Citrus Sinensis ID: 014577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLTGWLKDH
cHHHHHHHHcccEEEEEcccEEEccHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHcccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHccccccccccccccccccccccccccccHHcccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccc
cHHHHHHHHcccEEEEEcccccccHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccHcccccHHHHHHHHHHHHccccEEEccccccccHHHHcccccccccccHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccHHHHHHHHccccHHHHHHcHHHcccccHHHHcHHHccHHHHHHccccEcccEccccccHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccccccccccccccccccccccccccccc
mkvkdyastagievfspvshtlfnpadiiqknggkppltYQSFLKLagqplwassplpvslsslppvgdvgyfeisevptveelgykgygqeelspfrggeSEALKKLRESISDKEWvanfekpkgdpsaylkpattvlspylkfgclssryFYQCLTDVYQnvkkhtsppvslvgqllwRDFFYTvafgtpnfdrmkgnrickqipwsndDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFltrgdmfvhwekgrDVFDRLLidsdwainngnwLWLSCSSFfyqynriyspvsfgkkydpngnyirhflpvlkdmpkeyiyepwtapltiqtrakciigrdypapvvshdsasKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFegeenqesgrrQKQKTLTGWLKDH
MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKewvanfekpkgdpsaylKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAyalnqklngqvsedgLKNLRRKfegeenqesgrrqkqktltgwlkdh
MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAssplpvslsslppvGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLTGWLKDH
*********AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYG***************************************AYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV***************************************************************
MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL**LP******YFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT**************SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGE************************************************
********TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP***********KRKLGEAYALNQKLNGQVSEDGLKNLRRKF************************
MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLP******YFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG**************************************
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MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLTGWLKDH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
O48652556 (6-4)DNA photolyase OS=Ar yes no 0.983 0.746 0.768 0.0
Q0E2Y1551 (6-4)DNA photolyase OS=Or yes no 0.973 0.745 0.717 0.0
Q6ZZY0620 Cryptochrome-1 OS=Sylvia N/A no 0.876 0.596 0.518 1e-113
Q8QG61621 Cryptochrome-1 OS=Gallus yes no 0.876 0.595 0.513 1e-112
Q16526586 Cryptochrome-1 OS=Homo sa yes no 0.869 0.626 0.511 1e-112
P97784606 Cryptochrome-1 OS=Mus mus yes no 0.879 0.612 0.517 1e-111
Q5IZC5620 Cryptochrome-1 OS=Erithac N/A no 0.876 0.596 0.515 1e-111
Q32Q86588 Cryptochrome-1 OS=Rattus yes no 0.879 0.630 0.517 1e-111
Q8WP19586 Cryptochrome-1 OS=Macaca N/A no 0.869 0.626 0.509 1e-111
Q70AD6587 Cryptochrome-1 OS=Spalax N/A no 0.869 0.625 0.503 1e-110
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2 Back     alignment and function desciption
 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/415 (76%), Positives = 377/415 (90%)

Query: 1   MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
           +KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P  A S L +S
Sbjct: 141 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 200

Query: 61  LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
            SSLPP+GD+G   ISEVP++EELGYK   Q + +PFRGGESEALK+L +SISDK WVAN
Sbjct: 201 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 260

Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
           FEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLW
Sbjct: 261 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLW 320

Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
           R+FFYT AFGTPNFD+MKGNRICKQIPW+ D  +LAAWR+ +TGYPWIDAIMVQL KWGW
Sbjct: 321 REFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGW 380

Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
           MHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ+NRI
Sbjct: 381 MHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRI 440

Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
           YSP+SFGKKYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G+DYP P+V 
Sbjct: 441 YSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVL 500

Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
           HDSASKECKRK+GEAYALN+K++G+V E+ L++LRRK + +E++ES  R ++  L
Sbjct: 501 HDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKL 555
Involved in repair of UV radiation-induced DNA damage. Catalyzes the photoreactivation of pyrimidine [6-4] pyrimidone photoproduct (6-4 products). Binds specifically to DNA containing 6-4 products and repairs these lesions in a visible light-dependent manner. Not required for repair of cyclobutane pyrimidine dimer (CPD).
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 3
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3 SV=1 Back     alignment and function description
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1 Back     alignment and function description
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1 Back     alignment and function description
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2 Back     alignment and function description
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
255553063 537 DNA photolyase, putative [Ricinus commun 0.976 0.767 0.847 0.0
359483005 564 PREDICTED: (6-4)DNA photolyase [Vitis vi 0.988 0.739 0.839 0.0
297743390 538 unnamed protein product [Vitis vinifera] 0.988 0.775 0.839 0.0
224073768 540 predicted protein [Populus trichocarpa] 0.978 0.764 0.845 0.0
317106754 536 JHL25H03.11 [Jatropha curcas] 0.978 0.770 0.859 0.0
228312124 537 Chain A, (6-4) Photolyase Crystal Struct 0.983 0.772 0.768 0.0
449491122 544 PREDICTED: (6-4)DNA photolyase-like [Cuc 0.995 0.772 0.752 0.0
18400841 556 (6-4)DNA photolyase [Arabidopsis thalian 0.983 0.746 0.768 0.0
356526185 535 PREDICTED: (6-4)DNA photolyase-like [Gly 0.981 0.773 0.776 0.0
449436599 549 PREDICTED: (6-4)DNA photolyase-like [Cuc 0.995 0.765 0.741 0.0
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis] gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/413 (84%), Positives = 389/413 (94%), Gaps = 1/413 (0%)

Query: 2   KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
           KVK+YAS+A IEVFSPVSHTLFNPADIIQKNGGKPPL+YQSFLK+AGQP WASSPLP ++
Sbjct: 124 KVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSPLPTTI 183

Query: 62  SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
           SSLPPVGDVG  EISEVPT+EELGY    Q+E +PFRGGESEALK+LRE I++KEWVANF
Sbjct: 184 SSLPPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREKITNKEWVANF 243

Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
           EKPKGDPSA++KPATTVLSPYLKFGCLSSRYFYQCL DVY+NV KHTSPPVSL+GQLLWR
Sbjct: 244 EKPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVGKHTSPPVSLLGQLLWR 303

Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
           DFFYTVAFGTPNFD+MK NRICKQIPW+ DDELL+AWREARTGYPWIDAIMVQLRKWGWM
Sbjct: 304 DFFYTVAFGTPNFDQMKENRICKQIPWNEDDELLSAWREARTGYPWIDAIMVQLRKWGWM 363

Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
           HHLARHCVACFLTRGD+FVHWEKGR+VF+RLLIDSDWAINNGNWLWLSCSSFFYQYNRIY
Sbjct: 364 HHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 423

Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
           SP+SFGKKYDPNGNYI+HFLPVLKDMPKEYIYEPWTAPL++QT+AKCIIGRDYP PVV+H
Sbjct: 424 SPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEPWTAPLSVQTKAKCIIGRDYPKPVVAH 483

Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQE-SGRRQKQK 413
           DSASKECK+KL E+YALNQKLNG++ E+ L+NLRRK E +++QE  G+RQ+ K
Sbjct: 484 DSASKECKKKLAESYALNQKLNGKLGEEDLRNLRRKLEQDQDQEHKGKRQRLK 536

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa] gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas] Back     alignment and taxonomy information
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana] gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana] gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana] gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair defective 3 gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max] Back     alignment and taxonomy information
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
TAIR|locus:2093217556 UVR3 "UV REPAIR DEFECTIVE 3" [ 0.978 0.742 0.753 8.5e-184
ZFIN|ZDB-GENE-010426-8545 cry5 "cryptochrome 5" [Danio r 0.874 0.677 0.523 1.9e-106
UNIPROTKB|E1C2Z9624 CRY1 "Cryptochrome-1" [Gallus 0.900 0.608 0.505 2.8e-105
UNIPROTKB|F1NYE9621 CRY1 "Cryptochrome-1" [Gallus 0.900 0.611 0.505 2.8e-105
UNIPROTKB|Q8QG61621 CRY1 "Cryptochrome-1" [Gallus 0.900 0.611 0.505 2.8e-105
RGD|735083588 Cry1 "cryptochrome 1 (photolya 0.900 0.646 0.505 9.5e-105
UNIPROTKB|Q32Q86588 Cry1 "Cryptochrome-1" [Rattus 0.900 0.646 0.505 9.5e-105
MGI|MGI:1270841606 Cry1 "cryptochrome 1 (photolya 0.900 0.627 0.505 1.2e-104
UNIPROTKB|Q16526586 CRY1 "Cryptochrome-1" [Homo sa 0.900 0.648 0.505 1.6e-104
UNIPROTKB|E2RMX4587 CRY1 "Uncharacterized protein" 0.900 0.647 0.505 2e-104
TAIR|locus:2093217 UVR3 "UV REPAIR DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1783 (632.7 bits), Expect = 8.5e-184, P = 8.5e-184
 Identities = 312/414 (75%), Positives = 367/414 (88%)

Query:     1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAXXXXXXX 60
             +KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P  A       
Sbjct:   141 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 200

Query:    61 XXXXXXXGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
                    GD+G   ISEVP++EELGYK   Q + +PFRGGESEALK+L +SISDK WVAN
Sbjct:   201 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 260

Query:   121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
             FEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLW
Sbjct:   261 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLW 320

Query:   181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
             R+FFYT AFGTPNFD+MKGNRICKQIPW+ D  +LAAWR+ +TGYPWIDAIMVQL KWGW
Sbjct:   321 REFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGW 380

Query:   241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
             MHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ+NRI
Sbjct:   381 MHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRI 440

Query:   301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
             YSP+SFGKKYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G+DYP P+V 
Sbjct:   441 YSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVL 500

Query:   361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESG-RRQKQK 413
             HDSASKECKRK+GEAYALN+K++G+V E+ L++LRRK + +E++ES  R Q+ K
Sbjct:   501 HDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPK 554
GO:0003913 "DNA photolyase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0003914 "DNA (6-4) photolyase activity" evidence=ISS;IDA
GO:0009411 "response to UV" evidence=IMP
ZFIN|ZDB-GENE-010426-8 cry5 "cryptochrome 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Z9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYE9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8QG61 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|735083 Cry1 "cryptochrome 1 (photolyase-like)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q32Q86 Cry1 "Cryptochrome-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1270841 Cry1 "cryptochrome 1 (photolyase-like)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q16526 CRY1 "Cryptochrome-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMX4 CRY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48652UVR3_ARATH4, ., 1, ., 9, 9, ., 1, 30.76860.98340.7464yesno
Q0E2Y1UVR3_ORYSJ4, ., 1, ., 9, 9, ., 1, 30.71730.97390.7459yesno
Q16526CRY1_HUMANNo assigned EC number0.51170.86960.6262yesno
P97784CRY1_MOUSENo assigned EC number0.51710.87910.6122yesno
Q32Q86CRY1_RATNo assigned EC number0.51710.87910.6309yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.990.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 1e-102
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 3e-67
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 1e-48
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 5e-47
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 1e-43
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 2e-31
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 8e-05
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information 
 Score =  304 bits (780), Expect = e-102
 Identities = 111/284 (39%), Positives = 158/284 (55%), Gaps = 14/284 (4%)

Query: 99  GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
           GGE  ALK+L   +  KE +A++ K + DP+A     T+ LSPYL FG +S R  YQ + 
Sbjct: 1   GGEKAALKRLESFL--KERLADYAKDRDDPAA---DGTSRLSPYLHFGEISPRQVYQAVR 55

Query: 159 DVYQNVK--KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD---E 213
               +           + + +L+WR+F+  + +  P+ +R   N     +PW+ D     
Sbjct: 56  KAQGDSPEGGAKQGAEAFLSELIWREFYIQLLYHNPDLERENLNDAYDGLPWAKDRPDEY 115

Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
           LL AW E RTGYP +DA M QLR+ GWMH+  R  VA FLT+  + + W +G + F   L
Sbjct: 116 LLEAWEEGRTGYPLVDAAMRQLRQTGWMHNRLRMIVASFLTK-KLLIDWREGEEYFAETL 174

Query: 274 IDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
           ID+D A NNG W W + + +    Y RI++PV    K+DPNG YIR ++P L  +P  YI
Sbjct: 175 IDADPASNNGGWQWQAGTGTDAAPYFRIFNPVKQSDKFDPNGEYIRRWVPELAGLPDRYI 234

Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
           +EPW AP  +Q  A C++G+DYP P+V H  A K        A 
Sbjct: 235 HEPWKAPRPVQ--AGCVLGKDYPKPIVDHKEARKRALDAYKAAR 276

Length = 276
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
KOG0133531 consensus Deoxyribodipyrimidine photolyase/cryptoc 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
COG3046505 Uncharacterized protein related to deoxyribodipyri 99.9
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 98.31
>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information 
Probab=100.00  E-value=4e-99  Score=791.10  Aligned_cols=357  Identities=27%  Similarity=0.483  Sum_probs=298.4

Q ss_pred             CHHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCC-CCCCCCCCCCCCCCCCCCccCCCCC
Q 014577            1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAS-SPLPVSLSSLPPVGDVGYFEISEVP   79 (422)
Q Consensus         1 ~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~-~p~p~~~~~~~~~~~~~~~~~~~~p   79 (422)
                      ++|+++|.+.||+++.|++++|++|++|.++.+ ++|+|||+|++++.+....+ ++.+.+. .++ .+.      ...+
T Consensus       106 ~~v~~~l~~~gi~~~~~~~~~l~~p~~i~~~~~-~~~~~ft~f~~~~~~~~~~~~~~~~~p~-~~~-~~~------~~~~  176 (475)
T TIGR02766       106 HRAKEVLTAQGISVQSFNADLLYEPWEVYDELG-RPFTMFAAFWERCLSMPYDPESPLLPPK-KII-SGD------VSKC  176 (475)
T ss_pred             HHHHHHHHHcCCEEEEecCCEEEChhhhcccCC-CCCCeecHHHHHHHhccCCCCCCCCCcc-ccC-CCc------cccC
Confidence            368899999999999999999999999999766 99999999999975532111 1121111 010 000      0011


Q ss_pred             ChhhcCCCCCC---CCC--CCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHH
Q 014577           80 TVEELGYKGYG---QEE--LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY  154 (422)
Q Consensus        80 ~l~~lg~~~~~---~~~--~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~  154 (422)
                      +++.+++....   ...  ...|+|||++|+++|+.|++++  +.+|+.+||.|+   ..+||+|||||+|||||||+|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~--~~~Y~~~Rd~p~---~~~tS~LSPyL~~G~ISpR~v~  251 (475)
T TIGR02766       177 SADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGP--LLEYSKNRKKAD---SATTSLLSPYLHFGEVSVRKVF  251 (475)
T ss_pred             ChhhcCCCCcccccccccccccCCCccHHHHHHHHHHHHHH--HHHHhhcCCCCC---CCCCCCCCcccccCcccHHHHH
Confidence            12233331100   001  1248999999999999999865  899999999987   4799999999999999999999


Q ss_pred             HHHHHHH-----HhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHH
Q 014577          155 QCLTDVY-----QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID  229 (422)
Q Consensus       155 ~~~~~~~-----~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VD  229 (422)
                      +++....     ........+.++|++||+|||||+++++++|.+......+.++.++|+++++.|++|++|+|||||||
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~s~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~f~aW~~G~TG~P~VD  331 (475)
T TIGR02766       252 HLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVD  331 (475)
T ss_pred             HHHHhhhhhhhhcccCCCcccHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhcCCCCCCHHHHHHHHcCCCCCcchh
Confidence            9985311     11111234668899999999999999999997765555555678999999999999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccc
Q 014577          230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGK  308 (422)
Q Consensus       230 AaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~  308 (422)
                      ||||||++|||||||+|||||||||| +|+||||.|++||+++|||||+|+|+|||||+| +|+|+.||||||||++|++
T Consensus       332 A~MRqL~~TGwmhnR~Rm~vAsfl~k-~L~idWr~G~~~F~~~LiD~D~a~N~g~Wqw~Ag~g~d~~~~~RifnP~~q~~  410 (475)
T TIGR02766       332 AGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY  410 (475)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHc-ccCCChHHHHHHHHHHccccchhcccccccccccCCCCCCcccccCCHHHHHh
Confidence            99999999999999999999999999 999999999999999999999999999999999 6778899999999999999


Q ss_pred             cCCCCcchhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHH
Q 014577          309 KYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL  372 (422)
Q Consensus       309 k~Dp~G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~  372 (422)
                      +|||+|+|||||||||+++|+++||+||+++..+|+++||.||.+||.|||||+++|++|++++
T Consensus       411 ~~Dp~g~yir~wvPeL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~~~~~~  474 (475)
T TIGR02766       411 KFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEAL  474 (475)
T ss_pred             hcCCCcccHHHhChhhccCCHHHhcCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999764

At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 0.0
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 1e-109
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 1e-108
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 1e-108
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 5e-65
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 4e-38
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 6e-38
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 4e-35
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 2e-31
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 9e-29
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 1e-28
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 1e-27
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 3e-27
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 2e-24
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 2e-20
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure 
Iteration: 1

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/415 (74%), Positives = 367/415 (88%)
Query: 1   MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAXXXXXXX 60
           +KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P  A       
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 181
Query: 61  XXXXXXXGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
                  GD+G   ISEVP++EELGYK   Q + +PFRGGESEALK+L +SISDK WVAN
Sbjct: 182 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 241
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
           FEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLW
Sbjct: 242 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
           R+FFYT AFGTPNFD+MKGNRICKQIPW+ D  +LAAWR+ +TGYPWIDAIMVQL KWGW
Sbjct: 302 REFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
           MHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ+NRI
Sbjct: 362 MHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRI 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
           YSP+SFGKKYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G+DYP P+V 
Sbjct: 422 YSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVL 481
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
           HDSASKECKRK+GEAYALN+K++G+V E+ L++LRRK + +E++ES  R ++  L
Sbjct: 482 HDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKL 536
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 0.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-174
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 1e-162
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 1e-139
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 1e-130
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 7e-69
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 2e-68
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 5e-64
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 3e-62
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 4e-54
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 4e-42
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 1e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
 Score =  550 bits (1420), Expect = 0.0
 Identities = 319/414 (77%), Positives = 376/414 (90%)

Query: 2   KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
           KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P  A S L +S 
Sbjct: 123 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSY 182

Query: 62  SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
           SSLPP+GD+G   ISEVP++EELGYK   Q + +PFRGGESEALK+L +SISDK WVANF
Sbjct: 183 SSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANF 242

Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
           EKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLWR
Sbjct: 243 EKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWR 302

Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
           +FFYT AFGTPNFD+MKGNRICKQIPW+ D  +LAAWR+ +TGYPWIDAIMVQL KWGWM
Sbjct: 303 EFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWM 362

Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
           HHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ+NRIY
Sbjct: 363 HHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIY 422

Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
           SP+SFGKKYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G+DYP P+V H
Sbjct: 423 SPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLH 482

Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
           DSASKECKRK+GEAYALN+K++G+V E+ L++LRRK + +E++ES  R ++  L
Sbjct: 483 DSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKL 536
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.4e-106  Score=854.36  Aligned_cols=412  Identities=78%  Similarity=1.416  Sum_probs=347.3

Q ss_pred             HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCh
Q 014577            2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTV   81 (422)
Q Consensus         2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p~l   81 (422)
                      +|+++|++.||++++|+|++|++|++|.++++|++|+|||||+++|.+...+..|.......+++.+.........+|++
T Consensus       123 ~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l  202 (537)
T 3fy4_A          123 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSL  202 (537)
T ss_dssp             HHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCT
T ss_pred             HHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCCccCHHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcH
Confidence            68899999999999999999999999998777789999999999998764211121111011222111111123457888


Q ss_pred             hhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHH
Q 014577           82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY  161 (422)
Q Consensus        82 ~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~  161 (422)
                      +++|+..........|+|||++|+++|+.|+.++.++.+|+.+||.|+.+..++||+|||||+|||||||+|++++.+..
T Consensus       203 ~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~  282 (537)
T 3fy4_A          203 EELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIY  282 (537)
T ss_dssp             TTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HhcCCCcccccccCCCCccHHHHHHHHHHHHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHH
Confidence            88877422111234699999999999999998644699999999998743357999999999999999999999998765


Q ss_pred             HhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhccc
Q 014577          162 QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM  241 (422)
Q Consensus       162 ~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwm  241 (422)
                      ........+.++|++||+|||||+++++++|++...++++.+..++|++|++.|++|++|+|||||||||||||++||||
T Consensus       283 ~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~m  362 (537)
T 3fy4_A          283 KDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWM  362 (537)
T ss_dssp             HTTSCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCC
T ss_pred             hhcccccccHHHHHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcc
Confidence            43322345678899999999999999999999988888888899999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhhhc
Q 014577          242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFL  321 (422)
Q Consensus       242 Hnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wv  321 (422)
                      |||+|||||||||||+|+||||.|++||+++|||||+|+|+|||||+||++++.+|||||||++|++||||+|+|||+||
T Consensus       363 Hnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~D~a~n~g~Wqw~ag~g~d~~~fRifNP~~Q~~kfDp~G~yIr~wv  442 (537)
T 3fy4_A          363 HHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFL  442 (537)
T ss_dssp             CHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTTGGGTCTTCHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHccccccccChHhhhhhcccCCCcccccccCHHHHHHHhCCCchHHHHhC
Confidence            99999999999995599999999999999999999999999999999965555559999999999999999999999999


Q ss_pred             ccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCcchhhhhhhhhhhccc
Q 014577          322 PVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGE  401 (422)
Q Consensus       322 PEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (422)
                      |||++||+++||+||+++..+|+++||.+|.|||.|||||+++|++|+++|+++|+.++..++++.+.+.+.+++++.+.
T Consensus       443 PEL~~lp~~~Ih~Pw~~~~~~~~~~g~~~g~~YP~PIVdh~~ar~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (537)
T 3fy4_A          443 PVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKD  522 (537)
T ss_dssp             GGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             HhhcCCCHHhhCCcccCCHHHHHhcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999776


Q ss_pred             cccchh-hhhhhh
Q 014577          402 ENQESG-RRQKQK  413 (422)
Q Consensus       402 ~~~~~~-~~~~~~  413 (422)
                      ...++. .++++|
T Consensus       523 ~~~~~~~~~~~~~  535 (537)
T 3fy4_A          523 EHEESKIRNQRPK  535 (537)
T ss_dssp             TTC----------
T ss_pred             CCccccccccccc
Confidence            666655 555554
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 5e-56
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 2e-52
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 9e-49
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 3e-44
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 5e-33
d1jr7a_311 b.82.2.3 (A:) Gab protein (hypothetical protein Yg 3e-04
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

 Score =  184 bits (467), Expect = 5e-56
 Identities = 89/277 (32%), Positives = 142/277 (51%), Gaps = 5/277 (1%)

Query: 96  PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQ 155
            F+GGE+  L +L++     + + ++++ +          ++  SP+L  GCLS R+ YQ
Sbjct: 7   AFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVG--ADYSSKFSPWLALGCLSPRFIYQ 64

Query: 156 CLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELL 215
            +   Y+  +        L+ +LLWRDFF  VA    N    +G  + K  PW  D    
Sbjct: 65  EVKR-YEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRF 123

Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
             WR  +TGYP +DA M +L   G+M +  R  VA FL + ++ + W  G + F+  LID
Sbjct: 124 ELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCK-NLGIDWRWGAEWFESCLID 182

Query: 276 SDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
            D   N GNW + +      +  R ++     ++YDP G Y+RH+LP LK++P + I++P
Sbjct: 183 YDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQP 242

Query: 336 WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
           W    T Q +    +G DYP P V+    S E +RK+
Sbjct: 243 WLLSATEQKQWGVQLGVDYPRPCVNF-HQSVEARRKI 278
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 98.84
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 98.69
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 98.48
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 98.27
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 97.47
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.8e-88  Score=662.88  Aligned_cols=277  Identities=28%  Similarity=0.510  Sum_probs=252.2

Q ss_pred             CCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhcc-----CCCCC
Q 014577           96 PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-----KHTSP  170 (422)
Q Consensus        96 ~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~-----~~~~~  170 (422)
                      .|++||.+|+++|++||+++  +.+|...||.|+   ..+||+|||||+|||||+|+|++.+........     ....+
T Consensus        15 ~W~pGe~~A~~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~~~~~~~   89 (300)
T d1u3da1          15 AWSPGWSNGDKALTTFINGP--LLEYSKNRRKAD---SATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEES   89 (300)
T ss_dssp             HCCCSHHHHHHHHHHHHTTG--GGGTTTTTTCSS---STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHhh--HHHHhhhcCCCC---ccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhcccccccc
Confidence            38899999999999999865  999999999987   468999999999999999999999865432110     01123


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHH
Q 014577          171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA  250 (422)
Q Consensus       171 ~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vA  250 (422)
                      .+.|++||+||||++++++++|........+....++|+.|++.+++|++|+||+||||||||||++|||||||+||+||
T Consensus        90 ~~~fi~eL~wRef~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr~Rm~va  169 (300)
T d1u3da1          90 VNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS  169 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhccccccCHHHHHHHHhhcccchHHHHHHHHHHhhchhHHHHHHHHH
Confidence            56799999999999999998887776666666778899999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhhhcccccCCCC
Q 014577          251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPK  329 (422)
Q Consensus       251 sFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~  329 (422)
                      ||||+ +|+|||+.|++||+++|||||+++|++||||+| +|+++.+|+|||||++|+++|||+|+|||+|||||+++|+
T Consensus       170 Sfl~~-~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL~~~p~  248 (300)
T d1u3da1         170 SFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPT  248 (300)
T ss_dssp             HHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCH
T ss_pred             HHHHH-HcccchhhHHHHHHHHHhccchhhHHHHHHHHHhcccchhhccccccHHHHHHHhcCcchHHHHhChhhhcCCH
Confidence            99999 999999999999999999999999999999999 5677889999999999999999999999999999999999


Q ss_pred             CcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 014577          330 EYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYAL  378 (422)
Q Consensus       330 ~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~  378 (422)
                      ++||+||++|..+|..+||.+|.+||.|||||+++|++|+++++..++.
T Consensus       249 ~~ih~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~~  297 (300)
T d1u3da1         249 DWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL  297 (300)
T ss_dssp             HHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877766543
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure