Citrus Sinensis ID: 014226

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
ccccccccccEEEEEccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEEEEccccccccccEEEccccccccccccccccccccccccccEEEEccEEEEccccccccEEEEEEEEccccccccccHHHHHHHHHHHccccccccEEEccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccc
ccEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEEHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEcccccEEEEcccHHHcccccccccccccccccHHHHHHHHHHEEccccccHHHHHHHHHHHHcc
maqilapsmqwqmrmpkysniaspmTTKMWSSLLMKQnkkgtnrssAKFRVLALKSEDSTVNRLEDllnlditpytdKIIAEYIWIggtgidmrskskpvehpselpkwnydgsstgqapgedsevilypqaifkdpfrggnniLVICdtytpagepiptnkrhrAAEIfsnskvsaevpwfgIEQEYTLLQQnvkwplgwpvgaypgpqgpyycgagadksfgrdIADAHYKACLYAGinisgtngevmpgqweyqvgpsvgidagdhiWCSRYLLERITEQAGvvlsldpkpiegdwngagchtnystksmreeggYETIKKAILNLSLRHKEHISaygegnerrltgkhetasidSFSWgvanrgcsirvgretekqgkgyledrrpasnmdpYVVTSLLAETTILWEPTLEAEALAAQKLALNV
maqilapsmqwqMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLalksedstvnrledllnlditpytDKIIAEYIWIGGTGIDMRSKSKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDpkpiegdwngagCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAygegnerrltGKHETasidsfswgvanrgcsirvgretekqgkgyledrrpasnmDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTleaealaaqklalNV
**************************************************VLAL****STVNRLEDLLNLDITPYTDKIIAEYIWIGGTGID*********************************VILYPQAIFKDPFRGGNNILVICDTYTPAGEPI******RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK****EGGYETIKKAILNLSLRHKEHISAYG*************ASIDSFSWGVANRGCSIRVG********************DPYVVTSLLAETTILWEPTLEAEAL*********
********MQWQM*****************************************************LLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMR*********SELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
*AQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKK********FRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELPKWNYDGSST****GEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKL**N*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
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MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query428 2.2.26 [Sep-21-2011]
O22506432 Glutamine synthetase, chl N/A no 1.0 0.990 0.870 0.0
P15102429 Glutamine synthetase leaf N/A no 0.992 0.990 0.886 0.0
P08281430 Glutamine synthetase leaf N/A no 0.995 0.990 0.858 0.0
Q9XQ94428 Glutamine synthetase leaf N/A no 0.990 0.990 0.854 0.0
Q43127430 Glutamine synthetase, chl yes no 0.995 0.990 0.844 0.0
Q42624428 Glutamine synthetase, chl N/A no 0.990 0.990 0.828 0.0
P14655428 Glutamine synthetase, chl yes no 0.988 0.988 0.780 0.0
P25462423 Glutamine synthetase, chl N/A no 0.941 0.952 0.763 0.0
P13564434 Glutamine synthetase leaf N/A no 0.864 0.852 0.824 0.0
Q42899356 Glutamine synthetase cyto N/A no 0.815 0.980 0.793 1e-173
>sp|O22506|GLNA2_DAUCA Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1 Back     alignment and function desciption
 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/432 (87%), Positives = 404/432 (93%), Gaps = 4/432 (0%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS+QWQMR  K S   S MT+KMW SL +KQNKK   RSS K+R LA+KSED T
Sbjct: 1   MAQILAPSVQWQMRFTKNSTEVSSMTSKMWGSLFLKQNKKAPARSSTKYRALAVKSEDGT 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKS----KPVEHPSELPKWNYDGSST 116
           +NR+EDLLNLD+TPYTDKIIAEYIWIGGTGID+RSKS    KPVEHPSELPKWNYDGSST
Sbjct: 61  INRMEDLLNLDVTPYTDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSST 120

Query: 117 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 176
           GQAPG+DSEVILYPQAIFKDPFRGGNNILVICDTYTP GEPIPTNKRH+AA+IFS++KV 
Sbjct: 121 GQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIFSDAKVL 180

Query: 177 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 236
            EVPWFGIEQEYTL+QQ+V WPLGW VG YPGPQGPYYC AGADKSFGRDI+DAHYKACL
Sbjct: 181 GEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACL 240

Query: 237 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 296
           YAGINISGTNGEVMPGQWE+QVGPSVGI+AGDHIWC+RYLLERITEQAGVVL+LDPKPI+
Sbjct: 241 YAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPID 300

Query: 297 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 356
           GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 357 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEA 416
           IDSFSWGVA+RGCSIRVGR+TEK+GKGYLEDRRPASNMDPYVVT LLAETT+LWEPTLEA
Sbjct: 361 IDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEPTLEA 420

Query: 417 EALAAQKLALNV 428
           EALAAQKL+LNV
Sbjct: 421 EALAAQKLSLNV 432
The light-modulated chloroplast enzyme, encoded by a nuclear gene and expressed primarily in leaves, is responsible for the reassimilation of the ammonia generated by photorespiration.
Daucus carota (taxid: 4039)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2
>sp|P15102|GLNA4_PHAVU Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description
>sp|P08281|GLNA2_PEA Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2 Back     alignment and function description
>sp|Q9XQ94|GLNA2_MEDSA Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43127|GLNA2_ARATH Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1 Back     alignment and function description
>sp|Q42624|GLNAC_BRANA Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1 Back     alignment and function description
>sp|P14655|GLNA2_ORYSJ Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1 Back     alignment and function description
>sp|P25462|GLNAC_MAIZE Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1 Back     alignment and function description
>sp|P13564|GLNA2_HORVU Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2 Back     alignment and function description
>sp|Q42899|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
224107259432 predicted protein [Populus trichocarpa] 1.0 0.990 0.895 0.0
255551511432 glutamine synthetase plant, putative [Ri 1.0 0.990 0.900 0.0
224102579432 predicted protein [Populus trichocarpa] 1.0 0.990 0.893 0.0
40457328432 glutamine synthetase GS58 [Nicotiana att 1.0 0.990 0.884 0.0
193290696432 putative glutamine synthase 2 [Capsicum 1.0 0.990 0.881 0.0
225432496432 PREDICTED: glutamine synthetase leaf iso 1.0 0.990 0.888 0.0
300678122429 plastid glutamine synthetase [Vigna radi 0.992 0.990 0.888 0.0
8928128432 RecName: Full=Glutamine synthetase, chlo 1.0 0.990 0.870 0.0
356555606432 PREDICTED: glutamine synthetase leaf iso 1.0 0.990 0.884 0.0
121353429 RecName: Full=Glutamine synthetase leaf 0.992 0.990 0.886 0.0
>gi|224107259|ref|XP_002314425.1| predicted protein [Populus trichocarpa] gi|222863465|gb|EEF00596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/432 (89%), Positives = 409/432 (94%), Gaps = 4/432 (0%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS QWQMR+ K S  A PMT KMWSSL++KQNKKG  +SSAKFRV ALKSE+ST
Sbjct: 1   MAQILAPSSQWQMRIAKNSAPACPMTAKMWSSLVLKQNKKGIAKSSAKFRVFALKSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKS----KPVEHPSELPKWNYDGSST 116
           +NR+EDLLNLD+TPYTDK IAEYIWIGG+GID+RSKS    KP+EHPSELPKWNYDGSST
Sbjct: 61  INRMEDLLNLDLTPYTDKFIAEYIWIGGSGIDLRSKSRTISKPIEHPSELPKWNYDGSST 120

Query: 117 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 176
           GQAPGEDSEVILYPQAIFKDPFRGGNNILV+CDTYTP GEPIPTNKRHRAAEIFSN KV 
Sbjct: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPQGEPIPTNKRHRAAEIFSNKKVI 180

Query: 177 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 236
            EVPWFGIEQEYTLLQ NVKWPLGWPVG YPGPQGPYYCGAGADKSFGRDI+DAHYKAC+
Sbjct: 181 DEVPWFGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCGAGADKSFGRDISDAHYKACM 240

Query: 237 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 296
           YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIW SRY+LERITEQAGVVLSLDPKPIE
Sbjct: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWISRYILERITEQAGVVLSLDPKPIE 300

Query: 297 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 356
           GDWNGAGCHTNYSTK+MREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKTMREEGGFEAIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 357 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEA 416
           ID+FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPY+VTSLLAETTIL+EPTLEA
Sbjct: 361 IDTFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYIVTSLLAETTILYEPTLEA 420

Query: 417 EALAAQKLALNV 428
           EALAAQKL++NV
Sbjct: 421 EALAAQKLSMNV 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551511|ref|XP_002516801.1| glutamine synthetase plant, putative [Ricinus communis] gi|223543889|gb|EEF45415.1| glutamine synthetase plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224102579|ref|XP_002312733.1| predicted protein [Populus trichocarpa] gi|118486227|gb|ABK94955.1| unknown [Populus trichocarpa] gi|222852553|gb|EEE90100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|40457328|gb|AAR86719.1| glutamine synthetase GS58 [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|193290696|gb|ACF17656.1| putative glutamine synthase 2 [Capsicum annuum] Back     alignment and taxonomy information
>gi|225432496|ref|XP_002279497.1| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera] gi|297736964|emb|CBI26165.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|300678122|gb|ADK27329.1| plastid glutamine synthetase [Vigna radiata] Back     alignment and taxonomy information
>gi|8928128|sp|O22506.1|GLNA2_DAUCA RecName: Full=Glutamine synthetase, chloroplastic; AltName: Full=GS2; AltName: Full=Glutamate--ammonia ligase; Flags: Precursor gi|2454633|gb|AAB71693.1| glutamine synthetase [Daucus carota] Back     alignment and taxonomy information
>gi|356555606|ref|XP_003546121.1| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|121353|sp|P15102.1|GLNA4_PHAVU RecName: Full=Glutamine synthetase leaf isozyme, chloroplastic; AltName: Full=Glutamate--ammonia ligase; AltName: Full=Isozyme delta; Flags: Precursor gi|21005|emb|CAA31234.1| unnamed protein product [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
TAIR|locus:2165897430 GS2 "glutamine synthetase 2" [ 0.995 0.990 0.817 1.8e-197
TAIR|locus:2151739356 GSR 1 "glutamine synthase clon 0.815 0.980 0.796 5.7e-162
TAIR|locus:2174175356 GLN1;4 "glutamine synthetase 1 0.822 0.988 0.778 7.5e-160
TAIR|locus:2088580354 GLN1.3 "glutamine synthetase 1 0.808 0.977 0.762 2.8e-153
TAIR|locus:2198080353 GLN1;5 "glutamine synthetase 1 0.806 0.977 0.722 5.5e-148
FB|FBgn0001145369 Gs2 "Glutamine synthetase 2" [ 0.829 0.962 0.571 6.1e-110
UNIPROTKB|G4NG12358 MGG_14279 "Glutamine synthetas 0.792 0.946 0.565 3.9e-108
ASPGD|ASPL0000016342357 glnA [Emericella nidulans (tax 0.808 0.969 0.563 8.1e-108
WB|WBGene00001604388 gln-3 [Caenorhabditis elegans 0.820 0.904 0.557 6.5e-106
SGD|S000006239370 GLN1 "Glutamine synthetase (GS 0.785 0.908 0.559 1.6e-104
TAIR|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1912 (678.1 bits), Expect = 1.8e-197, P = 1.8e-197
 Identities = 353/432 (81%), Positives = 389/432 (90%)

Query:     1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
             MAQILA S   QMR+PK+S++ +  ++K+WSS+++KQ K+  N+    FRVLAL+S++ST
Sbjct:     1 MAQILAASPTCQMRVPKHSSVIAS-SSKLWSSVVLKQKKQSNNKVRG-FRVLALQSDNST 58

Query:    61 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKS----KPVEHPSELPKWNYDGSST 116
             VNR+E LLNLD  PY+D+IIAEYIWIGG+GID+RSKS    KPVE PSELPKWNYDGSST
Sbjct:    59 VNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSST 118

Query:   117 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 176
             GQAPGEDSEVILYPQAIF+DPFRGGNNILVICDT+TPAGEPIPTNKR +AAEIFSN KVS
Sbjct:   119 GQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVS 178

Query:   177 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 236
              EVPWFGIEQEYTLLQQNVKWPLGWPVGA+PGPQGPYYCG GADK +GRDI+DAHYKACL
Sbjct:   179 GEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACL 238

Query:   237 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 296
             YAGINISGTNGEVMPGQWE+QVGPSVGIDAGDH+WC+RYLLERITEQAGVVL+LDPKPIE
Sbjct:   239 YAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIE 298

Query:   297 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 356
             GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct:   299 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 358

Query:   357 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTXXX 416
             ID FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY+VTSLLAETT+LWEPT   
Sbjct:   359 IDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEPTLEA 418

Query:   417 XXXXXXXXXXNV 428
                       NV
Sbjct:   419 EALAAQKLSLNV 430
GO:0003824 "catalytic activity" evidence=IEA
GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA;TAS
GO:0006542 "glutamine biosynthetic process" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA;NAS
GO:0007568 "aging" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019676 "ammonia assimilation cycle" evidence=TAS
GO:0009579 "thylakoid" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00001604 gln-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43127GLNA2_ARATH6, ., 3, ., 1, ., 20.84490.99530.9906yesno
P14654GLN12_ORYSJ6, ., 3, ., 1, ., 20.78120.81300.9747nono
P00965GLNA3_PHAVU6, ., 3, ., 1, ., 20.76120.82240.9887N/Ano
P14656GLN11_ORYSJ6, ., 3, ., 1, ., 20.78750.81540.9803nono
P08281GLNA2_PEA6, ., 3, ., 1, ., 20.85870.99530.9906N/Ano
Q43785GLNA3_MEDSA6, ., 3, ., 1, ., 20.77900.81540.9803N/Ano
P14655GLNA2_ORYSJ6, ., 3, ., 1, ., 20.78060.98830.9883yesno
P23712GLNA_LACSA6, ., 3, ., 1, ., 20.78970.81300.9720N/Ano
Q9FMD9GLN14_ARATH6, ., 3, ., 1, ., 20.77800.82240.9887nono
Q9LVI8GLN13_ARATH6, ., 3, ., 1, ., 20.76280.80840.9774nono
Q43066GLNA4_PEA6, ., 3, ., 1, ., 20.77180.82000.9831N/Ano
P25462GLNAC_MAIZE6, ., 3, ., 1, ., 20.76310.94150.9527N/Ano
P12424GLNA_NICPL6, ., 3, ., 1, ., 20.77420.80840.9719N/Ano
Q8LCE1GLN12_ARATH6, ., 3, ., 1, ., 20.80450.81540.9803nono
P38560GLNA2_MAIZE6, ., 3, ., 1, ., 20.74290.81540.9483N/Ano
P15102GLNA4_PHAVU6, ., 3, ., 1, ., 20.88650.99290.9906N/Ano
O82560GLNA2_SOYBN6, ., 3, ., 1, ., 20.76480.81540.9803nono
O22506GLNA2_DAUCA6, ., 3, ., 1, ., 20.87031.00.9907N/Ano
P38563GLNA5_MAIZE6, ., 3, ., 1, ., 20.78400.81300.9747N/Ano
O22504GLNA1_DAUCA6, ., 3, ., 1, ., 20.76500.80840.9829N/Ano
P38561GLNA3_MAIZE6, ., 3, ., 1, ., 20.77050.81540.9803N/Ano
O04867GLNA1_ALNGL6, ., 3, ., 1, ., 20.79880.81540.9803N/Ano
P14636GLNA3_LUPAN6, ., 3, ., 1, ., 20.75640.71960.9777N/Ano
Q42624GLNAC_BRANA6, ., 3, ., 1, ., 20.82870.99060.9906N/Ano
P08282GLNA1_PEA6, ., 3, ., 1, ., 20.77330.81540.9830N/Ano
Q56WN1GLN11_ARATH6, ., 3, ., 1, ., 20.79600.81540.9803nono
Q4W8D0GLN13_ORYSJ6, ., 3, ., 1, ., 20.74290.81770.9459nono
P51118GLNA1_VITVI6, ., 3, ., 1, ., 20.79320.81540.9803nono
P51119GLNA2_VITVI6, ., 3, ., 1, ., 20.79030.81540.9803nono
P38562GLNA4_MAIZE6, ., 3, ., 1, ., 20.77050.81300.9802N/Ano
P13564GLNA2_HORVU6, ., 3, ., 1, ., 20.8240.86440.8525N/Ano
P52782GLNA_LUPLU6, ., 3, ., 1, ., 20.77710.80840.9801N/Ano
P52783GLNA_PINSY6, ., 3, ., 1, ., 20.76200.81540.9775N/Ano
P24099GLNA1_SOYBN6, ., 3, ., 1, ., 20.76770.81300.9802nono
P20478GLNA2_DROME6, ., 3, ., 1, ., 20.56830.82940.9620yesno
Q9XQ94GLNA2_MEDSA6, ., 3, ., 1, ., 20.85410.99060.9906N/Ano
Q42899GLNA1_LOTJA6, ., 3, ., 1, ., 20.79320.81540.9803N/Ano
P38559GLNA1_MAIZE6, ., 3, ., 1, ., 20.79200.81070.9719N/Ano
P04078GLNA1_MEDSA6, ., 3, ., 1, ., 20.79320.81540.9803N/Ano
P32289GLNA_VIGAC6, ., 3, ., 1, ., 20.78750.81540.9803N/Ano
Q42688GLNA1_CHLRE6, ., 3, ., 1, ., 20.59350.81540.9136N/Ano
Q86ZF9GLNA_NEUCR6, ., 3, ., 1, ., 20.55950.82000.9696N/Ano
P07694GLNA3_PEA6, ., 3, ., 1, ., 20.77460.82000.9831N/Ano
Q06378GLNA3_HORVU6, ., 3, ., 1, ., 20.76240.78730.9466N/Ano
P04770GLNA1_PHAVU6, ., 3, ., 1, ., 20.78180.81540.9803N/Ano
P04771GLNA2_PHAVU6, ., 3, ., 1, ., 20.78180.81540.9803N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.10.998
3rd Layer6.3.1.20.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X4165
glutamine synthetase (432 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.184.28.1
malate dehydrogenase (213 aa)
      • 0.508
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
      • 0.508
fgenesh4_pm.C_LG_I001100
malate dehydrogenase (EC-1.1.1.37) (356 aa)
      • 0.508
fgenesh4_pg.C_LG_IV000431
malate dehydrogenase (EC-1.1.1.37) (348 aa)
      • 0.508
eugene3.00081537
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
      • 0.508
eugene3.00021311
hypothetical protein (334 aa)
      • 0.508
eugene3.00021309
malate dehydrogenase (EC-1.1.1.37) (332 aa)
      • 0.508
estExt_fgenesh4_pg.C_LG_XI0680
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (341 aa)
      • 0.508
estExt_fgenesh4_pg.C_LG_VII1232
malate dehydrogenase (EC-1.1.1.37) (355 aa)
      • 0.508
estExt_Genewise1_v1.C_LG_I4975
malate dehydrogenase (EC-1.1.1.37) (340 aa)
      • 0.508

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
PLN03036432 PLN03036, PLN03036, glutamine synthetase; Provisio 0.0
PLN02284354 PLN02284, PLN02284, glutamine synthetase 0.0
pfam00120259 pfam00120, Gln-synt_C, Glutamine synthetase, catal 3e-82
COG0174443 COG0174, GlnA, Glutamine synthetase [Amino acid tr 4e-65
pfam0395184 pfam03951, Gln-synt_N, Glutamine synthetase, beta- 7e-19
TIGR00653459 TIGR00653, GlnA, glutamine synthetase, type I 1e-13
COG3968 724 COG3968, COG3968, Uncharacterized protein related 9e-05
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional Back     alignment and domain information 
 Score =  886 bits (2290), Expect = 0.0
 Identities = 392/432 (90%), Positives = 415/432 (96%), Gaps = 4/432 (0%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS Q QMR+PK S +A+PMT+K+WSSL++KQ KKGT + S KFRVLAL+SE+ST
Sbjct: 1   MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKS----KPVEHPSELPKWNYDGSST 116
           VNR+EDLLNLD TPYTD+IIAEYIWIGG+GID+RSKS    KPVEHPSELPKWNYDGSST
Sbjct: 61  VNRVEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSST 120

Query: 117 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 176
           GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSN KV 
Sbjct: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVV 180

Query: 177 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 236
            EVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDI+DAHYKACL
Sbjct: 181 DEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL 240

Query: 237 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 296
           YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRY+LERITEQAGVVL+LDPKPIE
Sbjct: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE 300

Query: 297 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 356
           GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 357 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEA 416
           ID+FSWGVANRGCSIRVGR+TEK+GKGYLEDRRPASNMDPY+VTSLLAETTILWEPTLEA
Sbjct: 361 IDTFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTILWEPTLEA 420

Query: 417 EALAAQKLALNV 428
           EALAAQKL+LNV
Sbjct: 421 EALAAQKLSLNV 432

Length = 432
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase Back     alignment and domain information
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain Back     alignment and domain information
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain Back     alignment and domain information
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I Back     alignment and domain information
>gnl|CDD|226477 COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 428
PLN03036432 glutamine synthetase; Provisional 100.0
PLN02284354 glutamine synthetase 100.0
COG0174443 GlnA Glutamine synthetase [Amino acid transport an 100.0
TIGR00653460 GlnA glutamine synthetase, type I. Alternate name: 100.0
PRK09469469 glnA glutamine synthetase; Provisional 100.0
TIGR03105435 gln_synth_III glutamine synthetase, type III. This 100.0
PF00120259 Gln-synt_C: Glutamine synthetase, catalytic domain 100.0
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 100.0
COG3968 724 Uncharacterized protein related to glutamine synth 99.7
PF0395184 Gln-synt_N: Glutamine synthetase, beta-Grasp domai 99.5
TIGR02050287 gshA_cyan_rel uncharacterized enzyme. This family 98.63
PRK13517 373 carboxylate-amine ligase; Provisional 98.62
PRK13515 371 carboxylate-amine ligase; Provisional 98.46
PRK13516373 gamma-glutamyl:cysteine ligase; Provisional 98.39
PLN02611 482 glutamate--cysteine ligase 98.07
PRK13518 357 carboxylate-amine ligase; Provisional 98.06
TIGR01436 446 glu_cys_lig_pln glutamate--cysteine ligase, plant 97.52
PF04107288 GCS2: Glutamate-cysteine ligase family 2(GCS2); In 97.51
TIGR02048 376 gshA_cyano glutamate--cysteine ligase, cyanobacter 97.45
COG2170369 Uncharacterized conserved protein [Function unknow 97.17
TIGR03444 390 gshA_related glutamate--cysteine ligase family pro 96.6
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 86.68
PF06877104 RraB: Regulator of ribonuclease activity B; InterP 84.66
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 80.25
>PLN03036 glutamine synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-111  Score=863.63  Aligned_cols=428  Identities=91%  Similarity=1.479  Sum_probs=393.3

Q ss_pred             CccccCcccceeeecccccCCCCCchhhhhhhHHHHHhhccCcccCcceEEEEeccCchHHHHHHHHHhcCCCCCCCEEE
Q 014226            1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKII   80 (428)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~v~   80 (428)
                      |||||+||+||||||+|.++.++|+++++|+|+++||.|++..+...+|+.+++++..+.+..+++|++.+..++.+.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (432)
T PLN03036          1 MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENSTVNRVEDLLNLDTTPYTDRII   80 (432)
T ss_pred             CCcccccccccccCCCCCCCcccccccceecccchhhhhhhhhhcccceeeeeccccchhhhhHHHHhhhcccccCCeEE
Confidence            99999999999999999999999999999999999999998766788999999887665677788888887667889999


Q ss_pred             EEEEeecCCCCceeeccc----cCCCCCCCCcccccCCCCCCCCCCCCceeeeeeeeeecCCCCCCeEEEEEEEecCCCC
Q 014226           81 AEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE  156 (428)
Q Consensus        81 ~~~~d~~G~G~~lR~K~v----p~~~~~~l~~~~fdgs~~g~~~~~~~D~~l~PD~~~~~Pw~~~~~a~Vlcd~~~~dG~  156 (428)
                      ++|+|+||.|..+|||..    |++++++++.|+||||++|+.+++++|++|+||.++++||+++++++|+||++++||+
T Consensus        81 ~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~Vlcd~y~~dG~  160 (432)
T PLN03036         81 AEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE  160 (432)
T ss_pred             EEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEEEEEEECCCCC
Confidence            999999999988999984    5667888888999999999998899999999999999999876789999999999999


Q ss_pred             CCCCCHHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHH
Q 014226          157 PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL  236 (428)
Q Consensus       157 P~~~~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~  236 (428)
                      |++.|||++|++++++++..|+++++|+|+|||||+.+..++.||+.+..|.++++||+..+.+..+.++++++++++|+
T Consensus       161 P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~  240 (432)
T PLN03036        161 PIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL  240 (432)
T ss_pred             CCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865444556665557778899998887777778999999999999


Q ss_pred             HcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCC
Q 014226          237 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREE  316 (428)
Q Consensus       237 ~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~  316 (428)
                      ++||+|+++|+|+|||||||++.|+++|++||++++||++||+||++||++|||||||+.++++|||||+|+||++.+++
T Consensus       241 ~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~GSGmHiH~Sl~d~r~~  320 (432)
T PLN03036        241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREE  320 (432)
T ss_pred             HCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCCCCceeEechhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999998754799999999999985544


Q ss_pred             CchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCH
Q 014226          317 GGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDP  396 (428)
Q Consensus       317 ~g~~~~~~fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNP  396 (428)
                      +|.+.++++++|++|+|+++++||++||||||+|++|||.|.+++||++||+++||||......+++|||+|.||++|||
T Consensus       321 gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~~~~~~~~riE~R~pda~aNP  400 (432)
T PLN03036        321 GGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDP  400 (432)
T ss_pred             chHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCCCCCCcccEEEEeCCCCCCCH
Confidence            57889999999966999999999999999999999999777799999999999999997653334689999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCcHHHHHHHhhhhccC
Q 014226          397 YVVTSLLAETTILWEPTLEAEALAAQKLALNV  428 (428)
Q Consensus       397 YLalAaiLaAGl~G~~~~~~~~~~~~~~~~~~  428 (428)
                      ||++|+|+.+.+...|+||||+||||||+|||
T Consensus       401 YLv~aai~~t~~~~~~~~~~~~~~~~~~~~~~  432 (432)
T PLN03036        401 YIVTSLLAETTILWEPTLEAEALAAQKLSLNV  432 (432)
T ss_pred             HHHHHHHHHHHhcCCcchhHHHHHhhhhccCC
Confidence            99999999999999999999999999999997

>PLN02284 glutamine synthetase Back     alignment and domain information
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00653 GlnA glutamine synthetase, type I Back     alignment and domain information
>PRK09469 glnA glutamine synthetase; Provisional Back     alignment and domain information
>TIGR03105 gln_synth_III glutamine synthetase, type III Back     alignment and domain information
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6 Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6 Back     alignment and domain information
>TIGR02050 gshA_cyan_rel uncharacterized enzyme Back     alignment and domain information
>PRK13517 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13515 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional Back     alignment and domain information
>PLN02611 glutamate--cysteine ligase Back     alignment and domain information
>PRK13518 carboxylate-amine ligase; Provisional Back     alignment and domain information
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type Back     alignment and domain information
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6 Back     alignment and domain information
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative Back     alignment and domain information
>COG2170 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03444 gshA_related glutamate--cysteine ligase family protein Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
2d3a_A356 Crystal Structure Of The Maize Glutamine Synthetase 1e-170
3fky_A370 Crystal Structure Of The Glutamine Synthetase Gln1d 1e-110
2uu7_A381 Crystal Structure Of Apo Glutamine Synthetase From 1e-109
2ojw_A384 Crystal Structure Of Human Glutamine Synthetase In 1e-108
2bvc_A486 Crystal Structure Of Mycobacterium Tuberculosis Glu 5e-06
1hto_A477 Crystallographic Structure Of A Relaxed Glutamine S 6e-06
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 275/353 (77%), Positives = 317/353 (89%), Gaps = 4/353 (1%)
Query: 64  LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQA 119
           L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++    PV  PS+LPKWNYDGSSTGQA
Sbjct: 4   LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQA 63
Query: 120 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 179
           PGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE 
Sbjct: 64  PGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEE 123
Query: 180 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 239
           PW+GIEQEYTLLQ++  WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYAG
Sbjct: 124 PWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAG 183
Query: 240 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 299
           INISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GDW
Sbjct: 184 INISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDW 243
Query: 300 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDS 359
           NGAG HTNYST+SMR+EGGYE IK AI  L LRHKEHI+AYGEGNERRLTG+HETA I++
Sbjct: 244 NGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINT 303
Query: 360 FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 412
           FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct: 304 FSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370 Back     alignment and structure
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381 Back     alignment and structure
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384 Back     alignment and structure
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine Synthetase In Complex With A Transition State Mimic Length = 486 Back     alignment and structure
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine Synthetase From Mycobacterium Tuberculosis Length = 477 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 0.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 0.0
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 0.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 2e-10
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 5e-09
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 3e-08
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 3e-07
2bvc_A486 Glutamine synthetase 1; ligase, transition state m 1e-06
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 1e-06
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356 Back     alignment and structure
 Score =  568 bits (1467), Expect = 0.0
 Identities = 275/354 (77%), Positives = 317/354 (89%), Gaps = 4/354 (1%)

Query: 63  RLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQ 118
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++    PV  PS+LPKWNYDGSSTGQ
Sbjct: 3   CLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQ 62

Query: 119 APGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAE 178
           APGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE
Sbjct: 63  APGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAE 122

Query: 179 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYA 238
            PW+GIEQEYTLLQ++  WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYA
Sbjct: 123 EPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYA 182

Query: 239 GINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGD 298
           GINISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GD
Sbjct: 183 GINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGD 242

Query: 299 WNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASID 358
           WNGAG HTNYST+SMR+EGGYE IK AI  L LRHKEHI+AYGEGNERRLTG+HETA I+
Sbjct: 243 WNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADIN 302

Query: 359 SFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 412
           +FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct: 303 TFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384 Back     alignment and structure
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370 Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421 Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729 Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Length = 473 Back     alignment and structure
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A* 1htq_A* Length = 486 Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 100.0
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 100.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 100.0
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 100.0
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 100.0
4hpp_A443 Probable glutamine synthetase; glutamine synthase 100.0
4acf_A486 Glutamine synthetase 1; ligase, nucleotide-binding 100.0
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 100.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 100.0
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 100.0
1r8g_A 372 Hypothetical protein YBDK; structural genomics, un 98.22
2gwd_A 449 Glutamate cysteine ligase; disulfide bridges, glut 97.97
3ln6_A 750 Glutathione biosynthesis bifunctional protein GSH; 95.29
3ln7_A 757 Glutathione biosynthesis bifunctional protein GSH; 82.24
1nxi_A132 Conserved hypothetical protein VC0424; structural 80.16
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.4e-92  Score=717.18  Aligned_cols=345  Identities=53%  Similarity=0.954  Sum_probs=287.6

Q ss_pred             HHHHHHHhcCCCCCCCEEEEEEEeecCCCCceeeccccCCCCC----CCCcccccCCCCCCCCCCCCceeeeeeeeeecC
Q 014226           62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPS----ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP  137 (428)
Q Consensus        62 ~~~~~~l~~~~~p~~~~v~~~~~d~~G~G~~lR~K~vp~~~~~----~l~~~~fdgs~~g~~~~~~~D~~l~PD~~~~~P  137 (428)
                      ..+++|++..- ..+++|++.|+|++|.   +|||.++++.+.    +++.|+||||++|+.+++++|++|+||+++++|
T Consensus        10 ~~~~~~~~l~~-~~i~~v~~~~~D~~G~---lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P   85 (370)
T 3fky_A           10 QILQKYLELDQ-RGRIIAEYVWIDGTGN---LRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP   85 (370)
T ss_dssp             ------------CCCEEEEEEEECSSSC---EEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred             HHHHHHhCccc-CCeEEEEEEEEcCCCC---eEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence            44566655531 1455666555555554   999999998774    345689999999999889999999999999999


Q ss_pred             CCCCCeEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCccccc
Q 014226          138 FRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGA  217 (428)
Q Consensus       138 w~~~~~a~Vlcd~~~~dG~P~~~~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (428)
                      |+++++++|+||++++||+|++.|||++|||++++++  |+++++|+|+|||||+.+. .+.+|+.++.|.++++||+..
T Consensus        86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~  162 (370)
T 3fky_A           86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV  162 (370)
T ss_dssp             TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence            9997799999999999999999999999999999877  9999999999999998763 355677667888999999887


Q ss_pred             CcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCC
Q 014226          218 GADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEG  297 (428)
Q Consensus       218 ~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~  297 (428)
                      +.+..+.++++++|+++|+++||+||++|||+|||||||++.|+++|++||++++||++||+||++||++|||||||+.+
T Consensus       163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g  242 (370)
T 3fky_A          163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG  242 (370)
T ss_dssp             STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence            76666679999999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             CCCCceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccCC
Q 014226          298 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRET  377 (428)
Q Consensus       298 ~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~  377 (428)
                      +++|||||+|+|||+.++++|.+.+++|++||+++|+++|+||+.||||||+|++|||++.+++||++||+++||||...
T Consensus       243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~  322 (370)
T 3fky_A          243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSV  322 (370)
T ss_dssp             SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHH
T ss_pred             CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCC
Confidence            36999999999999865567788899999999349999999999999999999999998556899999999999999764


Q ss_pred             CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCCC
Q 014226          378 EKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT  413 (428)
Q Consensus       378 ~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G~~~  413 (428)
                      ...+++|||+|+||++|||||++|+||+|||+|++.
T Consensus       323 ~~~~~~riE~R~pda~aNPYLa~Aailaagl~Gi~~  358 (370)
T 3fky_A          323 AKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDN  358 (370)
T ss_dssp             HHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBTT
T ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcCccc
Confidence            322246999999999999999999999999999964
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Back     alignment and structure
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Back     alignment and structure
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A* Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Back     alignment and structure
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Back     alignment and structure
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 428
d1f52a2368 d.128.1.1 (A:101-468) Glutamine synthetase, C-term 6e-05
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 52/259 (20%), Positives = 89/259 (34%), Gaps = 37/259 (14%)

Query: 177 AEVPWFGIEQEYTLLQQNV----------------------KWPLGWPVGAYPGPQGPYY 214
           A+   FG E E+ L                               G   G  PG +G Y+
Sbjct: 21  ADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80

Query: 215 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCS 273
                D    +DI           G+ +   + EV   GQ E     +      D I   
Sbjct: 81  PVPPVD--SAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIY 138

Query: 274 RYLLERITEQAGVVLSLDPKPIEGDWNGAG-CHTNYSTK-----SMREEGGYETIKKAIL 327
           +Y++  +  + G   +  PKP+ GD      CH + +       S  +  G        +
Sbjct: 139 KYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYI 198

Query: 328 NLSLRHKEHISAYG---EGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGY 384
              ++H + I+A       + +RL   +E   + ++S    NR  SIR+      + +  
Sbjct: 199 GGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSAR--NRSASIRIPVVASPKAR-R 255

Query: 385 LEDRRPASNMDPYVVTSLL 403
           +E R P    +PY+  + L
Sbjct: 256 IEVRFPDPAANPYLCFAAL 274

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
d1f52a2368 Glutamine synthetase, C-terminal domain {Salmonell 100.0
d2bvca2374 Glutamine synthetase, C-terminal domain {Mycobacte 100.0
d1f52a1100 Glutamine synthetase, N-terminal domain {Salmonell 99.7
d2bvca1100 Glutamine synthetase, N-terminal domain {Mycobacte 99.67
d1r8ga_ 368 Carboxylate-amine ligase YbdK {Escherichia coli [T 97.85
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=9.1e-68  Score=534.50  Aligned_cols=246  Identities=22%  Similarity=0.276  Sum_probs=209.9

Q ss_pred             CCCHHHHHHHHHHhhhcccccc--eEeeeeeEEEecCCC---------------CC-------CCCCCCCCCCCCCCCcc
Q 014226          159 PTNKRHRAAEIFSNSKVSAEVP--WFGIEQEYTLLQQNV---------------KW-------PLGWPVGAYPGPQGPYY  214 (428)
Q Consensus       159 ~~~PR~~Lkr~l~~l~~~G~~~--~~g~E~EF~L~~~~~---------------~~-------~~~~~~~~~~~~~~~~~  214 (428)
                      +.|||++|||+++++++.|+.+  .+|+|+|||||+...               .+       ..+...++.+...++||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            4699999999999999999965  569999999997421               00       00111122344566788


Q ss_pred             cccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCC-CCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 014226          215 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK  293 (428)
Q Consensus       215 ~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpK  293 (428)
                      +....+.  ..+++++|++.|+.+||+||++|+|+| ||||||++.|.++|+|||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            8887765  467788888889999999999999998 7999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeeeccccccccC-------CCch-HHHHHHHHHHHHhHHHHhhcccc---cccccCCCCCCCCCCCceee
Q 014226          294 PIEGDWNGAGCHTNYSTKSMRE-------EGGY-ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSW  362 (428)
Q Consensus       294 P~~~~~~GsG~H~H~SL~~~~~-------~~g~-~~~~~fiaGl~L~h~~al~a~~~---nSYkRl~p~~~ap~~~~~~W  362 (428)
                      |+.+ .+|||+|+|+|||+...       .+++ ...++||||| |+|+++++||++   ||||||+|++|||+  +++|
T Consensus       159 P~~~-~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGl-l~~~~~~~al~~PtvNSYkRl~~~~~aP~--~~~W  234 (368)
T d1f52a2         159 PMFG-DNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAPV--MLAY  234 (368)
T ss_dssp             SSTT-SCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCCC--EEEE
T ss_pred             cCCC-CCCcceeEEEEeccCCCcccccccccccCHHHHHHHHHH-HHhhHHHHHHHCCCchHHhhccCCCcCCc--eeee
Confidence            9999 49999999999997421       1234 3558999999 999999999985   99999999999999  9999


Q ss_pred             ccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014226          363 GVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE  411 (428)
Q Consensus       363 G~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G~  411 (428)
                      |.+||+++||||.... +.++|||+|++|++|||||++|++|+|||+||
T Consensus       235 g~~NR~a~iRi~~~~~-~~~~riE~R~~da~aNPYL~lAa~laagl~Gi  282 (368)
T d1f52a2         235 SARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDGI  282 (368)
T ss_dssp             ESSCTTEEEECCCCSC-GGGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccCccccceeecccCC-CccceEEecCCCccHHHHHHHHHHHHHhhhhh
Confidence            9999999999996532 24689999999999999999999999999993
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure