Citrus Sinensis ID: 014159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
cccccccHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHccccHHHHHHHHHccccHHcHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEHHHHcHHHHHHHHHHHHccccccccccccccc
cccccccHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHcccEEEccccccccEEEcccccccHHHHHHHHHcHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
medssidfgdffkgplpgkFLKLLGYLALSRlgiyiplggvnreafvgnldqnsllstldsfsgggigrlgicslgivpfINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLylrpyvndfstdwVLTSVTLLTLGSAFTTYIGErisdlklgngtsLLIFTSIISylpasfgrtvaeafqdgnyiGLATIIISFILLVLGIVYVqeaerkipinyasrytsrsgglqrsaylpfkvnssgvmpiifstsslalpgtlaRFTGIAALKKAAVAlnpggsfylptnILLIAFFNYYYTflqldpddvsEQLKrqgasiplvrpgksTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQkykniefydidsygs
medssidfgdffkgplPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASrytsrsgglqRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQgasiplvrpgkSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEiisqkykniefydidsygs
MEDSSIDFGDffkgplpgkflkllgYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFstdwvltsvtlltlGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
******DFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDL*******GRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPD************IPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDID****
*****IDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQK****AGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYT*****LQ**AYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEF*D******
MEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
***SSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDI*****
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query429 2.2.26 [Sep-21-2011]
O63066553 Preprotein translocase su N/A no 0.997 0.773 0.897 0.0
Q38885551 Preprotein translocase su yes no 0.995 0.774 0.899 0.0
Q6ZG25556 Preprotein translocase su yes no 0.995 0.767 0.903 0.0
Q9XQU4527 Preprotein translocase su N/A no 0.995 0.810 0.880 0.0
P93690545 Preprotein translocase su N/A no 0.990 0.779 0.88 0.0
P77964442 Protein translocase subun N/A no 0.906 0.880 0.425 4e-86
P0A4H1439 Protein translocase subun yes no 0.930 0.908 0.423 5e-86
P0A4H0439 Protein translocase subun yes no 0.930 0.908 0.423 5e-86
Q1XDJ1411 Protein translocase subun N/A no 0.946 0.987 0.405 1e-85
P51297411 Protein translocase subun N/A no 0.890 0.929 0.414 2e-85
>sp|O63066|SECY_MAIZE Preprotein translocase subunit SECY, chloroplastic OS=Zea mays GN=SECY PE=2 SV=1 Back     alignment and function desciption
 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/428 (89%), Positives = 416/428 (97%)

Query: 1   MEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLD 60
           +EDSSID GDFFKGPLPGKFLKLLG+LALSRLG+YIPLGGVNREAF GNLDQNSLL TLD
Sbjct: 125 IEDSSIDIGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFAGNLDQNSLLGTLD 184

Query: 61  SFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYAS 120
           SFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQ++EGEAGRKKVLQYTRYAS
Sbjct: 185 SFSGGGIGRLGICSLGIVPFINAQIVFQLLAQLYPKLQDLQRKEGEAGRKKVLQYTRYAS 244

Query: 121 VGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLL 180
           VGFAIVQAIGQVLYLRPYVNDFST+WVLTSVTLLTLGS FTT+IGERISDLKLGNGTSLL
Sbjct: 245 VGFAIVQAIGQVLYLRPYVNDFSTEWVLTSVTLLTLGSVFTTFIGERISDLKLGNGTSLL 304

Query: 181 IFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASR 240
           IFTSIISYLPASFGRTVA+AFQDGNY+GL TII+SF+LLVLGIVYVQEAERKIP+NYASR
Sbjct: 305 IFTSIISYLPASFGRTVAQAFQDGNYVGLLTIILSFLLLVLGIVYVQEAERKIPLNYASR 364

Query: 241 YTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGS 300
           Y+SR+G LQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARF+G+  LKKAA+ALNPGG+
Sbjct: 365 YSSRTGELQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFSGLDFLKKAAIALNPGGA 424

Query: 301 FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISV 360
            YLPTN+LLIAFFNYYYTFLQLDPDD+SEQLKRQGASIPLVRPGKSTAA++KTVL+RISV
Sbjct: 425 LYLPTNVLLIAFFNYYYTFLQLDPDDLSEQLKRQGASIPLVRPGKSTAAYIKTVLNRISV 484

Query: 361 LGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 420
           LGS FLA+LAAGP+++EQT+HLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE
Sbjct: 485 LGSAFLAVLAAGPSLVEQTSHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 544

Query: 421 FYDIDSYG 428
           FYD++ +G
Sbjct: 545 FYDVNRFG 552
The central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
Zea mays (taxid: 4577)
>sp|Q38885|SCY1_ARATH Preprotein translocase subunit SCY1, chloroplastic OS=Arabidopsis thaliana GN=SCY1 PE=1 SV=2 Back     alignment and function description
>sp|Q6ZG25|SECY_ORYSJ Preprotein translocase subunit SECY, chloroplastic OS=Oryza sativa subsp. japonica GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic OS=Pisum sativum GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|P93690|SECY_SPIOL Preprotein translocase subunit SECY, chloroplastic OS=Spinacia oleracea GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|P77964|SECY_SYNY3 Protein translocase subunit SecY OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H1|SECY_SYNP6 Protein translocase subunit SecY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H0|SECY_SYNE7 Protein translocase subunit SecY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q1XDJ1|SECY_PORYE Protein translocase subunit SecY OS=Porphyra yezoensis GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P51297|SECY_PORPU Protein translocase subunit SecY OS=Porphyra purpurea GN=secY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
224142301478 SecY protein [Populus trichocarpa] gi|22 0.997 0.895 0.943 0.0
255584934 557 protein translocase secy subunit, putati 0.993 0.764 0.943 0.0
449524114 546 PREDICTED: preprotein translocase subuni 0.995 0.782 0.929 0.0
356517020 540 PREDICTED: preprotein translocase subuni 0.995 0.790 0.901 0.0
218200780 1155 hypothetical protein OsI_28473 [Oryza sa 0.995 0.369 0.903 0.0
224091887430 SecY protein [Populus trichocarpa] gi|22 0.995 0.993 0.922 0.0
297836616 549 hypothetical protein ARALYDRAFT_480774 [ 0.995 0.777 0.899 0.0
413916905 553 chloroplast SecY-1 [Zea mays] 0.997 0.773 0.899 0.0
381388744 553 preprotein translocase subunit SECY, chl 0.997 0.773 0.899 0.0
12643627 553 RecName: Full=Preprotein translocase sub 0.997 0.773 0.897 0.0
>gi|224142301|ref|XP_002324497.1| SecY protein [Populus trichocarpa] gi|222865931|gb|EEF03062.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/428 (94%), Positives = 417/428 (97%)

Query: 1   MEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLD 60
           +EDSSIDFGDFFKGPLPGKFLKLLG+LALSRLGIYIPLGGVN+EAF GNLDQNSLLSTLD
Sbjct: 50  IEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNQEAFAGNLDQNSLLSTLD 109

Query: 61  SFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYAS 120
           SFSGGGIGRLGICSLGIVPFINAQIVFQLLAQI PKLQDLQKREGEAGRKK+LQYTRYAS
Sbjct: 110 SFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKLLQYTRYAS 169

Query: 121 VGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLL 180
           VGFAIVQAIGQVLYLRPYV+DF+T WVLTSVTLLTLGS FTTYIGERISDLKLGNGTSLL
Sbjct: 170 VGFAIVQAIGQVLYLRPYVDDFNTQWVLTSVTLLTLGSVFTTYIGERISDLKLGNGTSLL 229

Query: 181 IFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASR 240
           IFTSIISYLPASFGRT AEAFQDGNY+GL TII SF LLVLGIVYVQEAERKIP+NYASR
Sbjct: 230 IFTSIISYLPASFGRTAAEAFQDGNYVGLGTIIFSFFLLVLGIVYVQEAERKIPLNYASR 289

Query: 241 YTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGS 300
           YTSRSGGLQ+SAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI+ALKKAA+ALNPGGS
Sbjct: 290 YTSRSGGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKKAALALNPGGS 349

Query: 301 FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISV 360
           FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISV
Sbjct: 350 FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISV 409

Query: 361 LGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 420
           LGS FLAILAAGP+VIEQ +HLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE
Sbjct: 410 LGSAFLAILAAGPSVIEQISHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 469

Query: 421 FYDIDSYG 428
           FYDID YG
Sbjct: 470 FYDIDRYG 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255584934|ref|XP_002533181.1| protein translocase secy subunit, putative [Ricinus communis] gi|223527015|gb|EEF29204.1| protein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449524114|ref|XP_004169068.1| PREDICTED: preprotein translocase subunit SCY1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517020|ref|XP_003527188.1| PREDICTED: preprotein translocase subunit secY, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|218200780|gb|EEC83207.1| hypothetical protein OsI_28473 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|224091887|ref|XP_002309386.1| SecY protein [Populus trichocarpa] gi|222855362|gb|EEE92909.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297836616|ref|XP_002886190.1| hypothetical protein ARALYDRAFT_480774 [Arabidopsis lyrata subsp. lyrata] gi|297332030|gb|EFH62449.1| hypothetical protein ARALYDRAFT_480774 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|413916905|gb|AFW56837.1| chloroplast SecY-1 [Zea mays] Back     alignment and taxonomy information
>gi|381388744|ref|NP_001105505.2| preprotein translocase subunit SECY, chloroplastic [Zea mays] gi|194701264|gb|ACF84716.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|12643627|sp|O63066.1|SECY_MAIZE RecName: Full=Preprotein translocase subunit SECY, chloroplastic; AltName: Full=CpSecY; Flags: Precursor gi|2934902|gb|AAC05019.1| cpSecY [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
TAIR|locus:2054038551 SCY1 "AT2G18710" [Arabidopsis 0.995 0.774 0.838 1.2e-186
TIGR_CMR|CBU_0258442 CBU_0258 "preprotein transloca 0.897 0.871 0.345 6.2e-62
TIGR_CMR|GSU_2837435 GSU_2837 "preprotein transloca 0.897 0.885 0.348 1.3e-61
TIGR_CMR|SPO_0506455 SPO_0506 "preprotein transloca 0.899 0.848 0.361 5e-60
TIGR_CMR|BA_0130433 BA_0130 "preprotein translocas 0.906 0.898 0.330 2.2e-59
UNIPROTKB|P78283444 secY "Protein translocase subu 0.927 0.896 0.322 2.7e-59
TIGR_CMR|VC_2576444 VC_2576 "preprotein translocas 0.927 0.896 0.322 2.7e-59
TIGR_CMR|CHY_2289419 CHY_2289 "preprotein transloca 0.897 0.918 0.337 4e-58
NCBI_NP|NP_354903.2446 prlA "preprotein translocase s 0.899 0.865 0.351 1.7e-57
TIGR_CMR|CPS_0621445 CPS_0621 "preprotein transloca 0.927 0.894 0.318 2.8e-57
TAIR|locus:2054038 SCY1 "AT2G18710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1810 (642.2 bits), Expect = 1.2e-186, P = 1.2e-186
 Identities = 358/427 (83%), Positives = 380/427 (88%)

Query:     1 MEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLD 60
             +EDSSIDFGD               +LALSRLGIYIPLGGVNREAFVGNLDQNS+LSTLD
Sbjct:   123 IEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSILSTLD 182

Query:    61 SFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYAS 120
             +FSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+EGEAGRKK+LQYTRYAS
Sbjct:   183 TFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRYAS 242

Query:   121 VGFAIVQAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLL 180
             VGFAIVQAIGQV YLRPYVNDF              GS  TTYIGERISDLKLGNGTSLL
Sbjct:   243 VGFAIVQAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGTSLL 302

Query:   181 IFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASR 240
             IFTSIISYLPASFGRT AEA Q+GNY GL TI++SF+LLVLGIVYVQEAERKIP+NYASR
Sbjct:   303 IFTSIISYLPASFGRTTAEALQEGNYTGLGTIVVSFLLLVLGIVYVQEAERKIPLNYASR 362

Query:   241 YTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGS 300
             YTS++GGLQ+SAYLPFKVNS+GVMPIIFSTSSLALP TLARFTGI+ALK  A AL PGGS
Sbjct:   363 YTSKAGGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAFALTPGGS 422

Query:   301 FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISV 360
             FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTA F+KTVL RISV
Sbjct:   423 FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTALFIKTVLGRISV 482

Query:   361 LGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 420
             LGS FLA+LAAGPAV+EQ THLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE
Sbjct:   483 LGSAFLAVLAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 542

Query:   421 FYDIDSY 427
             FY++D Y
Sbjct:   543 FYELDKY 549
GO:0009306 "protein secretion" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0010027 "thylakoid membrane organization" evidence=ISS
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
TIGR_CMR|CBU_0258 CBU_0258 "preprotein translocase, SecY subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2837 GSU_2837 "preprotein translocase, SecY subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0506 SPO_0506 "preprotein translocase, SecY subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0130 BA_0130 "preprotein translocase, SecY subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P78283 secY "Protein translocase subunit SecY" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2576 VC_2576 "preprotein translocase, SecY subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2289 CHY_2289 "preprotein translocase, SecY subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
NCBI_NP|NP_354903.2 prlA "preprotein translocase subunit SecY" [Agrobacterium fabrum str. C58 (taxid:176299)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0621 CPS_0621 "preprotein translocase, SecY subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P78283SECY_VIBCHNo assigned EC number0.32770.93470.9031yesno
Q38885SCY1_ARATHNo assigned EC number0.89920.99530.7749yesno
O63066SECY_MAIZENo assigned EC number0.89710.99760.7739N/Ano
Q05207SECY_BACLDNo assigned EC number0.33010.91140.9071yesno
Q9Z7S5SECY_CHLPNNo assigned EC number0.31670.94870.8905yesno
P43416SECY_STRSCNo assigned EC number0.33170.95100.9336yesno
P93690SECY_SPIOLNo assigned EC number0.880.99060.7798N/Ano
Q7A468SECY_STAANNo assigned EC number0.36010.94400.9418yesno
P0AGA5SECY_SHIFLNo assigned EC number0.31700.96030.9300yesno
P16336SECY_BACSUNo assigned EC number0.32770.91840.9141yesno
Q5HM19SECY_STAEQNo assigned EC number0.36760.90900.9069yesno
Q9HWF5SECY_PSEAENo assigned EC number0.35830.91370.8868yesno
O25879SECY_HELPYNo assigned EC number0.33730.93000.95yesno
P0A5Z2SECY_MYCTUNo assigned EC number0.32710.91370.8888yesno
P0A5Z3SECY_MYCBONo assigned EC number0.32710.91370.8888yesno
Q8CNF3SECY_STAESNo assigned EC number0.36760.90900.9069yesno
P46785SECY_STRCONo assigned EC number0.33330.94170.9244yesno
Q7A086SECY_STAAWNo assigned EC number0.36010.94400.9418yesno
P28527SECY_GUITHNo assigned EC number0.39170.94400.9642yesno
P0A4H1SECY_SYNP6No assigned EC number0.42340.93000.9088yesno
P0A4H0SECY_SYNE7No assigned EC number0.42340.93000.9088yesno
P38376SECY_CORGLNo assigned EC number0.32190.93700.9136yesno
P38375SECY_BACHDNo assigned EC number0.34750.93700.9348yesno
Q9ZJS9SECY_HELPJNo assigned EC number0.33730.93000.95yesno
Q9PJN1SECY_CHLMUNo assigned EC number0.32070.91600.8599yesno
Q5HDX8SECY_STAACNo assigned EC number0.36010.94400.9418yesno
O33006SECY_MYCLENo assigned EC number0.32000.90670.8881yesno
Q68W98SECY_RICTYNo assigned EC number0.32260.90670.8983yesno
Q05217SECY_STACTNo assigned EC number0.35930.95100.9488yesno
O66491SECY_AQUAENo assigned EC number0.37280.92300.9230yesno
P43804SECY_HAEINNo assigned EC number0.34520.93240.9070yesno
Q9X1I9SECY_THEMANo assigned EC number0.34630.87640.8723yesno
Q6GEK3SECY_STAARNo assigned EC number0.36010.94400.9418yesno
P28539SECY_CHLTRNo assigned EC number0.32310.91600.8599yesno
Q9XQU4SECY_PEANo assigned EC number0.88050.99530.8102N/Ano
Q6G791SECY_STAASNo assigned EC number0.36010.94400.9418yesno
Q5SHQ8SECY_THET8No assigned EC number0.33740.89740.8789yesno
F6CD01SECY1_LACKZNo assigned EC number0.33490.88570.8816yesno
O08387SECY_STAA8No assigned EC number0.36010.94400.9418yesno
Q59916SECY_STRGRNo assigned EC number0.33100.94170.9244yesno
Q99S39SECY_STAAMNo assigned EC number0.36010.94400.9418yesno
Q6ZG25SECY_ORYSJNo assigned EC number0.90390.99530.7679yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 1e-136
CHL00161417 CHL00161, secY, preprotein translocase subunit Sec 1e-116
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 1e-100
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 1e-100
pfam00344340 pfam00344, SecY, SecY translocase 3e-93
PRK12907434 PRK12907, secY, preprotein translocase subunit Sec 8e-68
TIGR02920395 TIGR02920, acc_sec_Y2, accessory Sec system transl 1e-28
PRK12417404 PRK12417, secY, preprotein translocase subunit Sec 1e-25
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 5e-07
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information 
 Score =  396 bits (1019), Expect = e-136
 Identities = 160/422 (37%), Positives = 261/422 (61%), Gaps = 15/422 (3%)

Query: 8   FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 64
             + FK   L  + L  LG L + R+G YIP+ G++  A     DQ S  +L   + FSG
Sbjct: 5   LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSG 64

Query: 65  GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 124
           G + R  I +LGI+P+I A I+ QLL  + PKL++L+K EGEAGR+K+ QYTRY +V  A
Sbjct: 65  GALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLA 123

Query: 125 IVQAIGQVLYLRPY-------VNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGT 177
            VQ+IG    L                 + LT V  LT G+ F  ++GE+I++  +GNG 
Sbjct: 124 FVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGIGNGI 183

Query: 178 SLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPIN 236
           SL+IF  I++ LP++ G+T   A     + +    +I+ F+ ++  +V+V++A+R+IP+ 
Sbjct: 184 SLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243

Query: 237 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAA-LKKAAVAL 295
           YA R   R     +S+YLP KVN +GV+P+IF++S L  P T+A+F G  + L+  A  L
Sbjct: 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYL 303

Query: 296 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 355
           +PG   Y+    LLI FF ++YT +Q +P++++E LK+ G  IP +RPG+ TA +L  VL
Sbjct: 304 SPGSPLYILLYALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVL 363

Query: 356 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 415
           +R++++G+++LA +A  P +++    +     F GTS+LI+VG A DT ++++++++S++
Sbjct: 364 TRLTLVGAIYLAFIALLPEILQNALGV--PFYFGGTSLLIVVGVALDTMKQIESQLMSRQ 421

Query: 416 YK 417
           Y+
Sbjct: 422 YE 423

Length = 426
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2 Back     alignment and domain information
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 90.3
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.3e-102  Score=801.93  Aligned_cols=410  Identities=33%  Similarity=0.598  Sum_probs=353.3

Q ss_pred             hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHH
Q 014159            8 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV   86 (429)
Q Consensus         8 ~~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi   86 (429)
                      ++++++ +|+|+|++||++++++||+|+|||+||+|.++.+. .+++++++++|+|+||+++|+|+|+|||+|||||||+
T Consensus         5 ~~~~~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~-~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII   83 (434)
T PRK12907          5 ISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV-QDQANVLGMLNVFGGGALQHFSIFAVGITPYITASII   83 (434)
T ss_pred             HHhhhccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh-hhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHH
Confidence            355564 79999999999999999999999999999987652 2234589999999999999999999999999999999


Q ss_pred             HHHHhc-cchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-----cccchhHHHHHHHHHHHHHHH
Q 014159           87 FQLLAQ-INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV-----NDFSTDWVLTSVTLLTLGSAF  160 (429)
Q Consensus        87 ~QLl~~-~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~-----~~~~~~~~~~~vl~L~aGs~~  160 (429)
                      |||++. .+|+++|++| |||+||||+|+||||+|+++|++||++++..+....     .+.++..+++++++|++||++
T Consensus        84 ~QLL~~~~~p~l~~l~k-ege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~  162 (434)
T PRK12907         84 VQLLQMDVIPKFSEWAK-QGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAF  162 (434)
T ss_pred             HHHHHhccCccHHHHhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHH
Confidence            999964 7999999997 899999999999999999999999999887664211     112333456677999999999


Q ss_pred             HHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHh-hcCc-----hhHHHHHHHHHHHHHHHHHhhhccEEeee
Q 014159          161 TTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGN-----YIGLATIIISFILLVLGIVYVQEAERKIP  234 (429)
Q Consensus       161 l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~~~~v~~~~~~~rIP  234 (429)
                      ++||||+|||||+|||+|++|++||++++|+.+.+.+.... ..+.     ....++.+++++++++++|++|++|||||
T Consensus       163 l~WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~v~~~~rrIP  242 (434)
T PRK12907        163 LLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIP  242 (434)
T ss_pred             HHHHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHHHHHHHHHhheeeeeEEEE
Confidence            99999999999999999999999999999988876432111 1121     11112233444567788999999999999


Q ss_pred             eeecccccccCCCCC-CccccceeecccCChhHHHHHHhHhhHHHHHHhhcc-hHHHHHHHhcCCCCcchHHHHHHHHHH
Q 014159          235 INYASRYTSRSGGLQ-RSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI-AALKKAAVALNPGGSFYLPTNILLIAF  312 (429)
Q Consensus       235 i~~~~~~~~~~~~~~-~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~-~~~~~~~~~~~~~~~~y~~~y~~li~~  312 (429)
                      +||+||..+++.+.+ +++|+|+|+|+|||||+||||+++++|+++++++++ ++.++...++++++++|.++|++++++
T Consensus       243 i~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~  322 (434)
T PRK12907        243 IQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLIVA  322 (434)
T ss_pred             EEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            999999988776665 678999999999999999999999999999998754 333444555788888899999999999


Q ss_pred             HHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchh
Q 014159          313 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTS  392 (429)
Q Consensus       313 fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGts  392 (429)
                      |+|||+.+++||||+||||||+|+||||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+....+||||
T Consensus       323 Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~~~~~~~~gGTs  402 (434)
T PRK12907        323 FTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTS  402 (434)
T ss_pred             HHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999998777765334489999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCe
Q 014159          393 VLILVGCATDTARKVQAEIISQKYKNI  419 (429)
Q Consensus       393 lLI~V~v~~~~~~qi~~~~~~~~Y~~~  419 (429)
                      +||+|||++|++||+|+++.+++|+++
T Consensus       403 lLI~VgV~ldt~~qi~s~l~~~~Y~~~  429 (434)
T PRK12907        403 LLIIVGVALETMKTLESQLVKRHYKGF  429 (434)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998

>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3dl8_G429 Structure Of The Complex Of Aquifex Aeolicus Secyeg 2e-66
3din_C431 Crystal Structure Of The Protein-Translocation Comp 7e-59
2zjs_Y434 Crystal Structure Of Secye Translocon From Thermus 1e-50
3j01_A435 Structure Of The Ribosome-Secye Complex In The Memb 3e-50
2akh_Y400 Normal Mode-Based Flexible Fitted Coordinates Of A 1e-43
3bo0_A442 Ribosome-Secy Complex Length = 442 2e-10
>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/405 (36%), Positives = 234/405 (57%), Gaps = 17/405 (4%)
Query: 27  LALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 84
             + RLG +IP+ G+N EA    L   + S+ +  D FSGG +GRL + +LG++P+I+A 
Sbjct: 25  FVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISAS 84
Query: 85  IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-------- 136
           I+ QLL    P LQ L K EG+ GR K+ +YT+Y ++  A VQ++G   ++R        
Sbjct: 85  IMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGI 144
Query: 137 PYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRT 196
           P V +               G+ F  +I +RI++  +GNG SL+IF  I++  P +  + 
Sbjct: 145 PVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQ- 203
Query: 197 VAEAFQDGNYIGLATIIISFILLV---LGIVYVQEAERKIPINYASRYTSRSGGLQRSAY 253
             E  + G+ IG  T+++   L++   +GIVYVQEAER+IPI Y  R   R     R  Y
Sbjct: 204 FYEKVKTGD-IGPLTLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTY 262
Query: 254 LPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFF 313
           LP K+N +GV+PIIF+ + L +P TL  F     +K  A    PG  FY    +  I FF
Sbjct: 263 LPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFLYVTFIVFF 322
Query: 314 NYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGP 373
            Y+YT + ++P +++E L + GA IP VRPG+ T  +L+ +++R+   G++FL+++A  P
Sbjct: 323 TYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIP 382
Query: 374 AVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKN 418
            +I    ++  +  F GT+ LI+VG A DT R+++  +I +KYK+
Sbjct: 383 ILISVWFNIPFY--FGGTTALIVVGVALDTFRQIETYLIQKKYKS 425
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 431 Back     alignment and structure
>pdb|2ZJS|Y Chain Y, Crystal Structure Of Secye Translocon From Thermus Thermophilus With A Fab Fragment Length = 434 Back     alignment and structure
>pdb|3J01|A Chain A, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 435 Back     alignment and structure
>pdb|2AKH|Y Chain Y, Normal Mode-Based Flexible Fitted Coordinates Of A Non- Translocating Secyeg Protein-Conducting Channel Into The Cryo-Em Map Of A Secyeg-Nascent Chain-70s Ribosome Complex From E. Coli Length = 400 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 1e-133
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 1e-128
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 1e-128
3din_C431 Preprotein translocase subunit SECY; protein trans 1e-125
1rh5_A436 Preprotein translocase SECY subunit; protein trans 2e-83
3mp7_A482 Preprotein translocase subunit SECY; protein trans 5e-79
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-49
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 1e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
 Score =  389 bits (1003), Expect = e-133
 Identities = 154/422 (36%), Positives = 240/422 (56%), Gaps = 14/422 (3%)

Query: 8   FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 64
               F+   L  KF+  L    + RLG +IP+ G+N EA    L      + +  D FSG
Sbjct: 5   LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSG 64

Query: 65  GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 124
           G +GRL + +LG++P+I+A I+ QLL    P LQ L K EG+ GR K+ +YT+Y ++  A
Sbjct: 65  GNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVA 124

Query: 125 IVQAIGQVLYLR--------PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNG 176
            VQ++G   ++R        P V +    ++L +V  L  G+ F  +I +RI++  +GNG
Sbjct: 125 TVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNG 184

Query: 177 TSLLIFTSIISYLPASFGRTVAEAFQ-DGNYIGLATIIISFILLVLGIVYVQEAERKIPI 235
            SL+IF  I++  P +  +   +    D   + L  II   I +++GIVYVQEAER+IPI
Sbjct: 185 ASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRIPI 244

Query: 236 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVAL 295
            Y  R   R     R  YLP K+N +GV+PIIF+ + L +P TL  F     +K  A   
Sbjct: 245 QYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMF 304

Query: 296 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 355
            PG  FY    +  I FF Y+YT + ++P +++E L + GA IP VRPG+ T  +L+ ++
Sbjct: 305 QPGAIFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERII 364

Query: 356 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 415
           +R+   G++FL+++A  P +I    ++  +  F GT+ LI+VG A DT R+++  +I +K
Sbjct: 365 NRLIFFGALFLSVIALIPILISVWFNIPFY--FGGTTALIVVGVALDTFRQIETYLIQKK 422

Query: 416 YK 417
           YK
Sbjct: 423 YK 424
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
Probab=100.00  E-value=1.2e-106  Score=832.20  Aligned_cols=410  Identities=32%  Similarity=0.527  Sum_probs=355.1

Q ss_pred             hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhccc--chhHHHHHhhcCCCCccchhhhcCchHHHHHH
Q 014159            8 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ   84 (429)
Q Consensus         8 ~~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~--~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAs   84 (429)
                      ++|+|| +|+|+|++||++++++||+|+|||+||+|.++.++.+++  +++++++|+|+||+++|+|+|||||+||||||
T Consensus         5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS   84 (434)
T 2zjs_Y            5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA   84 (434)
T ss_dssp             HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred             HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence            457776 599999999999999999999999999999988764332  46889999999999999999999999999999


Q ss_pred             HHHHHHhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c-cc----cc--cchhHHHHHHHHHHH
Q 014159           85 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-P-YV----ND--FSTDWVLTSVTLLTL  156 (429)
Q Consensus        85 Ii~QLl~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~-~-~~----~~--~~~~~~~~~vl~L~a  156 (429)
                      |+||||+.++|.++|++| |||+||||+|++|||+|+++|++||++++.+++ . ++    .+  ++..+.++++++|++
T Consensus        85 II~QLL~~vip~l~~l~k-eGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a  163 (434)
T 2zjs_Y           85 IIMQILVTVVPALEKLSK-EGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA  163 (434)
T ss_dssp             HHHHHHHHHSHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence            999999988999999986 999999999999999999999999999998763 2 12    23  444466788999999


Q ss_pred             HHHHHHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHHHHhhhccEEeeee
Q 014159          157 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPI  235 (429)
Q Consensus       157 Gs~~l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi  235 (429)
                      ||+++|||||+|||||+|||+|++|++||++++|+.+.+.++....+ .++..++..+++++++++++||+|++||||||
T Consensus       164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~vV~~~~~~rrIPv  243 (434)
T 2zjs_Y          164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV  243 (434)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred             HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHheeeEEEEee
Confidence            99999999999999999999999999999999999988777533221 14444445566778888999999999999999


Q ss_pred             eecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhc-chHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 014159          236 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-IAALKKAAVALNPGGSFYLPTNILLIAFFN  314 (429)
Q Consensus       236 ~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~-~~~~~~~~~~~~~~~~~y~~~y~~li~~fs  314 (429)
                      ||+||.+||+.++++++|+|+|+|+|||||+|||+|++++|++++++++ ++|.+...++++|++|+|.++|++++++||
T Consensus       244 qyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs  323 (434)
T 2zjs_Y          244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVILFT  323 (434)
T ss_dssp             EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            9999999999888999999999999999999999999999999999764 456666777889999999999999999999


Q ss_pred             HHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhH
Q 014159          315 YYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVL  394 (429)
Q Consensus       315 ~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslL  394 (429)
                      |||+++++||||+||||||||+||||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+. .++||||+|
T Consensus       324 ~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~-~~~gGTslL  402 (434)
T 2zjs_Y          324 YVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHS-IAFSGIGLL  402 (434)
T ss_dssp             HHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC-GGGSSHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccc-ccccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999865434422 237999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCCe
Q 014159          395 ILVGCATDTARKVQAEIISQKYKNI  419 (429)
Q Consensus       395 I~V~v~~~~~~qi~~~~~~~~Y~~~  419 (429)
                      |+|||++|++||+|+++.+|+|+++
T Consensus       403 I~VgV~ldt~~qi~s~~~~~~Y~~~  427 (434)
T 2zjs_Y          403 IVVGVALDTLRQVESQLMLRSYEGF  427 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999998
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 429
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 8e-57
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  190 bits (485), Expect = 8e-57
 Identities = 67/431 (15%), Positives = 133/431 (30%), Gaps = 62/431 (14%)

Query: 13  KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGI 72
           +     K       L L  +   I +     +         ++     + +        +
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-------PAIFEFWQTITASR--IGTL 69

Query: 73  CSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV 132
            +LGI P + A I+ QLL      +  +        R       +  S+    V+A+  V
Sbjct: 70  ITLGIGPIVTAGIIMQLLVG--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFV 126

Query: 133 LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS 192
                 +      +++  +  +  GS    Y+ E +S   +G+G  L I   +   +   
Sbjct: 127 GAGAFGILTPLLAFLV--IIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVG 184

Query: 193 -------FGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRS 245
                    + +    Q    I     II  I++ L +VY +    +IP+ +        
Sbjct: 185 ALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK---- 240

Query: 246 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR------------FTGIAALKKAAV 293
                    P K      +P+I + +  A                   + G  A+   A 
Sbjct: 241 ---GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY 297

Query: 294 ALNPGGSFYLPTNILL-------------IAFFNYYYTFLQLDPDDVSEQLKRQGASIPL 340
            L+         +  +             + F  ++     LDP  +++++   G +I  
Sbjct: 298 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKG 357

Query: 341 VRPGKSTAA-FLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGC 399
            R  +      LK  +  ++V+ S F+  LA     I             GT VL+ V  
Sbjct: 358 FRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGAL--------GGGTGVLLTVSI 409

Query: 400 ATDTARKVQAE 410
                 ++  E
Sbjct: 410 VYRMYEQLLRE 420

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=7.2e-89  Score=700.03  Aligned_cols=370  Identities=19%  Similarity=0.187  Sum_probs=296.4

Q ss_pred             hcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHh
Q 014159           12 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA   91 (429)
Q Consensus        12 ~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~   91 (429)
                      .|.++|||++||++++++||+|+|||+||+|.+..       +.+.+++.++|++  ++|+|+|||+|||||||+||||+
T Consensus        18 ~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-------~~~~~~~~~~a~~--~~Sif~LGI~PyItASIImQLL~   88 (422)
T d1rh5a_          18 KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-------AIFEFWQTITASR--IGTLITLGIGPIVTAGIIMQLLV   88 (422)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-------SCCTTHHHHHTCC--TTBTTTTTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-------cHHHHHHHHhccc--cccHHHhChHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999987653       2234566666765  88999999999999999999998


Q ss_pred             ccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014159           92 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDL  171 (429)
Q Consensus        92 ~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~it~~  171 (429)
                      .  |+++|+++ |||+||||+|++||++|+++|++||++++.....  .+.+....++++++|++|++++|||||+||||
T Consensus        89 ~--~~l~~~~~-~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~--~~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~  163 (422)
T d1rh5a_          89 G--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAF--GILTPLLAFLVIIQIAFGSIILIYLDEIVSKY  163 (422)
T ss_dssp             H--HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--hhHHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6  89999987 8999999999999999999999999998876532  23445566778899999999999999999999


Q ss_pred             cCCCchhHHHHHHHhhhchHHHHH-------HHHHHhh-cCchhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccc
Q 014159          172 KLGNGTSLLIFTSIISYLPASFGR-------TVAEAFQ-DGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTS  243 (429)
Q Consensus       172 GiGnG~SliI~~~I~~~lp~~i~~-------~~~~~~~-~~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~  243 (429)
                      |+|||+|++|++||++++|+...+       ....... ..++.. +..++.+++++++++|+|++|||||+||+|+.  
T Consensus       164 GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~i~~~vv~~~~~~~~IPv~~~~~~--  240 (422)
T d1rh5a_         164 GIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY-IAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK--  240 (422)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG-THHHHHHHHHHHHHHHHTTCEEEEECCCSSST--
T ss_pred             CcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccccc--
Confidence            999999999999999999865422       1111111 122333 33456667778889999999999999998743  


Q ss_pred             cCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc------------hHHHHHHHhcCC--------C----C
Q 014159          244 RSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI------------AALKKAAVALNP--------G----G  299 (429)
Q Consensus       244 ~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~------------~~~~~~~~~~~~--------~----~  299 (429)
                           +.++|+|+|+|++|+||+|||++++++|+++++++++            .+.+...+++++        .    .
T Consensus       241 -----~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~  315 (422)
T d1rh5a_         241 -----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHA  315 (422)
T ss_dssp             -----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHH
T ss_pred             -----ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchHHHHHHHhCCcchhhccccCccch
Confidence                 4688999999999999999999999999999887521            111112333322        1    1


Q ss_pred             cchHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHcCCccccccCChhHH-HHHHHHHhHHHHHhHHHHHHHHHhHHHHH
Q 014159          300 SFYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKSTA-AFLKTVLSRISVLGSVFLAILAAGPAVIE  377 (429)
Q Consensus       300 ~~y~~~y~~li~~fs~~~~~i-~~~p~~iAe~Lkk~g~~IpGirpG~~T~-~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~  377 (429)
                      ++|.++|.++|++|++||+.+ ++||||+||||||||++|||+||||+|. +||+|+++|+|++||+|++++|++|++++
T Consensus       316 ~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~  395 (422)
T d1rh5a_         316 IVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG  395 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788889999999999988 6999999999999999999999999995 56999999999999999999999999876


Q ss_pred             HhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 014159          378 QTTHLTAFRGFAGTSVLILVGCATDTARKVQAEI  411 (429)
Q Consensus       378 ~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~  411 (429)
                            ..  +||||+||+||+++|++||+++|+
T Consensus       396 ------~~--~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         396 ------AL--GGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             ------CT--TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ------Hh--cchHHHHHHHHHHHHHHHHHHHhh
Confidence                  33  689999999999999999999875