Citrus Sinensis ID: 014588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS
cHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccEEEccHHHHHHHHHHHHcccccccccccccEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEcccccHHHHHHHHccccEEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccEEEEEEccccccccccccHHHHHccccccccHHHHHHHHccccEEEcccccHHHHcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccEEEcccHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHccccccEEEEEccccccHHHcEEccccEccEEEEccHHHHHHHHcccccEEEccccccccEEcccEEEEEcccccEEEEEEEEEEHHHcEEEEEEEccccccHHHHHHHcHHHcEEEEcEcccEccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEcccEEEEccEEEEEcHHHHHHcHHHHHccccccccHHHHHHHHcccEEEEccccEEEEEccHHHHHHHHHHHHHccccEcEEEEccccccHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHcccccEEEcccHHHHHHHHHHcccc
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYginvpkglavASVDEVKKAIQDAFPDHKELVVKSQIlaggrglgtfksglkggvhivKKEEVEDLAGKMLGQILVtkqtgpqgkivSKVYLCEKLSLVNEMYFAIMLDrktagpiiigcskggtsiedLAEKYPNMIVKVPidvfngitdedaakvvdglapkvadrnDAIEQVKKLYKLFCesdctlleinplaetsgKQLVAADaklnfddnAAFRQKEIfalrdptqedprEVAAAKADLnyigldgeigcmvngagLAMATMDIIKlhggtpanfldvggnasegQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVrlegtnvdqGKRILKESGMTLITAEDLDDAAEKAVKAIAS
mvrgllnklvsrsltvagqwqqqqLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQdafpdhkelVVKSQILaggrglgtfksglkggvHIVKKEEVEDLAGKMLGQILVtkqtgpqgkivSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIfalrdptqedprEVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKvpvvvrlegtnvdqgkrilkesgmtlitaedlddaAEKAVKAIAS
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS
*****LNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFAL**********VAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLIT*****************
*********************Q**LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA*
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRD********VAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDD***********
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
O82662421 Succinyl-CoA ligase [ADP- yes no 0.995 0.997 0.869 0.0
Q6K9N6422 Succinyl-CoA ligase [ADP- yes no 0.992 0.992 0.875 0.0
Q84LB6417 Succinyl-CoA ligase [ADP- N/A no 0.988 1.0 0.863 0.0
Q55AI5445 Succinyl-CoA ligase [ADP- yes no 0.931 0.883 0.558 1e-125
Q869S7420 Succinyl-CoA ligase [GDP- no no 0.933 0.938 0.576 1e-123
Q148D5463 Succinyl-CoA ligase [ADP- yes no 0.943 0.859 0.538 1e-117
Q9YI37413 Succinyl-CoA ligase [ADP- N/A no 0.926 0.946 0.538 1e-116
O97580425 Succinyl-CoA ligase [ADP- yes no 0.921 0.915 0.545 1e-116
Q9Z2I9463 Succinyl-CoA ligase [ADP- yes no 0.921 0.840 0.540 1e-116
Q9P2R7463 Succinyl-CoA ligase [ADP- yes no 0.921 0.840 0.545 1e-116
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1 Back     alignment and function desciption
 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/420 (86%), Positives = 402/420 (95%)

Query: 2   VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
           +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKA
Sbjct: 1   MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60

Query: 62  IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121
           IQD FP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQT
Sbjct: 61  IQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQT 120

Query: 122 GPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181
           GPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+K
Sbjct: 121 GPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIK 180

Query: 182 VPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG 241
           VPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LEINPLAETS 
Sbjct: 181 VPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETST 240

Query: 242 KQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGA 301
            QLVAADAKLNFDDNAAFRQKE+FA+RDPTQEDPREVAAAK DLNYIGLDGEIGCMVNGA
Sbjct: 241 NQLVAADAKLNFDDNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNGA 300

Query: 302 GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCD 361
           GLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKCD
Sbjct: 301 GLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCD 360

Query: 362 VIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421
           VIASGIVNAAK+VALKVPVVVRLEGTNV+QGKRILKESGM LITA+DLDDAAEKAVKA+A
Sbjct: 361 VIASGIVNAAKEVALKVPVVVRLEGTNVEQGKRILKESGMKLITADDLDDAAEKAVKALA 420

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5
>sp|Q6K9N6|SUCB_ORYSJ Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1 Back     alignment and function description
>sp|Q84LB6|SUCB_SOLLC Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1 Back     alignment and function description
>sp|Q55AI5|SUCB1_DICDI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1 Back     alignment and function description
>sp|Q869S7|SUCB2_DICDI Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsB PE=3 SV=1 Back     alignment and function description
>sp|Q148D5|SUCB1_BOVIN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9YI37|SUCB1_COLLI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Columba livia GN=SUCLA2 PE=1 SV=1 Back     alignment and function description
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2 Back     alignment and function description
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
TAIR|locus:2039037421 AT2G20420 [Arabidopsis thalian 0.995 0.997 0.869 3.9e-195
UNIPROTKB|Q84LB6417 Q84LB6 "Succinyl-CoA ligase [A 0.988 1.0 0.863 3.6e-192
DICTYBASE|DDB_G0271842445 scsC "succinate-CoA ligase (AD 0.931 0.883 0.560 6.4e-115
DICTYBASE|DDB_G0274449420 scsB "succinate-CoA ligase (GD 0.933 0.938 0.573 9.4e-114
UNIPROTKB|Q5F3B9463 SUCLA2 "Uncharacterized protei 0.938 0.855 0.550 5.2e-113
UNIPROTKB|O97580425 SUCLA2 "Succinyl-CoA ligase [A 0.938 0.931 0.548 1.6e-111
UNIPROTKB|F1RK10463 SUCLA2 "Succinyl-CoA ligase [A 0.938 0.855 0.545 2e-111
UNIPROTKB|Q9P2R7463 SUCLA2 "Succinyl-CoA ligase [A 0.938 0.855 0.548 4.2e-111
MGI|MGI:1306775463 Sucla2 "succinate-Coenzyme A l 0.938 0.855 0.543 8.7e-111
RGD|1309397437 Sucla2 "succinate-CoA ligase, 0.938 0.906 0.535 1.1e-110
TAIR|locus:2039037 AT2G20420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1890 (670.4 bits), Expect = 3.9e-195, P = 3.9e-195
 Identities = 365/420 (86%), Positives = 402/420 (95%)

Query:     2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
             +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKA
Sbjct:     1 MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60

Query:    62 IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121
             IQD FP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQT
Sbjct:    61 IQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQT 120

Query:   122 GPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181
             GPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+K
Sbjct:   121 GPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIK 180

Query:   182 VPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG 241
             VPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LEINPLAETS 
Sbjct:   181 VPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETST 240

Query:   242 KQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGA 301
              QLVAADAKLNFDDNAAFRQKE+FA+RDPTQEDPREVAAAK DLNYIGLDGEIGCMVNGA
Sbjct:   241 NQLVAADAKLNFDDNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNGA 300

Query:   302 GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCD 361
             GLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKCD
Sbjct:   301 GLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCD 360

Query:   362 VIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421
             VIASGIVNAAK+VALKVPVVVRLEGTNV+QGKRILKESGM LITA+DLDDAAEKAVKA+A
Sbjct:   361 VIASGIVNAAKEVALKVPVVVRLEGTNVEQGKRILKESGMKLITADDLDDAAEKAVKALA 420
GO:0003824 "catalytic activity" evidence=IEA
GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016874 "ligase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
UNIPROTKB|Q84LB6 Q84LB6 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271842 scsC "succinate-CoA ligase (ADP-forming)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274449 scsB "succinate-CoA ligase (GDP-forming) beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3B9 SUCLA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O97580 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK10 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P2R7 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1306775 Sucla2 "succinate-Coenzyme A ligase, ADP-forming, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309397 Sucla2 "succinate-CoA ligase, ADP-forming, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5VSQ3SUCC_BRUO26, ., 2, ., 1, ., 50.52890.92650.9824yesno
Q57AX2SUCC_BRUAB6, ., 2, ., 1, ., 50.52890.92650.9824yesno
Q2W063SUCC_MAGSA6, ., 2, ., 1, ., 50.52020.92650.9824yesno
Q9YI36SUCB2_COLLI6, ., 2, ., 1, ., 40.52750.89570.9667N/Ano
B0CIT0SUCC_BRUSI6, ., 2, ., 1, ., 50.52890.92650.9824yesno
A8FD73SUCC_BACP26, ., 2, ., 1, ., 50.50500.90990.9948yesno
A1AZH7SUCC_PARDP6, ., 2, ., 1, ., 50.52890.92650.9848yesno
P53588SUCB1_CAEEL6, ., 2, ., 1, ., 50.49160.96440.9356yesno
Q3IZ84SUCC_RHOS46, ., 2, ., 1, ., 50.51380.92650.9848yesno
Q9YI37SUCB1_COLLI6, ., 2, ., 1, ., 50.53800.92650.9467N/Ano
B4RCH3SUCC_PHEZH6, ., 2, ., 1, ., 50.50500.92410.9774yesno
A7HT39SUCC_PARL16, ., 2, ., 1, ., 50.51130.90750.9845yesno
P66868SUCC_BRUSU6, ., 2, ., 1, ., 50.52890.92650.9824yesno
A9IZV3SUCC_BART16, ., 2, ., 1, ., 50.51380.92650.9824yesno
A1UQV9SUCC_BARBK6, ., 2, ., 1, ., 50.52640.92650.9824yesno
Q6FYD1SUCC_BARQU6, ., 2, ., 1, ., 50.50370.92650.9824yesno
B2UMH5SUCC_AKKM86, ., 2, ., 1, ., 50.54020.90520.9720yesno
A6UDP2SUCC_SINMW6, ., 2, ., 1, ., 50.51880.92650.9824yesno
P66867SUCC_BRUME6, ., 2, ., 1, ., 50.52890.92650.9824yesno
Q9P567SUCB_NEUCR6, ., 2, ., 1, ., 40.50850.95730.9038N/Ano
O82662SUCB_ARATH6, ., 2, ., 1, ., 50.86900.99520.9976yesno
C4L610SUCC_EXISA6, ., 2, ., 1, ., 50.51150.89810.9818yesno
Q9P2R7SUCB1_HUMAN6, ., 2, ., 1, ., 50.54540.92180.8401yesno
B1YIL7SUCC_EXIS26, ., 2, ., 1, ., 50.51670.89810.9818yesno
Q4R517SUCB1_MACFA6, ., 2, ., 1, ., 50.53280.92180.8401N/Ano
Q6K9N6SUCB_ORYSJ6, ., 2, ., 1, ., 50.87580.99280.9928yesno
A3PN13SUCC_RHOS16, ., 2, ., 1, ., 50.51380.92650.9848yesno
Q55AI5SUCB1_DICDI6, ., 2, ., 1, ., 50.55800.93120.8831yesno
Q11CV8SUCC_MESSB6, ., 2, ., 1, ., 50.50870.93120.9899yesno
Q6G1M1SUCC_BARHE6, ., 2, ., 1, ., 50.51380.92650.9824yesno
A9M8R2SUCC_BRUC26, ., 2, ., 1, ., 50.52890.92650.9824yesno
Q148D5SUCB1_BOVIN6, ., 2, ., 1, ., 50.53860.94310.8596yesno
C0RFH1SUCC_BRUMB6, ., 2, ., 1, ., 50.52890.92650.9824yesno
Q84LB6SUCB_SOLLC6, ., 2, ., 1, ., 50.86330.98811.0N/Ano
B2S880SUCC_BRUA16, ., 2, ., 1, ., 50.52890.92650.9824yesno
Q9Z2I9SUCB1_MOUSE6, ., 2, ., 1, ., 50.54040.92180.8401yesno
B9KNB3SUCC_RHOSK6, ., 2, ., 1, ., 50.51380.92650.9848yesno
O94415SUCB_SCHPO6, ., 2, ., 1, ., 40.47970.93120.9076yesno
A6WXE8SUCC_OCHA46, ., 2, ., 1, ., 50.52640.92650.9824yesno
B1ZP17SUCC_OPITP6, ., 2, ., 1, ., 50.50880.92890.9974yesno
O97580SUCB1_PIG6, ., 2, ., 1, ., 50.54540.92180.9152yesno
A4WNM6SUCC_RHOS56, ., 2, ., 1, ., 50.51630.92650.9848yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.2.10.998
4th Layer6.2.1.50.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
PLN00124422 PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi 0.0
PRK00696388 PRK00696, sucC, succinyl-CoA synthetase subunit be 0.0
COG0045387 COG0045, SucC, Succinyl-CoA synthetase, beta subun 1e-163
TIGR01016386 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be 1e-150
PRK14046392 PRK14046, PRK14046, malate--CoA ligase subunit bet 1e-141
pfam08442202 pfam08442, ATP-grasp_2, ATP-grasp domain 1e-65
pfam00549128 pfam00549, Ligase_CoA, CoA-ligase 8e-37
PLN02235423 PLN02235, PLN02235, ATP citrate (pro-S)-lyase 6e-07
TIGR02717447 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synt 8e-05
>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information 
 Score =  808 bits (2088), Expect = 0.0
 Identities = 368/422 (87%), Positives = 399/422 (94%)

Query: 1   MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60
           M+RGLLNKL SRSL+VAG+WQ QQLRRLNIHEYQGAELM+KYG+NVPKG A +S+DEVKK
Sbjct: 1   MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKK 60

Query: 61  AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQ 120
           A++  FPD  E+VVKSQILAGGRGLGTFK+GLKGGVHIVKK++ E+LAGKMLGQILVTKQ
Sbjct: 61  ALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKKDKAEELAGKMLGQILVTKQ 120

Query: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180
           TGP GK V+KVYLCEK+SLVNEMYFAI+LDR +AGP+II CSKGGTSIEDLAEK+P  I+
Sbjct: 121 TGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKII 180

Query: 181 KVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 240
           KVPID+F GITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFC+ DCT++EINPLAET+
Sbjct: 181 KVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETA 240

Query: 241 GKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNG 300
             QLVAADAKLNFDDNAAFRQKEIFALRD +QEDPREVAAAKADLNYIGLDGEIGCMVNG
Sbjct: 241 DGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNG 300

Query: 301 AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360
           AGLAMATMDIIKLHGG+PANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKC
Sbjct: 301 AGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKC 360

Query: 361 DVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
           DVIASGIVNAAKQV LKVP+VVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKA+
Sbjct: 361 DVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAL 420

Query: 421 AS 422
           A 
Sbjct: 421 AI 422

Length = 422
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase Back     alignment and domain information
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase Back     alignment and domain information
>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 100.0
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 100.0
PRK14046392 malate--CoA ligase subunit beta; Provisional 100.0
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 100.0
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 100.0
PLN02235423 ATP citrate (pro-S)-lyase 100.0
KOG1447412 consensus GTP-specific succinyl-CoA synthetase, be 100.0
KOG2799434 consensus Succinyl-CoA synthetase, beta subunit [E 100.0
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 100.0
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 100.0
COG1042 598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.88
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 99.83
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 99.55
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 99.35
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.28
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 99.24
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.14
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.09
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 99.09
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 99.07
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.07
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 99.05
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.04
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 99.03
PLN02735 1102 carbamoyl-phosphate synthase 99.02
PLN02257434 phosphoribosylamine--glycine ligase 99.02
PRK08654499 pyruvate carboxylase subunit A; Validated 99.01
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 99.0
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 98.99
PLN027351102 carbamoyl-phosphate synthase 98.96
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 98.96
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 98.95
PRK07178472 pyruvate carboxylase subunit A; Validated 98.94
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 98.94
PRK14569296 D-alanyl-alanine synthetase A; Provisional 98.93
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 98.93
PRK08462445 biotin carboxylase; Validated 98.92
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 98.9
PLN02948577 phosphoribosylaminoimidazole carboxylase 98.88
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 98.85
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 98.84
PRK05586447 biotin carboxylase; Validated 98.83
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 98.83
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 98.8
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 98.8
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 98.8
KOG0237 788 consensus Glycinamide ribonucleotide synthetase (G 98.74
PRK06524493 biotin carboxylase-like protein; Validated 98.74
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 98.73
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 98.72
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 98.72
PRK10446300 ribosomal protein S6 modification protein; Provisi 98.71
PRK12999 1146 pyruvate carboxylase; Reviewed 98.71
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 98.7
PRK052941066 carB carbamoyl phosphate synthase large subunit; R 98.7
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 98.7
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 98.69
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 98.69
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 98.68
PRK14016 727 cyanophycin synthetase; Provisional 98.65
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 98.64
PRK14572347 D-alanyl-alanine synthetase A; Provisional 98.61
PRK14571299 D-alanyl-alanine synthetase A; Provisional 98.59
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 98.58
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 98.57
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 98.57
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 98.57
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 98.55
PRK07206416 hypothetical protein; Provisional 98.53
PRK14570364 D-alanyl-alanine synthetase A; Provisional 98.52
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 98.52
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 98.49
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 98.46
PRK02186 887 argininosuccinate lyase; Provisional 98.42
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 98.35
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 98.34
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 98.33
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 98.32
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 98.28
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 98.27
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 98.26
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 98.26
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 98.25
KOG1254 600 consensus ATP-citrate lyase [Energy production and 98.21
PRK06849389 hypothetical protein; Provisional 98.12
PLN02522 608 ATP citrate (pro-S)-lyase 98.04
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 98.02
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 97.93
KOG0238 670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 97.9
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 97.87
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 97.87
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 97.82
PRK06091 555 membrane protein FdrA; Validated 97.82
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 97.8
TIGR02717 447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 97.74
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 97.74
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 97.63
KOG0370 1435 consensus Multifunctional pyrimidine synthesis pro 97.53
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 97.39
COG3919415 Predicted ATP-grasp enzyme [General function predi 96.96
KOG1255329 consensus Succinyl-CoA synthetase, alpha subunit [ 96.88
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 96.74
KOG0369 1176 consensus Pyruvate carboxylase [Energy production 96.7
PLN02941328 inositol-tetrakisphosphate 1-kinase 96.61
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 95.8
PRK12458338 glutathione synthetase; Provisional 95.41
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 94.59
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 94.38
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 94.33
PRK05246316 glutathione synthetase; Provisional 94.2
KOG03701435 consensus Multifunctional pyrimidine synthesis pro 93.99
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 93.46
COG0054152 RibH Riboflavin synthase beta-chain [Coenzyme meta 91.83
PRK12419158 riboflavin synthase subunit beta; Provisional 90.76
PRK06091555 membrane protein FdrA; Validated 90.73
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 89.73
TIGR00237 432 xseA exodeoxyribonuclease VII, large subunit. This 89.6
COG2232389 Predicted ATP-dependent carboligase related to bio 88.1
PRK02261137 methylaspartate mutase subunit S; Provisional 88.04
PRK10949 618 protease 4; Provisional 87.13
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 86.68
PLN02404141 6,7-dimethyl-8-ribityllumazine synthase 86.38
PRK00061154 ribH 6,7-dimethyl-8-ribityllumazine synthase; Prov 85.8
PF00885144 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synt 85.43
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 85.02
PRK00286 438 xseA exodeoxyribonuclease VII large subunit; Revie 84.73
TIGR01506151 ribC_arch riboflavin synthase. This archaeal prote 84.62
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 83.88
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 83.83
COG0616 317 SppA Periplasmic serine proteases (ClpP class) [Po 83.75
TIGR00114138 lumazine-synth 6,7-dimethyl-8-ribityllumazine synt 83.64
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 83.49
PF1028138 Ish1: Putative stress-responsive nuclear envelope 81.91
TIGR00705 584 SppA_67K signal peptide peptidase SppA, 67K type. 80.59
PLN02775 286 Probable dihydrodipicolinate reductase 80.14
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-84  Score=655.44  Aligned_cols=418  Identities=87%  Similarity=1.276  Sum_probs=396.2

Q ss_pred             CchhhhhhhhhccccccchhHHhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCC--CCeEEEEEee
Q 014588            1 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPD--HKELVVKSQI   78 (422)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g--~~PvVlK~~~   78 (422)
                      |.+|..+++.+....+.+.++.+|.++|.|+||++|+||++||||+|++.+++|++|+.++++++  +  .+|+|+|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l--~~~~~pvVvKaqv   78 (422)
T PLN00124          1 MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKM--FPDEGEVVVKSQI   78 (422)
T ss_pred             CchhHHHHHHHhhhhhhchhhhhcccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh--cccCCcEEEEEEe
Confidence            67889999999888888888888899999999999999999999999999999999999999998  5  4799999999


Q ss_pred             ccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCce
Q 014588           79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI  157 (422)
Q Consensus        79 ~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpv  157 (422)
                      +.|||||+||||+++|||+++ + +++++++++|+++.+.++|+++.|..+++|+|+|+..++.|+|+|+++||..+||+
T Consensus        79 ~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpv  157 (422)
T PLN00124         79 LAGGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPL  157 (422)
T ss_pred             ccCCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcE
Confidence            999999999999889999999 7 99999999999987666777677888999998888888999999999999545999


Q ss_pred             eeeccCCCceeeeccccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeE
Q 014588          158 IIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLA  237 (422)
Q Consensus       158 i~~g~~GGi~iE~~~d~~~d~~~~~~i~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~  237 (422)
                      ++++..||++||.+.+++||.+++++++|..+++++++++|+++|++++.+.+++++++.+||++|.++++.++|||||+
T Consensus       158 il~s~~GGv~IEeva~~~pd~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~  237 (422)
T PLN00124        158 IIACSKGGTSIEDLAEKFPEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLA  237 (422)
T ss_pred             EEEECCCCccHHHhhhhCchheeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceE
Confidence            97666999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcEEEEeeEEeeCCCccccchhhcccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCC
Q 014588          238 ETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGT  317 (422)
Q Consensus       238 v~~~g~~~alDa~i~ld~~a~~r~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~  317 (422)
                      ++++|+++|+|||+.+||+|.|||++++.+++..++++.|..|...+++|++++|+||+|+||+|++|.|+|++..+|++
T Consensus       238 vt~~G~~valDAKi~~DdnA~~R~~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg~  317 (422)
T PLN00124        238 ETADGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGS  317 (422)
T ss_pred             EccCCCEEEEEEEECcCCchhhcChhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHH
Q 014588          318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILK  397 (422)
Q Consensus       318 ~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~  397 (422)
                      |+||+|++|+++.++++++++++++||++++||||++||+++||.+|++|++++++.+.++|||+++.|++.++++++|+
T Consensus       318 pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~  397 (422)
T PLN00124        318 PANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILK  397 (422)
T ss_pred             cceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998777899999999999999999999


Q ss_pred             HcCCCcccccCHHHHHHHHHHHhh
Q 014588          398 ESGMTLITAEDLDDAAEKAVKAIA  421 (422)
Q Consensus       398 ~~Gip~~vf~~~e~Av~al~~~~~  421 (422)
                      +.|+++++|+++++|++.+++++.
T Consensus       398 ~~~~~~~~~~~l~~A~~~~v~~~~  421 (422)
T PLN00124        398 ESGMTLITAEDLDDAAEKAVKALA  421 (422)
T ss_pred             hCCCCeEEcCCHHHHHHHHHHHhc
Confidence            999998999999999999998874

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism] Back     alignment and domain information
>PRK12419 riboflavin synthase subunit beta; Provisional Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>PRK10949 protease 4; Provisional Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase Back     alignment and domain information
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional Back     alignment and domain information
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>TIGR01506 ribC_arch riboflavin synthase Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [] Back     alignment and domain information
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type Back     alignment and domain information
>PLN02775 Probable dihydrodipicolinate reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
2fp4_B395 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 1e-107
1eud_B396 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 1e-106
1euc_B396 Crystal Structure Of Dephosphorylated Pig Heart, Gt 1e-106
1scu_B388 The Crystal Structure Of Succinyl-Coa Synthetase Fr 1e-84
1cqi_B385 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 2e-84
1jll_B388 Crystal Structure Analysis Of The E197betaa Mutant 7e-84
3ufx_B397 Thermus Aquaticus Succinyl-coa Synthetase In Comple 4e-57
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395 Back     alignment and structure 
Iteration: 1

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/394 (51%), Positives = 270/394 (68%), Gaps = 3/394 (0%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58
Query: 88  FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  EV   LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 59  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
             +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 238
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           + D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 239 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 298
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
              E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++ LKVP+VVRLEG
Sbjct: 299 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEG 358
Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
           TNV + + IL  SG+ + +A DL+DAA+KAV ++
Sbjct: 359 TNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 392
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388 Back     alignment and structure
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385 Back     alignment and structure
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388 Back     alignment and structure
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 397 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 0.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 0.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 0.0
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-149
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 1e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2csu_A457 457AA long hypothetical protein; structural genomi 4e-05
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 Back     alignment and structure
 Score =  647 bits (1671), Expect = 0.0
 Identities = 201/394 (51%), Positives = 270/394 (68%), Gaps = 3/394 (0%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58

Query: 88  FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  E V  LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 59  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118

Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178

Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
             +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 238

Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           + D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 239 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 298

Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
              E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++ LKVP+VVRLEG
Sbjct: 299 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEG 358

Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
           TNV + + IL  SG+ + +A DL+DAA+KAV ++
Sbjct: 359 TNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 392
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397 Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 100.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 100.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 100.0
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
1wr2_A238 Hypothetical protein PH1789; structural genomics, 100.0
2csu_A457 457AA long hypothetical protein; structural genomi 99.9
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 99.75
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 99.24
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.2
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 99.17
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.15
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.15
3ouz_A446 Biotin carboxylase; structural genomics, center fo 99.13
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 99.13
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.11
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.1
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 99.09
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.05
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 99.04
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.03
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 99.0
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 98.98
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 98.98
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 98.92
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 98.92
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 98.91
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 98.9
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 98.89
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 98.89
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 98.87
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 98.87
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 98.87
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 98.84
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 98.84
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 98.83
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 98.82
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 98.81
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 98.81
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 98.81
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 98.81
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 98.8
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 98.78
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 98.78
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 98.77
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 98.76
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 98.75
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 98.74
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 98.74
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 98.73
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 98.72
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 98.7
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 98.68
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 98.67
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 98.66
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 98.61
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 98.57
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 98.54
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 98.51
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 98.49
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.41
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 98.41
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 98.4
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 98.39
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 98.14
3dmy_A 480 Protein FDRA; predicted actyl-COA synthetase, nysg 98.11
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 98.08
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 98.02
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 98.01
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 98.0
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 97.97
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 97.88
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 97.87
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 97.78
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 97.76
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 97.41
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 97.2
2csu_A 457 457AA long hypothetical protein; structural genomi 97.19
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 97.13
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 96.94
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 96.89
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 96.83
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 96.76
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 96.74
1c2y_A156 Protein (lumazine synthase); riboflavin biosynthes 87.57
1ydh_A216 AT5G11950; structural genomics, protein structure 86.71
3nq4_A156 6,7-dimethyl-8-ribityllumazine synthase; 30MER, ic 86.18
1hqk_A154 6,7-dimethyl-8-ribityllumazine synthase; analysi s 84.41
1rvv_A154 Riboflavin synthase; transferase, flavoprotein; HE 83.83
1kz1_A159 6,7-dimethyl-8-ribityllumazine synthase; riboflavi 81.7
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
Probab=100.00  E-value=4.6e-82  Score=640.93  Aligned_cols=392  Identities=51%  Similarity=0.830  Sum_probs=370.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCC-eEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (422)
Q Consensus        28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~-PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~  105 (422)
                      |+|+||++|++|++||||+|++.+++|++|+.++++++  | | |+|+|+++.+|||||+++||+..|||+++ |+++++
T Consensus         1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~l--g-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~   77 (395)
T 2fp4_B            1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--N-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG   77 (395)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--T-CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHH
T ss_pred             CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHc--C-CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHH
Confidence            78999999999999999999999999999999999999  8 8 89999999899999999998844999999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecC
Q 014588          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (422)
Q Consensus       106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~  185 (422)
                      +++++++++.+.++++++.|..+++++||+|++.++|+|+++.+|+.|++|++++|.+||++||.+..++||+++++|++
T Consensus        78 ~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~id  157 (395)
T 2fp4_B           78 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID  157 (395)
T ss_dssp             HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECC
T ss_pred             HHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecC
Confidence            99999988764455655567767899999999999999999999999955999999999999999987789999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhhc
Q 014588          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF  265 (422)
Q Consensus       186 p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~  265 (422)
                      |..++++++|++|++.+|+++.+.+++++++.+||++|.+.++.++|||||+++++|+++|+||++.+|++|.|||+++.
T Consensus       158 p~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~  237 (395)
T 2fp4_B          158 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF  237 (395)
T ss_dssp             TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchh
Confidence            99999999999999999999999999999999999999999999999999999998779999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCC
Q 014588          266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK  345 (422)
Q Consensus       266 ~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~  345 (422)
                      ++++..++++.|..|.+.+++|++++|||+||+||||++|+++|++..+|++|+||+|++|+++.+++.++++++++||+
T Consensus       238 ~~~d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~  317 (395)
T 2fp4_B          238 AMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPK  317 (395)
T ss_dssp             TTCCCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTT
T ss_pred             hhcCCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhhC
Q 014588          346 VKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS  422 (422)
Q Consensus       346 vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~~  422 (422)
                      +|+||||++|++++|+.+|++|+++.++.+.+||||++++|++.++++++|+++|+|++.|+++++|++++++++++
T Consensus       318 v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~~~~  394 (395)
T 2fp4_B          318 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASVTK  394 (395)
T ss_dssp             CCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHTTC-
T ss_pred             CCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHCCCceEeCCCHHHHHHHHHHHhhc
Confidence            99999999999999999999999999986668999999999989999999999999955559999999999999864
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1 Back     alignment and structure
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A Back     alignment and structure
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A* Back     alignment and structure
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A Back     alignment and structure
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d2nu7b1150 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta 8e-60
d1eucb1148 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta 1e-59
d2nu7b2238 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- 1e-55
d1eucb2246 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- 1e-51
d2csua3163 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chai 8e-17
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  189 bits (482), Expect = 8e-60
 Identities = 93/147 (63%), Positives = 118/147 (80%)

Query: 274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQV 333
           DPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V
Sbjct: 1   DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERV 60

Query: 334 VEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393
            EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A  +V + VPVVVRLEG N + G 
Sbjct: 61  TEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGA 120

Query: 394 RILKESGMTLITAEDLDDAAEKAVKAI 420
           + L +SG+ +I A+ L DAA++ V A+
Sbjct: 121 KKLADSGLNIIAAKGLTDAAQQVVAAV 147
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148 Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 99.89
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.39
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 99.36
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.32
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 99.25
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 99.24
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 99.08
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 99.04
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 98.97
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 98.94
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 98.71
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 98.63
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 98.58
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 98.45
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 98.42
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 98.33
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 98.32
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.99
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.85
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.39
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 96.84
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 94.49
d1c2ya_155 Lumazine synthase {Spinach (Spinacia oleracea) [Ta 88.25
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 88.01
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 87.89
d1rvv1_154 Lumazine synthase {Bacillus subtilis [TaxId: 1423] 83.43
d1nqua_154 Lumazine synthase {Aquifex aeolicus [TaxId: 63363] 82.16
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 82.02
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 80.38
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-47  Score=359.21  Aligned_cols=235  Identities=34%  Similarity=0.541  Sum_probs=215.4

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (422)
Q Consensus        28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~  106 (422)
                      |+|+|||||+||++||||+|++.+++|++|+.++++++  |++|||+|+|...+||+|       +|||+++ +.+++.+
T Consensus         1 m~L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~i--G~~pvVlKaq~~~~hk~~-------~GGV~~~~~~~e~~~   71 (238)
T d2nu7b2           1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKI--GAGPWVVKCQVHAGGRGK-------AGGVKVVNSKEDIRA   71 (238)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--CSSCEEEEECCSSSCTTT-------TTCEEEECSHHHHHH
T ss_pred             CchhHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHh--CCCcEEEEEeeccccccc-------ceEEEeccccHHHHH
Confidence            78999999999999999999999999999999999999  833999999876788887       5999999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec-cCCCceeeeccccCCCeEEEEecC
Q 014588          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC-SKGGTSIEDLAEKYPNMIVKVPID  185 (422)
Q Consensus       107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g-~~GGi~iE~~~d~~~d~~~~~~i~  185 (422)
                      ++.+++++...+.+..+.|..+.+++||+|+++++|+|+|+..|+.| ||++++| ..||+++|.+.+.+|..+...+++
T Consensus        72 ~a~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~-g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~  150 (238)
T d2nu7b2          72 FAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSS-RRVVFMASTEGGVEIEKVAEETPHLIHKVALD  150 (238)
T ss_dssp             HHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTT-TEEEEEEESCTTSCHHHHHHHCGGGEEEEECC
T ss_pred             HHHHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccC-CceEEEEecccceeeEeeeccccccccccccC
Confidence            99999887766666777788899999999999999999999999999 7777766 359999999988888888888999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhhc
Q 014588          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF  265 (422)
Q Consensus       186 p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~  265 (422)
                      |..++....+.+++..+|.++.+..++++++.++++++.+.++.++|||||+++++|+++|+||||++||||.|||+++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~lEINPLiv~~~G~vvAlDAki~lDdnA~fr~~~~~  230 (238)
T d2nu7b2         151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR  230 (238)
T ss_dssp             TTTCCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHH
T ss_pred             cccccchhhHHHHHHhcCCcchhhHHHHHHHHHhhHhhhcCCceEEeecceEECCCCCEEEEEeEEeecCcchhcChhHH
Confidence            99999999999999999999999999999999999999999999999999999999989999999999999999999998


Q ss_pred             ccCCCCC
Q 014588          266 ALRDPTQ  272 (422)
Q Consensus       266 ~~~~~~~  272 (422)
                      .++|..+
T Consensus       231 ~~~d~~~  237 (238)
T d2nu7b2         231 EMRDQSQ  237 (238)
T ss_dssp             HTCCGGG
T ss_pred             hhcCcCC
Confidence            8887553
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure