Citrus Sinensis ID: 013632

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS
cccccccccEEEcccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccEEEEEEEEEEEccccccHHHHHHcccccccccccccccccccEEEEEccccEEEEEccccccccEEEcEEEEEEEEEcccccEEEEEEEcccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccEEEccccEEEEccEEEEEEccccHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccEEEcccccEEEEcccccccEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEEEEcc
ccccccccccEcccccccccccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEEccccccccHHHHHHHHcccccccccccccccccEEEEEccccEEEEEccccccccEEcEEEEEEEEEEccccEEEEEEEEccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHcccccHHHHHHHHHEEEEEEEcccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccHHHcccHHHcccccEccccEEEEEccEEEEEEccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccEEEccccEEEEEcccccccEEEEEcccccEEEEEEEcccccccEEEEEEcccEEEEEEEEEEEcc
MEIDGEEARLQRKQATyifldepfeiqketyrgqqYSQIYFARLHLMRALLYSlvpnwkphlpictvleleegRECVIIGTLykhmklkpsildeyskersttplvkphnfmhpddhlvledesgrvklggaellpsaYVTGIVVALhgketsageFLVLDVLdaglapqkelplnsgedKYVVLVSGlnvgsgtsnpLQFQLLVDHItghlgdekeqGIAAEIVHVVIAGnsieiprgllngqnlaskdqsrlfePIKELDILLTQIaagvpldimpgpndpanfslpqqplnrclfpgsatyntfrsctnphcfeldnvrflgtsgqtiDDLQKYSEANDQLEFMERTLRwrhlaptapntlgcypftdrdpflvescphvyfagnqqKFETRllkgsdrqLVRLVCIPKFSETGVAVVVNLKnlechtlsfgtqfs
meidgeearlqrkqatyifldepfeiQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGtlykhmklkPSILDEYSKERSttplvkphnfmHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQkelplnsgeDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLechtlsfgtqfs
MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYvvlvsglnvgsgtsnPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS
**************ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD**********************HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMP*********L*QQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG****
***********RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS*********FMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL***************VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF*
*********LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS
********RLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF*
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MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
O48520440 DNA polymerase delta smal yes no 0.997 0.995 0.774 0.0
Q9LRE5429 DNA polymerase delta smal yes no 0.972 0.995 0.727 0.0
O35654469 DNA polymerase delta subu yes no 0.954 0.893 0.434 1e-91
Q6AXY4469 DNA polymerase delta subu yes no 0.954 0.893 0.431 3e-90
P49005469 DNA polymerase delta subu yes no 0.954 0.893 0.429 5e-90
P49004469 DNA polymerase delta subu yes no 0.945 0.884 0.450 1e-89
O93610463 DNA polymerase delta subu N/A no 0.929 0.881 0.438 2e-83
Q9W088431 DNA polymerase delta smal yes no 0.943 0.960 0.380 2e-74
P87324462 DNA polymerase subunit de yes no 0.927 0.880 0.321 4e-58
P46957487 DNA polymerase delta smal yes no 0.911 0.821 0.313 3e-56
>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2 Back     alignment and function desciption
 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/439 (77%), Positives = 389/439 (88%), Gaps = 1/439 (0%)

Query: 1   MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
           MEID E+   +RKQ+ Y  LDE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK 
Sbjct: 1   MEIDSEKIH-ERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKS 59

Query: 61  HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
           HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+L
Sbjct: 60  HLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLIL 119

Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
           EDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++  ED
Sbjct: 120 EDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQED 179

Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
           KYVVL+SGL +GS ++NPLQFQLLVDHITGHLGDE+EQG+AA+IVHVVIAGNS E PR L
Sbjct: 180 KYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKL 239

Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
           +NGQNLASKDQS L+EPIKELDI+L+QIAAGV +DIMPG NDPANF+LPQQPLNRCLFPG
Sbjct: 240 INGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPG 299

Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
           S+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA  +L+F+ERTLRWRHLAPTA
Sbjct: 300 SSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTA 359

Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
           PNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+AV
Sbjct: 360 PNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAV 419

Query: 421 VVNLKNLECHTLSFGTQFS 439
            VNL+NLECHTLSF TQ +
Sbjct: 420 AVNLRNLECHTLSFSTQIN 438
The function of the small subunit is not yet clear.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7
>sp|Q9LRE5|DPOD2_ORYSJ DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1 Back     alignment and function description
>sp|O35654|DPOD2_MOUSE DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=2 Back     alignment and function description
>sp|Q6AXY4|DPOD2_RAT DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1 Back     alignment and function description
>sp|P49005|DPOD2_HUMAN DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1 Back     alignment and function description
>sp|P49004|DPOD2_BOVIN DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2 Back     alignment and function description
>sp|O93610|DPOD2_XENLA DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1 Back     alignment and function description
>sp|Q9W088|DPOD2_DROME DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1 Back     alignment and function description
>sp|P87324|DPOD2_SCHPO DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc1 PE=1 SV=1 Back     alignment and function description
>sp|P46957|DPOD2_YEAST DNA polymerase delta small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
225441449439 PREDICTED: DNA polymerase delta small su 0.997 0.997 0.831 0.0
147776498439 hypothetical protein VITISV_040861 [Viti 0.997 0.997 0.829 0.0
224139798452 predicted protein [Populus trichocarpa] 0.997 0.969 0.796 0.0
255579737425 DNA polymerase delta small subunit, puta 0.956 0.988 0.828 0.0
42571181440 DNA polymerase delta subunit 2 [Arabidop 0.997 0.995 0.774 0.0
42569857441 DNA polymerase delta subunit 2 [Arabidop 0.997 0.993 0.772 0.0
449437575438 PREDICTED: DNA polymerase delta small su 0.997 1.0 0.783 0.0
297827879441 hypothetical protein ARALYDRAFT_483299 [ 0.997 0.993 0.770 0.0
224091621442 predicted protein [Populus trichocarpa] 0.997 0.990 0.804 0.0
2673906456 putative DNA polymerase delta small subu 0.997 0.960 0.745 0.0
>gi|225441449|ref|XP_002279533.1| PREDICTED: DNA polymerase delta small subunit [Vitis vinifera] gi|297739835|emb|CBI30017.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/439 (83%), Positives = 400/439 (91%), Gaps = 1/439 (0%)

Query: 1   MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
           MEID E+  LQRKQ+ Y  LDE F I+KETYRGQQYSQIYFARLH+MR L+YSL+PNWKP
Sbjct: 1   MEIDAEK-HLQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKP 59

Query: 61  HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
           HLP+CTVL LEEG+EC+I+GTLYKHMKLKP ILDEYSKERS  PLVKPHNFMH DD LVL
Sbjct: 60  HLPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVL 119

Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
           EDESGRVKLGG  LLPS YVTG VV LHGKETSAGEFLV D+LDA L PQ ELPL S ED
Sbjct: 120 EDESGRVKLGGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSRED 179

Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
           KYVV VSGL+VGS TSNPLQFQLLVDHITGHLGDEKEQGIAA+IVHVVIAGNS+ +PRGL
Sbjct: 180 KYVVFVSGLSVGSSTSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGL 239

Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
           LNGQNLASKDQSRL EPIKELDILLTQIAAG+PLDIMPGP+DPANFSLPQQPL+RCLFPG
Sbjct: 240 LNGQNLASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPG 299

Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
           S+ YN+FRSCTNPH FEL+N+RFLGTSGQ +DDL+KYSEA D+LEFMERTLRWRHLAPTA
Sbjct: 300 SSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTA 359

Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
           PNTLGCYPFTDRDPFL+ESCPHVYF GNQ K+ETRL+KGS+ Q+VRL+CIPKF ETGVAV
Sbjct: 360 PNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAV 419

Query: 421 VVNLKNLECHTLSFGTQFS 439
           V+N++NLECH LSFGT+FS
Sbjct: 420 VLNMRNLECHALSFGTEFS 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147776498|emb|CAN71889.1| hypothetical protein VITISV_040861 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224139798|ref|XP_002323281.1| predicted protein [Populus trichocarpa] gi|222867911|gb|EEF05042.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579737|ref|XP_002530707.1| DNA polymerase delta small subunit, putative [Ricinus communis] gi|223529721|gb|EEF31661.1| DNA polymerase delta small subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|42571181|ref|NP_973664.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana] gi|322510023|sp|O48520.2|DPOD2_ARATH RecName: Full=DNA polymerase delta small subunit gi|22531160|gb|AAM97084.1| putative DNA polymerase delta small subunit [Arabidopsis thaliana] gi|31376377|gb|AAP49515.1| At2g42120 [Arabidopsis thaliana] gi|62320658|dbj|BAD95325.1| DNA polymerase delta small subunit like protein [Arabidopsis thaliana] gi|330254978|gb|AEC10072.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42569857|ref|NP_181742.2| DNA polymerase delta subunit 2 [Arabidopsis thaliana] gi|330254979|gb|AEC10073.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449437575|ref|XP_004136567.1| PREDICTED: DNA polymerase delta small subunit-like [Cucumis sativus] gi|449526900|ref|XP_004170451.1| PREDICTED: DNA polymerase delta small subunit-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297827879|ref|XP_002881822.1| hypothetical protein ARALYDRAFT_483299 [Arabidopsis lyrata subsp. lyrata] gi|297327661|gb|EFH58081.1| hypothetical protein ARALYDRAFT_483299 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224091621|ref|XP_002309305.1| predicted protein [Populus trichocarpa] gi|222855281|gb|EEE92828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2673906|gb|AAB88640.1| putative DNA polymerase delta small subunit [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2060010441 POLD2 "DNA polymerase delta sm 0.997 0.993 0.752 2e-184
ZFIN|ZDB-GENE-030616-157467 pold2 "polymerase (DNA directe 0.977 0.918 0.430 2.9e-87
MGI|MGI:1097163469 Pold2 "polymerase (DNA directe 0.947 0.886 0.433 1.3e-86
UNIPROTKB|F1SSF8469 POLD2 "Uncharacterized protein 0.945 0.884 0.436 3.3e-86
UNIPROTKB|H9GW60511 POLD2 "Uncharacterized protein 0.952 0.818 0.430 1.1e-85
UNIPROTKB|P49004469 POLD2 "DNA polymerase delta su 0.945 0.884 0.431 1.4e-85
RGD|1304954469 Pold2 "polymerase (DNA directe 0.947 0.886 0.430 2.4e-85
UNIPROTKB|P49005469 POLD2 "DNA polymerase delta su 0.947 0.886 0.430 3.8e-85
UNIPROTKB|F8W8R3455 POLD2 "DNA polymerase delta su 0.915 0.883 0.412 3.9e-76
DICTYBASE|DDB_G0281641521 polD2 "DNA polymerase delta su 0.911 0.767 0.404 3.5e-75
TAIR|locus:2060010 POLD2 "DNA polymerase delta small subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
 Identities = 331/440 (75%), Positives = 376/440 (85%)

Query:     1 MEIDGEEARLQRKQATYIFL-DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWK 59
             MEID E+   +RKQ+ Y  L DE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK
Sbjct:     1 MEIDSEKIH-ERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWK 59

Query:    60 PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLV 119
              HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+
Sbjct:    60 SHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLI 119

Query:   120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE 179
             LEDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++  E
Sbjct:   120 LEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQE 179

Query:   180 DKYXXXXXXXXXXXXXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
             DKY               PLQFQLLVDHITGHLGDE+EQG+AA+IVHVVIAGNS E PR 
Sbjct:   180 DKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRK 239

Query:   240 LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
             L+NGQNLASKDQS L+EPIKELDI+L+QIAAGV +DIMPG NDPANF+LPQQPLNRCLFP
Sbjct:   240 LINGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFP 299

Query:   300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPT 359
             GS+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA  +L+F+ERTLRWRHLAPT
Sbjct:   300 GSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPT 359

Query:   360 APNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVA 419
             APNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+A
Sbjct:   360 APNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIA 419

Query:   420 VVVNLKNLECHTLSFGTQFS 439
             V VNL+NLECHTLSF TQ +
Sbjct:   420 VAVNLRNLECHTLSFSTQIN 439
GO:0003677 "DNA binding" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006260 "DNA replication" evidence=IEA;RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007020 "microtubule nucleation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
ZFIN|ZDB-GENE-030616-157 pold2 "polymerase (DNA directed), delta 2, regulatory subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1097163 Pold2 "polymerase (DNA directed), delta 2, regulatory subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSF8 POLD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H9GW60 POLD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49004 POLD2 "DNA polymerase delta subunit 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304954 Pold2 "polymerase (DNA directed), delta 2, accessory subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P49005 POLD2 "DNA polymerase delta subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W8R3 POLD2 "DNA polymerase delta subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281641 polD2 "DNA polymerase delta subunit 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46957DPOD2_YEAST2, ., 7, ., 7, ., 70.31370.91110.8213yesno
P49005DPOD2_HUMAN2, ., 7, ., 7, ., 70.42950.95440.8933yesno
P49004DPOD2_BOVIN2, ., 7, ., 7, ., 70.45070.94530.8848yesno
Q9LRE5DPOD2_ORYSJ2, ., 7, ., 7, ., 70.72720.97260.9953yesno
P87324DPOD2_SCHPO2, ., 7, ., 7, ., 70.32110.92710.8809yesno
O48520DPOD2_ARATH2, ., 7, ., 7, ., 70.77440.99770.9954yesno
Q9W088DPOD2_DROME2, ., 7, ., 7, ., 70.38010.94300.9605yesno
O35654DPOD2_MOUSE2, ., 7, ., 7, ., 70.43420.95440.8933yesno
Q6AXY4DPOD2_RAT2, ., 7, ., 7, ., 70.43190.95440.8933yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.983
4th Layer2.7.7.70.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
cd07387257 cd07387, MPP_PolD2_C, PolD2 (DNA polymerase delta, 1e-143
pfam04042189 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsil 5e-57
COG1311481 COG1311, HYS2, Archaeal DNA polymerase II, small s 6e-44
PRK04036504 PRK04036, PRK04036, DNA polymerase II small subuni 2e-12
cd07386243 cd07386, MPP_DNA_pol_II_small_archeal_C, archeal D 2e-09
>gnl|CDD|163630 cd07387, MPP_PolD2_C, PolD2 (DNA polymerase delta, subunit 2), C-terminal domain Back     alignment and domain information 
 Score =  409 bits (1053), Expect = e-143
 Identities = 144/257 (56%), Positives = 185/257 (71%), Gaps = 4/257 (1%)

Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLL 241
           Y+ LVSGL +G    + L  QLLVD +TG LGDE+EQ  A+ IV ++IAGNS+       
Sbjct: 1   YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGK 60

Query: 242 NGQNLA----SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
           + Q  A     K  +   E +KELD  L+Q+A+ VP+D+MPG  DPAN SLPQQPL+RCL
Sbjct: 61  DSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCL 120

Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
           FP S+ Y+T    TNP+ F +D VR LGTSGQ +DD+ KYS    +L+ +ERTL+WRH+A
Sbjct: 121 FPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTLKWRHIA 180

Query: 358 PTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETG 417
           PTAP+TL CYPFTDRDPF++E CPHVYFAGNQ KF T+L++G + Q V LVC+P FS+TG
Sbjct: 181 PTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSKTG 240

Query: 418 VAVVVNLKNLECHTLSF 434
            AV+VNL+ LEC  +SF
Sbjct: 241 TAVLVNLRTLECEPISF 257

PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 257
>gnl|CDD|217857 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit B Back     alignment and domain information
>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235208 PRK04036, PRK04036, DNA polymerase II small subunit; Validated Back     alignment and domain information
>gnl|CDD|163629 cd07386, MPP_DNA_pol_II_small_archeal_C, archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
KOG2732435 consensus DNA polymerase delta, regulatory subunit 100.0
cd07387257 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2 100.0
PRK04036504 DNA polymerase II small subunit; Validated 100.0
COG1311481 HYS2 Archaeal DNA polymerase II, small subunit/DNA 100.0
PF04042209 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit 100.0
cd07386243 MPP_DNA_pol_II_small_archeal_C archeal DNA polymer 100.0
KOG3818525 consensus DNA polymerase epsilon, subunit B [Repli 100.0
KOG1625600 consensus DNA polymerase alpha-primase complex, po 99.96
COG5214581 POL12 DNA polymerase alpha-primase complex, polyme 99.93
PTZ00235291 DNA polymerase epsilon subunit B; Provisional 99.9
PRK05340241 UDP-2,3-diacylglucosamine hydrolase; Provisional 99.06
TIGR01854231 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. 98.97
PHA02546340 47 endonuclease subunit; Provisional 98.7
cd07402240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 98.63
PRK09453182 phosphodiesterase; Provisional 98.29
cd07398217 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat 98.23
cd07388224 MPP_Tt1561 Thermus thermophilus Tt1561 and related 98.23
cd07394178 MPP_Vps29 Homo sapiens Vps29 and related proteins, 98.11
PF12850156 Metallophos_2: Calcineurin-like phosphoesterase su 98.09
cd00841155 MPP_YfcE Escherichia coli YfcE and related protein 98.06
PRK11148275 cyclic 3',5'-adenosine monophosphate phosphodieste 98.06
COG2908237 Uncharacterized protein conserved in bacteria [Fun 98.04
TIGR00040158 yfcE phosphoesterase, MJ0936 family. Members of th 98.01
cd07399214 MPP_YvnB Bacillus subtilis YvnB and related protei 97.96
cd07401256 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal 97.91
TIGR00619253 sbcd exonuclease SbcD. This family is based on the 97.9
cd08163257 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related 97.88
PRK10966 407 exonuclease subunit SbcD; Provisional 97.82
cd07395262 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, 97.81
cd07384171 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re 97.74
cd07400144 MPP_YydB Bacillus subtilis YydB and related protei 97.67
cd08165156 MPP_MPPE1 human MPPE1 and related proteins, metall 97.56
cd00840223 MPP_Mre11_N Mre11 nuclease, N-terminal metallophos 97.51
PRK11340271 phosphodiesterase YaeI; Provisional 97.5
COG0420 390 SbcD DNA repair exonuclease [DNA replication, reco 97.49
cd07379135 MPP_239FB Homo sapiens 239FB and related proteins, 97.41
cd07391172 MPP_PF1019 Pyrococcus furiosus PF1019 and related 97.37
PF14582255 Metallophos_3: Metallophosphoesterase, calcineurin 97.36
cd07385223 MPP_YkuE_C Bacillus subtilis YkuE and related prot 97.36
cd07390168 MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro 97.32
cd07404166 MPP_MS158 Microscilla MS158 and related proteins, 97.27
cd07383199 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase 97.24
COG1409301 Icc Predicted phosphohydrolases [General function 97.19
TIGR03729239 acc_ester putative phosphoesterase. Members of thi 97.19
cd00839294 MPP_PAPs purple acid phosphatases of the metalloph 97.16
COG0622172 Predicted phosphoesterase [General function predic 97.11
TIGR00583 405 mre11 DNA repair protein (mre11). All proteins in 97.08
cd07396267 MPP_Nbla03831 Homo sapiens Nbla03831 and related p 97.03
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 96.96
TIGR00024225 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11 96.89
COG1311481 HYS2 Archaeal DNA polymerase II, small subunit/DNA 96.84
cd07392188 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel 96.71
cd0449079 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds 96.59
cd07393232 MPP_DR1119 Deinococcus radiodurans DR1119 and rela 96.53
COG2129226 Predicted phosphoesterases, related to the Icc pro 96.43
PLN02533427 probable purple acid phosphatase 96.11
COG1407235 Predicted ICC-like phosphoesterases [General funct 96.08
cd08166195 MPP_Cdc1_like_1 uncharacterized subgroup related t 95.5
PHA02239235 putative protein phosphatase 95.11
cd00838131 MPP_superfamily metallophosphatase superfamily, me 94.84
cd00844262 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t 94.28
COG4186186 Predicted phosphoesterase or phosphohydrolase [Gen 93.75
cd07424207 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do 92.86
COG1408284 Predicted phosphohydrolases [General function pred 92.69
cd07403129 MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel 92.04
PF04076103 BOF: Bacterial OB fold (BOF) protein; InterPro: IP 90.46
PF03100131 CcmE: CcmE; InterPro: IPR004329 CcmE is the produc 89.21
PRK00166275 apaH diadenosine tetraphosphatase; Reviewed 89.07
cd07397238 MPP_DevT Myxococcus xanthus DevT and related prote 88.93
cd08164193 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related 88.81
TIGR00156126 conserved hypothetical protein TIGR00156. As of th 88.62
cd07378277 MPP_ACP5 Homo sapiens acid phosphatase 5 and relat 88.5
KOG3662 410 consensus Cell division control protein/predicted 88.34
PRK13254148 cytochrome c-type biogenesis protein CcmE; Reviewe 87.39
cd00842296 MPP_ASMase acid sphingomyelinase and related prote 86.48
cd00144225 MPP_PPP_family phosphoprotein phosphatases of the 84.08
cd04479101 RPA3 RPA3: A subfamily of OB folds similar to huma 82.47
PRK06461129 single-stranded DNA-binding protein; Reviewed 81.81
PRK10053130 hypothetical protein; Provisional 81.69
cd07425208 MPP_Shelphs Shewanella-like phosphatases, metallop 80.35
PRK11439218 pphA serine/threonine protein phosphatase 1; Provi 80.14
>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-118  Score=881.85  Aligned_cols=423  Identities=48%  Similarity=0.818  Sum_probs=396.3

Q ss_pred             cccceeeeccCCCCceecCCCCCchhhHHHHHHHHHHHHHHHHccccCCCCC-CCccceecccCCC-eEEEEEEEEecCC
Q 013632           10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPH-LPICTVLELEEGR-ECVIIGTLYKHMK   87 (439)
Q Consensus        10 ~~r~~~~y~~~~~~f~l~~~~y~~~Qy~~iY~~Rl~~lr~~l~~~a~~k~~~-~~v~~l~~~~~~~-~~~viGtl~k~~~   87 (439)
                      ..+....|.|.|++|+|.+++| .+||+++|++||+.||++|.+.|++||+. .++.++++++.++ +|+||||+||.|+
T Consensus         4 ~r~~~~~~~n~s~~f~L~~~~y-~~Qy~~iY~aRL~elRp~i~~~A~k~wg~~~~l~~~l~l~~~~~~C~vVGTlfk~~~   82 (435)
T KOG2732|consen    4 VRSLILNYENKSDRFRLSEKDY-SRQYFHIYFARLKELRPRILELAQKKWGSGPPLKKQLDLEKGKGECWVVGTLFKAMA   82 (435)
T ss_pred             eeeccccccccccceeeccchh-HHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchhhheeeccCCccEEEEEehhhhcc
Confidence            3445568999999999999999 99999999999999999999999999985 6789999999888 9999999999999


Q ss_pred             CCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEeeCCC
Q 013632           88 LKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL  167 (439)
Q Consensus        88 lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~~P~~  167 (439)
                      +|||||+|+++|+++++++++.+|.+.+|+|+|||++|||+|.|+.+....++||+||||.|++.+.|.|.|+|+|||++
T Consensus        83 lKPsIl~~v~~e~~~~p~~~~~~y~~ped~i~LEDe~grV~L~G~~i~~~~~vTGvvvavlG~~~e~G~F~VeDv~fp~~  162 (435)
T KOG2732|consen   83 LKPSILDEVSNEHKVAPDPEESNYHSPEDEIVLEDESGRVRLEGSFISHAVLVTGVVVAVLGKEAEAGRFLVEDVLFPGS  162 (435)
T ss_pred             cCcHHHHHHhhhhccCCCCcccccCCccceEEEecCCceEEEEeecccccceeeeEEEEEecccccCceEEEEEEeccCC
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcc
Q 013632          168 APQ-KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL  246 (439)
Q Consensus       168 ~~~-~~~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~  246 (439)
                      .|| .+++... ++++|||+|||.+|+...+..++++|+|||+|.+|++.++ .++.|+|+|||||+++..+++...+..
T Consensus       163 ~pq~~P~~~~~-~~~~i~lVSGL~l~~~~~~~~~l~~l~D~l~g~lg~e~~~-~~~~i~rliv~Gn~l~~~~~~~~~~~~  240 (435)
T KOG2732|consen  163 SPQGKPRATLP-SQRKIALVSGLDLGGGSKNLLRLELLVDWLRGQLGNEYEQ-SASSIGRLIVAGNSLSFSIKILDSQST  240 (435)
T ss_pred             CccCCCCCcCC-CCCEEEEEeccccCCCcchhHHHHHHHHHHhcccCccccc-cccccceEEEeccccchhhhcccccee
Confidence            999 4444443 5689999999999998878899999999999999999888 789999999999999877665544422


Q ss_pred             -----cccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCc-CCCceeecCCcEEEeCC
Q 013632          247 -----ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT-YNTFRSCTNPHCFELDN  320 (439)
Q Consensus       247 -----~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~-~~~~~~~tNP~~~~i~g  320 (439)
                           ..+++.....+++++|.+|++++.+++|++|||..||++.+|||||||+|+||.+.. +++++.+||||+|++||
T Consensus       241 ~~~~~~~~~~~~~~~~v~~ld~~L~~~~~s~~VdimPG~~Dp~~~~lPqqPlh~~lfp~s~~~~~~~q~vTNPy~~~ld~  320 (435)
T KOG2732|consen  241 SISRLTKKDSAASVIPVKELDNFLAQIPASISVDIMPGVNDPSNFMLPQQPLHRCLFPKSPQSLSTLQLVTNPYEFSLDG  320 (435)
T ss_pred             eeeeccccccccccccHHHHHHHHHhccccCCccCCCCCCChhhccCCcCCcchhhhccCccccchhhcccCceEEEEcC
Confidence                 234556667899999999999999999999999999999999999999999999977 89999999999999999


Q ss_pred             EEEEEecCCChHHHhhccCcCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecC
Q 013632          321 VRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS  400 (439)
Q Consensus       321 ~~~l~~sGq~i~di~k~~~~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~  400 (439)
                      .+|+++|||||+|++||++.++.+++||++|+|||+|||||||||||||.++|||||++|||||+|||||+|+++.++++
T Consensus       321 ~~vl~tSGqNvsDl~ry~~~~s~ld~le~tlkw~HvaPTaPDTL~cyPftekDPFv~~~~Phvy~~GNqp~f~~r~i~~~  400 (435)
T KOG2732|consen  321 ARVLGTSGQNVSDLLRYSSKKSGLDALENTLKWGHVAPTAPDTLWCYPFTEKDPFVMDECPHVYIVGNQPKFGTRLIEGG  400 (435)
T ss_pred             EEEEecCCccHHHHhhhcchhhHHHHHhhhheeccccCCCCCcccccccccCCCeeecCCCeEEEecCCCcccceeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEeee
Q 013632          401 DRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT  436 (439)
Q Consensus       401 ~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f~~  436 (439)
                       |+.|+|||||+||+||.+|+|||+||+|++++|+.
T Consensus       401 -g~~~~Lv~VP~FskT~~~vllnL~tL~~~~v~Fd~  435 (435)
T KOG2732|consen  401 -GKNTLLVCVPKFSKTGVAVLLNLETLACETVNFDM  435 (435)
T ss_pred             -CceEEEEEcccccccceEEEEEcccccceeEeccC
Confidence             89999999999999999999999999999999973

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain Back     alignment and domain information
>PRK04036 DNA polymerase II small subunit; Validated Back     alignment and domain information
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast Back     alignment and domain information
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain Back     alignment and domain information
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair] Back     alignment and domain information
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair] Back     alignment and domain information
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00235 DNA polymerase epsilon subunit B; Provisional Back     alignment and domain information
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional Back     alignment and domain information
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase Back     alignment and domain information
>PHA02546 47 endonuclease subunit; Provisional Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK09453 phosphodiesterase; Provisional Back     alignment and domain information
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain Back     alignment and domain information
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [] Back     alignment and domain information
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional Back     alignment and domain information
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR00040 yfcE phosphoesterase, MJ0936 family Back     alignment and domain information
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain Back     alignment and domain information
>TIGR00619 sbcd exonuclease SbcD Back     alignment and domain information
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK10966 exonuclease subunit SbcD; Provisional Back     alignment and domain information
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information
>PRK11340 phosphodiesterase YaeI; Provisional Back     alignment and domain information
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain Back     alignment and domain information
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A Back     alignment and domain information
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1409 Icc Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>TIGR03729 acc_ester putative phosphoesterase Back     alignment and domain information
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>COG0622 Predicted phosphoesterase [General function prediction only] Back     alignment and domain information
>TIGR00583 mre11 DNA repair protein (mre11) Back     alignment and domain information
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related Back     alignment and domain information
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit Back     alignment and domain information
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only] Back     alignment and domain information
>PLN02533 probable purple acid phosphatase Back     alignment and domain information
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only] Back     alignment and domain information
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain Back     alignment and domain information
>PHA02239 putative protein phosphatase Back     alignment and domain information
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain Back     alignment and domain information
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only] Back     alignment and domain information
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain Back     alignment and domain information
>COG1408 Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain Back     alignment and domain information
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) Back     alignment and domain information
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria Back     alignment and domain information
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed Back     alignment and domain information
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain Back     alignment and domain information
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR00156 conserved hypothetical protein TIGR00156 Back     alignment and domain information
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed Back     alignment and domain information
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PRK10053 hypothetical protein; Provisional Back     alignment and domain information
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain Back     alignment and domain information
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
3e0j_A476 X-Ray Structure Of The Complex Of Regulatory Subuni 9e-91
>pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of Human Dna Polymerase Delta Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 181/426 (42%), Positives = 251/426 (58%), Gaps = 7/426 (1%)
Query: 15  ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
           ATY    +PF + + ++  +QY+ IY  RL  MR  L +    +W   + +  + EL+  
Sbjct: 37  ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 95
Query: 74  RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
            +C ++GTL+K M L+PSIL E S+E +  P      ++HPDD LVLEDE  R+KL G  
Sbjct: 96  EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 154
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXX 193
           +  S  VTG V+A+ G     G+FLV D   A LAPQK  P    +              
Sbjct: 155 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 214
Query: 194 XXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
                L  QLLVD +TG LGDE EQ  AA +  V++AGN    S +    +   + L  K
Sbjct: 215 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 274
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
            Q+   E +K LD +L Q++A VP+D+MPG  DP N++LPQQPL+ C+FP +  Y+T + 
Sbjct: 275 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 334
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
            TNP+   +D VRFLGTSGQ + D+ +YS   D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 335 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 394
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
              DPF+   CPHVYF GN   F +++++G + Q V LV +P FS T  A +VNL++L C
Sbjct: 395 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 454
Query: 430 HTLSFG 435
             +SF 
Sbjct: 455 QPISFS 460

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
3e0j_A476 DNA polymerase subunit delta-2; DNA polymerase del 1e-165
3flo_A460 DNA polymerase alpha subunit B; protein-protein co 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} Length = 476 Back     alignment and structure
 Score =  473 bits (1219), Expect = e-165
 Identities = 189/439 (43%), Positives = 263/439 (59%), Gaps = 9/439 (2%)

Query: 4   DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHL 62
                  +   ATY    +PF + + ++  +QY+ IY  RL  MR  L +     W   +
Sbjct: 26  ANNATFARVPVATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGV 84

Query: 63  PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED 122
            +  + EL+   +C ++GTL+K M L+PSIL E S+E +  P      ++HPDD LVLED
Sbjct: 85  GVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLED 144

Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY 182
           E  R+KL G  +  S  VTG V+A+ G     G+FLV D   A LAPQK  P     D++
Sbjct: 145 ELQRIKLKG-TIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAP-PLDTDRF 202

Query: 183 VVLVSGLNVGSGT-SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI----P 237
           V+LVSGL +G G   + L  QLLVD +TG LGDE EQ  AA +  V++AGN +       
Sbjct: 203 VLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSR 262

Query: 238 RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
             +   + L  K Q+   E +K LD +L Q++A VP+D+MPG  DP N++LPQQPL+ C+
Sbjct: 263 DSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCM 322

Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
           FP +  Y+T +  TNP+   +D VRFLGTSGQ + D+ +YS   D LE +E TLR RH++
Sbjct: 323 FPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHIS 382

Query: 358 PTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETG 417
           PTAP+TLGCYPF   DPF+   CPHVYF GN   F +++++G + Q V LV +P FS T 
Sbjct: 383 PTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQ 442

Query: 418 VAVVVNLKNLECHTLSFGT 436
            A +VNL++L C  +SF  
Sbjct: 443 TACLVNLRSLACQPISFSG 461
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 460 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
3e0j_A476 DNA polymerase subunit delta-2; DNA polymerase del 100.0
3flo_A460 DNA polymerase alpha subunit B; protein-protein co 100.0
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, 98.6
3ib7_A330 ICC protein; metallophosphoesterase, alpha-beta fo 98.57
1z2w_A192 Vacuolar protein sorting 29; VPS29, retromer, phos 98.23
1s3l_A190 Hypothetical protein MJ0936; phosphodiesterase, nu 98.2
2a22_A215 Vacuolar protein sorting 29; alpha-beta-BETA-alpha 98.15
2nxf_A322 Putative dimetal phosphatase; dinuclear metal cent 98.09
1uf3_A228 Hypothetical protein TT1561; metallo-dependent pho 98.08
3tho_B 379 Exonuclease, putative; adenosine triphosphate, bac 98.06
3av0_A 386 DNA double-strand break repair protein MRE11; DNA 98.06
1nnw_A252 Hypothetical protein; structural genomics, PSI, pr 98.01
1su1_A208 Hypothetical protein YFCE; structural genomics, ph 97.97
2kkn_A178 Uncharacterized protein; protein phosphatase 2A ho 97.91
2xmo_A 443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 97.84
3ck2_A176 Conserved uncharacterized protein (predicted phosp 97.74
2q8u_A336 Exonuclease, putative; structural genomics, joint 97.67
1ii7_A333 MRE11 nuclease; RAD50, DNA double-strand break rep 97.59
3rl5_A296 Metallophosphoesterase mpped2; alpha-beta fold, me 97.59
3qfm_A270 SAPH, putative uncharacterized protein; sandwich f 97.52
3t1i_A 431 Double-strand break repair protein MRE11A; DNA rep 97.46
1xm7_A195 Hypothetical protein AQ_1665; structural genomics, 97.31
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metall 97.3
4fbw_A 417 DNA repair protein RAD32; DNA double-strand break 97.21
4fbk_A 472 DNA repair and telomere maintenance protein NBS1, 97.2
1xzw_A426 Purple acid phosphatase; hydrolase; HET: NAG FUC M 95.9
1ute_A313 Protein (II purple acid phosphatase); tartrate res 93.88
3rqz_A246 Metallophosphoesterase; PSI-biology, midwest cente 92.55
3dm3_A105 Replication factor A; probably plays AN essential 92.03
2qfp_A424 Purple acid phosphatase; binuclear, Fe-Zn, hydrola 91.93
2qjc_A262 Diadenosine tetraphosphatase, putative; putative d 91.34
1g5b_A221 Serine/threonine protein phosphatase; bacteriophag 91.21
2k50_A115 Replication factor A related protein; uncharacteri 90.98
2kbn_A109 Conserved protein; nucleic acid binding protein, b 90.38
3e0e_A97 Replication protein A; structural genomics, PSI-2, 90.32
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 89.41
1nnx_A109 Protein YGIW; structural genomics, hypothetical pr 87.74
2kct_A94 Cytochrome C-type biogenesis protein CCME; solutio 85.94
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 84.84
2dfj_A280 Diadenosinetetraphosphatase; helices and strands m 83.65
1j6q_A136 Cytochrome C maturation protein E; all-beta protei 80.14
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-124  Score=973.32  Aligned_cols=426  Identities=45%  Similarity=0.752  Sum_probs=358.1

Q ss_pred             ccccccce-eeeccCCCCceecCCCCCchhhHHHHHHHHHHHHHHHHccccCCCCC-CCccceecccCCCeEEEEEEEEe
Q 013632            7 EARLQRKQ-ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPH-LPICTVLELEEGRECVIIGTLYK   84 (439)
Q Consensus         7 ~~~~~r~~-~~y~~~~~~f~l~~~~y~~~Qy~~iY~~Rl~~lr~~l~~~a~~k~~~-~~v~~l~~~~~~~~~~viGtl~k   84 (439)
                      ...++|.. +.|++++++|.+.+|+| ++||++||++||++||+++.++|++||++ .++.+|+++++|++|+|||||||
T Consensus        28 ~~~~~R~~~~~y~~~~~~F~l~~~~y-~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~klldl~~ge~c~viGTvyk  106 (476)
T 3e0j_A           28 NATFARVPVATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFK  106 (476)
T ss_dssp             CCCEECCCTTCEEECCGGGCC-------------CHHHHHHHHHHHHHHHHHHSCSCCCBCCSSSCCTTCCEEEEEEEEE
T ss_pred             ccccccccCccccccccccccCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHhhcccCCCEEEEEEEEEe
Confidence            34789999 99999999999999999 99999999999999999999999999994 89999999999999999999999


Q ss_pred             cCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEee
Q 013632           85 HMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLD  164 (439)
Q Consensus        85 ~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~~  164 (439)
                      +|+||||||+||++|+++.+++++.+|++++|+++|||++|||+|.| .++...||||+||||+|+++++|.|+|+||+|
T Consensus       107 ~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDesGRv~L~g-~~~~~~lVTG~VvaV~G~~~~~G~F~V~di~~  185 (476)
T 3e0j_A          107 AMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKG-TIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCF  185 (476)
T ss_dssp             EC----------------------CCCCCSSCEEEEECSSCEEEEEE-SCCTTTCCTTCEEEEEEEECTTSSEEEEEEEE
T ss_pred             cccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECCCCEEEEEE-EcccccccCCcEEEEEEEEcCCCeEEEEEEEc
Confidence            99999999999999999999999999999999999999999999999 46889999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCC-ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCC
Q 013632          165 AGLAPQKELPLNSGEDKYVVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG  243 (439)
Q Consensus       165 P~~~~~~~~~~~~~~~~~i~~vSgl~lgs~~~-~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~  243 (439)
                      |++|||++++... ++.|||||||||+|++++ +.++|++|+|||+|++|++++++.+++|+|||||||++++. +....
T Consensus       186 Pd~ppq~~~~~~~-~~~~ialVSGL~igs~~~~~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~-~~~~e  263 (476)
T 3e0j_A          186 ADLAPQKPAPPLD-TDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHS-TQSRD  263 (476)
T ss_dssp             CBCCCCCCCCCCS-SCCEEEEECCCCBTSSCHHHHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC-------
T ss_pred             CCCCCCCCCCcCC-CCCEEEEECCcccCCCcccchHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccc-cccch
Confidence            9999998877555 789999999999999864 48899999999999999999899999999999999999874 21110


Q ss_pred             Cc-----ccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEe
Q 013632          244 QN-----LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFEL  318 (439)
Q Consensus       244 ~~-----~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i  318 (439)
                      ..     ...+......+++++||+||++|+++|+|+||||+|||++.+|||||||+|+||++++|++++++||||+|++
T Consensus       264 ~~~~~~y~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~lmPG~~DP~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i  343 (476)
T 3e0j_A          264 SINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATI  343 (476)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEECCTTSSSCSSSSCCCCCTTSCHHHHTSTTEEECCSSEEEEE
T ss_pred             hhhhhhccccccchhhHHHHHHHHHHHHhcccCceEEecCCCCCcccccCCCCCcCHHHhhhhhhcCccEEeCCCeEEEE
Confidence            00     0112233456899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCChHHHhhccCcCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEe
Q 013632          319 DNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK  398 (439)
Q Consensus       319 ~g~~~l~~sGq~i~di~k~~~~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~  398 (439)
                      +|++|||||||||+||+||++.++++++|+.+|+|||+|||||||||||||.++|||||+++|||||+||||+|++++++
T Consensus       344 ~G~~~LgtsGqnidDi~ky~~~~~~l~~me~~LkwrHlAPTaPdTl~~yP~~~~DpfVi~~~PhVyf~Gnq~~f~t~~~~  423 (476)
T 3e0j_A          344 DGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIR  423 (476)
T ss_dssp             TTEEEEECSSHHHHHHHHHSCCCCHHHHHHHHHHBTCSCTTSCCC------CCSCTTSCSSCCSEEEEEEESSCEEEEEE
T ss_pred             CCEEEEEECCCCHHHHHhcCCCCCHHHHHHHHHHHhccCCCCCCceeeccCCCCCceeecCCCcEEEeCCCCccceeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEeee
Q 013632          399 GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT  436 (439)
Q Consensus       399 ~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f~~  436 (439)
                      ++++++|||||||+|++||++|||||+||+|++|+|+.
T Consensus       424 ~~~~~~vrLv~VP~Fs~T~~~vLvdl~tLe~~~v~f~~  461 (476)
T 3e0j_A          424 GPEDQTVLLVTVPDFSATQTACLVNLRSLACQPISFSG  461 (476)
T ss_dssp             CSSCCEEEEEEEECHHHHCEEEEEETTTTBCCEEEEEE
T ss_pred             cCCCCeEEEEEcCCcCCCCeEEEEECccccEEEEEEec
Confidence            98899999999999999999999999999999999986
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A Back     alignment and structure
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Back     alignment and structure
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Back     alignment and structure
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Back     alignment and structure
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C Back     alignment and structure
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A* Back     alignment and structure
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Back     alignment and structure
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Back     alignment and structure
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Back     alignment and structure
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Back     alignment and structure
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7 Back     alignment and structure
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A Back     alignment and structure
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Back     alignment and structure
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A* Back     alignment and structure
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A* Back     alignment and structure
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens} Back     alignment and structure
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8 Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B* Back     alignment and structure
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A* Back     alignment and structure
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 Back     alignment and structure
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Back     alignment and structure
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0 Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A* Back     alignment and structure
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei} Back     alignment and structure
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3 Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 Back     alignment and structure
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str} Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A} Back     alignment and structure
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d2yvta1257 Uncharacterized protein Aq_1956 {Aquifex aeolicus 98.75
d3d03a1271 Glycerophosphodiesterase GpdQ {Enterobacter aeroge 98.64
d1nnwa_251 Hypothetical protein PF1291 {Archaeon Pyrococcus f 98.31
d2a22a1193 Vacuolar protein sorting 29, VPS29 {Cryptosporidiu 98.27
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 98.24
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus j 98.13
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 98.08
d1z2wa1182 Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus 97.91
d2nxfa1320 Uncharacterized C17orf48 homolog zgc:64213 {Zebraf 97.87
d1ii7a_333 Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 97.85
d1su1a_184 Phosphodiesterase yfcE {Escherichia coli [TaxId: 5 97.76
d3ck2a1173 Uncharacterized protein SP1879 {Streptococcus pneu 97.45
d1xm7a_188 Hypothetical protein aq_1666 {Aquifex aeolicus [Ta 96.88
d2qfra2312 Plant purple acid phosphatase, catalytic domain {K 96.01
d1nnxa_106 Hypothetical protein YgiW {Escherichia coli [TaxId 89.91
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 87.08
d1j6qa_100 Heme chaperone CcmE {Shewanella putrefaciens [TaxI 82.24
d1g5ba_219 lambda ser/thr protein phosphatase {Bacteriophage 82.07
d1sr3a_114 Heme chaperone CcmE {Escherichia coli [TaxId: 562] 80.05
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Uncharacterized protein Aq 1956
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.75  E-value=2.7e-08  Score=90.42  Aligned_cols=227  Identities=15%  Similarity=0.131  Sum_probs=115.7

Q ss_pred             CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCC------cccccchhh
Q 013632          180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ------NLASKDQSR  253 (439)
Q Consensus       180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~------~~~~~~~~~  253 (439)
                      +.+|+++||+|-     ....++.|.+.+..           .+|+.||+|||+++.......-+      ......+-.
T Consensus         2 ~~ri~~isD~h~-----~~~~l~~l~~~~~~-----------~~~D~vli~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (257)
T d2yvta1           2 PRKVLAIKNFKE-----RFDLLPKLKGVIAE-----------KQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIH   65 (257)
T ss_dssp             CCEEEEEECCTT-----CGGGHHHHHHHHHH-----------HCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHH
T ss_pred             CcEEEEEeCCCC-----CHHHHHHHHHHHhh-----------cCCCEEEEecccCCCCCCCHHHHHHHHhhhhhceeeec
Confidence            468999999994     24578889988764           56899999999997531100000      000000000


Q ss_pred             h--hHhHHHHHHHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCC
Q 013632          254 L--FEPIKELDILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQT  330 (439)
Q Consensus       254 ~--~~~~~~ld~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~  330 (439)
                      .  ..-+..++.++..+.. .++|.++|||||.....     .....+.....+........-.....++..|.+.++..
T Consensus        66 ~~~n~d~~~~~~~~~~L~~~~~pv~~i~GNHD~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (257)
T d2yvta1          66 ENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKI-----FLRAAYEAETAYPNIRVLHEGFAGWRGEFEVIGFGGLL  140 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSCCHHH-----HHHHHHHTTTTCTTEEECSSEEEEETTTEEEEEECSEE
T ss_pred             cccccchhhHHHHHHHHHhcCCcEEEEeCCCcchhhH-----HHHHhccccccccccccccceeEEecCCeEEEEecccc
Confidence            0  1224566667777644 68999999999975210     00011111011111222222223334667777776542


Q ss_pred             hHHHhhccCc--CC--HHHHHHHHHh---------ccccccCCC--CCcccCCCCCCCCeee-----cCCCcEEEeCCcC
Q 013632          331 IDDLQKYSEA--ND--QLEFMERTLR---------WRHLAPTAP--NTLGCYPFTDRDPFLV-----ESCPHVYFAGNQQ  390 (439)
Q Consensus       331 i~di~k~~~~--~~--~l~~~~~~L~---------~rHlaPt~P--dtl~~~P~~~~Dpfvi-----~~~P~V~~~Gn~~  390 (439)
                      ..........  ..  ..+..+..+.         ..|..|...  +..+.. ......-.+     +.-|+++++||.|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~pp~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~~GHiH  219 (257)
T d2yvta1         141 TEHEFEEDFVLKYPRWYVEYILKFVNELKPRRLVTIFYTPPIGEFVDRTPED-PKHHGSAVVNTIIKSLNPEVAIVGHVG  219 (257)
T ss_dssp             ESSCCBSSSSCEEEHHHHHHHGGGGGGSCCCEEEEEESSCCSCSSTTCBTTB-SCCCSCHHHHHHHHHHCCSEEEECSSC
T ss_pred             CCccccchhhhhhhhhHHHHHHHHhhhcccccEEEEEccccccccccccccc-hhhhhhHHHHHhhhhcCCcEEEEEeec
Confidence            2111110000  00  1111222211         234444321  111110 001112111     2368999999999


Q ss_pred             ccceEEEecCCCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEee
Q 013632          391 KFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG  435 (439)
Q Consensus       391 ~f~~~~~~~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f~  435 (439)
                      +- ....     ..+.+++..++.+ |.-+++|+++-..+.-.|+
T Consensus       220 ~~-~~~~-----g~~~~~~pGs~~~-g~y~~id~~~~~i~~~~~~  257 (257)
T d2yvta1         220 KG-HELV-----GNTIVVNPGEFEE-GRYAFLDLTQHKIKLEQFS  257 (257)
T ss_dssp             CE-EEEE-----TTEEEEECCBGGG-TEEEEEETTTTEEEEEECC
T ss_pred             CC-eEec-----CCeEEEECCcccc-CEEEEEEEeCCEEEEEECC
Confidence            73 2222     2556888778765 4567999999888877764
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens [TaxId: 24]} Back     information, alignment and structure
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]} Back     information, alignment and structure
>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure