Citrus Sinensis ID: 014512

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---

MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAAA

cccccccHHHHHHHHHHHHHccccccccccccEEEccccHHHHHHHccccccccEEEccccccccccccccEEEcccHHHHHHHHHHHccccEEEEEcccEEcEEEEcccccccccEEEEEEEEccccEEEEEccccccccccccccEEEEccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEEccHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHcc

ccHHHHHHHHHHHHHHHHHHHHccccccccccEEcccHHHHHHHHHccccccccEEEEcEEEcccccccccEEEEccHHHHHHHHHHHHccEEEEcccccEEEEEEEEccccHHHEEEEEEEEEccccEEEEEccccEEEcccHHHHEEEEccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccEEEEEEEEEEcccccEccHHHHHHccccccccccccccHHHHccHHHHHHHHcccEEEEccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEcccccEHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHcc

MARKKIREYDSKRLLKEHFQRLsgrelpiksaqviestnfdelaqkepwltscklvvkpdmlfgkrgkSGLVALNLDLAQAATFVKECLgkememseckgpittfiiepfiphneEFYLNIVSErlgcsvsfsecggieieenwDKVKTIFvptgaclasetsaplvatlpLEIRGEIQEFIKSVFTLFQdldftflemnpftlvdrkpypldmrgelddTAAFKNfkkwgniefplpfgramsatESFIHdldektsaslkFTVLNPKGRIWTMVAGGGASVIYADtvgdlgyaselgnyaeysgapnegEVLQYARVVIDCatadpdgrKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYvrrggpnyqRGLAKMRALAEEIglpievygpeatmtGICKQAIECISAAA

markkireydskrllkehfqrlsgrelpikSAQVIESTnfdelaqkepwlTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLyvrrggpnyqrGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAAA

MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGpittfiiepfipHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQEFIKSVftlfqdldftflEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQalkekesklkaaRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAAA

********************************QVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI****

*ARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRAMSA***********TSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA**

*ARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAAA

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		423	2.2.26 [Sep-21-2011]
Q9SGY2		423	ATP-citrate synthase alph	yes	no	1.0	1.0	0.851	0.0
O22718		423	ATP-citrate synthase alph	yes	no	1.0	1.0	0.841	0.0
Q2QZ86		423	ATP-citrate synthase alph	yes	no	1.0	1.0	0.810	0.0
Q2QNG7		423	ATP-citrate synthase alph	no	no	1.0	1.0	0.796	0.0
O80526		424	ATP-citrate synthase alph	no	no	0.990	0.988	0.792	0.0
Q53JY8		407	ATP-citrate synthase subu	no	no	0.959	0.997	0.757	0.0
Q91V92		1091	ATP-citrate synthase OS=M	yes	no	0.983	0.381	0.434	2e-94
P16638		1100	ATP-citrate synthase OS=R	yes	no	0.976	0.375	0.440	2e-94
Q2TCH3		1101	ATP-citrate synthase OS=O	N/A	no	0.978	0.376	0.437	2e-93
Q32PF2		1091	ATP-citrate synthase OS=B	yes	no	0.978	0.379	0.434	2e-93

>sp\|Q9SGY2\|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1	Back alignment and function desciption

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/423 (85%), Positives = 395/423 (93%)

Query: 1   MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
           MARKKIREYDSKRL+KEHF+RLSG+ELPI+S Q+ E+T+ +EL +KEPWL+S KLVVKPD
Sbjct: 1   MARKKIREYDSKRLVKEHFKRLSGKELPIRSVQINETTDLNELVEKEPWLSSEKLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
           MLFGKRGKSGLVAL LD A  ATFVKE LGKE+EMS CKGPITTFI+EPF+PHNEE+YLN
Sbjct: 61  MLFGKRGKSGLVALKLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVPHNEEYYLN 120

Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
           +VS+RLGCS+SFSECGGIEIEENWDKVKTIF+PTGA L  E  APLVATLPLEI+ EI+E
Sbjct: 121 VVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTGASLTPEICAPLVATLPLEIKAEIEE 180

Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
           FIK +FTLFQDLDFTFLEMNPFTLVD  PYPLDMRGELDDTAAFKNFKKWG+IEFPLPFG
Sbjct: 181 FIKVIFTLFQDLDFTFLEMNPFTLVDGSPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFG 240

Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
           R MS TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
           YAEYSGAP E EVLQYARVVIDCATA+PDG+ RALVIGGGIANFTDVAATFNGII+ALKE
Sbjct: 301 YAEYSGAPKEDEVLQYARVVIDCATANPDGKSRALVIGGGIANFTDVAATFNGIIRALKE 360

Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
           KE+KLKAARMH++VRRGGPNYQ+GLAKMRAL ++IG+PIEVYGPEATMTGICK+AI+ I+
Sbjct: 361 KEAKLKAARMHIFVRRGGPNYQKGLAKMRALGDDIGVPIEVYGPEATMTGICKEAIQYIT 420

Query: 421 AAA 423
           AAA
Sbjct: 421 AAA 423

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8

>sp\|O22718\|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1	Back alignment and function description

>sp\|Q2QZ86\|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2	Back alignment and function description

>sp\|Q2QNG7\|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1	Back alignment and function description

>sp\|O80526\|ACLA3_ARATH ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1	Back alignment and function description

>sp\|Q53JY8\|ACLA1_ORYSJ ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLA-1 PE=3 SV=2	Back alignment and function description

>sp\|Q91V92\|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1	Back alignment and function description

>sp\|P16638\|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1	Back alignment and function description

>sp\|Q2TCH3\|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1	Back alignment and function description

>sp\|Q32PF2\|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		423
224102459		423	predicted protein [Populus trichocarpa]	1.0	1.0	0.888	0.0
449450446		423	PREDICTED: ATP-citrate synthase alpha ch	1.0	1.0	0.881	0.0
357485823		423	ATP-citrate synthase [Medicago truncatul	1.0	1.0	0.874	0.0
255568854		423	ATP-citrate synthase, putative [Ricinus	1.0	1.0	0.881	0.0
225425595		423	PREDICTED: ATP-citrate synthase alpha ch	1.0	1.0	0.879	0.0
297739077		465	unnamed protein product [Vitis vinifera]	1.0	0.909	0.879	0.0
388497858		423	unknown [Medicago truncatula]	1.0	1.0	0.872	0.0
147832628		423	hypothetical protein VITISV_017947 [Viti	1.0	1.0	0.879	0.0
15919089		423	ATP citrate lyase b-subunit [Lupinus alb	1.0	1.0	0.867	0.0
356501618		423	PREDICTED: ATP-citrate synthase alpha ch	1.0	1.0	0.874	0.0

>gi\|224102459\|ref\|XP_002312686.1\| predicted protein [Populus trichocarpa] gi\|222852506\|gb\|EEE90053.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/423 (88%), Positives = 402/423 (95%)

Query: 1   MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
           MARKKIREYDSKRLLKEHF+RLSGR+LPIKSAQV EST+F+ELA+KEPWL+S KLVVKPD
Sbjct: 1   MARKKIREYDSKRLLKEHFKRLSGRDLPIKSAQVTESTDFNELAEKEPWLSSAKLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
           MLFGKRGKSGLVALNLDL Q A FV++ LGKE+EM  CKGPITTFIIEPFIPH++EFYLN
Sbjct: 61  MLFGKRGKSGLVALNLDLDQVADFVQQRLGKEVEMGGCKGPITTFIIEPFIPHDQEFYLN 120

Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
           IVSERLGCS+SFSECGGIEIEENWDKVKTIFVPTGA   SE  APLVAT+PLEI+GEI+E
Sbjct: 121 IVSERLGCSISFSECGGIEIEENWDKVKTIFVPTGATFTSEVCAPLVATIPLEIKGEIEE 180

Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
           FI+S F LFQDLDFTFLEMNPFTLVD KPYPLDMRGELDDTAAFKNFKKWGNIEFP+PFG
Sbjct: 181 FIQSAFALFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPMPFG 240

Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
           R MS+TESF+H LDEKTSASLKFTVLNP+GRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSSTESFVHGLDEKTSASLKFTVLNPEGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
           YAEYSGAPNE EVLQYARVVIDCAT+DPDG KRALVIGGGIANFTDVAATFNGII+ALKE
Sbjct: 301 YAEYSGAPNEDEVLQYARVVIDCATSDPDGHKRALVIGGGIANFTDVAATFNGIIRALKE 360

Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
           KESKLKAARM++YVRRGGPNYQRGLAKMRAL EEIG+PIEVYGPEATMTGICKQAIECI+
Sbjct: 361 KESKLKAARMNIYVRRGGPNYQRGLAKMRALGEEIGIPIEVYGPEATMTGICKQAIECIT 420

Query: 421 AAA 423
           AAA
Sbjct: 421 AAA 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449450446\|ref\|XP_004142973.1\| PREDICTED: ATP-citrate synthase alpha chain protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357485823\|ref\|XP_003613199.1\| ATP-citrate synthase [Medicago truncatula] gi\|355514534\|gb\|AES96157.1\| ATP-citrate synthase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255568854\|ref\|XP_002525398.1\| ATP-citrate synthase, putative [Ricinus communis] gi\|223535361\|gb\|EEF37036.1\| ATP-citrate synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225425595\|ref\|XP_002262914.1\| PREDICTED: ATP-citrate synthase alpha chain protein 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297739077\|emb\|CBI28566.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|388497858\|gb\|AFK36995.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|147832628\|emb\|CAN70448.1\| hypothetical protein VITISV_017947 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15919089\|emb\|CAC86996.1\| ATP citrate lyase b-subunit [Lupinus albus]	Back alignment and taxonomy information

>gi\|356501618\|ref\|XP_003519621.1\| PREDICTED: ATP-citrate synthase alpha chain protein 1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		423
TAIR\|locus:2025865		423	ACLA-2 "ATP-citrate lyase A-2"	1.0	1.0	0.765	2.9e-174
TAIR\|locus:2012310		424	ACLA-3 "ATP-citrate lyase A-3"	0.990	0.988	0.730	9e-164
DICTYBASE\|DDB_G0278341		450	DDB_G0278341 "putative ATP cit	0.990	0.931	0.484	1.8e-101
UNIPROTKB\|F1P269		1094	ACLY "Uncharacterized protein"	0.983	0.380	0.399	7.4e-74
UNIPROTKB\|G3V9G4		1091	Acly "ATP citrate lyase, isofo	0.978	0.379	0.403	1.6e-73
UNIPROTKB\|F1NPU6		1100	ACLY "Uncharacterized protein"	0.983	0.378	0.393	1.7e-73
RGD\|2018		1100	Acly "ATP citrate lyase" [Ratt	0.976	0.375	0.404	1.7e-73
UNIPROTKB\|G3V888		1101	Acly "ATP citrate lyase, isofo	0.978	0.376	0.403	1.7e-73
UNIPROTKB\|F1LQS4		1100	Acly "ATP-citrate synthase" [R	0.976	0.375	0.404	2.9e-73
ZFIN\|ZDB-GENE-031113-1		1092	aclya "ATP citrate lyase a" [D	0.978	0.379	0.387	3.4e-73

TAIR\|locus:2025865 ACLA-2 "ATP-citrate lyase A-2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1693 (601.0 bits), Expect = 2.9e-174, P = 2.9e-174
 Identities = 324/423 (76%), Positives = 361/423 (85%)

Query:     1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
             MARKKIREYDSKRL+KEHF+RLSG+ELPI+S Q+ + T+ +EL ++EPWL+S KLVVKPD
Sbjct:     1 MARKKIREYDSKRLVKEHFKRLSGQELPIRSVQINQETDLNELVEREPWLSSEKLVVKPD 60

Query:    61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHNEEFYLN 120
             MLFGKRGKSGLVALNLD A  ATFVKE LGKE+EMS CKG            HNEEFYLN
Sbjct:    61 MLFGKRGKSGLVALNLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVPHNEEFYLN 120

Query:   121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
             IVS+RLGCS+SFSECGGI+IEENWDKVKTI +PTGA L  E  APLVATLPLEI+GE+++
Sbjct:   121 IVSDRLGCSISFSECGGIDIEENWDKVKTITIPTGASLTFEICAPLVATLPLEIKGELED 180

Query:   181 FIKSVXXXXXXXXXXXXEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
             FI+ +            EMNPFTLVD KPYPLDMRGELDDTAAFKNFKKWG+IEFP+PFG
Sbjct:   181 FIQVIFTLFEDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGDIEFPMPFG 240

Query:   241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
             R MS+TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct:   241 RVMSSTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query:   301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQXXXX 360
             YAEYSGAP E EVLQYARVVIDCATA+PDG+ RALVIGGGIANFTDVAATFNGII+    
Sbjct:   301 YAEYSGAPKEDEVLQYARVVIDCATANPDGKSRALVIGGGIANFTDVAATFNGIIRALKE 360

Query:   361 XXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
                     RMH++VRRGGPNYQ+GLAKMR+L +EIG+PIEVYGPEATMTGICK+AI+ I+
Sbjct:   361 KEAKLKAARMHIFVRRGGPNYQKGLAKMRSLGDEIGVPIEVYGPEATMTGICKEAIQYIT 420

Query:   421 AAA 423
             AAA
Sbjct:   421 AAA 423

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016874 "ligase activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=ISS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=RCA;TAS

GO:0009346 "citrate lyase complex" evidence=ISS

TAIR\|locus:2012310 ACLA-3 "ATP-citrate lyase A-3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0278341 DDB_G0278341 "putative ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P269 ACLY "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V9G4 Acly "ATP citrate lyase, isoform CRA_b" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NPU6 ACLY "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|2018 Acly "ATP citrate lyase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V888 Acly "ATP citrate lyase, isoform CRA_a" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LQS4 Acly "ATP-citrate synthase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-031113-1 aclya "ATP citrate lyase a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SGY2	ACLA1_ARATH	2, ., 3, ., 3, ., 8	0.8510	1.0	1.0	yes	no
Q2QZ86	ACLA2_ORYSJ	2, ., 3, ., 3, ., 8	0.8108	1.0	1.0	yes	no
O13907	ACL2_SCHPO	2, ., 3, ., 3, ., 8	0.3719	0.9739	0.8373	yes	no
Q53JY8	ACLA1_ORYSJ	2, ., 3, ., 3, ., 8	0.7570	0.9598	0.9975	no	no
O80526	ACLA3_ARATH	2, ., 3, ., 3, ., 8	0.7923	0.9905	0.9882	no	no
O22718	ACLA2_ARATH	2, ., 3, ., 3, ., 8	0.8416	1.0	1.0	yes	no
Q2QNG7	ACLA3_ORYSJ	2, ., 3, ., 3, ., 8	0.7966	1.0	1.0	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691
4th Layer	6.2.1.5	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_VIII0801	ATP citrate (pro-S)-lyase (EC-2.3.3.8) (424 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIX.2128.1	hypothetical protein (435 aa)	•	0.899
	gw1.XIV.3318.1	aconitate hydratase 1 (EC-4.2.1.3) (897 aa)	•	0.899
	gw1.97.147.1	dihydrolipoamide acetyltransferase (448 aa)	•	0.899
	gw1.8105.3.1	annotation not avaliable (106 aa)	•	0.899
	gw1.4745.2.1	annotation not avaliable (67 aa)	•	0.899
	grail3.0001073802	SubName- Full=Putative uncharacterized protein; (354 aa)	•	0.899
	fgenesh4_pm.C_LG_I001100	malate dehydrogenase (EC-1.1.1.37) (356 aa)	•	0.899
	fgenesh4_pg.C_scaffold_155000049	malate dehydrogenase (EC-1.1.1.37) (412 aa)	•	0.899
	fgenesh4_pg.C_LG_III000191	SubName- Full=Putative uncharacterized protein; (512 aa)	•	0.899
	eugene3.01810009	aconitate hydratase 1 (EC-4.2.1.3) (899 aa)	•	0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		423
PLN02235		423	PLN02235, PLN02235, ATP citrate (pro-S)-lyase	0.0
COG0045		387	COG0045, SucC, Succinyl-CoA synthetase, beta subun	3e-46
TIGR01016		386	TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be	2e-21
PRK00696		388	PRK00696, sucC, succinyl-CoA synthetase subunit be	7e-11
pfam08442		202	pfam08442, ATP-grasp_2, ATP-grasp domain	4e-10
PRK14046		392	PRK14046, PRK14046, malate--CoA ligase subunit bet	4e-09
PLN00124		422	PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi	9e-04

>gnl\|CDD\|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase	Back alignment and domain information

 Score =  885 bits (2288), Expect = 0.0
 Identities = 369/423 (87%), Positives = 400/423 (94%)

Query: 1   MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
           MARKKIREYDSKRLLKEH +RL+G +LPI+SAQV EST+F+ELA KEPWL+S KLVVKPD
Sbjct: 1   MARKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
           MLFGKRGKSGLVALNLDLAQ ATFVKE LGKE+EM  CKGPITTFI+EPF+PH++EFYL+
Sbjct: 61  MLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLS 120

Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
           IVS+RLGCS+SFSECGGIEIEENWDKVKTIF+PT A L SE  APL+ATLPLEIRG+I+E
Sbjct: 121 IVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPLTSEICAPLIATLPLEIRGKIEE 180

Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
           FIK VF +FQDLDFTFLEMNPFTLVD +PYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG
Sbjct: 181 FIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240

Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
           R MS TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
           YAEYSGAPNE EVLQYARVVIDCATA+PDGRKRAL+IGGGIANFTDVAATFNGII+AL+E
Sbjct: 301 YAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALRE 360

Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
           KESKLKAARMH++VRRGGPNYQ+GLAKMRAL EEIG+PIEVYGPEATMTGICKQAI+ I+
Sbjct: 361 KESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDYIT 420

Query: 421 AAA 423
           AAA
Sbjct: 421 AAA 423

Length = 423

>gnl\|CDD\|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit	Back alignment and domain information

>gnl\|CDD\|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional	Back alignment and domain information

>gnl\|CDD\|219843 pfam08442, ATP-grasp_2, ATP-grasp domain	Back alignment and domain information

>gnl\|CDD\|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional	Back alignment and domain information

>gnl\|CDD\|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		423
PLN02235		423	ATP citrate (pro-S)-lyase	100.0
COG0045		387	SucC Succinyl-CoA synthetase, beta subunit [Energy	100.0
PLN00124		422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	100.0
PRK14046		392	malate--CoA ligase subunit beta; Provisional	100.0
TIGR01016		386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	100.0
KOG1447		412	consensus GTP-specific succinyl-CoA synthetase, be	100.0
PRK00696		388	sucC succinyl-CoA synthetase subunit beta; Provisi	100.0
KOG2799		434	consensus Succinyl-CoA synthetase, beta subunit [E	100.0
PF08442		202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	100.0
PF13549		222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	100.0
KOG1254		600	consensus ATP-citrate lyase [Energy production and	99.95
PF00549		153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	99.74
COG1042		598	Acyl-CoA synthetase (NDP forming) [Energy producti	99.66
TIGR02717		447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	99.59
COG1042		598	Acyl-CoA synthetase (NDP forming) [Energy producti	99.19
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071		194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	98.92
COG0151		428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	98.68
TIGR00514		449	accC acetyl-CoA carboxylase, biotin carboxylase su	98.6
PRK01372		304	ddl D-alanine--D-alanine ligase; Reviewed	98.53
TIGR01161		352	purK phosphoribosylaminoimidazole carboxylase, Pur	98.5
PF02786		211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	98.5
PLN02257		434	phosphoribosylamine--glycine ligase	98.48
PRK09288		395	purT phosphoribosylglycinamide formyltransferase 2	98.47
TIGR01142		380	purT phosphoribosylglycinamide formyltransferase 2	98.47
PRK13789		426	phosphoribosylamine--glycine ligase; Provisional	98.46
PRK07178		472	pyruvate carboxylase subunit A; Validated	98.45
PRK08462		445	biotin carboxylase; Validated	98.44
PRK00885		420	phosphoribosylamine--glycine ligase; Provisional	98.43
PRK08654		499	pyruvate carboxylase subunit A; Validated	98.42
PRK13790		379	phosphoribosylamine--glycine ligase; Provisional	98.42
PRK06019		372	phosphoribosylaminoimidazole carboxylase ATPase su	98.41
PRK08591		451	acetyl-CoA carboxylase biotin carboxylase subunit;	98.41
PRK05586		447	biotin carboxylase; Validated	98.39
TIGR00877		423	purD phosphoribosylamine--glycine ligase. This enz	98.39
PRK12833		467	acetyl-CoA carboxylase biotin carboxylase subunit;	98.39
PLN02948		577	phosphoribosylaminoimidazole carboxylase	98.38
PRK06524		493	biotin carboxylase-like protein; Validated	98.35
TIGR02712		1201	urea_carbox urea carboxylase. Members of this fami	98.34
PRK14569		296	D-alanyl-alanine synthetase A; Provisional	98.34
PRK06111		450	acetyl-CoA carboxylase biotin carboxylase subunit;	98.26
PRK12815		1068	carB carbamoyl phosphate synthase large subunit; R	98.26
PF02222		172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	98.25
PRK08463		478	acetyl-CoA carboxylase subunit A; Validated	98.23
PF13535		184	ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A	98.2
PLN02735		1102	carbamoyl-phosphate synthase	98.16
TIGR01235		1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.14
TIGR01369		1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	98.14
COG0439		449	AccC Biotin carboxylase [Lipid metabolism]	98.13
TIGR01369		1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	98.12
PRK12999		1146	pyruvate carboxylase; Reviewed	98.11
PRK14573		809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	98.1
PLN02735		1102	carbamoyl-phosphate synthase	98.1
PRK05294		1066	carB carbamoyl phosphate synthase large subunit; R	98.05
TIGR01205		315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	98.05
PRK14571		299	D-alanyl-alanine synthetase A; Provisional	97.97
KOG0237		788	consensus Glycinamide ribonucleotide synthetase (G	97.97
PRK14016		727	cyanophycin synthetase; Provisional	97.95
TIGR02068		864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	97.94
PRK13278		358	purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D	97.92
PRK12815		1068	carB carbamoyl phosphate synthase large subunit; R	97.91
PF07478		203	Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In	97.9
PRK07206		416	hypothetical protein; Provisional	97.86
PRK06395		435	phosphoribosylamine--glycine ligase; Provisional	97.84
COG0458		400	CarB Carbamoylphosphate synthase large subunit (sp	97.82
PRK01966		333	ddl D-alanyl-alanine synthetase A; Reviewed	97.82
TIGR01435		737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	97.81
PRK12767		326	carbamoyl phosphate synthase-like protein; Provisi	97.8
PRK02186		887	argininosuccinate lyase; Provisional	97.8
PRK14568		343	vanB D-alanine--D-lactate ligase; Provisional	97.8
PRK10446		300	ribosomal protein S6 modification protein; Provisi	97.77
PRK05784		486	phosphoribosylamine--glycine ligase; Provisional	97.77
PRK14572		347	D-alanyl-alanine synthetase A; Provisional	97.76
PRK05294		1066	carB carbamoyl phosphate synthase large subunit; R	97.71
PRK02471		752	bifunctional glutamate--cysteine ligase/glutathion	97.69
PRK14570		364	D-alanyl-alanine synthetase A; Provisional	97.62
COG0026		375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.61
TIGR02144		280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	97.57
PF08443		190	RimK: RimK-like ATP-grasp domain; InterPro: IPR013	97.53
TIGR00768		277	rimK_fam alpha-L-glutamate ligases, RimK family. T	97.45
COG0027		394	PurT Formate-dependent phosphoribosylglycinamide f	97.44
TIGR03103		547	trio_acet_GNAT GNAT-family acetyltransferase TIGR0	97.28
PLN02522		608	ATP citrate (pro-S)-lyase	97.25
PRK06849		389	hypothetical protein; Provisional	97.14
PRK13277		366	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo	97.1
COG0189		318	RimK Glutathione synthase/Ribosomal protein S6 mod	97.05
PTZ00187		317	succinyl-CoA synthetase alpha subunit; Provisional	96.95
PF13607		138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	96.94
COG0074		293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	96.88
PRK06091		555	membrane protein FdrA; Validated	96.86
COG4770		645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	96.72
TIGR02717		447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.39
KOG0238		670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	96.23
PLN00125		300	Succinyl-CoA ligase [GDP-forming] subunit alpha	96.22
TIGR01019		286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	95.95
PF02655		161	ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806	95.9
COG1038		1149	PycA Pyruvate carboxylase [Energy production and c	95.77
PRK05678		291	succinyl-CoA synthetase subunit alpha; Validated	95.49
COG1181		317	DdlA D-alanine-D-alanine ligase and related ATP-gr	95.31
PLN02941		328	inositol-tetrakisphosphate 1-kinase	95.07
PF15632		329	ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa	94.89
KOG0369		1176	consensus Pyruvate carboxylase [Energy production	94.8
COG1759		361	5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu	93.87
TIGR00640		132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	93.03
COG3919		415	Predicted ATP-grasp enzyme [General function predi	92.06
PRK02261		137	methylaspartate mutase subunit S; Provisional	91.32
PRK12458		338	glutathione synthetase; Provisional	90.35
cd02071		122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	86.28
COG0616		317	SppA Periplasmic serine proteases (ClpP class) [Po	85.91
TIGR02291		317	rimK_rel_E_lig alpha-L-glutamate ligase-related pr	85.53
cd00578		452	L-fuc_L-ara-isomerases L-fucose isomerase (FucIase	84.97
PRK06091		555	membrane protein FdrA; Validated	84.07
PRK10949		618	protease 4; Provisional	83.53
cd07014		177	S49_SppA Signal peptide peptidase A. Signal peptid	82.99
KOG1255		329	consensus Succinyl-CoA synthetase, alpha subunit [	82.5
cd02072		128	Glm_B12_BD B12 binding domain of glutamate mutase	82.5
PF02601		319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	82.31
TIGR01501		134	MthylAspMutase methylaspartate mutase, S subunit.	80.93
TIGR01380		312	glut_syn glutathione synthetase, prokaryotic. This	80.56

>PLN02235 ATP citrate (pro-S)-lyase	Back alignment and domain information

Probab=100.00  E-value=5.5e-104  Score=797.29  Aligned_cols=418  Identities=84%  Similarity=1.313  Sum_probs=389.0

Q ss_pred             CCCCCCCHHHHHHHHHHchhCCCCCccCCCceEEe-cCCCHHHHHHhhcc---cCCCcEEEeeccccCcccccCeeEEeC
Q 014512            1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVI-ESTNFDELAQKEPW---LTSCKLVVKPDMLFGKRGKSGLVALNL   76 (423)
Q Consensus         1 ~~~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~-~~~~~~ea~~~a~~---lg~~pvVvKaqv~~g~Rgk~GgV~l~~   76 (423)
                      ||+++|||||||+||++||+|.+|||||  .+.++ ++  ++|+.+++++   |++.++|||||+++|||||+|||+++.
T Consensus         1 ~~~~~l~EyqaK~ll~~~~~~~~gipvP--~~~v~~~~--~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~   76 (423)
T PLN02235          1 MARKKIREYDSKRLLKEHLKRLAGIDLP--IRSAQVTE--STDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNL   76 (423)
T ss_pred             CCcccccHHHHHHHHHHhhcccCCCCCC--CCeeccCC--HHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeC
Confidence            9999999999999999999999999999  66776 55  5788777655   886567999999999999999999999


Q ss_pred             CHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeeecCCCcccccccceeEEEecCCcc
Q 014512           77 DLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGA  156 (423)
Q Consensus        77 s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s~~GGv~iE~~~d~~~~lpi~~~~  156 (423)
                      |++|+++++++|+|+++.++|+.+++++||||+++++.+|+|+|++.||..+.+++|.+||||||+.|+++++++|||..
T Consensus        77 s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~  156 (423)
T PLN02235         77 DLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEA  156 (423)
T ss_pred             CHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCC
Confidence            99999999999999998776777799999999999999999999999999878999999999999999999999999999


Q ss_pred             CCCHhhHHHHHhcCChhhHHHHHHHHHHHHHHhhccCccEeeeeceeecCCceEEEeeeeeeccchhcccccccccccCC
Q 014512          157 CLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFP  236 (423)
Q Consensus       157 ~l~~~~a~~l~~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~g~~~alDaki~idd~A~~r~~~~~~~~~~~  236 (423)
                      +++++++++++.+++....+++.+++.+||++|.++|++++|||||++.||+++|+|+|+.+||||.|||++.|..++||
T Consensus       157 gl~~~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~  236 (423)
T PLN02235        157 PLTSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFP  236 (423)
T ss_pred             CCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhccc
Confidence            99999999999999888889999999999999999999999999999988899999999999999999999889999999


Q ss_pred             CCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHH
Q 014512          237 LPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQY  316 (423)
Q Consensus       237 ~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a  316 (423)
                      .+|+|+.+|+|.++.++|+...++++|++|+|+||||||+||||++|+|||++..+|.+|+||||+|+||+|+.++++++
T Consensus       237 ~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a  316 (423)
T PLN02235        237 LPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY  316 (423)
T ss_pred             ccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHH
Confidence            99999999999988888877777766666999999999999999999999999997544999999999999999999999


Q ss_pred             HHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcC
Q 014512          317 ARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIG  396 (423)
Q Consensus       317 ~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~G  396 (423)
                      ++++|+++++||+++++||||||||+|||+||+||+||++|++++..++++.++|||||++|||+++|+++|+++++++|
T Consensus       317 ~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~g  396 (423)
T PLN02235        317 ARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIG  396 (423)
T ss_pred             HHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcC
Confidence            99999888889999999999999999999999999999999999864444567999999999999999999999999999


Q ss_pred             CceeecCCCCCHHHHHHHHHHHHHhc
Q 014512          397 LPIEVYGPEATMTGICKQAIECISAA  422 (423)
Q Consensus       397 ip~~~~g~~~t~~~av~~~v~~~~~~  422 (423)
                      +|+++|++++||++||+++|+..-++
T Consensus       397 l~i~~~~~~~~m~~a~~~av~~~~~~  422 (423)
T PLN02235        397 VPIEVYGPEATMTGICKQAIDYITAA  422 (423)
T ss_pred             CcEEEeCCCCCHHHHHHHHHhhhccC
Confidence            99999999999999999999855444

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]	Back alignment and domain information

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional	Back alignment and domain information

>PRK14046 malate--CoA ligase subunit beta; Provisional	Back alignment and domain information

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit	Back alignment and domain information

>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]	Back alignment and domain information

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional	Back alignment and domain information

>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]	Back alignment and domain information

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []	Back alignment and domain information

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A	Back alignment and domain information

>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]	Back alignment and domain information

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6	Back alignment and domain information

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	Back alignment and domain information

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain	Back alignment and domain information

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	Back alignment and domain information

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6	Back alignment and domain information

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit	Back alignment and domain information

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed	Back alignment and domain information

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein	Back alignment and domain information

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)	Back alignment and domain information

>PLN02257 phosphoribosylamine--glycine ligase	Back alignment and domain information

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated	Back alignment and domain information

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2	Back alignment and domain information

>PRK13789 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PRK07178 pyruvate carboxylase subunit A; Validated	Back alignment and domain information

>PRK08462 biotin carboxylase; Validated	Back alignment and domain information

>PRK00885 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PRK08654 pyruvate carboxylase subunit A; Validated	Back alignment and domain information

>PRK13790 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	Back alignment and domain information

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated	Back alignment and domain information

>PRK05586 biotin carboxylase; Validated	Back alignment and domain information

>TIGR00877 purD phosphoribosylamine--glycine ligase	Back alignment and domain information

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional	Back alignment and domain information

>PLN02948 phosphoribosylaminoimidazole carboxylase	Back alignment and domain information

>PRK06524 biotin carboxylase-like protein; Validated	Back alignment and domain information

>TIGR02712 urea_carbox urea carboxylase	Back alignment and domain information

>PRK14569 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated	Back alignment and domain information

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Back alignment and domain information

>PRK08463 acetyl-CoA carboxylase subunit A; Validated	Back alignment and domain information

>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A	Back alignment and domain information

>PLN02735 carbamoyl-phosphate synthase	Back alignment and domain information

>TIGR01235 pyruv_carbox pyruvate carboxylase	Back alignment and domain information

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit	Back alignment and domain information

>COG0439 AccC Biotin carboxylase [Lipid metabolism]	Back alignment and domain information

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit	Back alignment and domain information

>PRK12999 pyruvate carboxylase; Reviewed	Back alignment and domain information

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional	Back alignment and domain information

>PLN02735 carbamoyl-phosphate synthase	Back alignment and domain information

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase	Back alignment and domain information

>PRK14571 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK14016 cyanophycin synthetase; Provisional	Back alignment and domain information

>TIGR02068 cya_phycin_syn cyanophycin synthetase	Back alignment and domain information

>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional	Back alignment and domain information

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6	Back alignment and domain information

>PRK07206 hypothetical protein; Provisional	Back alignment and domain information

>PRK06395 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]	Back alignment and domain information

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed	Back alignment and domain information

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type	Back alignment and domain information

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional	Back alignment and domain information

>PRK02186 argininosuccinate lyase; Provisional	Back alignment and domain information

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional	Back alignment and domain information

>PRK10446 ribosomal protein S6 modification protein; Provisional	Back alignment and domain information

>PRK05784 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PRK14572 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional	Back alignment and domain information

>PRK14570 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX	Back alignment and domain information

>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []	Back alignment and domain information

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family	Back alignment and domain information

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103	Back alignment and domain information

>PLN02522 ATP citrate (pro-S)-lyase	Back alignment and domain information

>PRK06849 hypothetical protein; Provisional	Back alignment and domain information

>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional	Back alignment and domain information

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional	Back alignment and domain information

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A	Back alignment and domain information

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]	Back alignment and domain information

>PRK06091 membrane protein FdrA; Validated	Back alignment and domain information

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	Back alignment and domain information

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain	Back alignment and domain information

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]	Back alignment and domain information

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha	Back alignment and domain information

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit	Back alignment and domain information

>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []	Back alignment and domain information

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated	Back alignment and domain information

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN02941 inositol-tetrakisphosphate 1-kinase	Back alignment and domain information

>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon	Back alignment and domain information

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain	Back alignment and domain information

>COG3919 Predicted ATP-grasp enzyme [General function prediction only]	Back alignment and domain information

>PRK02261 methylaspartate mutase subunit S; Provisional	Back alignment and domain information

>PRK12458 glutathione synthetase; Provisional	Back alignment and domain information

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain	Back alignment and domain information

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein	Back alignment and domain information

>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins	Back alignment and domain information

>PRK06091 membrane protein FdrA; Validated	Back alignment and domain information

>PRK10949 protease 4; Provisional	Back alignment and domain information

>cd07014 S49_SppA Signal peptide peptidase A	Back alignment and domain information

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]	Back alignment and domain information

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)	Back alignment and domain information

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3	Back alignment and domain information

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit	Back alignment and domain information

>TIGR01380 glut_syn glutathione synthetase, prokaryotic	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		423
3pff_A		829	Truncated Human Atp-Citrate Lyase With Adp And Tart		1e-78
3mwe_A		425	Truncated Human Atp-Citrate Lyase With Tartrate Bou		1e-78
3mwd_A		425	Truncated Human Atp-Citrate Lyase With Citrate Boun		1e-75

>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829

Back alignment and structure

Iteration: 1

Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 169/421 (40%), Positives = 231/421 (54%), Gaps = 7/421 (1%) Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60 M+ K I E K LL + S + K A+V T++ L Q PWL S LVVKPD Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60 Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHN--EEFY 118 L +RGK GLV +NL L +++K LG+E + + G H+ EEFY Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120 Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGE 177 + I + R G V F GG+++ + K + + V L E L+ P + + Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180 Query: 178 IQEFIKSVXXXXXXXXXXXXEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237 + FI + E+NP + Y LD+ ++D TA + KWG+IEFP Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240 Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297 PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300 Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGII 355 L NY EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI+ Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358 Query: 356 QXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415 + + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418 Query: 416 I 416 + Sbjct: 419 L 419

PyMOL of 3pff

>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 425

Back alignment and structure

>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 425

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		423
3pff_A		829	ATP-citrate synthase; phosphohistidine, organic ac	0.0
3mwd_A		425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	1e-172
3ufx_B		397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	5e-13
2nu8_B		388	SCS-beta, succinyl-COA synthetase beta chain; citr	6e-13
2fp4_B		395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829	Back alignment and structure

 Score =  603 bits (1556), Expect = 0.0
 Identities = 181/426 (42%), Positives = 252/426 (59%), Gaps = 3/426 (0%)

Query: 1   MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
           M+ K I E   K LL +     S  +   K A+V   T++  L Q  PWL S  LVVKPD
Sbjct: 1   MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPH--NEEFY 118
            L  +RGK GLV +NL L    +++K  LG+E  + +  G +  F+IEPF+PH   EEFY
Sbjct: 61  QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120

Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASET-SAPLVATLPLEIRGE 177
           + I + R G  V F   GG+++ +   K + + V     L  E     L+   P + +  
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180

Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
           +  FI  +F  ++DL FT+LE+NP  +     Y LD+  ++D TA +    KWG+IEFP 
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240

Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
           PFGR     E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300

Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQA 357
           L NY EYSGAP+E +   YA+ ++   T +     + L+IGG IANFT+VAATF GI++A
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360

Query: 358 LKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417
           +++ +  LK   + ++VRRGGPNYQ GL  M  + +  G+PI V+G E  MT I   A+ 
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420

Query: 418 CISAAA 423
                 
Sbjct: 421 HRPIPN 426

PyMOL of 3pff

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425	Back alignment and structure

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397	Back alignment and structure

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388	Back alignment and structure

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		423
3mwd_A		425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	100.0
3pff_A		829	ATP-citrate synthase; phosphohistidine, organic ac	100.0
2fp4_B		395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	100.0
2nu8_B		388	SCS-beta, succinyl-COA synthetase beta chain; citr	100.0
3ufx_B		397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	100.0
1wr2_A		238	Hypothetical protein PH1789; structural genomics,	100.0
2csu_A		457	457AA long hypothetical protein; structural genomi	99.85
3dmy_A		480	Protein FDRA; predicted actyl-COA synthetase, nysg	99.26
1vkz_A		412	Phosphoribosylamine--glycine ligase; TM1250, struc	98.8
4eg0_A		317	D-alanine--D-alanine ligase; structural genomics,	98.78
2cqy_A		108	Propionyl-COA carboxylase alpha chain, mitochondri	98.77
3ouz_A		446	Biotin carboxylase; structural genomics, center fo	98.75
3e5n_A		386	D-alanine-D-alanine ligase A; bacterial blight; 2.	98.74
3aw8_A		369	PURK, phosphoribosylaminoimidazole carboxylase, AT	98.67
4e4t_A		419	Phosphoribosylaminoimidazole carboxylase, ATPase;	98.67
3glk_A		540	Acetyl-COA carboxylase 2; ATP binding, alternative	98.65
3jrx_A		587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	98.64
3i12_A		364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	98.64
1kjq_A		391	GART 2, phosphoribosylglycinamide formyltransferas	98.63
3mjf_A		431	Phosphoribosylamine--glycine ligase; structural ge	98.63
3lp8_A		442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	98.61
1a9x_A		1073	Carbamoyl phosphate synthetase (large chain); amid	98.61
2w70_A		449	Biotin carboxylase; ligase, ATP-binding, fatty aci	98.59
1w96_A		554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	98.59
3k5i_A		403	Phosphoribosyl-aminoimidazole carboxylase; purine	98.57
3q2o_A		389	Phosphoribosylaminoimidazole carboxylase, ATPase;	98.56
1ehi_A		377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	98.55
2dwc_A		433	PH0318, 433AA long hypothetical phosphoribosylglyc	98.53
4dim_A		403	Phosphoribosylglycinamide synthetase; structural g	98.52
3tqt_A		372	D-alanine--D-alanine ligase; cell envelope; 1.88A	98.48
3r5x_A		307	D-alanine--D-alanine ligase; alpha-beta structure,	98.47
1a9x_A		1073	Carbamoyl phosphate synthetase (large chain); amid	98.46
3n6r_A		681	Propionyl-COA carboxylase, alpha subunit; protein	98.45
2z04_A		365	Phosphoribosylaminoimidazole carboxylase ATPase su	98.42
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	98.42
3u9t_A		675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.4
1ulz_A		451	Pyruvate carboxylase N-terminal domain; biotin car	98.39
3eth_A		355	Phosphoribosylaminoimidazole carboxylase ATPase su	98.39
3se7_A		346	VANA; alpha-beta structure, D-alanine-D-lactate li	98.37
2vpq_A		451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	98.36
2xcl_A		422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	98.34
3orq_A		377	N5-carboxyaminoimidazole ribonucleotide synthetas;	98.33
2yrx_A		451	Phosphoribosylglycinamide synthetase; glycinamide	98.32
2dzd_A		461	Pyruvate carboxylase; biotin carboxylase, ligase;	98.32
2ip4_A		417	PURD, phosphoribosylamine--glycine ligase; GAR syn	98.32
3va7_A		1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.3
2yw2_A		424	Phosphoribosylamine--glycine ligase; glycinamide r	98.3
2qf7_A		1165	Pyruvate carboxylase protein; multi-domain, multi-	98.3
3hbl_A		1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.25
2qk4_A		452	Trifunctional purine biosynthetic protein adenosi;	98.25
3vmm_A		474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	98.22
4fu0_A		357	D-alanine--D-alanine ligase 7; vancomycin resistan	98.19
3vot_A		425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	98.17
3k3p_A		383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	98.12
2i87_A		364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	98.03
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	98.01
1iow_A		306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	97.95
3lwb_A		373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	97.92
3ax6_A		380	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.91
1e4e_A		343	Vancomycin/teicoplanin A-type resistance protein;	97.91
2pn1_A		331	Carbamoylphosphate synthase large subunit; ZP_0053	97.9
2fb9_A		322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	97.81
1uc8_A		280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	97.8
2pvp_A		367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	97.77
2r7k_A		361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	97.5
3mwd_B		334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	97.15
2r85_A		334	PURP protein PF1517; ATP-grAsp superfamily, unknow	97.07
3dmy_A		480	Protein FDRA; predicted actyl-COA synthetase, nysg	96.84
2fp4_A		305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.75
1oi7_A		288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.73
2yv2_A		297	Succinyl-COA synthetase alpha chain; COA-binding d	96.61
1z2n_X		324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	96.6
2yv1_A		294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.29
2nu8_A		288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.15
2pbz_A		320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	95.98
4ffl_A		363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.96
1i7n_A		309	Synapsin II; synapse, phosphorylation, neuropeptid	95.82
3pff_A		829	ATP-citrate synthase; phosphohistidine, organic ac	95.49
2p0a_A		344	Synapsin-3, synapsin III; neurotransmitter release	95.2
2csu_A		457	457AA long hypothetical protein; structural genomi	94.85
1pk8_A		422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	94.72
1gsa_A		316	Glutathione synthetase; ligase; HET: ADP GSH; 2.00	94.34
2q7d_A		346	Inositol-tetrakisphosphate 1-kinase; inositol kina	94.33
3df7_A		305	Putative ATP-grAsp superfamily protein; putative p	92.2
2yxb_A		161	Coenzyme B12-dependent mutase; alpha/beta, structu	85.99

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*	Back alignment and structure

Probab=100.00  E-value=9.1e-98  Score=763.18  Aligned_cols=413  Identities=43%  Similarity=0.742  Sum_probs=370.0

Q ss_pred             CCCCCCCHHHHHHHHHHchhCCCCCccCCCceEEec-CCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHH
Q 014512            1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIE-STNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLA   79 (423)
Q Consensus         1 ~~~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~-~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e   79 (423)
                      ||++.++|||+|+||++|+.|++.. +...++.+++ .++++||.++++|||++|||||+|+++|||||+|||+++.|++
T Consensus         1 m~~k~i~Ey~~K~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~e   79 (425)
T 3mwd_A            1 MSAKAISEQTGKELLYKFICTTSAI-QNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD   79 (425)
T ss_dssp             -CEEEECHHHHHHHHHHHCCCSSCB-CSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred             CCchhHhHHHHHHHHHHhccccCCc-cCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHH
Confidence            8999999999999999995555321 2222344444 3468999999999987899999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchhccCCcceeEEEEEeecCC--CceEEEEEEEeCCCCeeeeecCCCcccccccceeEEEecCCccC
Q 014512           80 QAATFVKECLGKEMEMSECKGPITTFIIEPFIPH--NEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGAC  157 (423)
Q Consensus        80 ea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~--~~E~ylgi~~D~~~p~il~s~~GGv~iE~~~d~~~~lpi~~~~~  157 (423)
                      |+++++++|+++.+.++.+.+.+++|+||+|+++  ++|+|+|+++||.+|+|+||++|||+||+++|++.++|+++..+
T Consensus        80 ev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~  159 (425)
T 3mwd_A           80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK  159 (425)
T ss_dssp             HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCC
T ss_pred             HHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCccc
Confidence            9999999999988754345567899999999986  49999999999999999999999999999999887778888778


Q ss_pred             CCHhhH-HHHHhcCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhcccccccccccC
Q 014512          158 LASETS-APLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWGNIEF  235 (423)
Q Consensus       158 l~~~~a-~~l~~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~~~~~  235 (423)
                      +....+ ++++.++++.++++++++|.+||++|.++|++++|||||++ .+| ++|+|||+++||||.|||++.|..+++
T Consensus       160 l~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~lDDnA~fR~~~~~~~~~~  238 (425)
T 3mwd_A          160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEF  238 (425)
T ss_dssp             CCHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEEGGGHHHHHHHHCSCCC
T ss_pred             cCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceeecccchhhhChhhhhhhhc
Confidence            888777 67888888899999999999999999999999999999999 555 999999999999999999988998888


Q ss_pred             CCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCC--CCCceeeccCCCCHHHH
Q 014512          236 PLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEGEV  313 (423)
Q Consensus       236 ~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg--~paN~lD~gG~a~~~~~  313 (423)
                      +.+|.++.+|+|.++.++|++++++++||||+|+||||||+||||++|+|||+|..+  ||  +||||+|+||+|+.+++
T Consensus       239 ~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v  316 (425)
T 3mwd_A          239 PPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQT  316 (425)
T ss_dssp             CCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHH
T ss_pred             cccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHH
Confidence            888999999999888777777788899999999999999999999999999999995  78  79999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhh
Q 014512          314 LQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAE  393 (423)
Q Consensus       314 ~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~  393 (423)
                      +++++.+++++++||+++++||||||||++|++||+||+||++|+++....+...++|||||++|||+++|+++|++.++
T Consensus       317 ~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~  396 (425)
T 3mwd_A          317 YDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGK  396 (425)
T ss_dssp             HHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCc
Confidence            99988888888889999999999999999999999999999999999743222257999999999999999999999888


Q ss_pred             hcCCceeecCCCCCHHHHHHHHHH
Q 014512          394 EIGLPIEVYGPEATMTGICKQAIE  417 (423)
Q Consensus       394 ~~Gip~~~~g~~~t~~~av~~~v~  417 (423)
                      +.|+|+|+||++++|++.|.+|++
T Consensus       397 ~lgip~~~~gpe~~~~~i~~~a~~  420 (425)
T 3mwd_A          397 TTGIPIHVFGTETHMTAIVGMALG  420 (425)
T ss_dssp             HHTCCEEEECTTSCTTHHHHHHTT
T ss_pred             ccCCceEEeCccchHHHHHHHHhc
Confidence            889999999999999999999874

PyMOL of 3mwd

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}	Back alignment and structure

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*	Back alignment and structure

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*	Back alignment and structure

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}	Back alignment and structure

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}	Back alignment and structure

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1	Back alignment and structure

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}	Back alignment and structure

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2	Back alignment and structure

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A	Back alignment and structure

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*	Back alignment and structure

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*	Back alignment and structure

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}	Back alignment and structure

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A	Back alignment and structure

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A	Back alignment and structure

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*	Back alignment and structure

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*	Back alignment and structure

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*	Back alignment and structure

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A	Back alignment and structure

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}	Back alignment and structure

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*	Back alignment and structure

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...	Back alignment and structure

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A	Back alignment and structure

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*	Back alignment and structure

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*	Back alignment and structure

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1	Back alignment and structure

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*	Back alignment and structure

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}	Back alignment and structure

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}	Back alignment and structure

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*	Back alignment and structure

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*	Back alignment and structure

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2	Back alignment and structure

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*	Back alignment and structure

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}	Back alignment and structure

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}	Back alignment and structure

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*	Back alignment and structure

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A	Back alignment and structure

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A	Back alignment and structure

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}	Back alignment and structure

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}	Back alignment and structure

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}	Back alignment and structure

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A	Back alignment and structure

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*	Back alignment and structure

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*	Back alignment and structure

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}	Back alignment and structure

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}	Back alignment and structure

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}	Back alignment and structure

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}	Back alignment and structure

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}	Back alignment and structure

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*	Back alignment and structure

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}	Back alignment and structure

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}	Back alignment and structure

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*	Back alignment and structure

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}	Back alignment and structure

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*	Back alignment and structure

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*	Back alignment and structure

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}	Back alignment and structure

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*	Back alignment and structure

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*	Back alignment and structure

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*	Back alignment and structure

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}	Back alignment and structure

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*	Back alignment and structure

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1	Back alignment and structure

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}	Back alignment and structure

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*	Back alignment and structure

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}	Back alignment and structure

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*	Back alignment and structure

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9	Back alignment and structure

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*	Back alignment and structure

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*	Back alignment and structure

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}	Back alignment and structure

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}	Back alignment and structure

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1	Back alignment and structure

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*	Back alignment and structure

>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A	Back alignment and structure

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X	Back alignment and structure

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}	Back alignment and structure

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		423
d2nu7b2		238	d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-	6e-14
d2nu7b1		150	c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta	8e-13
d1eucb2		246	d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-	9e-13
d1eucb1		148	c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta	1e-07

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.8 bits (167), Expect = 6e-14
 Identities = 41/233 (17%), Positives = 76/233 (32%), Gaps = 21/233 (9%)

Query: 5   KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
            + EY +K+L   +        LP         T   E  +    + +   VVK  +  G
Sbjct: 2   NLHEYQAKQLFARY-------GLPAPVGYAC--TTPREAEEAASKIGAGPWVVKCQVHAG 52

Query: 65  KRGKSGLVALNLDLAQAATFVKECLGKEM----EMSECKGPITTFIIEP-FIPHNEEFYL 119
            RGK+G V +         F +  LGK +      +  +      +     I        
Sbjct: 53  GRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112

Query: 120 NIVSERLGCSVSFSECGGIEIEENWDKVKTIFV-----PTGACLASETSAPLVA-TLPLE 173
            +           S  GG+EIE+  ++   +       P    +  +         L  +
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172

Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFK 225
           +  +  +    + T+F + D   +E+NP  +        LD +   D  A F+
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225

PyMOL of d2nu7b2

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150	Back information, alignment and structure

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246	Back information, alignment and structure

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		423
d2nu7b2		238	Succinyl-CoA synthetase, beta-chain, N-terminal do	100.0
d1eucb1		148	Succinyl-CoA synthetase, beta-chain, C-terminal do	100.0
d2nu7b1		150	Succinyl-CoA synthetase, beta-chain, C-terminal do	100.0
d1eucb2		246	Succinyl-CoA synthetase, beta-chain, N-terminal do	100.0
d2csua3		163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	99.71
d1vkza3		220	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.07
d1ulza3		214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	98.99
d2j9ga3		216	Biotin carboxylase (BC), domain 2 {Escherichia col	98.98
d1gsoa3		224	Glycinamide ribonucleotide synthetase (GAR-syn), d	98.91
d1a9xa5		275	Carbamoyl phosphate synthetase (CPS), large subuni	98.77
d1iowa2		210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	98.63
d1a9xa6		259	Carbamoyl phosphate synthetase (CPS), large subuni	98.62
d1w96a3		267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	98.61
d1ehia2		228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	98.58
d2r7ka2		238	5-formaminoimidazole-4-carboxamide ribonucleotide	98.48
d2r85a2		235	5-formaminoimidazole-4-carboxamide ribonucleotide	98.44
d1kjqa3		206	Glycinamide ribonucleotide transformylase PurT, do	98.14
d1e4ea2		211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	98.09
d3etja3		198	N5-carboxyaminoimidazole ribonucleotide synthetase	97.84
d1uc8a2		192	Lysine biosynthesis enzyme LysX ATP-binding domain	97.76
d2csua2		161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	97.45
d1oi7a2		167	Succinyl-CoA synthetase, alpha-chain, C-terminal d	96.93
d1i7na2		206	Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116	95.75
d2nu7a2		166	Succinyl-CoA synthetase, alpha-chain, C-terminal d	94.71
d1euca2		176	Succinyl-CoA synthetase, alpha-chain, C-terminal d	94.58
d7reqa2		168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.04
d1ccwa_		137	Glutamate mutase, small subunit {Clostridium cochl	86.08
d1xrsb1		160	D-lysine 5,6-aminomutase beta subunit KamE, C-term	84.45

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.6e-48  Score=365.98  Aligned_cols=220  Identities=21%  Similarity=0.294  Sum_probs=195.0

Q ss_pred             CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512            4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT   83 (423)
Q Consensus         4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~   83 (423)
                      |+|+|||||+||++|     |||||  ++.++++  ++||.+++++||++|||+|+|+.++||||+|||+++.+++|+.+
T Consensus         1 m~L~E~eaK~lL~~y-----GIpvp--~~~~a~s--~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~   71 (238)
T d2nu7b2           1 MNLHEYQAKQLFARY-----GLPAP--VGYACTT--PREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRA   71 (238)
T ss_dssp             CBCCHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHH
T ss_pred             CchhHHHHHHHHHHc-----CCCCC--CceEECC--HHHHHHHHHHhCCCcEEEEEeecccccccceEEEeccccHHHHH
Confidence            899999999999999     99999  8899988  69999999999855999999999999999999999999999999


Q ss_pred             HHHHHhcccchh--ccCC-cceeEEEEEeecCCCceEEEEEEEeCC-CCe-eeeecCCCccccccc----ceeEEEecCC
Q 014512           84 FVKECLGKEMEM--SECK-GPITTFIIEPFIPHNEEFYLNIVSERL-GCS-VSFSECGGIEIEENW----DKVKTIFVPT  154 (423)
Q Consensus        84 ~a~~~l~~~~~~--~g~~-~~v~~vlVe~~~~~~~E~ylgi~~D~~-~p~-il~s~~GGv~iE~~~----d~~~~lpi~~  154 (423)
                      ++.+++++.+.+  +.+. ..+++++||+|+++++|+|+|++.||. +|+ +++|+.||++||++.    ..+...++++
T Consensus        72 ~a~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~~  151 (238)
T d2nu7b2          72 FAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDP  151 (238)
T ss_dssp             HHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECCT
T ss_pred             HHHHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccCCceEEEEecccceeeEeeeccccccccccccCc
Confidence            999999987654  2222 368999999999999999999999998 565 455678999999864    3455668899


Q ss_pred             ccCCCHhhHHHHHhc--CChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhcccccccc
Q 014512          155 GACLASETSAPLVAT--LPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWG  231 (423)
Q Consensus       155 ~~~l~~~~a~~l~~g--~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~  231 (423)
                      ..++....+.+++.+  .+..+..++.+++.++|++|.+.+++++|||||++ .+|+++|+|||+++||||.|||++ |.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~lEINPLiv~~~G~vvAlDAki~lDdnA~fr~~~-~~  230 (238)
T d2nu7b2         152 LTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-LR  230 (238)
T ss_dssp             TTCCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-HH
T ss_pred             ccccchhhHHHHHHhcCCcchhhHHHHHHHHHhhHhhhcCCceEEeecceEECCCCCEEEEEeEEeecCcchhcChh-HH
Confidence            899999999888874  45578899999999999999999999999999999 888899999999999999999998 54


Q ss_pred             cc
Q 014512          232 NI  233 (423)
Q Consensus       232 ~~  233 (423)
                      .+
T Consensus       231 ~~  232 (238)
T d2nu7b2         231 EM  232 (238)
T ss_dssp             HT
T ss_pred             hh
Confidence            55

PyMOL of d2nu7b2

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}	Back information, alignment and structure

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}	Back information, alignment and structure

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}	Back information, alignment and structure

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}	Back information, alignment and structure

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}	Back information, alignment and structure

>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}	Back information, alignment and structure