVRRLKDTI 286 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~------------~~~V~a~D~~~~rl~~l~~~~ 286 (441)
+.|.|+=-..-+.+++.++++++|++|+|-|||+|++.+.+...+.. ...++++|+++.....++-|+
T Consensus 195 ~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 195 DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 34665554566788899999999999999999999998887776532 246999999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCCCC-CCCCCccEEEEcCCCCCC
Q 013515 287 KLSGAANIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGS 326 (441)
Q Consensus 287 ~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~ 326 (441)
-..|+..-.+.++|....+... ....+||+||.+||.++.
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~ 315 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGE 315 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred HhcCCccccccccccccCchhhhcccccceEEEecCCCCcc
Confidence 9999876667888887654221 112579999999998754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=85.88 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++.+|||+|||+|..+..++.. +++|+++.+++.++++ ++.++.+|+..++... ++||+|++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~---~~fD~v~~~ 109 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKD---ESFDFALMV 109 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCT---TCEEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCC---CCeeEEEEc
Confidence 3889999999999998876432 9999999999998876 4678899998876432 679999975
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-07 Score=89.23 Aligned_cols=114 Identities=17% Similarity=0.076 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC--C------------------------
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A------------------------ 291 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g--~------------------------ 291 (441)
.+.+|.+|||+|||+|..+..++.. +...|+|+|+|+.+++.++++++... +
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4567899999999999887765543 23479999999999999998775431 1
Q ss_pred ---CcEE-EEeccCCCCCCCC-CCCCCccEEEEcCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 013515 292 ---ANIE-VLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL 365 (441)
Q Consensus 292 ---~~v~-~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL 365 (441)
.+|. ++.+|+.+..+.. ...++||+|++- .++-. .+ +. .-...+|
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~------~~l~~i~~----------------~~-------~~~~~~l 180 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL------LAMECACC----------------SL-------DAYRAAL 180 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE------SCHHHHCS----------------SH-------HHHHHHH
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeeh------HHHHHhcC----------------CH-------HHHHHHH
Confidence 1344 8889998743211 012589999851 11100 00 01 1124688
Q ss_pred HHHhCCCC-CcEEEEEcC
Q 013515 366 RHALSFPG-VERVVYSTC 382 (441)
Q Consensus 366 ~~a~~~~~-~G~lvYsTC 382 (441)
.+..++|| ||.++.++.
T Consensus 181 ~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 181 CNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEe
Confidence 99999888 788888863
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.4e-07 Score=88.31 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=85.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 310 (441)
.+...++..++.+|||+|||+|..+..++... +..+++++|+ +.+++.++++++..|+. +|+++.+|+.+..+
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 247 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---- 247 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC----
Confidence 34456667788999999999999999999885 4479999999 99999999999999885 89999999875221
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
..||.|++.-. +.. +... ...++|+++.+.++ ||.++.+...
T Consensus 248 -~~~D~v~~~~v------l~~-----------------~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 248 -RKADAIILSFV------LLN-----------------WPDH-------DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp -SCEEEEEEESC------GGG-----------------SCHH-------HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -CCccEEEEccc------ccC-----------------CCHH-------HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 34999986332 110 1111 12467888888877 6777665544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=84.23 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..++.. + .+++++|+++.+++.++++. ..+..+|+.+.....+ .++||.|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~-~~~fD~v~~ 99 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYE-EEQFDCVIF 99 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSC-TTCEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCC-CCccCEEEE
Confidence 67899999999999999999876 3 79999999999999887654 2578889876432221 267999997
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
.- ++..-+| + ..+|..+.+.++ ||.++.++-
T Consensus 100 ~~------~l~~~~~----------------~----------~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 100 GD------VLEHLFD----------------P----------WAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp ES------CGGGSSC----------------H----------HHHHHHTGGGEEEEEEEEEEEE
T ss_pred CC------hhhhcCC----------------H----------HHHHHHHHHHcCCCCEEEEEeC
Confidence 42 2211111 1 367888888877 688777653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-07 Score=87.92 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---------------------------
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--------------------------- 291 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--------------------------- 291 (441)
..+|.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+.
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 4578899999999999998887652 25899999999999999988765431
Q ss_pred --CcE-EEEeccCCCCCC-CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 013515 292 --ANI-EVLHGDFLNLDP-KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH 367 (441)
Q Consensus 292 --~~v-~~~~~D~~~~~~-~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~ 367 (441)
.++ .+..+|+.+..+ .....++||+|++.- ++..-+ ........+|..
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~------~l~~~~----------------------~~~~~~~~~l~~ 183 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTL------CLDAAC----------------------PDLPAYRTALRN 183 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES------CHHHHC----------------------SSHHHHHHHHHH
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhh------hhhhhc----------------------CChHHHHHHHHH
Confidence 127 899999988654 211125799998531 111000 001123577888
Q ss_pred HhCCCC-CcEEEEEcCCC------------CChhcHHHHHHHhchhcCCCeEEec
Q 013515 368 ALSFPG-VERVVYSTCSI------------HQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 368 a~~~~~-~G~lvYsTCS~------------~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
+.++++ ||.++.++..- ...-+++.+...|+ ..||+++.
T Consensus 184 ~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~aGf~~~~ 235 (265)
T 2i62_A 184 LGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVE---EAGYTIEQ 235 (265)
T ss_dssp HHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHH---HTTCEEEE
T ss_pred HHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHH---HCCCEEEE
Confidence 889887 68877765321 11124556666664 35777654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=86.50 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=83.2
Q ss_pred HhCCCC-CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCC
Q 013515 236 ALAPKP-GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 236 ~l~~~~-g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
.++..+ +.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...++ ++|+++.+|+.+.+...+ ..
T Consensus 173 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~ 248 (352)
T 3mcz_A 173 ELGVFARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG--GA 248 (352)
T ss_dssp TCGGGTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT--CC
T ss_pred hCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC--CC
Confidence 344455 88999999999999999998854 479999999 8899999999999887 469999999987652111 56
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
||+|++- .++.. +..++ ...+|+++.+.++ ||.|+....
T Consensus 249 ~D~v~~~------~vlh~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 249 ADVVMLN------DCLHY-----------------FDARE-------AREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp EEEEEEE------SCGGG-----------------SCHHH-------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccEEEEe------ccccc-----------------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999962 22211 11211 3578888888877 676665543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.4e-06 Score=79.84 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCC---chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--------CC
Q 013515 240 KPGWKVLDACSAP---GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--------KD 308 (441)
Q Consensus 240 ~~g~~VLDl~ag~---G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~--------~~ 308 (441)
.+..+|||+|||+ |..+..+.+. .+..+|+++|+|+.+++.+++++.. ..+++++.+|+.+... ..
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhcc
Confidence 3457999999999 9876555554 4458999999999999999998853 3579999999976421 00
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
-.+.+||.|++. +++..-+|- ....+|..+.+.++ ||.|+.+..+.
T Consensus 153 ~d~~~~d~v~~~------~vlh~~~d~------------------------~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 153 IDFSRPAAIMLV------GMLHYLSPD------------------------VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CCTTSCCEEEET------TTGGGSCTT------------------------THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCCCEEEEEe------chhhhCCcH------------------------HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 012478999752 222111110 01467888888666 78888776554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=84.61 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=64.7
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~ 311 (441)
+...++..+ .+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...|+ ++|+++.+|+.+ +. +
T Consensus 160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~-- 231 (334)
T 2ip2_A 160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV--P-- 231 (334)
T ss_dssp HHHHSCCTT-CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC--C--
T ss_pred HHHhCCCCC-CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC--C--
Confidence 334445555 8999999999999999998864 479999999 9999999999988776 579999999977 22 1
Q ss_pred CCccEEEE
Q 013515 312 SEVRAILL 319 (441)
Q Consensus 312 ~~fD~Il~ 319 (441)
..||+|++
T Consensus 232 ~~~D~v~~ 239 (334)
T 2ip2_A 232 SNGDIYLL 239 (334)
T ss_dssp SSCSEEEE
T ss_pred CCCCEEEE
Confidence 46999995
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=79.70 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+..+|||+|||.|-.+..+. +..+++|+|+|+.+++.+++++..+|. +..+.+.|....++. ++||.|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~----~~~DvvLl 174 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPA----EAGDLALI 174 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCC----CBCSEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCC----CCcchHHH
Confidence 457799999999999888765 568999999999999999999999984 688999999876654 57999975
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.3e-06 Score=82.71 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...|+ ++|++..+|+.. + .+ ..||+|
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~p--~~~D~v 239 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-P--LP--AGAGGY 239 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C--CC--CSCSEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-C--CC--CCCcEE
Confidence 34578999999999999999998864 478999999 9999999999999887 679999999973 2 11 269999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 240 ~~ 241 (332)
T 3i53_A 240 VL 241 (332)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.9e-07 Score=83.64 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+..+|||+|||.|-.++.++.. .+..+++|+|+++.+++.+++|+..+|+. ..+.+.|...-.+. +.+|+||+
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p~----~~~DvaL~ 204 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRLD----EPADVTLL 204 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCCC----SCCSEEEE
T ss_pred CCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCCC----CCcchHHH
Confidence 3669999999999999988765 35689999999999999999999999986 78888898765544 67999985
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-06 Score=78.38 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCCCC-----------
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLNLD----------- 305 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---~~v~~~~~D~~~~~----------- 305 (441)
.+..+||++|+ |+.|+.+|++. .++|+++|.+++..+.+++++++.|+ ++|+++.+|+....
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAELP--GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECc--hHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 35779999997 68888888742 58999999999999999999999994 68999999976531
Q ss_pred ---C-------CCCCCCCccEEEEcCC
Q 013515 306 ---P-------KDPAYSEVRAILLDPS 322 (441)
Q Consensus 306 ---~-------~~~~~~~fD~Il~DpP 322 (441)
+ .....+.||.|++|+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 0 0111267999999985
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.8e-07 Score=90.43 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=72.3
Q ss_pred CCCEEEEEcCC------CchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---CCC
Q 013515 241 PGWKVLDACSA------PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag------~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---~~~ 311 (441)
++.+|||+||| +|+.++.++....+.++|+++|+++.+. ....+|+++++|+.+++... ...
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 56899999999 7888888887654568999999999872 13468999999998865320 001
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||+|++|.- -. . .-+...|..+++.|+ ||.++.+..
T Consensus 287 ~sFDlVisdgs----H~----------------------~-------~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 287 GPFDIVIDDGS----HI----------------------N-------AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CCEEEEEECSC----CC----------------------H-------HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CCccEEEECCc----cc----------------------c-------hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 67999997631 10 0 123567888999888 688877644
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=81.04 Aligned_cols=111 Identities=16% Similarity=0.071 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH-----------------hCC-----------
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL-----------------SGA----------- 291 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~-----------------~g~----------- 291 (441)
.++.+|||+|||+|..+. ++... ...+|+++|+++.+++.++++++. .|.
T Consensus 70 ~~~~~vLDiGcG~G~~~~-l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQL-LSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCCGGG-TTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHH-Hhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 368899999999999443 33322 236999999999999999886542 120
Q ss_pred --CcEEEEeccCCC-CCCCCC--CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 013515 292 --ANIEVLHGDFLN-LDPKDP--AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR 366 (441)
Q Consensus 292 --~~v~~~~~D~~~-~~~~~~--~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~ 366 (441)
..+.++.+|+.+ .+.... ..++||+|++.- ++..-+ .. ..-...+|.
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~------~l~~~~---------------~~-------~~~~~~~l~ 199 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF------CLEAVS---------------PD-------LASFQRALD 199 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES------CHHHHC---------------SS-------HHHHHHHHH
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehh------hhhhhc---------------CC-------HHHHHHHHH
Confidence 025677889987 432211 124699999631 211000 00 112357788
Q ss_pred HHhCCCC-CcEEEEE
Q 013515 367 HALSFPG-VERVVYS 380 (441)
Q Consensus 367 ~a~~~~~-~G~lvYs 380 (441)
.+.++|+ ||.++.+
T Consensus 200 ~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 200 HITTLLRPGGHLLLI 214 (289)
T ss_dssp HHHTTEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEE
Confidence 9999888 6877765
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=92.48 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+-+|||+|||.|..+..||++ +..|+|+|+++.+++.++..+...|.-+|.+.++|+.++..... .++||+|++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALE-EGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCC-TTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhcc-CCCccEEEE
Confidence 4679999999999999999986 36899999999999999999998886689999999988742211 167999984
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=79.95 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=78.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
++..+....++.+|||+|||+|..+..++ .+|+++|+++. ++.++.+|+.+++...
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~--- 113 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQVPLED--- 113 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTSCSCCT---
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEeccccCCCCC---
Confidence 34444445678899999999999887662 68999999987 3467889998866443
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
++||.|++... + +.+| . ..+|..+.+.++ ||.++.+++... ..+.
T Consensus 114 ~~fD~v~~~~~------l-~~~~----------------~----------~~~l~~~~~~L~~gG~l~i~~~~~~-~~~~ 159 (215)
T 2zfu_A 114 ESVDVAVFCLS------L-MGTN----------------I----------RDFLEEANRVLKPGGLLKVAEVSSR-FEDV 159 (215)
T ss_dssp TCEEEEEEESC------C-CSSC----------------H----------HHHHHHHHHHEEEEEEEEEEECGGG-CSCH
T ss_pred CCEeEEEEehh------c-cccC----------------H----------HHHHHHHHHhCCCCeEEEEEEcCCC-CCCH
Confidence 67999997432 1 0111 1 356777777776 788887765432 2255
Q ss_pred HHHHHHhchhcCCCeEEec
Q 013515 391 DVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~~~ 409 (441)
+.+...++ ..+|+++.
T Consensus 160 ~~~~~~l~---~~Gf~~~~ 175 (215)
T 2zfu_A 160 RTFLRAVT---KLGFKIVS 175 (215)
T ss_dssp HHHHHHHH---HTTEEEEE
T ss_pred HHHHHHHH---HCCCEEEE
Confidence 66666664 35787654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=81.35 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHh------cCC-----cEEEEEeCCH---HHHH-----------HHHHHHHH-----
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALM------KGK-----GKIVACELNK---ERVR-----------RLKDTIKL----- 288 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~------~~~-----~~V~a~D~~~---~rl~-----------~l~~~~~~----- 288 (441)
..++.+|||+|+|+|..++.+++.. .+. .+++++|.++ +.+. .++++++.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 3456799999999999999887764 342 5899999987 5544 45555554
Q ss_pred -------h--CCCcEEEEeccCCCCCCCCCC--CCCccEEEEcC--CCCCCcccccccCccCCCCCCCCCCCcccHHHHH
Q 013515 289 -------S--GAANIEVLHGDFLNLDPKDPA--YSEVRAILLDP--SCSGSGTAAERLDHLLPSHASGHTADPTEMERLN 355 (441)
Q Consensus 289 -------~--g~~~v~~~~~D~~~~~~~~~~--~~~fD~Il~Dp--PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~ 355 (441)
+ |..+++++.+|+.+..+..+. ...||.|++|+ |+ ++|+. |+
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~-------~~p~l-------------w~----- 192 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA-------KNPDM-------------WT----- 192 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT-------TCGGG-------------CC-----
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc-------cChhh-------------cC-----
Confidence 1 224688999999875433211 12799999998 53 35543 22
Q ss_pred HHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 356 KLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 356 ~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.+++....+.++ ||+++.-||+ ..|.+-|.. .+|++..
T Consensus 193 ------~~~l~~l~~~L~pGG~l~tysaa-------~~vrr~L~~---aGF~v~~ 231 (257)
T 2qy6_A 193 ------QNLFNAMARLARPGGTLATFTSA-------GFVRRGLQE---AGFTMQK 231 (257)
T ss_dssp ------HHHHHHHHHHEEEEEEEEESCCB-------HHHHHHHHH---HTEEEEE
T ss_pred ------HHHHHHHHHHcCCCcEEEEEeCC-------HHHHHHHHH---CCCEEEe
Confidence 356777777777 6776632332 467777753 4888754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=9.5e-06 Score=77.27 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 241 PGWKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 241 ~g~~VLDl~ag~--G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
....|||+|||+ ++.+..+++...+..+|+++|.|+.|++.+++++...+..++.++++|+.++
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~ 143 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP 143 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence 347999999997 6667777777666789999999999999999988755445799999999885
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-06 Score=85.83 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+++|++|||+||+|||.|..+++. .++|+|+|+.+ +...+ ....+|+++.+|+..+.+.. .+||.|+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-----l~~~l--~~~~~V~~~~~d~~~~~~~~---~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-----MAQSL--MDTGQVTWLREDGFKFRPTR---SNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-----CCHHH--HTTTCEEEECSCTTTCCCCS---SCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-----cChhh--ccCCCeEEEeCccccccCCC---CCcCEEE
Confidence 578999999999999999998876 47999999863 11112 22368999999998877653 6799999
Q ss_pred EcCCCCCC
Q 013515 319 LDPSCSGS 326 (441)
Q Consensus 319 ~DpPCSg~ 326 (441)
+|.-|.-.
T Consensus 276 sDm~~~p~ 283 (375)
T 4auk_A 276 CDMVEKPA 283 (375)
T ss_dssp ECCSSCHH
T ss_pred EcCCCChH
Confidence 99987433
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.5e-06 Score=78.28 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCch----HHHHHHHHhcC---CcEEEEEeCCHHHHHHHHHHHH--------------Hh---------C
Q 013515 241 PGWKVLDACSAPGN----KTVHLAALMKG---KGKIVACELNKERVRRLKDTIK--------------LS---------G 290 (441)
Q Consensus 241 ~g~~VLDl~ag~G~----kt~~la~~~~~---~~~V~a~D~~~~rl~~l~~~~~--------------~~---------g 290 (441)
++.+|||+|||+|- .+..+++.++. ..+|+|+|+|+.+++.+++++- ++ |
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 55666666542 2589999999999999998741 10 1
Q ss_pred ---C-----CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHH
Q 013515 291 ---A-----ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQK 362 (441)
Q Consensus 291 ---~-----~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~ 362 (441)
+ .+|.+.++|..+.+... .++||+|++ .. ++-. ..+ ..|.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~--~~~fDlI~c----rn--vliy-----------------f~~-------~~~~ 232 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNV--PGPFDAIFC----RN--VMIY-----------------FDK-------TTQE 232 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCC--CCCEEEEEE----CS--SGGG-----------------SCH-------HHHH
T ss_pred ceeechhhcccCeEEecccCCCCCCc--CCCeeEEEE----CC--chHh-----------------CCH-------HHHH
Confidence 1 36899999998743221 267999996 21 2110 111 2368
Q ss_pred HHHHHHhCCCC-CcEEEE
Q 013515 363 KALRHALSFPG-VERVVY 379 (441)
Q Consensus 363 ~lL~~a~~~~~-~G~lvY 379 (441)
+++....+.|+ ||.|+.
T Consensus 233 ~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 233 DILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp HHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 89999998887 566654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-06 Score=79.17 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~ 285 (441)
.|.+|||+|||+|+.+..+++. +..+|+|+|+++.+++.++++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~ 79 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRS 79 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHT
T ss_pred CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHh
Confidence 4779999999999999999886 335999999999999986654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.9e-07 Score=83.74 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHH--hcC-CcEEEEEeC--CHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAAL--MKG-KGKIVACEL--NKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYS 312 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~--~~~-~~~V~a~D~--~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~ 312 (441)
++||++|+|+|||||+.+..++++ ++. .|.++|+|+ .+-.. ...|+.-+.+..+ |+.++.. .
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~~~-----~ 138 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYKPS-----E 138 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGSCC-----C
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCCCC-----C
Confidence 578999999999999999999887 433 467778773 22100 0024444566667 9987442 4
Q ss_pred CccEEEEcCCCCCCcc
Q 013515 313 EVRAILLDPSCSGSGT 328 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~ 328 (441)
++|+||+|.--+ +|.
T Consensus 139 ~~DvVLSDMAPn-SG~ 153 (269)
T 2px2_A 139 ISDTLLCDIGES-SPS 153 (269)
T ss_dssp CCSEEEECCCCC-CSC
T ss_pred CCCEEEeCCCCC-CCc
Confidence 699999998666 664
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.4e-07 Score=90.19 Aligned_cols=105 Identities=9% Similarity=0.018 Sum_probs=70.8
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE--EEeccCCCCCCCCCCCC
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE--VLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~--~~~~D~~~~~~~~~~~~ 312 (441)
..+.+.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++ |+..+. +...+...++..+ +
T Consensus 101 ~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~---~ 170 (416)
T 4e2x_A 101 ATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTE---G 170 (416)
T ss_dssp HTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHH---C
T ss_pred HHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCC---C
Confidence 3455678999999999999999999875 35999999999999988765 554322 1122333332222 6
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+||+|++. +++-+-+| ...+|+.+.++++ ||.++.++
T Consensus 171 ~fD~I~~~------~vl~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 171 PANVIYAA------NTLCHIPY--------------------------VQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp CEEEEEEE------SCGGGCTT--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEEEC------ChHHhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEe
Confidence 79999863 33322111 1467788888777 68877764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=80.65 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-----CCCCccEE
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-----AYSEVRAI 317 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-----~~~~fD~I 317 (441)
.+|+|+|||.||.++-+... +-..|+|+|+++.+++..+.|. .+..++++|+.++....- ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 47999999999999988765 3356789999999999988875 345678899988753210 12579999
Q ss_pred EEcCCCCCCccccc
Q 013515 318 LLDPSCSGSGTAAE 331 (441)
Q Consensus 318 l~DpPCSg~G~~~~ 331 (441)
+.+|||.+.....+
T Consensus 76 ~ggpPCQ~fS~ag~ 89 (376)
T 3g7u_A 76 IGGPPCQGFSSIGK 89 (376)
T ss_dssp EECCCCCTTC----
T ss_pred EecCCCCCcccccC
Confidence 99999998876543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=78.37 Aligned_cols=112 Identities=16% Similarity=0.065 Sum_probs=75.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~ 310 (441)
.++..++..++.+|||+|||+|..+..+++..+ ..+++++|+ +..+. +++++..+. ++|+++.+|+....
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~----- 245 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV----- 245 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC-----
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC-----
Confidence 344556677889999999999999999998864 578999999 44444 333333444 46999999996211
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.+||+|++-- ++.. +... ...++|+++.+.++ ||+|+.....
T Consensus 246 -p~~D~v~~~~------vlh~-----------------~~d~-------~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 246 -PHADVHVLKR------ILHN-----------------WGDE-------DSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp -CCCSEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred -CCCcEEEEeh------hccC-----------------CCHH-------HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1689998521 2211 1111 12478889888877 6877665543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-05 Score=77.81 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=62.3
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
+..++..+..+|+|+|||+|..+..+++..+ ..+++..|. +..++.++++++..+.++|+++.+|+...+. ..
T Consensus 172 ~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-----~~ 244 (353)
T 4a6d_A 172 LTAFDLSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-----PE 244 (353)
T ss_dssp HHSSCGGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-----CC
T ss_pred HHhcCcccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-----CC
Confidence 3344556788999999999999999999864 468888887 8899999998877677899999999976432 34
Q ss_pred ccEEEE
Q 013515 314 VRAILL 319 (441)
Q Consensus 314 fD~Il~ 319 (441)
+|+|++
T Consensus 245 ~D~~~~ 250 (353)
T 4a6d_A 245 ADLYIL 250 (353)
T ss_dssp CSEEEE
T ss_pred ceEEEe
Confidence 688885
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=2.4e-05 Score=76.65 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+-+|+|+|||.||.++.+... +-..|+++|+++.+++..+.|.... .++|+.++.... ...+|+|+.+|
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~-------~~~Di~~~~~~~--~~~~D~l~~gp 79 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKT--IPDHDILCAGF 79 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGG--SCCCSEEEEEC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC-------CcCCHHHcCHhh--CCCCCEEEECC
Confidence 568999999999999888764 3467899999999999999987421 168888876543 24689999999
Q ss_pred CCCCCccccc
Q 013515 322 SCSGSGTAAE 331 (441)
Q Consensus 322 PCSg~G~~~~ 331 (441)
||.+.....+
T Consensus 80 PCQ~fS~ag~ 89 (327)
T 2c7p_A 80 PCQAFSISGK 89 (327)
T ss_dssp CCTTTCTTSC
T ss_pred CCCCcchhcc
Confidence 9999877644
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.88 E-value=5.6e-06 Score=81.80 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
.+|+|++||.||.++.+...-.....|+++|+++.+++..+.|.. +..++++|+.++....-....+|+|+.+||
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 479999999999999887751112479999999999999998864 234678999887532100016899999999
Q ss_pred CCCCcccc
Q 013515 323 CSGSGTAA 330 (441)
Q Consensus 323 CSg~G~~~ 330 (441)
|.+..+..
T Consensus 78 Cq~fS~ag 85 (343)
T 1g55_A 78 CQPFTRIG 85 (343)
T ss_dssp --------
T ss_pred CcchhhcC
Confidence 99887754
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-06 Score=77.77 Aligned_cols=82 Identities=22% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~I 317 (441)
++++.+|||+|||||+.+..++... +...|+++|+.......... .+..|.+.+.+... |+..+. ..++|+|
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv~~l~-----~~~~DvV 160 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDVFNME-----VIPGDTL 160 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCGGGSC-----CCCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccc-cccCCCceEEeeCCcchhhcC-----CCCcCEE
Confidence 4678899999999999999888654 44688999997542111100 01123222333322 433322 1679999
Q ss_pred EEcCCCCCCcc
Q 013515 318 LLDPSCSGSGT 328 (441)
Q Consensus 318 l~DpPCSg~G~ 328 (441)
|+|.--+ +|.
T Consensus 161 LSDmApn-sG~ 170 (282)
T 3gcz_A 161 LCDIGES-SPS 170 (282)
T ss_dssp EECCCCC-CSC
T ss_pred EecCccC-CCC
Confidence 9997766 774
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.3e-05 Score=75.75 Aligned_cols=83 Identities=17% Similarity=0.078 Sum_probs=50.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+++.+|||+|||||+.+..++... +...++++|+.......... ....|. ++..+..++...... ..+||.|+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~~l~---~~~~DlVl 145 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIHRLE---PVKCDTLL 145 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTTTSC---CCCCSEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceehhcC---CCCccEEE
Confidence 4678899999999999999887653 34678888887432100000 011122 444455554332222 25799999
Q ss_pred EcCCCCCCcc
Q 013515 319 LDPSCSGSGT 328 (441)
Q Consensus 319 ~DpPCSg~G~ 328 (441)
+|.--+ +|.
T Consensus 146 sD~apn-sG~ 154 (277)
T 3evf_A 146 CDIGES-SSS 154 (277)
T ss_dssp ECCCCC-CSC
T ss_pred ecCccC-cCc
Confidence 998655 664
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.2e-05 Score=74.03 Aligned_cols=122 Identities=8% Similarity=0.090 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHhC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK--------------------------ERVRRLKDTIKLSG 290 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~----~~~~V~a~D~~~--------------------------~rl~~l~~~~~~~g 290 (441)
....||++|++.|+.++.|+..+. +.++|+++|..+ .+++.+++++++.|
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 355999999999999999998774 357999999641 15788999999999
Q ss_pred C--CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 013515 291 A--ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 368 (441)
Q Consensus 291 ~--~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a 368 (441)
+ ++|+++.||+.+..+..+ .++||.|++|.-- + +-....|+..
T Consensus 186 l~~~~I~li~Gda~etL~~~~-~~~~d~vfIDaD~---y-------------------------------~~~~~~Le~~ 230 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAP-IDTLAVLRMDGDL---Y-------------------------------ESTWDTLTNL 230 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCC-CCCEEEEEECCCS---H-------------------------------HHHHHHHHHH
T ss_pred CCcCceEEEEeCHHHHHhhCC-CCCEEEEEEcCCc---c-------------------------------ccHHHHHHHH
Confidence 8 789999999987655432 2579999999641 0 0113567778
Q ss_pred hCCCC-CcEEEEEcCCCCChhcHHHHHHHhc
Q 013515 369 LSFPG-VERVVYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 369 ~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~ 398 (441)
+.+++ ||.||.=-....+.+ ..-|.+|++
T Consensus 231 ~p~L~pGGiIv~DD~~~~~G~-~~Av~Ef~~ 260 (282)
T 2wk1_A 231 YPKVSVGGYVIVDDYMMCPPC-KDAVDEYRA 260 (282)
T ss_dssp GGGEEEEEEEEESSCTTCHHH-HHHHHHHHH
T ss_pred HhhcCCCEEEEEcCCCCCHHH-HHHHHHHHH
Confidence 88776 666666444323433 455666664
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.1e-05 Score=73.78 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~Il 318 (441)
.+|.+|||+|||||+++-.+++.+ +...|+++|+.......... ....+.+.+.+..+ |+..+. ...+|.|+
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~l~-----~~~~DlVl 152 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFTMP-----TEPSDTLL 152 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTTSC-----CCCCSEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccCCceEEeecCceeeecC-----CCCcCEEe
Confidence 579999999999999999998764 34678999997431100000 00112222333322 333322 15799999
Q ss_pred EcCCCCCCcc
Q 013515 319 LDPSCSGSGT 328 (441)
Q Consensus 319 ~DpPCSg~G~ 328 (441)
+|.-.+ +|.
T Consensus 153 sD~APn-sG~ 161 (300)
T 3eld_A 153 CDIGES-SSN 161 (300)
T ss_dssp ECCCCC-CSS
T ss_pred ecCcCC-CCC
Confidence 999888 884
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00048 Score=66.10 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=67.6
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEeccCCCCCCCCCC
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---AANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g---~~~v~~~~~D~~~~~~~~~~ 310 (441)
++.+. ..+||=+|.|.|+.+..+.+.- +..+|+.+|+++..++.+++.+... | -++++++.+|+..+.....
T Consensus 79 ~~~p~-pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~- 155 (294)
T 3o4f_A 79 LAHGH-AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTS- 155 (294)
T ss_dssp HHSSC-CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSS-
T ss_pred hhCCC-CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhcc-
Confidence 34443 5699999999999998887753 3469999999999999999988653 2 2579999999998875543
Q ss_pred CCCccEEEEcCCC
Q 013515 311 YSEVRAILLDPSC 323 (441)
Q Consensus 311 ~~~fD~Il~DpPC 323 (441)
++||+|++|.+-
T Consensus 156 -~~yDvIi~D~~d 167 (294)
T 3o4f_A 156 -QTFDVIISDCTD 167 (294)
T ss_dssp -CCEEEEEESCCC
T ss_pred -ccCCEEEEeCCC
Confidence 789999999984
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.4e-05 Score=75.98 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+|+++.+|+.+ +. ..||+|+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~v~ 272 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SV-----PQGDAMI 272 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC-----CCEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CC-----CCCCEEE
Confidence 5668899999999999999999886 4478999999 888887654 2579999999976 32 2289998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 273 ~ 273 (372)
T 1fp1_D 273 L 273 (372)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.68 E-value=3.1e-06 Score=80.53 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~fD~Il~ 319 (441)
.+..+||+++|+|..++.+.+ +..+++.+|.++..++.+++|++. .+++++++.|+..... ..+...+||.||+
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi 165 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFI 165 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred cCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence 366799999999999987655 347999999999999999999975 3579999999754321 1111256999999
Q ss_pred cCCC
Q 013515 320 DPSC 323 (441)
Q Consensus 320 DpPC 323 (441)
|||.
T Consensus 166 DPPY 169 (283)
T 2oo3_A 166 DPSY 169 (283)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9996
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=6.8e-05 Score=74.57 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+|+++.+|+.+ +.. .. |+|+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p----~~-D~v~ 266 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVP----KG-DAIF 266 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCC----CC-SEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCC----CC-CEEE
Confidence 4567899999999999999999886 4478999999 8888766532 579999999986 222 22 8887
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
+-- ++.. |..++ ..++|+++.+.++ ||+|+.....+
T Consensus 267 ~~~------vlh~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~ 303 (368)
T 3reo_A 267 IKW------ICHD-----------------WSDEH-------CLKLLKNCYAALPDHGKVIVAEYIL 303 (368)
T ss_dssp EES------CGGG-----------------BCHHH-------HHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred Eec------hhhc-----------------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 622 1210 11221 1467888888776 68777665544
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=72.62 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+ +.. .. |+|+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p----~~-D~v~ 264 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EVP----SG-DTIL 264 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCC----CC-SEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CCC----CC-CEEE
Confidence 56788999999999999999998864 478999999 888776653 2579999999987 322 12 8887
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
+-- ++.. |..++ -.++|+++.+.++ ||+|+.....+
T Consensus 265 ~~~------vlh~-----------------~~d~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 265 MKW------ILHD-----------------WSDQH-------CATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp EES------CGGG-----------------SCHHH-------HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred ehH------Hhcc-----------------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 521 1210 11222 1467888888766 67776655443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.9e-05 Score=70.53 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~I 317 (441)
+++|+.|+|+|||||+.+-.++... +..+|+|+|+...-.+. -..++.+|-..|++..+ |+..+.+ .++|.|
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~-----~~~Dtl 148 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP-----EKCDTL 148 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC-----CCCSEE
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC-----ccccEE
Confidence 5789999999999999999888775 34689999997532210 00123466678999999 9866654 458999
Q ss_pred EEcCCC
Q 013515 318 LLDPSC 323 (441)
Q Consensus 318 l~DpPC 323 (441)
|+|--=
T Consensus 149 lcDIge 154 (267)
T 3p8z_A 149 LCDIGE 154 (267)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=75.70 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCchH---HHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~k---t~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+..|||+|||+|-. ++..++..+...+|+|+|.++ +...+++..+.+|. +.|+++++|.+++... +++|+|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADII 432 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCEE
Confidence 45799999999988 555555543334899999997 56677788888888 5699999999998754 689999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC--ChhcHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH--QVENEDVIK 394 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~--~~ENe~vV~ 394 (441)
+...= |.+.+ + +.. .+.|.++-++|+ +|.++=+.|+++ |-+.+..-.
T Consensus 433 VSEwM--G~fLl--~-----------------------E~m---levL~Ardr~LKPgGimiPs~atlyiapi~~~~l~~ 482 (637)
T 4gqb_A 433 VSELL--GSFAD--N-----------------------ELS---PECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYN 482 (637)
T ss_dssp ECCCC--BTTBG--G-----------------------GCH---HHHHHHHGGGEEEEEEEESCEEEEEEEEEECHHHHH
T ss_pred EEEcC--ccccc--c-----------------------cCC---HHHHHHHHHhcCCCcEEccccceEEEEEecCHHHHH
Confidence 97654 22211 0 000 256777778888 677776666665 455555444
Q ss_pred HH
Q 013515 395 SV 396 (441)
Q Consensus 395 ~~ 396 (441)
+.
T Consensus 483 e~ 484 (637)
T 4gqb_A 483 EV 484 (637)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.51 E-value=7.8e-05 Score=79.09 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=83.6
Q ss_pred CCEEEEEcCCCchHHHHH---HHHhc---------CCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC-
Q 013515 242 GWKVLDACSAPGNKTVHL---AALMK---------GKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK- 307 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~l---a~~~~---------~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~- 307 (441)
+..|||+|||+|-.+... ++..+ ...+|+|+|.++.....++.... +|.. .|+++.+|.+++...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 458999999999996433 22222 23599999999988877776665 6774 599999999988641
Q ss_pred -CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 308 -DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 308 -~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
....+++|+|+...- |.+-.+ +++.+.|..+-++|+ +|.++=+.|+++
T Consensus 489 ~~~~~ekVDIIVSElm----Gsfl~n--------------------------EL~pe~Ld~v~r~Lkp~Gi~iP~~~t~y 538 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL----GSFGDN--------------------------ELSPECLDGVTGFLKPTTISIPQKYTSY 538 (745)
T ss_dssp HHTTCCCCSEEEECCC----BTTBGG--------------------------GSHHHHHHTTGGGSCTTCEEESCEEEEE
T ss_pred ccCCCCcccEEEEecc----ccccch--------------------------hccHHHHHHHHHhCCCCcEEECCccEEE
Confidence 000268999998776 322110 123467777777887 687776666655
Q ss_pred --ChhcHHHHHHHh
Q 013515 386 --QVENEDVIKSVL 397 (441)
Q Consensus 386 --~~ENe~vV~~~l 397 (441)
|-+.+..-.++.
T Consensus 539 laPi~~~~l~~~v~ 552 (745)
T 3ua3_A 539 VKPIMSTHIHQTIK 552 (745)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEecCHHHHHHHH
Confidence 556665555443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.40 E-value=5.3e-05 Score=66.67 Aligned_cols=59 Identities=20% Similarity=0.080 Sum_probs=47.1
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCCC
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSE 313 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~---~~~~~~~ 313 (441)
++..+|++|||++||. +++|+++.|++.++++... ++.+.++|+.+++. .+ ++
T Consensus 8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~---~~ 63 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKE---SS 63 (176)
T ss_dssp TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCS---SC
T ss_pred cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCC---CC
Confidence 4578899999999985 2389999999999887532 47889999988764 32 68
Q ss_pred ccEEEE
Q 013515 314 VRAILL 319 (441)
Q Consensus 314 fD~Il~ 319 (441)
||.|++
T Consensus 64 fD~V~~ 69 (176)
T 2ld4_A 64 FDIILS 69 (176)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 999995
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00023 Score=68.66 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~-V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~I 317 (441)
..+-+|+|+|||.||.+.-+... +-... |+++|+++.+++..+.|.. ...+..+|+.++...+ +....+|+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcccCCcCEE
Confidence 34668999999999999887664 21122 6999999999998887742 3357789998876432 112468999
Q ss_pred EEcCCCCCCcccc
Q 013515 318 LLDPSCSGSGTAA 330 (441)
Q Consensus 318 l~DpPCSg~G~~~ 330 (441)
+..|||.+.....
T Consensus 88 ~ggpPCQ~fS~ag 100 (295)
T 2qrv_A 88 IGGSPCNDLSIVN 100 (295)
T ss_dssp EECCCCGGGBTTC
T ss_pred EecCCCccccccC
Confidence 9999999877653
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=71.34 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKI-VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V-~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.-+|+|++||.||.+.-+...--+...| .|+|+++.+++..+.|... . ++++|+.++....-....+|+|+..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---~---~~~~DI~~~~~~~i~~~~~Dil~gg 83 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---E---VQVKNLDSISIKQIESLNCNTWFMS 83 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---C---CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---C---cccCChhhcCHHHhccCCCCEEEec
Confidence 3489999999999998876641112356 7999999999999988632 1 5678988876432101268999999
Q ss_pred CCCCCC
Q 013515 321 PSCSGS 326 (441)
Q Consensus 321 pPCSg~ 326 (441)
|||.+.
T Consensus 84 pPCQ~f 89 (327)
T 3qv2_A 84 PPCQPY 89 (327)
T ss_dssp CCCTTC
T ss_pred CCccCc
Confidence 999998
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=71.45 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=61.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+|+|||.||.+.-+...--+...|.|+|+++.+.+..+.|.. ...++++|+.++....-....+|+|+..|||
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPC 79 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPPC 79 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCCC
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCCC
Confidence 79999999999998887651111357899999999999888863 2336688988876432111268999999999
Q ss_pred CCCccccc
Q 013515 324 SGSGTAAE 331 (441)
Q Consensus 324 Sg~G~~~~ 331 (441)
.+.....+
T Consensus 80 Q~fS~ag~ 87 (333)
T 4h0n_A 80 QPFTRNGK 87 (333)
T ss_dssp CCSEETTE
T ss_pred cchhhhhh
Confidence 98866543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00023 Score=69.45 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
.+|+|++||.||.++-+-+. +-..|.|+|+++.+++..+.|. + . .++.+|+.++.... ...+|+|+.-||
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~---~--~-~~~~~DI~~i~~~~--~~~~D~l~ggpP 70 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S--A-KLIKGDISKISSDE--FPKCDGIIGGPP 70 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC---C--S-EEEESCGGGCCGGG--SCCCSEEECCCC
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C--C-CcccCChhhCCHhh--CCcccEEEecCC
Confidence 37999999999999877654 3346789999999999988874 2 2 46789999887543 367899999999
Q ss_pred CCCCccccc
Q 013515 323 CSGSGTAAE 331 (441)
Q Consensus 323 CSg~G~~~~ 331 (441)
|.+..+..+
T Consensus 71 CQ~fS~ag~ 79 (331)
T 3ubt_Y 71 SQSWSEGGS 79 (331)
T ss_dssp GGGTEETTE
T ss_pred CCCcCCCCC
Confidence 999876644
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00035 Score=68.75 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+ +. ..||+|+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----p~~D~v~ 251 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SI-----PNADAVL 251 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CC-----CCCSEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CC-----CCccEEE
Confidence 35678999999999999999998764 468999999 999887764 2469999999975 21 2389998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 252 ~ 252 (352)
T 1fp2_A 252 L 252 (352)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00077 Score=64.89 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g 290 (441)
.+|+.|||.|||+|..+..++.+ ..+++++|+++.+++.++++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 68999999999999988876654 2589999999999999999998763
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=61.64 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCc-hHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE-
Q 013515 240 KPGWKVLDACSAPG-NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI- 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G-~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I- 317 (441)
.++++|||+|||+| ..+..|++.. ...|+|+|+++..+. +++.|+.+.... .+..||.|
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~---------------~v~dDiF~P~~~--~Y~~~DLIY 94 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG---------------IVRDDITSPRME--IYRGAALIY 94 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT---------------EECCCSSSCCHH--HHTTEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc---------------eEEccCCCCccc--ccCCcCEEE
Confidence 45789999999999 5888888742 357999999987666 788898874432 12579999
Q ss_pred EEcCC
Q 013515 318 LLDPS 322 (441)
Q Consensus 318 l~DpP 322 (441)
.+.||
T Consensus 95 sirPP 99 (153)
T 2k4m_A 95 SIRPP 99 (153)
T ss_dssp EESCC
T ss_pred EcCCC
Confidence 89999
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0024 Score=60.60 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~I 317 (441)
+++++.|||+||||||.+-.++... +...|+|+|+...-.+. -..++.+|-..|.+..+ |+..+.+ .++|.|
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~-----~~~D~i 164 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS-----ECCDTL 164 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC-----CCCSEE
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC-----CCCCEE
Confidence 5688899999999999999887764 34689999997541100 00012344445888887 8877765 458999
Q ss_pred EEcCCCCCCc
Q 013515 318 LLDPSCSGSG 327 (441)
Q Consensus 318 l~DpPCSg~G 327 (441)
++|.- -.+|
T Consensus 165 vcDig-eSs~ 173 (321)
T 3lkz_A 165 LCDIG-ESSS 173 (321)
T ss_dssp EECCC-CCCS
T ss_pred EEECc-cCCC
Confidence 99998 4444
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00073 Score=64.07 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=51.4
Q ss_pred CCCCCEEEEEcC------CCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 239 PKPGWKVLDACS------APGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 239 ~~~g~~VLDl~a------g~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+.-|++|||+|| +||+ ..+.+. .+. +.|+++|+.+--. ..+ .++.+|...+...
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS--~VLr~~-~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~~---- 167 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGT--AVLRQW-LPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVHTA---- 167 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHH-SCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEEES----
T ss_pred ecCCCEEEeCCCCCCCCCCCcH--HHHHHh-CCCCcEEEEeeCccccc-----------CCC-eEEEccccccccC----
Confidence 446999999997 9998 334444 555 5999999986210 123 3589997664432
Q ss_pred CCccEEEEcCCCCCCcc
Q 013515 312 SEVRAILLDPSCSGSGT 328 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~ 328 (441)
.+||+||.|.-..-+|.
T Consensus 168 ~k~DLVISDMAPNtTG~ 184 (344)
T 3r24_A 168 NKWDLIISDMYDPRTKH 184 (344)
T ss_dssp SCEEEEEECCCCTTSCS
T ss_pred CCCCEEEecCCCCcCCc
Confidence 67999999988888887
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=66.74 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=54.9
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHH-HHhcCCcEEEEEeCCHHHHHHHHHHHHH---hCC-CcEEEEeccCC
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIKL---SGA-ANIEVLHGDFL 302 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la-~~~~~~~~V~a~D~~~~rl~~l~~~~~~---~g~-~~v~~~~~D~~ 302 (441)
+.+.+|+.|+|+||+.|..|..++ ...++.++|+|+|.++...+.+++|++. .+. ++|++++.-+.
T Consensus 222 ~~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 222 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred cccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 356789999999999999999988 4544458999999999999999999998 356 78888765443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0007 Score=67.10 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC---C-----CcEEEEeccCCCCCCCC-CC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---A-----ANIEVLHGDFLNLDPKD-PA 310 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g---~-----~~v~~~~~D~~~~~~~~-~~ 310 (441)
.+..+||=+|.|-|+....+.+. . ..+|+.+|+++..++.+++.+.... . ++++++.+|+..+.... ..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 35689999999999998888765 3 4799999999999999998764321 1 34889999997665210 01
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE-EcCCCCChh
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY-STCSIHQVE 388 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY-sTCS~~~~E 388 (441)
..+||+|++|.+-...+.. |. .. ......++.++.+.+.|+ +|.+|. +.|-..+ +
T Consensus 282 ~~~yDvIIvDl~D~~~s~~---p~------------------g~-a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~-~ 338 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTS---PE------------------ED-STWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT-E 338 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC--------------------------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCH-H
T ss_pred cCceeEEEECCCCCcccCc---cc------------------Cc-chHHHHHHHHHHHHHhcCCCCEEEEecCCCcch-h
Confidence 2579999999763221110 00 00 012345677788877777 687765 3444333 3
Q ss_pred cHHHHHHHh
Q 013515 389 NEDVIKSVL 397 (441)
Q Consensus 389 Ne~vV~~~l 397 (441)
.-..+.+.|
T Consensus 339 ~~~~i~~tl 347 (381)
T 3c6k_A 339 ALSLYEEQL 347 (381)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 323344444
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0016 Score=64.27 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=62.9
Q ss_pred cCcccccchh-hHHHHHHhCCCC------CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 220 NGCVFLQGKA-SSMVAAALAPKP------GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 220 ~g~~~~Qd~s-s~l~~~~l~~~~------g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
-|+-.+.|.. ..-++..+++.+ ++.|||+|.|+|..|..|++... ..+|+|+|+++..+..+++.+ . .+
T Consensus 30 lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~--~~ 105 (353)
T 1i4w_A 30 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E--GS 105 (353)
T ss_dssp GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T--TS
T ss_pred CCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c--CC
Confidence 3443444443 455666777663 69999999999999999998643 368999999999999998876 2 36
Q ss_pred cEEEEeccCCCCC
Q 013515 293 NIEVLHGDFLNLD 305 (441)
Q Consensus 293 ~v~~~~~D~~~~~ 305 (441)
+++++++|+.++.
T Consensus 106 ~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 106 PLQILKRDPYDWS 118 (353)
T ss_dssp SCEEECSCTTCHH
T ss_pred CEEEEECCccchh
Confidence 8999999997664
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=65.04 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+ +. ..||+|+
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~v~ 256 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SI-----PSADAVL 256 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CC-----CCCSEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CC-----CCceEEE
Confidence 34678999999999999999998864 478999999 788876653 3569999999976 31 2489998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 257 ~ 257 (358)
T 1zg3_A 257 L 257 (358)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=67.90 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------------- 308 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------------- 308 (441)
.-+|+|+|||.||.+.-+... +-..|+|+|+++.+++..+.|.... ....++++|+.++....
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhh
Confidence 458999999999999887653 2235899999999999888875211 22345678887765321
Q ss_pred -CCCCCccEEEEcCCCCCCcccc
Q 013515 309 -PAYSEVRAILLDPSCSGSGTAA 330 (441)
Q Consensus 309 -~~~~~fD~Il~DpPCSg~G~~~ 330 (441)
.....+|+|+..|||.+..+..
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~FS~AG 186 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAG 186 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----
T ss_pred hhcCCCCCEEEecCCCcchhhhC
Confidence 0124689999999999887654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=60.42 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=40.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~ 291 (441)
.+|+.|||.+||+|..+.....+ ..+++++|+++..++.++++++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 68999999999999877665544 26899999999999999999987654
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0097 Score=59.67 Aligned_cols=88 Identities=10% Similarity=0.006 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcE----EEEEeCCHHHHHHHHHHHHHhCCC--------------------------
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGK----IVACELNKERVRRLKDTIKLSGAA-------------------------- 292 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~----V~a~D~~~~rl~~l~~~~~~~g~~-------------------------- 292 (441)
-+|+|+|||.||.+..+-+.-.+-.. |.++|+++.+++..+.|....+.-
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~ 90 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIK 90 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHH
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccccc
Confidence 48999999999999888765211123 889999999999998887532100
Q ss_pred -----cEE----------EEeccCCCCCCCCCCCCCccEEEEcCCCCCCccccc
Q 013515 293 -----NIE----------VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 331 (441)
Q Consensus 293 -----~v~----------~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~ 331 (441)
.+. ...+|+.++....- .+.+|+|+.-|||.+.....+
T Consensus 91 ~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~i-p~~vDll~ggpPCQ~fS~ag~ 143 (403)
T 4dkj_A 91 KINNTIKASYLNYAKKHFNNLFDIKKVNKDNF-PKNIDIFTYSFPCQDLSVQGL 143 (403)
T ss_dssp HHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTS-CSSCSEEEECCCCTTTCTTSC
T ss_pred cccHHHHHHHHhhcccCCCcccchhhcCHhhC-CCCCcEEEEeCCCCCHHHhCC
Confidence 000 03478877765431 135799999999988776543
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.023 Score=63.05 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC------------CCC-C
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL------------DPK-D 308 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~------------~~~-~ 308 (441)
.-+++|++||.||.++-+... +-...|.|+|+++.+.+..+.|.. +..++.+|+..+ ... .
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhhhhc
Confidence 347999999999999888664 111357899999999998887742 334555554321 111 1
Q ss_pred CCCCCccEEEEcCCCCCCccc
Q 013515 309 PAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~ 329 (441)
+..+.+|+|+.-|||.+....
T Consensus 614 p~~~~vDll~GGpPCQ~FS~a 634 (1002)
T 3swr_A 614 PQKGDVEMLCGGPPCQGFSGM 634 (1002)
T ss_dssp CCTTTCSEEEECCCCTTCCSS
T ss_pred ccCCCeeEEEEcCCCcchhhh
Confidence 112468999999999987654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.044 Score=52.65 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCchHHHHHH---HHhcCCcE--EEEEeCCH--------HHHHHHHH-HHHHhC---CCc--EEEEeccC
Q 013515 241 PGWKVLDACSAPGNKTVHLA---ALMKGKGK--IVACELNK--------ERVRRLKD-TIKLSG---AAN--IEVLHGDF 301 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la---~~~~~~~~--V~a~D~~~--------~rl~~l~~-~~~~~g---~~~--v~~~~~D~ 301 (441)
+.-+|||+|-|+|.-++... ...++..+ .+++|.++ .-+..+.+ ...... -.+ +.+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34579999999998654332 22344444 46777531 11222222 222221 122 45678898
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
.+..+... ...||+|++|+=. -+++||. |+ .+++....++++ ||+++--
T Consensus 176 ~~~l~~l~-~~~~Da~flDgFs-----P~kNPeL-------------Ws-----------~e~f~~l~~~~~pgg~laTY 225 (308)
T 3vyw_A 176 RKRIKEVE-NFKADAVFHDAFS-----PYKNPEL-------------WT-----------LDFLSLIKERIDEKGYWVSY 225 (308)
T ss_dssp HHHGGGCC-SCCEEEEEECCSC-----TTTSGGG-------------GS-----------HHHHHHHHTTEEEEEEEEES
T ss_pred HHHHhhhc-ccceeEEEeCCCC-----cccCccc-------------CC-----------HHHHHHHHHHhCCCcEEEEE
Confidence 76544322 1469999999721 1357775 33 367888888777 6777655
Q ss_pred cCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 381 TCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 381 TCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
||+ ..|.+-|. ..||++..
T Consensus 226 taa-------g~VRR~L~---~aGF~V~k 244 (308)
T 3vyw_A 226 SSS-------LSVRKSLL---TLGFKVGS 244 (308)
T ss_dssp CCC-------HHHHHHHH---HTTCEEEE
T ss_pred eCc-------HHHHHHHH---HCCCEEEe
Confidence 566 89999885 35888755
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.037 Score=60.33 Aligned_cols=46 Identities=20% Similarity=0.036 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC----CcEEEEEeCCHHHHHHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG----KGKIVACELNKERVRRLKDTI 286 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~----~~~V~a~D~~~~rl~~l~~~~ 286 (441)
..-+|+|++||.||.++-+.+.... -..+.|+|+++.+++..+.|.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3457999999999999888664210 025789999999999998874
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.73 Score=43.81 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~-~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+.+|| +..|+|+.+.+++..+. ...+|++++.+....+.+.+.+....-.+++++ .+|..+...-..-+..+|.|+
T Consensus 10 ~~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 10 EGSLVL-VTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 467888 55668999999887653 335899999998877766555543222467887 789876543322234689999
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 382 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTC 382 (441)
..+..+..+ . + ..+.+.........+++.+.+....+.+||.+.
T Consensus 89 h~A~~~~~~---~---------------~--~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS 132 (342)
T 1y1p_A 89 HIASVVSFS---N---------------K--YDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp ECCCCCSCC---S---------------C--HHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EeCCCCCCC---C---------------C--HHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 877643321 0 0 122333445556778887765334467777543
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.058 Score=61.56 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC------------CCC-
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL------------DPK- 307 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~------------~~~- 307 (441)
.-+|+|++||.||.++-+... +- ..|.|+|+++.+++..+.|. .+..++.+|+..+ ...
T Consensus 851 ~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 457999999999999987653 21 25889999999999988874 2334555554321 111
Q ss_pred CCCCCCccEEEEcCCCCCCcccc
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAA 330 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~ 330 (441)
.+..+.+|+|+.-|||-+.....
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~ag 946 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMN 946 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSS
T ss_pred ccccCccceEEecCCCccccccc
Confidence 11124689999999998876543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.086 Score=51.05 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCH---HHHHHHHHHHHHhC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNK---ERVRRLKDTIKLSG 290 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~---~rl~~l~~~~~~~g 290 (441)
..+|+.|||-+||+|..+.....+ + .+.+++|+++ ..++.+++++++.|
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~-~--r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHc-C--CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 368999999999999866555444 3 5899999999 99999999988765
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.069 Score=51.74 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=47.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
..+|+.|||-+||+|..+.. |..++ .+.+++|+++..++.+++++++.+.. ...++.|+.++.
T Consensus 250 ~~~~~~VlDpF~GsGtt~~a-a~~~g--r~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i~ 312 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLV-AERES--RKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRIL 312 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHH-HHHTT--CEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH-HHHcC--CCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Confidence 36899999999999985544 44443 58999999999999999998877653 334455555544
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.38 Score=46.69 Aligned_cols=69 Identities=19% Similarity=0.097 Sum_probs=47.9
Q ss_pred HhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..++++|++||-.|+|+ |..+.+++..++ .+|+++|.++++++.++ .+|.+.+. .|...+. ..+
T Consensus 171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~v~---~~~~~~~------~~~ 235 (348)
T 3two_A 171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDAL----SMGVKHFY---TDPKQCK------EEL 235 (348)
T ss_dssp HTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHH----HTTCSEEE---SSGGGCC------SCE
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----hcCCCeec---CCHHHHh------cCC
Confidence 34788999999998765 555666777653 48999999999988764 47876543 3332221 268
Q ss_pred cEEEE
Q 013515 315 RAILL 319 (441)
Q Consensus 315 D~Il~ 319 (441)
|+|+-
T Consensus 236 D~vid 240 (348)
T 3two_A 236 DFIIS 240 (348)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88864
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.18 Score=54.04 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc---------C--CcEEEEEeCCHHHHHHHHH--------------HHHHh-----C
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK---------G--KGKIVACELNKERVRRLKD--------------TIKLS-----G 290 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~---------~--~~~V~a~D~~~~rl~~l~~--------------~~~~~-----g 290 (441)
+.-+|+|+|-|+|.-.+.+.+... . .-+++++|..|-..+.+++ .++.. |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 446899999999999888766531 1 1478999995433333332 12221 2
Q ss_pred C-----C----cEEEEeccCCCCCCCCC--CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHH
Q 013515 291 A-----A----NIEVLHGDFLNLDPKDP--AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 359 (441)
Q Consensus 291 ~-----~----~v~~~~~D~~~~~~~~~--~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (441)
+ + .+++..+|+.+..+... ....||.|++|+... .++||. |+.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p-----~~np~~-------------w~~-------- 191 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP-----AKNPDM-------------WNE-------- 191 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC-------CCTT-------------CSH--------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCC-----CCChhh-------------hhH--------
Confidence 1 1 46677889876554321 015799999999643 246664 223
Q ss_pred HHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEe
Q 013515 360 FQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 360 ~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~ 408 (441)
+++....++.+ |+++..-||. ..|.+.|.. .+|.+.
T Consensus 192 ---~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~l~~---aGf~~~ 228 (689)
T 3pvc_A 192 ---QLFNAMARMTRPGGTFSTFTAA-------GFVRRGLQQ---AGFNVT 228 (689)
T ss_dssp ---HHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHH---TTCEEE
T ss_pred ---HHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHh---CCeEEE
Confidence 34444445555 5666655565 567777743 466554
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.09 E-value=0.25 Score=46.89 Aligned_cols=82 Identities=10% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|.+|| +..|+|+.+..+++.+. ...+|+.+|.+++.++.+.+.++..|..++.++.+|+.+...- ...++.
T Consensus 41 ~k~vl-VTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 119 (293)
T 3rih_A 41 ARSVL-VTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA 119 (293)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 55666 66677888888887653 3458999999999888888877766655788899999874311 011356
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.++..+--.
T Consensus 120 iD~lvnnAg~~ 130 (293)
T 3rih_A 120 LDVVCANAGIF 130 (293)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999877543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.74 Score=42.60 Aligned_cols=85 Identities=7% Similarity=0.021 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPG-NKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G-~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 311 (441)
.|.++|=.|++.+ |.+..++..+. ...+|+.+|.+++.++.+.+.++..+-.++.++..|..+...- ...+
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4778888887653 67777766542 3468999999999999998888887766677888898764311 1124
Q ss_pred CCccEEEEcCCCCC
Q 013515 312 SEVRAILLDPSCSG 325 (441)
Q Consensus 312 ~~fD~Il~DpPCSg 325 (441)
+..|.++.++...+
T Consensus 85 G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 85 GNIDGVYHSIAFAN 98 (256)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEecccccc
Confidence 67899998876544
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.31 E-value=0.8 Score=42.35 Aligned_cols=81 Identities=7% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.+|.+++.++.+.+.++..+-.++.++..|..+...-. ..++.
T Consensus 10 ~k~vl-VTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 88 (262)
T 3pk0_A 10 GRSVV-VTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG 88 (262)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 56666 56667888888887653 33589999999999998888888776557888999988644210 11247
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.++..+--
T Consensus 89 id~lvnnAg~ 98 (262)
T 3pk0_A 89 IDVVCANAGV 98 (262)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=90.30 E-value=0.83 Score=42.73 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+. ...+|++++.++..++.+.+.+...|..++.++.+|..+...-. ..++.
T Consensus 28 ~k~vl-ITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 106 (286)
T 1xu9_A 28 GKKVI-VTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG 106 (286)
T ss_dssp TCEEE-ESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 66777 55677888888887653 34689999999999988888777777557888899987643110 01246
Q ss_pred ccEEEEc
Q 013515 314 VRAILLD 320 (441)
Q Consensus 314 fD~Il~D 320 (441)
+|.++..
T Consensus 107 iD~li~n 113 (286)
T 1xu9_A 107 LDMLILN 113 (286)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 8999987
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=0.69 Score=44.72 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC---cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~---~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.+.+|| +..|+|+.+.++++.+... .+|++++.++.....+.+.+. -.++.++.+|+.+...-...+..+|.|
T Consensus 20 ~~k~vl-VTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~~~D~V 95 (344)
T 2gn4_A 20 DNQTIL-ITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN---DPRMRFFIGDVRDLERLNYALEGVDIC 95 (344)
T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC---CTTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHhcCCEE
Confidence 366788 5667899999998766432 389999999888776655442 246889999998643211112468999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYST 381 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsT 381 (441)
+..+.-+....... + ..+.+.........+++.|.+. ..+.+||.+
T Consensus 96 ih~Aa~~~~~~~~~---------------~--~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~S 141 (344)
T 2gn4_A 96 IHAAALKHVPIAEY---------------N--PLECIKTNIMGASNVINACLKN-AISQVIALS 141 (344)
T ss_dssp EECCCCCCHHHHHH---------------S--HHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred EECCCCCCCCchhc---------------C--HHHHHHHHHHHHHHHHHHHHhC-CCCEEEEec
Confidence 98665322110000 0 1223333444556677777653 346777754
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=1.1 Score=40.86 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+.. ..+|+++|.++..++.+.+.++..+. ++.++.+|..+...-. ..++.
T Consensus 11 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 88 (255)
T 1fmc_A 11 GKCAI-ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEE-EECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 56676 566789999999886643 35899999999988888777776663 5778888987643110 01236
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.|+..+..
T Consensus 89 ~d~vi~~Ag~ 98 (255)
T 1fmc_A 89 VDILVNNAGG 98 (255)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999986653
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=0.85 Score=41.84 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~--~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
+.+|| +..|+|+.+.+++..+. ...+|+.++.+...++.+.+.++..|. ++.++.+|+.+...-. ..++
T Consensus 4 ~k~vl-ITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 4 IHVAL-VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCEEE-ESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 55666 66678999999987663 346899999999888888777777663 5778888987643110 0123
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+..+-.
T Consensus 82 ~id~li~~Ag~ 92 (276)
T 1wma_A 82 GLDVLVNNAGI 92 (276)
T ss_dssp SEEEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 68999987654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.45 Score=46.59 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=34.9
Q ss_pred CCCEEEEEc-CC-CchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 241 PGWKVLDAC-SA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 241 ~g~~VLDl~-ag-~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
+|++||=.| +| .|..+.++++.++ ..+|+++|.++++++.++ .+|.+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~----~lGad~v 221 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVK----SLGAHHV 221 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHH----HTTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHH----HcCCCEE
Confidence 799999776 33 3555666666543 369999999999988774 4787643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=88.75 E-value=0.74 Score=45.53 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=40.8
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~ 291 (441)
...++++|++||-.|||+ |..+.+++..++ ..+|+++|.++++++.++ .+|.
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa 231 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGF 231 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTC
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCC
Confidence 345788999999999876 667777887753 358999999999988764 4676
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=88.47 E-value=2.1 Score=39.30 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+|| +..|+|+.+.+++..+. ...+|+.++.+++.++.+.+.+...|. ++.++..|+.+...-. ..++
T Consensus 28 ~~k~vl-ITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 28 SGQVAV-VTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTCEEE-ESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 466777 55567888988887653 346899999999999999888887764 6888889987644210 1124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+..
T Consensus 106 ~id~lv~~Ag~ 116 (262)
T 3rkr_A 106 RCDVLVNNAGV 116 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68999987654
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=88.45 E-value=6 Score=39.02 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHH---HHHHHHHHHHHhC--------CCcEEEEeccCCCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKE---RVRRLKDTIKLSG--------AANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~---rl~~l~~~~~~~g--------~~~v~~~~~D~~~~~~~~ 308 (441)
++.+|| +..|+|+.+.+++..+... .+|++++.++. .++.+.+.++... ..++.++.+|..+...-.
T Consensus 68 ~~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 68 PLGNTL-LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCEEEE-EECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCEEE-EecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 355677 5567899999998876443 58999998866 5566655554431 146889999998744322
Q ss_pred CCCCCccEEEEcCCC
Q 013515 309 PAYSEVRAILLDPSC 323 (441)
Q Consensus 309 ~~~~~fD~Il~DpPC 323 (441)
....+|.|+..+..
T Consensus 147 -~~~~~d~Vih~A~~ 160 (427)
T 4f6c_A 147 -LPENMDTIIHAGAR 160 (427)
T ss_dssp -CSSCCSEEEECCCC
T ss_pred -CcCCCCEEEECCcc
Confidence 34678999986543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.29 E-value=0.76 Score=42.37 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.++++.+.. ..+|++++. ++..++.+.+.++..|. ++.++.+|..+...-. ..++
T Consensus 21 ~k~vl-ItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 98 (274)
T 1ja9_A 21 GKVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHFG 98 (274)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56777 666789999998886633 358999998 88888877777777664 5778889987643110 0123
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+...
T Consensus 99 ~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 99 GLDFVMSNSGME 110 (274)
T ss_dssp CEEEEECCCCCC
T ss_pred CCCEEEECCCCC
Confidence 689998766543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.00 E-value=3.2 Score=37.16 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v-~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
|.+|| +..|+|+.+.++++.+. ...+|++++.++..++.+.. . ++ .++.+|.. ..-...+..+|.|+.
T Consensus 21 ~~~il-VtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~---~~~~~~~~Dl~--~~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 21 GMRVL-VVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R---GASDIVVANLE--EDFSHAFASIDAVVF 90 (236)
T ss_dssp CCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T---TCSEEEECCTT--SCCGGGGTTCSEEEE
T ss_pred CCeEE-EECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C---CCceEEEcccH--HHHHHHHcCCCEEEE
Confidence 67888 55678999999887663 33689999999887765433 2 46 78889987 211122457899998
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
.+.
T Consensus 91 ~ag 93 (236)
T 3e8x_A 91 AAG 93 (236)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.99 E-value=2.6 Score=38.16 Aligned_cols=81 Identities=9% Similarity=0.131 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++.++..++.+.+.++..|. ++.++..|..+...- ...++.
T Consensus 5 ~k~vl-ITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 5 EKVAL-VTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENLA 82 (247)
T ss_dssp TCEEE-ESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 55666 55677888888877653 346899999999999999888888774 578888998764311 012356
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.++..+.-+
T Consensus 83 id~li~~Ag~~ 93 (247)
T 3lyl_A 83 IDILVNNAGIT 93 (247)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999877543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=87.83 E-value=0.35 Score=45.98 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=42.3
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 013515 292 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 371 (441)
Q Consensus 292 ~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~ 371 (441)
..++++++|..+.....+ .++||.|+.|||..........++ ......+..........++..+.++
T Consensus 20 ~~~~i~~gD~~~~l~~l~-~~s~DlIvtdPPY~~~~~y~~~~~------------~~~~~~~~~~~l~~l~~~~~~~~rv 86 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFP-EASVHLVVTSPPYWTLKRYEDTPG------------QLGHIEDYEAFLDELDRVWREVFRL 86 (297)
T ss_dssp -CEEEEESCHHHHHTTSC-TTCEEEEEECCCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEECcHHHHHhhCC-CCceeEEEECCCCCCccccCCChh------------hhcccccHHHHHHHHHHHHHHHHHH
Confidence 457899999987433221 268999999999854322111110 0001222333444456778888888
Q ss_pred CC-CcEEEEE
Q 013515 372 PG-VERVVYS 380 (441)
Q Consensus 372 ~~-~G~lvYs 380 (441)
|+ +|.++..
T Consensus 87 Lk~~G~l~i~ 96 (297)
T 2zig_A 87 LVPGGRLVIV 96 (297)
T ss_dssp EEEEEEEEEE
T ss_pred cCCCcEEEEE
Confidence 87 5665544
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.50 E-value=2.6 Score=38.26 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+||=. .|+|+.+.++++.+. ...+|+.+|.+++.++.+.+.++..+. .+.++..|..+...-. ..++
T Consensus 8 ~~k~vlIT-Gas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVT-GSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEE-CCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 36677744 467888888887663 346899999999999998888887663 6788889988754110 0124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+.-
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68999987754
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.48 E-value=4.1 Score=38.15 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCc----EEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKG----KIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DP 309 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~----~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~ 309 (441)
|.+||=.| |+||.+..++..+...| .|+.++.+.+.++.+.+.+...+ -.++.++..|+.+...- ..
T Consensus 33 ~k~~lVTG-as~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 33 KKTVLITG-ASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCEEEEec-CCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 66777555 56788888887653222 89999999999998888887653 24688889998875421 12
Q ss_pred CCCCccEEEEcCCC
Q 013515 310 AYSEVRAILLDPSC 323 (441)
Q Consensus 310 ~~~~fD~Il~DpPC 323 (441)
.++.+|.++.++-.
T Consensus 112 ~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 112 EFKDIDILVNNAGK 125 (287)
T ss_dssp GGCSCCEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 24578999987653
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=87.43 E-value=2.2 Score=39.24 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPG-NKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G-~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.|.+||=.|++.| |.+..++..+. ...+|+.++.+....+.+.+..+..+-.++.++..|+.+...-. ..+
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3667886776543 47777766552 34689999998877777777766666556888999998754211 112
Q ss_pred CCccEEEEcCCCCC
Q 013515 312 SEVRAILLDPSCSG 325 (441)
Q Consensus 312 ~~fD~Il~DpPCSg 325 (441)
+.+|.++..+....
T Consensus 86 g~id~li~~Ag~~~ 99 (266)
T 3oig_A 86 GVIHGIAHCIAFAN 99 (266)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCeeEEEEcccccc
Confidence 46899998776543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.32 E-value=2.3 Score=39.42 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+||.+..++..+. ...+|+.++.+++.++.+.+.++..|. ++.++..|+.+...-. ..++.
T Consensus 4 ~k~~l-VTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 4 DKVIL-ITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp TCEEE-ESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 55567888888887653 346899999999999999888887764 6778888887643110 11246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.++..+.-.
T Consensus 82 iD~lVnnAG~~ 92 (264)
T 3tfo_A 82 IDVLVNNAGVM 92 (264)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999877543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.27 E-value=2.2 Score=39.68 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|..+| +..|++|.+..++..+. ...+|+.+|.+++.++.+.+.++..|. ++..+..|..+...- ...++.
T Consensus 9 gKval-VTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 86 (255)
T 4g81_D 9 GKTAL-VTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEGIH 86 (255)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 66666 55566778888877663 346999999999999999988888875 577888888764311 123578
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
.|.++.++--
T Consensus 87 iDiLVNNAG~ 96 (255)
T 4g81_D 87 VDILINNAGI 96 (255)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 8999988753
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.19 E-value=2.3 Score=39.38 Aligned_cols=81 Identities=20% Similarity=0.127 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+. ...+|+++|.++..++.+.+.++..|. ++.++.+|+.+...-. ..++.
T Consensus 31 ~k~vl-ITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 108 (272)
T 1yb1_A 31 GEIVL-ITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIGD 108 (272)
T ss_dssp TCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 56777 45567888988887653 346899999999988888887777664 6888889987643110 01246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 109 iD~li~~Ag~~ 119 (272)
T 1yb1_A 109 VSILVNNAGVV 119 (272)
T ss_dssp CSEEEECCCCC
T ss_pred CcEEEECCCcC
Confidence 89999877543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=2.1 Score=38.46 Aligned_cols=80 Identities=9% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHH-HhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIK-LSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~-~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
+.+|| +..|+|+.+.++++.+. ...+|+.++.+.+.++.+.+.+. ..| .++.++..|..+...-. ..++
T Consensus 2 ~k~vl-ITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAV-ITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEE-EESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 44566 44567888888887663 34689999999999988877775 445 46888889987644110 1124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+.-
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 68999987754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.86 E-value=1.3 Score=41.95 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+||=.| |+|+.+.+++..+. ...+|+.++.+++.++.+.+.++..|. ++.++..|+.+...-. ..++
T Consensus 30 ~gk~vlVTG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTG-GASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 477788554 55788888877653 346899999999999999888887764 5788889988754210 0124
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
.+|.++..+.-..
T Consensus 108 ~id~lvnnAg~~~ 120 (301)
T 3tjr_A 108 GVDVVFSNAGIVV 120 (301)
T ss_dssp SCSEEEECCCCCC
T ss_pred CCCEEEECCCcCC
Confidence 6899999776443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.76 E-value=2.2 Score=39.58 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|++++.++..++.+.+.++..|. ..+.++.+|+.+...-. ..++
T Consensus 32 ~k~vl-VTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLAL-VTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEE-EESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 56777 45567888888887653 346899999999999888888877765 45778888987643110 0123
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+.
T Consensus 111 ~iD~vi~~Ag 120 (279)
T 1xg5_A 111 GVDICINNAG 120 (279)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899988654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=86.36 E-value=2.2 Score=39.18 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCc-hHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPG-NKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G-~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+||=.|+ +| |.+.+++..+ ....+|+.+|.+.+.++.+.+.++..+-.++.++..|+.+...-. ..++
T Consensus 22 ~k~vlITGa-sg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 100 (266)
T 3o38_A 22 GKVVLVTAA-AGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG 100 (266)
T ss_dssp TCEEEESSC-SSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 667775554 44 5677776654 334689999999999998888887766567899999998644210 1124
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
.+|.++..+--+.
T Consensus 101 ~id~li~~Ag~~~ 113 (266)
T 3o38_A 101 RLDVLVNNAGLGG 113 (266)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCcEEEECCCcCC
Confidence 6899999776443
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=86.34 E-value=3.5 Score=37.33 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC------CCCCCCCCcc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD------PKDPAYSEVR 315 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~------~~~~~~~~fD 315 (441)
|.+|| +..|+|+.+.+++..+...+.|++++.++..++.+.+ ..++.++..|..+.. .....++.+|
T Consensus 5 ~k~vl-ITGas~gIG~~~a~~l~~g~~v~~~~r~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id 77 (245)
T 3e9n_A 5 KKIAV-VTGATGGMGIEIVKDLSRDHIVYALGRNPEHLAALAE------IEGVEPIESDIVKEVLEEGGVDKLKNLDHVD 77 (245)
T ss_dssp -CEEE-EESTTSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHT------STTEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred CCEEE-EEcCCCHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHh------hcCCcceecccchHHHHHHHHHHHHhcCCCC
Confidence 55666 4556788899998887667899999999888776543 235777777765431 1112235789
Q ss_pred EEEEcCCCC
Q 013515 316 AILLDPSCS 324 (441)
Q Consensus 316 ~Il~DpPCS 324 (441)
.++..+...
T Consensus 78 ~lv~~Ag~~ 86 (245)
T 3e9n_A 78 TLVHAAAVA 86 (245)
T ss_dssp EEEECC---
T ss_pred EEEECCCcC
Confidence 999877543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=86.29 E-value=2.1 Score=39.51 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++.+++.++.+.+.+.. .| .++.++..|+.+...-. ..++
T Consensus 20 ~k~vl-VTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 97 (266)
T 4egf_A 20 GKRAL-ITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAFG 97 (266)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56666 56667888888887663 346899999999999888777766 45 36888999998754211 1124
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
.+|.++..+--..
T Consensus 98 ~id~lv~nAg~~~ 110 (266)
T 4egf_A 98 GLDVLVNNAGISH 110 (266)
T ss_dssp SCSEEEEECCCCC
T ss_pred CCCEEEECCCcCC
Confidence 7899998876443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=3.9 Score=38.40 Aligned_cols=81 Identities=11% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPG-NKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G-~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.|.+||=.|++.| |.+..++..+. ...+|+.++.++...+.+.+..+..+ ++.++..|+.+...-. ..+
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhc
Confidence 4778887787654 57777766553 34689999999776676766666665 5778889987643210 123
Q ss_pred CCccEEEEcCCC
Q 013515 312 SEVRAILLDPSC 323 (441)
Q Consensus 312 ~~fD~Il~DpPC 323 (441)
+.+|.++..+--
T Consensus 108 g~iD~lVnnAG~ 119 (293)
T 3grk_A 108 GKLDFLVHAIGF 119 (293)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 578999987654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.20 E-value=3.7 Score=37.01 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---------CC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---------PA 310 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---------~~ 310 (441)
.|.+|| +..|+|+.+.+++..+. ...+|+.++.++..++.+.+.++..+..++.++..|........ ..
T Consensus 13 ~~k~vl-ITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 13 KGRVIL-VTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTCEEE-ESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 366677 56667888888887663 34689999999999999999888887666677777763221110 01
Q ss_pred CCCccEEEEcCCCC
Q 013515 311 YSEVRAILLDPSCS 324 (441)
Q Consensus 311 ~~~fD~Il~DpPCS 324 (441)
++.+|.++..+...
T Consensus 92 ~g~id~lv~nAg~~ 105 (247)
T 3i1j_A 92 FGRLDGLLHNASII 105 (247)
T ss_dssp HSCCSEEEECCCCC
T ss_pred CCCCCEEEECCccC
Confidence 24689999877643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.99 E-value=1.5 Score=43.12 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=39.6
Q ss_pred HhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
.+++++|++||-.|+|+ |..+.++|+.++ ..+|+++|.++++++.++ .+|.+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~----~lGa~ 232 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGFE 232 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCE
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 35688999999998765 556677777653 348999999999998774 46863
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=6.5 Score=38.77 Aligned_cols=75 Identities=16% Similarity=0.042 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHh----------------cCCcEEEEEeCC-----------HHHHHHHHHHHHHhCC-Cc
Q 013515 242 GWKVLDACSAPGNKTVHLAALM----------------KGKGKIVACELN-----------KERVRRLKDTIKLSGA-AN 293 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~----------------~~~~~V~a~D~~-----------~~rl~~l~~~~~~~g~-~~ 293 (441)
..+|+|+||++|.-|+.+...+ .+...|+.+|+- +...+.++ +..|- .+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 4789999999999999887661 134678899986 33222221 22332 12
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 294 IEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 294 v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
-.++.+....+-...-..++||.|+.
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~S 155 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHS 155 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEE
T ss_pred ceEEEecchhhhhccCCCCceEEEEe
Confidence 24566665554322111278999975
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=85.75 E-value=2.4 Score=39.44 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCCCCCC-------CC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNLDPKD-------PA 310 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~--~v~~~~~D~~~~~~~~-------~~ 310 (441)
.|.+||=. .|+|+.+.+++..+. ...+|+.+|.+++.++.+.+.++..|.. ++.++.+|..+...-. ..
T Consensus 10 ~~k~vlVT-Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (281)
T 3svt_A 10 QDRTYLVT-GGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW 88 (281)
T ss_dssp TTCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 36677744 457888888877653 3468999999999999888888877642 6888889987644110 11
Q ss_pred CCCccEEEEcCCC
Q 013515 311 YSEVRAILLDPSC 323 (441)
Q Consensus 311 ~~~fD~Il~DpPC 323 (441)
++.+|.++..+--
T Consensus 89 ~g~id~lv~nAg~ 101 (281)
T 3svt_A 89 HGRLHGVVHCAGG 101 (281)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 2468999987753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=85.63 E-value=1.7 Score=42.12 Aligned_cols=54 Identities=30% Similarity=0.357 Sum_probs=40.5
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++|++||-.|+|+ |..+.+++..+ +..+|+++|.++++++.++ .+|.+.
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~ 219 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADL 219 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCE
Confidence 345788999999999765 55566677665 3348999999999988764 468764
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=1.9 Score=41.44 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=41.4
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
....+++|++||-.|||+ |..+.+++..++ .+|+++|.++++++.++ ++|.+.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~ 213 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLAR----RLGAEV 213 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCCCE
Confidence 345678999999999876 777777887753 49999999999988764 478754
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=85.61 E-value=2.1 Score=39.70 Aligned_cols=82 Identities=6% Similarity=0.048 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+|| +..|+||.+..++..+. ...+|+.++.++..++.+.+.++..|. ++.++..|+.+...-. ..++
T Consensus 27 ~~k~~l-VTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAI-VTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 355666 66677888888887653 346899999999999998888888775 4667788887643110 1124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.++..+.-.
T Consensus 105 ~iD~lvnnAg~~ 116 (270)
T 3ftp_A 105 ALNVLVNNAGIT 116 (270)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999877543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.35 E-value=3.5 Score=37.97 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC---CCCCCCccE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK---DPAYSEVRA 316 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~---~~~~~~fD~ 316 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.+|.+++.++.+.+.+...+. ..+.++..|..+...- ...++.+|.
T Consensus 10 ~k~~l-VTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 88 (267)
T 3t4x_A 10 GKTAL-VTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI 88 (267)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence 56667 55567888888887653 346899999999999888887777643 4577788888763310 012357899
Q ss_pred EEEcCCCC
Q 013515 317 ILLDPSCS 324 (441)
Q Consensus 317 Il~DpPCS 324 (441)
++..+.-+
T Consensus 89 lv~nAg~~ 96 (267)
T 3t4x_A 89 LINNLGIF 96 (267)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99877543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=85.20 E-value=2.2 Score=39.16 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++.+++.++.+.+.+... |. ++.++.+|..+...-. ..++
T Consensus 7 ~k~vl-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (263)
T 3ai3_A 7 GKVAV-ITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSFG 84 (263)
T ss_dssp TCEEE-EESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56677 45567888888887653 3358999999998888777666554 53 5778888987643110 0124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+.-
T Consensus 85 ~id~lv~~Ag~ 95 (263)
T 3ai3_A 85 GADILVNNAGT 95 (263)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987754
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.13 E-value=2.5 Score=39.84 Aligned_cols=81 Identities=14% Similarity=0.262 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCCCCCC-------CCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~--~v~~~~~D~~~~~~~~-------~~~ 311 (441)
|.+|| +..|+|+.+..++..+. ...+|+.++.+++.++.+.+.+...|.. ++.++..|+.+...-. ..+
T Consensus 26 ~k~vl-VTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 104 (297)
T 1xhl_A 26 GKSVI-ITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 104 (297)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 56666 56678888988887663 3468999999999988887777766532 6888889987643110 012
Q ss_pred CCccEEEEcCCC
Q 013515 312 SEVRAILLDPSC 323 (441)
Q Consensus 312 ~~fD~Il~DpPC 323 (441)
+.+|.++..+..
T Consensus 105 g~iD~lvnnAG~ 116 (297)
T 1xhl_A 105 GKIDILVNNAGA 116 (297)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 468999987754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=85.01 E-value=2.9 Score=38.06 Aligned_cols=79 Identities=8% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+. ...+|++++.++..++.+.+.++..+. ++.++.+|..+...-. ..++.
T Consensus 13 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (260)
T 3awd_A 13 NRVAI-VTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH-DVSSVVMDVTNTESVQNAVRSVHEQEGR 90 (260)
T ss_dssp TCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 66777 45567889998887653 346899999999888877777776663 5888889987643110 01236
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
+|.|+..+.
T Consensus 91 id~vi~~Ag 99 (260)
T 3awd_A 91 VDILVACAG 99 (260)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998664
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.77 E-value=1.9 Score=39.58 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.+|.+.+.++.+.+.++..|. ++.++..|..+...-. ..++.
T Consensus 12 ~k~vl-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 89 (256)
T 3gaf_A 12 DAVAI-VTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQFGK 89 (256)
T ss_dssp TCEEE-ECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56666 55667888888877653 236899999999999998888888774 6788889987644210 11247
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.++..+--.
T Consensus 90 id~lv~nAg~~ 100 (256)
T 3gaf_A 90 ITVLVNNAGGG 100 (256)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999877543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=84.74 E-value=1.8 Score=40.17 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.+|.+++.++.+.+.++..|. ++.++..|..+...-. ..++.
T Consensus 26 gk~~l-VTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (271)
T 4ibo_A 26 GRTAL-VTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQGID 103 (271)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 66677 56677888888887663 346899999999999988888887774 5788888887643210 11347
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.++..+-.+
T Consensus 104 iD~lv~nAg~~ 114 (271)
T 4ibo_A 104 VDILVNNAGIQ 114 (271)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999877543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.70 E-value=1.8 Score=42.25 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=40.3
Q ss_pred HhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
..++++|++||-.|+|+ |..+.++++.++ ..+|+++|.++++++.++ .+|.+.
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~ 238 (371)
T 1f8f_A 185 ALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATH 238 (371)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCCE
Confidence 35678999999999876 566777777653 347999999999988764 467653
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.46 E-value=1.8 Score=39.56 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=54.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCc
Q 013515 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEV 314 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~f 314 (441)
.+|| +..|+|+.+.+++..+. ...+|+.++.+++.++.+.+.++..|. ++.++..|..+...-. ..++.+
T Consensus 3 k~vl-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 3 KVAL-VTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 4556 44567888888887653 335899999999988888777776663 5778888987643110 113478
Q ss_pred cEEEEcCCC
Q 013515 315 RAILLDPSC 323 (441)
Q Consensus 315 D~Il~DpPC 323 (441)
|.++..+..
T Consensus 81 d~lv~nAg~ 89 (256)
T 1geg_A 81 DVIVNNAGV 89 (256)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999987754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=84.31 E-value=5.2 Score=36.82 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=73.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+||.+.+++..+. ...+|+.++. +.+.++.+.+.++..|. ++.++..|..+...-. ..++
T Consensus 18 ~k~~l-VTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 95 (270)
T 3is3_A 18 GKVAL-VTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAHFG 95 (270)
T ss_dssp TCEEE-ESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 66677 55567888888887663 3357887776 56778888888887774 5778889988644210 1124
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHH----HHHHHHHHHHHHhCCC-CCcEEEEEcC
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNK----LSAFQKKALRHALSFP-GVERVVYSTC 382 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~----l~~~Q~~lL~~a~~~~-~~G~lvYsTC 382 (441)
.+|.++.++.-...+.+. | .+.++... ...-...+++.++..+ ++|.+|+.+.
T Consensus 96 ~id~lvnnAg~~~~~~~~---~--------------~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGHLK---D--------------VTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp CCCEEECCCCCCCCCCGG---G--------------CCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCEEEECCCCCCCCCcc---c--------------CCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 689998876543322211 0 12333332 2234445566666644 4677777654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=84.20 E-value=2.9 Score=38.11 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|++++. ++..++.+.+.++..+ .++.++.+|..+...-. ..++
T Consensus 7 ~k~vl-ITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (261)
T 1gee_A 7 GKVVV-ITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 55676 56677889988887653 3468999999 8888887777777665 36778888987643110 0123
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+...
T Consensus 85 ~id~li~~Ag~~ 96 (261)
T 1gee_A 85 KLDVMINNAGLE 96 (261)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=83.73 E-value=3.4 Score=37.75 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC-C
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY-S 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~-~ 312 (441)
+.+|| +..|+|+.+.+++..+. ...+|++++.++..++.+.+.++..|. ++.++..|..+...-. ..+ +
T Consensus 14 ~k~vl-ITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 91 (266)
T 1xq1_A 14 AKTVL-VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFGG 91 (266)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 55677 66678889999887653 346899999999888887777776664 5778888887643110 001 4
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+.
T Consensus 92 ~id~li~~Ag 101 (266)
T 1xq1_A 92 KLDILINNLG 101 (266)
T ss_dssp CCSEEEEECC
T ss_pred CCcEEEECCC
Confidence 6799998764
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.58 E-value=3 Score=37.87 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++. +++.++.+.+.++..|. ++.++..|..+...-. ..++
T Consensus 4 ~k~vl-VTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 4 GKVAL-VTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGS-DAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 55666 56677889998887663 3358999999 88888887777776663 5778888987643110 0124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.++..+...
T Consensus 82 ~id~lv~nAg~~ 93 (246)
T 2uvd_A 82 QVDILVNNAGVT 93 (246)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.48 E-value=3.7 Score=37.86 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTI-KLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~-~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++.++..++.+.+.+ +..|. ++.++.+|..+...-. ..++
T Consensus 21 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 98 (267)
T 1vl8_A 21 GRVAL-VTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKFG 98 (267)
T ss_dssp TCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 55677 45567888888887653 3368999999998888777666 44554 5778888887643110 0124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.++..+...
T Consensus 99 ~iD~lvnnAg~~ 110 (267)
T 1vl8_A 99 KLDTVVNAAGIN 110 (267)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 689999877543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=83.46 E-value=3.5 Score=37.04 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHhc-CCcEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~-~~~~V~a-~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
.+|| +..|+|+.+.++++.+. ...+|++ .+.++..++.+.+.++..+. ++.++.+|..+...-. ..++.
T Consensus 2 k~vl-VTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 2 PVVV-VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 3455 66778999999888663 3357887 48888888888777776663 6788888987643110 01246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 80 id~li~~Ag~~ 90 (244)
T 1edo_A 80 IDVVVNNAGIT 90 (244)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999876543
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=83.39 E-value=7 Score=35.89 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeC-CHHHHHHHHHHHHHh-CCCcEEEEeccCCCC----CCCC------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLS-GAANIEVLHGDFLNL----DPKD------ 308 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~-~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~----~~~~------ 308 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++. +++.++.+.+.++.. | .++.++.+|..+. ..-.
T Consensus 11 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 11 CPAAV-ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp CCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCccccHHHHHHHHHHH
Confidence 55666 66677889999887663 3368999999 988888877777665 5 3678888998875 2100
Q ss_pred -CCCCCccEEEEcCCCC
Q 013515 309 -PAYSEVRAILLDPSCS 324 (441)
Q Consensus 309 -~~~~~fD~Il~DpPCS 324 (441)
..++.+|.++..+-..
T Consensus 89 ~~~~g~id~lv~nAg~~ 105 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASAY 105 (276)
T ss_dssp HHHHSCCCEEEECCCCC
T ss_pred HHhcCCCCEEEECCCCC
Confidence 0124689999877543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=83.39 E-value=2.9 Score=38.33 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.++++.+. ...+|+.+|.+++.++.+.+.++..+ .++.++..|..+...-. ..++.
T Consensus 6 ~k~vl-VTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (257)
T 3imf_A 6 EKVVI-ITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDEKFGR 83 (257)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 55666 56677888888887653 34689999999999988887776655 36888889987643110 11246
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.++..+--
T Consensus 84 id~lv~nAg~ 93 (257)
T 3imf_A 84 IDILINNAAG 93 (257)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987653
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.38 E-value=2.8 Score=38.88 Aligned_cols=82 Identities=13% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCCCCCC-------CCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~--~v~~~~~D~~~~~~~~-------~~~ 311 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++.+++.++.+.+.+...|.. ++.++.+|+.+...-. ..+
T Consensus 6 ~k~vl-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (280)
T 1xkq_A 6 NKTVI-ITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 84 (280)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 55666 55677888888887653 3468999999999888877777665531 6888889988643110 012
Q ss_pred CCccEEEEcCCCC
Q 013515 312 SEVRAILLDPSCS 324 (441)
Q Consensus 312 ~~fD~Il~DpPCS 324 (441)
+.+|.++..+...
T Consensus 85 g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 85 GKIDVLVNNAGAA 97 (280)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4689999877543
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=83.33 E-value=3.6 Score=36.94 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=53.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCC-cEEEEE-eCCHHHHHHHHHHHHHhCCCcEEE-EeccCCCCCCCC-------CCCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGK-GKIVAC-ELNKERVRRLKDTIKLSGAANIEV-LHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~-~~V~a~-D~~~~rl~~l~~~~~~~g~~~v~~-~~~D~~~~~~~~-------~~~~~ 313 (441)
+|| +..|+|+.+.++++.+... .+|+++ +.++..++.+.+.++..|.. +.. +.+|..+...-. ..++.
T Consensus 3 ~vl-ITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 2ph3_A 3 KAL-ITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSP-LVAVLGANLLEAEAATALVHQAAEVLGG 80 (245)
T ss_dssp EEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCS-CEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred EEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCc-eEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence 455 5667899999998876443 588887 88988888877777766643 444 788887643110 01246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 81 ~d~li~~Ag~~ 91 (245)
T 2ph3_A 81 LDTLVNNAGIT 91 (245)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999877543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.21 E-value=3.5 Score=38.60 Aligned_cols=80 Identities=9% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHH-----hCCCcEEEEeccCCCCCCCC-------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-----SGAANIEVLHGDFLNLDPKD------- 308 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~-----~g~~~v~~~~~D~~~~~~~~------- 308 (441)
|.+||=.| |+|+.+.+++..+. ...+|+.++.+...++.+.+.++. .+ .++.++.+|+.+...-.
T Consensus 18 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 95 (303)
T 1yxm_A 18 GQVAIVTG-GATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQ-ARVIPIQCNIRNEEEVNNLVKSTL 95 (303)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCC-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCC-ccEEEEecCCCCHHHHHHHHHHHH
Confidence 56777554 67889988887653 346899999999988887777765 23 36888899987643110
Q ss_pred CCCCCccEEEEcCCC
Q 013515 309 PAYSEVRAILLDPSC 323 (441)
Q Consensus 309 ~~~~~fD~Il~DpPC 323 (441)
..++.+|.|+..+..
T Consensus 96 ~~~g~id~li~~Ag~ 110 (303)
T 1yxm_A 96 DTFGKINFLVNNGGG 110 (303)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 012368999987753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.15 E-value=3.4 Score=38.31 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeC-------------CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-------------NKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~-------------~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
.|.+||= ..|+|+.+.+++..+. ...+|+.+|. +++.++.+.+.++..|. ++.++..|..+...
T Consensus 14 ~gk~~lV-TGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 14 QGRVAFI-TGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDDAA 91 (280)
T ss_dssp TTCEEEE-ESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHH
T ss_pred CCCEEEE-ECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHH
Confidence 4667774 4556778888877653 3468999998 78888888888777764 57788889876431
Q ss_pred CC-------CCCCCccEEEEcCCCC
Q 013515 307 KD-------PAYSEVRAILLDPSCS 324 (441)
Q Consensus 307 ~~-------~~~~~fD~Il~DpPCS 324 (441)
-. ..++.+|.++..+--.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 10 1124789999877543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=83.03 E-value=13 Score=34.07 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=49.9
Q ss_pred CEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
.+||=.| + |..+.++++.+.. ..+|++++.++.....+.. .+++++.+|..++. ...+|.|+.-+
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-----~~~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-----LDGVTHLLIST 71 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-----CTTCCEEEECC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc-----cCCCCEEEECC
Confidence 5788888 5 9999999887643 3589999999876654432 35788999998855 26789999855
Q ss_pred C
Q 013515 322 S 322 (441)
Q Consensus 322 P 322 (441)
.
T Consensus 72 ~ 72 (286)
T 3ius_A 72 A 72 (286)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=82.85 E-value=5 Score=36.52 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC--CCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF--LNLDPK-------DPAY 311 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~--~~~~~~-------~~~~ 311 (441)
|.+||= ..|+|+.+..++..+. ...+|+.+|.+++.++.+.+.+...+...+.++..|. .+.... ...+
T Consensus 12 ~k~vlV-TGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (252)
T 3f1l_A 12 DRIILV-TGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNY 90 (252)
T ss_dssp TCEEEE-ESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred CCEEEE-eCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence 667774 4566788888877653 3468999999999999888888776544677888888 332110 0123
Q ss_pred CCccEEEEcCCC
Q 013515 312 SEVRAILLDPSC 323 (441)
Q Consensus 312 ~~fD~Il~DpPC 323 (441)
+.+|.++..+--
T Consensus 91 g~id~lv~nAg~ 102 (252)
T 3f1l_A 91 PRLDGVLHNAGL 102 (252)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 578999987753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=82.66 E-value=5.6 Score=36.48 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+||=. .|+||.+.+++..+. ...+|+.+|.+++.++.+.+.+.. .+-.++.++..|..+...-. ..++
T Consensus 8 ~k~~lVT-Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (265)
T 3lf2_A 8 EAVAVVT-GGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG 86 (265)
T ss_dssp TCEEEEE-TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEe-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5667744 456778888877653 346899999999999988888776 44445888889987643110 1124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.++..+.-+
T Consensus 87 ~id~lvnnAg~~ 98 (265)
T 3lf2_A 87 CASILVNNAGQG 98 (265)
T ss_dssp SCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999877543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.58 E-value=7.9 Score=35.68 Aligned_cols=125 Identities=8% Similarity=0.088 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN------------KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~------------~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.|.+|| +..|+|+.+.+++..+. ...+|+.+|.+ .+.++.+...++..|. ++.++..|..+...-
T Consensus 9 ~gk~vl-VTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVL-VTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHH
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHHH
Confidence 366777 45556788888877653 34689999987 7888888888877764 678888998764421
Q ss_pred C-------CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE
Q 013515 308 D-------PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY 379 (441)
Q Consensus 308 ~-------~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY 379 (441)
. ..++.+|.++..+.....+ .+. . .+.| .+.+.....-...+++.++..++ +|.+|+
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~-----~~~--~-------~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 151 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLG-----AHL--P-------VQAF-ADAFDVDFVGVINTVHAALPYLTSGASIIT 151 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCC-----TTC--C-------THHH-HHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCccc-----CcC--C-------HHHH-HHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence 0 1124789999877643322 110 0 0001 12233333445566677777554 678887
Q ss_pred EcC
Q 013515 380 STC 382 (441)
Q Consensus 380 sTC 382 (441)
.+.
T Consensus 152 isS 154 (287)
T 3pxx_A 152 TGS 154 (287)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.47 E-value=4.3 Score=36.68 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~~fD 315 (441)
.++.+|| +..|+|+.+.+++..+. ...+|+.++.+++.++.+.+.+. .++.+...|..+...- ....+.+|
T Consensus 12 ~~~k~vl-VTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id 86 (249)
T 3f9i_A 12 LTGKTSL-ITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLISKTSNLD 86 (249)
T ss_dssp CTTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred CCCCEEE-EECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence 3467777 66667888888887663 34689999999988877665542 3677888888764311 01124689
Q ss_pred EEEEcCCCCC
Q 013515 316 AILLDPSCSG 325 (441)
Q Consensus 316 ~Il~DpPCSg 325 (441)
.++..+....
T Consensus 87 ~li~~Ag~~~ 96 (249)
T 3f9i_A 87 ILVCNAGITS 96 (249)
T ss_dssp EEEECCC---
T ss_pred EEEECCCCCC
Confidence 9998776443
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=3.3 Score=38.00 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVAC-ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~-D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.|.+|| +..|+|+.+.+++..+.. ..+|+.+ +.++..++.+.+.++..|. ++.++..|..+...-. ..+
T Consensus 3 ~~k~vl-VTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCAL-VTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEE-ESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEE-EecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355666 566678889888876643 3577775 8899988888888877664 5788889987643110 112
Q ss_pred CCccEEEEcCCC
Q 013515 312 SEVRAILLDPSC 323 (441)
Q Consensus 312 ~~fD~Il~DpPC 323 (441)
+.+|.++..+-.
T Consensus 81 g~id~lv~nAg~ 92 (258)
T 3oid_A 81 GRLDVFVNNAAS 92 (258)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 467999987753
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=82.25 E-value=3.4 Score=39.13 Aligned_cols=78 Identities=5% Similarity=0.067 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHH--HHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLK--DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~--~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.+|| +..|+|+.+.++++.+. ...+|+++..++.....+. ..+. ...++.++.+|..+...-...+..+|.|+
T Consensus 9 ~~~vl-VTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi 85 (338)
T 2rh8_A 9 KKTAC-VVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ--ELGDLKIFRADLTDELSFEAPIAGCDFVF 85 (338)
T ss_dssp CCEEE-EECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG--GGSCEEEEECCTTTSSSSHHHHTTCSEEE
T ss_pred CCEEE-EECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC--CCCcEEEEecCCCChHHHHHHHcCCCEEE
Confidence 56788 56689999999987653 3357888777654321111 1121 11357888899876442211123579998
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
.-+.
T Consensus 86 h~A~ 89 (338)
T 2rh8_A 86 HVAT 89 (338)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7653
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=82.14 E-value=3.6 Score=38.17 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.|.+||=. .|+||.+..+++.+.. ..+|+.+|.+...++.+.+.+.. .| .++.++..|+.+...-. ..+
T Consensus 26 ~~k~~lVT-Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 26 RDKVAFIT-GGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLSMDVRAPPAVMAAVDQALKEF 103 (277)
T ss_dssp TTCEEEEE-TTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36677744 4567888888876643 35899999999888777666654 34 46888899987643110 112
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
+.+|.++..+-
T Consensus 104 g~id~lv~nAg 114 (277)
T 4fc7_A 104 GRIDILINCAA 114 (277)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 47899998775
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=82.12 E-value=5.7 Score=37.19 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN--KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PA 310 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~--~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~ 310 (441)
.|.+||=.| |+|+.+.+++..+. ...+|+.++.+ ....+.+.+.++..|. ++.++.+|+.+...-. ..
T Consensus 48 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTG-GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 366777555 57888888887663 33588888886 4567777777777774 6778888887643110 11
Q ss_pred CCCccEEEEcCCCCC-CcccccccCccCCCCCCCCCCCcccHHHHH----HHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 311 YSEVRAILLDPSCSG-SGTAAERLDHLLPSHASGHTADPTEMERLN----KLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg-~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~----~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++.+|.++..+.-.. .+.+. | .+.++.. ....-...+++.++..++ +|.||+.+.
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~---~--------------~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIK---D--------------LTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGG---G--------------CCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCcCCCCCcc---c--------------CCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 246899998765322 11110 0 1233333 233345567777777554 687777543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.05 E-value=3.4 Score=38.41 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+..++..+.. ..+|++++.+++.++.+.+.++..|. ++.++.+|+.+...-. ..++.
T Consensus 44 ~k~vl-ITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~~~ 121 (285)
T 2c07_A 44 NKVAL-VTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHKN 121 (285)
T ss_dssp SCEEE-EESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 55677 455678899998887643 35888899998888877777766554 5778888987643110 01246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+.-.
T Consensus 122 id~li~~Ag~~ 132 (285)
T 2c07_A 122 VDILVNNAGIT 132 (285)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999876543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=3.2 Score=39.78 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=38.8
Q ss_pred HhCCCCCCEEEEEcCCCch-HHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~-kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...+++|++||=.|+|+++ .+..++.... ..+|+++|.++++++.+ +.+|.+.
T Consensus 158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~----~~~Ga~~ 211 (348)
T 4eez_A 158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLA----KKIGADV 211 (348)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHH----HHTTCSE
T ss_pred ccCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhh----hhcCCeE
Confidence 4568899999999998754 4445555543 47999999999988765 4567653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=81.90 E-value=2 Score=45.68 Aligned_cols=128 Identities=14% Similarity=0.134 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc---------C--CcEEEEEeC---CHHHHHHHH-----------HHHHHh-----CC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK---------G--KGKIVACEL---NKERVRRLK-----------DTIKLS-----GA 291 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~---------~--~~~V~a~D~---~~~rl~~l~-----------~~~~~~-----g~ 291 (441)
.-+|+|+|-|+|.-.+...+... . .-+++++|. +.+-+..+- +.++.. |+
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 45899999999998877665531 1 245899999 666665322 222222 11
Q ss_pred ---------CcEEEEeccCCCCCCCCC--CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHH
Q 013515 292 ---------ANIEVLHGDFLNLDPKDP--AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF 360 (441)
Q Consensus 292 ---------~~v~~~~~D~~~~~~~~~--~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (441)
-.+++..+|+.+..+... ....||.|++|+... .++||. |+.
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p-----~~np~~-------------w~~--------- 199 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP-----AKNPDM-------------WTQ--------- 199 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG-----GGCGGG-------------SCH---------
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC-----cCChhh-------------hhH---------
Confidence 124566678765443221 015699999999632 356764 233
Q ss_pred HHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEe
Q 013515 361 QKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 361 Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~ 408 (441)
+++....++++ ||++...||. ..|.+.|.. .+|.+.
T Consensus 200 --~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~L~~---aGf~v~ 236 (676)
T 3ps9_A 200 --NLFNAMARLARPGGTLATFTSA-------GFVRRGLQD---AGFTMQ 236 (676)
T ss_dssp --HHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHH---HTCEEE
T ss_pred --HHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHh---CCeEEE
Confidence 44555555556 4555433343 567777753 355543
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=81.87 E-value=2.8 Score=38.95 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSE 313 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~~~ 313 (441)
.|.+|| +..|+||.+..++..+. ...+|+.+|.+++.++.+.+.+...|. ++.++..|..+..... ...+.
T Consensus 32 ~gk~~l-VTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 32 RGRTAL-VTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGG-TAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TTCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTC-CEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 366777 56667888888887653 346899999999888888888877664 6788899987654211 00146
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.++.++--.
T Consensus 110 iD~lvnnAg~~ 120 (275)
T 4imr_A 110 VDILVINASAQ 120 (275)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999877543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=81.37 E-value=1.9 Score=33.73 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC--cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~--~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+.+|+=+|+ |+.+..++..+... .+|+++|.++++++.+. ..| +.+...|..+..........+|.|+
T Consensus 4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~~---~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RMG---VATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TTT---CEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hCC---CcEEEecCCCHHHHHHHHcCCCEEE
Confidence 3567887777 77777776655322 58999999998887665 233 4566677654321100124679998
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
.-.|
T Consensus 75 ~~~~ 78 (118)
T 3ic5_A 75 SAAP 78 (118)
T ss_dssp ECSC
T ss_pred ECCC
Confidence 7554
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=81.34 E-value=2.8 Score=40.33 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=40.2
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 238 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
.+++|++||=.|+|+ |..+.++++.++ ..+|+++|.++++++.++ .+|.+.+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~----~lGa~~~ 220 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAR----EVGADAA 220 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHH----HTTCSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEE
Confidence 578999999998865 556677777663 369999999999998764 4787643
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.21 E-value=3.2 Score=40.06 Aligned_cols=53 Identities=23% Similarity=0.162 Sum_probs=39.2
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++|++||-.|+|+ |..+.+++..++ .+|+++|.++++++.++ .+|.+.
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~ 215 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAK----NCGADV 215 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCE
Confidence 345788999999998754 455666666653 46999999999988764 468763
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=81.11 E-value=4.5 Score=37.96 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~-G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.|.+||=.|++. ++.+..++..+. ...+|+.+|.+++..+.+.+..+..| .+.++..|+.+...-. ..+
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEEW 106 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 367888777764 477877777653 34689999999877777777666665 3567888887643110 112
Q ss_pred CCccEEEEcCCCC
Q 013515 312 SEVRAILLDPSCS 324 (441)
Q Consensus 312 ~~fD~Il~DpPCS 324 (441)
+.+|.++..+-..
T Consensus 107 g~iD~lVnnAG~~ 119 (296)
T 3k31_A 107 GSLDFVVHAVAFS 119 (296)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 5789999877543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=81.07 E-value=3.2 Score=37.38 Aligned_cols=81 Identities=10% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.++++.+. ...+|++++.++..++.+.+.+.. .+. ++.++.+|..+...-. ..++
T Consensus 7 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (248)
T 2pnf_A 7 GKVSL-VTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGV-KAHGVEMNLLSEESINKAFEEIYNLVD 84 (248)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 55666 56678999999887653 346899999999888877776655 453 5778888887643110 0124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+...
T Consensus 85 ~~d~vi~~Ag~~ 96 (248)
T 2pnf_A 85 GIDILVNNAGIT 96 (248)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=81.02 E-value=2.3 Score=41.08 Aligned_cols=54 Identities=26% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++|++||=.|+|+ |..+.+++..+ +..+|+++|.++++++.++ .+|.+.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 214 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIAL----EYGATD 214 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHH----HHTCCE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCce
Confidence 456788999999998765 45556666654 3348999999999888764 468753
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.78 E-value=3 Score=38.09 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC----cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-------C
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK----GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-------A 310 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~----~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-------~ 310 (441)
+.+|| +..|+|+.+.++++.+... .+|++++.++..++.+.+..+ .+ .++.++.+|+.+...-.. .
T Consensus 21 ~k~vl-ITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~-~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 97 (267)
T 1sny_A 21 MNSIL-ITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-NH-SNIHILEIDLRNFDAYDKLVADIEGV 97 (267)
T ss_dssp CSEEE-ESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH-HC-TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred CCEEE-EECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhc-cC-CceEEEEecCCChHHHHHHHHHHHHh
Confidence 55666 5556899999998876543 489999998776655543333 23 368888999886542110 0
Q ss_pred CC--CccEEEEcCCC
Q 013515 311 YS--EVRAILLDPSC 323 (441)
Q Consensus 311 ~~--~fD~Il~DpPC 323 (441)
++ .+|.|+..+-.
T Consensus 98 ~g~~~id~li~~Ag~ 112 (267)
T 1sny_A 98 TKDQGLNVLFNNAGI 112 (267)
T ss_dssp HGGGCCSEEEECCCC
T ss_pred cCCCCccEEEECCCc
Confidence 12 58999987654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=80.47 E-value=3.6 Score=37.62 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+||=. .|+|+.+.+++..+. ...+|+.+|.+.+.++.+.+.+ + .++.++..|..+...-. ..++
T Consensus 7 ~~k~vlVT-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 7 EGKSALIT-GSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G-PAAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TTCEEEEE-TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 46677744 467888888887653 3468999999988877665543 4 35778888987643110 1234
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
.+|.++..+.-+.
T Consensus 82 ~id~lv~~Ag~~~ 94 (259)
T 4e6p_A 82 GLDILVNNAALFD 94 (259)
T ss_dssp SCCEEEECCCCCC
T ss_pred CCCEEEECCCcCC
Confidence 7899999776543
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=80.46 E-value=4.1 Score=36.65 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVAC-ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~-D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|+++ +.++..++.+.+.++..+. ++.++.+|..+...-. ..++
T Consensus 5 ~~~vl-ItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 5 GKTAI-VTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGI-NVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TCEEE-ESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTC-CEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CcEEE-EECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 55677 55677889998887663 33588888 6677777777666766663 5788889987643110 0123
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+...
T Consensus 83 ~~d~vi~~Ag~~ 94 (247)
T 2hq1_A 83 RIDILVNNAGIT 94 (247)
T ss_dssp CCCEEEECC---
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=80.45 E-value=4.6 Score=38.23 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.+|| +..|+|+.+.+++..+. ...+|++++.++.....+.... .+.- .+++++.+|..+...-......+|.|+
T Consensus 5 ~~~vl-VTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 82 (337)
T 2c29_D 5 SETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLL-DLPKAETHLTLWKADLADEGSFDEAIKGCTGVF 82 (337)
T ss_dssp -CEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHH-TSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred CCEEE-EECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHH-hcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 56777 67789999999987653 3357888887765333222211 1110 257888899876543211124579998
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
.-+.
T Consensus 83 h~A~ 86 (337)
T 2c29_D 83 HVAT 86 (337)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 7653
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=80.45 E-value=4.6 Score=37.11 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCC---HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------C
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELN---KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------P 309 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~---~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~ 309 (441)
.|.+||=. .|+||.+..++..+.. ..+|+.++.+ .+.++.+.+.++..|. ++.++..|..+...-. .
T Consensus 10 ~~k~vlVT-Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIA-GGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEE-TCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 36677744 4567788888887644 3578887654 5566666666665553 6888889988644210 1
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHH----HHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLN----KLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~----~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
.++.+|.++..+-....+.+. | .+.++.. ........+++.++..++ +|.+|+.+.
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~---~--------------~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS 148 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIV---E--------------TSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT 148 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGG---G--------------CCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred HcCCCCEEEECCCCCCCCCcc---c--------------CCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 124689999876543322111 0 1233333 233344556777777654 577877654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=80.44 E-value=4.6 Score=36.62 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
+.+|| +..|+|+.+.+++..+. ...+|+.++. +.+.++.+.+.++..|. ++.++.+|..+...-. ..++
T Consensus 4 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSAL-VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 44556 66677888998887663 3357888777 56888888888887774 5778888987643210 1124
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
.+|.++..+.-+.
T Consensus 82 ~id~lv~nAg~~~ 94 (246)
T 3osu_A 82 SLDVLVNNAGITR 94 (246)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7899998776443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.27 E-value=2.6 Score=41.13 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=38.8
Q ss_pred hCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 237 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
+++++|++||-.|+|+ |..+.+++..++ .+|+++|.++++++.+++ +|.+.
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~----lGa~~ 241 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA----LGADE 241 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCcE
Confidence 4788999999998865 555666776653 479999999999887653 68754
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=80.22 E-value=5.1 Score=38.04 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN------------KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~------------~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.|.+|| +..|+||.+..++..+. ...+|+.+|.+ .+.++.+.+.++..|. ++.++..|..+...-
T Consensus 45 ~gk~~l-VTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 45 QGKVAF-ITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLASL 122 (317)
T ss_dssp TTCEEE-ESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred CCCEEE-EeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 366677 56667888888887663 34689999886 7778777777777764 578888998764311
Q ss_pred C-------CCCCCccEEEEcCCCCC
Q 013515 308 D-------PAYSEVRAILLDPSCSG 325 (441)
Q Consensus 308 ~-------~~~~~fD~Il~DpPCSg 325 (441)
. ..++.+|+++.++-.+.
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~~~ 147 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGISN 147 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC
Confidence 0 11347899999776543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=80.21 E-value=9.8 Score=34.13 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.++++.+. ...+|++++.++..++.+.+.+... .++.++.+|..+...-. ..++.
T Consensus 6 ~k~vl-VtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (251)
T 1zk4_A 6 GKVAI-ITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CcEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc--CceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 55666 66678899999887653 3468999999988777665544322 46888889987643110 01235
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.|+..+..
T Consensus 83 id~li~~Ag~ 92 (251)
T 1zk4_A 83 VSTLVNNAGI 92 (251)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987653
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=80.15 E-value=5 Score=37.07 Aligned_cols=82 Identities=9% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+||.+.+++..+. ...+|+.++. +...++.+.+.++..|. .+.++..|+.+...-. ..++
T Consensus 28 ~k~vl-VTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~~~~~~~~~~g 105 (269)
T 4dmm_A 28 DRIAL-VTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQESEVEALFAAVIERWG 105 (269)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56666 55667888888887663 3458888888 78888888888877764 5778889988744210 1124
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
.+|.++..+--+.
T Consensus 106 ~id~lv~nAg~~~ 118 (269)
T 4dmm_A 106 RLDVLVNNAGITR 118 (269)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7899999876443
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.14 E-value=0.95 Score=43.13 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC--CCccEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY--SEVRAIL 318 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~--~~fD~Il 318 (441)
+.+|| +..|+|+.+.++++.+. ...+|++++.+........+.+....-.++.++.+|..+...-..-. ..+|.|+
T Consensus 5 ~~~vl-VTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 5 KGTIL-VTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SCEEE-EETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CcEEE-EecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 55777 55678999999987663 34689999987655544444444432245788889987643111001 2579998
Q ss_pred EcCCCC
Q 013515 319 LDPSCS 324 (441)
Q Consensus 319 ~DpPCS 324 (441)
..+..+
T Consensus 84 h~A~~~ 89 (341)
T 3enk_A 84 HFAALK 89 (341)
T ss_dssp ECCCCC
T ss_pred ECcccc
Confidence 866543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=80.13 E-value=7.8 Score=35.86 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKE-RVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~-rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+.+++..+. ...+|+.++.+.. ..+.+.+.++..|. ++.++..|..+...-. ..++
T Consensus 29 ~k~vl-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 106 (283)
T 1g0o_A 29 GKVAL-VTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIFG 106 (283)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 55666 56667889998887663 3358999998854 45656666666664 5778888887643110 1124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.++..+--.
T Consensus 107 ~iD~lv~~Ag~~ 118 (283)
T 1g0o_A 107 KLDIVCSNSGVV 118 (283)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 689999877543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 441 | ||||
| d2b9ea1 | 293 | c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) | 5e-35 | |
| d1ixka_ | 313 | c.66.1.38 (A:) Hypothetical methyltransferase PH13 | 4e-22 | |
| d1sqga2 | 284 | c.66.1.38 (A:145-428) Ribosomal RNA small subunit | 5e-21 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-09 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-08 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 3e-07 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 6e-07 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-06 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 7e-05 | |
| d1wxxa2 | 318 | c.66.1.51 (A:65-382) Hypothetical protein TTHA1280 | 9e-05 | |
| d2oyra1 | 250 | c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi | 6e-04 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 0.002 |
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (324), Expect = 5e-35
Identities = 106/248 (42%), Positives = 142/248 (57%), Gaps = 27/248 (10%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 209
PR+VRVNTLK D V +Q D L+P+LL+ P
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 210 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 269
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 270 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182
Query: 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVEN 389
+ +L+ S RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q EN
Sbjct: 183 SRQLEEPGAGTPSPV--------RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEEN 234
Query: 390 EDVIKSVL 397
EDV++ L
Sbjct: 235 EDVVRDAL 242
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 94.3 bits (233), Expect = 4e-22
Identities = 71/264 (26%), Positives = 117/264 (44%), Gaps = 15/264 (5%)
Query: 137 AIQLALAQLLVRNKVKSI-EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVV 194
++L ++L + E + + + + P PR RVNTLK+ V V L K+ F
Sbjct: 9 LLRLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQF 68
Query: 195 QKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPG 253
++ + L + P + G +++Q +S AL PKPG V D +APG
Sbjct: 69 KRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPG 128
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
KT +LA LM+ G I A ++++ R+R + + G N+ + H L++ + +
Sbjct: 129 GKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF-- 186
Query: 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373
ILLD C+GSG + + +++ L + L G
Sbjct: 187 -DKILLDAPCTGSG-------TIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 238
Query: 374 VERVVYSTCSIHQVENEDVIKSVL 397
+VYSTCS+ ENE VI+ L
Sbjct: 239 --ILVYSTCSLEPEENEFVIQWAL 260
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 90.5 bits (223), Expect = 5e-21
Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 13/244 (5%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLH 213
E ++ + + P ++R+N DS + L + + PD + L +H
Sbjct: 15 EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 74
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + A +
Sbjct: 75 ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVD 133
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 333
++++R+ R+ D +K G + ILLD CS +G
Sbjct: 134 IDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD--RILLDAPCSATGVIRRHP 191
Query: 334 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 393
D ++ L +L + +VY+TCS+ EN I
Sbjct: 192 DIK-------WLRRDRDIPELAQLQSEI--LDAIWPHLKTGGTLVYATCSVLPEENSLQI 242
Query: 394 KSVL 397
K+ L
Sbjct: 243 KAFL 246
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 6e-09
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 60 QYMLRRPALEDYVVLMK-RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSK 118
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAA-----------NIEVLHGDFLNLDPKDPA 310
+ +G++++ E+ K+ K K + N++ +H D +D
Sbjct: 119 AVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDIK 177
Query: 311 YSEVRAILLD 320
A+ LD
Sbjct: 178 SLTFDAVALD 187
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.8 bits (126), Expect = 1e-08
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 231 SMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
S +AA + + +VL +A G HLA ++ +G I A E + + +L +
Sbjct: 40 SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLE 98
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323
++ NI L D +V I D +
Sbjct: 99 LVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ 135
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.6 bits (115), Expect = 3e-07
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS-GTAAERLDHLLPSH 340
+ NI + GD + +V I D + + + L
Sbjct: 116 P--IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG 171
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 48.1 bits (114), Expect = 6e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 181 VDSAVLELGKQFVVQKDDLVP----DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 236
V + LG V++ D + ++ +I + +S +
Sbjct: 22 VKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGR-VIRRNTQIISEIDASYIIMR 80
Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296
+PG +L+ GN + ++ + GKG + E +++ +++ D +
Sbjct: 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR 140
Query: 297 LHGDFLNLDPKDPAYSEVRAILLDPSC 323
+ D Y V A + DP
Sbjct: 141 TSRSDIADFISDQMYDAVIADIPDPWN 167
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.7 bits (113), Expect = 1e-06
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
K ++ + PG +VL+A + G T+ L + G++++ E + + +
Sbjct: 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142
Query: 288 LSGAA---NIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
N ++ D + + D + +L P
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAP 179
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 41.3 bits (96), Expect = 7e-05
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG- 290
++ P +D G T+ L ++ A + N E + + ++ G
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLE---LAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 291 AANIEVLHGDFLNLDPKDPAYSEVRAI 317
N+ ++ GD K P
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVG 107
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Score = 41.8 bits (97), Expect = 9e-05
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
+ G + LD S G +HL G ++VA + + E +RR ++ +L+G
Sbjct: 136 ENRLYMERFRGERALDVFSYAGGFALHL---ALGFREVVAVDSSAEALRRAEENARLNGL 192
Query: 292 ANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 350
N+ VL + +L + E ++LDP P+ A G
Sbjct: 193 GNVRVLEANAFDLLRRLEKEGERFDLVVLDP----------------PAFAKGKKDVERA 236
Query: 351 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH 385
+++ K L+ G + ++CS H
Sbjct: 237 YRAYKEVNLRAIKLLK-----EG-GILATASCSHH 265
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Score = 39.2 bits (91), Expect = 6e-04
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 227 GKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
G VA A+ K V+DA + G LA++ ++ E N L D
Sbjct: 72 GGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDD 128
Query: 285 TIKLSGA---------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDH 335
+ A ++++H L +V + LDP +A
Sbjct: 129 GLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV--VYLDPMFPHKQKSALVKKE 186
Query: 336 L-LPSHASGHTADPTEMERLNKLSAFQK 362
+ + G D + +L A ++
Sbjct: 187 MRVFQSLVGPDLDADGLLEPARLLATKR 214
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 37.1 bits (85), Expect = 0.002
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
V L P+ +LD G + + G +I+ +++ E +R ++ +K
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-D 72
Query: 293 NIEVLHGDFLNLD--PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 350
+ + + D K +V IL+D S +L +
Sbjct: 73 RVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS-----TYQLKGENRELENLKEFLKKA 127
Query: 351 MERLNKLSAF 360
+ LN
Sbjct: 128 EDLLNPGGRI 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 441 | |||
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 100.0 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 100.0 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.84 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.78 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.78 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.68 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.68 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.67 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.63 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.61 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.58 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.55 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.53 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.49 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.48 | |
| d1sqga1 | 140 | Ribosomal RNA small subunit methyltransferase B, R | 99.48 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.47 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.45 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.43 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.4 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.36 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.34 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.33 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.29 | |
| d1ey1a_ | 139 | Antitermination factor NusB {Escherichia coli [Tax | 99.27 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.24 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.24 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.22 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.22 | |
| d1tzva_ | 141 | Antitermination factor NusB {Thermotoga maritima [ | 99.21 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.21 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.15 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.14 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.14 | |
| d1eyva_ | 131 | Antitermination factor NusB {Mycobacterium tubercu | 99.12 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.12 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.12 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.11 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.09 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.08 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.08 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.08 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.06 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.05 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.04 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.01 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.01 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.01 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.0 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.0 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.98 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.97 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.97 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.96 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.95 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.93 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.89 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.87 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.8 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.78 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.77 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.77 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.76 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.76 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.75 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.74 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.72 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.72 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.71 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.71 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.67 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.66 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.66 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.65 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.59 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.51 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.47 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.41 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.38 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.36 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.33 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.27 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.18 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.17 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.15 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.91 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.85 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.84 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.78 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.78 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.62 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.51 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.43 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.41 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.27 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.25 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.25 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.18 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.1 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.86 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.7 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.69 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 95.86 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.81 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.55 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.2 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.15 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.0 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 94.69 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.44 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 94.17 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.05 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.92 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.79 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.64 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.63 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.59 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.15 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.14 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.91 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.89 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 92.53 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.03 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.01 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.83 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.25 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.07 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.82 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.18 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.57 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.49 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.05 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.75 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.65 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.4 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.22 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 84.58 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.92 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 83.83 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 83.78 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.55 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 81.78 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.66 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.5 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 81.16 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.7 |
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.9e-57 Score=436.05 Aligned_cols=264 Identities=42% Similarity=0.678 Sum_probs=220.5
Q ss_pred CCceEEecCCCCCHHHHHHHHcc-cCc------------------ccccCCCCCeEEeCCCCCCCCChhhhcCcccccch
Q 013515 168 KPRYVRVNTLKMDVDSAVLELGK-QFV------------------VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGK 228 (441)
Q Consensus 168 ~p~~~RvN~~k~~~~~~~~~L~~-~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ 228 (441)
.|+|+||||+|++.+++.+.|++ ++. +..++++|+.+.+++...+..+++|++|++++||.
T Consensus 2 lP~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~G~~~~QD~ 81 (293)
T d2b9ea1 2 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDR 81 (293)
T ss_dssp CCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChHHhCcEEEEcCC
Confidence 69999999999999999999977 432 23467899999999888999999999999999999
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
+|++++.+|++++|++|||+||||||||+++++++++.++|+|+|+++.|++.++++++++|++|+.+...|+..+...+
T Consensus 82 sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~ 161 (293)
T d2b9ea1 82 ASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD 161 (293)
T ss_dssp GGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC
T ss_pred cccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999888766
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVE 388 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~E 388 (441)
+..++||+||+||||||+|+++++||.+|... ++..++..++++|+++|.+|+.+++||+|||||||++++|
T Consensus 162 ~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~--------~~~~~~~~l~~~Q~~il~~a~~l~~gG~lvYsTCSl~~~E 233 (293)
T d2b9ea1 162 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGT--------PSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEE 233 (293)
T ss_dssp GGGTTEEEEEECCCCCC--------------------------CCHHHHHHHHHHHHHHHTTCTTCCEEEEEESCCCGGG
T ss_pred cccceeeEEeecCcccchhhhcccchhhccCC--------cchhhHHHHhhhhHHhHHHhhhcccccEEEEeeccCChhH
Confidence 55678999999999999999999999876431 2334578999999999999998766899999999999999
Q ss_pred cHHHHHHHhchhcCCC-eEEecCCCCCCCcccccc--ccceeeeecccCCCCCCCC
Q 013515 389 NEDVIKSVLPIAMSFG-FQLATPFPNGTAEASQFL--KALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~f~p~~~~~~g~~~ 441 (441)
||+||++||+. +++ |++++..|.|...+.... ...++|+.|+.+.+.|+|+
T Consensus 234 Ne~vV~~~L~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 287 (293)
T d2b9ea1 234 NEDVVRDALQQ--NPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFV 287 (293)
T ss_dssp THHHHHHHHTT--STTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHHHSSCSEEE
T ss_pred hHHHHHHHHHh--CCCCEEeccCcccccccccccCCCCCCEEEECCCCCCccCEEE
Confidence 99999999963 554 888888899988764432 1234899999999999995
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.5e-57 Score=445.41 Aligned_cols=269 Identities=29% Similarity=0.406 Sum_probs=226.6
Q ss_pred HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCC-CCCCCChhhhcCcccccchhhH
Q 013515 154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASS 231 (441)
Q Consensus 154 ~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~~~~Qd~ss~ 231 (441)
.+++++ +++.++|+|+|||+.|.+++++++.|++ |+.+++++++|+++.+..+ ..+..+++|++|++++||.+|+
T Consensus 30 ~~~l~~---a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~~vQD~aS~ 106 (313)
T d1ixka_ 30 AIRIAE---AMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSM 106 (313)
T ss_dssp HHHHHH---HTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCGGGSHHHHTTSEEECCHHHH
T ss_pred HHHHHH---HcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEECCCCcchhhhccCCCccccCHhhhhceEEEeccccc
Confidence 445554 4567899999999999999999999987 7888999999999988543 5788999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+++.+|++++|++|||+||||||||++++.++.+.+.|+|+|+++.|++.++++++++|+.|+.++..|...++...
T Consensus 107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~--- 183 (313)
T d1ixka_ 107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELN--- 183 (313)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGC---
T ss_pred chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccc---
Confidence 99999999999999999999999999999999989999999999999999999999999999999999988776443
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
..||.||+||||||+|+++++||++|. ++++++.+++++|.+||.+|+++++ ||+|||||||++++|||
T Consensus 184 ~~fD~ILvDaPCSg~G~~~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE 253 (313)
T d1ixka_ 184 VEFDKILLDAPCTGSGTIHKNPERKWN----------RTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENE 253 (313)
T ss_dssp CCEEEEEEECCTTSTTTCC------------------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTH
T ss_pred ccccEEEEccccccCCceeeccchhhh----------hhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHH
Confidence 679999999999999999999998764 3689999999999999999999988 79999999999999999
Q ss_pred HHHHHHhchhcCCCeEEecCC---CCCCCc-ccccc--ccceeeeecccCCCCCCCC
Q 013515 391 DVIKSVLPIAMSFGFQLATPF---PNGTAE-ASQFL--KALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~~~~~---~~~~~~-~~~~~--~~~~~~f~p~~~~~~g~~~ 441 (441)
+||++||+ +.+|++++.. |.|... +..+. ...++|+.|+.+.+.|+|+
T Consensus 254 ~VV~~~L~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 307 (313)
T d1ixka_ 254 FVIQWALD---NFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFI 307 (313)
T ss_dssp HHHHHHHH---HSSEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEE
T ss_pred HHHHHHHh---cCCCEEeecccCCccccCccccccccccCCcEEECCCCCCcccEEE
Confidence 99999996 3467776543 233221 11111 1234899999999999984
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-57 Score=439.19 Aligned_cols=269 Identities=22% Similarity=0.254 Sum_probs=230.6
Q ss_pred HHHHcccccHHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcc
Q 013515 145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCV 223 (441)
Q Consensus 145 ~~~~~~~~~~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~ 223 (441)
|...++ +..+++++. ++.++|+|+|||+.+++++++.+.|++ ++...+++++|+++.++....+..++.|.+|++
T Consensus 9 ~~~~~g-ee~~~l~~a---~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~~~~p~~l~l~~~~~l~~~~~~~~G~~ 84 (284)
T d1sqga2 9 LQKAYP-EQWQSIVEA---NNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWV 84 (284)
T ss_dssp HHHHCT-TTHHHHHHH---HTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSE
T ss_pred HHHHCH-HHHHHHHHH---CCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeecCCCCccceeccccchhhChhhhccEE
Confidence 333444 345566654 456889999999999999999999988 777888889999999988888999999999999
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
++||.+||+++.+|++++|++|||+||||||||++|++++.+ +.|+|+|+++.|++.++++++++|++++.+...|...
T Consensus 85 ~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~ 163 (284)
T d1sqga2 85 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP 163 (284)
T ss_dssp EECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred EeccccccccccccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence 999999999999999999999999999999999999998654 8999999999999999999999999888777766543
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
..... ...||+||+||||||+|+++|+||++|. ++++++.+++++|++||.+|+++++ ||+||||||
T Consensus 164 ~~~~~--~~~fd~IL~DaPCSg~G~~rr~p~~~~~----------~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 164 SQWCG--EQQFDRILLDAPCSATGVIRRHPDIKWL----------RRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp HHHHT--TCCEEEEEEECCCCCGGGTTTCTTHHHH----------CCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred chhcc--cccccEEEEeccccccCccccccchhhc----------cccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 32222 2579999999999999999999998763 3578899999999999999999988 799999999
Q ss_pred CCCChhcHHHHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 383 SIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 383 S~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
|++++|||+||++||+ .+++|++++... + . ...+++.|+.+.+.|+|+
T Consensus 232 S~~~~ENE~vv~~~l~--~~~~~~~~~~~~--~-----~--~~~~~~~P~~~~~dGFF~ 279 (284)
T d1sqga2 232 SVLPEENSLQIKAFLQ--RTADAELCETGT--P-----E--QPGKQNLPGAEEGDGFFY 279 (284)
T ss_dssp CCCGGGTHHHHHHHHH--HCTTCEECSSBC--S-----S--SBSEEECCCTTSCCSEEE
T ss_pred cCchhhCHHHHHHHHH--hCCCcEEecCCC--C-----C--CCcEEECCCCCCcccEEE
Confidence 9999999999999996 477898866321 1 1 123789999999999995
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.5e-21 Score=189.77 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=128.9
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
...++.|.|..|.....++ ....|.+|||+|||+|+++++++.. ..+|+++|+|+.+++.+++|++++|++++
T Consensus 123 ~~~~~tG~flDqr~~r~~~----~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~ 195 (318)
T d1wxxa2 123 RAGQKTGAYLDQRENRLYM----ERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNV 195 (318)
T ss_dssp STTSCCCCCGGGHHHHHHG----GGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTE
T ss_pred hhccccccchhhhhhHHHH----HHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCc
Confidence 4678999999998775432 3346999999999999999998753 46999999999999999999999999999
Q ss_pred EEEeccCCCCCCCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 013515 295 EVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373 (441)
Q Consensus 295 ~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~ 373 (441)
+++++|+.++.... ...++||.|++||||++.+. .++......|.+++..++++++
T Consensus 196 ~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~-----------------------~~~~~~~~~~~~l~~~a~~lLk 252 (318)
T d1wxxa2 196 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGK-----------------------KDVERAYRAYKEVNLRAIKLLK 252 (318)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCST-----------------------TSHHHHHHHHHHHHHHHHHTEE
T ss_pred ceeeccHHHHhhhhHhhhcCCCEEEEcCCccccch-----------------------HHHHHHHHHHHHHHHHHHHHcC
Confidence 99999987653211 01268999999999987652 2345667788999999999988
Q ss_pred -CcEEEEEcCC--CCChhcHHHHHHHhchhcCCCeEE
Q 013515 374 -VERVVYSTCS--IHQVENEDVIKSVLPIAMSFGFQL 407 (441)
Q Consensus 374 -~G~lvYsTCS--~~~~ENe~vV~~~l~~~~~~~~~~ 407 (441)
||.|||+||| +..++-+++|.+....+ +..+++
T Consensus 253 pGG~Lv~~scs~~~~~~~f~~~v~~a~~~a-~~~~~~ 288 (318)
T d1wxxa2 253 EGGILATASCSHHMTEPLFYAMVAEAAQDA-HRLLRV 288 (318)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCCEEEEEeCCcccCHHHHHHHHHHHHHHc-CCCEEE
Confidence 7999999999 56677788888777543 334444
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=2.6e-19 Score=174.40 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=125.3
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-Cc
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-AN 293 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~ 293 (441)
...++.|.|..|.....++..++ ++|++|||+|||+|+++++++.. +..+|+++|+++.+++.+++|++.+|+ ++
T Consensus 121 ~~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~ 196 (324)
T d2as0a2 121 MRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDR 196 (324)
T ss_dssp SSSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGG
T ss_pred ccccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCcc
Confidence 34678999999999888887665 57999999999999999998764 456999999999999999999999999 57
Q ss_pred EEEEeccCCCCCCCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 294 IEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 294 v~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
++++++|+.+..... ....+||+|++||||++.+ .++.....+.+.+++..|++++
T Consensus 197 ~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~-----------------------~~~~~~~~~~y~~l~~~a~~ll 253 (324)
T d2as0a2 197 MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH-----------------------EKDLKAGLRAYFNVNFAGLNLV 253 (324)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS-----------------------GGGHHHHHHHHHHHHHHHHTTE
T ss_pred ceeeechhhhhhHHHHhccCCCCchhcCCccccCC-----------------------HHHHHHHHHHHHHHHHHHHHHc
Confidence 999999987643110 0126899999999997643 2234556677889999999998
Q ss_pred C-CcEEEEEcCCCCChh--cHHHHHHHhc
Q 013515 373 G-VERVVYSTCSIHQVE--NEDVIKSVLP 398 (441)
Q Consensus 373 ~-~G~lvYsTCS~~~~E--Ne~vV~~~l~ 398 (441)
+ ||.|||||||.+-.. -.++|.+...
T Consensus 254 ~pGG~lv~~s~s~~~~~~~f~~~v~~a~~ 282 (324)
T d2as0a2 254 KDGGILVTCSCSQHVDLQMFKDMIIAAGA 282 (324)
T ss_dssp EEEEEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCccCCHHHHHHHHHHHHH
Confidence 8 799999999976543 3466665553
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.78 E-value=1.3e-19 Score=175.56 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=119.1
Q ss_pred CChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--
Q 013515 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-- 291 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-- 291 (441)
....++.|.|..|......++.. ..+|.+|||+|||+|+++++++. ++...|+++|+++.+++.+++|++.+|+
T Consensus 119 l~~g~ktGlflDqR~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~--~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~ 194 (317)
T d2b78a2 119 LNDGLMTGIFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAM--GGAMATTSVDLAKRSRALSLAHFEANHLDM 194 (317)
T ss_dssp SSSSSCCSSCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHH--TTBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred cccccccCCcHHHHHHHHHHHHH--hhCCCceeecCCCCcHHHHHHHh--CCCceEEEecCCHHHHHHHHHHHHHhcccC
Confidence 34678999999998765544333 34699999999999999998765 3557899999999999999999999998
Q ss_pred CcEEEEeccCCCCCCCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC
Q 013515 292 ANIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS 370 (441)
Q Consensus 292 ~~v~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~ 370 (441)
++++++.+|+.+..... ....+||.|++|||+.+.. ++.+....+.+.+++..|++
T Consensus 195 ~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~-----------------------~~~~~~~~~~~~~L~~~a~~ 251 (317)
T d2b78a2 195 ANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARN-----------------------KKEVFSVSKDYHKLIRQGLE 251 (317)
T ss_dssp TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC----------------------------CCCCHHHHHHHHHHHHHH
T ss_pred cceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccc-----------------------hhHHHHHHHHHHHHHHHHHH
Confidence 47999999997653211 1126899999999987532 11122345567789999999
Q ss_pred CCC-CcEEEEEcCCCC--ChhcHHHHHHHhc
Q 013515 371 FPG-VERVVYSTCSIH--QVENEDVIKSVLP 398 (441)
Q Consensus 371 ~~~-~G~lvYsTCS~~--~~ENe~vV~~~l~ 398 (441)
+++ ||.|+|||||-+ .++-+.+|.+.+.
T Consensus 252 ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~ 282 (317)
T d2b78a2 252 ILSENGLIIASTNAANMTVSQFKKQIEKGFG 282 (317)
T ss_dssp TEEEEEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCEEEEEeCCccCCHHHHHHHHHHHHH
Confidence 987 799999999954 4444577777664
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=3e-17 Score=153.18 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=108.7
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~ 306 (441)
+.+.+++..++++||++|||+|||+|+.|..||+.+++.|+|+++|+++++++.+++|+++++ ..||++.++|+.+..+
T Consensus 72 kD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~ 151 (250)
T d1yb2a1 72 IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS 151 (250)
T ss_dssp ---------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC
T ss_pred HHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc
Confidence 334456678999999999999999999999999999888999999999999999999999874 5899999999987643
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE-EEEcCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV-VYSTCSI 384 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l-vYsTCS~ 384 (441)
. ..||.|++|.|.. | ..|.++.+.|+ ||.+ +|+.|.
T Consensus 152 ~----~~fD~V~ld~p~p------------------------~-------------~~l~~~~~~LKpGG~lv~~~P~i- 189 (250)
T d1yb2a1 152 D----QMYDAVIADIPDP------------------------W-------------NHVQKIASMMKPGSVATFYLPNF- 189 (250)
T ss_dssp S----CCEEEEEECCSCG------------------------G-------------GSHHHHHHTEEEEEEEEEEESSH-
T ss_pred c----ceeeeeeecCCch------------------------H-------------HHHHHHHHhcCCCceEEEEeCCc-
Confidence 3 6799999998831 1 34788888887 6755 477664
Q ss_pred CChhcHHHHHHHhchhcCCCeEEecC----CCCCCCccccccc
Q 013515 385 HQVENEDVIKSVLPIAMSFGFQLATP----FPNGTAEASQFLK 423 (441)
Q Consensus 385 ~~~ENe~vV~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~ 423 (441)
+++.++++.....+|..++. ...|..++...++
T Consensus 190 ------~Qv~~~~~~l~~~gf~~i~~~E~~~R~~~~~~~~~RP 226 (250)
T d1yb2a1 190 ------DQSEKTVLSLSASGMHHLETVELMKRRILVREGATRP 226 (250)
T ss_dssp ------HHHHHHHHHSGGGTEEEEEEEEEEECCCCCCTTCCCC
T ss_pred ------ChHHHHHHHHHHCCCceeEEEEEEeEEEEEcCCccCC
Confidence 56666666555567765433 3456655544433
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.3e-16 Score=150.43 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=114.8
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEe
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLH 298 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~ 298 (441)
.+--++..+.+.+++..++++||++|||+|||+|+.|.++|+.+++.|+|+++|+++++++.+++++++.|+ +++.+..
T Consensus 82 r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~ 161 (266)
T d1o54a_ 82 RRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV 161 (266)
T ss_dssp C-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC
T ss_pred CCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe
Confidence 344556667788999999999999999999999999999999998889999999999999999999999997 6898888
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV 377 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l 377 (441)
.|+...... ..||.|++|.|. | | +.|+++.+.|| ||.+
T Consensus 162 ~d~~~~~~~----~~~D~V~~d~p~---------p---------------~-------------~~l~~~~~~LKpGG~l 200 (266)
T d1o54a_ 162 RDISEGFDE----KDVDALFLDVPD---------P---------------W-------------NYIDKCWEALKGGGRF 200 (266)
T ss_dssp CCGGGCCSC----CSEEEEEECCSC---------G---------------G-------------GTHHHHHHHEEEEEEE
T ss_pred ccccccccc----cceeeeEecCCC---------H---------------H-------------HHHHHHHhhcCCCCEE
Confidence 887543322 579999999883 1 1 45788888777 6755
Q ss_pred -EEEcCCCCChhcHHHHHHHhchhcCCCeEEecCCC
Q 013515 378 -VYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 412 (441)
Q Consensus 378 -vYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~ 412 (441)
+|+.|. +++.++++.....+|..++.+.
T Consensus 201 v~~~P~~-------~Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 201 ATVCPTT-------NQVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp EEEESSH-------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred EEEeCcc-------cHHHHHHHHHHHCCceeEEEEE
Confidence 588775 5666666555556787555444
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=1.5e-16 Score=149.31 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=111.3
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC---CCcEE
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIE 295 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g---~~~v~ 295 (441)
+.+.-++..+.+.+++..++++||++|||+|||+|..|.+||..+++.|+|+++|+++++++.+++|+++.+ .+|+.
T Consensus 74 ~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~ 153 (264)
T d1i9ga_ 74 PRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWR 153 (264)
T ss_dssp CSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEE
T ss_pred cCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEE
Confidence 334445666778889999999999999999999999999999999999999999999999999999999863 47999
Q ss_pred EEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C
Q 013515 296 VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V 374 (441)
Q Consensus 296 ~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~ 374 (441)
+.++|+.+....+ .+||.|++|.|. | | +.+.++.+.|+ |
T Consensus 154 ~~~~d~~~~~~~~---~~fDaV~ldlp~---------P---------------~-------------~~l~~~~~~LkpG 193 (264)
T d1i9ga_ 154 LVVSDLADSELPD---GSVDRAVLDMLA---------P---------------W-------------EVLDAVSRLLVAG 193 (264)
T ss_dssp EECSCGGGCCCCT---TCEEEEEEESSC---------G---------------G-------------GGHHHHHHHEEEE
T ss_pred EEecccccccccC---CCcceEEEecCC---------H---------------H-------------HHHHHHHhccCCC
Confidence 9999998765543 789999999883 1 1 44777888777 5
Q ss_pred c-EEEEEcCCCCChhcHHHHHHHhchhc-CCCeEE
Q 013515 375 E-RVVYSTCSIHQVENEDVIKSVLPIAM-SFGFQL 407 (441)
Q Consensus 375 G-~lvYsTCS~~~~ENe~vV~~~l~~~~-~~~~~~ 407 (441)
| .++|+.|. +++.++++..+ +.+|..
T Consensus 194 G~lv~~~P~i-------~Qv~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 194 GVLMVYVATV-------TQLSRIVEALRAKQCWTE 221 (264)
T ss_dssp EEEEEEESSH-------HHHHHHHHHHHHHSSBCC
T ss_pred CEEEEEeCcc-------ChHHHHHHHHHHcCCeec
Confidence 6 55666554 56666665432 334643
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.2e-15 Score=147.52 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=108.8
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----------CC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------AA 292 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----------~~ 292 (441)
++-.+.+.+++..|+++||++|||+|||+|+.|.+||..+++.|+|+++|+++++++.+++|+++.+ .+
T Consensus 81 iiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~ 160 (324)
T d2b25a1 81 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 160 (324)
T ss_dssp CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred ccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 3445567788889999999999999999999999999999989999999999999999999999764 25
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
|+.+.++|+........ ...||.|++|.|- | | ..|.++.+.|
T Consensus 161 nv~~~~~di~~~~~~~~-~~~fD~V~LD~p~---------P---------------~-------------~~l~~~~~~L 202 (324)
T d2b25a1 161 NVDFIHKDISGATEDIK-SLTFDAVALDMLN---------P---------------H-------------VTLPVFYPHL 202 (324)
T ss_dssp CEEEEESCTTCCC--------EEEEEECSSS---------T---------------T-------------TTHHHHGGGE
T ss_pred ceeEEecchhhcccccC-CCCcceEeecCcC---------H---------------H-------------HHHHHHHHhc
Confidence 89999999987654322 2579999999882 2 1 3478888888
Q ss_pred C-Cc-EEEEEcCCCCChhcHHHHHHHhchhc--CCCeEEecC
Q 013515 373 G-VE-RVVYSTCSIHQVENEDVIKSVLPIAM--SFGFQLATP 410 (441)
Q Consensus 373 ~-~G-~lvYsTCS~~~~ENe~vV~~~l~~~~--~~~~~~~~~ 410 (441)
+ || .++|+.|. ++|.+.++..+ +.+|..+++
T Consensus 203 KpGG~lv~~~P~i-------~Qv~~~~~~l~~~~~~f~~i~~ 237 (324)
T d2b25a1 203 KHGGVCAVYVVNI-------TQVIELLDGIRTCELALSCEKI 237 (324)
T ss_dssp EEEEEEEEEESSH-------HHHHHHHHHHHHHTCCEEEEEE
T ss_pred cCCCEEEEEeCCH-------HHHHHHHHHHHHcCCCceeeEE
Confidence 8 56 55699887 56666665332 446765443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.3e-15 Score=140.14 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=99.3
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.++||++|||+|||+|+.+.++|+.+++.|+|+|+|+++.+++.+++++++. .|+..+..|+............+|.
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCcccccccccceEE
Confidence 34789999999999999999999999998999999999999999999988765 4677888888765432222367999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE---cCCCCChhcHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS---TCSIHQVENEDV 392 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs---TCS~~~~ENe~v 392 (441)
|+.|.||... +..++.++.++|+ ||.++.+ .|.-...+.+.+
T Consensus 147 i~~d~~~~~~----------------------------------~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v 192 (227)
T d1g8aa_ 147 IFEDVAQPTQ----------------------------------AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQV 192 (227)
T ss_dssp EEECCCSTTH----------------------------------HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHH
T ss_pred EEEEccccch----------------------------------HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHH
Confidence 9999997421 1356888888777 6766543 344444444554
Q ss_pred HHHHhchhcCCCeEEec
Q 013515 393 IKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 393 V~~~l~~~~~~~~~~~~ 409 (441)
...+. .....+|++.+
T Consensus 193 ~~~v~-~l~~~gf~iie 208 (227)
T d1g8aa_ 193 FREVE-RELSEYFEVIE 208 (227)
T ss_dssp HHHHH-HHHHTTSEEEE
T ss_pred HHHHH-HHHHcCCEEEE
Confidence 44332 22345787755
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.58 E-value=5.5e-16 Score=148.24 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=116.9
Q ss_pred CCChhhhcCcccccchhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 013515 213 HVHPLIVNGCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291 (441)
Q Consensus 213 ~~~~~~~~g~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~ 291 (441)
...+.++.|.|..|......+...+. ...|.+|||+|||+|+++++++.. + .+|+++|.|+.+++.+++|++.+|+
T Consensus 103 ~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~--G-A~V~~VD~s~~al~~a~~N~~ln~~ 179 (309)
T d2igta1 103 RFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGL 179 (309)
T ss_dssp ECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred eccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC--C-CeEEEEeChHHHHHHHHHhhhhhcc
Confidence 34567899999999999988887654 456889999999999999988763 3 5899999999999999999999998
Q ss_pred C--cEEEEeccCCCCCCCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 013515 292 A--NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 368 (441)
Q Consensus 292 ~--~v~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a 368 (441)
. +++++++|+.++.... ....+||+|++|||+.+.|--. ..+ .+...+..++..+
T Consensus 180 ~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~----------------~~~------~~~~~~~~l~~~~ 237 (309)
T d2igta1 180 EQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHG----------------EVW------QLFDHLPLMLDIC 237 (309)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTC----------------CEE------EHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccc----------------hhH------HHHHHHHHHHHHH
Confidence 5 5999999997764211 1126799999999987655210 011 1222334577777
Q ss_pred hCCCC-Cc-EEEEEcCCCC--ChhcHHHHHHHhc
Q 013515 369 LSFPG-VE-RVVYSTCSIH--QVENEDVIKSVLP 398 (441)
Q Consensus 369 ~~~~~-~G-~lvYsTCS~~--~~ENe~vV~~~l~ 398 (441)
..+++ +| .|+.++||.. +.+=++.+...+.
T Consensus 238 ~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~ 271 (309)
T d2igta1 238 REILSPKALGLVLTAYSIRASFYSMHELMRETMR 271 (309)
T ss_dssp HHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 77776 45 5666666643 3444566666653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.55 E-value=7.5e-15 Score=131.00 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=100.2
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
..++...+++.+|++|||+|||+|..|..+|.. .++|+|+|+++.+++.+++|++++|+ ++|+++++|+.+.....
T Consensus 22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~ 98 (186)
T d1l3ia_ 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (186)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence 455556789999999999999999999998764 36999999999999999999999998 69999999998776553
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
..||.|+++.+- + + . ..+++.+.+.++ +|++|++.+ ..
T Consensus 99 ---~~~D~v~~~~~~---~----~------------------~----------~~~~~~~~~~LkpgG~lvi~~~---~~ 137 (186)
T d1l3ia_ 99 ---PDIDIAVVGGSG---G----E------------------L----------QEILRIIKDKLKPGGRIIVTAI---LL 137 (186)
T ss_dssp ---CCEEEEEESCCT---T----C------------------H----------HHHHHHHHHTEEEEEEEEEEEC---BH
T ss_pred ---CCcCEEEEeCcc---c----c------------------c----------hHHHHHHHHHhCcCCEEEEEee---cc
Confidence 679999987641 0 0 0 356888888877 688887644 44
Q ss_pred hcHHHHHHHhch
Q 013515 388 ENEDVIKSVLPI 399 (441)
Q Consensus 388 ENe~vV~~~l~~ 399 (441)
|+...+.+.++.
T Consensus 138 e~~~~~~~~l~~ 149 (186)
T d1l3ia_ 138 ETKFEAMECLRD 149 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 677777777753
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.53 E-value=2.3e-14 Score=130.17 Aligned_cols=135 Identities=24% Similarity=0.171 Sum_probs=104.3
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.++||++|||+|||+|+.+.++++.++ .++|+|+|+++.+++.+++++++.+ |+.++.+|+.........+..+|.
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence 5689999999999999999999999985 5799999999999999999998864 899999999886644333467888
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE---EEcCCCCChhcHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV---YSTCSIHQVENEDV 392 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv---YsTCS~~~~ENe~v 392 (441)
|+.|.++.. .+..+|.++.++++ ||.++ ++.|+-...+.+.+
T Consensus 129 v~~~~~~~~----------------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~ 174 (209)
T d1nt2a_ 129 IYQDIAQKN----------------------------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEV 174 (209)
T ss_dssp EEECCCSTT----------------------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHH
T ss_pred EEecccChh----------------------------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHH
Confidence 888877421 11356788888777 67654 44577777777888
Q ss_pred HHHHhchhcCCCeEEec
Q 013515 393 IKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 393 V~~~l~~~~~~~~~~~~ 409 (441)
.+...+.. ..+|++.+
T Consensus 175 ~~~~~~~l-~~gf~i~E 190 (209)
T d1nt2a_ 175 FKSVLKEM-EGDFKIVK 190 (209)
T ss_dssp HHHHHHHH-HTTSEEEE
T ss_pred HHHHHHHH-HcCCEEEE
Confidence 87776543 35787755
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=5.2e-14 Score=125.92 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=111.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPA 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~--~~~ 310 (441)
++.+|.+++|+.|||+|||+||+|.++++..+ .++|+|+|.++.+++.++++++.++ .++.++++++.++... ...
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHcC
Confidence 46778999999999999999999999999874 5899999999999999999999887 5799999999876421 111
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhc
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~EN 389 (441)
.++||.||+|.+||+.-. +....--..+.+.|..+...++ ||.++.. |++..|+
T Consensus 93 ~~~vdgIl~DlGvSs~Ql-----------------------d~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii--~f~s~Ed 147 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQL-----------------------KGENRELENLKEFLKKAEDLLNPGGRIVVI--SFHSLED 147 (192)
T ss_dssp CSCEEEEEEECSCCHHHH-----------------------HTSHTHHHHHHHHHHHGGGGEEEEEEEEEE--ESSHHHH
T ss_pred CCCcceeeeccchhHhhh-----------------------hhhhccchhHHHHHHHHHHhcCCCCeeeee--ccccHHH
Confidence 368999999999985311 0111223345678999999887 7888764 4666666
Q ss_pred HHHHHHHhchhcCCCeEEec
Q 013515 390 EDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 390 e~vV~~~l~~~~~~~~~~~~ 409 (441)
..|.+++.. ...+.+..
T Consensus 148 -r~vk~~f~~--~~~~~~i~ 164 (192)
T d1m6ya2 148 -RIVKETFRN--SKKLRILT 164 (192)
T ss_dssp -HHHHHHHHH--CSSEEESC
T ss_pred -HHHHHHHhh--ccccccCC
Confidence 678888853 45566543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.3e-13 Score=135.16 Aligned_cols=93 Identities=26% Similarity=0.295 Sum_probs=79.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PA 310 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~ 310 (441)
.+..++++.++++|||++||.|.+|+.||+. ..+|+|+|.++..++.+++|++.+|++|++++.+|........ ..
T Consensus 203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence 4455678889999999999999999999875 3799999999999999999999999999999999987755332 11
Q ss_pred CCCccEEEEcCCCCCCc
Q 013515 311 YSEVRAILLDPSCSGSG 327 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G 327 (441)
...+|.|++|||.+|.+
T Consensus 280 ~~~~d~vilDPPR~G~~ 296 (358)
T d1uwva2 280 KNGFDKVLLDPARAGAA 296 (358)
T ss_dssp TTCCSEEEECCCTTCCH
T ss_pred hccCceEEeCCCCccHH
Confidence 25689999999998854
|
| >d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: RmsB N-terminal domain-like domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=7.8e-14 Score=118.56 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHc-cChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccc----hHHH
Q 013515 33 FARREAAKVLRLVLR-GDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKR----QEEL 107 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~-~~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~----~~~l 107 (441)
++|..|+++|++|.. |.+..+++.... ...+++|++|+++|||||+|++..||++|.+ +++++++. .+.+
T Consensus 2 ~~R~~A~q~L~~v~~~g~~l~~~l~~~~---~~l~~~dr~~~~~lv~gvlr~~~~ld~~i~~--~l~~~~~~~~~~~~~i 76 (140)
T d1sqga1 2 NLRSMAAQAVEQVVEQGQSLSNILPPLQ---QKVSDKDKALLQELCFGVLRTLSQLDWLINK--LMARPMTGKQRTVHYL 76 (140)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHH---TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSSCCCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhhcccchhhHHHHHH
Confidence 589999999999976 555565554432 2455789999999999999999999999997 56765543 3779
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHcccccHHHHHHhhC
Q 013515 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRNKVKSIEDLMALYQ 162 (441)
Q Consensus 108 L~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~~~~~~e~~~~~~~ 162 (441)
|++++||++|.+ +|.++.++++|+.+|.. -..+|.|.+++......+++.+...
T Consensus 77 Lr~a~~el~~~~-~p~~avvneaV~lak~~~~~~~~~fVNaVLr~~~r~~~~~~~~~~ 133 (140)
T d1sqga1 77 IMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFN 133 (140)
T ss_dssp HHHHHHHHHHCC-SCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCCccchHHHHHHHHHhCCCcccchhHHHHHHHHhCcHHHHHhhc
Confidence 999999999975 99999999999988642 1256777777777667777776554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=6.9e-14 Score=131.15 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=75.4
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK 307 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~ 307 (441)
....++.. .++|++|||+|||+|++++++|.. +.++|+|+|+++.+++.+++|++.+|+.+ |+++++|+.++...
T Consensus 97 er~ri~~~--~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~ 172 (260)
T d2frna1 97 ERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE 172 (260)
T ss_dssp HHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC
T ss_pred HHHHHHhh--cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC
Confidence 33444444 368999999999999999999976 34699999999999999999999999954 99999999987654
Q ss_pred CCCCCCccEEEEcCCCCC
Q 013515 308 DPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg 325 (441)
..||.|++|||+++
T Consensus 173 ----~~~D~Ii~~~p~~~ 186 (260)
T d2frna1 173 ----NIADRILMGYVVRT 186 (260)
T ss_dssp ----SCEEEEEECCCSSG
T ss_pred ----CCCCEEEECCCCch
Confidence 67999999999754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=3.2e-13 Score=124.32 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=94.1
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
+-.+++..++++||++|||+|||+|..+..+++.. ++|+|+|+|+.+++.+++++...|++++.++++|+.+++..+
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence 44578889999999999999999999999998863 689999999999999999999999999999999999987654
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
++||.|++ .+++-.-+| + ..+|+++.++++ ||.++.+.
T Consensus 81 ---~~fD~v~~------~~~l~~~~d----------------~----------~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 81 ---DSFDIITC------RYAAHHFSD----------------V----------RKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ---TCEEEEEE------ESCGGGCSC----------------H----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cccceeee------eceeecccC----------------H----------HHHHHHHHHeeCCCcEEEEEE
Confidence 78999985 223321111 1 367888888887 67777753
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=2.7e-13 Score=123.41 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
...+.+.+++++|++|||+|||+|..|..+|+++++.++|+++|+++++++.++++++..++.|+.++++|+.+..+..
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~- 142 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF- 142 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG-
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc-
Confidence 3445678899999999999999999999999999888999999999999999999999999999999999988766543
Q ss_pred CCCCccEEEEcCC
Q 013515 310 AYSEVRAILLDPS 322 (441)
Q Consensus 310 ~~~~fD~Il~DpP 322 (441)
++||+|+++..
T Consensus 143 --~~fD~I~~~~~ 153 (213)
T d1dl5a1 143 --SPYDVIFVTVG 153 (213)
T ss_dssp --CCEEEEEECSB
T ss_pred --cchhhhhhhcc
Confidence 67999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=3.1e-13 Score=121.03 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=79.0
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNL 304 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~--~v~~~~~D~~~~ 304 (441)
|.++.+++..+.+.++++|||+|||+|..+..++.. ..+|+++|+|+.+++.+++|++.+++. ++++..+|..+.
T Consensus 38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~ 114 (194)
T d1dusa_ 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence 678899999999999999999999999999998875 258999999999999999999999885 489999998763
Q ss_pred CCCCCCCCCccEEEEcCCC
Q 013515 305 DPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPC 323 (441)
.. + ++||.|++|||.
T Consensus 115 ~~-~---~~fD~Ii~~~p~ 129 (194)
T d1dusa_ 115 VK-D---RKYNKIITNPPI 129 (194)
T ss_dssp CT-T---SCEEEEEECCCS
T ss_pred hc-c---CCceEEEEcccE
Confidence 32 2 689999999995
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=8.2e-13 Score=124.27 Aligned_cols=157 Identities=10% Similarity=0.094 Sum_probs=106.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+.+|||+|||+|..++.++.... ..+|+|+|+|+.+++.+++|++++|++||.++++|..+.... .+||.|++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~----~~fDlIvs 181 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG----QQFAMIVS 181 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT----CCEEEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC----CceeEEEe
Confidence 4467899999999999999998864 579999999999999999999999998999999998764332 58999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~ 398 (441)
+||+-....+...++... +... .-...- ..-...-++++..+.++++ +|.++.. + ...+...|.+++.
T Consensus 182 NPPYi~~~~~~~~~~v~~--~eP~--~AL~~g---~dGl~~~~~i~~~a~~~L~~~G~l~lE-i---g~~q~~~v~~~l~ 250 (274)
T d2b3ta1 182 NPPYIDEQDPHLQQGDVR--FEPL--TALVAA---DSGMADIVHIIEQSRNALVSGGFLLLE-H---GWQQGEAVRQAFI 250 (274)
T ss_dssp CCCCBCTTCHHHHSSGGG--SSCS--TTTBCH---HHHTHHHHHHHHHHGGGEEEEEEEEEE-C---CSSCHHHHHHHHH
T ss_pred cchhhhhhhhcccccccc--cchh--hhcccc---cccchHHHHHHHHHHHhcCCCCEEEEE-E---CchHHHHHHHHHH
Confidence 999976543211111100 0000 000011 1223455688999988887 6777764 2 2344566777774
Q ss_pred hhcCCCeEEecCCCCCC
Q 013515 399 IAMSFGFQLATPFPNGT 415 (441)
Q Consensus 399 ~~~~~~~~~~~~~~~~~ 415 (441)
. .+|..++...++.
T Consensus 251 ~---~gf~~i~~~kDl~ 264 (274)
T d2b3ta1 251 L---AGYHDVETCRDYG 264 (274)
T ss_dssp H---TTCTTCCEEECTT
T ss_pred H---CCCCeEEEEECCC
Confidence 3 3554444444443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=1.7e-12 Score=116.89 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=68.9
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
...+.-.|.+|||+|||+|..++.++.. +..+|+|+|+++.+++.+++|++.++. ++.++.+|+..+. ++|
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~------~~f 110 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------SRV 110 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------CCC
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC------CcC
Confidence 3444456899999999999999887654 446999999999999999999999987 5788999987753 579
Q ss_pred cEEEEcCCCCC
Q 013515 315 RAILLDPSCSG 325 (441)
Q Consensus 315 D~Il~DpPCSg 325 (441)
|.|++||||..
T Consensus 111 D~Vi~nPP~~~ 121 (201)
T d1wy7a1 111 DIVIMNPPFGS 121 (201)
T ss_dssp SEEEECCCCSS
T ss_pred cEEEEcCcccc
Confidence 99999999853
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=5.8e-12 Score=116.55 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=92.9
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNL 304 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~ 304 (441)
++.....++..+.+.||++|||+|||+|+.+..+++.. + .+|+++|+|+.+++.++++.+..|+. +|++.++|+.++
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-G-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-C-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-C-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 45566678889999999999999999999999998764 2 69999999999999999999999984 599999999987
Q ss_pred CCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
... ++||.|++ . +++-.-+|. ..+|..+.+.++ ||+++.+
T Consensus 96 ~~~----~~fD~v~~----~--~~~~~~~d~--------------------------~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 96 VAN----EKCDVAAC----V--GATWIAGGF--------------------------AGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp CCS----SCEEEEEE----E--SCGGGTSSS--------------------------HHHHHHHTTSEEEEEEEEEE
T ss_pred ccc----CceeEEEE----E--ehhhccCCH--------------------------HHHHHHHHHHcCcCcEEEEE
Confidence 432 68999984 2 222111111 367888889888 6877765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.33 E-value=2.7e-12 Score=117.18 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=71.9
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
-+...+.++++++|||+|||+|..+.++++.. .+|+|+|+|+.+++.++++++..|.+++.++++|+.+++..+
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~--- 79 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD--- 79 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT---
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccccccccc---
Confidence 34567888999999999999999999998762 589999999999999999999999999999999999987554
Q ss_pred CCccEEEE
Q 013515 312 SEVRAILL 319 (441)
Q Consensus 312 ~~fD~Il~ 319 (441)
++||.|++
T Consensus 80 ~~fD~v~~ 87 (231)
T d1vl5a_ 80 ERFHIVTC 87 (231)
T ss_dssp TCEEEEEE
T ss_pred cccccccc
Confidence 78999984
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.29 E-value=6.4e-12 Score=118.78 Aligned_cols=113 Identities=16% Similarity=0.083 Sum_probs=88.4
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
...+.+|.+|||+|||+|+.+..+++..+ .+|+|+|+++.+++.++++....|+ ++++++++|+.+++..+ ++|
T Consensus 62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~---~sf 136 (282)
T d2o57a1 62 TGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED---NSY 136 (282)
T ss_dssp TTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT---TCE
T ss_pred hcCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccccccccccccccccccccc---ccc
Confidence 34678999999999999999999998752 5899999999999999999999998 47999999999987554 789
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
|+|++ .+++-.-|| + ..+|..+.+.|+ ||.+++++....
T Consensus 137 D~V~~------~~~l~h~~d----------------~----------~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 137 DFIWS------QDAFLHSPD----------------K----------LKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp EEEEE------ESCGGGCSC----------------H----------HHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred chhhc------cchhhhccC----------------H----------HHHHHHHHHhcCCCcEEEEEEeecC
Confidence 99974 223321111 1 256788888777 788777655433
|
| >d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.7e-11 Score=103.61 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcc-ChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccc----hHHHH
Q 013515 34 ARREAAKVLRLVLRG-DARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKR----QEELV 108 (441)
Q Consensus 34 ~R~~A~~vL~~v~~~-~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~----~~~lL 108 (441)
+|..|+++|++++.+ ....+++..+.. ....+..|+.|+.+|++|+++++..||.+|.+ +++++++. ++.+|
T Consensus 9 aR~~a~q~Ly~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~gv~~~~~~id~~I~~--~l~~~~~r~~~~~~~IL 85 (139)
T d1ey1a_ 9 ARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGLMKP--YLSRLLEELGQVEKAVL 85 (139)
T ss_dssp HHHHHHHHHHHHHHHCCCSHHHHHHHHH-TTTSSSCCCHHHHHHHHHHHHHHHHHHHHHTT--CCCSCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHhHHHHHHHHHH--HHHhhHHhcChHHHHHH
Confidence 899999999999764 434444433221 12345679999999999999999999999997 56654332 47899
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhhH
Q 013515 109 YILTYDILFGQEISLVGDAEKFLMLHKG 136 (441)
Q Consensus 109 ~l~~yql~f~~~ip~~~~i~~~v~~~k~ 136 (441)
++|+||++|.+.+|.++.|+|+|+.+|.
T Consensus 86 r~a~~El~~~~~~p~~viInE~Velak~ 113 (139)
T d1ey1a_ 86 RIALYELSKRSDVPYKVAINEAIELAKS 113 (139)
T ss_dssp HHHHHHHHSCSSCCSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCCCceehHHHHHHHHHH
Confidence 9999999999889999999999999864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.24 E-value=1.4e-11 Score=113.00 Aligned_cols=82 Identities=24% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.++||++|||+|||+|..+.++|+.. +.+.|+|+|+++.+++.++++++.. .|+.++.+|.............+|.+
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeEEe
Confidence 47899999999999999999999974 5689999999999999999987654 57888899988766433222345566
Q ss_pred EEcCC
Q 013515 318 LLDPS 322 (441)
Q Consensus 318 l~DpP 322 (441)
+.|..
T Consensus 148 ~~~~~ 152 (230)
T d1g8sa_ 148 YEDVA 152 (230)
T ss_dssp EECCC
T ss_pred ecccc
Confidence 55544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.2e-11 Score=111.34 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=82.3
Q ss_pred CcccccchhhHHHHHHh--CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-----Cc
Q 013515 221 GCVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-----AN 293 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-----~~ 293 (441)
|.++.|-.-...+.++| +++||++|||+|||+|..|..||.++++.++|+++|+++++++.+++++++.++ .+
T Consensus 54 ~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~ 133 (224)
T d1i1na_ 54 QATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR 133 (224)
T ss_dssp TEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred hhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence 44555544444555666 678999999999999999999999998889999999999999999999998664 57
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 294 IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 294 v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+.+..+|+....+.. ..||+|+++..+
T Consensus 134 ~~~~~gD~~~~~~~~---~~fD~I~~~~~~ 160 (224)
T d1i1na_ 134 VQLVVGDGRMGYAEE---APYDAIHVGAAA 160 (224)
T ss_dssp EEEEESCGGGCCGGG---CCEEEEEECSBB
T ss_pred eEEEEeecccccchh---hhhhhhhhhcch
Confidence 899999998766543 689999987653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.23 E-value=2.8e-11 Score=108.09 Aligned_cols=117 Identities=15% Similarity=0.271 Sum_probs=83.0
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
.+..++--.|.+|||+|||+|..++.++.+ +..+|+++|+++.+++.+++|+ .++.++++|+.+++ +
T Consensus 40 ~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~------~ 106 (197)
T d1ne2a_ 40 EIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEIS------G 106 (197)
T ss_dssp HHHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCC------C
T ss_pred HHHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhcC------C
Confidence 344555557999999999999988766654 3468999999999999999885 35789999998764 6
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~v 392 (441)
+||.|++|||. |+..++.| +.+|+.++. .+.+||+- +.......
T Consensus 107 ~fD~Vi~NPPf---g~~~~~~D---------------------------~~fl~~a~~---~~~~iy~i---h~~~~~~~ 150 (197)
T d1ne2a_ 107 KYDTWIMNPPF---GSVVKHSD---------------------------RAFIDKAFE---TSMWIYSI---GNAKARDF 150 (197)
T ss_dssp CEEEEEECCCC----------C---------------------------HHHHHHHHH---HEEEEEEE---EEGGGHHH
T ss_pred cceEEEeCccc---chhhhhch---------------------------HHHHHHHHh---cCCeEEEe---hhhhHHHH
Confidence 79999999995 44333222 244666643 36788964 45666777
Q ss_pred HHHHhc
Q 013515 393 IKSVLP 398 (441)
Q Consensus 393 V~~~l~ 398 (441)
+.....
T Consensus 151 i~~~~~ 156 (197)
T d1ne2a_ 151 LRREFS 156 (197)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776664
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.22 E-value=4.1e-12 Score=109.24 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.|.+|||+|||+|..++.++.+ +..+|+++|.++.+++.+++|++.+|+. +++++++|+....... ..+||.|++
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~--~~~fDiIf~ 89 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL--TGRFDLVFL 89 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--CSCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc--ccccceeEe
Confidence 5899999999999999987664 4579999999999999999999999984 5999999987754322 268999999
Q ss_pred cCCC
Q 013515 320 DPSC 323 (441)
Q Consensus 320 DpPC 323 (441)
|||.
T Consensus 90 DPPy 93 (152)
T d2esra1 90 DPPY 93 (152)
T ss_dssp CCSS
T ss_pred chhh
Confidence 9995
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.22 E-value=2.1e-11 Score=110.52 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=84.8
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
.|.++.|-.-...+.++|++++|++|||+|||+|+.|..||.+++ ++|+++|++++.++.++++++++|++|+.++++
T Consensus 57 ~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g 134 (215)
T d1jg1a_ 57 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG 134 (215)
T ss_dssp TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC
Confidence 455666655556667889999999999999999999999999874 679999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCC
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|.....+.. ..||+|++.+.+
T Consensus 135 d~~~g~~~~---~pfD~Iiv~~a~ 155 (215)
T d1jg1a_ 135 DGSKGFPPK---APYDVIIVTAGA 155 (215)
T ss_dssp CGGGCCGGG---CCEEEEEECSBB
T ss_pred ccccCCccc---CcceeEEeeccc
Confidence 998765443 789999986553
|
| >d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=6.2e-11 Score=100.32 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHccCh-hhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccc-ccc----chH
Q 013515 33 FARREAAKVLRLVLRGDA-RRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK----RQE 105 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~-~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~-~~~----~~~ 105 (441)
.+|..|+++|+++..++. ..+ ....+.. ...+..|++|+++||+||++++..||++|.+ ++.. +.. ..+
T Consensus 7 ~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~lv~g~~~~~~~id~~I~~--~~~~~~~~rl~~~~~ 82 (141)
T d1tzva_ 7 RMRLAVFKALFQHEFRRDEDLEQILEEILD--ETYDKKAKEDARRYIRGIKENLSMIDDLISR--YLEKWSLNRLSVVDR 82 (141)
T ss_dssp HHHHHHHHHHHHHTTCTTSCHHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCSSSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHH--hccchhHHHHHHHHHHHHHHhHHHHHHHHHH--hcccCChHHHHHHHH
Confidence 589999999999975432 222 2222211 2345678999999999999999999999997 4432 222 237
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 106 ELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 106 ~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
.+|++|+||++|..++|.++.|+++|+.+|.- -..+|.|.+++.
T Consensus 83 ~iLr~a~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~ 129 (141)
T d1tzva_ 83 NVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDR 129 (141)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence 79999999999988899999999999998752 224566666654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1e-11 Score=110.00 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.|.+|||+|||+|..++.++.+ +..+|+++|.++..++.+++|++.++..++.++.+|+..+.... ..+||.|++|
T Consensus 43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~--~~~fDlIf~D 118 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK--GTPHNIVFVD 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--CCCEEEEEEC
T ss_pred chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccc--ccccCEEEEc
Confidence 4789999999999999987765 45799999999999999999999999999999999988765433 2689999999
Q ss_pred CCCC
Q 013515 321 PSCS 324 (441)
Q Consensus 321 pPCS 324 (441)
||+.
T Consensus 119 PPY~ 122 (183)
T d2fpoa1 119 PPFR 122 (183)
T ss_dssp CSSS
T ss_pred Cccc
Confidence 9963
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.15 E-value=1.2e-10 Score=104.03 Aligned_cols=106 Identities=15% Similarity=0.040 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.+.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++++.+..|++++.+...|+...... ++||.|++.
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~fD~I~~~ 102 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD----GEYDFILST 102 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC----CCEEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc----ccccEEEEe
Confidence 3459999999999999999986 258999999999999999999999999999999999887754 679999964
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
...- .+ |+ . ....+|+.+.+.++ +|+++.++..
T Consensus 103 ~~~~---~~---~~-----------------~-------~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 103 VVMM---FL---EA-----------------Q-------TIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp SCGG---GS---CT-----------------T-------HHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eeee---cC---CH-----------------H-------HHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4321 11 10 0 11467888888877 6877776554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=4.5e-11 Score=111.16 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=67.4
Q ss_pred hhHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 229 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 229 ss~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
...++...+. .++|++|||+|||+|..+..++.+ + .+|+|+|+|+.+++.+++|++++|+. ++++++|.....+
T Consensus 106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~~~ 181 (254)
T d2nxca1 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP 181 (254)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG
T ss_pred hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCCc-eeEEecccccccc
Confidence 3455555554 578999999999999999877764 2 58999999999999999999999985 5688888765432
Q ss_pred CCCCCCCccEEEEc
Q 013515 307 KDPAYSEVRAILLD 320 (441)
Q Consensus 307 ~~~~~~~fD~Il~D 320 (441)
.++||.|+++
T Consensus 182 ----~~~fD~V~an 191 (254)
T d2nxca1 182 ----FGPFDLLVAN 191 (254)
T ss_dssp ----GCCEEEEEEE
T ss_pred ----ccccchhhhc
Confidence 2689999975
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.14 E-value=4.4e-11 Score=110.41 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.+++++...|. +++++++|+.++... ++||.|++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~----~~fD~i~~- 107 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN----RKFDLITC- 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS----CCEEEEEE-
T ss_pred CCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc-cceeeccchhhhccc----ccccccce-
Confidence 4679999999999999999886 25899999999999999999998887 689999999987643 67999984
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.++..+.+. +.++ ...+|..+.+.|+ ||.++...
T Consensus 108 -~~~~~~~~~-------------------~~~~-------~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 108 -CLDSTNYII-------------------DSDD-------LKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp -CTTGGGGCC-------------------SHHH-------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred -eeeeeeccC-------------------CHHH-------HHHHHHHHHHhCCCCeEEEEEe
Confidence 122223221 1222 2467899999888 68888754
|
| >d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=2.3e-10 Score=95.54 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHccCh-hhHHHHhhhhhh--cCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccc-cccc----h
Q 013515 33 FARREAAKVLRLVLRGDA-RRRAVGSIKSLV--YSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWKR----Q 104 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~-~~~~~~~~~~~~--~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~-~~~~----~ 104 (441)
.+|..|+++|++++.++. ..+.+....... .....+++.|+.+|++|+++++..||.+|.+ +++. +.+. +
T Consensus 4 ~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gv~~~~~~id~~I~~--~l~~~~~~~l~~i~ 81 (131)
T d1eyva_ 4 QARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITA--HLRGWTLDRLPAVD 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHT--TSTTCCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH--hhhhhHHHHhhHHH
Confidence 489999999999977443 333333221111 2233567899999999999999999999997 5543 2222 3
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHHH---HHHHHHHHHH
Q 013515 105 EELVYILTYDILFGQEISLVGDAEKFLMLHKGAI---QLALAQLLVR 148 (441)
Q Consensus 105 ~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~ 148 (441)
+.+||+|+||++|...+|.++.++++|+.+|... ...|.|.+++
T Consensus 82 ~~iLr~a~~El~~~~~~p~~viInE~V~lak~~~~~~~~kfiNaVL~ 128 (131)
T d1eyva_ 82 RAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLG 128 (131)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhHHHHHHHHHHHhCCCcccchhHHHHH
Confidence 7899999999999888999999999999987532 2455555544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.12 E-value=1.6e-10 Score=105.24 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=86.9
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
.+.++...+ +++.+|||+|||+|..+..+++... +..+|+|+|+|+.|++.++++++..+. .++.+..+|+.+++.
T Consensus 29 i~~~~~~~~--~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~ 106 (225)
T d1im8a_ 29 IGMLAERFV--TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI 106 (225)
T ss_dssp HHHHHHHHC--CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC
T ss_pred HHHHHHHhc--CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc
Confidence 344444444 5789999999999999999998753 457999999999999999999998775 468888888877653
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
..+|.|++ ++....+ ..+| ..++|+.+.+.|+ ||.++.++-+..
T Consensus 107 -----~~~d~i~~---~~~l~~~-~~~d--------------------------~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 107 -----KNASMVIL---NFTLQFL-PPED--------------------------RIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp -----CSEEEEEE---ESCGGGS-CGGG--------------------------HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -----ccceeeEE---eeecccc-Chhh--------------------------HHHHHHHHHHhCCCCceeeccccccc
Confidence 46788874 2222221 1001 1368888988887 688887755443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.12 E-value=1.2e-10 Score=107.30 Aligned_cols=110 Identities=24% Similarity=0.211 Sum_probs=84.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..+++. ...|+|+|+|+.|++.+++++...+. ++.+.++|+.+++.. ++||.|
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~----~~fD~I 109 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK----NEFDAV 109 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC----SCEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc-cchheehhhhhcccc----cccchH
Confidence 5567789999999999999999885 25899999999999999999999887 689999999998754 579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
++ ++. ++. +. +.+ -..+.|.++.+.|+ ||.++.+..+.
T Consensus 110 ~~----~~~-~~~-~~----------------~~~-------~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 110 TM----FFS-TIM-YF----------------DEE-------DLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp EE----CSS-GGG-GS----------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred hh----hhh-hhh-cC----------------ChH-------HHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 85 322 111 10 111 12467888888877 78888776553
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=1e-10 Score=105.69 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=64.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.++++|||+|||+|..+.++++. ..+|+|+|+|+.+++.+++++...+. ++..+++|+.+++..+ ++||+|+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~---~~fD~I~ 107 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFED---KTFDYVI 107 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCT---TCEEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc-cccccccccccccccC---cCceEEE
Confidence 357889999999999999999875 36899999999999999999998885 5678899999987665 7899998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 108 ~ 108 (226)
T d1ve3a1 108 F 108 (226)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=1.3e-10 Score=106.00 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=80.5
Q ss_pred cCcccccchhhHHHHHHh--CCCCCCEEEEEcCCCchHHHHHHHHhcCC-----cEEEEEeCCHHHHHHHHHHHHHh---
Q 013515 220 NGCVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLS--- 289 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~~-----~~V~a~D~~~~rl~~l~~~~~~~--- 289 (441)
.|..+.|-.-...+.++| ++++|++|||+|||+|+.|..++.+++.. ++|+++|++++.++.+++|+...
T Consensus 57 ~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~ 136 (223)
T d1r18a_ 57 GGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 136 (223)
T ss_dssp TTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence 345555544344555666 78899999999999999999999997543 48999999999999999987653
Q ss_pred --CCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 290 --GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 290 --g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
++.||.++++|+....+.. ..||+|+++..+
T Consensus 137 ~~~~~nv~~~~~d~~~~~~~~---~~fD~Iiv~~a~ 169 (223)
T d1r18a_ 137 MLDSGQLLIVEGDGRKGYPPN---APYNAIHVGAAA 169 (223)
T ss_dssp HHHHTSEEEEESCGGGCCGGG---CSEEEEEECSCB
T ss_pred hcCccEEEEEecccccccccc---cceeeEEEEeec
Confidence 5679999999998765443 689999997764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.08 E-value=8.2e-11 Score=105.83 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
++..|||+|||+|..+.++|... +...++|+|+++.++..+.+++++.|++||.++++|+..+....+ .+++|.|++.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~-~~~~d~v~i~ 106 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE-PGEVKRVYLN 106 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-TTSCCEEEEE
T ss_pred CCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC-chhhhccccc
Confidence 45689999999999999999984 568999999999999999999999999999999999987652111 2678988876
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
=|..-.- .. |. ..+ -.|..+|....+.|+ ||.|...|
T Consensus 107 fp~P~~k----~~------h~---------k~R-----l~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 107 FSDPWPK----KR------HE---------KRR-----LTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp SCCCCCS----GG------GG---------GGS-----TTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccch----hh------hc---------chh-----hhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6632110 00 00 000 133567777777666 78877765
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.08 E-value=1.9e-10 Score=103.45 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.+..|||+|||.|..+..+|... +...++|+|+++.++..+.+++.+.|++||.++++|+..+....+ ..++|.|++.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~-~~~~~~i~i~ 108 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE-DGEIDRLYLN 108 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC-TTCCSEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhcc-CCceehhccc
Confidence 35689999999999999999985 457999999999999999999999999999999999988763322 2678988876
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
-|. . |++. +-.+---.|..+|....+.|+ ||.|..+|
T Consensus 109 fPd-----------P-w~K~------------~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 109 FSD-----------P-WPKK------------RHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp SCC-----------C-CCSG------------GGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccc-----------c-ccch------------hhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 552 1 1110 000000134677888777676 78887665
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.08 E-value=2.3e-10 Score=104.20 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=76.3
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|....+-.-...+.+.|++++|++|||+|||+|+.|..||.+. ++|+++|+++..++.+++++.. ..|+.++++|
T Consensus 50 g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d 124 (224)
T d1vbfa_ 50 GINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--YNNIKLILGD 124 (224)
T ss_dssp TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESC
T ss_pred CCceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--ccccccccCc
Confidence 4444444444456778999999999999999999999999874 6899999999999999998764 4699999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpP 322 (441)
.....+.. ++||+|++++.
T Consensus 125 ~~~g~~~~---~pfD~Iiv~~a 143 (224)
T d1vbfa_ 125 GTLGYEEE---KPYDRVVVWAT 143 (224)
T ss_dssp GGGCCGGG---CCEEEEEESSB
T ss_pred hhhcchhh---hhHHHHHhhcc
Confidence 87654432 67999998654
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.06 E-value=4.7e-11 Score=105.57 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~-~~~~~fD~I 317 (441)
..|.+|||+|||+|..++.++.. ++.+|+++|.++..++.+++|++.++.. +++++++|+..+.... ....+||.|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 46999999999999999988775 4679999999999999999999999984 7999999987643210 112579999
Q ss_pred EEcCCC
Q 013515 318 LLDPSC 323 (441)
Q Consensus 318 l~DpPC 323 (441)
++|||.
T Consensus 118 flDPPY 123 (182)
T d2fhpa1 118 LLDPPY 123 (182)
T ss_dssp EECCCG
T ss_pred Eechhh
Confidence 999995
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.05 E-value=2.1e-10 Score=101.32 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~--~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.|.+|||+|||+|..++..+.+ ++..|+.+|.+...++.+++|++.+++. ...+...|+...........+||.|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence 5789999999999999998875 5679999999999999999999999874 46777777655443222235799999
Q ss_pred EcCCCC
Q 013515 319 LDPSCS 324 (441)
Q Consensus 319 ~DpPCS 324 (441)
+|||..
T Consensus 121 lDPPY~ 126 (183)
T d2ifta1 121 LDPPFH 126 (183)
T ss_dssp ECCCSS
T ss_pred echhHh
Confidence 999974
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=5.4e-11 Score=104.09 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~fD~I 317 (441)
...|.+|||+|||+|..++.++.. + .+|+++|.++.+++.+++|++.+|+.+ ++...|...+.. ......+||.|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--g-a~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--G-WEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--T-CEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--c-chhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccCCcccee
Confidence 356889999999999999877664 3 589999999999999999999999853 344444432110 00112679999
Q ss_pred EEcCCC
Q 013515 318 LLDPSC 323 (441)
Q Consensus 318 l~DpPC 323 (441)
++|||+
T Consensus 115 f~DPPY 120 (171)
T d1ws6a1 115 FMAPPY 120 (171)
T ss_dssp EECCCT
T ss_pred EEcccc
Confidence 999996
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.01 E-value=5.2e-10 Score=105.46 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=71.5
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
.++-.+..+..+.+|||+|||+|..+..++...+..++|+++|+++.+++.++++++..+. ++++.++|+.+++..
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~--- 92 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN--- 92 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS---
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccccc---
Confidence 3333444677788999999999999999998876668999999999999999999998886 789999999987643
Q ss_pred CCCccEEEEc
Q 013515 311 YSEVRAILLD 320 (441)
Q Consensus 311 ~~~fD~Il~D 320 (441)
++||.|++.
T Consensus 93 -~~fD~v~~~ 101 (281)
T d2gh1a1 93 -DKYDIAICH 101 (281)
T ss_dssp -SCEEEEEEE
T ss_pred -CCceEEEEe
Confidence 579999853
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=1e-09 Score=103.43 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=73.1
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
..|..--..++..++++||++|||+|||.|+.+.++++..+ .+|+++|+|++.++.+++++++.|+ .++.+...|..
T Consensus 35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 34554556677778899999999999999999999988753 5999999999999999999999998 45778888877
Q ss_pred CCCCCCCCCCCccEEEE
Q 013515 303 NLDPKDPAYSEVRAILL 319 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~ 319 (441)
.++ ++||.|++
T Consensus 113 ~~~------~~fD~i~s 123 (280)
T d2fk8a1 113 DFA------EPVDRIVS 123 (280)
T ss_dssp GCC------CCCSEEEE
T ss_pred hhc------cchhhhhH
Confidence 653 57899974
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=2.1e-09 Score=101.71 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=98.1
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~ 302 (441)
..|..--.+++..+++++|++|||+|||.|+.+.++|+..+ .+|+++++|++.++.+++.++..|+. .+.+...|..
T Consensus 44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~ 121 (291)
T d1kpia_ 44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE 121 (291)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence 34555566777889999999999999999999999998763 69999999999999999999999984 5777778865
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
..+ ++||+|+. .|++-+-+|..-. ...+-...+++.+.++|+ ||+++-.|
T Consensus 122 ~~~------~~fD~i~s------ie~~eH~~~~~~~-----------------~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 122 EFD------EPVDRIVS------LGAFEHFADGAGD-----------------AGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp GCC------CCCSEEEE------ESCGGGTTCCSSC-----------------CSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccc------cccceEee------chhHHhcchhhhh-----------------hHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 322 67999974 4444332221000 001123577888888887 78888877
Q ss_pred CCCCChh
Q 013515 382 CSIHQVE 388 (441)
Q Consensus 382 CS~~~~E 388 (441)
.++....
T Consensus 173 i~~~~~~ 179 (291)
T d1kpia_ 173 ITIPDKE 179 (291)
T ss_dssp EECCCHH
T ss_pred EeccCcc
Confidence 7765443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.00 E-value=9.6e-10 Score=103.75 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=93.9
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
..|+.-..+++..++++||++|||+|||.|+.+.++|+..+ .+|+++++|+..++.+++++++.|. +++++..+|..
T Consensus 45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (285)
T d1kpga_ 45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE 122 (285)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence 44555567788889999999999999999999999999863 6999999999999999999998887 67999999987
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.++ ++||.|+. .|++-.-.+ +-...+++.+.++|+ ||.++-.|
T Consensus 123 ~~~------~~fD~i~s------i~~~eh~~~------------------------~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 123 QFD------EPVDRIVS------IGAFEHFGH------------------------ERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp GCC------CCCSEEEE------ESCGGGTCT------------------------TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccc------ccccceee------ehhhhhcCc------------------------hhHHHHHHHHHhhcCCCCcEEEEE
Confidence 764 56898864 444421000 001357888888777 68776555
Q ss_pred CC
Q 013515 382 CS 383 (441)
Q Consensus 382 CS 383 (441)
.+
T Consensus 167 i~ 168 (285)
T d1kpga_ 167 IT 168 (285)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=8.2e-10 Score=100.76 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=94.3
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----------------CCcE
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------------AANI 294 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----------------~~~v 294 (441)
.+..++.+.+|.+|||+|||.|..+..||+. ..+|+|+|+|+.+++.++++....+ ..++
T Consensus 36 ~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 112 (229)
T d2bzga1 36 HLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI 112 (229)
T ss_dssp HHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred HHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence 3445677889999999999999999999986 3689999999999999988765321 1368
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG- 373 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~- 373 (441)
.++++|+..++.... +.||+|+. |.....+ .|+. ....+....++++
T Consensus 113 ~~~~~d~~~l~~~~~--~~fd~i~~---~~~l~~~--~~~~-------------------------r~~~~~~~~~~Lkp 160 (229)
T d2bzga1 113 SLYCCSIFDLPRTNI--GKFDMIWD---RGALVAI--NPGD-------------------------RKCYADTMFSLLGK 160 (229)
T ss_dssp EEEESCGGGGGGSCC--CCEEEEEE---SSSTTTS--CGGG-------------------------HHHHHHHHHHTEEE
T ss_pred EEEEcchhhcccccc--CceeEEEE---EEEEEec--cchh-------------------------hHHHHHHHHhhcCC
Confidence 899999988875542 67999975 3333332 1111 1345666677777
Q ss_pred CcEEEEEcCCCCChh--------cHHHHHHHh
Q 013515 374 VERVVYSTCSIHQVE--------NEDVIKSVL 397 (441)
Q Consensus 374 ~G~lvYsTCS~~~~E--------Ne~vV~~~l 397 (441)
||+++..+++..+.+ .++.+..++
T Consensus 161 gG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf 192 (229)
T d2bzga1 161 KFQYLLCVLSYDPTKHPGPPFYVPHAEIERLF 192 (229)
T ss_dssp EEEEEEEEEECCTTTCCCSSCCCCHHHHHHHH
T ss_pred cceEEEEEcccCCCCCCCCCCCCCHHHHHHHh
Confidence 788888888765543 455677777
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.00 E-value=8.1e-10 Score=99.75 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=103.1
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
+.+++.++.+.+|++|||.|||+|++...+.+.......++++|+++..+.. .....++++|.......
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~~~-- 76 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWEPG-- 76 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCCCS--
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhccccc--
Confidence 5677888899999999999999999999998887777889999999865432 23456788888765533
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHH-H-------HHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL-N-------KLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~-~-------~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
.+||.|+.|||+.........+... . ....+. . ....++...+.+++++++ +|++++.
T Consensus 77 --~~fd~ii~npP~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 77 --EAFDLILGNPPYGIVGEASKYPIHV----------F-KAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp --SCEEEEEECCCCCCBSCTTTCSBCC----------C-HHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --cccceecccCccccccccccccchh----------h-hhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 6799999999987655432221110 0 001111 1 112257788899999876 7877766
Q ss_pred c-CCCCChhcHHHHHHHhc
Q 013515 381 T-CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 381 T-CS~~~~ENe~vV~~~l~ 398 (441)
+ +|+...++...+.++|.
T Consensus 144 ~p~~~l~~~~~~~lR~~l~ 162 (223)
T d2ih2a1 144 VPATWLVLEDFALLREFLA 162 (223)
T ss_dssp EEGGGGTCGGGHHHHHHHH
T ss_pred EeeeeccCcchHHHHHHHH
Confidence 5 77777788888887774
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.9e-10 Score=104.47 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=66.1
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+...++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...|..++++.++|+.+++... ++||.
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~---~~fD~ 130 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP---DSYDV 130 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS---SCEEE
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccccccccccccccccccc---ccccc
Confidence 345678899999999999998876542 3589999999999999999999888888999999999987553 78999
Q ss_pred EEE
Q 013515 317 ILL 319 (441)
Q Consensus 317 Il~ 319 (441)
|++
T Consensus 131 I~~ 133 (222)
T d2ex4a1 131 IWI 133 (222)
T ss_dssp EEE
T ss_pred ccc
Confidence 985
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.97 E-value=6.6e-10 Score=106.99 Aligned_cols=148 Identities=9% Similarity=0.055 Sum_probs=103.2
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC----CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG----KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~----~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
++..++.++++.+|||.|||+|++...+...+.. ...++|+|+++.+++.++.++...+.. ..+.++|.......
T Consensus 108 l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~~ 186 (328)
T d2f8la1 108 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-MTLLHQDGLANLLV 186 (328)
T ss_dssp HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCTTSCCCC
T ss_pred HHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-hhhhcccccccccc
Confidence 4455667888999999999999999988776543 247999999999999999999988864 45677777654432
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE-EcCCCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY-STCSIH 385 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY-sTCS~~ 385 (441)
.+||+|+.+||++......+...... .. .. .....+...+.+++++++ +|++++ .++|+.
T Consensus 187 ----~~fD~vi~NPPy~~~~~~~~~~~~~~--~~----~~--------~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l 248 (328)
T d2f8la1 187 ----DPVDVVISDLPVGYYPDDENAKTFEL--CR----EE--------GHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF 248 (328)
T ss_dssp ----CCEEEEEEECCCSEESCHHHHTTSTT--CC----SS--------SCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG
T ss_pred ----ccccccccCCCCCCCccchhhhhcch--hc----cc--------CcchHHHHHHHHHHHhcCCCCceEEEecCccc
Confidence 68999999999865432211111100 00 00 011234568899999887 675544 567777
Q ss_pred ChhcHHHHHHHhc
Q 013515 386 QVENEDVIKSVLP 398 (441)
Q Consensus 386 ~~ENe~vV~~~l~ 398 (441)
...++..+.+.|-
T Consensus 249 ~~~~~~~lR~~L~ 261 (328)
T d2f8la1 249 GTSDFAKVDKFIK 261 (328)
T ss_dssp GSTTHHHHHHHHH
T ss_pred cCchhHHHHHHHH
Confidence 7788888887773
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.97 E-value=1.6e-09 Score=100.15 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=81.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+|.+|||+|||+|+.+..++.. +.+.|+|+|+|+.+++.++++.+..+. .++.+.++|+...+.... ++||+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~--~~fD~V 97 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG--KEFDVI 97 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS--SCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccc--ccceEE
Confidence 357899999999999999988875 346899999999999999999988776 479999999976654322 679999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
++ . +++-.-+ .+.+ ....++..+.+.|+ ||.++-++
T Consensus 98 ~~----~--~~l~~~~---------------~~~~-------~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 98 SS----Q--FSFHYAF---------------STSE-------SLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp EE----E--SCGGGGG---------------SSHH-------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EE----c--ceeeecC---------------CCHH-------HHHHHHHHHhceeCCCCEEEEEe
Confidence 74 2 2221100 0122 22567888888887 67766543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=3.8e-10 Score=99.42 Aligned_cols=140 Identities=24% Similarity=0.296 Sum_probs=101.4
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PAY 311 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~~~ 311 (441)
..+|.+++|+.++|+++|.||+|..+.+. .++|+|+|.++.+++.+++. -.+++.++++++.++.... ...
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHcCC
Confidence 46788999999999999999999988764 58999999999999887653 3468999999988765221 113
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
+.+|.||+|-.+|..+.= +|+ .++.. +...|..+..+++ +|.++..|. |..|+
T Consensus 84 ~~vdgIl~DLGvSs~qld--~~~--------------------re~~~-~~~~L~~~~~~lk~gg~~~ii~f--hs~Ed- 137 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLD--DPS--------------------DELNA-LKEFLEQAAEVLAPGGRLVVIAF--HSLED- 137 (182)
T ss_dssp SCEEEEEEECSCCHHHHH--CGG--------------------THHHH-HHHHHHHHHHHEEEEEEEEEEEC--SHHHH-
T ss_pred CccCEEEEEccCCHHHhh--cch--------------------HHHHH-HHHHHHHHHhhhCCCCeEEEEec--ccchh-
Confidence 679999999988876531 111 12333 4458999988877 688887764 55554
Q ss_pred HHHHHHhchhcCCCeEEec
Q 013515 391 DVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~~~ 409 (441)
..|.++++. ..++...
T Consensus 138 ~ivk~~~~e---~~~k~i~ 153 (182)
T d1wg8a2 138 RVVKRFLRE---SGLKVLT 153 (182)
T ss_dssp HHHHHHHHH---HCSEESC
T ss_pred HHHHHHHhh---ccceecc
Confidence 567777753 3455543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.7e-10 Score=105.50 Aligned_cols=111 Identities=17% Similarity=0.110 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+|++|||+|||+|..+..+++.. ..+|+++|+|+.+++.++++.+..+. ++.++.+|+.......+ .++||.|+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~fD~i~f 127 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLP-DGHFDGILY 127 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSC-TTCEEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccc-cccccceee
Confidence 578999999999999999998752 36899999999999999999887664 57778887765443221 268999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
|+..+..+.. +. ..+...++.+.++|+ ||.++|.+
T Consensus 128 D~~~~~~~~~-~~--------------------------~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 128 DTYPLSEETW-HT--------------------------HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCCCCBGGGT-TT--------------------------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccc-cc--------------------------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 9986544322 10 112457777888777 78888754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.93 E-value=2.8e-10 Score=100.31 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=63.9
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEeccCC
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA------------ANIEVLHGDFL 302 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~------------~~v~~~~~D~~ 302 (441)
..|.+.||.+|||+|||+|..+.+||+. +..|+|+|+|+.+++.++++++..+. .++.+..+|+.
T Consensus 14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 90 (201)
T d1pjza_ 14 SSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 90 (201)
T ss_dssp HHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred HHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence 3467889999999999999999999986 37999999999999999998865432 23467788887
Q ss_pred CCCCCCCCCCCccEEEE
Q 013515 303 NLDPKDPAYSEVRAILL 319 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~ 319 (441)
.++.... ..||.|+.
T Consensus 91 ~l~~~~~--~~~D~i~~ 105 (201)
T d1pjza_ 91 ALTARDI--GHCAAFYD 105 (201)
T ss_dssp SSTHHHH--HSEEEEEE
T ss_pred ccccccc--cceeEEEE
Confidence 7664431 57899974
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.89 E-value=8.3e-10 Score=107.93 Aligned_cols=126 Identities=21% Similarity=0.164 Sum_probs=93.0
Q ss_pred hcCccc--ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc---
Q 013515 219 VNGCVF--LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--- 293 (441)
Q Consensus 219 ~~g~~~--~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~--- 293 (441)
+.+.|| .|..+..+.+.++....+.+|||+.||+|..++.++.-.+ ...|+++|+++..++.+++|++.+|+.+
T Consensus 21 ~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~ 99 (375)
T d2dula1 21 DSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRE 99 (375)
T ss_dssp --CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEE
T ss_pred CCCcccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCcccccc
Confidence 344555 5666665544444434578999999999999998877654 4699999999999999999999998743
Q ss_pred ------------EEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHH
Q 013515 294 ------------IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQ 361 (441)
Q Consensus 294 ------------v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q 361 (441)
+.+.+.|+..+.... ...||+|-+||. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~Da~~~~~~~--~~~fDvIDiDPf--Gs~---------------------------------- 141 (375)
T d2dula1 100 SKGRAILKGEKTIVINHDDANRLMAER--HRYFHFIDLDPF--GSP---------------------------------- 141 (375)
T ss_dssp CSSEEEEESSSEEEEEESCHHHHHHHS--TTCEEEEEECCS--SCC----------------------------------
T ss_pred ccccccccccceeEeehhhhhhhhHhh--cCcCCcccCCCC--CCc----------------------------------
Confidence 556666765444322 257999999994 332
Q ss_pred HHHHHHHhCCCCCcEEEEEcCC
Q 013515 362 KKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 362 ~~lL~~a~~~~~~G~lvYsTCS 383 (441)
...|+.|++.++.|.+++.|||
T Consensus 142 ~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 142 MEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhccCCEEEEEec
Confidence 2568999988886778888988
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=3.8e-09 Score=98.72 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.++.+|||+|||+|..+..+++.. +...++++|+++.+++.++++ ..++.+.++|+.+++..+ ++||.|+
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~~---~sfD~v~ 152 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFSD---TSMDAII 152 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBCT---TCEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCCC---CCEEEEe
Confidence 4668899999999999999999885 347999999999999988764 257889999999988665 7899998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 153 ~ 153 (268)
T d1p91a_ 153 R 153 (268)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=9.5e-09 Score=95.83 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+..+|+|+|||+|..++.++.. +..+|+|+|+|+.+++.+++|++++|+. ++.+..+|..+..... .++||.|+.
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~--~~~fDlIVs 185 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK--FASIEMILS 185 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG--TTTCCEEEE
T ss_pred cccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc--cCcccEEEE
Confidence 3458999999999999998864 4579999999999999999999999985 4778888887654332 368999999
Q ss_pred cCCCCCCc
Q 013515 320 DPSCSGSG 327 (441)
Q Consensus 320 DpPCSg~G 327 (441)
+||+-...
T Consensus 186 NPPYI~~~ 193 (271)
T d1nv8a_ 186 NPPYVKSS 193 (271)
T ss_dssp CCCCBCGG
T ss_pred cccccCcc
Confidence 99986543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=2.6e-09 Score=96.57 Aligned_cols=96 Identities=17% Similarity=0.269 Sum_probs=76.8
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD 305 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~ 305 (441)
.....++..++......+|||+|+|+|..|+.|+..++..++|+++|+++.+++.++++++..|+ ++|+++.+|+.+..
T Consensus 42 ~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l 121 (214)
T d2cl5a1 42 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLI 121 (214)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccc
Confidence 34445555555544567999999999999999999887779999999999999999999999998 56999999988754
Q ss_pred CCC---CCCCCccEEEEcCC
Q 013515 306 PKD---PAYSEVRAILLDPS 322 (441)
Q Consensus 306 ~~~---~~~~~fD~Il~DpP 322 (441)
+.. .....||.|++|.-
T Consensus 122 ~~l~~~~~~~~~D~ifiD~~ 141 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLDHW 141 (214)
T ss_dssp GGHHHHSCCCCEEEEEECSC
T ss_pred cchhhcccccccceeeeccc
Confidence 321 01257999999943
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=9.8e-09 Score=96.87 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=84.7
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEeccCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA----NIEVLHGDFLNLD 305 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~----~v~~~~~D~~~~~ 305 (441)
..++...+...++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.++++....+.. ...+...|+....
T Consensus 45 ~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T d1xvaa_ 45 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 121 (292)
T ss_dssp HHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence 345666777778899999999999999999886 258999999999999999999877653 2334455554432
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
...+....||.|++ .+. ++..-|+.. ... ..+..+|+.+.+.|+ ||.++.++.
T Consensus 122 ~~~~~~~~fd~v~~----~~~-~~~~~~~~~------------~~~-------~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 122 KDVPAGDGFDAVIC----LGN-SFAHLPDSK------------GDQ-------SEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HHSCCTTCEEEEEE----CSS-CGGGSCCTT------------SSS-------HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCCCceEEEE----ecC-chhhcCCcc------------cCh-------HHHHHHHHHHHHHcCcCcEEEEeec
Confidence 11111267999985 221 121111110 001 124678999999888 788887654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.4e-08 Score=92.24 Aligned_cols=155 Identities=13% Similarity=0.077 Sum_probs=91.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC---CCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK---DPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~---~~~~~~fD~ 316 (441)
+.-+|||+|||+|..++.++....+ .+++|+|+++++++.+++|++++++ +++.+++.+....... ....++||.
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~-~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCC-ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3568999999999999999998754 7999999999999999999999998 4587777655433211 111257999
Q ss_pred EEEcCCCCCCcccccc-cCccCCCCCCCCCCCcccHHHHHH--HHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 317 ILLDPSCSGSGTAAER-LDHLLPSHASGHTADPTEMERLNK--LSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~~~~~~--l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
|+++||.-.+.-.... .+.+...+...........+-..+ -...-++++..+..+++ .|.+ ||=+...++-.-
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~---t~~ig~~~~l~~ 216 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY---SCMLGKKCSLAP 216 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCE---EEEESSTTSHHH
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEE---EEEecchhhHHH
Confidence 9999998654321110 000000000000000000000000 01245677888877665 5654 233456677666
Q ss_pred HHHHhch
Q 013515 393 IKSVLPI 399 (441)
Q Consensus 393 V~~~l~~ 399 (441)
|...|..
T Consensus 217 i~~~L~~ 223 (250)
T d2h00a1 217 LKEELRI 223 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=3.7e-09 Score=96.40 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++ +..+ ++.+|+.+++..+ ++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~--~~~~~~~~l~~~~---~~fD~ii~ 108 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN--VVEAKAEDLPFPS---GAFEAVLA 108 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC--EEECCTTSCCSCT---TCEEEEEE
T ss_pred CCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc--ccccccccccccc---ccccceee
Confidence 46789999999999999999875 36899999999999998875 3333 5678998887554 78999974
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.76 E-value=9.7e-09 Score=95.14 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=72.5
Q ss_pred hhhcCcccccch---hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 217 LIVNGCVFLQGK---ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 217 ~~~~g~~~~Qd~---ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
+...|+-.+.+. .+......+...++.+|||+|||+|..|.+++.... ..|+++|+++.+++.+++++.. .++
T Consensus 66 ~mlgg~~~~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~--~~~ 141 (254)
T d1xtpa_ 66 GVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG--MPV 141 (254)
T ss_dssp HHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT--SSE
T ss_pred cccCCccccchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc--ccc
Confidence 344455443222 233444455566788999999999999999876642 4899999999999999987753 457
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 294 IEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 294 v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+++.++|+.+++... ++||+|++-
T Consensus 142 ~~~~~~d~~~~~~~~---~~fD~I~~~ 165 (254)
T d1xtpa_ 142 GKFILASMETATLPP---NTYDLIVIQ 165 (254)
T ss_dssp EEEEESCGGGCCCCS---SCEEEEEEE
T ss_pred ceeEEccccccccCC---CccceEEee
Confidence 899999999887654 789999973
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=4.9e-09 Score=94.95 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=78.0
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
...+++..+.......+||++|+|+|..|+++|..++..|+|+++|.++...+.+++++++.|+ +++++..+|+.+..+
T Consensus 46 ~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~ 125 (219)
T d2avda1 46 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD 125 (219)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence 3456666666666678999999999999999999987789999999999999999999999998 459999999866432
Q ss_pred C---CCCCCCccEEEEcCC
Q 013515 307 K---DPAYSEVRAILLDPS 322 (441)
Q Consensus 307 ~---~~~~~~fD~Il~DpP 322 (441)
. ....++||.|++|.-
T Consensus 126 ~~~~~~~~~~fD~ifiD~d 144 (219)
T d2avda1 126 ELLAAGEAGTFDVAVVDAD 144 (219)
T ss_dssp HHHHTTCTTCEEEEEECSC
T ss_pred hhhhhcccCCccEEEEeCC
Confidence 1 111268999999976
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.4e-08 Score=96.69 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=65.0
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
....+|.+|||+|||+|..++.+|+. +..+|+|+|.++.+.. +++.....|. ++|.++++|+.++.... .+||
T Consensus 31 ~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~---~~~D 104 (311)
T d2fyta1 31 PHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPV---EKVD 104 (311)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSC---SCEE
T ss_pred cccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCcc---ccce
Confidence 34567999999999999999988875 3469999999998764 5666666665 78999999999987554 6899
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
+|+.++.
T Consensus 105 ~Ivse~~ 111 (311)
T d2fyta1 105 VIISEWM 111 (311)
T ss_dssp EEEECCC
T ss_pred EEEEeee
Confidence 9998765
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.72 E-value=5.3e-08 Score=89.83 Aligned_cols=122 Identities=20% Similarity=0.147 Sum_probs=89.3
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
..++.....++..++..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+ ++|.++.+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~ 140 (253)
T d1tw3a2 63 CDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFF 140 (253)
T ss_dssp TTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HhHHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccch
Confidence 3444555566677777788899999999999999999986 4578999998 6789999999999987 67999999986
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+..+ .+||+|++ + .++.. ++.++ ..++|+++.+.++ ||.|+...
T Consensus 141 ~~~~-----~~~D~v~~----~--~vlh~-----------------~~d~~-------~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 141 EPLP-----RKADAIIL----S--FVLLN-----------------WPDHD-------AVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp SCCS-----SCEEEEEE----E--SCGGG-----------------SCHHH-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcc-----cchhheee----c--ccccc-----------------CCchh-------hHHHHHHHHHhcCCCcEEEEEe
Confidence 5322 46899985 1 22211 11121 1467899988887 67666543
Q ss_pred C
Q 013515 382 C 382 (441)
Q Consensus 382 C 382 (441)
.
T Consensus 186 ~ 186 (253)
T d1tw3a2 186 R 186 (253)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.72 E-value=1.4e-08 Score=91.98 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=59.0
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+..-..+.+|||+|||+|..+..++.. ..+|+|+|+++.+++.++++.. +++.++++|+.++... ++||
T Consensus 15 ~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~----~~fD 83 (225)
T d2p7ia1 15 FTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLP----RRYD 83 (225)
T ss_dssp HGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCS----SCEE
T ss_pred hhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc----cccccccccccccccc----cccc
Confidence 334445779999999999999988765 2579999999999999987642 4789999999887643 6899
Q ss_pred EEEE
Q 013515 316 AILL 319 (441)
Q Consensus 316 ~Il~ 319 (441)
.|++
T Consensus 84 ~I~~ 87 (225)
T d2p7ia1 84 NIVL 87 (225)
T ss_dssp EEEE
T ss_pred cccc
Confidence 9985
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=1.1e-08 Score=97.70 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=65.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+|.+|||+|||+|..+..+|+. ++.+|+|+|.++. ...++++++.+|. ++|.++++|+.++.... ++||.|
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~---~~~D~i 104 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDII 104 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccccc---ceeEEE
Confidence 347999999999999999888775 3468999999975 5778888888887 56999999999987553 689999
Q ss_pred EEcCCC
Q 013515 318 LLDPSC 323 (441)
Q Consensus 318 l~DpPC 323 (441)
+.+...
T Consensus 105 vs~~~~ 110 (316)
T d1oria_ 105 ISEWMG 110 (316)
T ss_dssp EECCCB
T ss_pred eeeeee
Confidence 988664
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=1.3e-08 Score=97.79 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
...+|.+|||+|||+|..+..+|+. +..+|+|+|.++ ++..++++.+..|. .+|+++++|+.++.... .+||.
T Consensus 35 ~~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~---~~~D~ 108 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVDI 108 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEEE
T ss_pred ccCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc---cceeE
Confidence 3457999999999999999888775 346999999996 77889999999887 57999999999887553 68999
Q ss_pred EEEcCC
Q 013515 317 ILLDPS 322 (441)
Q Consensus 317 Il~DpP 322 (441)
|+.+..
T Consensus 109 i~se~~ 114 (328)
T d1g6q1_ 109 IISEWM 114 (328)
T ss_dssp EEECCC
T ss_pred EEEEec
Confidence 998765
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.67 E-value=1.2e-08 Score=92.69 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=77.0
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
.+++..++......+||++|++.|..|++||+.++..|+|+++|.+++..+.+++++++.|+ ++|+++.+|+.+..+..
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l 127 (227)
T d1susa1 48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM 127 (227)
T ss_dssp HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHH
Confidence 45555555555677999999999999999999988789999999999999999999999998 46999999997654321
Q ss_pred ----CCCCCccEEEEcCC
Q 013515 309 ----PAYSEVRAILLDPS 322 (441)
Q Consensus 309 ----~~~~~fD~Il~DpP 322 (441)
...++||.|++|+-
T Consensus 128 ~~~~~~~~~fD~iFiDa~ 145 (227)
T d1susa1 128 IKDEKNHGSYDFIFVDAD 145 (227)
T ss_dssp HHCGGGTTCBSEEEECSC
T ss_pred HhccccCCceeEEEeccc
Confidence 01257999999975
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=5.7e-08 Score=85.05 Aligned_cols=154 Identities=23% Similarity=0.259 Sum_probs=98.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----CCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----PAYSE 313 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~~~~~ 313 (441)
.+++..|||+|||||+.+..+.+.+.+.+.|+++|+.+- ..++++.++.+|+.+..... ....+
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcc
Confidence 478999999999999999999998888899999998751 13578899999987643110 01257
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
||.|+.|...--+|.- ..+-....++-...|.-|.+.++ ||.+| |=++..+....
T Consensus 89 ~DlVlSD~ap~~sg~~---------------------~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV---~K~F~g~~~~~ 144 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTP---------------------AVDIPRAMYLVELALEMCRDVLAPGGSFV---VKVFQGEGFDE 144 (180)
T ss_dssp EEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEEEEEEE---EEEESSTTHHH
T ss_pred eeEEEecccchhcccc---------------------hhHHHHHHHHHHHHHHhhhhccCCCCcEE---EEEecCccHHH
Confidence 9999999776555531 12223344444555666677666 78665 33343444444
Q ss_pred HHHHhchhcCCCeEEec-CCCCCCCccccccccceeeeec
Q 013515 393 IKSVLPIAMSFGFQLAT-PFPNGTAEASQFLKALSIYFEP 431 (441)
Q Consensus 393 V~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~p 431 (441)
+.+.|. .-|+-+. ..|.-.+..+.-..-++..|-|
T Consensus 145 l~~~l~----~~F~~V~~~KP~aSR~~SsE~Ylv~~g~Kp 180 (180)
T d1ej0a_ 145 YLREIR----SLFTKVKVRKPDSSRARSREVYIVATGRKP 180 (180)
T ss_dssp HHHHHH----HHEEEEEEECCTTSCTTCCEEEEEEEEECC
T ss_pred HHHHHH----hhcCEEEEECCCCcccCCceEEEEEecCCC
Confidence 545553 2354333 3455555555554445555544
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=5.4e-08 Score=93.41 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=69.0
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-------CC--CcEEEEecc
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-------GA--ANIEVLHGD 300 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-------g~--~~v~~~~~D 300 (441)
..-+...++++++++|||+|||.|..+.++|... +..+++|+|+++.+++.++++.+.. |. .+|.++++|
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 3445567889999999999999999999999875 4578999999999999988776653 33 579999999
Q ss_pred CCCCCCCCCCCCCccEEEEc
Q 013515 301 FLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+.+..+. ....|+|++.
T Consensus 219 ~~~~~~~~~-~~~advi~~~ 237 (328)
T d1nw3a_ 219 FLSEEWRER-IANTSVIFVN 237 (328)
T ss_dssp TTSHHHHHH-HHHCSEEEEC
T ss_pred ccccccccc-cCcceEEEEc
Confidence 988764321 1234778754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=1.8e-08 Score=89.81 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++++|||+|||+|..+..++ +++++|+++.+++.++++ ++.++++|+.+++..+ ++||.|++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~---~~fD~I~~ 97 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKD---ESFDFALM 97 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCT---TCEEEEEE
T ss_pred CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc-------cccccccccccccccc---cccccccc
Confidence 457799999999998876552 468999999999998763 5789999999987654 78999984
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
+ +++..-+| + .++|..+.+.++ ||.++.++...
T Consensus 98 ----~--~~l~h~~d----------------~----------~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 98 ----V--TTICFVDD----------------P----------ERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp ----E--SCGGGSSC----------------H----------HHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ----c--cccccccc----------------c----------ccchhhhhhcCCCCceEEEEecCC
Confidence 2 33322111 1 256777888777 67777666543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.59 E-value=1.9e-07 Score=92.68 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=106.6
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC------------cEEEEEeCCHHHHHHHHHHHH
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK------------GKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~------------~~V~a~D~~~~rl~~l~~~~~ 287 (441)
.|.|+=-..-+.+++.++++.++++|+|-|||+|++.+.+.+.+... ..++++|+++.....++-++-
T Consensus 141 ~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 141 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred chhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 35555545567788899999999999999999999999988876432 249999999999999999999
Q ss_pred HhCCC--cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 013515 288 LSGAA--NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL 365 (441)
Q Consensus 288 ~~g~~--~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL 365 (441)
..|.. +..+.++|....... .+||+|+.+||.+....-.. +. ...... .. + ...+...+
T Consensus 221 l~g~~~~~~~i~~~d~l~~~~~----~~fD~Ii~NPPfg~~~~~~~--~~--~~~~~~--~~--~-------~~~~~~Fi 281 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEKEPS----TLVDVILANPPFGTRPAGSV--DI--NRPDFY--VE--T-------KNNQLNFL 281 (425)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS----SCEEEEEECCCSSCCCTTCC--CC--CCTTSS--SC--C-------SCHHHHHH
T ss_pred hcCCccccceeecCchhhhhcc----cccceEEecCCCCCCccccc--hh--hhhhcc--cc--c-------ccHHHHHH
Confidence 88863 455677887754432 68999999999865432111 11 000000 00 0 11244578
Q ss_pred HHHhCCCC-CcEEEEE--cCCCCChhcHHHHHHHh
Q 013515 366 RHALSFPG-VERVVYS--TCSIHQVENEDVIKSVL 397 (441)
Q Consensus 366 ~~a~~~~~-~G~lvYs--TCS~~~~ENe~vV~~~l 397 (441)
.+++++++ +|++++. ..+++....+.-+.+.|
T Consensus 282 ~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~L 316 (425)
T d2okca1 282 QHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL 316 (425)
T ss_dssp HHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHH
Confidence 88888777 6754444 34454444444555555
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=2.5e-07 Score=90.70 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=64.5
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-------C--CcEEE-EeccC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------A--ANIEV-LHGDF 301 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-------~--~~v~~-~~~D~ 301 (441)
-+...+++++|++|||+|||.|..+.++|...+ .++|+|+|+++.+++.++++.+..+ . ..+.+ ..+|+
T Consensus 207 ~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f 285 (406)
T d1u2za_ 207 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 285 (406)
T ss_dssp HHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech
Confidence 355678899999999999999999999998864 4699999999999999999988643 1 22333 45555
Q ss_pred CCCCCCCCCCCCccEEEEc
Q 013515 302 LNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~D 320 (441)
...+..+.....+|+|+++
T Consensus 286 ~~~~~~d~~~~~adVV~in 304 (406)
T d1u2za_ 286 VDNNRVAELIPQCDVILVN 304 (406)
T ss_dssp TTCHHHHHHGGGCSEEEEC
T ss_pred hhccccccccccceEEEEe
Confidence 4433221123457888875
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.47 E-value=2.4e-07 Score=84.45 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=72.6
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
....++..+++.++++||++|+|+|..|..|+.. ..+|+|+|+|+..++.++++... .+|++++++|+.+++...
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccccc
Confidence 3456677788899999999999999999999986 36899999999999999887643 468999999999887542
Q ss_pred CCCCCccEEEEcCCCC
Q 013515 309 PAYSEVRAILLDPSCS 324 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCS 324 (441)
.....|+.+.|+.
T Consensus 84 ---~~~~~vv~NLPYn 96 (235)
T d1qama_ 84 ---NQSYKIFGNIPYN 96 (235)
T ss_dssp ---SCCCEEEEECCGG
T ss_pred ---cccceeeeeehhh
Confidence 2345788999974
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.41 E-value=1.1e-06 Score=80.90 Aligned_cols=83 Identities=22% Similarity=0.204 Sum_probs=67.0
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
...++..++..+..+|||+|||+|..+..+++.. +..+++++|+ ++.++.++++++..|. +++.++.+|+....+
T Consensus 70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p-- 145 (256)
T d1qzza2 70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-- 145 (256)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--
T ss_pred HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc--
Confidence 3444455566677899999999999999999985 4579999997 7899999999999887 569999999875321
Q ss_pred CCCCCccEEEE
Q 013515 309 PAYSEVRAILL 319 (441)
Q Consensus 309 ~~~~~fD~Il~ 319 (441)
..||+|++
T Consensus 146 ---~~~D~v~~ 153 (256)
T d1qzza2 146 ---VTADVVLL 153 (256)
T ss_dssp ---CCEEEEEE
T ss_pred ---ccchhhhc
Confidence 45899986
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.38 E-value=2.2e-07 Score=84.98 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=72.8
Q ss_pred hHHHHHHhCCCCC--CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---------CcEEEEe
Q 013515 230 SSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------ANIEVLH 298 (441)
Q Consensus 230 s~l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---------~~v~~~~ 298 (441)
...++.+++.+++ .+|||++||.|.-++.+|.+ ..+|+++|.++.....+++++++... .++++++
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 4566667776655 48999999999999999987 26899999999999999998887542 3799999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+.++..... ..||+|.+||+.
T Consensus 152 ~Ds~~~L~~~~--~~~DvIYlDPMF 174 (250)
T d2oyra1 152 ASSLTALTDIT--PRPQVVYLDPMF 174 (250)
T ss_dssp SCHHHHSTTCS--SCCSEEEECCCC
T ss_pred CcHHHHHhccC--CCCCEEEECCCC
Confidence 99887765432 579999999995
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=5.9e-07 Score=82.13 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g 290 (441)
..+|.+|||+|||+|..+..++.. +...|+|+|+|+.+++.++++++..+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~ 98 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEP 98 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhcc
Confidence 456889999999999988776654 23479999999999999999987654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=6.8e-07 Score=90.95 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=100.8
Q ss_pred hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC-----------------cEEEEEeCCHHHHHH
Q 013515 219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----------------GKIVACELNKERVRR 281 (441)
Q Consensus 219 ~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~-----------------~~V~a~D~~~~rl~~ 281 (441)
..|.|+=-..-+.+++.++.+.++++|+|-|||+|++.+.+.+.+... ..++++|+++.....
T Consensus 142 ~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 142 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred ccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 346666555667888899999999999999999999998887765321 258999999999999
Q ss_pred HHHHHHHhCCCc-----EEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHH
Q 013515 282 LKDTIKLSGAAN-----IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNK 356 (441)
Q Consensus 282 l~~~~~~~g~~~-----v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
++-|+-..|... -.+..++...-+.. ...+||+|+.+||.+...-..+..... ...+
T Consensus 222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~--~~~kfD~Ii~NPPfg~~~~~~~~~~~~----------~~~~------ 283 (524)
T d2ar0a1 222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFV----------HPTS------ 283 (524)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCS----------SCCS------
T ss_pred HHHHHHhhcccccccccchhhhhhhhhhccc--ccccceeEEecCCccccccccchhhhc----------cccc------
Confidence 999998777531 11223333321111 125799999999986544321110000 0001
Q ss_pred HHHHHHHHHHHHhCCCC-CcEEEEEc-CCC-CChhcHHHHHHHh
Q 013515 357 LSAFQKKALRHALSFPG-VERVVYST-CSI-HQVENEDVIKSVL 397 (441)
Q Consensus 357 l~~~Q~~lL~~a~~~~~-~G~lvYsT-CS~-~~~ENe~vV~~~l 397 (441)
..+...+.++++.++ +|++++.+ -++ +..-.+..+.+.|
T Consensus 284 --~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~L 325 (524)
T d2ar0a1 284 --NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 325 (524)
T ss_dssp --CHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHH
T ss_pred --cccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHH
Confidence 123467888888877 67766654 243 2333345566655
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=9.4e-07 Score=82.19 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=72.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhc----C-CcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEE--EeccCCCCC---CC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMK----G-KGKIVACELNKERVRRLKDTIKLSG-AANIEV--LHGDFLNLD---PK 307 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~----~-~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~--~~~D~~~~~---~~ 307 (441)
.+++.+|||+|||+|..+..++..+. + ...++++|+++.+++.++++++... +.++.+ ...++..+. ..
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 44555899999999999998877542 1 2478999999999999999987643 345543 333332210 00
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
....++||.|++ ..++-.-+| + ...|.+..++++ +|.|+.++.+
T Consensus 118 ~~~~~~fD~I~~------~~~l~~~~d----------------~----------~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 118 KKELQKWDFIHM------IQMLYYVKD----------------I----------PATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp SSSCCCEEEEEE------ESCGGGCSC----------------H----------HHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cCCCCceeEEEE------ccceecCCC----------------H----------HHHHHHHHhhCCCCCEEEEEEec
Confidence 001268999985 222321111 1 367888888887 6777665443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=1e-05 Score=71.83 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|+|+|+|.|-=++.+|-.. +..+++.+|.+.+++.-+++..+.+|++|+++++..+.++... .+||+|++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~----~~fD~V~s 138 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE----PPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC----SCEEEEEC
T ss_pred cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccc----cccceehh
Confidence 36799999999999999998764 5689999999999999999999999999999999999987643 57999963
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=4.3e-06 Score=77.64 Aligned_cols=87 Identities=26% Similarity=0.339 Sum_probs=73.6
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
...++..+++.+++.||++|+|+|..|..|++. ..+|+|+|+|+..++.+++.+..... .+++++++|+...+..
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~- 85 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP- 85 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-
Confidence 445667788999999999999999999999987 25999999999999999998876544 6899999999887643
Q ss_pred CCCCCccEEEEcCCCC
Q 013515 309 PAYSEVRAILLDPSCS 324 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCS 324 (441)
.++.|+.+.|++
T Consensus 86 ----~~~~vV~NLPY~ 97 (278)
T d1zq9a1 86 ----FFDTCVANLPYQ 97 (278)
T ss_dssp ----CCSEEEEECCGG
T ss_pred ----hhhhhhcchHHH
Confidence 357899999974
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.15 E-value=1.8e-07 Score=85.79 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=73.0
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
...++..+++.+++.|||+|+|+|..|..|++. ..+|+|+|+|+.+++.+++++. +.+|++++++|+.+++...
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~- 91 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN- 91 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC-
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhcccccc-
Confidence 456778889999999999999999999999987 3689999999999888876654 2368999999999887553
Q ss_pred CCCCccEEEEcCCCC
Q 013515 310 AYSEVRAILLDPSCS 324 (441)
Q Consensus 310 ~~~~fD~Il~DpPCS 324 (441)
..++.|+.+.|..
T Consensus 92 --~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 92 --KQRYKIVGNIPYH 104 (245)
T ss_dssp --SSEEEEEEECCSS
T ss_pred --ceeeeEeeeeehh
Confidence 4567899999974
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=7.1e-06 Score=75.57 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=38.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~ 288 (441)
+...|.+|||+|||||..++..+.. ...+|+++|.++.+++.+++.++.
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~ 99 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQE 99 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhc
Confidence 3456899999999999877654433 235899999999999999987754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.85 E-value=2e-05 Score=71.22 Aligned_cols=83 Identities=7% Similarity=0.033 Sum_probs=69.1
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
++....+.+|+|+|+|.|-=++.+|-..+ ..+++-+|.+..++.-+++..+.+|++|+.+++..++.+.......++||
T Consensus 65 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D 143 (239)
T d1xdza_ 65 YVDFNQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYD 143 (239)
T ss_dssp TSCGGGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred hhcccCCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccce
Confidence 34334577999999999999999987754 58999999999999999999999999999999998887764332236899
Q ss_pred EEEE
Q 013515 316 AILL 319 (441)
Q Consensus 316 ~Il~ 319 (441)
+|+.
T Consensus 144 ~v~s 147 (239)
T d1xdza_ 144 IVTA 147 (239)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.84 E-value=9.6e-06 Score=76.62 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh--CC---CcEEEEeccCCCCCCCCCCCCCc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA---ANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~--g~---~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
....+||.+|.|.|+.+..+.+. .+..+|+++|+++..++.+++.+... +. ++++++.+|+..+..... .+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~--~~y 152 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE--ERY 152 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC--CCE
T ss_pred CCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcC--Ccc
Confidence 34569999999999988887765 34579999999999999999988653 21 579999999988764432 679
Q ss_pred cEEEEcCC
Q 013515 315 RAILLDPS 322 (441)
Q Consensus 315 D~Il~DpP 322 (441)
|+|++|++
T Consensus 153 DvIi~D~~ 160 (312)
T d1uira_ 153 DVVIIDLT 160 (312)
T ss_dssp EEEEEECC
T ss_pred cEEEEeCC
Confidence 99999986
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.78 E-value=1.3e-05 Score=75.02 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=66.4
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~ 309 (441)
+.++.+. ..+||-+|.|.|+.+..+...- +..+|+++|+++..++.+++.+.... -++++++.+|+..+.....
T Consensus 83 pl~~~~~-pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~ 160 (295)
T d1inla_ 83 PMFLHPN-PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK 160 (295)
T ss_dssp HHHHSSS-CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS
T ss_pred hHhhCCC-CceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCC
Confidence 3344544 4699999999999888877653 34689999999999999999876532 2579999999988775543
Q ss_pred CCCCccEEEEcCCCC
Q 013515 310 AYSEVRAILLDPSCS 324 (441)
Q Consensus 310 ~~~~fD~Il~DpPCS 324 (441)
.+||+|++|++..
T Consensus 161 --~~yDvIi~D~~dp 173 (295)
T d1inla_ 161 --NEFDVIIIDSTDP 173 (295)
T ss_dssp --SCEEEEEEEC---
T ss_pred --CCCCEEEEcCCCC
Confidence 6899999999864
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=6.8e-06 Score=75.24 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=71.5
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
...++..+++.+|+.||++|+|+|..|..|++. ..+|+|+|+|+..++.+++.... -+|++++++|+.+++...-
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~~~~~~ 84 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhhccccc
Confidence 345677888999999999999999999999875 36899999999999999875432 2589999999998764310
Q ss_pred --CCCCccEEEEcCCCCCCc
Q 013515 310 --AYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 310 --~~~~fD~Il~DpPCSg~G 327 (441)
.....-.|+.+.|.+-+.
T Consensus 85 ~~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 85 AEKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHHTSCEEEEEECCTTTHH
T ss_pred ccccCCCeEEEecchHHHHH
Confidence 001224788999986543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.62 E-value=9.2e-05 Score=68.34 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CC---CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GA---ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~---~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
....+||-+|.|.|+.+..+.+. .+..+|+.+|+++..++.+++.+... +. ++++++.+|+..+..... .+||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~--~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSE--NQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCC--SCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcC--CCCC
Confidence 34579999999999998888765 34479999999999999999987643 22 579999999987664432 6899
Q ss_pred EEEEcCCCC
Q 013515 316 AILLDPSCS 324 (441)
Q Consensus 316 ~Il~DpPCS 324 (441)
+|++|++..
T Consensus 151 vIi~D~~~p 159 (274)
T d1iy9a_ 151 VIMVDSTEP 159 (274)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=7.1e-05 Score=69.49 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
....+||-+|.|.|+.+..+.+. .+..+|+.+|+++..++.+++.+.... -++++++.+|+..+..... ++||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~--~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQ--DAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCS--SCEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCC--CCCC
Confidence 34579999999999988888765 345799999999999999999876431 2579999999987765432 6899
Q ss_pred EEEEcCCC
Q 013515 316 AILLDPSC 323 (441)
Q Consensus 316 ~Il~DpPC 323 (441)
+|++|++-
T Consensus 154 vIi~D~~~ 161 (285)
T d2o07a1 154 VIITDSSD 161 (285)
T ss_dssp EEEEECC-
T ss_pred EEEEcCCC
Confidence 99999873
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.43 E-value=0.00022 Score=66.43 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=61.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+|++||.||.+.-+-.. +-..+.|+|+++.+.+..+.|. + + .++.+|+.++.... ...+|+++.-|||
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~---~--~-~~~~~Di~~~~~~~--~~~~dll~~g~PC 71 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S--A-KLIKGDISKISSDE--FPKCDGIIGGPPC 71 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC---C--S-EEEESCTTTSCGGG--SCCCSEEEECCCC
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C--C-CCccCChhhCCHhH--cccccEEeecccc
Confidence 7999999999998877554 3345679999999999888774 2 2 45789999887543 3578999999999
Q ss_pred CCCccccc
Q 013515 324 SGSGTAAE 331 (441)
Q Consensus 324 Sg~G~~~~ 331 (441)
.+.....+
T Consensus 72 q~fS~ag~ 79 (324)
T d1dcta_ 72 QSWSEGGS 79 (324)
T ss_dssp TTTSSSSC
T ss_pred cccccccc
Confidence 99876654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.41 E-value=8.9e-05 Score=69.50 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=65.4
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCC
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~ 311 (441)
++.+ ...+||-+|.|.|+.+..+.+. .+-.+|+.+|+++..++.+++.+..+. -++++++.+|+..+.....
T Consensus 102 ~~~~-~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~-- 177 (312)
T d2b2ca1 102 FAHP-DPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHK-- 177 (312)
T ss_dssp HHSS-SCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCT--
T ss_pred hcCC-CCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCC--
Confidence 3444 3569999999999988887764 334699999999999999999875432 2579999999987764432
Q ss_pred CCccEEEEcCCC
Q 013515 312 SEVRAILLDPSC 323 (441)
Q Consensus 312 ~~fD~Il~DpPC 323 (441)
.+||+|++|++-
T Consensus 178 ~~yDvII~D~~d 189 (312)
T d2b2ca1 178 NEFDVIITDSSD 189 (312)
T ss_dssp TCEEEEEECCC-
T ss_pred CCCCEEEEcCCC
Confidence 689999999884
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=7.2e-05 Score=70.58 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=54.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
.+|+|+|||.||.+.-+-.. +=. .-|.|+|+++.+++..+.|. ++..++++|+.++...+-....+|+++.-|
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 47999999999998776543 211 23789999999999888774 234567788887764321113689999999
Q ss_pred CCCCCccccc
Q 013515 322 SCSGSGTAAE 331 (441)
Q Consensus 322 PCSg~G~~~~ 331 (441)
||.+..+..+
T Consensus 77 PCq~fS~ag~ 86 (343)
T d1g55a_ 77 PCQPFTRIGR 86 (343)
T ss_dssp C---------
T ss_pred cccccccccc
Confidence 9999877654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.25 E-value=0.00028 Score=66.17 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.+.+|||++||.||.+.-+-+. +-..|.|+|+++.+++..+.|.. + ..++|+.++.... ...+|+|+.-
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~--~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKT--IPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGG--SCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhh--cceeeeeecc
Confidence 4789999999999999877553 33467889999999999998863 1 2358888877543 3578999999
Q ss_pred CCCCCCccccc
Q 013515 321 PSCSGSGTAAE 331 (441)
Q Consensus 321 pPCSg~G~~~~ 331 (441)
|||.+.....+
T Consensus 79 pPCq~fS~ag~ 89 (327)
T d2c7pa1 79 FPCQAFSISGK 89 (327)
T ss_dssp CCCTTTCTTSC
T ss_pred cccchhhhhhh
Confidence 99998876543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.25 E-value=0.0001 Score=68.17 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh----------CCCcEEEEeccCCCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----------GAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~----------g~~~v~~~~~D~~~~~~~~~ 309 (441)
....+||-+|.|.|+.+..+... +..+|+++|+++..++.+++.+... .-++++++.+|+..+....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~- 147 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN- 147 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC-
T ss_pred CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc-
Confidence 44679999999999988877653 3468999999999999998766321 1257999999998765433
Q ss_pred CCCCccEEEEcCCC
Q 013515 310 AYSEVRAILLDPSC 323 (441)
Q Consensus 310 ~~~~fD~Il~DpPC 323 (441)
++||+|++|++.
T Consensus 148 --~~yDvIi~D~~~ 159 (276)
T d1mjfa_ 148 --RGFDVIIADSTD 159 (276)
T ss_dssp --CCEEEEEEECCC
T ss_pred --CCCCEEEEeCCC
Confidence 679999999995
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.18 E-value=0.0006 Score=63.19 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
...+||=+|.|.|+.+..+.+. .+-.+|+.+|+++..++.+++.+.... -++++++.+|+........ .++||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~-~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-EGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-TTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc-ccCccE
Confidence 3569999999999988877664 334689999999999999999875432 2579999999887663321 157999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKS 395 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~ 395 (441)
|++|++.. .|... . + .+.+..+.+.+.|+ +|.+|.-+-| +..+.+.+..
T Consensus 158 Ii~D~~dp-~~~~~----~-L----------------------~t~eF~~~~~~~L~~~Gi~v~q~~s--~~~~~~~~~~ 207 (290)
T d1xj5a_ 158 VIVDSSDP-IGPAK----E-L----------------------FEKPFFQSVARALRPGGVVCTQAES--LWLHMDIIED 207 (290)
T ss_dssp EEECCCCT-TSGGG----G-G----------------------GSHHHHHHHHHHEEEEEEEEEECCC--TTTCHHHHHH
T ss_pred EEEcCCCC-CCcch----h-h----------------------CCHHHHHHHHHhcCCCcEEEEecCC--cHHHHHHHHH
Confidence 99999853 23210 0 0 11345555555566 6888876544 3345555555
Q ss_pred Hhc
Q 013515 396 VLP 398 (441)
Q Consensus 396 ~l~ 398 (441)
+++
T Consensus 208 i~~ 210 (290)
T d1xj5a_ 208 IVS 210 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.10 E-value=0.00019 Score=64.42 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc-CCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD-FLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D-~~~~~~~~~~~~~fD~I 317 (441)
.+++.+|+|+||||||.+-.++.+. +-..|.|+++--...+ .-...+.++.+.+.+...+ +..++ ...+|.|
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~l~-----~~~~D~v 136 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFFIP-----PERCDTL 136 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTTSC-----CCCCSEE
T ss_pred ccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-CCccccccccccccchhhhhHHhcC-----CCcCCEE
Confidence 5778899999999999999988763 2256777777321000 0000111222234444333 33222 1578999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-Cc-EEEEEcCCCCChhcH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VE-RVVYSTCSIHQVENE 390 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G-~lvYsTCS~~~~ENe 390 (441)
++|.-=| +|. + ..+.... .++|+-|.++++ || +++=.-|.+.|+.-|
T Consensus 137 lcDm~es-s~~----~----------------~vd~~Rt-----l~vLela~~wLk~gg~FvvKVl~py~~~v~e 185 (257)
T d2p41a1 137 LCDIGES-SPN----P----------------TVEAGRT-----LRVLNLVENWLSNNTQFCVKVLNPYMSSVIE 185 (257)
T ss_dssp EECCCCC-CSS----H----------------HHHHHHH-----HHHHHHHHHHCCTTCEEEEEESCCCSHHHHH
T ss_pred EeeCCCC-CCC----c----------------hhhhhhH-----HHHHHHHHHHcccCCEEEEEECCCCChHHHH
Confidence 9996433 332 1 1111111 246777777776 45 555555766555444
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.86 E-value=0.0006 Score=61.04 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=65.3
Q ss_pred cCcccccchhhHHHHH-HhCCCCCCEEEEEcCCCchHHHHHHHHh---cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 013515 220 NGCVFLQGKASSMVAA-ALAPKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANIE 295 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~-~l~~~~g~~VLDl~ag~G~kt~~la~~~---~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~ 295 (441)
.|.-++|.+.-+.+.+ ++.-.....||++|++.|+.++.++..+ +..++|+++|+++.+..... ...++|+
T Consensus 58 ~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I~ 132 (232)
T d2bm8a1 58 RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENIT 132 (232)
T ss_dssp TTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEE
T ss_pred cceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----cccccee
Confidence 3666777655443333 3332235599999999999999888765 45689999999876543221 2236899
Q ss_pred EEeccCCCCCCCC-CCCCCccEEEEcCC
Q 013515 296 VLHGDFLNLDPKD-PAYSEVRAILLDPS 322 (441)
Q Consensus 296 ~~~~D~~~~~~~~-~~~~~fD~Il~DpP 322 (441)
++.+|..+..... -....+|.|++|.-
T Consensus 133 ~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 133 LHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp EEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred eeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 9999987644211 01135899999976
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.0032 Score=58.99 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=56.3
Q ss_pred hHHHHHHhCCC------CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 230 SSMVAAALAPK------PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 230 s~l~~~~l~~~------~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
...++..+++. .++.|||+|.|+|..|..|..... ..+|+++|+++..++.+++.+. + ++++++++|+..
T Consensus 26 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~--~-~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 26 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE--G-SPLQILKRDPYD 101 (322)
T ss_dssp HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT--T-SSCEEECSCTTC
T ss_pred HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc--C-CCcEEEeCchhh
Confidence 44555666543 467899999999999999988743 3589999999999999987654 2 578999999986
Q ss_pred C
Q 013515 304 L 304 (441)
Q Consensus 304 ~ 304 (441)
+
T Consensus 102 ~ 102 (322)
T d1i4wa_ 102 W 102 (322)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.69 E-value=0.00056 Score=61.77 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC---------------------------------------CcEEEEEeCCHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG---------------------------------------KGKIVACELNKERVRR 281 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~---------------------------------------~~~V~a~D~~~~rl~~ 281 (441)
.+..++|-|||+|.+.+..|.+..+ ...+++.|+++++++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 3557999999999998887664321 1247899999999988
Q ss_pred H---HHHHHHhCC-CcEEEEeccCCCCCCCC--CCCCCccEEEEcCCC
Q 013515 282 L---KDTIKLSGA-ANIEVLHGDFLNLDPKD--PAYSEVRAILLDPSC 323 (441)
Q Consensus 282 l---~~~~~~~g~-~~v~~~~~D~~~~~~~~--~~~~~fD~Il~DpPC 323 (441)
+ ++|+++.|+ ..|.+...|+.+..+.. ......++|++|||+
T Consensus 130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY 177 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY 177 (249)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence 7 579999998 45888999987654311 001346899999996
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.86 E-value=0.018 Score=49.48 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHH----hcC---CcEEEEEeCCHHHHHHHHH
Q 013515 242 GWKVLDACSAPGNKTVHLAAL----MKG---KGKIVACELNKERVRRLKD 284 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~----~~~---~~~V~a~D~~~~rl~~l~~ 284 (441)
.-+||++|||+|-=+..||.. ... ..+|+|.|+++..++.+++
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~ 74 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 74 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence 448999999999854444333 221 2479999999999998873
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.81 E-value=0.01 Score=51.20 Aligned_cols=55 Identities=25% Similarity=0.313 Sum_probs=43.1
Q ss_pred HHHHhCCCCCCEEEEEcCCCch-HHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~-kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
.+...++++|++||-+|||+.| .+..++..+ +..+|+++|.+++|++.++ ++|.+
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~----~~Ga~ 72 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAK----AQGFE 72 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCE
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhh----hcccc
Confidence 4556789999999999999955 566666665 4579999999999998775 45764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.55 E-value=0.054 Score=44.81 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHhCCCCCCEEEEEcCCCchH-HHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 234 AAALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~k-t~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
....++++|++||-+|+|+-|. +.+++..+ + .+|+++|.++++++.+++ +|.+.
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G-a~vi~v~~~~~r~~~a~~----~ga~~ 73 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-G-AFVVCTARSPRRLEVAKN----CGADV 73 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----TTCSE
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhh-c-ccccccchHHHHHHHHHH----cCCcE
Confidence 3456789999999998885443 55556554 3 589999999999988755 56643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.20 E-value=0.012 Score=52.20 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=37.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~ 287 (441)
.+|+.|||-+||+|..+. .|..++ -+-+++|++++-++.++++++
T Consensus 211 ~~gd~VlDpF~GSGTT~~-aa~~~~--R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAI-VAKKLG--RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHH-HHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHH-HHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence 689999999999997554 444443 588999999999999999876
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.017 Score=48.27 Aligned_cols=76 Identities=13% Similarity=0.032 Sum_probs=49.2
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
...++++|++||-+|+|+ |..+.+++..++ .+|+++|.++++++.++ ++|.+.+. ...+..+..... .+.
T Consensus 21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~----~lGa~~~i-~~~~~~~~~~~~--~~~ 91 (168)
T d1piwa2 21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAM----KMGADHYI-ATLEEGDWGEKY--FDT 91 (168)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHH----HHTCSEEE-EGGGTSCHHHHS--CSC
T ss_pred HHhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhh----ccCCcEEe-eccchHHHHHhh--hcc
Confidence 346789999999999874 444556666653 58999999999988764 47876432 222211111111 256
Q ss_pred ccEEEE
Q 013515 314 VRAILL 319 (441)
Q Consensus 314 fD~Il~ 319 (441)
||.|+.
T Consensus 92 ~d~vi~ 97 (168)
T d1piwa2 92 FDLIVV 97 (168)
T ss_dssp EEEEEE
T ss_pred cceEEE
Confidence 898876
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.00 E-value=0.017 Score=51.88 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 289 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~ 289 (441)
.+|+.|||.+||+|..+. .|..++ -+.+++|+++.-++.++++++..
T Consensus 206 ~~gdiVLDpF~GSGTT~~-Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTAR-VAIQEG--RNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CTTCEEEETTCTTCHHHH-HHHHHT--CEEEEEESSTHHHHHHHHHHHHC
T ss_pred CCCCEEEecCCCCcHHHH-HHHHhC--CeEEEEeCCHHHHHHHHHHHHHh
Confidence 689999999999998554 444443 58999999999999999999875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.69 E-value=0.051 Score=48.31 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=50.7
Q ss_pred HHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCC
Q 013515 234 AAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 234 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+...+ .....+|+|+|+|+|..+..+++.. +..+++.+|+- ..+ +..+ .++|+++.+|+.+..+
T Consensus 73 ~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~~~~~p----- 138 (244)
T d1fp1d2 73 LEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVI-------ENAPPLSGIEHVGGDMFASVP----- 138 (244)
T ss_dssp HHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHH-------TTCCCCTTEEEEECCTTTCCC-----
T ss_pred HHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhh-------hccCCCCCeEEecCCcccccc-----
Confidence 33444 3456899999999999999999986 55789999973 332 2222 3689999999865322
Q ss_pred CCccEEEE
Q 013515 312 SEVRAILL 319 (441)
Q Consensus 312 ~~fD~Il~ 319 (441)
..|.|++
T Consensus 139 -~~D~~~l 145 (244)
T d1fp1d2 139 -QGDAMIL 145 (244)
T ss_dssp -CEEEEEE
T ss_pred -cceEEEE
Confidence 2488875
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.44 E-value=0.73 Score=41.96 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.+|.+||=. .|+|..+.+++..+ ..+-+|+++..+......+++....... ....++.+|..+...-......+|.
T Consensus 8 ~~~gk~VlVT-G~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 8 LPEGSLVLVT-GANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCcCEEEEE-CCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 3568999954 55699999998754 4446899999898888877766655443 3456677888766543333456788
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHH-HHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL-NKLSAFQKKALRHALSFPGVERVVYST 381 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~-~~l~~~Q~~lL~~a~~~~~~G~lvYsT 381 (441)
|+.-+-..+.. .+.... ......-..+|+.|.+......+||++
T Consensus 87 v~~~a~~~~~~---------------------~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S 131 (342)
T d1y1pa1 87 VAHIASVVSFS---------------------NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131 (342)
T ss_dssp EEECCCCCSCC---------------------SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred hhhhccccccc---------------------ccccccccchhhhHHHHHHhhhcccccccccccc
Confidence 87654432211 112222 223345668888887764456667643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.17 E-value=0.074 Score=47.17 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+|+|+|+|+|..+..+++..+ ..+++..|.. ..+ +..+. ++|+++.+|+.+.. ..+|++++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi-------~~~~~~~rv~~~~gD~f~~~------p~aD~~~l 144 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFP-KLKCIVFDRP-QVV-------ENLSGSNNLTYVGGDMFTSI------PNADAVLL 144 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECH-HHH-------TTCCCBTTEEEEECCTTTCC------CCCSEEEE
T ss_pred ceEEEEecCCccHHHHHHHHhCC-CCeEEEecCH-HHH-------HhCcccCceEEEecCcccCC------CCCcEEEE
Confidence 46899999999999999999864 5799999973 333 23333 68999999997632 24688875
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.05 E-value=0.022 Score=51.90 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 289 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~ 289 (441)
.+|+.|||.+||+|..+. .|..++ -+.+++|++++.++.+++++...
T Consensus 249 ~~gdiVlDpF~GSGTT~~-AA~~lg--R~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGL-VAERES--RKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CTTCEEEETTCTTCHHHH-HHHHTT--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred cCCCEEEecCCCCcHHHH-HHHHcC--CcEEEEeCCHHHHHHHHHHHHhc
Confidence 589999999999997544 444443 58999999999999998876543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.92 E-value=0.061 Score=51.29 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=47.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA 291 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~ 291 (441)
.+.+++.++|+||-.|..+..++....+ ..+|+|+|+++...+.+++|++.++.
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 4577899999999999999888877654 36999999999999999999998765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.79 E-value=0.049 Score=45.69 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=43.7
Q ss_pred HHHHHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 232 MVAAALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
-++...++++|++||=+|||+ |..+.++++.+ +..+|+++|.++++++.++ ++|.+.
T Consensus 18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~----~lGa~~ 75 (174)
T d1jqba2 18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAK----FYGATD 75 (174)
T ss_dssp HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHH----HHTCSE
T ss_pred HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHH----hhCccc
Confidence 344567899999999998887 66677777765 3458999999999998875 568653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.64 E-value=0.049 Score=45.74 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=40.3
Q ss_pred HhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
..++++|++||-+|||+ |..+++++..++ ..+|+++|.++++++.++ ++|.+.
T Consensus 23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~ 76 (182)
T d1vj0a2 23 YPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADL 76 (182)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred HhCCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccc----cccceE
Confidence 34678999999998875 555667777653 358999999999998764 467653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.085 Score=43.68 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=42.7
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
+....++++|++|+=+|+|+.|....+.....+..+|+++|.++++++.++ ++|.+.+
T Consensus 18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~----~~Ga~~~ 75 (171)
T d1pl8a2 18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGADLV 75 (171)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCSEE
T ss_pred HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH----HhCCccc
Confidence 344568899999999999887765544333344568999999999999764 4687643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.59 E-value=0.029 Score=46.82 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCCchHH-HHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 238 APKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt-~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
..+||+.||=.|+|+.|.. .+++..++ ...|+++|.++++++.++ ++|.+.
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~----~~ga~~ 80 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAE----RLGADH 80 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHH----HTTCSE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHh----hcccce
Confidence 3689999999999877665 45565554 468999999999988776 457653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.15 E-value=0.053 Score=45.51 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++|+.|+=.|+|+.|..........+..+|+++|.++++++.+++ +|.+.
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~----~GA~~ 77 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA----VGATE 77 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----HTCSE
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh----cCCcE
Confidence 34568999999999998777654443333455799999999999997754 57653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.11 Score=42.80 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=47.1
Q ss_pred HHHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
....++++|++||=.|+|+ |..+.+++..++ .+++++|.++++++.+ +++|.+.+ +...-...... ...
T Consensus 23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a----~~lGad~~--i~~~~~~~~~~--~~~ 92 (168)
T d1uufa2 23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAA----KALGADEV--VNSRNADEMAA--HLK 92 (168)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHH----HHHTCSEE--EETTCHHHHHT--TTT
T ss_pred HHHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHH----hccCCcEE--EECchhhHHHH--hcC
Confidence 3456789999999988764 334555666542 4778899999887655 45787643 22111111111 125
Q ss_pred CccEEEE
Q 013515 313 EVRAILL 319 (441)
Q Consensus 313 ~fD~Il~ 319 (441)
.+|.|+-
T Consensus 93 ~~D~vid 99 (168)
T d1uufa2 93 SFDFILN 99 (168)
T ss_dssp CEEEEEE
T ss_pred CCceeee
Confidence 6898876
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.91 E-value=0.059 Score=44.81 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=41.9
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++|++|+=.|+|+++....+.........|+++|.++++++.++ .+|.+.
T Consensus 22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd~ 76 (175)
T d1cdoa2 22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATD 76 (175)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCcE
Confidence 3457899999999999996665554444445679999999999988764 578764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.89 E-value=0.053 Score=45.39 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHH-HHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVH-LAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~-la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++|++||=+|||+.|.... ++..+ +..+|+++|.++++++.++ ++|.+.
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~----~lGa~~ 75 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATE 75 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHH----HcCCcE
Confidence 456789999999999988776544 45554 4579999999999998875 478754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=92.53 E-value=0.28 Score=43.04 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLN 303 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~ 303 (441)
...+|+|+|+|+|..+..+++.. +..+++.+|+-.. + +... ..++.++.+|+.+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~ 135 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFV 135 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTT
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-h-------hhcccCCceEEecccccc
Confidence 35689999999999999999986 4579999998642 2 1112 2579999999865
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.03 E-value=0.25 Score=43.62 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
+..+| +..|++|.+..++..+.. ..+|+.+|.+++.++.+.+.++..|. ++..+..|+.+...- ...++.
T Consensus 10 nKval-ITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 10 NKVAL-VTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SCEEE-EESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 55566 445667789988887644 35999999999999999999988875 577888999864311 123478
Q ss_pred ccEEEEcCCCCC
Q 013515 314 VRAILLDPSCSG 325 (441)
Q Consensus 314 fD~Il~DpPCSg 325 (441)
+|.++.++....
T Consensus 88 iDilvnnag~~~ 99 (251)
T d2c07a1 88 VDILVNNAGITR 99 (251)
T ss_dssp CCEEEECCCCCC
T ss_pred ceeeeecccccc
Confidence 999988776443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.01 E-value=0.16 Score=42.09 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++|++||=.|+|.++.+..+.....+..+|+++|.++++++.+++ +|.+.
T Consensus 22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~~ 76 (176)
T d2jhfa2 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATE 76 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE
T ss_pred HhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCee
Confidence 34678999999999997766544433333455799999999999987644 57653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.83 E-value=0.14 Score=42.79 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
...++++|++|+=+|||+ |..++++++.+ +...|++.|.+++|++.+ +++|.+.+
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a----~~~Ga~~~ 77 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKA----KALGATDC 77 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHH----HHTTCSEE
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHH----HHhCCCcc
Confidence 456789999999999998 55566667665 457999999999998765 45787543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.25 E-value=0.12 Score=42.92 Aligned_cols=55 Identities=24% Similarity=0.287 Sum_probs=38.5
Q ss_pred HHHhCCCCCCEEEEEcC-CC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 234 AAALAPKPGWKVLDACS-AP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~a-g~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
....+++||++||=.|+ |+ |..+.+++..++ .+|++++.++++++.++ .+|.+.+
T Consensus 20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~----~lGa~~~ 76 (171)
T d1iz0a2 20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPL----ALGAEEA 76 (171)
T ss_dssp HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHH----HTTCSEE
T ss_pred HHHhCCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccccccccc----cccccee
Confidence 34467899999997664 33 444555666653 58999999998887664 4787654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.34 Score=43.13 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~--~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|.=+.-|++|.+..+++.+. +..+|+.++.++++++.+.+.++..|. ++.++..|..+...-. ..++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 67776677788889988887652 346999999999999999999988875 5778888988754210 1246
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|+++.++-..
T Consensus 81 ~iDiLVnNAGi~ 92 (275)
T d1wmaa1 81 GLDVLVNNAGIA 92 (275)
T ss_dssp SEEEEEECCCCC
T ss_pred CcEEEEEcCCcC
Confidence 799999988543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.82 E-value=0.27 Score=40.60 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHhCCCCCCEEEEEcCCCchH-HHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 234 AAALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~k-t~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...++++||++||=+|||+-|. +.+++..++ ...|++.|.++.+++.+++ +|.+.
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~ 76 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATH 76 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSE
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeE
Confidence 3456799999999998876554 444555554 4688999999999888754 67653
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.69 Score=40.68 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|..||=.| |++|.+..++..+ ....+|+.+|.++++++.+.+.++..|.+ ++.++..|..+.... ...++
T Consensus 10 ~Kv~lITG-as~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 66677555 5577888888766 33469999999999999999999988763 678889999764311 01246
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
..|+++.++...
T Consensus 89 ~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 89 GVDICINNAGLA 100 (257)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEeccccc
Confidence 789999877544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.57 E-value=0.57 Score=38.02 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHhCCCCCCEEEEEcCCCchH-HHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 234 AAALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~k-t~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
....++++|++||=+|+|+-|. +.++++.+ + .+|+++|.++.+++.++ ++|.+.
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G-~~Vi~~~~~~~~~~~a~----~~Ga~~ 74 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAM-G-LHVAAIDIDDAKLELAR----KLGASL 74 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHc-C-CccceecchhhHHHhhh----ccCccc
Confidence 3457899999999988876554 44455554 3 69999999999998764 578754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.49 E-value=0.31 Score=39.98 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHhCCCCCCEEEEEcCCCchH-HHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~k-t~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...+++||++||=.|||+.+. +.+++..++ ...|+++|.++++++.++ ++|.+.
T Consensus 22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak----~lGa~~ 76 (176)
T d2fzwa2 22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATE 76 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred HhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHH----HhCCcE
Confidence 356789999999888775443 555666653 479999999999987654 578754
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.05 E-value=0.79 Score=40.27 Aligned_cols=84 Identities=6% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~-~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 311 (441)
.|..+| +..|++|.+..++..+. ...+|+.+|.+ .+.++.+.+.+...+-.++.++..|+.+...- ...+
T Consensus 3 ~gK~al-ITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 3 KGKVAV-VTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TTCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CcCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 366677 66677888888887663 34689999986 67788877776544324678889999874421 1124
Q ss_pred CCccEEEEcCCCCC
Q 013515 312 SEVRAILLDPSCSG 325 (441)
Q Consensus 312 ~~fD~Il~DpPCSg 325 (441)
+..|.++.++.-..
T Consensus 82 G~iDiLVnnAG~~~ 95 (260)
T d1x1ta1 82 GRIDILVNNAGIQH 95 (260)
T ss_dssp SCCSEEEECCCCCC
T ss_pred CCCcEEEeeccccc
Confidence 67899998876443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.75 E-value=0.89 Score=39.76 Aligned_cols=78 Identities=10% Similarity=0.149 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|.++| +..|++|.+..++..+ ....+|+.+|.+++.++.+.+.+... .++.++..|+.+...- ...++.
T Consensus 6 gK~al-VTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 6 GKVAI-ITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 55666 5556777888887765 33479999999999988887766432 4688889998864421 112467
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
.|.++.++.
T Consensus 83 iDiLVnnAg 91 (251)
T d1zk4a1 83 VSTLVNNAG 91 (251)
T ss_dssp CCEEEECCC
T ss_pred ceEEEeccc
Confidence 898887664
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.65 E-value=1.2 Score=39.14 Aligned_cols=82 Identities=9% Similarity=0.030 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC-C
Q 013515 242 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY-S 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~-~ 312 (441)
|.++| +..|++|.+..++..+ ....+|+.+|.+++.++.+.+.+...+. ++..+..|..+.... ...+ +
T Consensus 8 gK~al-VTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 8 AKTVL-VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 66677 5556677888887765 3346999999999999999998888775 678888898764311 0112 4
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
..|.++.++....
T Consensus 86 ~idilvnnAG~~~ 98 (259)
T d1xq1a_ 86 KLDILINNLGAIR 98 (259)
T ss_dssp CCSEEEEECCC--
T ss_pred CcccccccccccC
Confidence 6899998776543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.40 E-value=1.5 Score=35.18 Aligned_cols=55 Identities=22% Similarity=0.096 Sum_probs=40.4
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
....+++||++||=.|+|+-|..........+ .+|+++|.++++++.+ +.+|.+.
T Consensus 20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~----k~~Ga~~ 74 (168)
T d1rjwa2 20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELA----KELGADL 74 (168)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHH----HHTTCSE
T ss_pred HHHhCCCCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhh----hhcCcce
Confidence 34567899999999999887765544333333 5899999999998866 4478753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.22 E-value=1.1 Score=36.35 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHHHhCCCCCCEEEEEcC-CCchH-HHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 233 VAAALAPKPGWKVLDACS-APGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~a-g~G~k-t~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
+....++++|++||=.|+ |+.|. +..++..+ +...|+++|.++++++.+++ +|.+.
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~----~Ga~~ 76 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR----AGADY 76 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH----HTCSE
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHH----cCCce
Confidence 345568899999999996 54444 45556655 34699999999999888764 67653
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=84.58 E-value=2.9 Score=36.26 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|..+| +..|++|.+..++..+. ...+|+.+|.+++.++.+.+.++..|. ++..+..|+.+...- ...++.
T Consensus 2 gKVal-ITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVAL-VTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEE-EESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 33445 44566778888887663 346999999999999999999998885 577888998865421 123577
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
.|.++.++.-.
T Consensus 80 iDilVnnAG~~ 90 (257)
T d2rhca1 80 VDVLVNNAGRP 90 (257)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEeccccc
Confidence 89999877543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.92 E-value=2.1 Score=37.55 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~-~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|.+|| +..|++|.+..++..+.. ..+|+.+|.+ ++.++.+.+.++..|. ++.++..|..+...- ...++
T Consensus 18 gK~~l-ITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 18 GKVAL-VTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 66666 555677788888776643 3588888886 6788888888888875 577888888763311 11246
Q ss_pred CccEEEEcCCCCCCc
Q 013515 313 EVRAILLDPSCSGSG 327 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G 327 (441)
..|.++..+.....+
T Consensus 96 ~idilV~nag~~~~~ 110 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFG 110 (272)
T ss_dssp CCCEEEECCCCCCCC
T ss_pred CCCccccccccchhh
Confidence 789998887655443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.83 E-value=0.84 Score=37.30 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=39.0
Q ss_pred HhCCCCCCEEEEEcC--CCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 236 ALAPKPGWKVLDACS--APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 236 ~l~~~~g~~VLDl~a--g~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
..++++|++||-.|+ +.|..+++++..++ .+|++++.++++++.++ ++|.+.+
T Consensus 23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~v 77 (174)
T d1yb5a2 23 SACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVL----QNGAHEV 77 (174)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTCSEE
T ss_pred HhCCCCCCEEEEEeccccccccccccccccC--ccccccccccccccccc----ccCcccc
Confidence 446889999999886 34555667777753 58999998988877664 5788654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=83.78 E-value=1.3 Score=38.89 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|..+|=.| |++|.+..++..+ ....+|+.+|.+++.++.+.+.++..|. ++..+..|+.+...- ...++
T Consensus 4 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTG-AGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366777445 5677777777655 3346899999999999999999988875 577888898764311 11246
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
..|.++.++...+
T Consensus 82 ~iDilVnnaG~~~ 94 (260)
T d1zema1 82 KIDFLFNNAGYQG 94 (260)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCeehhhhcccc
Confidence 7899998876543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.55 E-value=1.3 Score=38.78 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCC-cEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGK-GKIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DP 309 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a-~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~ 309 (441)
|-.|.+|| +..|++|.+..++..+... .+|+. .+.+.+.++.+.+.++..|. ++..+..|+.+...- ..
T Consensus 3 ~L~GK~al-ITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 3 PLAGKVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHH
Confidence 33588888 6667899999998776433 46765 46778889999999999886 577889998764311 11
Q ss_pred CCCCccEEEEcCCC
Q 013515 310 AYSEVRAILLDPSC 323 (441)
Q Consensus 310 ~~~~fD~Il~DpPC 323 (441)
.++..|.++..+.-
T Consensus 81 ~~g~idilinnag~ 94 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGM 94 (259)
T ss_dssp HHSCEEEEECCCCC
T ss_pred HcCCCcEEEecccc
Confidence 24678988887753
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.78 E-value=2.3 Score=37.18 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.++|= ..|++|.+..+|..+. ...+|+.++.++++++.+.+.+...+...+.....|..+..... ...+
T Consensus 13 ~GK~alI-TGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g 91 (269)
T d1xu9a_ 13 QGKKVIV-TGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 91 (269)
T ss_dssp TTCEEEE-SSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEE-eCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence 3777774 4555667888877653 34699999999999999988777665556777777776533110 1135
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
..|.++.++....
T Consensus 92 ~~~~li~nag~~~ 104 (269)
T d1xu9a_ 92 GLDMLILNHITNT 104 (269)
T ss_dssp SCSEEEECCCCCC
T ss_pred Ccccccccccccc
Confidence 6788888765433
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.66 E-value=2 Score=37.38 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=55.1
Q ss_pred EcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCccEEEE
Q 013515 248 ACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVRAILL 319 (441)
Q Consensus 248 l~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD~Il~ 319 (441)
+..|++|.+..++..+. ...+|+.+|.+++.++.+.+.++..|. ++..+..|+.+...- ...++..|.++.
T Consensus 6 ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn 84 (255)
T d1gega_ 6 VTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVN 84 (255)
T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCccEEEe
Confidence 44456778888877653 346999999999999999999998875 577888999864411 113578999988
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
++-
T Consensus 85 nAG 87 (255)
T d1gega_ 85 NAG 87 (255)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.50 E-value=2.3 Score=37.00 Aligned_cols=77 Identities=10% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|..+| +..|++|.+..++..+. ...+|+.+|.+++.++.+.+.+ +- +..++..|..+..... ..++
T Consensus 5 ~gK~al-ITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g 79 (253)
T d1hxha_ 5 QGKVAL-VTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GE-RSMFVRHDVSSEADWTLVMAAVQRRLG 79 (253)
T ss_dssp TTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CT-TEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CC-CeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 366677 55567778888877653 3469999999998887766544 43 4667788887643110 1246
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
..|.++.++.
T Consensus 80 ~iDilVnnAG 89 (253)
T d1hxha_ 80 TLNVLVNNAG 89 (253)
T ss_dssp SCCEEEECCC
T ss_pred CCCeEEeccc
Confidence 7899998774
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=81.16 E-value=1 Score=41.30 Aligned_cols=122 Identities=12% Similarity=0.035 Sum_probs=65.3
Q ss_pred EEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCH-----HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC--CCcc
Q 013515 244 KVLDACSAPGNKTVHLAALM-KGKGKIVACELNK-----ERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY--SEVR 315 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~-----~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~--~~fD 315 (441)
+|| +..|+|..+.++...+ ...-.|+++|... .+++.+...... .-.+++++.+|..+...-...+ ..+|
T Consensus 3 ~vL-ITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 3 VAL-ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp EEE-EETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred EEE-EeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhh-cCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 344 5566799999997766 3346899999843 333333222111 1257889999987644211000 2568
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHH-HHHHHHHHHHHHHHHhCC-C-CCcEEEE-EcCCCC
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMER-LNKLSAFQKKALRHALSF-P-GVERVVY-STCSIH 385 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~-~~~l~~~Q~~lL~~a~~~-~-~~G~lvY-sTCS~~ 385 (441)
.|+-=+-+++.+..- .+++. .......-..+|+.|.+. + +...+|| |||++.
T Consensus 81 ~v~h~aa~~~~~~~~------------------~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vY 136 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSF------------------ESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELY 136 (357)
T ss_dssp EEEECCCCCTTTTTT------------------SCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGG
T ss_pred EEEEeecccccchhh------------------hCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhh
Confidence 998755554433211 12332 334556667888888654 2 3356666 787754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.70 E-value=1.6 Score=35.48 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=38.6
Q ss_pred HhCCCCCCEEEEEcCC--CchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 236 ALAPKPGWKVLDACSA--PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag--~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
..+++||++||=.++| .|..+.+++...+ .+|++++.++++++.++ .+|.+.
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~----~lGa~~ 76 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSAL----KAGAWQ 76 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----HHTCSE
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHH----hcCCeE
Confidence 3567899999977554 3455667777653 69999999999988765 468764
|