Citrus Sinensis ID: 014009

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--

MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTDE

cHHHHHHHHHccccEEEEEcccccccccccccccEEEHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccEEEcccccccccccEEEEEccccccccEEEEEcccccEEEEcccccccHHHHHHHHHcccccccccEEEEEccccccccccccccHHHHHHHHccccccEEEEccccccccccccccccccccccccccEEEEEcccEEEEEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccc

cccHHHHHHHccccEEEEEccccccccccccEEEEEEHHHHHHHHccccccHHHHHHHHHHccccccccccHHcHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccHcccccccccHHHHHHHcccHHHHHHHHHHcccccccEEEEccHHHHHHHHccccccccccEEEEccccccccccEEEEEccccccccEEEEEcccccEEEcccEEEccHHHHHHHHHccccEccccEEEEEEcccccccccHHHccccHHHEcccccccEEEEEccccccccccEEEEcccccHcccccEEEEEcccEEEEEccccEEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEccc

mpgtimamgrlnrpgimvyggtikpghfqghtYDIVSAFQVYGEyvsgsisdeQRMNVVlnscpgagacggmytANTMASAIEAMGmslpysssipaedplkldECRLAGKYLLELLRMdlkprdiitKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFqkvsdevpfladlkpsgkyvMEDVHKIGGTPAVIRYLLELgfldgdcmtvtgktlaenaktfphlsegqdiirplsnpikktghiqvlrgnlapegsvakitgkeglyfsgpalvfegEESMIAAisedpmsfkGKVVVIrgegpkggpgmpemltptsaimgagLGKEVALLtdgrfsggshgfvvghvcpeaqdggpigliqngdiinidvqkrridvqltDEEMEErrrkwtpppnkvnrgVLYKYIKNVqsasngcvtde

MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLEllrmdlkprdiitkKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAktfphlsegqdiIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIqngdiinidvqkrridvqltdeemeerrrkwtpppnkvnrgvLYKYIknvqsasngcvtde

MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRgegpkggpgmpemLTPTSAIMGAGLGKEVALLTDGRfsggshgfvvghvCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTDE

*******MGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPY********PLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIR******************AIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQL******************VNRGVLYKYIKNV***********

*PGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQS*********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		432	2.2.26 [Sep-21-2011]
Q7UJ69		567	Dihydroxy-acid dehydratas	yes	no	0.997	0.760	0.666	1e-172
B2SH83		560	Dihydroxy-acid dehydratas	yes	no	0.995	0.767	0.612	1e-156
A4IYA1		560	Dihydroxy-acid dehydratas	yes	no	0.995	0.767	0.610	1e-155
A0Q6R5		560	Dihydroxy-acid dehydratas	yes	no	0.995	0.767	0.619	1e-153
B0TZC0		560	Dihydroxy-acid dehydratas	yes	no	0.995	0.767	0.617	1e-153
A6GWT7		558	Dihydroxy-acid dehydratas	yes	no	0.997	0.772	0.597	1e-152
Q5NH32		551	Dihydroxy-acid dehydratas	yes	no	0.979	0.767	0.603	1e-151
Q14II4		551	Dihydroxy-acid dehydratas	yes	no	0.979	0.767	0.603	1e-151
Q11NN5		562	Dihydroxy-acid dehydratas	yes	no	0.995	0.765	0.580	1e-148
Q10318		598	Putative dihydroxy-acid d	yes	no	0.995	0.719	0.614	1e-146

>sp\|Q7UJ69\|ILVD_RHOBA Dihydroxy-acid dehydratase OS=Rhodopirellula baltica (strain SH1) GN=ilvD PE=3 SV=2	Back alignment and function desciption

 Score =  603 bits (1556), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/432 (66%), Positives = 351/432 (81%), Gaps = 1/432 (0%)

Query: 1   MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 60
           MPG +MAMGRLNRP IMVYGGTIKPG ++    DIVSAFQ YG++++G IS+E+R  +V 
Sbjct: 137 MPGCLMAMGRLNRPSIMVYGGTIKPGSYRDEKLDIVSAFQCYGQFIAGQISEEERSEIVR 196

Query: 61  NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
            SCPGAGACGGMYTANTMA+AIEA+GM+LPYS+SIPAE P K +EC+ AG  +LELL+ D
Sbjct: 197 RSCPGAGACGGMYTANTMATAIEALGMALPYSASIPAEHPEKKEECKRAGLAILELLKKD 256

Query: 121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
           +KPRDI+T+ +  +AMV +MALGGSTNAVLHLIA+ARSV + L+I++FQ VSD  PFLAD
Sbjct: 257 IKPRDIMTRGAFEDAMVTLMALGGSTNAVLHLIAMARSVDVPLTIEDFQSVSDRTPFLAD 316

Query: 181 LKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240
           LKPSGK+V ED+H +GGTPAV++YLLE G + G+ MTVTGKTLAEN    P L  GQ I+
Sbjct: 317 LKPSGKFVQEDLHSVGGTPAVMKYLLEKGMIKGEHMTVTGKTLAENLADLPGLKTGQKIV 376

Query: 241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMS 300
             +  PIKK+GHI++L+G+LA EG+VAKITGKEGL FSGPA V++ EE M+AA+ +  + 
Sbjct: 377 STVEEPIKKSGHIRILKGSLATEGAVAKITGKEGLQFSGPARVYDNEELMLAALEQKQIQ 436

Query: 301 FKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCP 360
            KG VVVIR EGPKGGPGMPEMLTPTSAIMGAGLG +VA+LTDGRFSGGSHGF+VGH+ P
Sbjct: 437 -KGDVVVIRYEGPKGGPGMPEMLTPTSAIMGAGLGSDVAMLTDGRFSGGSHGFIVGHITP 495

Query: 361 EAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKN 420
           EAQ GGPI LI++GD I ID +   +D+++   E+E RR KWT PP K  RG LYKYIK 
Sbjct: 496 EAQVGGPIALIEDGDTITIDAETNSLDLEVDAAELEARRSKWTAPPLKATRGTLYKYIKC 555

Query: 421 VQSASNGCVTDE 432
           V+SAS GCVTDE
Sbjct: 556 VKSASEGCVTDE 567

Rhodopirellula baltica (strain SH1) (taxid: 243090)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9

>sp\|B2SH83\|ILVD_FRATM Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|A4IYA1\|ILVD_FRATW Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|A0Q6R5\|ILVD_FRATN Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. novicida (strain U112) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|B0TZC0\|ILVD_FRAP2 Dihydroxy-acid dehydratase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|A6GWT7\|ILVD_FLAPJ Dihydroxy-acid dehydratase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|Q5NH32\|ILVD_FRATT Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|Q14II4\|ILVD_FRAT1 Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|Q11NN5\|ILVD_CYTH3 Dihydroxy-acid dehydratase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|Q10318\|ILV3_SCHPO Putative dihydroxy-acid dehydratase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.06c PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		432
255554188		615	dihydroxy-acid dehydratase, putative [Ri	1.0	0.702	0.893	0.0
224072636		605	predicted protein [Populus trichocarpa]	1.0	0.714	0.893	0.0
224057608		611	predicted protein [Populus trichocarpa]	1.0	0.707	0.884	0.0
357453587		598	Dihydroxy-acid dehydratase [Medicago tru	1.0	0.722	0.870	0.0
225433434		610	PREDICTED: dihydroxy-acid dehydratase-li	1.0	0.708	0.870	0.0
356548991		601	PREDICTED: dihydroxy-acid dehydratase-li	1.0	0.718	0.872	0.0
297741926		526	unnamed protein product [Vitis vinifera]	1.0	0.821	0.870	0.0
449432450		590	PREDICTED: dihydroxy-acid dehydratase-li	1.0	0.732	0.868	0.0
449432448		620	PREDICTED: dihydroxy-acid dehydratase-li	1.0	0.696	0.868	0.0
255671803		601	dihydroxyacid dehydratase [Glycine max]	1.0	0.718	0.870	0.0

>gi\|255554188\|ref\|XP_002518134.1\| dihydroxy-acid dehydratase, putative [Ricinus communis] gi\|223542730\|gb\|EEF44267.1\| dihydroxy-acid dehydratase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/432 (89%), Positives = 411/432 (95%)

Query: 1   MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 60
           MPGTIMAMGRLNRP IMVYGGTIKPGHF GHTYDIVSAFQVYGEYVSGSISDE R NVV 
Sbjct: 184 MPGTIMAMGRLNRPSIMVYGGTIKPGHFNGHTYDIVSAFQVYGEYVSGSISDEDRRNVVR 243

Query: 61  NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
           NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAE+ LKLDECRLAGKYLLELLRMD
Sbjct: 244 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAENQLKLDECRLAGKYLLELLRMD 303

Query: 121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
           LKPRDIIT+KSLRNAMV+VMALGGSTNAVLHLIAIARSVGLEL++D+FQKVSDEVPFLAD
Sbjct: 304 LKPRDIITRKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDEVPFLAD 363

Query: 181 LKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240
           LKPSGKYVMED+HKIGGTPAVIRYLLE GF+DGDC+TVTGKTLAEN +  P L+EGQDII
Sbjct: 364 LKPSGKYVMEDLHKIGGTPAVIRYLLEHGFMDGDCLTVTGKTLAENVRNCPPLAEGQDII 423

Query: 241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMS 300
           R L NPIKKTGH+Q+LRGNLAPEGSVAKITGKEGLYFSGPAL+FEGEE+MIAAISEDPMS
Sbjct: 424 RALENPIKKTGHLQILRGNLAPEGSVAKITGKEGLYFSGPALIFEGEEAMIAAISEDPMS 483

Query: 301 FKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCP 360
           FKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGK+ ALLTDGRFSGGSHGFVVGH+CP
Sbjct: 484 FKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFSGGSHGFVVGHICP 543

Query: 361 EAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKN 420
           EAQ+GGPIGLI+NGDIIN+DV++RRIDVQLTD+E+ ER+R WTPPP K   GVLYKYIKN
Sbjct: 544 EAQEGGPIGLIRNGDIINVDVRERRIDVQLTDQELAERKRNWTPPPYKATGGVLYKYIKN 603

Query: 421 VQSASNGCVTDE 432
           VQSAS GCVTDE
Sbjct: 604 VQSASKGCVTDE 615

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224072636\|ref\|XP_002303818.1\| predicted protein [Populus trichocarpa] gi\|222841250\|gb\|EEE78797.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224057608\|ref\|XP_002299283.1\| predicted protein [Populus trichocarpa] gi\|222846541\|gb\|EEE84088.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357453587\|ref\|XP_003597071.1\| Dihydroxy-acid dehydratase [Medicago truncatula] gi\|355486119\|gb\|AES67322.1\| Dihydroxy-acid dehydratase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|225433434\|ref\|XP_002285667.1\| PREDICTED: dihydroxy-acid dehydratase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356548991\|ref\|XP_003542882.1\| PREDICTED: dihydroxy-acid dehydratase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297741926\|emb\|CBI33361.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449432450\|ref\|XP_004134012.1\| PREDICTED: dihydroxy-acid dehydratase-like isoform 2 [Cucumis sativus] gi\|449522600\|ref\|XP_004168314.1\| PREDICTED: dihydroxy-acid dehydratase-like isoform 2 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449432448\|ref\|XP_004134011.1\| PREDICTED: dihydroxy-acid dehydratase-like isoform 1 [Cucumis sativus] gi\|449522598\|ref\|XP_004168313.1\| PREDICTED: dihydroxy-acid dehydratase-like isoform 1 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255671803\|gb\|ACU26534.1\| dihydroxyacid dehydratase [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		432
TAIR\|locus:2076116		608	AT3G23940 [Arabidopsis thalian	1.0	0.710	0.814	3.9e-186
UNIPROTKB\|G4MKI2		595	MGG_05345 "Dihydroxy-acid dehy	0.997	0.724	0.560	1.6e-127
POMBASE\|SPAC17G8.06c		598	SPAC17G8.06c "dihydroxy-acid d	0.995	0.719	0.564	1.7e-123
ASPGD\|ASPL0000007677		613	AN6346 [Emericella nidulans (t	0.997	0.703	0.544	1.3e-121
CGD\|CAL0004803		589	ILV3 [Candida albicans (taxid:	0.995	0.730	0.530	2e-118
SGD\|S000003777		585	ILV3 "Dihydroxyacid dehydratas	0.995	0.735	0.535	8.8e-118
ASPGD\|ASPL0000009745		603	AN4058 [Emericella nidulans (t	0.993	0.711	0.454	2.1e-100
UNIPROTKB\|P65154		575	ilvD "Dihydroxy-acid dehydrata	0.988	0.742	0.455	1.1e-89
TIGR_CMR\|CHY_0516		553	CHY_0516 "dihydroxy-acid dehyd	0.986	0.770	0.396	2.2e-80
TIGR_CMR\|GSU_1912		553	GSU_1912 "dihydroxy-acid dehyd	0.976	0.763	0.405	1.1e-76

TAIR\|locus:2076116 AT3G23940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1805 (640.5 bits), Expect = 3.9e-186, P = 3.9e-186
 Identities = 352/432 (81%), Positives = 381/432 (88%)

Query:     1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 60
             MPGTIMAMGRLNRPGIMVYGGTIKPGHFQ  TYDIVSAFQ YGE+VSGSISDEQR  V+ 
Sbjct:   177 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQDKTYDIVSAFQSYGEFVSGSISDEQRKTVLH 236

Query:    61 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
             +SCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELL+MD
Sbjct:   237 HSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLKMD 296

Query:   121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
             LKPRDIIT KSLRNAMV VMALGGSTNAVLHLIAIARSVGLEL++D+FQKVSD VPFLAD
Sbjct:   297 LKPRDIITPKSLRNAMVSVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDAVPFLAD 356

Query:   181 LKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240
             LKPSGKYVMED+HKIGGTPAV+RYLLELG +DGDCMTVTG+TLA+N +  P L+EGQ+II
Sbjct:   357 LKPSGKYVMEDIHKIGGTPAVLRYLLELGLMDGDCMTVTGQTLAQNLENVPSLTEGQEII 416

Query:   241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMS 300
             RPLSNPIK+TGHIQ+LRG+LAP+GSVAKITGKEGLYFSGPALVFEGEESM+AAIS DPMS
Sbjct:   417 RPLSNPIKETGHIQILRGDLAPDGSVAKITGKEGLYFSGPALVFEGEESMLAAISADPMS 476

Query:   301 FKGKVVVIRXXXXXXXXXXXXXLTPTSAIMGAGLGKEVALLTDGRXXXXXXXXXXXXXCP 360
             FKG VVVIR             LTPTSAIMGAGLGKE ALLTDGR             CP
Sbjct:   477 FKGTVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKECALLTDGRFSGGSHGFVVGHICP 536

Query:   361 EAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKN 420
             EAQ+GGPIGLI+NGDII ID+ K+RID Q++ EEM +RR+KWT P  KVNRGVLYKYIKN
Sbjct:   537 EAQEGGPIGLIKNGDIITIDIGKKRIDTQVSPEEMNDRRKKWTAPAYKVNRGVLYKYIKN 596

Query:   421 VQSASNGCVTDE 432
             VQSAS+GCVTDE
Sbjct:   597 VQSASDGCVTDE 608

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004160 "dihydroxy-acid dehydratase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB\|G4MKI2 MGG_05345 "Dihydroxy-acid dehydratase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

POMBASE\|SPAC17G8.06c SPAC17G8.06c "dihydroxy-acid dehydratase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000007677 AN6346 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

CGD\|CAL0004803 ILV3 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

SGD\|S000003777 ILV3 "Dihydroxyacid dehydratase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000009745 AN4058 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|P65154 ilvD "Dihydroxy-acid dehydratase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0516 CHY_0516 "dihydroxy-acid dehydratase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1912 GSU_1912 "dihydroxy-acid dehydratase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NH32	ILVD_FRATT	4, ., 2, ., 1, ., 9	0.6037	0.9791	0.7676	yes	no
Q2YC67	ILVD_NITMU	4, ., 2, ., 1, ., 9	0.5347	0.9953	0.7719	yes	no
A4SWN4	ILVD_POLSQ	4, ., 2, ., 1, ., 9	0.5162	0.9953	0.7624	yes	no
Q82XY7	ILVD_NITEU	4, ., 2, ., 1, ., 9	0.5324	0.9953	0.7719	yes	no
Q14II4	ILVD_FRAT1	4, ., 2, ., 1, ., 9	0.6037	0.9791	0.7676	yes	no
Q72TC0	ILVD_LEPIC	4, ., 2, ., 1, ., 9	0.5290	0.9953	0.7678	yes	no
Q8F219	ILVD_LEPIN	4, ., 2, ., 1, ., 9	0.5266	0.9953	0.7678	yes	no
B1WTN3	ILVD_CYAA5	4, ., 2, ., 1, ., 9	0.5138	0.9953	0.7664	yes	no
Q606D6	ILVD_METCA	4, ., 2, ., 1, ., 9	0.5578	0.9976	0.7669	yes	no
Q7UJ69	ILVD_RHOBA	4, ., 2, ., 1, ., 9	0.6666	0.9976	0.7601	yes	no
Q3AXL0	ILVD_SYNS9	4, ., 2, ., 1, ., 9	0.5103	0.9976	0.7737	yes	no
Q8DK13	ILVD_THEEB	4, ., 2, ., 1, ., 9	0.5404	0.9976	0.7696	yes	no
P39522	ILV3_YEAST	4, ., 2, ., 1, ., 9	0.5785	0.9953	0.7350	yes	no
A2RKQ9	ILVD_LACLM	4, ., 2, ., 1, ., 9	0.5925	0.9953	0.7543	yes	no
A6GWT7	ILVD_FLAPJ	4, ., 2, ., 1, ., 9	0.5972	0.9976	0.7724	yes	no
Q1IYZ8	ILVD_DEIGD	4, ., 2, ., 1, ., 9	0.5324	0.9953	0.7624	yes	no
Q7NGK1	ILVD_GLOVI	4, ., 2, ., 1, ., 9	0.5254	0.9953	0.7678	yes	no
B2SH83	ILVD_FRATM	4, ., 2, ., 1, ., 9	0.6125	0.9953	0.7678	yes	no
Q6F6Q0	ILVD2_ACIAD	4, ., 2, ., 1, ., 9	0.5568	0.9884	0.7611	yes	no
Q3ID04	ILVD2_PSEHT	4, ., 2, ., 1, ., 9	0.5625	0.9907	0.7656	yes	no
Q04RA5	ILVD_LEPBJ	4, ., 2, ., 1, ., 9	0.5266	0.9953	0.7678	yes	no
A0Q6R5	ILVD_FRATN	4, ., 2, ., 1, ., 9	0.6194	0.9953	0.7678	yes	no
Q1QU47	ILVD_CHRSD	4, ., 2, ., 1, ., 9	0.5707	0.9884	0.7491	yes	no
B2J456	ILVD_NOSP7	4, ., 2, ., 1, ., 9	0.5300	0.9953	0.7664	yes	no
A2CAC6	ILVD_PROM3	4, ., 2, ., 1, ., 9	0.5196	0.9976	0.7751	yes	no
B7JXB4	ILVD_CYAP8	4, ., 2, ., 1, ., 9	0.5300	0.9953	0.7664	yes	no
B0CEN4	ILVD_ACAM1	4, ., 2, ., 1, ., 9	0.5370	0.9953	0.7664	yes	no
B0JJP7	ILVD_MICAN	4, ., 2, ., 1, ., 9	0.5231	0.9953	0.7664	yes	no
B1XVE9	ILVD_POLNS	4, ., 2, ., 1, ., 9	0.5208	0.9953	0.7637	yes	no
Q02YY5	ILVD_LACLS	4, ., 2, ., 1, ., 9	0.5902	0.9953	0.7543	yes	no
B9LM83	ILVD_CHLSY	4, ., 2, ., 1, ., 9	0.5450	0.9976	0.7682	yes	no
Q0ADX6	ILVD_NITEC	4, ., 2, ., 1, ., 9	0.5254	0.9953	0.7719	yes	no
B8G762	ILVD_CHLAD	4, ., 2, ., 1, ., 9	0.5334	0.9976	0.7641	yes	no
Q2JK60	ILVD_SYNJB	4, ., 2, ., 1, ., 9	0.5370	0.9953	0.7610	yes	no
Q11NN5	ILVD_CYTH3	4, ., 2, ., 1, ., 9	0.5800	0.9953	0.7651	yes	no
Q8YTE6	ILVD_NOSS1	4, ., 2, ., 1, ., 9	0.5532	0.9953	0.7637	yes	no
Q053H5	ILVD_LEPBL	4, ., 2, ., 1, ., 9	0.5266	0.9953	0.7678	yes	no
Q02139	ILVD_LACLA	4, ., 2, ., 1, ., 9	0.5902	0.9953	0.7543	yes	no
Q49UX2	ILVD2_STAS1	4, ., 2, ., 1, ., 9	0.5313	0.9930	0.7606	yes	no
Q7VC95	ILVD_PROMA	4, ., 2, ., 1, ., 9	0.5265	0.9976	0.7724	yes	no
A9BAQ7	ILVD_PROM4	4, ., 2, ., 1, ., 9	0.5126	0.9930	0.7715	yes	no
A9WF68	ILVD_CHLAA	4, ., 2, ., 1, ., 9	0.5450	0.9976	0.7682	yes	no
Q2JTX6	ILVD_SYNJA	4, ., 2, ., 1, ., 9	0.5416	0.9953	0.7610	yes	no
Q7TV16	ILVD_PROMM	4, ., 2, ., 1, ., 9	0.5219	0.9976	0.7751	yes	no
Q7U763	ILVD_SYNPX	4, ., 2, ., 1, ., 9	0.5196	0.9976	0.7737	yes	no
A4IYA1	ILVD_FRATW	4, ., 2, ., 1, ., 9	0.6102	0.9953	0.7678	yes	no
B0TZC0	ILVD_FRAP2	4, ., 2, ., 1, ., 9	0.6171	0.9953	0.7678	yes	no
Q10318	ILV3_SCHPO	4, ., 2, ., 1, ., 9	0.6146	0.9953	0.7190	yes	no
Q3AK67	ILVD_SYNSC	4, ., 2, ., 1, ., 9	0.5162	0.9953	0.7719	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	0.963
4th Layer	4.2.1.9	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_III0598	hypothetical protein (605 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.3049.1	2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)	•	•			•	•	0.997
	estExt_fgenesh4_pg.C_1240037	hypothetical protein (525 aa)	•	•	•		•	•	0.989
	estExt_fgenesh4_pg.C_LG_IV0521	hypothetical protein (589 aa)	•	•	•		•	•	0.977
	grail3.0005029001	acetolactate synthase I/II/III large subunit (EC-2.2.1.6) (651 aa)	•	•	•			•	0.970
	gw1.VII.52.1	branched-chain amino acid aminotransferase (EC-2.6.1.42) (338 aa)	•		•	•	•	•	0.967
	estExt_Genewise1_v1.C_LG_II1818	hypothetical protein (319 aa)	•		•		•	•	0.959
	fgenesh4_pm.C_LG_IX000386	hypothetical protein (339 aa)	•		•		•	•	0.955
	eugene3.00180323	aminodeoxychorismate lyase (EC-4.1.3.38) (295 aa)	•				•	•	0.950
	gw1.1161.2.1	hypothetical protein (342 aa)	•		•		•	•	0.949
	gw1.III.2339.1	3-isopropylmalate isomerase/dehydratase small subunit (EC-4.2.1.33) (172 aa)	•	•				•	0.916

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		432
PRK00911		552	PRK00911, PRK00911, dihydroxy-acid dehydratase; Pr	0.0
pfam00920		521	pfam00920, ILVD_EDD, Dehydratase family	0.0
COG0129		575	COG0129, IlvD, Dihydroxyacid dehydratase/phosphogl	0.0
TIGR00110		535	TIGR00110, ilvD, dihydroxy-acid dehydratase	0.0
PRK06131		571	PRK06131, PRK06131, dihydroxy-acid dehydratase; Va	1e-135
PRK13017		596	PRK13017, PRK13017, dihydroxy-acid dehydratase; Pr	1e-115
PRK12448		615	PRK12448, PRK12448, dihydroxy-acid dehydratase; Pr	1e-113
PRK13016		577	PRK13016, PRK13016, dihydroxy-acid dehydratase; Pr	1e-110
PRK08211		655	PRK08211, PRK08211, putative dehydratase; Provisio	2e-70
PRK09054		603	PRK09054, PRK09054, phosphogluconate dehydratase;	9e-68
TIGR03432		640	TIGR03432, yjhG_yagF, putative dehydratase, YjhG/Y	2e-65
TIGR01196		601	TIGR01196, edd, 6-phosphogluconate dehydratase	6e-58

>gnl\|CDD\|234861 PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

 Score =  735 bits (1901), Expect = 0.0
 Identities = 249/431 (57%), Positives = 309/431 (71%), Gaps = 3/431 (0%)

Query: 1   MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 60
           MPG +MA  RLN P I VYGG I PG  +G    +VS F+  G Y +G IS+E+   +  
Sbjct: 123 MPGMLMAAARLNVPSIFVYGGPILPGRLKGKDLTLVSVFEAVGAYAAGKISEEELKEIER 182

Query: 61  NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
           N+CPGAG+CGGM+TANTMA  IEA+GMSLP S +IPA D  + +  R AG+ ++ELL  D
Sbjct: 183 NACPGAGSCGGMFTANTMACLIEALGMSLPGSGTIPAVDAERDELAREAGEAVVELLEKD 242

Query: 121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
           +KPRDI+T+++  NA+ + MALGGSTNAVLHL+AIA   G++L++D+F ++S   P LAD
Sbjct: 243 IKPRDILTREAFENAIAVDMALGGSTNAVLHLLAIAHEAGVDLTLDDFNRISKRTPHLAD 302

Query: 181 LKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240
           LKPSGKYVMED+H+ GG PAV++ LL+ G L GDC+TVTGKTLAEN    P     QD+I
Sbjct: 303 LKPSGKYVMEDLHEAGGIPAVMKELLDAGLLHGDCLTVTGKTLAENLADAP--DPDQDVI 360

Query: 241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMS 300
           RPL NPI  TG + +L+GNLAPEG+V KI G +   F+GPA VF+ EE  + AI    + 
Sbjct: 361 RPLDNPISPTGGLAILKGNLAPEGAVVKIAGVKPEMFTGPARVFDSEEEAMEAILAGKIK 420

Query: 301 FKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCP 360
             G VVVIR EGPKGGPGM EML PTSAI+GAGLG +VAL+TDGRFSGG+ G  VGHV P
Sbjct: 421 -AGDVVVIRYEGPKGGPGMREMLAPTSAIVGAGLGDDVALITDGRFSGGTRGLCVGHVSP 479

Query: 361 EAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKN 420
           EA  GGPI L+++GDII ID   R +DV ++DEE+  RR  W PP  K  RGVL KY K 
Sbjct: 480 EAAVGGPIALVEDGDIITIDAPNRTLDVLVSDEELARRRAAWKPPEPKYKRGVLAKYAKL 539

Query: 421 VQSASNGCVTD 431
           V SAS G VTD
Sbjct: 540 VSSASTGAVTD 550

Length = 552

>gnl\|CDD\|216192 pfam00920, ILVD_EDD, Dehydratase family	Back alignment and domain information

>gnl\|CDD\|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase	Back alignment and domain information

>gnl\|CDD\|235708 PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated	Back alignment and domain information

>gnl\|CDD\|237272 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|237104 PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|237271 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|236189 PRK08211, PRK08211, putative dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|181628 PRK09054, PRK09054, phosphogluconate dehydratase; Validated	Back alignment and domain information

>gnl\|CDD\|163260 TIGR03432, yjhG_yagF, putative dehydratase, YjhG/YagF family	Back alignment and domain information

>gnl\|CDD\|130264 TIGR01196, edd, 6-phosphogluconate dehydratase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		432
TIGR00110		535	ilvD dihydroxy-acid dehydratase. This model genera	100.0
PRK00911		552	dihydroxy-acid dehydratase; Provisional	100.0
PF00920		521	ILVD_EDD: Dehydratase family; InterPro: IPR000581	100.0
COG0129		575	IlvD Dihydroxyacid dehydratase/phosphogluconate de	100.0
PRK06131		571	dihydroxy-acid dehydratase; Validated	100.0
PRK13016		577	dihydroxy-acid dehydratase; Provisional	100.0
PRK13017		596	dihydroxy-acid dehydratase; Provisional	100.0
PRK12448		615	dihydroxy-acid dehydratase; Provisional	100.0
PRK09054		603	phosphogluconate dehydratase; Validated	100.0
TIGR01196		601	edd 6-phosphogluconate dehydratase. A close homolo	100.0
TIGR03432		640	yjhG_yagF probable dehydratase, YjhG/YagF family.	100.0
PRK08211		655	putative dehydratase; Provisional	100.0
KOG2448		596	consensus Dihydroxy-acid dehydratase [Amino acid t	100.0
PRK09372		159	ribonuclease activity regulator protein RraA; Prov	89.55
PRK08296		603	hypothetical protein; Provisional	88.22
PRK12487		163	ribonuclease activity regulator protein RraA; Revi	85.71
TIGR01935		150	NOT-MenG RraA famliy. This model was initially cla	84.36
PRK06241		871	phosphoenolpyruvate synthase; Validated	81.78

>TIGR00110 ilvD dihydroxy-acid dehydratase	Back alignment and domain information

Probab=100.00  E-value=8e-171  Score=1332.15  Aligned_cols=430  Identities=53%  Similarity=0.918  Sum_probs=422.1

Q ss_pred             ChHHHHhHHhcCCcEEEEcCCCCCCCccC-CeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009            1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQ-GHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA   79 (432)
Q Consensus         1 vPG~lMaaar~niPsi~v~gGpm~~G~~~-g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~   79 (432)
                      +|||||||+|+|||+||||||||+||+++ ||+++++++||++|+|++|+||+|||+++|+++|||||+|+|||||||||
T Consensus       103 ~PG~lMaaarlniP~i~v~gGpm~~G~~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~a~ps~GsC~gmgTANTM~  182 (535)
T TIGR00110       103 TPGMLMAAARLNIPSIFVTGGPMLPGHTKLGKKIDLVSAFEAVGEYAAGKISEEELEEIERSACPGCGSCSGMFTANTMA  182 (535)
T ss_pred             cHHHHHHHHhcCCCEEEEeCCCccCCCCCCCCccchhhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCCcccEEHHHHHH
Confidence            69999999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHh
Q 014009           80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSV  159 (432)
Q Consensus        80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~ea  159 (432)
                      |++|+|||+||||+++||++++|+++|+++|++||+|+++|+|||||||++||+|||+++||+|||||++|||+|||+|+
T Consensus       183 ~l~EaLGl~LPGsa~ipA~~~~r~~~a~~ag~~iv~l~~~~i~p~dIlT~~a~~NAi~v~~A~GGSTNavlHL~AiA~ea  262 (535)
T TIGR00110       183 CLTEALGLSLPGCSTMLATSAEKKRIAKNSGKRIVELVKKNIKPRDILTKEAFENAITVDMALGGSTNTVLHLLAIANEA  262 (535)
T ss_pred             HHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHhCCHHHHHHHHHHhcccCccccHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCCc
Q 014009          160 GLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDI  239 (432)
Q Consensus       160 gi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~V  239 (432)
                      ||+|||||||+||++||+|++++|||+|+|+|||+|||+|+|||+|.+.|+||+|++|||||||+||+++++..+.|++|
T Consensus       263 Gi~l~lddfd~is~~vP~l~~l~P~G~~~~~d~~~aGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~V  342 (535)
T TIGR00110       263 GVDLSLDDFDRLSRKVPHIASLAPSGKYVMEDLHRAGGIPAVLKELDREGLLHGDTLTVTGKTLGEILEQAPVIPEGQDV  342 (535)
T ss_pred             CCCCCHHHHHHHhccCCcceeecCCChhhHHHHHHcCCHHHHHHHHHHCCCcCCCCCCcCCcCHHHHHhcccccCCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987643348999


Q ss_pred             cCCCCCCCCCCCCEEEeeccCCCCCeEEccccCCC--ceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCC
Q 014009          240 IRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG--LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGP  317 (432)
Q Consensus       240 Ir~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~--~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgP  317 (432)
                      |||+++||+++|||+||||||||+|||+|+||++.  ++|+|||+|||||||+++||++++|++ |||||||||||||+|
T Consensus       343 Ir~~~~P~~~~Ggl~iL~GNLaP~GaViK~sa~~~~~~~~~G~A~VF~see~a~~ai~~g~i~~-gdVvViRyeGPkGgP  421 (535)
T TIGR00110       343 IRPLDNPVHQEGGLAILKGNLAPNGAVVKIAGVDEDMTKFEGPAKVFESEEEALEAILGGKIKE-GDVVVIRYEGPKGGP  421 (535)
T ss_pred             ECCccccCCCCCCEEEEecCCCcCCeEEEecccCCcccEEEEeEEEECCHHHHHHHHhcCCCCC-CeEEEEeCCCCCCCC
Confidence            99999999999999999999999999999999754  789999999999999999999999999 999999999999999


Q ss_pred             CCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHH
Q 014009          318 GMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEE  397 (432)
Q Consensus       318 GMpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~~  397 (432)
                      ||||||.+|++|.++||+++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+++||||||++
T Consensus       422 GMpEml~~t~al~g~glg~~VaLITDGRfSGas~G~~igHVsPEAa~GGpIalv~dGD~I~ID~~~r~l~l~v~~~el~~  501 (535)
T TIGR00110       422 GMPEMLAPTSAIKGMGLGKSVALITDGRFSGGTRGLCIGHVSPEAAEGGPIALVEDGDIIIIDIPNRKLDLQVSDEELAE  501 (535)
T ss_pred             ChhhhcchHHHHHhCCCCCceEEeccCccCCcCCCCEEEEEChhhhcCCcEEEEeCCCEEEEECCCCEEEEecCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCChHHHHHHHHhCCCcccCcccC
Q 014009          398 RRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD  431 (432)
Q Consensus       398 R~~~~~~~~~~~~~G~l~~Y~~~V~~A~~GA~~~  431 (432)
                      ||++|+||++++++|||++|+++|+||++||+++
T Consensus       502 R~~~~~~~~~~~~~G~l~~y~~~v~~A~~Gav~~  535 (535)
T TIGR00110       502 RRASWKAPEPRYVKGYLAKYAKLVSSADEGAVLD  535 (535)
T ss_pred             HHhhcCCCCCCCChHHHHHHHHhCcCHhhCCcCC
Confidence            9999999988899999999999999999999985

This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.

>PRK00911 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4	Back alignment and domain information

>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK06131 dihydroxy-acid dehydratase; Validated	Back alignment and domain information

>PRK13016 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>PRK13017 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>PRK12448 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>PRK09054 phosphogluconate dehydratase; Validated	Back alignment and domain information

>TIGR01196 edd 6-phosphogluconate dehydratase	Back alignment and domain information

>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family	Back alignment and domain information

>PRK08211 putative dehydratase; Provisional	Back alignment and domain information

>KOG2448 consensus Dihydroxy-acid dehydratase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09372 ribonuclease activity regulator protein RraA; Provisional	Back alignment and domain information

>PRK08296 hypothetical protein; Provisional	Back alignment and domain information

>PRK12487 ribonuclease activity regulator protein RraA; Reviewed	Back alignment and domain information

>TIGR01935 NOT-MenG RraA famliy	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		432
2gp4_A		628	Structure Of [fes]cluster-free Apo Form Of 6-phosph		8e-33

>pdb|2GP4|A Chain A, Structure Of [fes]cluster-free Apo Form Of 6-phosphogluconate Dehydratase From Shewanella Oneidensis Length = 628

Back alignment and structure

Iteration: 1

Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 181/380 (47%), Gaps = 27/380 (7%) Query: 40 QVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAED 99 ++ ++ G + Q + S AG C TAN+ +E G+ LP SS + +D Sbjct: 212 RIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLXLEVXGLQLPGSSFVNPDD 271 Query: 100 PLKLDECRLAGKYLLELLRMDLKPR---DIITKKSLRNAMVIVMALGGSTNAVLHLIAIA 156 PL+ + A K + L + + +++ +KS+ N +V ++A GGSTN H++A A Sbjct: 272 PLREALNKXAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTXHIVAAA 331 Query: 157 RSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCM 216 R+ G+ ++ D+F ++SD VP LA + P+G + H GG +I+ LL+ G L D Sbjct: 332 RAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGXAFLIKELLDAGLLHEDVN 391 Query: 217 TVTGKTLAENAKTFPHLSEGQ-------------DIIRPLSNPIKKTGHIQVLRGNLAPE 263 TV G L + P L +G+ +++ ++ P + G +++L+GNL Sbjct: 392 TVAGYGLRRYTQE-PKLLDGELRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR- 449 Query: 264 GSVAKITGKEGLY--FSGPALVFEGEESMIAAISEDPMSFKGKVVVIRXXXXXXXXXXXX 321 +V K++ + + PA+V + + + A + VVV Sbjct: 450 -AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKANGXPELH 508 Query: 322 XLTPTSAIMGA--GLGKEVALLTDGRXXXXXXXX-XXXXXCPEAQDGGPIGLIQNGDIIN 378 LTP ++G+ G +VAL TDGR PEA DGG I +Q+GD+I Sbjct: 509 KLTP---LLGSLQDKGFKVALXTDGRXSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIR 565 Query: 379 IDVQKRRIDVQLTDEEMEER 398 +D + + ++D E+ R Sbjct: 566 VDALTGELSLLVSDTELATR 585

PyMOL of 2gp4

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		432
2gp4_A		628	6-phosphogluconate dehydratase; N-terminal domain	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1 Length = 628	Back alignment and structure

 Score =  579 bits (1495), Expect = 0.0
 Identities = 126/454 (27%), Positives = 213/454 (46%), Gaps = 33/454 (7%)

Query: 1   MPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVV 59
           +PG ++      + P + V  G +K G        I   F        G +   Q +   
Sbjct: 178 VPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFA------QGKVDRAQLLEAE 231

Query: 60  LNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM 119
             S   AG C    TAN+    +E MG+ LP SS +  +DPL+    ++A K +  L  +
Sbjct: 232 AQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTEL 291

Query: 120 DLKPR---DIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVP 176
             +     +++ +KS+ N +V ++A GGSTN  +H++A AR+ G+ ++ D+F ++SD VP
Sbjct: 292 GTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVP 351

Query: 177 FLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAK-------- 228
            LA + P+G   +   H  GG   +I+ LL+ G L  D  TV G  L    +        
Sbjct: 352 LLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE 411

Query: 229 ----TFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITG--KEGLYFSGPAL 282
                 P +S   +++  ++ P +  G +++L+GNL    +V K++    +      PA+
Sbjct: 412 LRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAV 469

Query: 283 VFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMG-AGLGKEVALL 341
           V + +  + A      +  +  VVV++G+GPK   GMPE+   T  +      G +VAL+
Sbjct: 470 VIDDQNKLDALFKSGALD-RDCVVVVKGQGPKAN-GMPELHKLTPLLGSLQDKGFKVALM 527

Query: 342 TDGRFSGGSHGF-VVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRR 400
           TDGR SG S       H+ PEA DGG I  +Q+GD+I +D     + + ++D E+  R  
Sbjct: 528 TDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTA 587

Query: 401 KWTPPPNK---VNRGVLYKYIKNVQSASNGCVTD 431
                 +    + R +      N+ S   G  + 
Sbjct: 588 TEIDLRHSRYGMGRELFGVLRSNLSSPETGARST 621

PyMOL of 2gp4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		432
2gp4_A		628	6-phosphogluconate dehydratase; N-terminal domain	100.0

>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1	Back alignment and structure

Probab=100.00  E-value=7.5e-159  Score=1252.47  Aligned_cols=418  Identities=30%  Similarity=0.512  Sum_probs=378.8

Q ss_pred             ChHHHHhHHhc-CCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009            1 MPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA   79 (432)
Q Consensus         1 vPG~lMaaar~-niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~   79 (432)
                      +|||||||+|+ |||+||||||||++|+++|+++++.      ++|++|+||+|||.++|+++|||||+|+|||||||||
T Consensus       178 ~PG~LMaA~r~~niPaIfV~gGpM~~G~~~g~~~~i~------~~~a~G~i~~eel~~~E~~acps~GsC~gmgTANTM~  251 (628)
T 2gp4_A          178 VPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIR------QQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQ  251 (628)
T ss_dssp             THHHHHHHHTTTTSCEEECCCCC-------------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----C
T ss_pred             cHHHHHHHHhcCCCCEEEEeeCCCCCCCCCCceeehH------HHHHcCCCCHHHHHHHHHhcCCCCCccCCcChHHHHH
Confidence            79999999999 7999999999999999999988664      6899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCC--CCc-cccccHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 014009           80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD--LKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIA  156 (432)
Q Consensus        80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~--i~p-rdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA  156 (432)
                      |++|+|||+||||+++||++++|.++|+++|++||+|++++  +|| |||+|++||+|||+++||+|||||++|||+|||
T Consensus       252 ~l~EaLGl~LPGsa~ipA~~~~R~~la~~ag~~iv~l~~~~~d~~P~~dIlT~~AfeNAi~v~~A~GGSTN~vLHL~AiA  331 (628)
T 2gp4_A          252 LMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAA  331 (628)
T ss_dssp             HHHHHTTCSCTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHhCCHHHHHHHHHHHhccCccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999955  999 999999999999999999999999999999999


Q ss_pred             HHhCCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcC------
Q 014009          157 RSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTF------  230 (432)
Q Consensus       157 ~eagi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~------  230 (432)
                      +|+||+|||||||+||++||+||+++|||+|+|+|||+|||+|+|||||.++||||+|++|||||||+||++++      
T Consensus       332 ~eaGv~ltldDfd~is~~vP~L~~l~P~G~~~medf~~AGGvpavm~eL~~~GlLh~D~~TVtGktl~e~l~~~~~~~~~  411 (628)
T 2gp4_A          332 RAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE  411 (628)
T ss_dssp             HHTTCCCCHHHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTE
T ss_pred             HHcCCCCCHHHHHHHhccCCCcceeCCCChhHHHHHHHccCHHHHHHHHHHCCCcCCCCCeeCCCCHHHHHhCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999873      


Q ss_pred             ------CCCCCCCCccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--CceeeeeEEEeCCHHHHHHHHhCCCCCCC
Q 014009          231 ------PHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMSFK  302 (432)
Q Consensus       231 ------~~~~~d~~VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~~~GpA~VF~see~a~~ai~~g~i~~~  302 (432)
                            +..+.|++||||+++||+++|||+||+||||  |||+|+||++  .++|+|||||||||||+++||++|+|++ 
T Consensus       412 ~~~~~~~~~~~d~~VIrp~~~P~~~~GGl~vL~GNLa--gaViK~sav~~~~~~~~GpArVFdsee~a~~ai~~g~i~~-  488 (628)
T 2gp4_A          412 LRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDR-  488 (628)
T ss_dssp             EEEEECCSSCSCTTTBCCSSSCSBSSCCEEEEEETTE--EEEEECTTSCGGGSEEEEEEEEESSGGGHHHHHHTTTTSS-
T ss_pred             cccccCCCCCCCCCeeCChhhcCCCCCCEEEEecccc--CEEeEccccCCccceEEeeeEEeCCHHHHHHHHhCCCCCC-
Confidence                  2223689999999999999999999999998  7999999975  5679999999999999999999999999 


Q ss_pred             CcEEEEeCCCCCCCCCCCCCcchhHHHH---cCCCCCceEEEcCCCCCCCCCC-cceEEecccccCCCCeEEeecCCEEE
Q 014009          303 GKVVVIRGEGPKGGPGMPEMLTPTSAIM---GAGLGKEVALLTDGRFSGGSHG-FVVGHVCPEAQDGGPIGLIQNGDIIN  378 (432)
Q Consensus       303 gdVvViRyeGPkGgPGMpEml~~t~al~---g~Gl~~~valITDGRfSGas~G-~~igHVsPEAa~GGpIalV~dGD~I~  378 (432)
                      |||||||||||||+ |||||+.+|++|.   ++|+  +|||||||||||+|+| +|||||||||++|||||+|||||+|+
T Consensus       489 gdVvVIRyeGPkG~-GMpEml~~T~~l~~L~g~Gl--~VALITDGRfSGaS~gg~~igHVsPEAa~GGpIalV~dGD~I~  565 (628)
T 2gp4_A          489 DCVVVVKGQGPKAN-GMPELHKLTPLLGSLQDKGF--KVALMTDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIR  565 (628)
T ss_dssp             SEEEEECSCSHHHH-SCCBCCSSHHHHHHHHHTTC--CEEEEESSBCSSSCCSSCEEEEEESCGGGTCGGGTCCTTCEEE
T ss_pred             CeEEEEeCCCCCCC-CchhhhhhhhhHHHHHhCCC--eEEEecccCcCCccCCCCeEEEEChhhhcCCcEEEEeCCCEEE
Confidence            99999999999986 9999999997555   9998  6999999999999995 99999999999999999999999999


Q ss_pred             EecCCCEEEEecCHHHHHHHHhcCCCCCC---CCChHHHHHHHHhCCCcccCccc
Q 014009          379 IDVQKRRIDVQLTDEEMEERRRKWTPPPN---KVNRGVLYKYIKNVQSASNGCVT  430 (432)
Q Consensus       379 IDi~~~~l~l~v~~eel~~R~~~~~~~~~---~~~~G~l~~Y~~~V~~A~~GA~~  430 (432)
                      ||+++|+|+|+||||||++||+.|+||++   ++++|||++|+++|+||++||++
T Consensus       566 IDi~~r~l~l~v~deEla~R~~~~~~~~~~~~~~~~g~l~~y~~~V~sA~~GA~~  620 (628)
T 2gp4_A          566 VDALTGELSLLVSDTELATRTATEIDLRHSRYGMGRELFGVLRSNLSSPETGARS  620 (628)
T ss_dssp             EETTTTEEEECSCHHHHHHCCCCCCCCGGGSSSTTGGGSHHHHHTCCCGGGTSCC
T ss_pred             EecCCCEEEEeeCHHHHHHhHhcCCCCcccccCccHHHHHHHHHhCcCHhhCCee
Confidence            99999999999999999999999988765   67899999999999999999987

PyMOL of 2gp4

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		432
d2gp4a2		418	d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase	2e-72
d2gp4a1		190	c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase	9e-48

>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} Length = 418	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: IlvD/EDD N-terminal domain-like
superfamily: IlvD/EDD N-terminal domain-like
family: lvD/EDD N-terminal domain-like
domain: 6-phosphogluconate dehydratase EDD
species: Shewanella oneidensis [TaxId: 70863]

 Score =  231 bits (591), Expect = 2e-72
 Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 22/267 (8%)

Query: 1   MPGTIM-AMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVV 59
           +PG ++ A+   + P + V  G +K G        I   F          +   Q +   
Sbjct: 158 VPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQG------KVDRAQLLEAE 211

Query: 60  LNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM 119
             S   AG C    TAN+    +E MG+ LP SS +  +DPL+    ++A K +  L  +
Sbjct: 212 AQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTEL 271

Query: 120 ---DLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVP 176
                   +++ +KS+ N +V ++A GGSTN  +H++A AR+ G+ ++ D+F ++SD VP
Sbjct: 272 GTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVP 331

Query: 177 FLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKT------- 229
            LA + P+G   +   H  GG   +I+ LL+ G L  D  TV G  L    +        
Sbjct: 332 LLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE 391

Query: 230 -----FPHLSEGQDIIRPLSNPIKKTG 251
                 P +S   +++  ++ P +  G
Sbjct: 392 LRWVDGPTVSLDTEVLTSVATPFQNNG 418

PyMOL of d2gp4a2

>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} Length = 190	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		432
d2gp4a2		418	6-phosphogluconate dehydratase EDD {Shewanella one	100.0
d2gp4a1		190	6-phosphogluconate dehydratase EDD {Shewanella one	100.0
d2hi6a1		132	Hypothetical protein AF0055 {Archaeoglobus fulgidu	88.69

>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IlvD/EDD N-terminal domain-like
superfamily: IlvD/EDD N-terminal domain-like
family: lvD/EDD N-terminal domain-like
domain: 6-phosphogluconate dehydratase EDD
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=3.7e-88  Score=689.16  Aligned_cols=245  Identities=29%  Similarity=0.480  Sum_probs=211.6

Q ss_pred             ChHHHHhHHhcC-CcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009            1 MPGTIMAMGRLN-RPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA   79 (432)
Q Consensus         1 vPG~lMaaar~n-iPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~   79 (432)
                      +|||||||+|+| +|+||||||||+||.++|+++++.+      +|++|+||++||.++|+++|||+|+|+|||||||||
T Consensus       158 vPG~lMaa~r~n~lPsI~v~gGpm~~G~~~~~~~~~~~------~~~~G~i~~~el~~~E~~a~p~~GtC~~mgTANTm~  231 (418)
T d2gp4a2         158 VPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQ------QFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQ  231 (418)
T ss_dssp             THHHHHHHHTTTTSCEEECCCCC-------------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----C
T ss_pred             ChHHHHHHHhccCCCEEEEccCCcCCCccCCCCceEee------ccccccccHHHHHHHHHhccCCCCccchhHHHHHHH
Confidence            799999999996 9999999999999999999876654      789999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---CCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 014009           80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLR---MDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIA  156 (432)
Q Consensus        80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~---~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA  156 (432)
                      |++|+|||+|||||++||++++|.++++++|++++++++   ++++||||||++||+|||++++|+|||||++|||+|||
T Consensus       232 ~l~EalGl~LPGsa~vpa~~~~r~~~a~~ag~~~~~~~~~~~~~~~~~dIlt~~a~~NAi~~~~A~GGSTNavlHL~AIA  311 (418)
T d2gp4a2         232 LMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAA  311 (418)
T ss_dssp             HHHHHTTCSCTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHH
T ss_pred             HHHHHhccCcccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCHHHhhCHHHHHhhhhHHhcccchHhhhcccHHHH
Confidence            999999999999999999999999999999999997765   55678999999999999999999999999999999999


Q ss_pred             HHhCCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCC-----
Q 014009          157 RSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFP-----  231 (432)
Q Consensus       157 ~eagi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~-----  231 (432)
                      +|+||+|||+|||+||++||+|++|+|+|+|+|+|||+|||+|+|||+|+++||||+|++||||+||+||+++.+     
T Consensus       312 ~eaGi~l~l~dfd~is~~~P~L~~l~P~G~~~m~d~~~AGGvp~v~k~L~~~glLh~D~~TVtG~tl~e~l~~~~~~~~~  391 (418)
T d2gp4a2         312 RAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE  391 (418)
T ss_dssp             HHTTCCCCHHHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTE
T ss_pred             hhcCCCCCHHHHHHHhCCCCeeeeeccCCcchHHHHHhhcCHHHHHHHHHHCCCccCCCCCcCCcCHHHHHcCCCccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998642     


Q ss_pred             -------CCCCCCCccCCCCCCCCCCC
Q 014009          232 -------HLSEGQDIIRPLSNPIKKTG  251 (432)
Q Consensus       232 -------~~~~d~~VIr~~~~P~~~~G  251 (432)
                             ..+.|++||||+++||+++|
T Consensus       392 i~~~~~p~~~~d~~VIrp~~~P~~~~G  418 (418)
T d2gp4a2         392 LRWVDGPTVSLDTEVLTSVATPFQNNG  418 (418)
T ss_dssp             EEEEECCSSCSCTTTBCCSSSCSBSSC
T ss_pred             eeeccCCCCCCCCCEeCccccCCCCCC
Confidence                   22358999999999999987

PyMOL of d2gp4a2

>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]}	Back information, alignment and structure

>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure