Citrus Sinensis ID: 014658
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | 2.2.26 [Sep-21-2011] | |||||||
| A1AK01 | 493 | Cysteine--tRNA ligase OS= | yes | no | 0.909 | 0.776 | 0.474 | 2e-94 | |
| B3E1P0 | 487 | Cysteine--tRNA ligase OS= | yes | no | 0.904 | 0.782 | 0.464 | 4e-91 | |
| Q3J8Y9 | 485 | Cysteine--tRNA ligase OS= | yes | no | 0.881 | 0.764 | 0.446 | 1e-89 | |
| Q6AJ23 | 489 | Cysteine--tRNA ligase OS= | yes | no | 0.897 | 0.773 | 0.434 | 2e-89 | |
| Q31H54 | 456 | Cysteine--tRNA ligase OS= | yes | no | 0.831 | 0.767 | 0.453 | 1e-87 | |
| B9LZV4 | 494 | Cysteine--tRNA ligase OS= | yes | no | 0.888 | 0.757 | 0.446 | 1e-87 | |
| Q39ZL8 | 485 | Cysteine--tRNA ligase OS= | yes | no | 0.904 | 0.785 | 0.431 | 2e-87 | |
| A5G949 | 494 | Cysteine--tRNA ligase OS= | yes | no | 0.912 | 0.777 | 0.437 | 3e-87 | |
| B8GNT5 | 460 | Cysteine--tRNA ligase OS= | yes | no | 0.843 | 0.771 | 0.446 | 8e-87 | |
| Q747A2 | 481 | Cysteine--tRNA ligase OS= | yes | no | 0.895 | 0.783 | 0.436 | 2e-86 |
| >sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1 | Back alignment and function desciption |
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Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/398 (47%), Positives = 247/398 (62%), Gaps = 15/398 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PT +P+ +DHM I +I +I AY +GDV++AVE P+Y RLSG+ L
Sbjct: 101 MARLGLAKPTVEPKATDHMGGIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ AG RV VD RKRNP DFALWK +K GEPSWDSPWG GRPGWHIECSAMS YL
Sbjct: 161 EDMLAGARVEVDDRKRNPMDFALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKT 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA V YWMHNG V N+EKMSKSLGNFFTIR++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGCQFVRYWMHNGFVNINSEKMSKSLGNFFTIREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS----PFQEH 236
E+Y P LR F++SAHYRSP+++S L+ A + IY L + A+ P Q
Sbjct: 281 LEQYDPETLRFFILSAHYRSPIDFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPV 340
Query: 237 GKTARINPAAEDCINKLR---DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293
+ A + PA + KL+ F M DD NT+ L G +A++ N + +
Sbjct: 341 -EGAPLPPAGAELHEKLQSLISRFREAMDDDFNTAQAL-GVLFEAVRATNRFMAESGDQT 398
Query: 294 PKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLI 353
P L+L+ +R++ E +VL + P A+ E ++Q K + E++ +++ QLI
Sbjct: 399 PA--TLALLGQVRRLFAETGDVLGLF-TSQPAAWLESIKQAKSDQM---EISPQEIEQLI 452
Query: 354 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
ERAAAR N+DF + D+IR L +KGI L+D + T W
Sbjct: 453 AERAAARTNRDFKRGDEIRDLLLQKGIQLLDSPQGTTW 490
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Pelobacter propionicus (strain DSM 2379) (taxid: 338966) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6 |
| >sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 184/396 (46%), Positives = 241/396 (60%), Gaps = 15/396 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L L PT +P+ +DH+E I +I ++I+N AY V+GDV+FAVE P Y +LSG+ L
Sbjct: 101 MDRLGMLRPTIEPKATDHIEDIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
++ AG RV VD RKRNP DFALWK +K GEP W+SPWG GRPGWHIECSAMS +L
Sbjct: 161 DDMLAGARVDVDERKRNPMDFALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPS 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS A V YW+HNG V N+EKMSKSLGNFFTIR++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEGANGCQFVKYWLHNGFVNINSEKMSKSLGNFFTIREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E + P LR F++ AHYRSPL+YS L A + IY+ L + AL E TA
Sbjct: 281 LELFDPETLRFFILQAHYRSPLDYSDQNLREAQAGLSRIYEALAALDQAL----EKPATA 336
Query: 241 RINPAA----EDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 296
PA+ + + L F M DD NT+ L G D+++ +N L +
Sbjct: 337 IHLPASAAEFAEKVAGLLPRFREAMDDDFNTAQAL-GTLFDSIRTLNRLLA--EGGGSSS 393
Query: 297 QQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEER 356
+ +E LR E+ VL + + P S+ L + + + E++ E++ LI ER
Sbjct: 394 ASRADLEQLRAAVTEIGAVLGLFRIKP----SDWLAAREAEKARHLEISPEEIEGLIVER 449
Query: 357 AAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AAARKNKDF +SD+IR L + I L+D + T W+
Sbjct: 450 AAARKNKDFKRSDEIRDYLLSRDIQLVDTPQGTAWK 485
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Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) (taxid: 398767) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=cysS PE=3 SV=1 | Back alignment and function description |
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Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/403 (44%), Positives = 238/403 (59%), Gaps = 32/403 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRL 60
A LQ LPP +PR ++ ME I M+ Q+++ AY E GD+++ V YG LSG+ L
Sbjct: 101 ASLQILPPDREPRATESMEAILAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ RAGERV V+ K +P DF LWKAAK+GEP+W+SPWGPGRPGWHIECSAMS L +
Sbjct: 161 EDLRAGERVQVNEAKTDPLDFVLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTH 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQS AA V+YWMHNG V N+EKMSKSLGNFFT+R++
Sbjct: 221 FDIHGGGQDLQFPHHENEIAQSEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E YHP LR+F++S+HYRSPLNY+ QLD+A A+ +Y L+ G +
Sbjct: 281 LEHYHPEVLRYFILSSHYRSPLNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSW 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
+ + + R+ M DD NT L L + +LN ++ ++ S
Sbjct: 341 EFTDGGDPFVLRFREA----MDDDFNTPEALA-----LLNEVRHALNRAREAGDTEKGQS 391
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDK-----------ALKRAELTEEDV 349
L LR + ILGLL E Q L+D A + A L+ + +
Sbjct: 392 LAVLLRSLGG-------ILGLLA----HEPEQFLRDSRQVAAIPDTAAAGEEAVLSHDGI 440
Query: 350 LQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
QL+ +R ARKNKD++++D+IR L +GI L D T+WR
Sbjct: 441 EQLVAQRTVARKNKDWAEADRIRGILKDQGITLEDTAAGTLWR 483
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Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/396 (43%), Positives = 246/396 (62%), Gaps = 18/396 (4%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M +L L P +P+ ++H++++ D+I ++++ D AY GDV++ V P YG+LSG+ +
Sbjct: 101 MDNLGTLRPDIEPKATEHIQEMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNI 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ +AG R++++ +KRNP DFALWKA+K GEPSW+SPWGPGRPGWHIECSAMS YL
Sbjct: 161 EDMQAGARISINEQKRNPMDFALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGEN 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS A + W+H+G VT +EKMSKSLGNF TI+ I
Sbjct: 221 FDIHGGGKDLIFPHHENEIAQSEGANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDI 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+ YHP LR F+ S YR+PL++S + + A A+ +Y+ L D Q+ K
Sbjct: 281 LDHYHPEILRAFIFSTQYRNPLDFSEIAMQDAETALVRLYECLHD-------IQQLAKGD 333
Query: 241 RINPA---AEDC--INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 295
PA A+D +N + F M++D NT+ L G DA+K IN + L P
Sbjct: 334 PTLPALISAKDAAKLNSIETRFQEAMNNDFNTALAL-GVLYDAIKIINRAQRALTDT-PS 391
Query: 296 QQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 355
+ +++ + ++++ I+GLL A + LQQ K+K L ++TE ++ I++
Sbjct: 392 ALDVKMLKGSMTL---IQKLAGIVGLLQEDA-NLFLQQRKEKMLSGIDITEAEIESYIQQ 447
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
R AR NKD+++SD+IR L KGI L D T W
Sbjct: 448 RLDARANKDWARSDEIRDILLEKGITLKDGADGTGW 483
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Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/390 (45%), Positives = 239/390 (61%), Gaps = 40/390 (10%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L L P +P+ +++M++I+ MI+ +I D AY E GDV+F V+ +YGRLSG+ +E
Sbjct: 104 LNVLRPDMEPKATEYMDEIETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEE 163
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+G RV ++S K++P DF LWKA+K EP+W SPWG GRPGWHIECSAMS L + FD
Sbjct: 164 LDSGSRVEINSVKKDPLDFVLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFD 223
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS A + V+ WMH G V ++EKMSKSLGNFFTIR++ +
Sbjct: 224 IHGGGLDLSFPHHENEIAQSECATGEHYVNSWMHCGFVRIDDEKMSKSLGNFFTIREVLK 283
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
+YHP +R+FL+++HYRSP+NYS LD A +V +Y L+ L P +
Sbjct: 284 QYHPEVIRYFLLASHYRSPVNYSEENLDVAKASVGRLYSALE-----LVPADQ------- 331
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
AE +KL EF A M+DD NT + F+ L K+ KQ+ L
Sbjct: 332 ---AEPAESKLEAEFMAAMNDDFNTPQAMAVLFE------------LAKEVNKQKSPGLA 376
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
L+K+ N++ GLL A S Q D ++LT+E + LI ERA ARK
Sbjct: 377 ALLKKLANQI-------GLLEQTAESFFKSQPSD-----SDLTDEMIEALIVERAEARKA 424
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKETIWR 392
KDFS+SD+IR +L +GI L+D + T WR
Sbjct: 425 KDFSRSDEIRDELLAQGIELLDSAEGTSWR 454
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Thiomicrospira crunogena (strain XCL-2) (taxid: 317025) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/392 (44%), Positives = 239/392 (60%), Gaps = 18/392 (4%)
Query: 9 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGER 68
PT QP+ ++H+++I ++ +I+ D AY GDV F VEK +Y +LSG+ LE+ +AG R
Sbjct: 109 PTCQPKATEHIDEIISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGAR 168
Query: 69 VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 128
+ VD RKR+P DFALWK AK GEP W+SPWG GRPGWHIECSAMS YL + FDIHGGG
Sbjct: 169 IEVDERKRHPMDFALWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGK 228
Query: 129 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLA 188
DLIFPHHENEIAQS AA V+YW+HNG V N+EKMSKSLGNFFTI+++ +RY
Sbjct: 229 DLIFPHHENEIAQSEAATGKPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLDRYDNEV 288
Query: 189 LRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT------ARI 242
LR FL+SAHYRSP+++S L A + IY+ L E L+ +G T + +
Sbjct: 289 LRFFLLSAHYRSPIDFSDQNLTEAEAGLERIYKALAAVEETLAA--GNGCTGAPVDASSL 346
Query: 243 NPAAEDCINK---LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
N A + +K + F M DD NT+ + F D ++ +N L+ L
Sbjct: 347 NEAEGELFDKTTSISARFGEAMDDDFNTALAMAHVF-DLVRCVNRVLSETAGASDNICSL 405
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
+ I+ EV ++ +LG+ S L++LK + ++ +++ +LI ER AA
Sbjct: 406 CTL-----IKAEVAKIAGVLGIFSSKPAS-FLERLKSRKAGNLDIAVDEIERLIAERTAA 459
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
RK KDF +SD+IR L K I L+D + T W
Sbjct: 460 RKAKDFKRSDEIRDQLAAKNIVLLDSQQGTTW 491
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Geobacter sp. (strain FRC-32) (taxid: 316067) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 238/394 (60%), Gaps = 13/394 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PT+QP+ ++H+ ++ D+I+++I AY +GDV+F VEK Y +LS + L
Sbjct: 101 MAALGLDLPTHQPKATEHIAEMIDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ +AG R+ V +KR+P DFALWK +K GEP W+SPWG GRPGWHIECSAMS YL
Sbjct: 161 DEMQAGARIEVGEKKRHPMDFALWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA YW+HNG V N+EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E+Y LR FL+SAHYRSP+++S L A + IY TL + L+ E
Sbjct: 281 LEKYDAEVLRFFLLSAHYRSPIDFSDQNLREAEAGLERIYGTLAGIDENLTKGAEGTAEE 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
AE + + F M DD NT+ L F + S+ +L + + +
Sbjct: 341 TDRELAEKAVT-FPERFREAMDDDFNTAQALGFVFD----LVRSANRVLGEGKGGGSNRA 395
Query: 301 LIESLRKIENEVKEVLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L+ R + +++V +LG+ P A++E +LK++ +T E++ +LI ER A
Sbjct: 396 LLAEAR---DRIRKVGAVLGIFTSEPRAFAE---RLKNRKAAELPITAEEIERLIAERIA 449
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AR N+DF ++D+IR L KGI L+D + T W+
Sbjct: 450 ARANRDFKRADEIRDSLAAKGIMLLDSPQGTTWK 483
|
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 174/398 (43%), Positives = 241/398 (60%), Gaps = 14/398 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L L PT QP+ ++H+ +I ++ +I+ AY + GDV F VEK Y +LS + L
Sbjct: 101 MAQLGLLLPTSQPKATEHIPEIITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ +AG R+ VD RKR+P DF LWK AK GEP W+SPWG GRPGWHIECSAMS YL
Sbjct: 161 EDMQAGARIEVDERKRHPMDFVLWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA V YW+HNG V N+EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG--- 237
++Y LR FL+SAHYRSPL++S L A + IY+ L + L+ G
Sbjct: 281 LDKYDSEVLRFFLLSAHYRSPLDFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEE 340
Query: 238 -KTARINPAAEDCINK---LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293
+ + A + +K L F M DD NT+ + G D ++ +N L+ +
Sbjct: 341 IDASSLGEAERELFDKSGSLPLRFREAMDDDFNTA-LAMGHIFDLVRCVNRVLS-----E 394
Query: 294 PKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLI 353
K++ +L +++ + ++ +LG+ S +L +LKD+ +++ E++ +LI
Sbjct: 395 AKERSNTLSALCAQVKANIGKIADVLGIFTSEPAS-LLTRLKDRKASELDISVEEIERLI 453
Query: 354 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
ERAAARK KDF +SD+IR L K I L+D + T W
Sbjct: 454 TERAAARKAKDFKRSDEIRDFLLGKNIVLLDSAQGTSW 491
|
Geobacter uraniireducens (strain Rf4) (taxid: 351605) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/390 (44%), Positives = 223/390 (57%), Gaps = 35/390 (8%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L LPP+ +PR ++H++ + MI ++ AY + GDV++AV K YGRLSG+RLE+
Sbjct: 103 LGVLPPSAEPRATEHIDGMLAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLED 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
RAGERVA D KR+P DF LWKAAK GEP+WDSPWGPGRPGWHIECSAMS HYL + FD
Sbjct: 163 LRAGERVAPDEAKRDPLDFVLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQS AA + V+YWMHNG V N EKMSKSLGNFFT+R++
Sbjct: 223 IHGGGQDLQFPHHENEIAQSEAATCEHFVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLA 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
RY +R+F++S+HYRSPLNYS LD+A + +Y L+ + +
Sbjct: 283 RYPAEVVRYFILSSHYRSPLNYSDEPLDAARAGLTRLYTALRGVQA-------------V 329
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
+PA + R F A M DD NT + F I LN L+ + P
Sbjct: 330 DPAGQG--EGYRRRFQAAMDDDFNTPVAMAVLFD-----IARELNRLRDEDPAGAAPLAG 382
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
L G + +L E + LI +R AARK
Sbjct: 383 LLRELGGMLGLLAGDPEAFLKGG--------------EAGDLDEAAIEALIAQRLAARKA 428
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKETIWR 392
KDF+++D+IR +L +G+ L D T WR
Sbjct: 429 KDFAEADRIRDELAGQGVVLEDGPGGTTWR 458
|
Thioalkalivibrio sp. (strain HL-EbGR7) (taxid: 396588) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q747A2|SYC_GEOSL Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 234/394 (59%), Gaps = 17/394 (4%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PTYQP+ ++H+ ++ +I +++ AY +GDV+F+VE Y +LS + L
Sbjct: 101 MAALGLDLPTYQPKATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E +AG R+ V +KR+P DFALWK +K GEP WDSPWG GRPGWHIECSAMS YL
Sbjct: 161 EEMQAGARIEVGEKKRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA YW+HNG V N EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E Y LR FL+SAHYRSP+++S L A+ + IY L + A++ +
Sbjct: 281 LESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAG 338
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
RI+ + L F M DD NT+ L F D ++ +N L + +
Sbjct: 339 RIDEELAEKAAGLPTRFREAMDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRA 391
Query: 301 LIESLRKIENEVKEVLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
++ S R+ + V +LGL PGA+ E L+ K AL + ++ +LIEER A
Sbjct: 392 VLASARE---AIDRVGAVLGLFTSEPGAFVERLKSRKAAALP---IEAAEIERLIEERNA 445
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
ARK +DF ++D+IR L +GI L+D + T W+
Sbjct: 446 ARKARDFRRADEIRDTLAAQGILLLDSAQGTTWK 479
|
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| 255585350 | 530 | cysteinyl-tRNA synthetase, putative [Ric | 0.983 | 0.781 | 0.759 | 0.0 | |
| 359475690 | 513 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.964 | 0.791 | 0.783 | 0.0 | |
| 359496172 | 513 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.964 | 0.791 | 0.786 | 0.0 | |
| 224111652 | 532 | predicted protein [Populus trichocarpa] | 0.978 | 0.774 | 0.762 | 0.0 | |
| 449464950 | 562 | PREDICTED: cysteine--tRNA ligase-like [C | 0.988 | 0.740 | 0.745 | 0.0 | |
| 356575566 | 553 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.992 | 0.755 | 0.691 | 1e-171 | |
| 357444709 | 552 | Cysteinyl-tRNA synthetase [Medicago trun | 0.938 | 0.715 | 0.735 | 1e-171 | |
| 356536300 | 548 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.969 | 0.744 | 0.699 | 1e-169 | |
| 15241557 | 511 | cysteinyl-tRNA synthetase [Arabidopsis t | 0.933 | 0.769 | 0.683 | 1e-160 | |
| 297801734 | 511 | tRNA synthetase class I (C) family prote | 0.933 | 0.769 | 0.683 | 1e-158 |
| >gi|255585350|ref|XP_002533372.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223526794|gb|EEF29017.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/424 (75%), Positives = 364/424 (85%), Gaps = 10/424 (2%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M LQCL PT+QPRV+DH+EQIKDMITQIINN AY EGDVFFAV+K PNYG+LSGQ+L
Sbjct: 105 MDSLQCLRPTHQPRVTDHIEQIKDMITQIINNGFAYPSEGDVFFAVDKFPNYGQLSGQKL 164
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
EN+RAGER D+RKRNPADFALWKAAK GEPSW+SPWGPGRPGWHIECSAMSA YL+ K
Sbjct: 165 ENHRAGERNP-DTRKRNPADFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSAQYLTFK 223
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEI QS AACQ+SNVSYW+HNGHVTNNNEKMSKSLGN+FTIR++
Sbjct: 224 FDIHGGGSDLIFPHHENEITQSAAACQESNVSYWIHNGHVTNNNEKMSKSLGNYFTIREV 283
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ------ 234
TERYHPLA+RHFLISAHYRSPLNY+V QL+SASDA+FYIYQTLQDCE ALS FQ
Sbjct: 284 TERYHPLAVRHFLISAHYRSPLNYTVFQLESASDAIFYIYQTLQDCEDALSMFQDGSLKE 343
Query: 235 ---EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291
++ K I A+ CINKLRDEF +MSDDL+TSHILTGAFQDALKFINSS++MLKK
Sbjct: 344 GAAQNSKVVGITADAKKCINKLRDEFETKMSDDLSTSHILTGAFQDALKFINSSISMLKK 403
Query: 292 KQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ 351
K K QQLSLI+SL +IE E+K VL ILGLLPPG Y+E+LQQLKDKALKRA +TE+DVL+
Sbjct: 404 KLQKPQQLSLIQSLTEIEREIKLVLNILGLLPPGTYAEILQQLKDKALKRAGVTEDDVLR 463
Query: 352 LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQEAPPAEKEKK 411
IEERA ARKNK+FS+SDQ+RA+L KGIALMD+GKET+WRPCV VEQEQEA K++
Sbjct: 464 SIEERAQARKNKEFSRSDQVRANLAAKGIALMDVGKETVWRPCVPVEQEQEAVSVVKDQN 523
Query: 412 PAAT 415
P T
Sbjct: 524 PPPT 527
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475690|ref|XP_003631732.1| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi|296087508|emb|CBI34097.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/407 (78%), Positives = 361/407 (88%), Gaps = 1/407 (0%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M DLQCL PT QPRVSDHM+QIKDMITQIINNDCAY+++GDV+FAV+KSPNYGRLSG++L
Sbjct: 105 MTDLQCLTPTQQPRVSDHMDQIKDMITQIINNDCAYIIDGDVYFAVDKSPNYGRLSGRKL 164
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+NRAGERVAVDSRKRNPADFALWKAAK EPSWDSPWGPGRPGWHIECSAMSAHYL+ K
Sbjct: 165 EDNRAGERVAVDSRKRNPADFALWKAAKPDEPSWDSPWGPGRPGWHIECSAMSAHYLTFK 224
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGGIDLIFPHHENEIAQSCAACQ+SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI
Sbjct: 225 FDIHGGGIDLIFPHHENEIAQSCAACQESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 284
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-HGKT 239
T+ YHPLALR+FL+ HYRSP+NYS+ QL+ AS+AVFYIYQTL+DCE LSPFQE +G+
Sbjct: 285 TDLYHPLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIYQTLRDCEDTLSPFQEVNGQN 344
Query: 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
I PAA+DCI+KL+ +F +MSDDL+T HIL + Q+AL+FINS LNMLKKKQ KQQQL
Sbjct: 345 VCITPAAKDCISKLQTDFQTKMSDDLSTPHILNASLQEALRFINSGLNMLKKKQQKQQQL 404
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
S ++SL ++E EVK VL +LGLL AYSEVLQQLK KAL+RA + E+DVL LIEERA A
Sbjct: 405 SAVQSLTELEKEVKGVLSVLGLLSTLAYSEVLQQLKGKALRRAGMIEDDVLHLIEERALA 464
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQEAPPA 406
RKNK+FS+ DQIRADL KGIALMD+GKETIWRPCV VEQE +AP A
Sbjct: 465 RKNKNFSRGDQIRADLASKGIALMDVGKETIWRPCVPVEQEPQAPAA 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496172|ref|XP_002262997.2| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi|297735988|emb|CBI23962.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/407 (78%), Positives = 357/407 (87%), Gaps = 1/407 (0%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M DL CL PT+QPRVSDHM+QIKDMITQIINNDCAY ++GDV+FAV+KSPNYGRLSG++L
Sbjct: 105 MTDLHCLSPTHQPRVSDHMDQIKDMITQIINNDCAYTIDGDVYFAVDKSPNYGRLSGRKL 164
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
ENNRAGERVAVDSRKRNPADFALWKAAK GEPSWDSPWGPGRPGWHIECSAMSAHYL+ K
Sbjct: 165 ENNRAGERVAVDSRKRNPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSAHYLTFK 224
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGGIDLIFPHHENEIAQSCAACQ+SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI
Sbjct: 225 FDIHGGGIDLIFPHHENEIAQSCAACQESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 284
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-HGKT 239
T+ YHPLALR+FL+ HYRSP+NYS+ QL+ AS+AVFYIYQTL+DCE LS FQE +G+
Sbjct: 285 TDLYHPLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIYQTLRDCEDTLSLFQEVNGRN 344
Query: 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
I PAA+DCI L+ +F +MSDDL+T HIL + Q+AL+FINS LNMLKKKQ KQQQL
Sbjct: 345 VCIAPAAQDCIRTLQTDFQTKMSDDLSTPHILNASLQEALRFINSCLNMLKKKQQKQQQL 404
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
S +ESL K+ EVK VL +LGLL AYSEVLQQLK KALKRA + E+DVL LIEERA A
Sbjct: 405 SAVESLTKLGKEVKGVLSVLGLLSTLAYSEVLQQLKGKALKRAGMIEDDVLHLIEERALA 464
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQEAPPA 406
RKNKDFSK DQIRADL KGIALMD+GKETIWRPCV V+QE +AP +
Sbjct: 465 RKNKDFSKGDQIRADLASKGIALMDVGKETIWRPCVPVQQEPQAPAS 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111652|ref|XP_002315932.1| predicted protein [Populus trichocarpa] gi|222864972|gb|EEF02103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/421 (76%), Positives = 360/421 (85%), Gaps = 9/421 (2%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M DLQCL PT+QPRV+DH+EQIKDMITQII DCAY VEGDVFFAV KSPNYG+LSGQRL
Sbjct: 105 MTDLQCLIPTHQPRVTDHVEQIKDMITQIIEKDCAYAVEGDVFFAVNKSPNYGQLSGQRL 164
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
ENNRAGERVAVDSRKRNPADFALWKAAK GEPSW+SPWGPGRPGWHIECSAMSA YL+ K
Sbjct: 165 ENNRAGERVAVDSRKRNPADFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSAQYLTFK 224
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGGIDLIFPHHENEIAQSCAAC++S+VSYWMHNGHVTNNNEKMSKSLGNFFTIRQI
Sbjct: 225 FDIHGGGIDLIFPHHENEIAQSCAACEESSVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 284
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE----- 235
TERYHPLALRHFLISAHYRSPLNYSV QL+S+SDAVFYIYQTLQDCE AL PFQE
Sbjct: 285 TERYHPLALRHFLISAHYRSPLNYSVSQLESSSDAVFYIYQTLQDCEDALLPFQEGSLKE 344
Query: 236 ----HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291
+ I A+ CI++L ++F +MSDDLNTS +LTGAFQ+ALK +N SL MLKK
Sbjct: 345 GAGQNANLVAITADAQKCISRLHEDFETKMSDDLNTSPLLTGAFQEALKVVNGSLGMLKK 404
Query: 292 KQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ 351
KQ K+QQLSLI S+ +++ EV EVLRILGL PP +EVLQQLK KALKRA LTE+DV+
Sbjct: 405 KQQKKQQLSLIRSVTEVKKEVTEVLRILGLFPPCTCAEVLQQLKGKALKRAGLTEDDVMS 464
Query: 352 LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQEAPPAEKEKK 411
LIE+RA ARK++DF KSDQIR DL+ +GIALMD+GKET+WRPCV VE E++A +E
Sbjct: 465 LIEDRAVARKSQDFKKSDQIRTDLSARGIALMDVGKETVWRPCVPVENEEKAKTVVEEPT 524
Query: 412 P 412
P
Sbjct: 525 P 525
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464950|ref|XP_004150192.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] gi|449508099|ref|XP_004163218.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/429 (74%), Positives = 361/429 (84%), Gaps = 13/429 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MADLQCL PT+QPRVSDH+EQIKDMITQII N Y V+GDVFF+V+K PNYG+LSGQ+L
Sbjct: 104 MADLQCLSPTHQPRVSDHLEQIKDMITQIIKNGYGYAVDGDVFFSVDKFPNYGQLSGQKL 163
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
EN+RAGERVAVDSRK NPADFALWKAAK GEPSW+SPWGPGRPGWHIECSAMSAHYL+ K
Sbjct: 164 ENHRAGERVAVDSRKNNPADFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSAHYLTFK 223
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGGIDLIFPHHENE+AQSCAACQ+S +SYWMHNGHVTNNNEKMSKSLGNFFTIRQI
Sbjct: 224 FDIHGGGIDLIFPHHENEVAQSCAACQESKISYWMHNGHVTNNNEKMSKSLGNFFTIRQI 283
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH---- 236
TERYHPL LRHFLISAHYRSPLNY+V QLDSASD V+YIYQT+QDCE ALS Q
Sbjct: 284 TERYHPLVLRHFLISAHYRSPLNYTVSQLDSASDTVYYIYQTMQDCEDALSQHQGENLSD 343
Query: 237 --GKTARINP---AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291
GKT + +P AAE+CI LR EF RM+DDLNT+HILTGAFQ+ALKFINS+L LKK
Sbjct: 344 GLGKTGKKDPVSSAAEECIINLRSEFQTRMADDLNTAHILTGAFQEALKFINSTLTSLKK 403
Query: 292 KQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ 351
KQPK+QQLS+I+SL ++ E++EVL +LGLL YSEVLQQLKDKALKRA + E+D+L
Sbjct: 404 KQPKKQQLSMIQSLVNVKKELREVLDVLGLLSTSTYSEVLQQLKDKALKRAGMVEDDILH 463
Query: 352 LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQEAPPAEKEKK 411
LIEER ARK+K+F KSD IRA L+ GIALMD+G+ETIWRPCV VE PP E++
Sbjct: 464 LIEERTQARKDKNFGKSDNIRAKLSSLGIALMDVGRETIWRPCVPVEPAVLVPPGEQK-- 521
Query: 412 PAATGEEQK 420
AT EQK
Sbjct: 522 --ATQAEQK 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575566|ref|XP_003555910.1| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/431 (69%), Positives = 356/431 (82%), Gaps = 13/431 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MADLQC P+ +PRVS+H+ +IKDMITQII+N AY V+GDVF+AV+K PNYG LSGQRL
Sbjct: 106 MADLQCKTPSKEPRVSEHLNEIKDMITQIISNGYAYEVDGDVFYAVDKCPNYGMLSGQRL 165
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+NRAGERVAVDSRKR+PADFALWKAAK GEPSWDSPWGPGRPGWHIECSAMSA YL+ K
Sbjct: 166 EHNRAGERVAVDSRKRHPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLTHK 225
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGGIDLIFPHHENEIAQS AA +S+VSYWMHNGHVTNNNEKMSKSLGNFFTIRQI
Sbjct: 226 FDIHGGGIDLIFPHHENEIAQSWAADHESHVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 285
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF-----QE 235
TERYHPLALRHFLISAHYRSPLNYS+ QL+++SDA++YI+QTLQDC+ A+SP ++
Sbjct: 286 TERYHPLALRHFLISAHYRSPLNYSISQLENSSDAIYYIFQTLQDCKDAVSPLLQGETEK 345
Query: 236 HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 295
+ K +IN AA++CI KL EF +MSDDL T ILTGA Q+ALKF+N+SL MLKKK K
Sbjct: 346 NEKVPQINEAAKECIKKLNVEFQTKMSDDLQTPVILTGALQEALKFVNTSLKMLKKKMQK 405
Query: 296 QQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 355
+ QL LI+SL ++E EV +VL +LGLL +Y+EVL QLKDKAL RA LTE++VL LIEE
Sbjct: 406 RAQLQLIQSLLEVEKEVGKVLDVLGLLSSKSYAEVLHQLKDKALNRAGLTEDEVLHLIEE 465
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCV--------LVEQEQEAPPAE 407
R AR NKDF+KSD++RADL KGIALMD+G E IWRPC+ +V ++Q AP E
Sbjct: 466 RTQARINKDFAKSDKMRADLATKGIALMDVGNEIIWRPCIPSEPLVAEVVHRDQRAPTVE 525
Query: 408 KEKKPAATGEE 418
+++ ++ ++
Sbjct: 526 EKQSSSSVNQK 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444709|ref|XP_003592632.1| Cysteinyl-tRNA synthetase [Medicago truncatula] gi|355481680|gb|AES62883.1| Cysteinyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/400 (73%), Positives = 340/400 (85%), Gaps = 5/400 (1%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M+DL C PT +PRVSDH++QIKDMITQIINND AY V GDVF++VEK PNYG LSGQRL
Sbjct: 114 MSDLLCERPTKEPRVSDHIDQIKDMITQIINNDYAYEVNGDVFYSVEKCPNYGALSGQRL 173
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+NRAGERVAVDSRK +PADFALWKAAK GEPSWDSPWGPGRPGWHIECSAMSA YLS K
Sbjct: 174 EHNRAGERVAVDSRKHHPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLSHK 233
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGGIDLIFPHHENEIAQS AA ++S++SYW+HNGHVTNNNEKMSKSLGNFFTIRQI
Sbjct: 234 FDIHGGGIDLIFPHHENEIAQSWAADKESHISYWLHNGHVTNNNEKMSKSLGNFFTIRQI 293
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF-----QE 235
TERYHPLALRHFLISAHYRSPLNYS+ QL+++SDA++YI+QTL+DC LS F ++
Sbjct: 294 TERYHPLALRHFLISAHYRSPLNYSITQLETSSDAIYYIFQTLEDCRDTLSSFLQEDTEK 353
Query: 236 HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 295
K IN AA++CI KL+DEF +MSDDL T ILTGA Q+ALKF+N SL MLKKK K
Sbjct: 354 KEKVPPINDAAKECIKKLKDEFQTKMSDDLQTPVILTGALQEALKFMNGSLKMLKKKMQK 413
Query: 296 QQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 355
+ QL L++SL ++E E +E+L++LGLL +Y+EVLQQLKDKALKRA LTE +VL+ IEE
Sbjct: 414 RAQLQLVQSLLEVEKEAREILKVLGLLSSLSYAEVLQQLKDKALKRAGLTEVEVLKSIEE 473
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCV 395
R AR NKDF+KSD +R DLT KGIALMD+G ETIWRPC+
Sbjct: 474 RRQARINKDFAKSDNVRTDLTAKGIALMDVGNETIWRPCI 513
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536300|ref|XP_003536677.1| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/426 (69%), Positives = 349/426 (81%), Gaps = 18/426 (4%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MADLQC P+ +PRVS+H+ +IKDMITQIINN AY V+GDVF+AV+K PNYG LSGQRL
Sbjct: 106 MADLQCETPSREPRVSEHLNEIKDMITQIINNGYAYEVDGDVFYAVDKCPNYGMLSGQRL 165
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+NRAGERVAVDSRKR+PADFALWKAAK GEPSWDSPWGPGRPGWHIECSAMSA YL+ K
Sbjct: 166 EHNRAGERVAVDSRKRHPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLTHK 225
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGGIDLIFPHHENEIAQS AA DS+VSYWMHNGHVTNNNEKMSKSLGNFFTIRQI
Sbjct: 226 FDIHGGGIDLIFPHHENEIAQSWAADHDSHVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 285
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF-----QE 235
TERYH LALRHFLISAHYRSPLNYS+ QL+++SDA++YI+QTLQDC+ A+SP ++
Sbjct: 286 TERYHSLALRHFLISAHYRSPLNYSISQLENSSDAIYYIFQTLQDCKDAVSPLLQGETEK 345
Query: 236 HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 295
+ K +IN AA++CI KL EF +MSDDL T ILTGA Q+ALKF+N+SL MLKKK K
Sbjct: 346 NEKVPQINEAAKECIKKLNVEFQTKMSDDLQTPVILTGALQEALKFVNTSLKMLKKKMQK 405
Query: 296 QQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 355
+ QL LI+SL ++E V +VL +LGLL +Y+EVLQQLKDKALKRA LTE++VL LI+E
Sbjct: 406 RAQLQLIQSLLEVEKVVGKVLDVLGLLSSKSYAEVLQQLKDKALKRAGLTEDEVLHLIDE 465
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCV-------------LVEQEQE 402
R AR NKDF+KSD++RADL KGIALMD+G E WRPC+ +VE++Q
Sbjct: 466 RTQARINKDFAKSDKMRADLATKGIALMDVGNEITWRPCIPSEPLVAEVVQRPIVEEKQS 525
Query: 403 APPAEK 408
P +K
Sbjct: 526 TPVNQK 531
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241557|ref|NP_198699.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi|192807340|gb|ACF06122.1| At5g38830 [Arabidopsis thaliana] gi|332006981|gb|AED94364.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/398 (68%), Positives = 328/398 (82%), Gaps = 5/398 (1%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M LQCLPPT+QPRVS+HM+ I MI +II DC YVVEGDVFF+V+KSPNYG+LSGQ L
Sbjct: 106 MGALQCLPPTHQPRVSEHMDNIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLL 165
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ RAGERVAVDSRKRNPADFALWKAAK EPSW+SPWGPGRPGWHIECSAMS HYLS K
Sbjct: 166 EHTRAGERVAVDSRKRNPADFALWKAAKPDEPSWESPWGPGRPGWHIECSAMSVHYLSPK 225
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQ+CAAC+DS V+YW+HNGHVT NNEKM+KS NF TIR+I
Sbjct: 226 FDIHGGGADLKFPHHENEIAQTCAACEDSGVNYWLHNGHVTINNEKMAKSKHNFKTIREI 285
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ----EH 236
T YHPLALRHFL+SA YRSPL+++ QL+S+S+A++Y+YQTLQD + LSP+Q E
Sbjct: 286 TASYHPLALRHFLMSAQYRSPLSFTASQLESSSEALYYVYQTLQDLDEGLSPYQDALSED 345
Query: 237 GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 296
G + +D I KL+ EF ++M DDLNT+HILTGA+QDALKFIN+SL+ LKK Q K+
Sbjct: 346 GGKSEQTAEGKDIIKKLKTEFESKMLDDLNTAHILTGAYQDALKFINASLSKLKKMQ-KK 404
Query: 297 QQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEER 356
Q++S++ SL +IE +EVL +LGLL +Y+E+L+++K K L RAE+ EE + QLIEER
Sbjct: 405 QRMSMLVSLVEIEKAAREVLDVLGLLTTLSYAEILKEMKLKTLIRAEIGEEGISQLIEER 464
Query: 357 AAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPC 394
ARKNKDF+KSD+IR LTRKGIALMD+GKET+WRPC
Sbjct: 465 ITARKNKDFAKSDEIREKLTRKGIALMDIGKETVWRPC 502
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801734|ref|XP_002868751.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] gi|297314587|gb|EFH45010.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/398 (68%), Positives = 327/398 (82%), Gaps = 5/398 (1%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M LQCL PT+QPRVS+HM+ I MI +II DC YVVEGDVFF+V+KSPNYG+LSGQ L
Sbjct: 106 MGALQCLLPTHQPRVSEHMDHIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLL 165
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ RAGERVAVDSRKRNPADFALWKAAK EPSW+SPWGPGRPGWHIECSAMSAHYLS K
Sbjct: 166 EHTRAGERVAVDSRKRNPADFALWKAAKPEEPSWESPWGPGRPGWHIECSAMSAHYLSPK 225
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQ+CAAC+DS V+YW+HNGHVT NNEKM+KS NF TIR+I
Sbjct: 226 FDIHGGGADLKFPHHENEIAQTCAACEDSGVNYWLHNGHVTINNEKMAKSKKNFKTIREI 285
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ----EH 236
T YHPLALRHFL+SA YRSPL++S QL+S+SDA++Y+YQTLQD + LSP++ E
Sbjct: 286 TASYHPLALRHFLMSAQYRSPLSFSASQLESSSDALYYVYQTLQDLDEDLSPYREALSED 345
Query: 237 GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 296
G A P +D I KL+ EF ++M DDLNT+HILTGA+QDALKFIN++ + LKK Q K+
Sbjct: 346 GGKAEQTPEGKDIIKKLKSEFESKMLDDLNTAHILTGAYQDALKFINANRSKLKKMQ-KK 404
Query: 297 QQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEER 356
Q++S++ SL +IE +EVL +LGLL +Y+EVL+++K K L RAE+ EED+L+ IE+R
Sbjct: 405 QRMSMLVSLVEIEKAAREVLDVLGLLTTLSYAEVLKEMKLKTLIRAEMGEEDILREIEDR 464
Query: 357 AAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPC 394
AR NKDF+KSD+IR LTRKGIALMD GKET+WRPC
Sbjct: 465 ITARNNKDFAKSDEIREKLTRKGIALMDFGKETVWRPC 502
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| TAIR|locus:2152237 | 511 | AT5G38830 "AT5G38830" [Arabido | 0.933 | 0.769 | 0.670 | 5.1e-145 | |
| UNIPROTKB|Q0IZQ2 | 569 | Os09g0556500 "Os09g0556500 pro | 0.919 | 0.680 | 0.611 | 1.2e-127 | |
| TAIR|locus:2042521 | 563 | SYCO ARATH "cysteinyl t-RNA sy | 0.923 | 0.690 | 0.6 | 5.5e-125 | |
| TAIR|locus:2078406 | 489 | AT3G56300 "AT3G56300" [Arabido | 0.486 | 0.419 | 0.737 | 9e-111 | |
| UNIPROTKB|Q7G2N5 | 491 | LOC_Os10g32570 "tRNA synthetas | 0.370 | 0.317 | 0.673 | 4.2e-96 | |
| UNIPROTKB|A8JCV0 | 637 | CHLREDRAFT_153062 "Cysteinyl-t | 0.346 | 0.229 | 0.659 | 5.6e-94 | |
| UNIPROTKB|Q747A2 | 481 | cysS "Cysteine--tRNA ligase" [ | 0.900 | 0.787 | 0.441 | 3.8e-78 | |
| TIGR_CMR|GSU_3365 | 481 | GSU_3365 "cysteinyl-tRNA synth | 0.900 | 0.787 | 0.441 | 3.8e-78 | |
| TIGR_CMR|CHY_2338 | 465 | CHY_2338 "cysteinyl-tRNA synth | 0.641 | 0.580 | 0.501 | 9.6e-76 | |
| UNIPROTKB|O67163 | 495 | cysS "Cysteine--tRNA ligase" [ | 0.914 | 0.777 | 0.405 | 3.6e-73 |
| TAIR|locus:2152237 AT5G38830 "AT5G38830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
Identities = 267/398 (67%), Positives = 321/398 (80%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M LQCLPPT+QPRVS+HM+ I MI +II DC YVVEGDVFF+V+KSPNYG+LSGQ L
Sbjct: 106 MGALQCLPPTHQPRVSEHMDNIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLL 165
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ RAGERVAVDSRKRNPADFALWKAAK EPSW+SPWGPGRPGWHIECSAMS HYLS K
Sbjct: 166 EHTRAGERVAVDSRKRNPADFALWKAAKPDEPSWESPWGPGRPGWHIECSAMSVHYLSPK 225
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQ+CAAC+DS V+YW+HNGHVT NNEKM+KS NF TIR+I
Sbjct: 226 FDIHGGGADLKFPHHENEIAQTCAACEDSGVNYWLHNGHVTINNEKMAKSKHNFKTIREI 285
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ----EH 236
T YHPLALRHFL+SA YRSPL+++ QL+S+S+A++Y+YQTLQD + LSP+Q E
Sbjct: 286 TASYHPLALRHFLMSAQYRSPLSFTASQLESSSEALYYVYQTLQDLDEGLSPYQDALSED 345
Query: 237 GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXX 296
G + +D I KL+ EF ++M DDLNT+HILTGA+QDALKFIN+SL+ L
Sbjct: 346 GGKSEQTAEGKDIIKKLKTEFESKMLDDLNTAHILTGAYQDALKFINASLSKLKKMQKKQ 405
Query: 297 XXLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEER 356
+S++ SL +IE +EVL +LGLL +Y+E+L+++K K L RAE+ EE + QLIEER
Sbjct: 406 R-MSMLVSLVEIEKAAREVLDVLGLLTTLSYAEILKEMKLKTLIRAEIGEEGISQLIEER 464
Query: 357 AAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPC 394
ARKNKDF+KSD+IR LTRKGIALMD+GKET+WRPC
Sbjct: 465 ITARKNKDFAKSDEIREKLTRKGIALMDIGKETVWRPC 502
|
|
| UNIPROTKB|Q0IZQ2 Os09g0556500 "Os09g0556500 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
Identities = 242/396 (61%), Positives = 295/396 (74%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA+L CLPP+ +PRVSDH++QI +MI QII+NDCAY + GDV+F+VE P YG LSG++L
Sbjct: 171 MANLHCLPPSVEPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVENFPEYGDLSGRKL 230
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
++NRAGERVAVD RK+NPADFALWKAAK GEPSWDSPWGPGRPGWHIECSAMSAHYL
Sbjct: 231 DDNRAGERVAVDERKKNPADFALWKAAKDGEPSWDSPWGPGRPGWHIECSAMSAHYLGHS 290
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS AAC DS+++YW+HNG V N++KMSKSLGNF TIR++
Sbjct: 291 FDIHGGGEDLIFPHHENEIAQSRAACCDSSINYWIHNGFVNVNSQKMSKSLGNFVTIRKV 350
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-GKT 239
TE YHPLALR FL+ HYRSP+NY++ QL+ ASD ++Y YQTLQDCE + Q G
Sbjct: 351 TELYHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLQDCEESCQQHQSKAGDP 410
Query: 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXL 299
+N +CI KL DEF MSDDL+TS + A + LK +N L+
Sbjct: 411 LPVNTT--NCIQKLHDEFETSMSDDLHTS-VALAAISEPLKVMNDLLHTRKGKKQEKR-- 465
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
+ESL +E +++ VL +LGLLP +Y E LQQL++KAL+RA +TEE VLQ IEER +A
Sbjct: 466 --LESLSAMEEKIRMVLSVLGLLP-SSYYEALQQLREKALRRASMTEEQVLQKIEERTSA 522
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCV 395
RK K + KSD+IR +L GIALMD T WRP V
Sbjct: 523 RKAKQYEKSDEIRKELAAVGIALMDGPDGTTWRPSV 558
|
|
| TAIR|locus:2042521 SYCO ARATH "cysteinyl t-RNA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
Identities = 237/395 (60%), Positives = 291/395 (73%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M LQCL P+ QPRVSDH+ QI D+I QI++N AY V+GD++F+V+K P YG+LSG++L
Sbjct: 163 MEQLQCLDPSVQPRVSDHIPQIIDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKL 222
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+NRAGERVAVD+RK++PADFALWKAAK GEP W+SPWG GRPGWHIECSAMSA YL
Sbjct: 223 EDNRAGERVAVDTRKKHPADFALWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYS 282
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG+DL+FPHHENEIAQSCAAC SN+SYW+HNG VT ++EKMSKSLGNFFTIRQ+
Sbjct: 283 FDIHGGGMDLVFPHHENEIAQSCAACDSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQV 342
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+ YHPLALR FL+ HYRSP+NYS L+SAS+ +FYIYQTL DCE AL +
Sbjct: 343 IDLYHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGEKDSTFENG 402
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLS 300
+ IN R EF A MSDDL T + A + LK IN ++
Sbjct: 403 SVPSDTLTSINTFRTEFVASMSDDLLTP-VTLAAMSEPLKTINDLIHTRKGKKQARRE-- 459
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
ESL+ +E +++VL ILGL+P +YSEVL+QLK+KALKRA L EEDVLQ ++ER AR
Sbjct: 460 --ESLKALETTIRDVLTILGLMPT-SYSEVLEQLKEKALKRAGLKEEDVLQRVQERTDAR 516
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCV 395
KNK++ +SD IR DL + GIALMD + T WRP +
Sbjct: 517 KNKEYERSDAIRKDLAKVGIALMDSPEGTTWRPAI 551
|
|
| TAIR|locus:2078406 AT3G56300 "AT3G56300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 160/217 (73%), Positives = 181/217 (83%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA LQCL PT+QPRVSDHMEQI MI +II N C Y V GDVFF+V+KSP+YG+LSGQRL
Sbjct: 105 MAALQCLLPTHQPRVSDHMEQIIKMIEKIIENGCGYAVGGDVFFSVDKSPSYGQLSGQRL 164
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
++ +AG+RVAVDSRKRNPADFAL KAAK+GEPSW+SPWG GRPGWHIE
Sbjct: 165 DHTQAGKRVAVDSRKRNPADFALRKAAKSGEPSWESPWGHGRPGWHIE------------ 212
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQ+CAAC+DS V+YW+HNGHVTNNN KM KSL NFFTIRQI
Sbjct: 213 FDIHGGGADLKFPHHENEIAQTCAACEDSGVNYWLHNGHVTNNNVKMGKSLNNFFTIRQI 272
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVF 217
YHPLALRHFL+SA YRSPLNYSV QL+S+SDA++
Sbjct: 273 AANYHPLALRHFLMSAQYRSPLNYSVSQLESSSDALY 309
|
|
| UNIPROTKB|Q7G2N5 LOC_Os10g32570 "tRNA synthetase class I family protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 105/156 (67%), Positives = 130/156 (83%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M +LQCLPPT++PRV+ H+EQI D+IT+I++N AY +EGDV+F+V+ P+Y LSG+++
Sbjct: 120 MYELQCLPPTHEPRVTKHIEQIIDLITKIMDNGKAYTIEGDVYFSVDNFPDYLSLSGRKV 179
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ NR G RVAVD+RKRNPADFALWK+AK GEPSW+SPWG GRPGWHIECSAMSAHYL +
Sbjct: 180 DQNRPGTRVAVDARKRNPADFALWKSAKEGEPSWESPWGRGRPGWHIECSAMSAHYLGNI 239
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 156
FDIHGGG DLIFPHHENE+AQS AA +S + H
Sbjct: 240 FDIHGGGKDLIFPHHENELAQSQAAYPESEIISLYH 275
|
|
| UNIPROTKB|A8JCV0 CHLREDRAFT_153062 "Cysteinyl-tRNA synthetase" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 5.6e-94, Sum P(4) = 5.6e-94
Identities = 97/147 (65%), Positives = 111/147 (75%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG-DVFFAVEKSPNYGRLSGQR 59
MA L LPP +PR + + Q+ IT II N AY V+G DVFF V P YGRLSG++
Sbjct: 138 MAALNVLPPALEPRATAFVPQMISTITDIIANGHAYAVDGGDVFFDVASLPGYGRLSGRQ 197
Query: 60 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
E+NRAGERVAVDSRKR+PADFALWKAAK GEP+W SPWGPGRPGWHIECS+M +
Sbjct: 198 QEDNRAGERVAVDSRKRSPADFALWKAAKPGEPAWPSPWGPGRPGWHIECSSMIRELMGP 257
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAAC 146
DIHGGG DL+FPHHENE+AQS AAC
Sbjct: 258 VIDIHGGGRDLVFPHHENELAQSQAAC 284
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| UNIPROTKB|Q747A2 cysS "Cysteine--tRNA ligase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 173/392 (44%), Positives = 232/392 (59%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PTYQP+ ++H+ ++ +I +++ AY +GDV+F+VE Y +LS + L
Sbjct: 101 MAALGLDLPTYQPKATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E +AG R+ V +KR+P DFALWK +K GEP WDSPWG GRPGWHIECSAMS YL
Sbjct: 161 EEMQAGARIEVGEKKRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA YW+HNG V N EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E Y LR FL+SAHYRSP+++S L A+ + IY L + A++ +
Sbjct: 281 LESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAG 338
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLS 300
RI+ + L F M DD NT+ L F D ++ +N L +
Sbjct: 339 RIDEELAEKAAGLPTRFREAMDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRA 391
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
++ S R+ + V VL + PGA+ E L+ K AL E E + +LIEER AAR
Sbjct: 392 VLASAREAIDRVGAVLGLF-TSEPGAFVERLKSRKAAALP-IEAAE--IERLIEERNAAR 447
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
K +DF ++D+IR L +GI L+D + T W+
Sbjct: 448 KARDFRRADEIRDTLAAQGILLLDSAQGTTWK 479
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| TIGR_CMR|GSU_3365 GSU_3365 "cysteinyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 173/392 (44%), Positives = 232/392 (59%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PTYQP+ ++H+ ++ +I +++ AY +GDV+F+VE Y +LS + L
Sbjct: 101 MAALGLDLPTYQPKATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E +AG R+ V +KR+P DFALWK +K GEP WDSPWG GRPGWHIECSAMS YL
Sbjct: 161 EEMQAGARIEVGEKKRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA YW+HNG V N EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E Y LR FL+SAHYRSP+++S L A+ + IY L + A++ +
Sbjct: 281 LESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAG 338
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLS 300
RI+ + L F M DD NT+ L F D ++ +N L +
Sbjct: 339 RIDEELAEKAAGLPTRFREAMDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRA 391
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
++ S R+ + V VL + PGA+ E L+ K AL E E + +LIEER AAR
Sbjct: 392 VLASAREAIDRVGAVLGLF-TSEPGAFVERLKSRKAAALP-IEAAE--IERLIEERNAAR 447
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
K +DF ++D+IR L +GI L+D + T W+
Sbjct: 448 KARDFRRADEIRDTLAAQGILLLDSAQGTTWK 479
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| TIGR_CMR|CHY_2338 CHY_2338 "cysteinyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 139/277 (50%), Positives = 186/277 (67%)
Query: 10 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERV 69
T P+V++H+ +I +M+ +I AY VEG+V+FAV+ +YG+LSG+ LE +AG RV
Sbjct: 108 TVHPKVTEHIPEIIEMVKGLIEKGYAYEVEGNVYFAVDSFSDYGKLSGRDLEELKAGARV 167
Query: 70 AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 129
VD +K+NP DFALWK AK GEP W+SPWGPGRPGWHIECSAMS YL FDIHGGG D
Sbjct: 168 EVDEKKKNPLDFALWKKAKPGEPYWESPWGPGRPGWHIECSAMSLKYLGENFDIHGGGAD 227
Query: 130 LIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189
L+FPHHENE+AQS A YWMHNG +T N EKMSKSLGNFF +R+I E++ +
Sbjct: 228 LVFPHHENEVAQSEAFTGKPFARYWMHNGFITVNQEKMSKSLGNFFLVREILEKFPGRVV 287
Query: 190 RHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC 249
R FL+S HYRSPL++ +L+ A A+ + +Q+ + ++P G+ ARI E
Sbjct: 288 RFFLLSTHYRSPLDFDDKKLNEAKAALERVDNFVQNLK-EVNPLP--GE-ARIE-IQEKI 342
Query: 250 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 286
N LRD F+ M DD NT+ + F+ ++F N+ +
Sbjct: 343 TNFLRD-FNEAMEDDFNTAQAMASLFE-LVRFGNTQI 377
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| UNIPROTKB|O67163 cysS "Cysteine--tRNA ligase" [Aquifex aeolicus VF5 (taxid:224324)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/397 (40%), Positives = 234/397 (58%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M +++ P +PRV++H+ +I ++I +++ AYVVEGDV+F+V+K +YG+LS + +
Sbjct: 101 MENIRVRPADVEPRVTEHIPEIIEVIQKLVEKGYAYVVEGDVYFSVKKFKDYGKLSKRDI 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E AG RV +KR+P DFALWKA+KAGEP+WDSPWG GRPGWH EC AM +L
Sbjct: 161 EELIAGARVEPSEKKRDPLDFALWKASKAGEPAWDSPWGKGRPGWHTECVAMVFKHLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
DIHGGG+DL+FPHHENEIAQ+ A YWMHNG VT +KMSKSLGN+ T+R++
Sbjct: 221 IDIHGGGLDLVFPHHENEIAQAEAITGKPFARYWMHNGLVTVGGQKMSKSLGNYVTLREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-HGKT 239
+YHP LR ++ HYRSPL++S +++ A + ++D E+ L Q K
Sbjct: 281 YTKYHPDVLRLLVLFTHYRSPLDFSWEKMEETLKAYERLKNAIEDLEL-LKKLQVVESKE 339
Query: 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXX- 298
+P E + + + F+A +SDD NT L+ ++ + +N N
Sbjct: 340 GGTHPLYEQ-VKEFEENFYASLSDDFNTPEALSHVYK-LVGELNKVKNKAYSEGKITDRE 397
Query: 299 LSLIESLRK-IENEVKEVLRILGLLPPGAYSEV-LQQLKDKALKRAELTEEDVLQ-LIEE 355
LS E K + N +K +I GLL Y E ++++ ++ L+ ++ +E ++Q LIE
Sbjct: 398 LSAYEFASKSLLNTMK---KIFGLLED-LYPECKVERVVERELEAGQVFDEKLIQILIEA 453
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R ARK K F +D IR L GI L D T W+
Sbjct: 454 RNIARKEKVFKVADYIRDKLKELGIVLEDTPAGTKWK 490
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.16 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00013689001 | SubName- Full=Chromosome undetermined scaffold_528, whole genome shotgun sequence; (513 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00036298001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa) | • | • | 0.882 | ||||||
 | GSVIVG00022843001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa) | • | • | • | 0.853 | |||||
 | GSVIVG00006883001 | SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa) | • | 0.780 | |||||||
 | GSVIVG00002540001 | RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa) | • | • | 0.730 | ||||||
 | GSVIVG00028238001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (516 aa) | • | • | 0.713 | ||||||
 | GSVIVG00037704001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (529 aa) | • | • | 0.707 | ||||||
 | GSVIVG00016648001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (505 aa) | • | • | 0.706 | ||||||
 | GSVIVG00035363001 | SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa) | • | • | 0.703 | ||||||
 | GSVIVG00002216001 | SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (485 aa) | • | 0.668 | |||||||
 | GSVIVG00000425001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (370 aa) | • | • | 0.636 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 421 | |||
| PLN02946 | 557 | PLN02946, PLN02946, cysteine-tRNA ligase | 0.0 | |
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validat | 1e-178 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 1e-155 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 1e-129 | |
| pfam01406 | 301 | pfam01406, tRNA-synt_1e, tRNA synthetases class I | 1e-109 | |
| PRK14535 | 699 | PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi | 1e-88 | |
| PTZ00399 | 651 | PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro | 3e-84 | |
| PRK14536 | 490 | PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi | 2e-81 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 5e-61 | |
| TIGR03447 | 411 | TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi | 3e-57 | |
| PRK12418 | 384 | PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro | 8e-55 | |
| PRK14534 | 481 | PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi | 3e-49 | |
| cd07963 | 156 | cd07963, Anticodon_Ia_Cys, Anticodon-binding domai | 3e-21 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 3e-07 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 7e-07 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 1e-06 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 4e-06 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 5e-06 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 2e-05 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 2e-05 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 3e-04 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-04 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 7e-04 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 0.001 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 0.001 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.002 | |
| PRK00750 | 510 | PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | 0.003 |
| >gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase | Back alignment and domain information |
|---|
Score = 603 bits (1556), Expect = 0.0
Identities = 258/405 (63%), Positives = 311/405 (76%), Gaps = 9/405 (2%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L CLPP+ +PRVSDH+ QI DMI QI++N CAY V+GDV+F+V+K P YG+LSG++L
Sbjct: 158 MAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKL 217
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+NRAGERVAVDSRK+NPADFALWKAAK GEP WDSPWGPGRPGWHIECSAMSA YL
Sbjct: 218 EDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHS 277
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG+DL+FPHHENEIAQSCAAC DSN+SYW+HNG VT ++EKMSKSLGNFFTIRQ+
Sbjct: 278 FDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQV 337
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+ YHPLALR FL+ HYRSP+NYS +QL+SAS+ +FYIYQTL DCE +L +
Sbjct: 338 IDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKD 397
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK-KKQPKQQQL 299
+ P +CINK DEF MSDDL+T + A + LK IN L+ K KKQ K+
Sbjct: 398 SVPPDTLNCINKFHDEFVTSMSDDLHTP-VALAALSEPLKTINDLLHTRKGKKQEKR--- 453
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
+ESL +E ++++VL +LGL+P +YSE LQQL++KAL+RA+LTEE VLQ IEER A
Sbjct: 454 --LESLAALEKKIRDVLSVLGLMPT-SYSEALQQLREKALRRAKLTEEQVLQKIEERTVA 510
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCV-LVEQEQEA 403
RKNK++ KSD IR DL GIALMD T WRP + L QEQ A
Sbjct: 511 RKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPLALQEQVA 555
|
Length = 557 |
| >gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 505 bits (1304), Expect = e-178
Identities = 174/393 (44%), Positives = 225/393 (57%), Gaps = 33/393 (8%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L LPP +PR ++H+ +I ++I ++I+ AY +GDV+F V K P+YG+LSG+ L
Sbjct: 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ +AG RV V KR+P DFALWKAAK GEPSW+SPWG GRPGWHIECSAMS YL
Sbjct: 161 DELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS AA +YWMHNG VT N EKMSKSLGNFFTIR +
Sbjct: 221 FDIHGGGADLIFPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDL 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
++Y P LR FL+SAHYRSPLN+S L+ A A+ +Y L + +
Sbjct: 281 LKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETALGEDD-------- 332
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
A + + ++ F M DD NT L + + IN +L K
Sbjct: 333 ---EALLAELEEFKERFIEAMDDDFNTPEALA-VLFELAREINRALETKDK--------- 379
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
E+ + ++ + +LGL + EL + ++ LIEER AR
Sbjct: 380 --EAAAALAALLRALADVLGLEQ--------DEEALFEAAADELLDAEIEALIEERQEAR 429
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKE-TIWR 392
K KDF+ +D IR +L GI L D + T WR
Sbjct: 430 KAKDFALADAIRDELAALGIVLED-TPDGTTWR 461
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Length = 463 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 446 bits (1149), Expect = e-155
Identities = 174/395 (44%), Positives = 221/395 (55%), Gaps = 35/395 (8%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSG-Q 58
M L LPP +PR ++H+++I + I ++I AYV + GDV+F V K +YG+LSG
Sbjct: 100 MDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRD 159
Query: 59 RLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
LE +AG RV VD KRNP DF LWKAAK GEPSWDSPWG GRPGWHIECSAMS YL
Sbjct: 160 SLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLG 219
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSLGNFFTI 177
FDIHGGG DLIFPHHENEIAQS AA YWMHNG + + EKMSKSLGNF T+
Sbjct: 220 ETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITV 279
Query: 178 RQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG 237
R + ++Y P LR FL+S+HYRSPL++S L+ A A+ +Y L+
Sbjct: 280 RDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLA------- 332
Query: 238 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ 297
A + + F + DD NT L + K IN L + K +
Sbjct: 333 -----GDAELADLKEFEARFREALDDDFNTPKALA-VLFELAKEINRLLE--EGKSDAKA 384
Query: 298 QLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERA 357
LS + K +L ILGL G + + Q E +E++ LIEER
Sbjct: 385 VLSAL----------KALLAILGLKVLGLFPQSGAQE-------DESDDEEIEALIEERL 427
Query: 358 AARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
ARK K+++ +D+IR +L GI L D T WR
Sbjct: 428 EARKAKNWALADEIRDELLALGIILEDTPDGTTWR 462
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Length = 464 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 379 bits (975), Expect = e-129
Identities = 177/393 (45%), Positives = 232/393 (59%), Gaps = 29/393 (7%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQR 59
M L LPP +PR ++H+++I + I Q+I AYV + GDV+F V K +YG+LS Q
Sbjct: 99 MKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQD 158
Query: 60 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
L+ AG RV VD KRN DF LWK++K GEP WDSPWG GRPGWHIECSAM+ YL
Sbjct: 159 LDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGD 218
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179
+ DIHGGG+DLIFPHHENEIAQS AA YWMHNG + +NEKMSKSLGNFFT+R
Sbjct: 219 QIDIHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRD 278
Query: 180 ITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239
+ + Y P LR+FL+S HYRSPL++S L++A +A+ +Y+ L+ + +L+
Sbjct: 279 VLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYKALRVLDTSLAYSGNQSLN 338
Query: 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
+ + F M DDLNT++ L F + K IN + K
Sbjct: 339 KFPDE------KEFEARFVEAMDDDLNTANALAVLF-ELAKSINLTF------VSKADAA 385
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
LIE L +E L +L LP S+ +Q + L E LIEER+ A
Sbjct: 386 LLIEHLIFLE----SRLGLLLGLP----SKPVQAGSNDDLGEIE-------ALIEERSIA 430
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
RK KDF+K+D+IR +L +KGI L D + T WR
Sbjct: 431 RKEKDFAKADEIRDELAKKGIVLEDTPQGTTWR 463
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-109
Identities = 124/206 (60%), Positives = 150/206 (72%), Gaps = 1/206 (0%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQR 59
M L LPP +PRV++H+++I + I ++I AYV + GDV+F V P+YG+LSGQ
Sbjct: 87 MDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFPDYGKLSGQN 146
Query: 60 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
LE AG R V KR+P DFALWKA+K GEPSWDSPWG GRPGWHIECSAM+ YL S
Sbjct: 147 LEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSWDSPWGKGRPGWHIECSAMARKYLGS 206
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179
+ DIHGGG+DL FPHHENEIAQS AA YW+HNGH+ EKMSKSLGNF TIR
Sbjct: 207 QIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRD 266
Query: 180 ITERYHPLALRHFLISAHYRSPLNYS 205
+ +RY P LR+FL+S HYRSPL++S
Sbjct: 267 VLKRYDPRILRYFLLSVHYRSPLDFS 292
|
This family includes only cysteinyl tRNA synthetases. Length = 301 |
| >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 1e-88
Identities = 165/406 (40%), Positives = 220/406 (54%), Gaps = 54/406 (13%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLEN 62
L L P +P+ ++++ Q+ MI +I N AY GDV++AV + YG+LSG+ L++
Sbjct: 329 LGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDD 388
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
RAGERV VD KR+P DF LWKAAKAGEP+W+SPWG GRPGWHIECSAMS + FD
Sbjct: 389 LRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFD 448
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQD----------------SNVSYWMHNGHVTNNNEK 166
IHGGG DL FPHHENEIAQS A S+V YW+HNG + + EK
Sbjct: 449 IHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEK 508
Query: 167 MSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDC 226
MSKSLGNFFTIR++ ++Y P +R F++ AHYRSPLNYS LD A A+ +Y TL++
Sbjct: 509 MSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNT 568
Query: 227 EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 286
A + +N F+A M+DD T + F+ A +
Sbjct: 569 PAA-------------EFMLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA-----GEV 610
Query: 287 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTE 346
N Q + +K + I+GLL +E LQ L+
Sbjct: 611 NKTNDAQ--------------LAGCLKALGGIIGLLQRDP-TEFLQ----GGAASDGLSN 651
Query: 347 EDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
E++ LI R AR +K++++SD+IR L I L D T WR
Sbjct: 652 EEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDNAGGTTWR 697
|
Length = 699 |
| >gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 3e-84
Identities = 149/463 (32%), Positives = 214/463 (46%), Gaps = 65/463 (14%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRL- 55
M L PP RVS+++ +I D I +II+N AY G V+F VE Y +L
Sbjct: 140 MKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLE 199
Query: 56 --SGQRLENNRAGERV--AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSA 111
S + GE V KR+P DFALWKA+K GEPSWDSPWG GRPGWHIECSA
Sbjct: 200 PESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSA 259
Query: 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN--VSYWMHNGHVTNNNEKMSK 169
M+++ L DIH GGIDL FPHH+NE+AQS A D + V+Y++H+GH+ KMSK
Sbjct: 260 MASNILGDPIDIHSGGIDLKFPHHDNELAQS-EAYFDKHQWVNYFLHSGHLHIKGLKMSK 318
Query: 170 SLGNFFTIRQITERYHPLALR-HFLISAHYRSPLNYSVLQLDSA--SDAVFYIYQTLQDC 226
SL NF TIRQ +Y +R FL+ + P+NYS +D A D VF+ + +
Sbjct: 319 SLKNFITIRQALSKYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNF--FANV 375
Query: 227 EVALSPFQEHGKTARINPAAEDCINKLR---DEFHARMSDDLNTSHILTGAFQDALKFIN 283
++ L + + + HA + D+ +T L A Q + N
Sbjct: 376 KIKLRESEL-TSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQ-ALQKLISATN 433
Query: 284 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAE 343
+ LN +QP LR + V ++L I GL+ Q
Sbjct: 434 TYLN--SGEQPSAPL------LRSVAQYVTKILSIFGLVEGSDGLGSQGQNS-------- 477
Query: 344 LTEEDVLQLIEE--------RAAARKNKD-----------FSKSDQIRAD-LTRKGIALM 383
T E+ L+E R AA+ D++R + L GI +
Sbjct: 478 -TSENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIE 536
Query: 384 DM-GKETIWRPC----VLVEQEQEAPPAEKEKKPAATGEEQKA 421
D ++W+ + E+E++ E+++ +E+K
Sbjct: 537 DKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKK 579
|
Length = 651 |
| >gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 2e-81
Identities = 138/409 (33%), Positives = 192/409 (46%), Gaps = 64/409 (15%)
Query: 9 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGER 68
P+ ++H++ + +I ++ Y G+V+F + P+YG L+ +E+ +AG R
Sbjct: 119 PSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGAR 178
Query: 69 VAVDSRKRNPADFALWKAAKAGEP---SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 125
+ D+ KRNP DF LW E +WDSPWG G PGWHIECSAMS YL + DIH
Sbjct: 179 IEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHI 238
Query: 126 GGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-Y 184
GG+D I HH NEIAQ AA V YW+H+ + N KMSKS G F T+ + E+ +
Sbjct: 239 GGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGF 298
Query: 185 HPLALRHFLISAHYRSPLNYS------------------VLQLDSASDAVFYIYQTLQDC 226
PL R FL+ HYRS L +S +D+A + TL +C
Sbjct: 299 QPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAEC 358
Query: 227 ---EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283
VA S +E + +F A + DD +T L
Sbjct: 359 AAERVAESR----------ASESELLL----TDFRAALEDDFSTPKAL------------ 392
Query: 284 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAE 343
S L L K L L + ++ + +LGL G E L + A
Sbjct: 393 SELQKLVKDTSVPPSLCL--------SVLQAMDTVLGL---GLIQEATASLSAQV--PAG 439
Query: 344 LTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
+EE++ QLIE RA AR+ KDF +D+IR L +GI L D TIW+
Sbjct: 440 PSEEEIGQLIEARAHARQTKDFPLADEIRDKLKAEGIELEDTHLGTIWK 488
|
Length = 490 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 5e-61
Identities = 64/101 (63%), Positives = 76/101 (75%)
Query: 105 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN 164
WHIECSAM+ YL FDIHGGG+DLIFPHHENEIAQS AA YW+H GH+T +
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG 172
Query: 165 EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 205
EKMSKSLGNF T+R ++Y P LR L+S+HYRSPL++S
Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 3e-57
Identities = 100/281 (35%), Positives = 154/281 (54%), Gaps = 37/281 (13%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLS 56
M L+ LPP + ++++ +M+ +++ + AY+VEG DV+F+++ + +G S
Sbjct: 114 MEALRVLPPRDYIGAVESIDEVVEMVEKLLASGAAYIVEGPEYPDVYFSIDATEQFGYES 173
Query: 57 G------QRLENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 108
G L R G +R KR+P D LW+AA+ GEPSWDSP+G GRPGWHIE
Sbjct: 174 GYDRATMLELFAERGGDPDRPG----KRDPLDALLWRAAREGEPSWDSPFGRGRPGWHIE 229
Query: 109 CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS-YWMHNGHVTNNNEKM 167
CSA++ + L + FDI GGG DLIFPHHE A + AA ++ +++H G + + EKM
Sbjct: 230 CSAIALNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKM 289
Query: 168 SKSLGNFFTIRQIT-ERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDC 226
SKSLGN + ++ P A+R L++ HYR ++ +DAV L +
Sbjct: 290 SKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDW--------TDAV------LAEA 335
Query: 227 EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNT 267
E L+ ++ P A D I +LR +++DL+T
Sbjct: 336 EARLARWRA-ALALPDAPDATDLIARLRQH----LANDLDT 371
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 411 |
| >gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 8e-55
Identities = 96/277 (34%), Positives = 144/277 (51%), Gaps = 29/277 (10%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLS 56
M L+ LPP + + ++ +++ +++ + AYVV+ DV+F+V+ +P +G S
Sbjct: 87 MEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYES 146
Query: 57 GQRLENNRA--GERVAVDSR--KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAM 112
G ER R KR+P D LW+AA+ GEPSW SP+GPGRPGWHIECSA+
Sbjct: 147 GYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAI 206
Query: 113 SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC-QDSNVSYWMHNGHVTNNNEKMSKSL 171
+ + L S FDI GGG DLIFPHHE A + AA + +++H G + + EKMSKS
Sbjct: 207 ALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSR 266
Query: 172 GNFFTIRQIT-ERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230
GN + ++ P A+R L++ HYR+ ++ L A L A
Sbjct: 267 GNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEA-------RLARWRAAA 319
Query: 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNT 267
+ P A D + ++R ++DDL+T
Sbjct: 320 A--------LPAGPDAADVVARVRA----ALADDLDT 344
|
Length = 384 |
| >gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-49
Identities = 115/387 (29%), Positives = 183/387 (47%), Gaps = 47/387 (12%)
Query: 16 SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNR--AGERVAVDS 73
S+++ + +++ + N Y V G+V+F +YG+++G L + + + RV +D
Sbjct: 124 SEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDK 183
Query: 74 RKRNPADFALW---KAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 130
KRN +DF LW K E WDSPWG G P WH+EC+AM+ Y S DIH GG+D
Sbjct: 184 SKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDH 243
Query: 131 IFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI-TERYHPLAL 189
I HH NEIA + ++H + EKMSKS NF TI+ + + + PL
Sbjct: 244 IGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDF 303
Query: 190 RHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC 249
R+F ++AHYR+ L ++ L + A + L +L F +N +D
Sbjct: 304 RYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFD-------LNLLNKDL 356
Query: 250 IN-------KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
N + D F +++ DLN L L K LS +
Sbjct: 357 ENIEFSLEKEYYDSFLEKIAFDLNIPQGLA----------------LLWDIIKDDNLSFL 400
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
LR + + EVL + G E+L+++++ + + ++++ LIEER A+
Sbjct: 401 SKLR-LAFKFDEVLSL------GLREEILREIENHRI----VIDDNMKSLIEERRLAKCE 449
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKET 389
KDF ++D+IR KG L+D + T
Sbjct: 450 KDFKRADEIREYFASKGFVLIDTEEGT 476
|
Length = 481 |
| >gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 3e-21
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 38/188 (20%)
Query: 208 QLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNT 267
L+ A A+ +Y L+ D + F A M DD NT
Sbjct: 3 NLEDARAALERLYTALRGVPPT--------------TVDIDWGEPFAERFIAAMDDDFNT 48
Query: 268 SHILTGAFQDALKF-INSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL--PP 324
A A+ F + +N LKK+ ++ +L L+ + +LGLL P
Sbjct: 49 P----EAL--AVLFELAREINRLKKEDIEKAA-ALAALLKALGG-------VLGLLQQDP 94
Query: 325 GAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMD 384
A+ LQ L+ ++ LI +R ARK KD++++D+IR +L +GI L D
Sbjct: 95 EAF---LQG----GTGEGGLSVAEIEALIAQRNQARKAKDWAEADRIRDELAAQGIILED 147
Query: 385 MGKETIWR 392
+ T WR
Sbjct: 148 SPEGTTWR 155
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. Length = 156 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 23/90 (25%)
Query: 121 FDIHGGGIDLI--------FPHHENEIAQSCAACQDSN--VSYW----MHNGHVTNNNEK 166
DI+ GG + F H A D + G V EK
Sbjct: 225 VDIYIGGKEHAPNHLLYSRFNHK---------ALFDEGLVTDEPPKGLIVQGMVLLEGEK 275
Query: 167 MSKSLGNFFTIRQITERYHPLALRHFLISA 196
MSKS GN T + ++Y A R +++ A
Sbjct: 276 MSKSKGNVVTPDEAIKKYGADAARLYILFA 305
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195
+G +T +KMSKS GN ++ E+Y ALR++L
Sbjct: 324 HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLAR 362
|
Length = 558 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
+G +T KMSKS GN ++ +RY ALR++L
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLARE 354
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
+G++T +KMSKS GN + ERY ALR++L+
Sbjct: 271 HGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRE 310
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
NGH+ N+EKMSKS GNF T+RQ E + A R L A
Sbjct: 709 NGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADA 748
|
Length = 1084 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 104 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS-CAACQDSNVSYWMHNGHVT- 161
+ +A ++ DIH GG D + H E + A + + G V
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARP--FGLTFGRVMG 133
Query: 162 NNNEKMSKSL 171
+ KMSKS
Sbjct: 134 ADGTKMSKSK 143
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
NG V +KMSKS GN +R+ E Y +R +L S+
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSS 607
|
Length = 897 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
NG+V +KMSKS GN T+ Q E++ R ++ A
Sbjct: 611 NGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADA 650
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 93 SWDSPWGPGRPGWHIEC-------SAMSAHYLSSKF--------DIHGGGIDLIFPHHEN 137
S WG P + S Y K D H G D++
Sbjct: 184 SRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANF 243
Query: 138 EIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195
I A + + +G V +KMSKS GN + E+Y ALR++L S
Sbjct: 244 WITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTS 302
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 157 NGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
G V EKMSKS GN + E+Y +R +++ A
Sbjct: 569 QGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFA 609
|
Length = 814 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 47/205 (22%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS----------------AHYRS 200
+G +T + EKMSKSLGN + + Y A+R+FL+ +
Sbjct: 290 HGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349
Query: 201 PLNYSVLQLDSASDAVFYIYQTLQDCEVAL-SPFQEHGKTARINPAAEDCINKLRDEFH- 258
L + L + ++ + + P + AA + ++R
Sbjct: 350 DLANDLGNLAQRTLSMIAKN-----FDGKVPEPGALTEADEALLEAAAALLERVRAAMDN 404
Query: 259 ARMSDDLNTSHILTGAFQDALKFINSSLNM-----LKKKQPKQQQLSLIESLRKIENEVK 313
L A ++ N ++ L K P E L + +
Sbjct: 405 LAFDKALE-------AILALVRAANKYIDEQAPWSLAKTDP--------ERLATVLYTLL 449
Query: 314 EVLRILGLL--P--PGAYSEVLQQL 334
EVLR + +L P P +++L QL
Sbjct: 450 EVLRGIAVLLQPVMPELAAKILDQL 474
|
Length = 511 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 158 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195
G++T KMSKSLGN + R+ LR++L+
Sbjct: 319 GYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLK 356
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
+ ++T K SKS G + ERY P LR++L +
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAAN 364
|
Length = 556 |
| >gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 162 NNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
EK+SKS GN TI E P +LR F+
Sbjct: 276 KKGEKISKSKGNVITIEDWLEYAPPESLRLFMF 308
|
Length = 510 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 100.0 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0436 | 578 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 99.97 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 99.97 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 99.97 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 99.97 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 99.96 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 99.96 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 99.96 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 99.96 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 99.96 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 99.96 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 99.96 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 99.96 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 99.95 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 99.95 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.95 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 99.95 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 99.94 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 99.94 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 99.94 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 99.94 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 99.93 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 99.93 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 99.92 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 99.91 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 99.91 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 99.91 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 99.89 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.88 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 99.88 | |
| KOG0432 | 995 | consensus Valyl-tRNA synthetase [Translation, ribo | 99.88 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 99.85 | |
| cd07963 | 156 | Anticodon_Ia_Cys Anticodon-binding domain of cyste | 99.83 | |
| KOG0433 | 937 | consensus Isoleucyl-tRNA synthetase [Translation, | 99.82 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.81 | |
| KOG1247 | 567 | consensus Methionyl-tRNA synthetase [Translation, | 99.81 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.77 | |
| KOG0434 | 1070 | consensus Isoleucyl-tRNA synthetase [Translation, | 99.72 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 99.72 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.71 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.68 | |
| KOG0437 | 1080 | consensus Leucyl-tRNA synthetase [Translation, rib | 99.62 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.6 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 99.58 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.55 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.54 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.25 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 99.19 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.03 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 98.85 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 98.83 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 98.8 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 98.73 | |
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 98.59 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 98.47 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 98.46 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 98.44 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 98.39 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 98.36 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 98.35 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 98.28 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 98.24 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 98.24 | |
| PF09190 | 63 | DALR_2: DALR domain; InterPro: IPR015273 The amino | 98.24 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 98.2 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 98.15 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 98.13 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 98.09 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 98.06 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 98.02 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 97.99 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 97.97 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 97.94 | |
| smart00840 | 56 | DALR_2 This DALR domain is found in cysteinyl-tRNA | 97.92 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 97.88 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 97.84 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 97.71 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 97.64 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 97.59 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 97.56 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 97.53 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 97.44 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 97.39 | |
| PF05746 | 119 | DALR_1: DALR anticodon binding domain; InterPro: I | 97.25 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 97.21 | |
| KOG4426 | 656 | consensus Arginyl-tRNA synthetase [Translation, ri | 97.18 | |
| KOG1195 | 567 | consensus Arginyl-tRNA synthetase [Translation, ri | 97.04 | |
| cd07955 | 81 | Anticodon_Ia_Cys_like Anticodon-binding domain of | 96.99 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 96.91 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 96.59 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 96.56 | |
| smart00836 | 122 | DALR_1 DALR anticodon binding domain. This all alp | 96.55 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 96.48 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 96.46 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 96.36 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 96.28 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 96.02 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 95.57 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 95.42 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 95.34 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 95.3 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 94.75 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 94.57 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 94.55 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 94.43 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 94.29 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 93.92 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 93.25 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 92.13 | |
| KOG1149 | 524 | consensus Glutamyl-tRNA synthetase (mitochondrial) | 92.05 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 91.86 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 90.47 | |
| PLN02886 | 389 | aminoacyl-tRNA ligase | 81.65 | |
| KOG1147 | 712 | consensus Glutamyl-tRNA synthetase [Translation, r | 81.02 |
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-111 Score=837.71 Aligned_cols=356 Identities=48% Similarity=0.827 Sum_probs=313.2
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccc-cchhhhCCCCccccccccCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQ-RLENNRAGERVAVDSRKRNP 78 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~-~~~~~~~g~~v~~~~~K~~p 78 (421)
|++|||+||+.+||||+||++||+||++|++|||||++ +|+|||||++|++||+||++ +++++..|+|++.+.+||||
T Consensus 100 ~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp 179 (464)
T COG0215 100 MDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNP 179 (464)
T ss_pred HHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCc
Confidence 68999999999999999999999999999999999999 79999999999999999966 88999999999999999999
Q ss_pred CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEee
Q 014658 79 ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHN 157 (421)
Q Consensus 79 ~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~ 157 (421)
.||+|||+++||||+|+||||+||||||||||||+.++||.++|||+||.||+||||+||+||++|+++ ++|+++|||+
T Consensus 180 ~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~ 259 (464)
T COG0215 180 LDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHN 259 (464)
T ss_pred hhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred eeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 014658 158 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG 237 (421)
Q Consensus 158 g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 237 (421)
|||+++|+|||||+||||++.|++++|++.++|||||++||+++++||++.|.++.+.+.+|++++..+........
T Consensus 260 G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~--- 336 (464)
T COG0215 260 GFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAE--- 336 (464)
T ss_pred ceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999998876543211110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHh
Q 014658 238 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 317 (421)
Q Consensus 238 ~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ 317 (421)
.. ...++..+|.++|+|||||+.|++. |+++++.+|..++.... ....++..+..++.
T Consensus 337 ----~~-----~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 394 (464)
T COG0215 337 ----LA-----DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGKS------------DAKAVLSALKALLA 394 (464)
T ss_pred ----cc-----hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhcccc------------chHHHHHHHHHHHH
Confidence 00 3456677899999999999999999 99999999876654331 11122334444444
Q ss_pred Hhc-----cCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEE
Q 014658 318 ILG-----LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392 (421)
Q Consensus 318 ilG-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~ 392 (421)
+|| +.++. .. ......++.|++||++|.+||++|+|++||+||++|.++||.|+|+|+||+|+
T Consensus 395 ~lg~~~l~~~~~~-~~-----------~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~gt~w~ 462 (464)
T COG0215 395 ILGLKVLGLFPQS-GA-----------QEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDGTTWR 462 (464)
T ss_pred HhCchhhcccccc-cc-----------ccccchHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCcEEEECCCCeEEE
Confidence 444 44431 00 01112467899999999999999999999999999999999999999999999
Q ss_pred e
Q 014658 393 P 393 (421)
Q Consensus 393 ~ 393 (421)
+
T Consensus 463 ~ 463 (464)
T COG0215 463 R 463 (464)
T ss_pred e
Confidence 7
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-105 Score=820.68 Aligned_cols=391 Identities=64% Similarity=1.089 Sum_probs=330.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||.+|+++||||+||++|+++|++|++||+||+++|+|||||++|++||+||+++++++..|+||+.++.|+||.|
T Consensus 158 ~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~D 237 (557)
T PLN02946 158 MAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPAD 237 (557)
T ss_pred HHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV 160 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l 160 (421)
|||||++++|||+|+||||+||||||||||||+.+|||.++|||+||+||+||||+||+||++|+.+.+|+++|||+|||
T Consensus 238 FaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v 317 (557)
T PLN02946 238 FALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFV 317 (557)
T ss_pred cceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Q 014658 161 TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240 (421)
Q Consensus 161 ~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 240 (421)
+++|+|||||+||+|++.|++++||+|++|||||+++|+++++||++.|.++.+.+.++++++.++...+..........
T Consensus 318 ~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~~~ 397 (557)
T PLN02946 318 TVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKD 397 (557)
T ss_pred EeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999998888888888777654432210000000
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 241 ~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
..+..+...+..+.+.|.++|+|||||+.|+.. |+++++.+|.+++.... ... ......+..+...+..++.+||
T Consensus 398 ~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~vLG 472 (557)
T PLN02946 398 SVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLHTRKG---KKQ-EKRLESLAALEKKIRDVLSVLG 472 (557)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhhhccc---ccc-cchHHHHHHHHHHHHHHHHHcC
Confidence 112223345667788999999999999999999 99999999999865320 000 0012234455667888889999
Q ss_pred cCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEeCccc
Q 014658 321 LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLV 397 (421)
Q Consensus 321 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~ 397 (421)
|... +....+++..........+.+++++.||++|++||++|||++||+||++|.++||.|+|||+||+|++..|.
T Consensus 473 l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~Gi~l~Dt~~Gt~w~~~~~~ 548 (557)
T PLN02946 473 LMPT-SYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPL 548 (557)
T ss_pred CCch-hhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEECCCCceEEEcCCC
Confidence 9542 111111111111111122334579999999999999999999999999999999999999999999998665
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-100 Score=786.63 Aligned_cols=356 Identities=46% Similarity=0.780 Sum_probs=310.3
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+++||||+||++|+++|++|++||+||++ +|+|||||++|++||+||+++++++..|+||+.+++|+||.
T Consensus 326 ~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~ 405 (699)
T PRK14535 326 ADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPL 405 (699)
T ss_pred HHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCcc
Confidence 57899999999999999999999999999999999987 68999999999999999999999999999999988999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-----------
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD----------- 148 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~----------- 148 (421)
||||||++++|||.|+||||+||||||||||||+.+|||.++|||+||.||+||||+||+||++|+.++
T Consensus 406 DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~ 485 (699)
T PRK14535 406 DFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHH 485 (699)
T ss_pred ccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred -----CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 014658 149 -----SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTL 223 (421)
Q Consensus 149 -----~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l 223 (421)
+|+++|||+|||+++|+|||||+||+|+|.+++++||+|++|||+|+++|+++++||++.|.++.+.+.++++.+
T Consensus 486 ~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l 565 (699)
T PRK14535 486 GQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTL 565 (699)
T ss_pred cccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHH
Q 014658 224 QDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIE 303 (421)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~ 303 (421)
..+... . ......+..+.+.|.++|+||||++.|+.. |+++++.+|++.. .
T Consensus 566 ~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L~~lvk~iN~~~~--~------------- 616 (699)
T PRK14535 566 KNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAV-LFELAGEVNKTND--A------------- 616 (699)
T ss_pred Hhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHHHH--H-------------
Confidence 654210 0 001123456778999999999999999999 9999999998631 0
Q ss_pred HHHHHHHHHHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEE
Q 014658 304 SLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALM 383 (421)
Q Consensus 304 ~l~~~~~~l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~ 383 (421)
.+...+..+..+|||... ...+.... . .....+.+++|+.||++|++||++|||++||+||++|.++||.|+
T Consensus 617 ---~~~~~l~~~~~vLGl~~~-~~~~~~~~---~-~~~~~~~~~~i~~Li~~R~~AR~~Kdfa~AD~IRd~L~~~GI~ve 688 (699)
T PRK14535 617 ---QLAGCLKALGGIIGLLQR-DPTEFLQG---G-AASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILE 688 (699)
T ss_pred ---HHHHHHHHHHhhcCCCcc-chhhhhhc---c-cccccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEE
Confidence 012335567788998532 11111100 0 001122345799999999999999999999999999999999999
Q ss_pred ecCCCeEEEe
Q 014658 384 DMGKETIWRP 393 (421)
Q Consensus 384 D~~~Gt~W~~ 393 (421)
|||+||+|++
T Consensus 689 Dt~~Gt~W~~ 698 (699)
T PRK14535 689 DNAGGTTWRR 698 (699)
T ss_pred EcCCCceEee
Confidence 9999999986
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-98 Score=736.57 Aligned_cols=378 Identities=42% Similarity=0.653 Sum_probs=316.3
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC-CccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-NYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~-~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||+|||+.||||+|||+||.||++||+||+||.++|+|||||.+|+ +||+|+++. +.+..|+.+..++.||+|.
T Consensus 139 M~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~ 217 (586)
T KOG2007|consen 139 MAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQR-KNLQEGEGVLSDSRKRSPA 217 (586)
T ss_pred HHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecccccchhhhhcCch-hhcccCcCccccccCCChh
Confidence 78999999999999999999999999999999999999999999999999 699999876 7788888888889999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNG 158 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g 158 (421)
||||||++|+|||+|+||||+||||||||||||+..+||..+|||+||.||.||||+||+||++|.+.. +|+|||+|+|
T Consensus 218 DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtG 297 (586)
T KOG2007|consen 218 DFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTG 297 (586)
T ss_pred hhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999875 6999999999
Q ss_pred eeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 014658 159 HVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238 (421)
Q Consensus 159 ~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 238 (421)
||+++|+||||||+||||+++++++|+|+++|++||+++|+++++||.+.+..+......+.+++..+..+.........
T Consensus 298 hL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~~~~~ 377 (586)
T KOG2007|consen 298 HLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEK 377 (586)
T ss_pred eeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 99999999999999999999999999999999999999999999999999988876544444444333332222111111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhH
Q 014658 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRI 318 (421)
Q Consensus 239 ~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~i 318 (421)
....+.++...+......|+.+++|+|+++.++.. +.+++..+|.||....- +....+|.++..+|..++.+
T Consensus 378 ~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~-~~~lvs~~N~~i~~~~~-------~~~~~~L~~I~~yIt~~l~i 449 (586)
T KOG2007|consen 378 LSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA-IRELVSQGNAYIRESGE-------RPNSALLKAIASYITKLLKI 449 (586)
T ss_pred cChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-HHHHHhhhhHHHHHhcc-------ccchHHHHHHHHHHHHHHHH
Confidence 23445678888999999999999999999999999 99999999999987651 11236677888999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHh----cCC---ChHHHHHHHHH-hHhcCcEEEecCCCeE
Q 014658 319 LGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR----KNK---DFSKSDQIRAD-LTRKGIALMDMGKETI 390 (421)
Q Consensus 319 lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR----~~K---~f~~aD~IRd~-L~~~GI~l~D~~~Gt~ 390 (421)
||+........+ . ... ...-++.|++.|...| ..+ -.++||.||+. |.++|+.++|.+ |++
T Consensus 450 fG~~e~~g~q~~--------~-e~~-~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~d~lR~~~l~~~g~~led~~-g~~ 518 (586)
T KOG2007|consen 450 FGLSEGKGQQYV--------L-EAT-VMPYVQSLSEFREKVREVAREKKVPEILELCDTLRDSDLLELGVRLEDRK-GST 518 (586)
T ss_pred hCCCcccccccc--------c-ccc-hhHHHHHHHHHHHHHHHHHHhcchHHHHHHhHHHHHhhHHHhhhHHHhCC-chH
Confidence 999752111100 0 000 0122445555544444 332 35899999985 999999999999 999
Q ss_pred EEeCccch
Q 014658 391 WRPCVLVE 398 (421)
Q Consensus 391 W~~~~~~~ 398 (421)
|.+.+-++
T Consensus 519 lvk~v~~e 526 (586)
T KOG2007|consen 519 LVKAVDRE 526 (586)
T ss_pred HHHHhhhH
Confidence 98887664
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-97 Score=753.20 Aligned_cols=367 Identities=36% Similarity=0.592 Sum_probs=312.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||.+|+++||||+||++|+++|++|++||+||+++|+|||||++|++||+||+++++++..|++|+.++.|+||.|
T Consensus 111 ~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~D 190 (490)
T PRK14536 111 TARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHD 190 (490)
T ss_pred HHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cccccccc--CC-CCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEee
Q 014658 81 FALWKAAK--AG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN 157 (421)
Q Consensus 81 F~LWk~~~--~~-~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~ 157 (421)
|||||+++ ++ +|+|+||||+||||||||||||+.+|||.++|||+||+||+||||+||+||++|+++.+|+++|||+
T Consensus 191 FaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~ 270 (490)
T PRK14536 191 FVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHH 270 (490)
T ss_pred chhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcCCCcceEEEEc
Confidence 99999865 44 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q 014658 158 GHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH 236 (421)
Q Consensus 158 g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~ 236 (421)
|+|+++|+|||||+||+|++.|++++ |+++++|||||+++|+++++||++.|.++.+.+.+|++++..+..........
T Consensus 271 g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~ 350 (490)
T PRK14536 271 EFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGS 350 (490)
T ss_pred CEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999998 99999999999999999999999999999999999999887664322111000
Q ss_pred --C----C-CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHH
Q 014658 237 --G----K-TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 309 (421)
Q Consensus 237 --~----~-~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~ 309 (421)
. . .......+...+..+...|.++|+|||||+.|++. |+++++.+|.- + ..+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~~~n~~-----~--------------~~~~ 410 (490)
T PRK14536 351 VRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVKDTSVP-----P--------------SLCL 410 (490)
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhhhh-----H--------------HHHH
Confidence 0 0 00000111233556788999999999999999999 99999998851 0 0123
Q ss_pred HHHHHHHhHhccC-CCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCC
Q 014658 310 NEVKEVLRILGLL-PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKE 388 (421)
Q Consensus 310 ~~l~~~l~ilGi~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~G 388 (421)
..+..+..+|||. .... .....+ .......+++++.||++|++||++|||++||+||++|.++||.|+|||+|
T Consensus 411 ~~~~~~~~vLGl~~~~~~-~~~~~~-----~~~~~~~~~~i~~li~~R~~aR~~kdf~~AD~iR~~L~~~Gi~l~Dt~~G 484 (490)
T PRK14536 411 SVLQAMDTVLGLGLIQEA-TASLSA-----QVPAGPSEEEIGQLIEARAHARQTKDFPLADEIRDKLKAEGIELEDTHLG 484 (490)
T ss_pred HHHHHHHhhcCcccccch-hhhhhh-----cccccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCC
Confidence 4566677899984 2101 111000 00111224569999999999999999999999999999999999999999
Q ss_pred eEEEe
Q 014658 389 TIWRP 393 (421)
Q Consensus 389 t~W~~ 393 (421)
|+|++
T Consensus 485 t~w~~ 489 (490)
T PRK14536 485 TIWKR 489 (490)
T ss_pred ceEEe
Confidence 99986
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-96 Score=752.13 Aligned_cols=362 Identities=48% Similarity=0.828 Sum_probs=325.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||.+|+.+||+|+|++.|+++|++|+++|+||+++|+|||||++|++||+||+++++++..|.||+.+++|+||+|
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~D 180 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLD 180 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV 160 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l 160 (421)
|||||++++|+|+|+||||+||||||||||||+.++||.++|||+||+||+||||+|++||++|++++||+++|||+|||
T Consensus 181 F~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g~p~~~~w~H~g~v 260 (463)
T PRK00260 181 FALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATGKPFANYWMHNGFV 260 (463)
T ss_pred cceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcCCCcceEEEEccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred eeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Q 014658 161 TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240 (421)
Q Consensus 161 ~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 240 (421)
+++|+|||||+||+|+|.|++++||+|++|||+++++|+++++|+++.+.++.+.+.++++.+.++.. .
T Consensus 261 ~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-----------~ 329 (463)
T PRK00260 261 TVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETAL-----------G 329 (463)
T ss_pred ccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh-----------c
Confidence 99999999999999999999999999999999999999999999999999999999999998876531 1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 241 ~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
..+.++...+..+.+.|.++|+||||++.|++. |+++++.+|.|++... ...+..+...+..++.+||
T Consensus 330 ~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~~~-----------~~~~~~~~~~~~~~~~ilG 397 (463)
T PRK00260 330 EDDEALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALETKD-----------KEAAAALAALLRALADVLG 397 (463)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhccc-----------HHHHHHHHHHHHHHHHhcC
Confidence 234677778889999999999889999999999 9999999999987631 1223445677888899999
Q ss_pred cCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 321 LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 321 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
|... ... . .. .......++.++.|+++|++||++|||++||+||++|.++||.|+|+|+||+|++
T Consensus 398 ~~~~-~~~-~---~~---~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~v~D~~~G~~w~~ 462 (463)
T PRK00260 398 LEQD-EEA-L---FE---AAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDGTTWRR 462 (463)
T ss_pred CCch-hhh-h---hh---cccccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcCCCceEEe
Confidence 9432 100 0 00 0011123567999999999999999999999999999999999999999999986
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-96 Score=778.35 Aligned_cols=383 Identities=34% Similarity=0.564 Sum_probs=324.2
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC----Ccccccc---ccchhhhCCCC-c-cc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----NYGRLSG---QRLENNRAGER-V-AV 71 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~----~Yg~ls~---~~~~~~~~g~~-v-~~ 71 (421)
|++|||++|+++||||+||++|++||++|++|||||+++|+|||||++|+ .||+|++ ++++.+..|++ + +.
T Consensus 140 ~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~ 219 (651)
T PTZ00399 140 MKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKV 219 (651)
T ss_pred HHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCcccc
Confidence 67999999999999999999999999999999999999999999999997 8999994 55667777876 5 34
Q ss_pred cccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CC
Q 014658 72 DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SN 150 (421)
Q Consensus 72 ~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~ 150 (421)
++.||||.||||||.++||||.|+||||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|++++ +|
T Consensus 220 ~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~ 299 (651)
T PTZ00399 220 SGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQW 299 (651)
T ss_pred CcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 151 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 151 ~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
+++|+|+|||+++|+|||||+||||+|.|++++||+|++|||||+++|++|++||++.+.++.+...++++.+.++...+
T Consensus 300 v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l 379 (651)
T PTZ00399 300 VNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKL 379 (651)
T ss_pred CcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887777777666554433
Q ss_pred CCccc--CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHH
Q 014658 231 SPFQE--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKI 308 (421)
Q Consensus 231 ~~~~~--~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~ 308 (421)
..... .......+.+++..+..+...|.++|+|+|+++.|++. |+++++.+|.|++... ..+...+.++
T Consensus 380 ~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv~~~N~yi~~~~--------~~~~~ll~~v 450 (651)
T PTZ00399 380 RESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA-LQKLISATNTYLNSGE--------QPSAPLLRSV 450 (651)
T ss_pred hhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHhccc--------cchHHHHHHH
Confidence 22110 00112345678888999999999999889999999999 9999999999997311 1134456677
Q ss_pred HHHHHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhc----C-----------CChHHHHHHHH
Q 014658 309 ENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARK----N-----------KDFSKSDQIRA 373 (421)
Q Consensus 309 ~~~l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~----~-----------K~f~~aD~IRd 373 (421)
..++..++.||||.... ..+..-+... ........++.|++.|+++|+ + |+|++||+|||
T Consensus 451 ~~~l~~~l~ILGl~~~~---~m~~~~~~~~--~~~~~~~~i~~l~~~R~~~R~~a~~~~~~~~~~~~~~~~~~~~D~iRd 525 (651)
T PTZ00399 451 AQYVTKILSIFGLVEGS---DGLGSQGQNS--TSENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRD 525 (651)
T ss_pred HHHHHHHHhcccCCcch---hhcccccccc--chhhhHHHHHHHHHHHHHHHHHHHhccccccchhhhhhHHHHHHHHHH
Confidence 88899999999995431 0000000000 000112458899999999994 4 88999999999
Q ss_pred -HhHhcCcEEEecCCC-eEEEeCccc
Q 014658 374 -DLTRKGIALMDMGKE-TIWRPCVLV 397 (421)
Q Consensus 374 -~L~~~GI~l~D~~~G-t~W~~~~~~ 397 (421)
.|.++||.|+|+++| |+|++.++.
T Consensus 526 ~~L~~~Gi~l~D~~~g~~~~~~~~~~ 551 (651)
T PTZ00399 526 EWLPNLGIRIEDKPDGPSVWKLDDKE 551 (651)
T ss_pred HHHHHCCCEEEEcCCCceEEEECCHH
Confidence 599999999999999 799998866
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-95 Score=740.28 Aligned_cols=366 Identities=31% Similarity=0.507 Sum_probs=308.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhh--CCCCccccccccCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNR--AGERVAVDSRKRNP 78 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~--~g~~v~~~~~K~~p 78 (421)
|++|||.+|+++||||+||++|+++|++|++||+||+++|+|||||++|++||+||+++++++. .|.+|+++..|+||
T Consensus 109 ~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np 188 (481)
T PRK14534 109 CKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNK 188 (481)
T ss_pred HHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999987 89999998899999
Q ss_pred Ccccccccc---cCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEE
Q 014658 79 ADFALWKAA---KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 155 (421)
Q Consensus 79 ~DF~LWk~~---~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~ 155 (421)
.||||||.+ ++++|+|+||||.||||||||||||+.++||.++|||+||+||+||||+||+||++|+.+.+|+++||
T Consensus 189 ~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~ 268 (481)
T PRK14534 189 SDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFV 268 (481)
T ss_pred ccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcCCCcceEEE
Confidence 999999975 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ 234 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~ 234 (421)
|+|||+++|+|||||+||+|++.|++++ |+++++|||+|++||+++++||++.|.++.+.+.++++++..+...+....
T Consensus 269 H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~ 348 (481)
T PRK14534 269 HGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFD 348 (481)
T ss_pred EecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999996 999999999999999999999999999999999999988876543332100
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHH
Q 014658 235 EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 314 (421)
Q Consensus 235 ~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~ 314 (421)
..................+.+.|.++|+||||++.|++. |+++++.+|... .. ... +...+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~~~--~~----------~~~----~~~~~~~ 411 (481)
T PRK14534 349 LNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNLSF--LS----------KLR----LAFKFDE 411 (481)
T ss_pred ccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHhh--hh----------HHH----HHHHHHH
Confidence 000000000000012245667899999999999999999 999999999741 00 011 1223445
Q ss_pred HHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 315 VLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 315 ~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
++. ||+... . +.... ......++.|+.||++|++||++|||++||+||++|.++||.|+|||+||+|++
T Consensus 412 ~~~-lg~~~~--~---~~~~~----~~~~~~~~~i~~li~~R~~aR~~Kd~~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 480 (481)
T PRK14534 412 VLS-LGLREE--I---LREIE----NHRIVIDDNMKSLIEERRLAKCEKDFKRADEIREYFASKGFVLIDTEEGTKVKR 480 (481)
T ss_pred HHh-CCCCcc--c---chhhc----cccccCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHCCCEEEEcCCCCEEEe
Confidence 555 777322 0 00000 001112456999999999999999999999999999999999999999999986
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-93 Score=728.98 Aligned_cols=365 Identities=46% Similarity=0.759 Sum_probs=313.6
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC-CcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~-~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+||+|+|++.|+++|++|+++|+||+++ |+|||||++|++||+||+++++++..|.+|+.+++|+||.
T Consensus 99 l~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~ 178 (465)
T TIGR00435 99 MKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKL 178 (465)
T ss_pred HHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCC
Confidence 578999999999999999999999999999999999998 9999999999999999999999999999999989999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||||||++++|+|+|+||||+||||||||||||+.++||.++|||+||+||+||||+|++||++|+++++|+++|||+||
T Consensus 179 DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~ 258 (465)
T TIGR00435 179 DFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGF 258 (465)
T ss_pred CceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 239 (421)
|+++|+|||||+||+|+|.|++++||+|++|||+|+++|+++++||++.|.++.+.+.+|++.+..+.........
T Consensus 259 v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~~~~---- 334 (465)
T TIGR00435 259 LMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAYSGN---- 334 (465)
T ss_pred EEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999998876433221000
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-HHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhH
Q 014658 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRI 318 (421)
Q Consensus 240 ~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N-~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~i 318 (421)
.+.........+.+.|.++|+|||||+.|++. |+++++.+| ..++. ..+..+...+..+..+
T Consensus 335 --~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~--------------~~~~~~~~~~~~l~~~ 397 (465)
T TIGR00435 335 --QSLNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSINLTFVSK--------------ADAALLIEHLIFLESR 397 (465)
T ss_pred --cccccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhhhhhcch--------------HHHHHHHHHHHHHHHh
Confidence 00001112345678899999999999999999 999999999 44321 0122345667777888
Q ss_pred hccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 319 LGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 319 lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
||+...... ...+. . .. ......++.||++|++||++|||++||+||++|.++||.|+|+|+||+|++
T Consensus 398 lg~~~~~~~-~~~~~---~-~~--~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi~~~D~~~gt~w~~ 465 (465)
T TIGR00435 398 LGLLLGLPS-KPVQA---G-SN--DDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTPQGTTWRR 465 (465)
T ss_pred cccCccccc-hhccc---c-cc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEECCCCceeeC
Confidence 998521000 00000 0 00 001135899999999999999999999999999999999999999999974
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-85 Score=625.77 Aligned_cols=214 Identities=62% Similarity=1.085 Sum_probs=183.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC-CcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~-~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||++|+++|||||||++||++|++|++||+||+++ |+|||||+++++||+||+++++++..|.+++.+.+|+||+
T Consensus 86 m~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~ 165 (300)
T PF01406_consen 86 MKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPR 165 (300)
T ss_dssp HHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT
T ss_pred HHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCc
Confidence 679999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||||||.+++|||+|+||||+||||||||||||+.++||.++|||+||.||+||||+||+||++|+++++|+++|||+||
T Consensus 166 DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~ 245 (300)
T PF01406_consen 166 DFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGH 245 (300)
T ss_dssp -EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--
T ss_pred ceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHH
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~ 214 (421)
|+++|+|||||+||+|+++|++++|+++++|||||++||+++++||++.|.++.|
T Consensus 246 l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 246 LNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998864
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-84 Score=642.82 Aligned_cols=270 Identities=34% Similarity=0.577 Sum_probs=247.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCC----cEEEeccCCCCccccccccchhhhC--CCC-cccc-
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER-VAVD- 72 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~----~vyf~v~~~~~Yg~ls~~~~~~~~~--g~~-v~~~- 72 (421)
|++|||++|+.+||||+||+.|+++|++|+++|+||++++ +|||||++|++||+||+++++++.. |.+ ++.+
T Consensus 87 ~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~ 166 (384)
T PRK12418 87 MEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDR 166 (384)
T ss_pred HHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCccc
Confidence 5789999999999999999999999999999999999987 8999999999999999999999876 666 4554
Q ss_pred ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCC
Q 014658 73 SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 151 (421)
Q Consensus 73 ~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~ 151 (421)
.+|+||+||||||++++|+|+|+||||+||||||||||||+.++||.++|||+||.||+||||+||+||++|++++ ||+
T Consensus 167 ~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~ 246 (384)
T PRK12418 167 PGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFA 246 (384)
T ss_pred ccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999986 999
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
++|||+|+|.++|+|||||+||+|+|.++++. |+++++|||||+++|+++++||++.|.++.+.+.++++.+....
T Consensus 247 ~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~~--- 323 (384)
T PRK12418 247 RHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAALPA--- 323 (384)
T ss_pred eEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhccc---
Confidence 99999999999999999999999999998764 67779999999899999999999999999999888887764310
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhc
Q 014658 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 290 (421)
Q Consensus 231 ~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~ 290 (421)
. . .+.++.+.|.++|+||||+++|+.. |+++++.+|.|+...+
T Consensus 324 ---------~---~----~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 324 ---------G---P----DAADVVARVRAALADDLDTPGALAA-VDGWATDALEGGGDDA 366 (384)
T ss_pred ---------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhccCCCc
Confidence 0 0 2344578899999999999999999 9999999999987655
|
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-83 Score=639.88 Aligned_cols=264 Identities=37% Similarity=0.634 Sum_probs=243.6
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCC----cEEEeccCCCCccccccccchhhhC--CCC-ccccc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER-VAVDS 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~----~vyf~v~~~~~Yg~ls~~~~~~~~~--g~~-v~~~~ 73 (421)
|++|||.+|+.+||||+||++|+++|++|++||+||+++| +|||||++|++||+||+++++++.. +.+ ++.+.
T Consensus 114 ~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~ 193 (411)
T TIGR03447 114 MEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDR 193 (411)
T ss_pred HHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCccc
Confidence 5789999999999999999999999999999999999876 8999999999999999999999876 566 76644
Q ss_pred -cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCC
Q 014658 74 -RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 151 (421)
Q Consensus 74 -~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~ 151 (421)
+|+||+||||||++++|||+|+||||+||||||||||||+.++||.++|||+||+||+||||+|++||++|++++ ||+
T Consensus 194 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~ 273 (411)
T TIGR03447 194 PGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMA 273 (411)
T ss_pred ccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
++|||+|+|+++|+|||||+||+|+|.++++. |++|++|||+++++|+++++||++.|.++.+.+.++++.+....
T Consensus 274 ~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~~--- 350 (411)
T TIGR03447 274 RHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALAATD--- 350 (411)
T ss_pred eEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHHHHHHHHHHHHHhhcc---
Confidence 99999999999999999999999999999886 99999999999999999999999999999988888877765321
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q 014658 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 284 (421)
Q Consensus 231 ~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~ 284 (421)
. . .+..+...|.++|+||||++.|++. |+++++.+|.
T Consensus 351 ---------~---~----~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~n~ 387 (411)
T TIGR03447 351 ---------A---P----DATDLIARLRQHLANDLDTPAALAA-VDNWAAAALS 387 (411)
T ss_pred ---------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHh
Confidence 0 0 1234567888999999999999999 9999998886
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=377.91 Aligned_cols=311 Identities=20% Similarity=0.210 Sum_probs=228.8
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--C------C-------------------C
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--S------P-------------------N 51 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--~------~-------------------~ 51 (421)
|++|||. ++.+++.|+ |++.|++++++|.++|++|++.++||||+++ + . +
T Consensus 80 l~~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~ 158 (511)
T PRK11893 80 WEALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEES 158 (511)
T ss_pred HHHhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCe
Confidence 4679997 788889988 9999999999999999999999999999987 3 1 1
Q ss_pred -cccccc--ccchhhhCC--CCccccc--------cccCCCcccccc-ccc-----CCCC-----cc-cCCCC----CCC
Q 014658 52 -YGRLSG--QRLENNRAG--ERVAVDS--------RKRNPADFALWK-AAK-----AGEP-----SW-DSPWG----PGR 102 (421)
Q Consensus 52 -Yg~ls~--~~~~~~~~g--~~v~~~~--------~K~~p~DF~LWk-~~~-----~~~~-----~w-~spwg----~gr 102 (421)
|++|+. ..+.+...+ .++..+. -|++..||++|+ ... |+++ .| ++.+| .|+
T Consensus 159 ~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~ 238 (511)
T PRK11893 159 YFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGY 238 (511)
T ss_pred EEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcc
Confidence 667665 223333222 1221121 256789999999 433 4442 24 44443 256
Q ss_pred CCCchhhHHH---HHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHH
Q 014658 103 PGWHIECSAM---SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 103 PgWhiecsam---~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~d 179 (421)
|+ +|++| ..+++ |.|+|++|+|++||||++|+||++|++.+.| +.|+|||||+++|+|||||+||+|+|.|
T Consensus 239 p~---~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~~G~KMSKS~GN~i~~~d 312 (511)
T PRK11893 239 PD---DEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTLDGEKMSKSLGNVIDPFD 312 (511)
T ss_pred cc---ccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEECCeeecccCCcEEcHHH
Confidence 66 89887 33455 7899999999999999999999999854444 7778889999999999999999999999
Q ss_pred HHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----HHHHHHHHHHHH-HhcCCcccC-CCCCCCChHHHHHHH
Q 014658 180 ITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTLQDCE-VALSPFQEH-GKTARINPAAEDCIN 251 (421)
Q Consensus 180 ll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~~-~~~~~~~~~-~~~~~~d~~l~~~l~ 251 (421)
++++||+|++||||++. ++++|++|+++.+..+.+. ++|+++++..+. .......+. ......|++++..+.
T Consensus 313 ll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 392 (511)
T PRK11893 313 LVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAA 392 (511)
T ss_pred HHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHHHHH
Confidence 99999999999999996 8899999999999776542 444444433222 121111111 112345678889999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 252 ~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
.+.+.+.++| ++|+++.|++. |+++++.+|.|++..+||.... ........+..+...++.++.++.
T Consensus 393 ~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~ 460 (511)
T PRK11893 393 ALLERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQ 460 (511)
T ss_pred HHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999 9999999999999999995221 111222334444444444444444
|
|
| >KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=343.49 Aligned_cols=316 Identities=22% Similarity=0.201 Sum_probs=239.9
Q ss_pred CCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccc--c-cc----chhhhCCCCccccc
Q 014658 3 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLS--G-QR----LENNRAGERVAVDS 73 (421)
Q Consensus 3 ~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls--~-~~----~~~~~~g~~v~~~~ 73 (421)
.+||. -|.++|.|+ |+..+.+|+..+..+|++|..+...||+|+....|-+-. . -+ .-.+..|++|-.
T Consensus 120 ~~gi~-yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~-- 196 (578)
T KOG0436|consen 120 DAGIA-YTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVW-- 196 (578)
T ss_pred HhCcc-hhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeE--
Confidence 45675 589999998 999999999999999999999999999999988776521 1 11 112455665432
Q ss_pred cccCCCcccccccccCC---------------------------C----Cccc---CCCCCCCCC--------CchhhHH
Q 014658 74 RKRNPADFALWKAAKAG---------------------------E----PSWD---SPWGPGRPG--------WHIECSA 111 (421)
Q Consensus 74 ~K~~p~DF~LWk~~~~~---------------------------~----~~w~---spwg~grPg--------Whiecsa 111 (421)
.|+...-|.|=|..++- - ++.+ -.||...|| |......
T Consensus 197 ~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~n 276 (578)
T KOG0436|consen 197 RKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLN 276 (578)
T ss_pred ecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhh
Confidence 34444455554433221 0 1222 359999998 7643333
Q ss_pred HHHh--------------hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCH
Q 014658 112 MSAH--------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTI 177 (421)
Q Consensus 112 m~~~--------------~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~ 177 (421)
+++- -+|+|..+|++||||++||++||||+++|++.++|.++++| |||+.+|.|||||+||||+|
T Consensus 277 YiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vH-ghwt~ngmKMsKSLGNvvdP 355 (578)
T KOG0436|consen 277 YISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVH-GHWTKNGMKMSKSLGNVVDP 355 (578)
T ss_pred HHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEe-eeeeecceecchhhccccCH
Confidence 3321 13788999999999999999999999999999888888776 99999999999999999999
Q ss_pred HHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHH-----HHHHHHHHHHHHHHHhcCCcccC---CC--CCCCChHH
Q 014658 178 RQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSAS-----DAVFYIYQTLQDCEVALSPFQEH---GK--TARINPAA 246 (421)
Q Consensus 178 ~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~-----~~l~~l~~~l~~~~~~~~~~~~~---~~--~~~~d~~l 246 (421)
.+++++||+|++|||||+. .++.|.||+++.+.... +.+++|.||+..-.-.+.....+ .. .......+
T Consensus 356 ~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~l 435 (578)
T KOG0436|consen 356 FELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPL 435 (578)
T ss_pred HHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchH
Confidence 9999999999999999995 89999999999997765 35788888764311011111110 00 11233567
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 247 EDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 247 ~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
.+.+..+.+.+.+.+ |+|.+++|+++ ++.+++..|.|++..+||+...+.+.....+..++..+.++++|+|++.+
T Consensus 436 v~~v~kl~ev~a~~~-d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illq 511 (578)
T KOG0436|consen 436 VDTVEKLPEVAATNY-DNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQ 511 (578)
T ss_pred HHHHHHhHHHHHhhc-ccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788899999999999 99999999999 99999999999999999974333344456677788889999999998665
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=335.78 Aligned_cols=285 Identities=16% Similarity=0.165 Sum_probs=210.7
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccch----hhhCCCCccccc-
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVDS- 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~----~~~~g~~v~~~~- 73 (421)
|++||| .+|.++|+|+ |...+.+++.+|.++|++|.....+|||+++-..|-. .++. ....|.+++..+
T Consensus 148 ~~~l~I-~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~---~~l~~~~~~~~~~~~~~~~~e 223 (616)
T PLN02224 148 WKDLDI-AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDE---KELLENNCCPVHQMPCVARKE 223 (616)
T ss_pred HHHcCC-CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCH---HHHcCCCCCCCCCCcceEEec
Confidence 357899 4799999998 9999999999999999999999999999987665432 1111 112344433211
Q ss_pred -----------------cccCCCcccc----------ccccc--CCCCccc-CCCCCCCCC--------CchhhHHHHHh
Q 014658 74 -----------------RKRNPADFAL----------WKAAK--AGEPSWD-SPWGPGRPG--------WHIECSAMSAH 115 (421)
Q Consensus 74 -----------------~K~~p~DF~L----------Wk~~~--~~~~~w~-spwg~grPg--------Whiecsam~~~ 115 (421)
...+| +|.. |-... +--++.+ ++||...|+ |.-....+...
T Consensus 224 ~~~ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~ 302 (616)
T PLN02224 224 DNYFFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISA 302 (616)
T ss_pred ceEEEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHH
Confidence 12233 2221 11111 1113454 479988887 44322222220
Q ss_pred --------------hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHH
Q 014658 116 --------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQIT 181 (421)
Q Consensus 116 --------------~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll 181 (421)
.+++|.|||++||||++||+++|||++++++.+.|.++ ++||||+++|+|||||+||+|+|.+++
T Consensus 303 ~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i-~~~g~l~~eG~KMSKS~GN~i~p~e~l 381 (616)
T PLN02224 303 LTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-FGHGFLTKDGMKMGKSLGNTLEPFELV 381 (616)
T ss_pred hcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEE-EecccEecCCccccccCCccCCHHHHH
Confidence 12468899999999999999999999998865566666 555999999999999999999999999
Q ss_pred HhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHH-HHHHhcCCcccCC-CCCCCChHHHHHHHHH
Q 014658 182 ERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQ-DCEVALSPFQEHG-KTARINPAAEDCINKL 253 (421)
Q Consensus 182 ~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~-~~~~~~~~~~~~~-~~~~~d~~l~~~l~~~ 253 (421)
++||+|++||||++. ++.+|.+|+++.+....+ .++|+++++. .+...+.+..... .....+.++++.++++
T Consensus 382 ~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~l 461 (616)
T PLN02224 382 QKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKL 461 (616)
T ss_pred HHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHH
Confidence 999999999999995 889999999999876643 4667766643 3333332211110 1123467899999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 254 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 254 ~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
...+.++| +++++++|+.. ++++++.+|+|++..+||.
T Consensus 462 i~~v~~~m-e~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 462 VEKAQTNY-ENLSLSSACEA-VLEIGNAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHH-HhccHHHHHHH-HHHHHHHHHHHHHhCCchh
Confidence 99999999 99999999999 9999999999999999995
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=326.80 Aligned_cols=325 Identities=19% Similarity=0.171 Sum_probs=231.2
Q ss_pred CCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCc----cc---------------------
Q 014658 2 ADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY----GR--------------------- 54 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Y----g~--------------------- 54 (421)
++|||. -|.|.|.|+ |..-+.++.++|.++|++|.....++||+++-..| -.
T Consensus 85 ~~l~Is-fD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~ 163 (558)
T COG0143 85 KALNIS-FDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGR 163 (558)
T ss_pred HHhCCc-ccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccC
Confidence 578997 799999977 99999999999999999999999999999875432 11
Q ss_pred -cccccch---hhhCCCCccccc------------------cccCCCcccccccc--------cCCC----Ccc-cCCCC
Q 014658 55 -LSGQRLE---NNRAGERVAVDS------------------RKRNPADFALWKAA--------KAGE----PSW-DSPWG 99 (421)
Q Consensus 55 -ls~~~~~---~~~~g~~v~~~~------------------~K~~p~DF~LWk~~--------~~~~----~~w-~spwg 99 (421)
+++..+. ....|++.++.. .+.|| ||..-... +.|- ++. +..||
T Consensus 164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred cCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 2222211 123343322111 24455 55442211 1222 344 56799
Q ss_pred CCCCC--------CchhhHHHHHh--hc---C--------CCce----EEeecccCcCcchHHHHHHHHhccCCCCCcEE
Q 014658 100 PGRPG--------WHIECSAMSAH--YL---S--------SKFD----IHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 154 (421)
Q Consensus 100 ~grPg--------Whiecsam~~~--~l---g--------~~~D----ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~ 154 (421)
...|| |--.-..++.- ++ | ++-| +|++||||++||+++||||+++++.+.|.+++
T Consensus 243 ipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ 322 (558)
T COG0143 243 IPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIF 322 (558)
T ss_pred ccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEE
Confidence 87776 65332222221 11 1 1344 99999999999999999999999988888886
Q ss_pred EeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHH-HHH
Q 014658 155 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQ-DCE 227 (421)
Q Consensus 155 ~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~-~~~ 227 (421)
.| |||+++|+|||||+||+|+|.++++.||+|++||||++. +..+|.+||++.+.+..| .++|+.||.. ++.
T Consensus 323 ah-g~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~ 401 (558)
T COG0143 323 AH-GFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFIN 401 (558)
T ss_pred ee-eeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 999999999999999999999999999999999999995 999999999999999875 4677777743 344
Q ss_pred HhcCCcccCCC--CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHH
Q 014658 228 VALSPFQEHGK--TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESL 305 (421)
Q Consensus 228 ~~~~~~~~~~~--~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l 305 (421)
+++.+..+... ..+.|++++..+..+...+.++| +.+.+++|+.. ++++++.+|+|++.++||...+. ...+.+
T Consensus 402 k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~-i~~l~~~~N~Yi~~~~PW~l~k~--~~~~~~ 477 (558)
T COG0143 402 KYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE-IMALASRANKYIDEQAPWKLAKE--DKRERL 477 (558)
T ss_pred hccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHhhcCCCchhhcc--CcHHHH
Confidence 44443322111 11456788899999999999999 99999999999 99999999999999999972221 112333
Q ss_pred HHHHHHHHHHHhHhcc-----CCCCChHHHHHHH
Q 014658 306 RKIENEVKEVLRILGL-----LPPGAYSEVLQQL 334 (421)
Q Consensus 306 ~~~~~~l~~~l~ilGi-----~~~~~~~~~~~~~ 334 (421)
.+++..+.++++++++ +|. +...++.++
T Consensus 478 ~~vl~~~~~~~r~la~ll~P~mP~-~a~ki~~~L 510 (558)
T COG0143 478 ATVLYLALELVRVLAILLYPFMPE-TAEKIWDQL 510 (558)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCcc-hHHHHHHHh
Confidence 4444445555555553 454 444444444
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=336.28 Aligned_cols=284 Identities=18% Similarity=0.172 Sum_probs=211.2
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--cc--cccchhhhCCCCcccc--
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LS--GQRLENNRAGERVAVD-- 72 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls--~~~~~~~~~g~~v~~~-- 72 (421)
|++|||. +|.++|.|+ |+..+.+++++|.++|++|.....++||+.+-..|.. |. +.+ ...|++++..
T Consensus 83 l~~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c---~~cg~~~e~~~~ 158 (648)
T PRK12267 83 WKKLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKC---PDCGREVELVKE 158 (648)
T ss_pred HHHcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcC---CCCCCcCeEEec
Confidence 4689995 799999998 9999999999999999999999999999887654333 11 111 1234443211
Q ss_pred ----------------ccccCCCccc-----------cccccc--CCCCcccC-CCCCCCCC--------CchhhHHHHH
Q 014658 73 ----------------SRKRNPADFA-----------LWKAAK--AGEPSWDS-PWGPGRPG--------WHIECSAMSA 114 (421)
Q Consensus 73 ----------------~~K~~p~DF~-----------LWk~~~--~~~~~w~s-pwg~grPg--------Whiecsam~~ 114 (421)
-.+++| +|. -|-... +-.++.+. +||...|+ |.-....+..
T Consensus 159 ~~~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s 237 (648)
T PRK12267 159 ESYFFRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYIT 237 (648)
T ss_pred ceEEEEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHH
Confidence 123343 221 133211 11133443 79988886 5432222221
Q ss_pred hhcC------------CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHH
Q 014658 115 HYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182 (421)
Q Consensus 115 ~~lg------------~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~ 182 (421)
. +| +|.|+|+.|+||++||..+||+++++++.++|.++++| |||+++|+|||||+||+|+|.++++
T Consensus 238 ~-~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~h-g~l~~eg~KMSKS~GN~i~p~d~l~ 315 (648)
T PRK12267 238 A-LGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAH-GWWLMKDGKMSKSKGNVVDPEELVD 315 (648)
T ss_pred H-cCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEec-ceEEECCceecccCCcccCHHHHHH
Confidence 1 11 26799999999999999999999999887788888665 9999999999999999999999999
Q ss_pred hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHHH-HHHhcCCccc-CCCCCCCChHHHHHHHHHH
Q 014658 183 RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQD-CEVALSPFQE-HGKTARINPAAEDCINKLR 254 (421)
Q Consensus 183 ~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~~-~~~~~~~~~~-~~~~~~~d~~l~~~l~~~~ 254 (421)
+||+|++||||++. ++.+|.+||++.+....| .++|+++++.. +........+ .......|+++++.++++.
T Consensus 316 ~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~ 395 (648)
T PRK12267 316 RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETL 395 (648)
T ss_pred HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHH
Confidence 99999999999985 899999999999987654 35666555432 2222222111 1112346789999999999
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 255 DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 255 ~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
+.+.++| ++|++++|++. ++++++.+|.|++..+||.
T Consensus 396 ~~v~~~~-e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 396 KNYEELM-EELQFSRALEE-VWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHhCCChh
Confidence 9999999 89999999999 9999999999999999996
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=333.68 Aligned_cols=327 Identities=18% Similarity=0.152 Sum_probs=219.8
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCC------------------cccc-----
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN------------------YGRL----- 55 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~------------------Yg~l----- 55 (421)
|++|||. ++.++|+|+ |++.|++++++|.++|++|...+.||||+.+-.. ||..
T Consensus 81 ~~~l~i~-~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg 159 (673)
T PRK00133 81 FAGFGIS-FDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCG 159 (673)
T ss_pred HHHhCCC-CCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcc
Confidence 4679997 688999984 9999999999999999999999999999876532 2321
Q ss_pred ---ccccchh---hhCCCCccccccccCCCcccc----------------cccc---------cCCC----CcccCCC-C
Q 014658 56 ---SGQRLEN---NRAGERVAVDSRKRNPADFAL----------------WKAA---------KAGE----PSWDSPW-G 99 (421)
Q Consensus 56 ---s~~~~~~---~~~g~~v~~~~~K~~p~DF~L----------------Wk~~---------~~~~----~~w~spw-g 99 (421)
.+.++.+ ...|++++...++.- =|-| |... +.|. ++.+..| |
T Consensus 160 ~~~~~~~l~~~~~~~~g~~~e~~~~~~~--f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~G 237 (673)
T PRK00133 160 ATYSPTELINPKSAISGATPVLKESEHF--FFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFG 237 (673)
T ss_pred ccCChHhhcCCccccCCCcceEEecceE--EEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccc
Confidence 1111111 113444432211110 0111 2110 0111 2335668 8
Q ss_pred CCCCC--------CchhhHHHHH---------------hhcC---CCceEEeecccCcCcchHHHHHHHHhccCCCCCcE
Q 014658 100 PGRPG--------WHIECSAMSA---------------HYLS---SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 153 (421)
Q Consensus 100 ~grPg--------Whiecsam~~---------------~~lg---~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~ 153 (421)
...|| |--....++. +++. .+-.+|++|+||++||.++|||++++++.++|.++
T Consensus 238 ipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v 317 (673)
T PRK00133 238 FEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNV 317 (673)
T ss_pred eECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEE
Confidence 77775 4322211111 1221 12249999999999999999999999877777778
Q ss_pred EEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCC-CCcccCHHHHHHHHHH--HHHHHHHHHHHHHh
Q 014658 154 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA--VFYIYQTLQDCEVA 229 (421)
Q Consensus 154 ~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~-~d~~fs~e~l~~~~~~--l~~l~~~l~~~~~~ 229 (421)
++| |||+.+|+|||||+||+|+|.|++++||+|++||||++. +.. +|.+|+++.+....+. +.+++|.+.++..+
T Consensus 318 ~~h-g~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~ 396 (673)
T PRK00133 318 FAH-GFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGF 396 (673)
T ss_pred eee-ccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 999999999999999999999999999999999999986 777 8999999998765432 33444444333322
Q ss_pred cCCcccCC-CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHH
Q 014658 230 LSPFQEHG-KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRK 307 (421)
Q Consensus 230 ~~~~~~~~-~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~ 307 (421)
+.....+. .....+.+++..++++...+.++| ++|+++.|++. ++++++.+|+|++..+||.... ........++.
T Consensus 397 ~~k~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~ 474 (673)
T PRK00133 397 INKRFDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALRE-IMALADFANKYVDDNEPWKLAKQDGERLQAVCSV 474 (673)
T ss_pred HHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHH
Confidence 21111111 123468899999999999999999 89999999999 9999999999999999995221 11122334445
Q ss_pred HHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 308 IENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 308 ~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
++..++.++.+|. |+|. .++++++++
T Consensus 475 ~~~~l~~l~~lL~Pf~P~-~ae~i~~~L 501 (673)
T PRK00133 475 GLNLFRALAIYLKPVLPE-LAERAEAFL 501 (673)
T ss_pred HHHHHHHHHHHhhChhch-HHHHHHHHh
Confidence 5555555555555 3443 344444433
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=331.73 Aligned_cols=330 Identities=12% Similarity=0.061 Sum_probs=222.0
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--ccccc-----------------
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSGQR----------------- 59 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls~~~----------------- 59 (421)
+++|||. .|.+.|.|+ |...+..++++|.++|++|.....++||+.+-..|-. +.+.+
T Consensus 97 ~~~l~i~-~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~ 175 (801)
T PLN02610 97 YDWFDIS-FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEK 175 (801)
T ss_pred HHHcCCc-cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhh
Confidence 3578887 688988875 9999999999999999999999999999876432111 11110
Q ss_pred ------chhh------hCCCCcccccc------------------ccCC------Ccc---c-cccccc--CCCCcccCC
Q 014658 60 ------LENN------RAGERVAVDSR------------------KRNP------ADF---A-LWKAAK--AGEPSWDSP 97 (421)
Q Consensus 60 ------~~~~------~~g~~v~~~~~------------------K~~p------~DF---~-LWk~~~--~~~~~w~sp 97 (421)
..++ ..|.+++...+ +.++ ... + =|-... +-.++.+.+
T Consensus 176 Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~ 255 (801)
T PLN02610 176 CGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLK 255 (801)
T ss_pred ccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecC
Confidence 0111 12444332111 1111 000 0 022211 111345688
Q ss_pred CCCCCCC----------CchhhHHHHH----------hhcCCCce---EEeecccCcCcchHHHHHHHHhccCC--CCCc
Q 014658 98 WGPGRPG----------WHIECSAMSA----------HYLSSKFD---IHGGGIDLIFPHHENEIAQSCAACQD--SNVS 152 (421)
Q Consensus 98 wg~grPg----------Whiecsam~~----------~~lg~~~D---ih~gG~Dli~pH~~~~~a~~~a~~~~--~~~~ 152 (421)
||.-.|. |.-....++. +++..+-| +|++||||++||+++|||+++|++.+ +|.+
T Consensus 256 WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~ 335 (801)
T PLN02610 256 WGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKT 335 (801)
T ss_pred CcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCCE
Confidence 9987772 5432222221 23432335 89999999999999999999999865 5566
Q ss_pred EEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----HHHHHHHHHH
Q 014658 153 YWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTLQD 225 (421)
Q Consensus 153 ~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~ 225 (421)
+++ ||||+++|+|||||+||+|+|.++++. ||+|++||||++. +..+|.+||++.+.+..|. ++||.+|+..
T Consensus 336 i~~-~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~ 414 (801)
T PLN02610 336 ISV-TEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLS 414 (801)
T ss_pred EEe-ccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 755 599999999999999999999999996 9999999999995 8999999999999988653 5666666433
Q ss_pred HHH-----hcCCcccCC---CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-
Q 014658 226 CEV-----ALSPFQEHG---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ- 296 (421)
Q Consensus 226 ~~~-----~~~~~~~~~---~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~- 296 (421)
+.. ++.+..+.. .....|.++++.+.++.+.+.++| ++|+++.|++. ++++++.+|+||+..+||....
T Consensus 415 ~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L~k~ 492 (801)
T PLN02610 415 FIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKT-AMSISSEGNAYLQESQFWKLYKE 492 (801)
T ss_pred HHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhhCC
Confidence 222 122211110 112346889999999999999999 99999999999 9999999999999999996221
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 297 QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 297 ~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
..+....+++.+++.++.++.+|- |+|. .+.+++++++
T Consensus 493 d~~~l~~vl~~~le~lr~la~LL~PfmP~-~aeeI~~~Lg 531 (801)
T PLN02610 493 DKPSCAIVVKTSVGLVYLLACLLEPFMPS-FSKEVLKQLN 531 (801)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHhC
Confidence 111222334444444444444444 3454 4555555543
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=312.46 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=163.8
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccc--
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRK-- 75 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K-- 75 (421)
|++|||..+ ...+...+|++.|++++++|.++|++|+..+.||++.+.|.+|++|+.+.++.+..+. +..+..|
T Consensus 92 l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~-~~p~~~~~~ 170 (312)
T cd00668 92 FRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK-IVPEHVKNR 170 (312)
T ss_pred HHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC-cCChHHHHH
Confidence 467899865 2344556799999999999999999999999999999999999999987777666554 3223344
Q ss_pred -----cCCCcccccccccCCCCcccCCCCCCCCCCchhh----HH---HHHhhcCC--------CceEEeecccCcCcch
Q 014658 76 -----RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIEC----SA---MSAHYLSS--------KFDIHGGGIDLIFPHH 135 (421)
Q Consensus 76 -----~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiec----sa---m~~~~lg~--------~~Dih~gG~Dli~pH~ 135 (421)
+++.||+|++ ++|||.++|||||+| +. ++..+++. |.|||++|+|++||||
T Consensus 171 ~~~~l~~~~d~~isR---------~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~ 241 (312)
T cd00668 171 MEAWLESLLDWAISR---------QRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWA 241 (312)
T ss_pred HHHHHhCCCCeEEec---------cCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHH
Confidence 3777999865 579999999999999 53 44444443 7999999999999999
Q ss_pred HHHHHHHHhccCC-CCCcEEEeeeeeeeCC-cccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCccc
Q 014658 136 ENEIAQSCAACQD-SNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 204 (421)
Q Consensus 136 ~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G-~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~f 204 (421)
++++|+++++++. ++.++|+| |+++.+| +|||||+||+|+|.|++++||+|++||||++. ++++|.+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 242 NFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999999999886 89999988 9999877 99999999999999999999999999999986 69999886
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=317.94 Aligned_cols=288 Identities=17% Similarity=0.116 Sum_probs=204.4
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--ccccc-----------------
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSGQR----------------- 59 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls~~~----------------- 59 (421)
|++|||. ++.++|+++ |++.|++++++|.++|++|+.++.||||+.+-..+.. +.+.+
T Consensus 78 l~~LgI~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg 156 (530)
T TIGR00398 78 WKWLNIS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCG 156 (530)
T ss_pred HHHhCCC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhcc
Confidence 4689997 789999888 9999999999999999999999999999875432111 11100
Q ss_pred --c--hhh------hCCCCccccc------------------cccCCCcccccccc---------cCCC----CcccCC-
Q 014658 60 --L--ENN------RAGERVAVDS------------------RKRNPADFALWKAA---------KAGE----PSWDSP- 97 (421)
Q Consensus 60 --~--~~~------~~g~~v~~~~------------------~K~~p~DF~LWk~~---------~~~~----~~w~sp- 97 (421)
+ .++ ..|.+++... .+.+| ++..|... ..+. ++....
T Consensus 157 ~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~ 235 (530)
T TIGR00398 157 RHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVY 235 (530)
T ss_pred ccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCC
Confidence 0 011 1244443211 12222 12222110 0111 233455
Q ss_pred CCCCCCCCc--------hhhHHHHHh--h-cC--------CCce-----EEeecccCcCcchHHHHHHHHhccCCCCCcE
Q 014658 98 WGPGRPGWH--------IECSAMSAH--Y-LS--------SKFD-----IHGGGIDLIFPHHENEIAQSCAACQDSNVSY 153 (421)
Q Consensus 98 wg~grPgWh--------iecsam~~~--~-lg--------~~~D-----ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~ 153 (421)
||.-.|+|. -.......- + .| +|.| +|++|+||++||+.+|||+++|++.++|.++
T Consensus 236 WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~ 315 (530)
T TIGR00398 236 WGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV 315 (530)
T ss_pred CCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE
Confidence 998888762 100111110 0 01 2455 9999999999999999999999976677777
Q ss_pred EEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHh-
Q 014658 154 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVA- 229 (421)
Q Consensus 154 ~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~--~l~~l~~~l~~~~~~- 229 (421)
++||||+.+|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+....| .+..++|.+.++...
T Consensus 316 -~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~ 394 (530)
T TIGR00398 316 -FSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFI 394 (530)
T ss_pred -EeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555999999999999999999999999999999999999985 789999999999988753 234444444333222
Q ss_pred ---cCCccc-CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 230 ---LSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 230 ---~~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
.....+ .......|.+++..+.++...+.++| ++|+++.|++. +++|++.+|.|++..+||.
T Consensus 395 ~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~ 460 (530)
T TIGR00398 395 KKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALRE-IMKLADRGNKYIDENKPWE 460 (530)
T ss_pred HHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHhcCCChh
Confidence 111111 11123467899999999999999999 99999999999 9999999999999999996
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=283.45 Aligned_cols=101 Identities=63% Similarity=1.113 Sum_probs=99.3
Q ss_pred CchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhc
Q 014658 105 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERY 184 (421)
Q Consensus 105 Whiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~y 184 (421)
||||||||+.++||.++|||+||+||+||||+|++||+.|++++||+++|+|.|+|.++|+|||||+||+|+|.|++++|
T Consensus 113 Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~ 192 (213)
T cd00672 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKY 192 (213)
T ss_pred hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhcCCCCCcccC
Q 014658 185 HPLALRHFLISAHYRSPLNYS 205 (421)
Q Consensus 185 g~D~lR~~ll~~~~~~d~~fs 205 (421)
|+|++|||+++.+|+++++|+
T Consensus 193 ~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 193 DPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred CHHHHHHHHHhCCcCCCCCCC
Confidence 999999999999999999996
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=305.22 Aligned_cols=316 Identities=15% Similarity=0.106 Sum_probs=209.5
Q ss_pred CCCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC----C--------------ccccc----
Q 014658 1 MADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----N--------------YGRLS---- 56 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t--~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~----~--------------Yg~ls---- 56 (421)
|++|||. ++.++|+| +|++.+++++++|.++|++|..++.||||+.+-. . ||...
T Consensus 83 ~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg 161 (556)
T PRK12268 83 FKKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCG 161 (556)
T ss_pred HHHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcc
Confidence 4689995 79999999 8999999999999999999999999999986542 1 23210
Q ss_pred ----cccchh---hhCCCCcccccc------------------cc---CCCc----cccccccc--CCCCcccCCCCCCC
Q 014658 57 ----GQRLEN---NRAGERVAVDSR------------------KR---NPAD----FALWKAAK--AGEPSWDSPWGPGR 102 (421)
Q Consensus 57 ----~~~~~~---~~~g~~v~~~~~------------------K~---~p~D----F~LWk~~~--~~~~~w~spwg~gr 102 (421)
..++.+ ...|+.++.... ++ -|.. +-=|-... +--++....||...
T Consensus 162 ~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipi 241 (556)
T PRK12268 162 ALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPV 241 (556)
T ss_pred ccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeC
Confidence 000000 012232221110 00 0000 00011100 00122345588777
Q ss_pred C--C--------CchhhHH-------HH---------Hhhc--CCCceEEeecccCcCcchHHHHHHHHhcc--CCCCCc
Q 014658 103 P--G--------WHIECSA-------MS---------AHYL--SSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVS 152 (421)
Q Consensus 103 P--g--------Whiecsa-------m~---------~~~l--g~~~Dih~gG~Dli~pH~~~~~a~~~a~~--~~~~~~ 152 (421)
| + |--.... .. ..++ ..+.++|+.|+|+++||..++|+++++.+ .+.|.+
T Consensus 242 P~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~ 321 (556)
T PRK12268 242 PWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDE 321 (556)
T ss_pred CCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCE
Confidence 7 2 2110101 11 1122 22567999999999999999999999987 444556
Q ss_pred EEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHHH-
Q 014658 153 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQD- 225 (421)
Q Consensus 153 ~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~~- 225 (421)
+ ++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..+|++|+++.+....+ .+.|+.+++..
T Consensus 322 v-~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~ 400 (556)
T PRK12268 322 I-VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSF 400 (556)
T ss_pred e-eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHH
Confidence 6 566999999999999999999999999999999999999986 788999999999876432 23444443322
Q ss_pred HHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHH
Q 014658 226 CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIES 304 (421)
Q Consensus 226 ~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~ 304 (421)
+................|+++++.++.+...+.++| ++|+++.|++. +++|++.+|+|++..+||.... ........
T Consensus 401 ~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~ 478 (556)
T PRK12268 401 IEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATV 478 (556)
T ss_pred HHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHcCCChhhhcCCHHHHHHH
Confidence 222111111111224568999999999999999999 99999999999 9999999999999999995211 11112233
Q ss_pred HHHHHHHHHHHHhHhc
Q 014658 305 LRKIENEVKEVLRILG 320 (421)
Q Consensus 305 l~~~~~~l~~~l~ilG 320 (421)
++.++.+++.++.+|.
T Consensus 479 l~~~~~~l~~~~~lL~ 494 (556)
T PRK12268 479 LYTALNLVRLLAVLLY 494 (556)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444455555555555
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=283.76 Aligned_cols=201 Identities=17% Similarity=0.137 Sum_probs=162.0
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|.|+|++|+||+|||+.||++++.|+++ .+|++.|+|||||+.+|+|||||+||||+|.+++++||+|++||||+++
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 59999999999999999999999988876 4677788999999999999999999999999999999999999999996
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHH-HHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL-TGAF 275 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al-~~~l 275 (421)
++++|++|+++.+.++.+.+.+++|.+.++....... ........|++++..++.+...+.++| ++|+++.|+ .. +
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~-~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~-l 728 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNLE-TGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYA-L 728 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHH-H
Confidence 9999999999999999999999999887654432210 011123467899999999999999999 899999999 77 9
Q ss_pred HHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 276 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 276 ~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
+++++.+|.|+...++ . .. ..+..++..++.+|. |+|- ..+++++.+
T Consensus 729 ~~~~~~~n~Yl~~~~~----~----~~---~~l~~~l~~~~~LLaP~~P~-~aEeiw~~L 776 (938)
T TIGR00395 729 FDLQADVDWYRRRGGV----N----HK---DVLARYLETWIKLLAPFAPH-FAEEMWEEV 776 (938)
T ss_pred HHHHHHHHHHHHhCcc----h----HH---HHHHHHHHHHHHHhcCcccH-HHHHHHHHc
Confidence 9999999999875321 0 11 124456666666666 3444 455555555
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=284.66 Aligned_cols=236 Identities=21% Similarity=0.259 Sum_probs=179.2
Q ss_pred cc-cCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccc
Q 014658 93 SW-DSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMS 168 (421)
Q Consensus 93 ~w-~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMS 168 (421)
.| +|.+ .....||.-+. .....++ |.|+|++|+||+|||+.++++++.+++++ ||.++++| |||+. +|+|||
T Consensus 452 tWFdS~l~~~s~~g~p~~~-~~~~~~~--P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMS 527 (861)
T TIGR00422 452 TWFSSSLWPFSTLGWPDET-KDLKKFY--PTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIH-GLVRDEQGRKMS 527 (861)
T ss_pred ceeccchHHHHHhCCCCCh-HHHhhcC--CcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEe-eEEECCCCCCCC
Confidence 35 3433 34445675433 1222333 89999999999999999999999999875 77999887 99996 999999
Q ss_pred cccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--c--CCCCCCCC
Q 014658 169 KSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ--E--HGKTARIN 243 (421)
Q Consensus 169 KSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~--~--~~~~~~~d 243 (421)
||+||+|+|.+++++||+|++||||++. +.++|++|+++.+....+.+.+|+|..+++...+.... . .......|
T Consensus 528 KS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D 607 (861)
T TIGR00422 528 KSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLAD 607 (861)
T ss_pred cCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHH
Confidence 9999999999999999999999999986 56999999999999888888899997665543332211 0 01123467
Q ss_pred hHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-
Q 014658 244 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG- 320 (421)
Q Consensus 244 ~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG- 320 (421)
+|++..++.+...+.++| ++|+++.|++. +++|+ ..+|.|++..+||............+.++..++..++.+|.
T Consensus 608 ~wil~~l~~~~~~v~~~~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~lL~P 685 (861)
T TIGR00422 608 RWILSKLNRTIKEVRKAL-DKYRFAEAAKA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHP 685 (861)
T ss_pred HHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999 99999999999 99997 78999999999984211111223344555666667777777
Q ss_pred cCCCCChHHHHHHHH
Q 014658 321 LLPPGAYSEVLQQLK 335 (421)
Q Consensus 321 i~~~~~~~~~~~~~~ 335 (421)
|+|- .++++++.+.
T Consensus 686 f~P~-itEelw~~L~ 699 (861)
T TIGR00422 686 FMPF-ITEEIWQHFK 699 (861)
T ss_pred hhhH-HHHHHHHhCc
Confidence 3444 4555655553
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=260.88 Aligned_cols=200 Identities=22% Similarity=0.169 Sum_probs=147.6
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc----------cccc--cchhhhCC
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR----------LSGQ--RLENNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~----------ls~~--~~~~~~~g 66 (421)
|++|||. ++.+++.|+ |++.+.+++++|.++|++|+....++||+.+-..+.. |+.- .+.+....
T Consensus 79 l~~LgI~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~ 157 (319)
T cd00814 79 FKWLNIS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEK 157 (319)
T ss_pred HHHcCCc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHh
Confidence 4689996 799999988 9999999999999999999987555555544322211 1110 00000000
Q ss_pred CC---c------c----cccccc---CCCcccccccccCCCC-----cc-cCCCC----CCCCCCchhhHHHHHhhcCCC
Q 014658 67 ER---V------A----VDSRKR---NPADFALWKAAKAGEP-----SW-DSPWG----PGRPGWHIECSAMSAHYLSSK 120 (421)
Q Consensus 67 ~~---v------~----~~~~K~---~p~DF~LWk~~~~~~~-----~w-~spwg----~grPgWhiecsam~~~~lg~~ 120 (421)
.. . . ++...+ -.+|++.|.-.-|+.+ .| +++|| .|+|+|+.+|+.+ -..+.+
T Consensus 158 ~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~--~~~~~~ 235 (319)
T cd00814 158 NPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWW--WKDGWP 235 (319)
T ss_pred CCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhh--hhcCCC
Confidence 00 0 0 111122 3456767876555554 25 79888 7899999888622 234668
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCC
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR 199 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~ 199 (421)
.+||++|+|+++||+++|||++++++.+++. .+++|||++++|+|||||+||+|+|.|+++.||+|++|||+++. +..
T Consensus 236 ~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~-~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~ 314 (319)
T cd00814 236 ELVHFIGKDIIRFHAIYWPAMLLGAGLPLPT-RIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEG 314 (319)
T ss_pred ceEEEEeechhhhhHHHHHHHHHhCCCCCCc-EeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCC
Confidence 9999999999999999999999998754454 55777999999999999999999999999999999999999995 888
Q ss_pred CCccc
Q 014658 200 SPLNY 204 (421)
Q Consensus 200 ~d~~f 204 (421)
+|.+|
T Consensus 315 ~d~~f 319 (319)
T cd00814 315 KDSDF 319 (319)
T ss_pred CCCCC
Confidence 99887
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=268.73 Aligned_cols=245 Identities=18% Similarity=0.217 Sum_probs=195.6
Q ss_pred cccccccCCCCcccCC--CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeee
Q 014658 82 ALWKAAKAGEPSWDSP--WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNG 158 (421)
Q Consensus 82 ~LWk~~~~~~~~w~sp--wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g 158 (421)
..|....+.-..|-|+ |...--||+-+ +....+|+ |.|+.+.|-||||||..+.+.++..+.++ ||..+++| |
T Consensus 441 ~~~~qd~DVLDTWFSS~LwPfstlgWp~~-t~~l~~fy--Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ih-G 516 (877)
T COG0525 441 EELEQDEDVLDTWFSSSLWPFSTLGWPEE-TPDLKKFY--PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIH-G 516 (877)
T ss_pred hcccCCcchhhhhhhcccccccccCCCCc-chHHHhcC--CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEe-e
Confidence 3455554444578755 88999999977 44445554 89999999999999999999999999885 99999887 9
Q ss_pred eee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q 014658 159 HVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH 236 (421)
Q Consensus 159 ~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~ 236 (421)
+|. -+|+|||||+||||+|.|++++||+|++||++.+. +.++|++|+++.++...|.+.++||..+++...+......
T Consensus 517 LVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~ 596 (877)
T COG0525 517 LVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPD 596 (877)
T ss_pred eEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcc
Confidence 998 58999999999999999999999999999999996 9999999999999999999999999988776544332211
Q ss_pred ----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH--HHHHHHhhhcccCchhhhhhhHHHHHHHHH
Q 014658 237 ----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQQQLSLIESLRKIEN 310 (421)
Q Consensus 237 ----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~--~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~ 310 (421)
......|+|++.+++++...++++| ++|+|..|.+. |++|+. .|+.|+.-.+|-.-.. .........++..
T Consensus 597 ~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~-ly~F~W~~fcD~YlEl~K~~l~~~-~~~~~~a~~tL~~ 673 (877)
T COG0525 597 DLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA-LYEFIWNDFCDWYLELAKPRLYGG-EEEKRAARATLYY 673 (877)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHhHHHHHHHHHHHhhhhhcCc-HHHHHHHHHHHHH
Confidence 1113678999999999999999999 99999999999 999995 7899999988732111 1222345566677
Q ss_pred HHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 311 EVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 311 ~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
++..++++|- |+|- -++++.+.+
T Consensus 674 vl~~~lrLLhPfmPf-iTEei~q~l 697 (877)
T COG0525 674 VLDTLLRLLHPFMPF-ITEEIWQKL 697 (877)
T ss_pred HHHHHHHHhCCCCcc-chHHHHHhc
Confidence 8888888888 4553 344555544
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=275.69 Aligned_cols=198 Identities=19% Similarity=0.201 Sum_probs=158.5
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|+|+|++|+||++||+.+++.++.++++. ||++-+++||||+.+|+|||||+||+|+|.+++++||+|++||||+++
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~ 608 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSA 608 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCC
Confidence 599999999999999999999999998874 675555778999999999999999999999999999999999999985
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 276 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~ 276 (421)
++++|++|+++.+..+.+.+.++++.+.++..... .......|+|+++.++.+.+.+.++| ++|+++.|+.. ++
T Consensus 609 ~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~----~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~-i~ 682 (897)
T PRK12300 609 ELLQDADWREKEVESVRRQLERFYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQE-AF 682 (897)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC----ccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HH
Confidence 99999999999999998888888887765432211 11123468899999999999999999 89999999988 64
Q ss_pred -HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 277 -DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 277 -~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.+.+.+|.|++..+| .....+...+..++.+|. |+|- ..+++++.+
T Consensus 683 ~~l~~~~n~Yi~~~k~-----------~~~~~l~~~l~~~~~lLaPf~P~-~aEeiw~~L 730 (897)
T PRK12300 683 YELLNDLRWYLRRVGE-----------ANNKVLREVLEIWIRLLAPFTPH-LAEELWHKL 730 (897)
T ss_pred HHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHc
Confidence 777899999987664 112234455555566666 3343 345555544
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=274.57 Aligned_cols=215 Identities=22% Similarity=0.211 Sum_probs=168.6
Q ss_pred cCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHH---------hcC
Q 014658 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------RYH 185 (421)
Q Consensus 117 lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~---------~yg 185 (421)
+.+|.|+|+.|+||+|+|+...+.++.++.+. ||+++|+| ||++. +|+|||||+||||+|.++++ +||
T Consensus 561 ~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yG 639 (974)
T PLN02843 561 LSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYG 639 (974)
T ss_pred cCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccC
Confidence 35799999999999998888888888888876 88999998 88875 89999999999999999999 799
Q ss_pred chHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-----CCCCCCChHHHHHHHHHHHHHHHH
Q 014658 186 PLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHAR 260 (421)
Q Consensus 186 ~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a 260 (421)
+|++|||+++.+|++|++|+.+.+.++.+.+.+|+|+++++.+.+..+... ......|+|++++++.+.+++.++
T Consensus 640 aD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~a 719 (974)
T PLN02843 640 ADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEES 719 (974)
T ss_pred hHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888899999988877665543211 111246899999999999999999
Q ss_pred HHhccChHHHHHHHHHHH--HHHHHHHHhhhcccC--chhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 261 MSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 261 ~~dd~~~~~Al~~~l~~~--~~~~N~yi~~~~pw~--~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
| ++|+|++|++. |++| ...+|.|++..+||. .......+...-..+...+..++.+|. |+|- .++++++.+.
T Consensus 720 y-e~y~f~~A~~~-i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf-~aEEiw~~L~ 796 (974)
T PLN02843 720 Y-DNYQFFKIFQI-LQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPH-LAEDAWQNLP 796 (974)
T ss_pred H-HccCHHHHHHH-HHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcc
Confidence 9 99999999999 9988 569999999999974 111111111111122333444455555 4454 4566666553
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=272.16 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=170.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+|||....++++.++.++ ||.++++| |+|+ .+|+|||||+||||+|.|++++||+|++|||+++.
T Consensus 472 ~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~ 550 (874)
T PRK05729 472 YPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAAL 550 (874)
T ss_pred CCcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhC
Confidence 489999999999999999999999888776 77999888 9998 69999999999999999999999999999999986
Q ss_pred -CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHH
Q 014658 197 -HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 270 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~A 270 (421)
++++|++|+++.+....+.+++|||..+++...+...... ......|+|++.+++.+...+.++| ++|+++.|
T Consensus 551 ~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a 629 (874)
T PRK05729 551 ASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEA 629 (874)
T ss_pred CCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHH
Confidence 8999999999999988888889999776654332222111 1123457899999999999999999 89999999
Q ss_pred HHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 271 LTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 271 l~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
++. |++|+ ..+|.|++..+||.. .. .+...+..+..++..++.+|. |+|- .++++++.+.
T Consensus 630 ~~~-l~~f~~~~~~~~Yle~~k~~l~--~~-~~~~~~~~l~~~l~~~~~lL~Pf~Pf-itEelw~~l~ 692 (874)
T PRK05729 630 ARA-LYEFIWNEFCDWYLELAKPVLQ--EA-AKRATRATLAYVLEQILRLLHPFMPF-ITEELWQKLA 692 (874)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhh--hh-HHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhcc
Confidence 999 99998 589999999999842 11 123344556677777777777 4554 4666666654
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=272.30 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=160.4
Q ss_pred CCCceEEeecccCcCc--chHHHHHHHHhccCCCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHh
Q 014658 118 SSKFDIHGGGIDLIFP--HHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194 (421)
Q Consensus 118 g~~~Dih~gG~Dli~p--H~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll 194 (421)
.+|.|+|++|+||+|+ |+.+++++.+ .+..||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||++
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll 620 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTH-GFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVA 620 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEEe-eeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHH
Confidence 4699999999999985 5666666654 333588888666 99996 99999999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChH
Q 014658 195 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTS 268 (421)
Q Consensus 195 ~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~ 268 (421)
++++++|++||++.+.+..+.+.+|+|+++++.+.+..+... ......|++++.+++++.+.+.++| ++|+|+
T Consensus 621 ~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~-e~~~f~ 699 (912)
T PRK05743 621 STDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAY-ENYDFH 699 (912)
T ss_pred hcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 989999999999999988777888899888776655432210 0123468999999999999999999 999999
Q ss_pred HHHHHHHHHHH--HHHHHHHhhhccc--CchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 269 HILTGAFQDAL--KFINSSLNMLKKK--QPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 269 ~Al~~~l~~~~--~~~N~yi~~~~pw--~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
+|++. |++|+ ..+|.|++..+|| ........+......+...+..++.+|. |+|- ..+++++.+
T Consensus 700 ~a~~~-l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~-~aEelw~~l 768 (912)
T PRK05743 700 KVYQK-LHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSF-TAEEIWQYL 768 (912)
T ss_pred HHHHH-HHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHhc
Confidence 99999 99999 4679999999985 2111111111121223344444556666 3444 455666655
|
|
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=269.54 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=168.5
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+|++++|..++++++.++.+. ||.++++| |+|+ .+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 485 ~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~ 563 (800)
T PRK13208 485 FPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMIS-GMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASA 563 (800)
T ss_pred CCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEe-eEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcC
Confidence 489999999999999999999999998875 78999765 9998 59999999999999999999999999999999977
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF--QEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~--~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
++++|++||++.+..+.+.+.+++|.++.+....... .........|++++..++.+.+++.++| ++|+++.|++.
T Consensus 564 ~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~- 641 (800)
T PRK13208 564 RLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEE- 641 (800)
T ss_pred CCCCCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-
Confidence 9999999999999988888888998876654221100 0001123457899999999999999999 89999999999
Q ss_pred HHHHHH--HHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 275 FQDALK--FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 275 l~~~~~--~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+++|+. .+|.|++..+||.-.. ....+...+..+...++.++.+|. |+|- ..+++++++.
T Consensus 642 i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~-iaEelw~~L~ 705 (800)
T PRK13208 642 IESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPF-ITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHhCC
Confidence 999996 5999999999873111 111123344455666777777777 4554 4666666664
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=269.41 Aligned_cols=215 Identities=17% Similarity=0.152 Sum_probs=165.8
Q ss_pred cCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHh
Q 014658 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194 (421)
Q Consensus 117 lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll 194 (421)
+.+|.|+|+.|+||+|+|.-....++.++.+. ||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||++
T Consensus 580 ~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 580 LKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred cCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 45799999999999985555566777777665 78899887 99986 99999999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChH
Q 014658 195 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTS 268 (421)
Q Consensus 195 ~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~ 268 (421)
++++++|++||++.|.++.+.+.+|+|+++++.+.+..+... ......|++++..++++.+.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 989999999999999888778888999887766655443221 0113457899999999999999999 999999
Q ss_pred HHHHHHHHHHH-H-HHHHHHhhhcccC--chhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 269 HILTGAFQDAL-K-FINSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 269 ~Al~~~l~~~~-~-~~N~yi~~~~pw~--~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+|++. +++|+ . .+|.|++..+||. .......+......+...+..++.+|. |+|- ..+++++++.
T Consensus 738 ~a~~~-l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~-~aEeiw~~L~ 807 (961)
T PRK13804 738 RIYKA-LVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF-TAEEAWLYRY 807 (961)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhcc
Confidence 99999 99999 3 5799999999863 111111122222233344555566666 4554 5666666665
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=273.00 Aligned_cols=234 Identities=15% Similarity=0.182 Sum_probs=170.6
Q ss_pred cCC-CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCccccccc
Q 014658 95 DSP-WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSL 171 (421)
Q Consensus 95 ~sp-wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSl 171 (421)
+|. |....-||.-+ .....+++ |.|+|++|+||++||....++++..+.+. ||.++++| |||+. +|+|||||+
T Consensus 468 dS~l~y~s~~g~p~~-~~~~~~~~--P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~h-G~v~d~~G~KMSKSk 543 (1052)
T PRK14900 468 SSGLWPFSTMGWPEQ-TDTLRTFY--PTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLH-PMVRDEKGQKMSKTK 543 (1052)
T ss_pred cCChHHHHHHcCCCc-hHHHHhhC--CchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEec-ccEECCCCCCccCCC
Confidence 455 54555566422 22223344 89999999999998877777777666665 77889776 99997 999999999
Q ss_pred CCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-C-----CCCCCCCh
Q 014658 172 GNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-H-----GKTARINP 244 (421)
Q Consensus 172 GN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~-~-----~~~~~~d~ 244 (421)
||+|+|.+++++||+|++||||++. ++++|++||++.+....+.+.+++|..+.+...+..+.. . ......|+
T Consensus 544 GNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~ 623 (1052)
T PRK14900 544 GNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADR 623 (1052)
T ss_pred CCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHH
Confidence 9999999999999999999999985 899999999999987777777888865544322222211 0 11234678
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-c
Q 014658 245 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-L 321 (421)
Q Consensus 245 ~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i 321 (421)
|+++.++.++.++.++| ++|+|+.|++. +++|+ ..+|.||+..+|+...............+...|..++.+|. |
T Consensus 624 wils~l~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~~~L~~~L~~l~~LLaPf 701 (1052)
T PRK14900 624 WILARLQRAVNETVEAL-EAFRFNDAANA-VYAFVWHELCDWYIELAKEALASEDPEARRSVQAVLVHCLQTSYRLLHPF 701 (1052)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHhhhHHHHHhccHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999 99999999999 99998 49999999988863111111112233344455555566665 3
Q ss_pred CCCCChHHHHHHHH
Q 014658 322 LPPGAYSEVLQQLK 335 (421)
Q Consensus 322 ~~~~~~~~~~~~~~ 335 (421)
+|- ..+++++.+.
T Consensus 702 mP~-~aEeiw~~L~ 714 (1052)
T PRK14900 702 MPF-ITEELWHVLR 714 (1052)
T ss_pred hHH-HHHHHHHHhc
Confidence 454 4566666653
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=272.85 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=167.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|+.|+|++|+|.....+++.++++. ||.++ ++||||+. +|+|||||+||+|+|.+++++||+|++||||+++
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~V-ivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s 644 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNL-ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINS 644 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCccee-EEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhC
Confidence 589999999999999988888888888885 66666 55599997 8999999999999999999999999999999987
Q ss_pred CC--CCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCC--------cccCC------CCCCCChHHHHHHHHHHHHHHH
Q 014658 197 HY--RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSP--------FQEHG------KTARINPAAEDCINKLRDEFHA 259 (421)
Q Consensus 197 ~~--~~d~~fs~e~l~~~~-~~l~~l~~~l~~~~~~~~~--------~~~~~------~~~~~d~~l~~~l~~~~~~v~~ 259 (421)
++ .+|++|+++.+.+.. +.+.++||+++++..++.. +.+.. .....|+|+++.++++.+.+.+
T Consensus 645 ~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~ 724 (1159)
T PLN02882 645 PVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVRE 724 (1159)
T ss_pred CcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 65 688999999998765 4677889987766544322 11110 1134689999999999999999
Q ss_pred HHHhccChHHHHHHHHHHHHH-HHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 260 RMSDDLNTSHILTGAFQDALK-FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 260 a~~dd~~~~~Al~~~l~~~~~-~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+| ++|++++|+.. |++|+. .+|.|++..+||.-.. ..+.+...+.++.++|..++.+|. |+|- .++++++++.
T Consensus 725 ~m-e~y~f~~A~~~-I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf-~aEeI~q~L~ 800 (1159)
T PLN02882 725 EM-GAYRLYTVVPY-LVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPF-FTEVLYQNLR 800 (1159)
T ss_pred HH-HccCHHHHHHH-HHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhc
Confidence 99 99999999999 999997 6899999999984211 122234455566666777777776 3454 4666666664
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=264.98 Aligned_cols=235 Identities=17% Similarity=0.184 Sum_probs=175.6
Q ss_pred cCC-CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCccccccc
Q 014658 95 DSP-WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSL 171 (421)
Q Consensus 95 ~sp-wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSl 171 (421)
+|. |....-||.-+.......+ +|.|+|+.|+||+|||..+..+++..+.++ ||.++|+| |+++ .+|+|||||+
T Consensus 512 dS~l~p~s~lgwp~~~~~~~~~~--yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~h-g~v~~~~G~KMSKS~ 588 (958)
T PLN02943 512 SSALWPFSTLGWPDVSAEDFKKF--YPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLH-GLIRDSQGRKMSKTL 588 (958)
T ss_pred cCccchHHhcCCCccChHHHhcc--CCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEe-ccEECCCCCcccCcC
Confidence 444 5555556743222222233 499999999999998777766666666665 88999998 7776 7999999999
Q ss_pred CCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------cccC-
Q 014658 172 GNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP--------------FQEH- 236 (421)
Q Consensus 172 GN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~--------------~~~~- 236 (421)
||+|+|.+++++||+|++|||+++.++++|++|+++.+....+.+.+|+|..+++...+.. +...
T Consensus 589 GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~ 668 (958)
T PLN02943 589 GNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEE 668 (958)
T ss_pred CCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccc
Confidence 9999999999999999999999998889999999999999888888999987766543321 1100
Q ss_pred --CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchh-hhhhhHHHHHHHHHH
Q 014658 237 --GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQ-QQLSLIESLRKIENE 311 (421)
Q Consensus 237 --~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~ 311 (421)
......|+|+++.++.++.++.++| ++|+|+.|++. +++|+ ..+|.|++..+||.... ...........+...
T Consensus 669 ~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~v 746 (958)
T PLN02943 669 SLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGRE-IYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYV 746 (958)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHH-HHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHH
Confidence 0113457899999999999999999 99999999999 99995 79999999999974111 111122334445566
Q ss_pred HHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 312 VKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 312 l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+..++.+|. |+|- .++++++++.
T Consensus 747 l~~ll~LL~PfmPf-itEELwq~L~ 770 (958)
T PLN02943 747 FENILKLLHPFMPF-VTEELWQALP 770 (958)
T ss_pred HHHHHHHHhCcchh-HHHHHHHHcC
Confidence 666777777 4554 4666666663
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-28 Score=267.49 Aligned_cols=212 Identities=19% Similarity=0.226 Sum_probs=161.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|+.|+|++|+|.....+++.++++ .||+++++| |+|+. +|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 544 ~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~h-G~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~ 622 (975)
T PRK06039 544 FPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVH-GHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSS 622 (975)
T ss_pred CCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEe-eeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhC
Confidence 49999999999999988888888888877 488999777 99985 9999999999999999999999999999999997
Q ss_pred -CCCCCcccCHHH-HHHHHHHHHHHHHHHHHHHHh--cCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccC
Q 014658 197 -HYRSPLNYSVLQ-LDSASDAVFYIYQTLQDCEVA--LSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLN 266 (421)
Q Consensus 197 -~~~~d~~fs~e~-l~~~~~~l~~l~~~l~~~~~~--~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~ 266 (421)
+.++|++||++. +..+.+.+.+++|.++++..+ +..+... ......|+|++..++.+...+.++| ++|+
T Consensus 623 ~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~-e~y~ 701 (975)
T PRK06039 623 SAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEAL-DNYD 701 (975)
T ss_pred CCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccC
Confidence 569999999999 555566778888887765422 2221100 1113457899999999999999999 8999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhhh--cccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 267 TSHILTGAFQDALKFI-NSSLNML--KKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 267 ~~~Al~~~l~~~~~~~-N~yi~~~--~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
++.|++. |++|+..+ |.|++.. .||.... ...+.....++..++..++.+|. |+|- .++++++.+.
T Consensus 702 ~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf~Pf-~aEei~~~L~ 771 (975)
T PRK06039 702 ITKAARA-IRDFVDDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPFTPF-IAEEIYQNLT 771 (975)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHhcc
Confidence 9999999 99999765 7799876 4585321 11123334445566666666666 3443 4555555553
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=249.67 Aligned_cols=278 Identities=16% Similarity=0.151 Sum_probs=203.9
Q ss_pred CCCCCCCCCCcccccccc--HHHHHHHHHHHHHcCCee-eeCCcEEEeccCCCCccccccccchhhhCCCCccccccccC
Q 014658 1 MADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRN 77 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~--i~~i~~~i~~L~~~g~aY-~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~ 77 (421)
|++|||. ++.+++.|++ .+.+.++++.|.++|++| +.+|.+||++++|.++
T Consensus 190 l~~LgI~-~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~------------------------- 243 (507)
T PRK01611 190 LDRLGVH-FDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDD------------------------- 243 (507)
T ss_pred HHHcCCe-eeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCC-------------------------
Confidence 4679998 4888888864 678999999999999999 8899999998754210
Q ss_pred CCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHH---HHHHhccCCCC-CcE
Q 014658 78 PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSN-VSY 153 (421)
Q Consensus 78 p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~---a~~~a~~~~~~-~~~ 153 (421)
.|++|||. +|.+.|.++ -++||++|... ++. .|.+.|.| |+.+.. +.+.+++..+. .++
T Consensus 244 -~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d~--~i~V~g~~----q~~hf~~~~~~~~~lg~~~~~~~~ 306 (507)
T PRK01611 244 -KDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FDR--VIYVVGAD----HHGHFKRLKAALKALGYDPDALEV 306 (507)
T ss_pred -CCeEEEEC--CCCccchHH----HHHHHHHHHhh----cCE--EEEEECCC----hHHHHHHHHHHHHHcCCCcccceE
Confidence 28999998 787877766 67888888643 443 34455566 444333 44455554433 366
Q ss_pred EEe--eeeeee-CCcccccccCCccCHHHHHHh-cCc----------------hHHHHHHhhcCCCCCcccCHHHHHHHH
Q 014658 154 WMH--NGHVTN-NNEKMSKSLGNFFTIRQITER-YHP----------------LALRHFLISAHYRSPLNYSVLQLDSAS 213 (421)
Q Consensus 154 ~~h--~g~l~~-~G~KMSKSlGN~i~~~dll~~-yg~----------------D~lR~~ll~~~~~~d~~fs~e~l~~~~ 213 (421)
++| .|++.. +|+|||||+||+|+|.|++++ +|. |++||++|+.+..+|++|+++.+.+..
T Consensus 307 ~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~ 386 (507)
T PRK01611 307 LLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFE 386 (507)
T ss_pred EEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhc
Confidence 777 345543 678999999999999999999 999 999999999999999999999987654
Q ss_pred H--H------HHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Q 014658 214 D--A------VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 285 (421)
Q Consensus 214 ~--~------l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~y 285 (421)
+ . ..|+.+.++................+.+.+++..+..+.+.+.+++ ++++++.++.. +++|++.+|+|
T Consensus 387 ~~~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~y-l~~la~~f~~f 464 (507)
T PRK01611 387 GNNPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANY-LYELAGAFHSF 464 (507)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHH
Confidence 2 1 1233333332211000000001113456889999999999999999 99999999999 99999999999
Q ss_pred HhhhcccCch-h-hhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 286 LNMLKKKQPK-Q-QQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 286 i~~~~pw~~~-~-~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
++.+. .... . ....++.++.++..+|...|.+|||.+.
T Consensus 465 Y~~~~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 465 YNRVL-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HHHCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 97553 3211 1 2346788899999999999999999753
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=257.05 Aligned_cols=212 Identities=19% Similarity=0.200 Sum_probs=157.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+++|.-.....+.++.+ .||.++++| |||+. +|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~h-G~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~ 641 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITH-GFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS 641 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEec-ceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC
Confidence 48999999999999555555545555545 588889776 99985 9999999999999999999999999999999999
Q ss_pred CCCCCcccCHHHHHHHHHHHH-HHHHHHHHHH--HhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccCh
Q 014658 197 HYRSPLNYSVLQLDSASDAVF-YIYQTLQDCE--VALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNT 267 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~-~l~~~l~~~~--~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~ 267 (421)
++.+|++|+++.+....+.+. .++|.++++. ..+..+... ......|++++..++.+.+.+.++| ++|++
T Consensus 642 ~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~~ 720 (861)
T TIGR00392 642 DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYNF 720 (861)
T ss_pred CCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhccH
Confidence 999999999999988766444 4566666654 444332210 1123457889999999999999999 89999
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 268 SHILTGAFQDALKF--INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 268 ~~Al~~~l~~~~~~--~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+.|++. +++|+.. +|.|++..+| |........+ .....+...+..++.+|. |+|- .++++++.+.
T Consensus 721 ~~a~~~-l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~-~aeeiw~~L~ 790 (861)
T TIGR00392 721 HKVLRA-LQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPH-TAEEIYQNLP 790 (861)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhcc
Confidence 999999 9999875 8999998876 8522211111 223334455555566666 4554 4566666553
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=261.30 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=168.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHH--------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-------------- 182 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~-------------- 182 (421)
+|.|+|++|+||+|+|....++++.++.++ ||.++++| |+|.. +|+|||||+||||+|.++++
T Consensus 537 ~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~H-G~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~ 615 (995)
T PTZ00419 537 FPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLH-AMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEG 615 (995)
T ss_pred CCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhcc-ceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhcc
Confidence 489999999999999988888888888875 77889666 99996 99999999999999999999
Q ss_pred -----------------------hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC--
Q 014658 183 -----------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-- 236 (421)
Q Consensus 183 -----------------------~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~-- 236 (421)
+||+|++|||+++. +.++|++|+.+.+....+.+.++||.++++..++......
T Consensus 616 ~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~ 695 (995)
T PTZ00419 616 NLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPN 695 (995)
T ss_pred ccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 89999999999985 7899999999999987778889999988776554332110
Q ss_pred ---------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCc-hhhhhhhHHH
Q 014658 237 ---------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQP-KQQQLSLIES 304 (421)
Q Consensus 237 ---------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~-~~~~~~~~~~ 304 (421)
......|+|++..++.+.+.+.++| ++|+|+.|++. +++|+ ..+|.|++..+||.. ......+...
T Consensus 696 ~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~ 773 (995)
T PTZ00419 696 STLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQHA 773 (995)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHH
Confidence 0112357899999999999999999 89999999999 99974 689999999999851 1111112233
Q ss_pred HHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 305 LRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 305 l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
..++..++..++.+|. |+|- .++++++.+.
T Consensus 774 ~~~L~~vL~~~l~LL~PfmPf-itEElw~~L~ 804 (995)
T PTZ00419 774 QDVLHTVLDIGLRLLHPMMPF-ITEELYQRLP 804 (995)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-hHHHHHHhhh
Confidence 4455566677777777 4554 4666666663
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=238.14 Aligned_cols=218 Identities=22% Similarity=0.215 Sum_probs=144.7
Q ss_pred CCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--cccccch----------hhhCCC
Q 014658 2 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSGQRLE----------NNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t--~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls~~~~~----------~~~~g~ 67 (421)
++|||. +|.+.|.| +|...+.+++++|.++|++|..+..++||+++...+.. +.+.+.. -...|.
T Consensus 79 ~~~~I~-~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 79 EALNIS-YDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGR 157 (391)
T ss_dssp HHTT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSS
T ss_pred HHcCCC-CcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCC
Confidence 578997 69999987 49999999999999999999999999999887543211 2222110 011222
Q ss_pred Cc-----------------cccccccCCCcccc---------cccccC-----------------CC----CcccCCCCC
Q 014658 68 RV-----------------AVDSRKRNPADFAL---------WKAAKA-----------------GE----PSWDSPWGP 100 (421)
Q Consensus 68 ~v-----------------~~~~~K~~p~DF~L---------Wk~~~~-----------------~~----~~w~spwg~ 100 (421)
.+ ++..+ ...=|-| |-.+.+ +- ++-+.+||.
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e--~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI 235 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREE--ENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGI 235 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEE--EEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSE
T ss_pred CcccccccCCccccccccCccccc--eEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcc
Confidence 21 11111 1111222 111111 01 245678998
Q ss_pred CCCC--------CchhhHHHHH----------------hhc---CCCceEEeecccCcCcchHHHHHHHHhccCCCCCcE
Q 014658 101 GRPG--------WHIECSAMSA----------------HYL---SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 153 (421)
Q Consensus 101 grPg--------Whiecsam~~----------------~~l---g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~ 153 (421)
--|| |.-....+.. +++ +.+-.+|++|||+++||.++|||+++|++.++|.++
T Consensus 236 ~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i 315 (391)
T PF09334_consen 236 PVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRI 315 (391)
T ss_dssp EETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEE
T ss_pred eeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEE
Confidence 7775 6432222222 111 112349999999999999999999999777777777
Q ss_pred EEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----HHHHHHHH
Q 014658 154 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTL 223 (421)
Q Consensus 154 ~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l~~l~~~l 223 (421)
++| ||++++|+|||||+||+|+|.|+++.||+|++||||++. +..+|.+|+++.+.+..|. ++||.+|+
T Consensus 316 ~~~-~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 316 VVH-GFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp EEE---EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred Eee-eeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 555 999999999999999999999999999999999999995 8899999999999988763 78887764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=255.09 Aligned_cols=212 Identities=15% Similarity=0.188 Sum_probs=167.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+.+.|.|++|+|....+.++.+++++ ||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||+++.
T Consensus 672 fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvH-G~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~ 750 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICN-GLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINS 750 (1205)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEc-cEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhc
Confidence 499999999999999999999999999986 78999776 99996 9999999999999999999999999999999985
Q ss_pred -CC-CCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCCccc-------------CCCCCCCChHHHHHHHHHHHHHHHH
Q 014658 197 -HY-RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPFQE-------------HGKTARINPAAEDCINKLRDEFHAR 260 (421)
Q Consensus 197 -~~-~~d~~fs~e~l~~~~-~~l~~l~~~l~~~~~~~~~~~~-------------~~~~~~~d~~l~~~l~~~~~~v~~a 260 (421)
.. .+|++|+++.+.+.. +.+.++||..+++...+..+.. .......|+|+++.++++.+.+.++
T Consensus 751 ~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~ 830 (1205)
T PTZ00427 751 VAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTE 830 (1205)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 54 799999999997654 4578899988776654332110 0112346899999999999999999
Q ss_pred HHhccChHHHHHHHHHHHHH-HHHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 261 MSDDLNTSHILTGAFQDALK-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 261 ~~dd~~~~~Al~~~l~~~~~-~~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
| ++|++++|+.. |++|+. .+|.|++..++ |..... +.....+.++..+|..++.+|. |+|- .++++++.+.
T Consensus 831 m-e~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~~-~~~~~a~~tL~~vL~~~~~LLaPf~Pf-iaEeiyq~L~ 905 (1205)
T PTZ00427 831 M-KAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLGE-ENCLQSLCTTYRTLHLFTVLMAPFTPF-ITEYIYQQLR 905 (1205)
T ss_pred H-HccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCCc-HHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHhh
Confidence 9 99999999999 999998 77999997664 421111 1123445556666777777777 3454 4566666663
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=252.28 Aligned_cols=212 Identities=16% Similarity=0.151 Sum_probs=167.0
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHH--------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-------------- 182 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-------------- 182 (421)
+|.|+.+.|.|++|||....+.++.++++. ||.++++| |+|. .+|+|||||+||||+|.++++
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~h-G~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~ 685 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 685 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheec-ceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhcc
Confidence 499999999999999999999999988875 89999777 9998 599999999999999999999
Q ss_pred -----------------------hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccC-
Q 014658 183 -----------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP-FQEH- 236 (421)
Q Consensus 183 -----------------------~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~-~~~~- 236 (421)
+||+|++|||+++. ..++|++|+.+.+....+.+.+|||.++++...+.. +...
T Consensus 686 ~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~ 765 (1066)
T PLN02381 686 NLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPA 765 (1066)
T ss_pred ccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCccc
Confidence 79999999999985 678899999999998888899999998876544432 1110
Q ss_pred ----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHHHHHHhhhcccCchhh---hhhhHHHHHH
Q 014658 237 ----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQQ---QLSLIESLRK 307 (421)
Q Consensus 237 ----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~--~~~~N~yi~~~~pw~~~~~---~~~~~~~l~~ 307 (421)
......|+|+++.++.++..+.++| ++|+|+.|++. +++| ...+|.|++..+||..... ...+.....+
T Consensus 766 ~~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~ 843 (1066)
T PLN02381 766 TLSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDT 843 (1066)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHH
Confidence 1123468999999999999999999 89999999999 9999 4688999999999741110 0111222334
Q ss_pred HHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 308 IENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 308 ~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
+..++..++++|. |+|- .++++++.+
T Consensus 844 L~~vL~~llrLL~PfmPf-itEELw~~L 870 (1066)
T PLN02381 844 LWICLDTGLRLLHPFMPF-VTEELWQRL 870 (1066)
T ss_pred HHHHHHHHHHHHHhHhHH-HHHHHHHHh
Confidence 4455666677777 3443 355555555
|
|
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-27 Score=231.56 Aligned_cols=194 Identities=19% Similarity=0.155 Sum_probs=138.2
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHH----HHHHcCCeeeeCCcEEEeccCCCCccccc-----cccchhhhCCCCccc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMIT----QIINNDCAYVVEGDVFFAVEKSPNYGRLS-----GQRLENNRAGERVAV 71 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~----~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls-----~~~~~~~~~g~~v~~ 71 (421)
|++|||. ++..++++.|.++++++++ +|.++|++|...+.||||+....-|=.|+ ..-.+-+... .+ .
T Consensus 79 ~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~-~~-~ 155 (314)
T cd00812 79 LKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKL-DG-W 155 (314)
T ss_pred HHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhc-Cc-C
Confidence 4689995 6777777777777777776 99999999999999999977644444442 1111112111 11 1
Q ss_pred cccccCCCcccccccccCCCCcccCCCCCCCC-CCchhhHHHHH----hhc----------------------CCCceEE
Q 014658 72 DSRKRNPADFALWKAAKAGEPSWDSPWGPGRP-GWHIECSAMSA----HYL----------------------SSKFDIH 124 (421)
Q Consensus 72 ~~~K~~p~DF~LWk~~~~~~~~w~spwg~grP-gWhiecsam~~----~~l----------------------g~~~Dih 124 (421)
....+ ..+..|.. .+.+.+||.-.| +|+|+|...+. .|+ -+|.|||
T Consensus 156 p~~~~--~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~ 228 (314)
T cd00812 156 PEEVR--AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIY 228 (314)
T ss_pred CHHHH--HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeee
Confidence 11111 13445654 556778998888 58888854222 111 1278999
Q ss_pred eecccCcCcchH---HHHHHHHhccC---CCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCC
Q 014658 125 GGGIDLIFPHHE---NEIAQSCAACQ---DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHY 198 (421)
Q Consensus 125 ~gG~Dli~pH~~---~~~a~~~a~~~---~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~ 198 (421)
++|+|+++||+. ++++++.+++. .++.++ ++||||+++|+|||||+||+|+|.|++++||+|++|||+++.+.
T Consensus 229 v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~-~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~ 307 (314)
T cd00812 229 IGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGL-IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP 307 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHcCcccccccCcHHh-eecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999999985 55555555542 456666 46799999999999999999999999999999999999999755
Q ss_pred CCCcccCH
Q 014658 199 RSPLNYSV 206 (421)
Q Consensus 199 ~~d~~fs~ 206 (421)
.|.+|++
T Consensus 308 -~~~~f~~ 314 (314)
T cd00812 308 -PDADFDW 314 (314)
T ss_pred -cCCCCCC
Confidence 8888874
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=240.97 Aligned_cols=210 Identities=20% Similarity=0.229 Sum_probs=169.1
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCC
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHY 198 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~ 198 (421)
.|+.+-|.|..+-|...-...+.|+++. |++++++| ||++ -+|+|||||+||+|+|.+++++||+|+||+|+++++|
T Consensus 556 aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltH-GfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~ 634 (933)
T COG0060 556 ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTH-GFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDY 634 (933)
T ss_pred CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhc-ccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCc
Confidence 3999999999999999999999999986 78888666 9998 4899999999999999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC------CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHH
Q 014658 199 RSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 272 (421)
Q Consensus 199 ~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~ 272 (421)
..|+.||++.++.....+.+|+|+++++..++..+.+.. ....+|+|++.+++.+...+.++| ++|+|+++++
T Consensus 635 ~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eay-e~y~f~~v~~ 713 (933)
T COG0060 635 WEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAY-ENYDFHKVVR 713 (933)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999999989999999999999988888776432 123578999999999999999999 9999999999
Q ss_pred HHHHHHH-HHH-HHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhcc-CCCCChHHHHHHH
Q 014658 273 GAFQDAL-KFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQL 334 (421)
Q Consensus 273 ~~l~~~~-~~~-N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilGi-~~~~~~~~~~~~~ 334 (421)
. |++|+ ..+ |.|++..+. |.+......+.+.-.++...+..+..++.. +|= +.+++.+.+
T Consensus 714 ~-l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPf-taEeiw~~l 778 (933)
T COG0060 714 A-LMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPF-TAEEIWQNL 778 (933)
T ss_pred H-HHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhC
Confidence 9 99999 444 678887664 643222233333333344445556666663 332 345555444
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-25 Score=223.08 Aligned_cols=196 Identities=23% Similarity=0.298 Sum_probs=130.9
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC--C----CccccccccchhhhCCCCccc
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--P----NYGRLSGQRLENNRAGERVAV 71 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~--~----~Yg~ls~~~~~~~~~g~~v~~ 71 (421)
|++|||..+ ...|..++|++.|++++.+|.++|++|...+.|||.+..- + ++.++..+-++-+ .. ++.
T Consensus 97 ~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~-~~--~~~ 173 (338)
T cd00818 97 FQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEAN-DK--VNW 173 (338)
T ss_pred HHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHH-hc--CcE
Confidence 467999877 5677777999999999999999999999999999953221 1 2222222111111 11 111
Q ss_pred cc--cccCCCcccccccc-cCCCCcccCCCCCCCCCCchh-hH--------------------HHHH-hh------c--C
Q 014658 72 DS--RKRNPADFALWKAA-KAGEPSWDSPWGPGRPGWHIE-CS--------------------AMSA-HY------L--S 118 (421)
Q Consensus 72 ~~--~K~~p~DF~LWk~~-~~~~~~w~spwg~grPgWhie-cs--------------------am~~-~~------l--g 118 (421)
-+ .|. -+.=|-.. ++--.+.+..||.-.|.|.++ |+ .++. .+ + -
T Consensus 174 ~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~ 250 (338)
T cd00818 174 IPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEEL 250 (338)
T ss_pred ECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhcc
Confidence 01 111 11112221 011123345677777766553 30 1111 11 1 1
Q ss_pred CCceEEeecccCcC--cchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 119 SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 119 ~~~Dih~gG~Dli~--pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
+|.|+|+.|+||++ ||...++++. +.+..||.++++| |+++ .+|+|||||+||+|+|.|++++||+|++||||++
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~h-g~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~ 328 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVH-GFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVAS 328 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEE-eeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHh
Confidence 47899999999998 7788877764 3334578999887 8876 5899999999999999999999999999999998
Q ss_pred c-CCCCCccc
Q 014658 196 A-HYRSPLNY 204 (421)
Q Consensus 196 ~-~~~~d~~f 204 (421)
. ++.+|++|
T Consensus 329 ~~~~~~d~~~ 338 (338)
T cd00818 329 SDVYAEDLRF 338 (338)
T ss_pred CCCccCCCCC
Confidence 6 68999876
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=218.95 Aligned_cols=199 Identities=19% Similarity=0.212 Sum_probs=136.8
Q ss_pred CCCCCCCCC-Ccccc--ccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCcccc-----
Q 014658 1 MADLQCLPP-TYQPR--VSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVD----- 72 (421)
Q Consensus 1 m~~Lnv~~p-~~~~r--~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~----- 72 (421)
|++|||.-. +.+.+ ..+|+..+..++.+|.++|++|.....||||+.+-..+.. ..+- ...|.+++..
T Consensus 96 ~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~---~evc-~~cg~~~~~~~~~qw 171 (382)
T cd00817 96 LKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISD---IEVC-SRSGDVIEPLLKPQW 171 (382)
T ss_pred HHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCc---chhc-ccCCCeEEEEecCee
Confidence 356787631 13333 3449999999999999999999999999999987655332 2221 1233333211
Q ss_pred -------------ccccCCCcc---------cccccc-cCCCCcccCCCCCCCCCCchh---------------------
Q 014658 73 -------------SRKRNPADF---------ALWKAA-KAGEPSWDSPWGPGRPGWHIE--------------------- 108 (421)
Q Consensus 73 -------------~~K~~p~DF---------~LWk~~-~~~~~~w~spwg~grPgWhie--------------------- 108 (421)
..+.+|-.| .-|-.. .+=-++.+..||...|-|.-+
T Consensus 172 f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (382)
T cd00817 172 FVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPE 251 (382)
T ss_pred EEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccc
Confidence 112222110 001111 011123456788877776531
Q ss_pred -----------------------hHHHHH--hh------c--CCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEE
Q 014658 109 -----------------------CSAMSA--HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYW 154 (421)
Q Consensus 109 -----------------------csam~~--~~------l--g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~ 154 (421)
+.+... .+ + -+|.|+|++|+||++|||.++++++.++.+. |+.+++
T Consensus 252 ~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~ 331 (382)
T cd00817 252 ACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVY 331 (382)
T ss_pred cccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeE
Confidence 111111 11 1 1378999999999999999999999998775 668898
Q ss_pred Eeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCccc
Q 014658 155 MHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 204 (421)
Q Consensus 155 ~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~f 204 (421)
+| |+|+ .+|+|||||+||+|+|.|++++||+|++|||+++. ++.+|.+|
T Consensus 332 ~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 332 LH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred ee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 87 9988 79999999999999999999999999999999986 78999876
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=230.35 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=140.7
Q ss_pred Ccc-cCCCCCCCCCCchh-----hHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc------cC-CCCCcEEEeee
Q 014658 92 PSW-DSPWGPGRPGWHIE-----CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA------CQ-DSNVSYWMHNG 158 (421)
Q Consensus 92 ~~w-~spwg~grPgWhie-----csam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~------~~-~~~~~~~~h~g 158 (421)
+.| +|+|..-|-+|.-. -.....++ +|+|+.++|.|++..|..|......++ .+ .||+++ +|||
T Consensus 491 DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~--~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G 567 (805)
T PRK00390 491 DTFVGSSWYYLRYTDPHNDEAPFDKEAANYW--LPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQG 567 (805)
T ss_pred ccccccccHHHHhcCcccccCcCChHHhhCc--CCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecC
Confidence 445 68776544444210 01122233 399999999998866655544333222 23 588887 7789
Q ss_pred eeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 014658 159 HVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG 237 (421)
Q Consensus 159 ~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 237 (421)
|| |||||+||+|+|.+++++||+|++|||+++ ++|++|++|+++.+.++.+.+.++++.+........... .
T Consensus 568 ~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~ 640 (805)
T PRK00390 568 MV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--V 640 (805)
T ss_pred cE-----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--c
Confidence 99 999999999999999999999999999998 599999999999999999999999998876332221111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Q 014658 238 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 286 (421)
Q Consensus 238 ~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi 286 (421)
.....|++++.+++.++.+++++| ++|+++.|++. |++|++.+++|+
T Consensus 641 ~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~-l~~f~n~lsk~~ 687 (805)
T PRK00390 641 AALSEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNALYKAE 687 (805)
T ss_pred ccChhhHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHH
Confidence 123467999999999999999999 89999999999 999999999987
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=231.07 Aligned_cols=202 Identities=22% Similarity=0.173 Sum_probs=144.5
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|+|++++|+||+|+|..+.+.++.|++++ ||++-+++||||+.+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~ 749 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAG 749 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcC
Confidence 599999999999999999999999999875 887755677999999999999999999999999999999999999986
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP---FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 273 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~---~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~ 273 (421)
++.+|.+|+++.+..+...+.++ +..+...+.. ..........|+|+++.++.++.++.++| ++|+++.|++.
T Consensus 750 ~~~~D~nF~~k~~n~~~~~l~n~---~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~ 825 (1084)
T PLN02959 750 DGVDDANFVFETANAAILRLTKE---IAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKS 825 (1084)
T ss_pred CccCCCCccHHHHHHHHHHHHHH---HHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 78899999999887655444333 2222222111 11111123568999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 274 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 274 ~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.++++......|..... .. ......+..++..++++|. |+|= ..+++++.+
T Consensus 826 ~~Yel~~~k~~yr~~~~----~~-----~~~~~~L~~vl~~~l~LLaP~~Pf-iaEEiW~~l 877 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCG----SG-----GMNRDLVWRFMDVQTRLITPICPH-YAEHVWREI 877 (1084)
T ss_pred HHHHHHHhHHHHhhccc----cc-----hHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhc
Confidence 33334444343332111 00 0112234455666677776 3332 344555544
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=225.59 Aligned_cols=188 Identities=15% Similarity=0.100 Sum_probs=143.5
Q ss_pred cccCCCCCCCCCCchh-----hHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh------ccC-CCCCcEEEeeeee
Q 014658 93 SWDSPWGPGRPGWHIE-----CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA------ACQ-DSNVSYWMHNGHV 160 (421)
Q Consensus 93 ~w~spwg~grPgWhie-----csam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a------~~~-~~~~~~~~h~g~l 160 (421)
+.+|+|..-|-.|.-. ......+++ |+|+.+||+|++..|..|......+ +.+ .||+++++| |||
T Consensus 490 w~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~-G~V 566 (842)
T TIGR00396 490 FAGSSWYYLRYLDPKNTDQPFDKEKAEYWL--PVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQ-GMV 566 (842)
T ss_pred cccCCHHHHHhhCCCCcCCCcChHHHhccC--CCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhcc-ceE
Confidence 3468887655443211 112223333 9999999999987776664443322 223 588999665 999
Q ss_pred ee-----CCc---------------------------ccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHH
Q 014658 161 TN-----NNE---------------------------KMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVL 207 (421)
Q Consensus 161 ~~-----~G~---------------------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e 207 (421)
+. +|+ |||||+||+|+|.+++++||+|++|||+++ +++++|++|+++
T Consensus 567 l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~ 646 (842)
T TIGR00396 567 LGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDS 646 (842)
T ss_pred EeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHH
Confidence 86 788 999999999999999999999999999997 599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc--cCCCCCCCChHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHH
Q 014658 208 QLDSASDAVFYIYQTLQDCEVALSPFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLN-TSHILTGAFQDALKFINS 284 (421)
Q Consensus 208 ~l~~~~~~l~~l~~~l~~~~~~~~~~~--~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~-~~~Al~~~l~~~~~~~N~ 284 (421)
.+..+.+.+.+++|.+..+...+.... ........|+|++.+++.++.+++++| ++|+ ++.|++. +++|++.+.+
T Consensus 647 ~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~-l~~f~n~L~~ 724 (842)
T TIGR00396 647 GLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISA-MMILLNALYK 724 (842)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHHHh
Confidence 999999999999999877654433211 111123467899999999999999999 7888 9999999 9999987665
Q ss_pred H
Q 014658 285 S 285 (421)
Q Consensus 285 y 285 (421)
+
T Consensus 725 ~ 725 (842)
T TIGR00396 725 A 725 (842)
T ss_pred h
Confidence 4
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=203.90 Aligned_cols=277 Identities=12% Similarity=0.068 Sum_probs=197.2
Q ss_pred CCCCCCCCCccc--cccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 2 ADLQCLPPTYQP--RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 2 ~~Lnv~~p~~~~--r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
++|||.- |.+. .-+-+-..+.+.++.|.++|++|+. |.++++++ .||. + +.
T Consensus 246 ~~l~V~f-D~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~---~~~d-------------------~---~~ 298 (566)
T TIGR00456 246 ARLNIHF-DSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLT---LFGD-------------------K---DK 298 (566)
T ss_pred HHcCCce-eeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcc---cccC-------------------C---CC
Confidence 4677763 5555 3333555677888999999999987 99998764 3331 0 12
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhc-CCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEE
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYL-SSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWM 155 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~l-g~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~ 155 (421)
|.+|=|. +|.+.+.++ ..++...++- |..--|.+.|.| ||.+...+. ++++.+++.++ .
T Consensus 299 ~~vl~ks--DGt~~Y~t~----------DiA~~~~k~~~~~d~iI~V~g~~----q~~h~~~v~~~l~~lG~~~~~~l-~ 361 (566)
T TIGR00456 299 DRVLQKS--DGTYLYLTR----------DIAYHLDKLERGFDKMIYVWGSD----HHLHIAQFFAILEKLGFYKKKEL-I 361 (566)
T ss_pred CeEEEEC--CCCceechh----------hHHHHHHHHhcCCCEEEEEecCc----HHHHHHHHHHHHHHcCCCCCCce-E
Confidence 6777775 565555443 2333333332 445678999999 777765544 44544444555 8
Q ss_pred eeeeeeeCCcccccccCCccCHH-----------------------HHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHH
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIR-----------------------QITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 212 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~-----------------------dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~ 212 (421)
|++|++++|.|||||+||+|+|. ++++.+|.|++|||+|+....+|++|+++.+.+.
T Consensus 362 h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~ 441 (566)
T TIGR00456 362 HLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSF 441 (566)
T ss_pred EEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhcc
Confidence 88999999999999999999998 7777899999999999988899999999987664
Q ss_pred H----HHHHHHHHHHHHHHHhcCC--ccc-C---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 014658 213 S----DAVFYIYQTLQDCEVALSP--FQE-H---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 282 (421)
Q Consensus 213 ~----~~l~~l~~~l~~~~~~~~~--~~~-~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~ 282 (421)
. ..+++.+.|+..+...... ... . ....+.+..++..+..+.+.+.+++ ++++++.++.. ++++++.+
T Consensus 442 ~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~-l~~La~~~ 519 (566)
T TIGR00456 442 EGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNY-LYELASLF 519 (566)
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHH
Confidence 3 2355555554433221110 000 0 0112234567788899999999999 99999999999 99999999
Q ss_pred HHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 283 NSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 283 N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
|+|++.+....+. .....++.++.++..+|...|.+|||.+.
T Consensus 520 N~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 520 SSFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred HHHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999988554422 12356888999999999999999999753
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-22 Score=212.37 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=136.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-------CCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHH
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALR 190 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-------~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR 190 (421)
+|+|+++||+||+..|..|.+..+.|++. +||+++ +.+|||+. +|+|||||+||+|+|.+++++||+|++|
T Consensus 525 ~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~R 603 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVR 603 (814)
T ss_pred cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEecCCCccccccCCCCCHHHHHHHhCchHHH
Confidence 39999999999999999999999999873 477778 67899998 8999999999999999999999999999
Q ss_pred HHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCC-hHHHHHHHHHHHHHHHHHHhc-cCh
Q 014658 191 HFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARIN-PAAEDCINKLRDEFHARMSDD-LNT 267 (421)
Q Consensus 191 ~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~l~~~l~~~~~~v~~a~~dd-~~~ 267 (421)
+|++.. ++.+|++|+++.+..+.+.|.++|+.+....+..... ..... ..+...++++...+.+.+ +. +.+
T Consensus 604 l~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~~~v~~~~-e~~~~~ 677 (814)
T COG0495 604 LYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTKEQGKEDRWLLHRTIKKVTEDF-EARQTF 677 (814)
T ss_pred HHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccchhhHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 999995 8999999999999999999999998876543221000 00011 334455777788888888 55 888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 014658 268 SHILTGAFQDALKFINSSLNMLK 290 (421)
Q Consensus 268 ~~Al~~~l~~~~~~~N~yi~~~~ 290 (421)
+.|++. +|+|++.+.+|.....
T Consensus 678 nt~i~~-~m~l~N~l~~~~~~~~ 699 (814)
T COG0495 678 NTAIAA-LMELLNALRKYLRRTE 699 (814)
T ss_pred HHHHHH-HHHHHHHHHHHHhccc
Confidence 999999 9999999999887644
|
|
| >KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=205.22 Aligned_cols=223 Identities=18% Similarity=0.241 Sum_probs=177.2
Q ss_pred cccCC--CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccc
Q 014658 93 SWDSP--WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMS 168 (421)
Q Consensus 93 ~w~sp--wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMS 168 (421)
.|.|+ |...--||.-+..++..-| |.++-=.|.||+|||---...+.+-++|+ ||.++++| |+|. -.|+|||
T Consensus 520 TWFSS~L~PfS~lGWP~~t~d~~~fy---P~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMS 595 (995)
T KOG0432|consen 520 TWFSSGLWPFSTLGWPEETKDFKNFY---PLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMS 595 (995)
T ss_pred hhhhcccccchhcCCccccccHHhcC---CchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeec-hhhccccccccc
Confidence 67765 7788889998766665433 78888899999999988888887778886 99999887 9998 5899999
Q ss_pred cccCCccCHHHHHH------------------------------hc-------CchHHHHHHhhc-CCCCCcccCHHHHH
Q 014658 169 KSLGNFFTIRQITE------------------------------RY-------HPLALRHFLISA-HYRSPLNYSVLQLD 210 (421)
Q Consensus 169 KSlGN~i~~~dll~------------------------------~y-------g~D~lR~~ll~~-~~~~d~~fs~e~l~ 210 (421)
||+||||+|.|+|+ .| |.|++||.|++. .-..|++++...+.
T Consensus 596 KSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~ 675 (995)
T KOG0432|consen 596 KSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVE 675 (995)
T ss_pred hhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHh
Confidence 99999999999998 34 999999999985 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-cccC----CC-CCC-CChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HH
Q 014658 211 SASDAVFYIYQTLQDCEVALSP-FQEH----GK-TAR-INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KF 281 (421)
Q Consensus 211 ~~~~~l~~l~~~l~~~~~~~~~-~~~~----~~-~~~-~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~ 281 (421)
....++++|||..+++..++.. +.+. .. ... .|.|++..+...++.+.+.| +.++|+.|... +..|. ..
T Consensus 676 g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a-~~~Fwl~~l 753 (995)
T KOG0432|consen 676 GYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSA-LYAFWLYDL 753 (995)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH-HHHHHHHHH
Confidence 9888999999999887766543 2111 11 112 78999999999999999999 99999999999 99987 57
Q ss_pred HHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCC
Q 014658 282 INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLP 323 (421)
Q Consensus 282 ~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~ 323 (421)
|..|+...+| |... ..........+..++...|++|. ++|
T Consensus 754 CDVYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMP 796 (995)
T KOG0432|consen 754 CDVYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMP 796 (995)
T ss_pred HHHHHHHhhHHhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 8899999999 4311 11122233445566667778777 344
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-21 Score=212.40 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=125.5
Q ss_pred CCceEEeecccCcCcchHHHHHH-------HHhccCCCCCcEEEeeeeee----------eCCc----------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQ-------SCAACQDSNVSYWMHNGHVT----------NNNE---------------- 165 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~-------~~a~~~~~~~~~~~h~g~l~----------~~G~---------------- 165 (421)
.|+|+.+||.|+.--|..|-... ....+..||++++.| |||+ .+|+
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~q-GmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~ 693 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQ-GMILGEVEYTAFKDSDGEYVSADTADRLGELQQE 693 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhcc-ceeecCccccceecCCCcCccccccccccccccc
Confidence 49999999999964444433333 332224699999555 9997 3455
Q ss_pred -----------------------------ccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH
Q 014658 166 -----------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA 215 (421)
Q Consensus 166 -----------------------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~ 215 (421)
|||||+||+|+|.+++++||+|++|||+|+. +..+++.|+.+.+..+.+.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rf 773 (963)
T PLN02563 694 KIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRF 773 (963)
T ss_pred ccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHH
Confidence 9999999999999999999999999999985 7889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccCC--CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 216 VFYIYQTLQDCEVALSPFQEHG--KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 216 l~~l~~~l~~~~~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
+.++||.+.........+.... .....+.+++..++.++.+++++| ++|+|+.|++. +|+|++.++
T Consensus 774 L~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~-e~y~FntAi~~-lmef~n~l~ 841 (963)
T PLN02563 774 LGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEI-ESTRFNTAISA-MMEFTNAAY 841 (963)
T ss_pred HHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHh
Confidence 9999988654311000111111 112357889999999999999999 89999999999 999998765
|
|
| >cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=159.22 Aligned_cols=155 Identities=28% Similarity=0.372 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Q 014658 207 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 286 (421)
Q Consensus 207 e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi 286 (421)
+.|.++.+.+.++++++..+. ... .. ...+..+...|.++|+||||||.|+.. |+++++.+|.++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~ 66 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLK 66 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHh
Confidence 568888889988888877652 110 00 112345668899999999999999999 999999999988
Q ss_pred hhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChH
Q 014658 287 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFS 366 (421)
Q Consensus 287 ~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~ 366 (421)
+.. + . .+..+...+..++.+|||... ....... . .........+.|+.|+++|++||++|||+
T Consensus 67 ~~~-~---~--------~~~~~~~~l~~~~~vLGl~~~-~~~~~~~---~-~~~~~~~~~~~v~~Ll~~R~~aR~~Kdf~ 129 (156)
T cd07963 67 KED-I---E--------KAAALAALLKALGGVLGLLQQ-DPEAFLQ---G-GTGEGGLSVAEIEALIAQRNQARKAKDWA 129 (156)
T ss_pred ccc-h---H--------HHHHHHHHHHHHHhccCCCCC-CHHHHHh---c-cccccccCHHHHHHHHHHHHHHHHhcCHH
Confidence 542 1 0 123345667778889998432 1111110 0 00001122346999999999999999999
Q ss_pred HHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 367 KSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 367 ~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
.||+||++|.++||.|+|+|+||+|++
T Consensus 130 ~AD~IRd~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 130 EADRIRDELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHHHHHHHHCCcEEEECCCCceeeC
Confidence 999999999999999999999999974
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. |
| >KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=184.04 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=148.1
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh------cCchHHHH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER------YHPLALRH 191 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~------yg~D~lR~ 191 (421)
..|+...|.|..+.|...-.-++.|..++ |+..+++| ||.. .+|.|||||+||||+|..++++ ||+|++||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivH-GFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVH-GFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheeee-eeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 58999999999999999999999998875 88889777 8887 5899999999999999999998 99999999
Q ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC------CCCCCChHHHHHHHHHHHHHHHHHHhcc
Q 014658 192 FLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDL 265 (421)
Q Consensus 192 ~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~a~~dd~ 265 (421)
|...+.+..++...+..|.++...+.++.++++++.+.+.++.... ...-+|+.++.++.++..++.+.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 9998899999999999999999999999999999998887765421 123468899999999999999999 999
Q ss_pred ChHHHHHHHHHHHHH--HHHHHHhhhc
Q 014658 266 NTSHILTGAFQDALK--FINSSLNMLK 290 (421)
Q Consensus 266 ~~~~Al~~~l~~~~~--~~N~yi~~~~ 290 (421)
+|.+++.. |..|+. ..|.|++-.+
T Consensus 724 ~f~kVv~~-lq~F~~~~lSa~YfdivK 749 (937)
T KOG0433|consen 724 KFRKVVND-LQQFLQRNLSAFYFDIVK 749 (937)
T ss_pred cHHHHHHH-HHHHHHHHhhHHHHHHHh
Confidence 99999999 999885 3466777654
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=184.38 Aligned_cols=276 Identities=14% Similarity=0.078 Sum_probs=197.2
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
++|||.- |.+--=|.|-+.+-+.++.|.++|++|+.+|.++++++. +| . .|.
T Consensus 245 ~~l~V~f-D~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~---~g--------------------~----~~~ 296 (562)
T PRK12451 245 ELLGVEF-TNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEE---EG--------------------M----PPC 296 (562)
T ss_pred HHcCCCc-eeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecc---cC--------------------C----Cce
Confidence 5688864 555555567777889999999999999999999987532 22 0 156
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhh--cCCCceEEeecccCcCcchHHHHHHHHh---ccCCCCCcE-EE
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQSCA---ACQDSNVSY-WM 155 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~--lg~~~Dih~gG~Dli~pH~~~~~a~~~a---~~~~~~~~~-~~ 155 (421)
+|=|. +|.+.+.++ ..+...+++ +|..--|.+.|.| ||.+..-+..+ ++..+..++ .+
T Consensus 297 vl~ks--DGt~~Y~t~----------DiA~~~~k~~~~~~d~~IyV~g~d----q~~h~~~l~~~~~~lg~~~~~~l~h~ 360 (562)
T PRK12451 297 LIRKS--DGATIYATR----------DLTAALYRQNTFGFDKALYVVGPE----QSLHFNQFFTVLKKLGYTWVDGMEHV 360 (562)
T ss_pred EEEeC--CCccccchh----------HHHHHHHHhhccCCCEEEEEeCCc----HHHHHHHHHHHHHHcCCCcccCeEEE
Confidence 66665 555544443 333333444 4555679999999 77777655544 332222222 13
Q ss_pred eeeeeeeCCcccccccCCccCHHHHHHh-------------------------cCchHHHHHHhhcCCCCCcccCHHHHH
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIRQITER-------------------------YHPLALRHFLISAHYRSPLNYSVLQLD 210 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~dll~~-------------------------yg~D~lR~~ll~~~~~~d~~fs~e~l~ 210 (421)
..|+|+.+|.||||+.||+|++.||++. .|.+++||++|+.+..++++|+++.+.
T Consensus 361 ~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l 440 (562)
T PRK12451 361 PFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENML 440 (562)
T ss_pred eeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHh
Confidence 3467878999999999999999999996 679999999999999999999999965
Q ss_pred HHH-H-------HHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 014658 211 SAS-D-------AVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 282 (421)
Q Consensus 211 ~~~-~-------~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~ 282 (421)
... + ...|+.+.++.....+.. .......+.+..++..+..+.+.+.+++ ++++++.++.. ++++++.+
T Consensus 441 ~~~g~t~pYiQYa~AR~~SIlrka~~~~~~-~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~y-l~~LA~~f 517 (562)
T PRK12451 441 KFEGETGPYVQYTHARACSILRKESVEFET-CTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKY-VLDVAQSF 517 (562)
T ss_pred CcCCCccHHHHHHHHHHHHHHHhcCCCccc-cccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHH
Confidence 443 2 124555555443100000 0001112334677888999999999999 99999999999 99999999
Q ss_pred HHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 283 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 283 N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
|+|++.++..........++.++.++..+|...|.+|||.+.
T Consensus 518 N~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~~ 559 (562)
T PRK12451 518 NKYYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGVEAP 559 (562)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999988776532223456888999999999999999999753
|
|
| >KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=176.57 Aligned_cols=265 Identities=14% Similarity=0.087 Sum_probs=192.5
Q ss_pred CCCCCccccccccH----HHHHHHHHHHHHcCCeeeeCCc----EEEeccCCCCccccccccc-hhhhCCCCcccccccc
Q 014658 6 CLPPTYQPRVSDHM----EQIKDMITQIINNDCAYVVEGD----VFFAVEKSPNYGRLSGQRL-ENNRAGERVAVDSRKR 76 (421)
Q Consensus 6 v~~p~~~~r~t~~i----~~i~~~i~~L~~~g~aY~~~~~----vyf~v~~~~~Yg~ls~~~~-~~~~~g~~v~~~~~K~ 76 (421)
|-..+..+|.|+|+ +....-++..+.+-.+ .|+ --+=+.++-.-| |.++++ .|+++|.+|+++..|.
T Consensus 187 ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~---~~~WS~Na~~it~sWlk~g-l~pRCiTRDLkWGtpVPle~fk~ 262 (567)
T KOG1247|consen 187 ICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLV---EGDWSQNAQNITRSWLKDG-LKPRCITRDLKWGTPVPLEKFKD 262 (567)
T ss_pred eeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccc---cCCCccchHHHHHHHHHcc-ccccccccccccCCCcChhhhcc
Confidence 34456777888886 6666666666665321 122 111123333444 777887 4899999999998776
Q ss_pred CCCcccccccccCCCCcc----cCCCCCCCCCCchhhHHHHHhhcCCCc---eEEeecccCcCcchHHHHHHHHhccCC-
Q 014658 77 NPADFALWKAAKAGEPSW----DSPWGPGRPGWHIECSAMSAHYLSSKF---DIHGGGIDLIFPHHENEIAQSCAACQD- 148 (421)
Q Consensus 77 ~p~DF~LWk~~~~~~~~w----~spwg~grPgWhiecsam~~~~lg~~~---Dih~gG~Dli~pH~~~~~a~~~a~~~~- 148 (421)
- -|..|..+..|..+- -..|+ +++..|- -+++.|||.+.||....|+...+...+
T Consensus 263 K--VfYVWFDA~IGYlsit~~yt~ew~---------------kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~ 325 (567)
T KOG1247|consen 263 K--VFYVWFDAPIGYLSITKNYTDEWE---------------KWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENY 325 (567)
T ss_pred c--EEEEEEcCcceEEEeehhhhHHHH---------------HHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCc
Confidence 4 499999988876421 12221 1222222 347899999999999999988777553
Q ss_pred CCCcEEEeeeeeeeCCcccccccCCccCHHHHHH-hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHH
Q 014658 149 SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQ 221 (421)
Q Consensus 149 ~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~ 221 (421)
+..+.+....+|+.+..|+|||+|-.|.-.++.+ ..+++..|||||+. +-.+|..|||+.+....| +++|+.|
T Consensus 326 t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvN 405 (567)
T KOG1247|consen 326 TVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVN 405 (567)
T ss_pred hhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHH
Confidence 5566667778889999999999999999888876 48999999999996 889999999999988754 4677777
Q ss_pred HHHH-HHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 222 TLQD-CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 222 ~l~~-~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
|+.. +....++..+.-....-+..+++.++.+..++.++| +.-.+..|++. +|++.+..|.|++.++-|+
T Consensus 406 R~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~-~m~is~~GNqylQ~~~~~k 476 (567)
T KOG1247|consen 406 RVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKT-AMEISRRGNQYLQENTDNK 476 (567)
T ss_pred HHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhhHHHhcccccc
Confidence 7443 333233322211223347789999999999999999 99999999999 9999999999999987665
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=170.34 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=201.3
Q ss_pred CCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 2 ADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
++|||. -|.+---++ +-..|-+.|+.|.++|++|+.+|..+.|..+|..||. +.
T Consensus 250 ~~l~V~-fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd-----------------------~~ 305 (577)
T COG0018 250 DRLGVK-FDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGD-----------------------DK 305 (577)
T ss_pred HHhCcc-cceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCC-----------------------CC
Confidence 457775 455543333 3345778999999999999999999999888775553 12
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhh-cCCCceEEeecccCcCcchHHHHHHHHh---ccCCCCCcEEE
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSCA---ACQDSNVSYWM 155 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~-lg~~~Dih~gG~Dli~pH~~~~~a~~~a---~~~~~~~~~~~ 155 (421)
|.+|=|. +|-..+-++ .-+...+++ .|...-|.+.|.| ||.+..-+..+ ++..+...+.+
T Consensus 306 ~~vl~KS--DGt~lY~t~----------DIAy~~~K~~~~~d~~IyV~gad----q~~~~~ql~~~l~~~g~~~~~~~~~ 369 (577)
T COG0018 306 DRVLQKS--DGTYLYFTR----------DIAYHLYKFERGFDKLIYVLGAD----QHGHFKQLKAVLELLGYGPDKEVLL 369 (577)
T ss_pred CeEEEEc--CCCeeeehh----------HHHHHHHHHhcCCCEEEEEeCCc----chhHHHHHHHHHHHhcCCCccceEE
Confidence 5666554 444333333 223344445 5667789999999 77776555442 22333335667
Q ss_pred eeeeeee---CCcccccccCCccCHHHHHHhcC----------------------chHHHHHHhhcCCCCCcccCHHHHH
Q 014658 156 HNGHVTN---NNEKMSKSLGNFFTIRQITERYH----------------------PLALRHFLISAHYRSPLNYSVLQLD 210 (421)
Q Consensus 156 h~g~l~~---~G~KMSKSlGN~i~~~dll~~yg----------------------~D~lR~~ll~~~~~~d~~fs~e~l~ 210 (421)
|.++-++ +|.||||..||+|+++|+++.-+ .+++||++++.+..+++.|+++.+.
T Consensus 370 h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~l 449 (577)
T COG0018 370 HQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKAL 449 (577)
T ss_pred EEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHH
Confidence 8766554 57899999999999999999888 9999999999999999999999987
Q ss_pred HHHH-H-------HHHHHHHHHHHHHhcCCcccC---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 014658 211 SASD-A-------VFYIYQTLQDCEVALSPFQEH---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 279 (421)
Q Consensus 211 ~~~~-~-------l~~l~~~l~~~~~~~~~~~~~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~ 279 (421)
+-.. . ..|+.+.++.....-...... ......+.+|+..+.++...+.++. +++.++..... |++++
T Consensus 450 sfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~Ph~la~Y-L~~LA 527 (577)
T COG0018 450 SFEGNTAPYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELEPHRLANY-LYDLA 527 (577)
T ss_pred hccCCCchhHHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcCchHHHHH-HHHHH
Confidence 6542 1 345555555433210000000 1112234678889999999999999 99999999999 99999
Q ss_pred HHHHHHHhhhcccCchh--hhhhhHHHHHHHHHHHHHHHhHhccCC
Q 014658 280 KFINSSLNMLKKKQPKQ--QQLSLIESLRKIENEVKEVLRILGLLP 323 (421)
Q Consensus 280 ~~~N~yi~~~~pw~~~~--~~~~~~~~l~~~~~~l~~~l~ilGi~~ 323 (421)
..+|+|++.+....... ...+++.++.++..+|...|.+|||.+
T Consensus 528 ~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~ 573 (577)
T COG0018 528 GSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEA 573 (577)
T ss_pred HHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999988764322 344678899999999999999999964
|
|
| >KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-17 Score=165.18 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=157.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
-|.|.-..|.|..+.|..--.-.+.+++++ ||+|+ +++|.|+ .+|+|||||+.|.-+|..++++||+|++|+||+.+
T Consensus 553 fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInS 631 (1070)
T KOG0434|consen 553 FPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINS 631 (1070)
T ss_pred CchHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecC
Confidence 388888999999999998888888999986 67888 6679998 59999999999999999999999999999999998
Q ss_pred CC--CCCcccCHHHHHHHHHH-HHHHHHHHHHHHHhcCCccc--C---------CCCCCCChHHHHHHHHHHHHHHHHHH
Q 014658 197 HY--RSPLNYSVLQLDSASDA-VFYIYQTLQDCEVALSPFQE--H---------GKTARINPAAEDCINKLRDEFHARMS 262 (421)
Q Consensus 197 ~~--~~d~~fs~e~l~~~~~~-l~~l~~~l~~~~~~~~~~~~--~---------~~~~~~d~~l~~~l~~~~~~v~~a~~ 262 (421)
+. ...+.|.++.+.+.... +-.+||.++++.+....... + ....-.|+|++...++++.-+.+.|
T Consensus 632 PVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM- 710 (1070)
T KOG0434|consen 632 PVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM- 710 (1070)
T ss_pred ccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-
Confidence 65 67899999999998765 45778887766543221110 0 1122368999999999999999999
Q ss_pred hccChHHHHHHHHHHHHHHH-HHHHhhhcccCch-hhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 263 DDLNTSHILTGAFQDALKFI-NSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 263 dd~~~~~Al~~~l~~~~~~~-N~yi~~~~pw~~~-~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
+.|.+..++.. +..|+..+ |.|+.-+.--..+ .....+...|.++.++|..+.+++|-
T Consensus 711 ~~YrLytVvp~-llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaP 770 (1070)
T KOG0434|consen 711 DQYRLYTVVPR-LLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAP 770 (1070)
T ss_pred HheehhhhHHH-HHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999 99999855 8898765532111 11122455667777788888888884
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-18 Score=179.95 Aligned_cols=86 Identities=31% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhh-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS- 195 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~- 195 (421)
+|+|+.++|+|++++|..+.+..+.+++++ ||+++++| |+++. +|+|||||+||||+|.+++++||+|++|+|+++
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~ 591 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITH-GFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASS 591 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE---EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeec-ccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhc
Confidence 489999999999999999999999999875 88888655 99985 899999999999999999999999999999995
Q ss_pred cCCCCCcccC
Q 014658 196 AHYRSPLNYS 205 (421)
Q Consensus 196 ~~~~~d~~fs 205 (421)
+.+.+|++||
T Consensus 592 ~~~~~D~~~s 601 (601)
T PF00133_consen 592 ADPGQDINFS 601 (601)
T ss_dssp S-TTS-EEE-
T ss_pred CCcccCcccC
Confidence 6999999997
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-16 Score=162.00 Aligned_cols=274 Identities=11% Similarity=0.051 Sum_probs=185.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
+.|||.- +.. --|-|-+.+-+.++.|.++|++|+.+|.++++.+. +| .|.
T Consensus 250 ~~l~V~f-d~~-ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~---~~-------------------------~~~ 299 (576)
T PLN02286 250 QRLRVEL-EEK-GESFYNPYIPGVIEELESKGLVVESDGARVIFVEG---FD-------------------------IPL 299 (576)
T ss_pred HHhCCee-eec-CchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccC---CC-------------------------Cce
Confidence 3566652 321 22335566788899999999999999999985421 11 145
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhh--cCCCceEEeecccCcCcchHHHHHHH---HhccCCCC---CcE
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSN---VSY 153 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~--lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~---~~~ 153 (421)
+|=|. +|.+.+-++ ..++..+++ +|..--|.+.|.| |+.+...+. .+++..+. .++
T Consensus 300 vl~ks--DGt~tY~t~----------DIA~~~~k~~~~~~d~~IyVvg~~----q~~hf~~v~~~l~~lG~~~~~~~~~l 363 (576)
T PLN02286 300 IVVKS--DGGFNYAST----------DLAALWYRLNEEKAEWIIYVTDVG----QQQHFDMVFKAAKRAGWLPEDTYPRL 363 (576)
T ss_pred EEEEC--CCchhhHHH----------HHHHHHHHHhccCCCEEEEEEeCc----HHHHHHHHHHHHHHcCCCccccCCce
Confidence 55554 444433332 233333333 3445568899999 777764443 44442212 122
Q ss_pred -EEeeeeee-eCCcccccccCCccCHHHHHHh-----------------------------cCchHHHHHHhhcCCCCCc
Q 014658 154 -WMHNGHVT-NNNEKMSKSLGNFFTIRQITER-----------------------------YHPLALRHFLISAHYRSPL 202 (421)
Q Consensus 154 -~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-----------------------------yg~D~lR~~ll~~~~~~d~ 202 (421)
.+..|+|+ .+|.||||+.||+|+++|++++ .|.+++||++|+.+..+++
T Consensus 364 ~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~ 443 (576)
T PLN02286 364 EHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNY 443 (576)
T ss_pred EEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCC
Confidence 23458886 5888999999999999999993 5789999999999999999
Q ss_pred ccCHHHHHHHHH--------HHHHHHHHHHHHHHhcCCccc---CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHH
Q 014658 203 NYSVLQLDSASD--------AVFYIYQTLQDCEVALSPFQE---HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL 271 (421)
Q Consensus 203 ~fs~e~l~~~~~--------~l~~l~~~l~~~~~~~~~~~~---~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al 271 (421)
+|+++.+..... ...|+.+.++.+......... .....+.+..|+..+..+.+.+..+. +++.++..+
T Consensus 444 ~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~P~~l~ 522 (576)
T PLN02286 444 TFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLLPNRLC 522 (576)
T ss_pred ccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcCchHHH
Confidence 999999755431 124555555433210000000 01112334677888999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 272 TGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 272 ~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
.. ++++++.+|+|++.+........ ..++.++.++..+|...|.+|||.+.
T Consensus 523 ~Y-l~~LA~~F~~fY~~~~Vl~~~~~-~aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 523 EY-LYNLSEKFTKFYSNCKVNGSEEE-TSRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HH-HHHHHHHHHHHHhcCccCCCCch-hHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99 99999999999987754432222 56888999999999999999999753
|
|
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-17 Score=168.53 Aligned_cols=198 Identities=22% Similarity=0.241 Sum_probs=150.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee--CCcEEEeccCCCCccccc-cccc---------hhhhCCC-
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV--EGDVFFAVEKSPNYGRLS-GQRL---------ENNRAGE- 67 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~--~~~vyf~v~~~~~Yg~ls-~~~~---------~~~~~g~- 67 (421)
|+.||+. ++..+++|+|++.+.+++++|+++|+||.- ++.. | .+...+|..+ .+++ ++|..|.
T Consensus 162 L~wLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee-~--~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~ 237 (567)
T PRK04156 162 LKWLGVK-WDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEE-F--KELRDAGKPCPHRDKSPEENLELWEKMLDGEY 237 (567)
T ss_pred HHHcCCC-CCCccCcccCHHHHHHHHHHHHHcCCCccCCCCHHH-H--HHHHhcCCCCCCcCCCHHHHHHHHHHhhcCcc
Confidence 3568995 699999999999999999999999999963 2222 1 2223345444 2221 2333444
Q ss_pred -------CccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC---cch
Q 014658 68 -------RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---PHH 135 (421)
Q Consensus 68 -------~v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~---pH~ 135 (421)
|+..+....|| +||++|+......|. ||.++++|++ ..|..++|-|..|+++++ .|+
T Consensus 238 ~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~~----~Gd~~~i~Pt-------Y~fA~~VDD~l~GITHViRg~d~~ 306 (567)
T PRK04156 238 KEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPR----VGDKYRVWPT-------YNFAVAVDDHLLGVTHVLRGKDHI 306 (567)
T ss_pred ccCCeEEEEECcccCCCCCccccEEEEEcCCCccc----cCCCeEEEEE-------eccCceeeecCCCCCeEEcccccc
Confidence 44445556777 899999985544443 8999999986 267778999999999999 999
Q ss_pred HHHHHHHHhcc--CCCCCcEEEeeeeeeeCCccccccc-------C--------CccCHHHHHHh-cCchHHHHHHhhcC
Q 014658 136 ENEIAQSCAAC--QDSNVSYWMHNGHVTNNNEKMSKSL-------G--------NFFTIRQITER-YHPLALRHFLISAH 197 (421)
Q Consensus 136 ~~~~a~~~a~~--~~~~~~~~~h~g~l~~~G~KMSKSl-------G--------N~i~~~dll~~-yg~D~lR~~ll~~~ 197 (421)
.+.+.|...+. +-+++ .|+|.+.|+.+|.|||||. | +..++..+... |.|+++|.|++..+
T Consensus 307 ~~t~~Q~~l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG 385 (567)
T PRK04156 307 DNTEKQRYIYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVG 385 (567)
T ss_pred cChHHHHHHHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 99999986543 33434 5599999999999999998 5 45677887775 99999999999877
Q ss_pred CC-CCcccCHHHHHHHHH
Q 014658 198 YR-SPLNYSVLQLDSASD 214 (421)
Q Consensus 198 ~~-~d~~fs~e~l~~~~~ 214 (421)
++ ++..|+++.|....+
T Consensus 386 ~s~~~~~~~~~~L~~~nr 403 (567)
T PRK04156 386 VKETDATISWENLYAINR 403 (567)
T ss_pred CCCCCcccCHHHHHHHHH
Confidence 75 899999999987654
|
|
| >KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-16 Score=159.50 Aligned_cols=163 Identities=23% Similarity=0.182 Sum_probs=129.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|+|+.++|||||..|..+.+..+.|++. +.|++-+-.+||+++|++|||||.|||.|+.+.+++||+|+.|+.|..+
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 69999999999999999999999999987 4788877899999999999999999999999999999999999999885
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ---EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 273 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~---~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~ 273 (421)
.-..|.||....... .+-||++-+..+.+++.... .+....-.|+-+.+.++.++..-.+++ ++.++..|+..
T Consensus 742 D~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~ 817 (1080)
T KOG0437|consen 742 DGVEDANFVEANANA---AILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKY 817 (1080)
T ss_pred CCcccchhHHhcccH---HHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh
Confidence 778899998766443 45567776666655543211 111112346677888899999999999 89999999987
Q ss_pred HHHHHHHHHHHH
Q 014658 274 AFQDALKFINSS 285 (421)
Q Consensus 274 ~l~~~~~~~N~y 285 (421)
-++++...=..|
T Consensus 818 Gfyd~qaArD~Y 829 (1080)
T KOG0437|consen 818 GFYDLQAARDMY 829 (1080)
T ss_pred hhHHHHHHHHHH
Confidence 455654433333
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=154.61 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=96.4
Q ss_pred CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHH-hccCCCCCcEEEeeeeeeeC-CcccccccCCccC
Q 014658 99 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC-AACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFFT 176 (421)
Q Consensus 99 g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~-a~~~~~~~~~~~h~g~l~~~-G~KMSKSlGN~i~ 176 (421)
|.|--.|.++. +|-..+|| +|+-.+|+|+..+++.....++. +++.++|.. +|+||++.+ |+|||||+||+|+
T Consensus 216 g~~KL~Wr~dW-~~rW~~l~--Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~ 290 (510)
T PRK00750 216 GHGKLQWKVDW-PMRWAALG--VDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVIT 290 (510)
T ss_pred CCcccCCCCCc-HHHHHHcC--CCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccC
Confidence 66778899997 78888996 89999999988865555556665 666665533 567999987 9999999999999
Q ss_pred HHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 014658 177 IRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTL 223 (421)
Q Consensus 177 ~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~l~~l~~~l 223 (421)
|.|+++.|++|++|||++. .++.++++|+. +..+.+.+.++.+.+
T Consensus 291 ~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 291 IEDWLEYAPPESLRLFMFARPKPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred HHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 9999999999999988875 58999999999 777777766665554
|
|
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=147.89 Aligned_cols=195 Identities=15% Similarity=0.107 Sum_probs=143.4
Q ss_pred cccCCCCCCCC------CCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc-------CCCCCcEEEeeee
Q 014658 93 SWDSPWGPGRP------GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC-------QDSNVSYWMHNGH 159 (421)
Q Consensus 93 ~w~spwg~grP------gWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~-------~~~~~~~~~h~g~ 159 (421)
+-+|.|..-|. -=.+. .+.+++.. |+||++||+++.--|..|-..++.-+. .+||.++ +..|+
T Consensus 497 FvDSsWYYlRylDpkN~e~~~d-~a~a~k~M--PVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~L-i~QGm 572 (876)
T KOG0435|consen 497 FVDSSWYYLRYLDPKNPEEPFD-KAKAKKNM--PVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKL-ITQGM 572 (876)
T ss_pred hhccceeeEeecCCCCcccccc-hhhhhccC--ceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHH-Hhhhc
Confidence 34788875443 11111 24444454 999999999999999999988876553 2577776 44466
Q ss_pred eee-------CC-------------------------------cccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCC
Q 014658 160 VTN-------NN-------------------------------EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRS 200 (421)
Q Consensus 160 l~~-------~G-------------------------------~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~ 200 (421)
|.- .| +|||||++|+|+|.+++.+||+|++|+|+|.. ++++
T Consensus 573 V~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~ 652 (876)
T KOG0435|consen 573 VRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRD 652 (876)
T ss_pred ccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCccc
Confidence 520 11 59999999999999999999999999999985 9999
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccCCCC----CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 201 PLNYSVLQLDSASDAVFYIYQTLQDCEVA--LSPFQEHGKT----ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 201 d~~fs~e~l~~~~~~l~~l~~~l~~~~~~--~~~~~~~~~~----~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
+++|+...+....+.+.++|+....+.+. .......... ...++.+.+..+.++..+++++...+.++.||+.
T Consensus 653 ~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~- 731 (876)
T KOG0435|consen 653 PINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISD- 731 (876)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 99999999999999999999987765443 1111111111 1223567788899999999999888999999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 014658 275 FQDALKFINSSLNMLKKK 292 (421)
Q Consensus 275 l~~~~~~~N~yi~~~~pw 292 (421)
+|.|.+.+.+-......|
T Consensus 732 ~m~ltN~l~~a~k~~~~h 749 (876)
T KOG0435|consen 732 MMGLTNALKKALKIVLVH 749 (876)
T ss_pred HHHHHHHHHHhhhhhhhc
Confidence 999888766654443333
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=141.82 Aligned_cols=126 Identities=18% Similarity=0.144 Sum_probs=91.3
Q ss_pred CCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc--chHHHHHHHH-hccCCCCCcEEEeeeeeeeCCc
Q 014658 90 GEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP--HHENEIAQSC-AACQDSNVSYWMHNGHVTNNNE 165 (421)
Q Consensus 90 ~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p--H~~~~~a~~~-a~~~~~~~~~~~h~g~l~~~G~ 165 (421)
|.-.+-+.. |.|--.|.++. +|-..++| +|+-+.|+|+.-+ ...-..+++. +++.++|. . +.+||++++|.
T Consensus 199 G~~g~~~~~~g~~KL~Wr~dW-~~rW~~l~--Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~-~-~~ye~V~l~gg 273 (353)
T cd00674 199 GHEETVDIRTGRGKLTWRVDW-PMRWAILG--VDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPV-P-VMYEFIGLKGG 273 (353)
T ss_pred CCEEEEeecCCCcccCCCCCc-hhhhhhcC--CCEEeeCccccccccHHHHHHHHHHHHhCCCCCe-E-EEeeeEEeCCC
Confidence 433333343 67888899987 67788886 8999999996654 1222333444 66655553 3 34599998775
Q ss_pred -ccccccCCccCHHHHHHhcCchHHHHHHhhcC-CCCCcccCHHHHHHHHHHHHHHHH
Q 014658 166 -KMSKSLGNFFTIRQITERYHPLALRHFLISAH-YRSPLNYSVLQLDSASDAVFYIYQ 221 (421)
Q Consensus 166 -KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~-~~~d~~fs~e~l~~~~~~l~~l~~ 221 (421)
|||||+||+|+|.|+++.+|+|++|||+++.+ ..++++|+.+.. .....+.++.+
T Consensus 274 ~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~~~-~~~dey~r~~~ 330 (353)
T cd00674 274 GKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDLDIL-RLYDEYDRLER 330 (353)
T ss_pred CccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcChhHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999986 889999998644 33444444433
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=147.01 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=97.6
Q ss_pred CCCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcc----hHHHHHHHHhccCCCCCcEEEeeeeee--
Q 014658 89 AGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVT-- 161 (421)
Q Consensus 89 ~~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH----~~~~~a~~~a~~~~~~~~~~~h~g~l~-- 161 (421)
.|.-.+-+.. |.|--.|.++. +|-..+|| +|+-..|+||.-+- ....+|+ +++++.||..+ .. +|+.
T Consensus 196 cG~~g~~~~~~g~~KL~WkvdW-~~RW~~lg--V~~Ep~GkDH~~~ggsy~~~~~ia~-~~l~~~~P~~~-~y-e~v~L~ 269 (515)
T TIGR00467 196 CGNQESVDIYTGAIKLPWRVDW-PARWKIEK--VTFEPAGKDHAAAGGSYDTGVNIAK-EIFQYSPPVTV-QY-EWISLK 269 (515)
T ss_pred CCCEEEEeecCCCcccCCCCCc-HhhHhhhC--cccccCCCCccCccCCchhHHHHHH-HHhCCCCCcCc-EE-EEEEEc
Confidence 4544444444 67888899987 78888896 89999999965432 2333444 56766665443 32 5554
Q ss_pred eCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 014658 162 NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQ 224 (421)
Q Consensus 162 ~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~ 224 (421)
.+|+|||||+||+|++.|+++.+++|++|||+++.+++++++|+.+.+ ++.+.+.++.+.+.
T Consensus 270 ~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ldFd~~~l-~~~dey~r~~~~~~ 331 (515)
T TIGR00467 270 GKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFHISFDLDVI-KLYEDYDKFERFYY 331 (515)
T ss_pred CCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCCCcCCHHHH-HHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999988 77777766665543
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-11 Score=112.73 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=88.6
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||. ++.++|.|++++.|+++|+.|+++|+||+.+|.+||+++++. .. .|
T Consensus 78 ~~~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~-------------------------~~-~d 130 (212)
T cd00671 78 YGRLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFG-------------------------DD-KD 130 (212)
T ss_pred HHHhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhC-------------------------CC-CC
Confidence 4689998 799999999999999999999999999999999999987551 11 27
Q ss_pred ccccccccCCCCcccCCCCCCCCCCch-hhHHHHHhh-cCCCceEEeecccCcCcchHHHHHH---HHhccCCCCCcEEE
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHI-ECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWM 155 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhi-ecsam~~~~-lg~~~Dih~gG~Dli~pH~~~~~a~---~~a~~~~~~~~~~~ 155 (421)
++|.|+ +|.+ ..+. .+++...++ ++...-|.+.|.| |+.+.+.+ +.+++..+..++ .
T Consensus 131 ~vl~rs--dG~~-----------~Y~~~DlA~~~~~~~~~~~~~i~v~g~~----~~~~~~~~~~~~~~lg~~~~~~~-~ 192 (212)
T cd00671 131 RVLVRS--DGTY-----------TYFTRDIAYHLDKFERGADKIIYVVGAD----HHGHFKRLFAALELLGYDEAKKL-E 192 (212)
T ss_pred eEEEEC--CCCc-----------cchHHHHHHHHHHHhcCCCEEEEEECCC----HHHHHHHHHHHHHHcCCCCCCCe-E
Confidence 888886 4444 3332 222223333 2444557899999 55554444 444543322333 4
Q ss_pred ee--eeeeeC-CcccccccC
Q 014658 156 HN--GHVTNN-NEKMSKSLG 172 (421)
Q Consensus 156 h~--g~l~~~-G~KMSKSlG 172 (421)
|. |+|+.. |.||||+.|
T Consensus 193 h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 193 HLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEEEeEEcCCCCCCCCCCC
Confidence 44 888865 999999987
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-11 Score=120.11 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh--ccC-CCCCcEEEeeeeeeeCC
Q 014658 89 AGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA--ACQ-DSNVSYWMHNGHVTNNN 164 (421)
Q Consensus 89 ~~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a--~~~-~~~~~~~~h~g~l~~~G 164 (421)
.|+-.+-+.. |.|-..|.++. +|-..++| +|+-..||||.-+-..+-.+.-.| +++ +||..+ .-+|++++|
T Consensus 205 cG~~g~~~i~~g~gKL~WkvDW-~mRW~~lg--VdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~--~YE~~~~~g 279 (360)
T PF01921_consen 205 CGHEGEVDITGGNGKLQWKVDW-PMRWAALG--VDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPF--PYEFFLDKG 279 (360)
T ss_dssp TS---EEETTTT-EEE-HHHHH-HHHHHHTT---SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEE--EE--EEES-
T ss_pred CCCEEEEecCCCcccccCCCcC-hhhhhhcC--ceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCC--CeeEEEeCC
Confidence 3443333333 46788899997 78888996 899999999777666666665544 344 555433 459999987
Q ss_pred c-ccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHH-HHHHHHHHHHHH
Q 014658 165 E-KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL-QLDSASDAVFYI 219 (421)
Q Consensus 165 ~-KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e-~l~~~~~~l~~l 219 (421)
. |||||+||+++|.|+++-+.|+.|||++++..+.+..+|+.+ .+-...+.+.++
T Consensus 280 ~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~~~~~~~~~~i~~~~Deyd~~ 336 (360)
T PF01921_consen 280 GGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNKAKDFSFDLVIPRLYDEYDRL 336 (360)
T ss_dssp -------------HHHHHTTS-HHHHHHHHHCS-TTS-EEE--STTHHHHHHHHHHH
T ss_pred CcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCcceEeccCcchHHHHHHHHHH
Confidence 6 999999999999999999999999999999888888888888 666666554443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-10 Score=116.00 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=92.6
Q ss_pred CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh--ccC-CCCCcEEEeeeeeeeCC-cccccccCCc
Q 014658 99 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA--ACQ-DSNVSYWMHNGHVTNNN-EKMSKSLGNF 174 (421)
Q Consensus 99 g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a--~~~-~~~~~~~~h~g~l~~~G-~KMSKSlGN~ 174 (421)
|.|--.|.++. +|-..+|| +|+-.-||||.-+-..|.-+...+ +++ +||..+ +- .|++++| +|||||+||+
T Consensus 211 g~~KL~WRvdW-p~RW~~lg--Vd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~-~Y-E~i~lkg~~~mSsSkG~~ 285 (521)
T COG1384 211 GEGKLPWRVDW-PMRWAALG--VDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPF-VY-EWILLKGGGKMSSSKGNV 285 (521)
T ss_pred cCcccccCcCc-cchhhccC--cccccCCcccccccCchHHHHHHHHHhcCCCCCCCC-ce-EEEEecCCcccccCCCcE
Confidence 34556688886 67778886 899999999777776676655444 345 676666 43 8999877 9999999999
Q ss_pred cCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHH-HHHHHHHHHHHHH
Q 014658 175 FTIRQITERYHPLALRHFLISAHYRSPLNYSVLQ-LDSASDAVFYIYQ 221 (421)
Q Consensus 175 i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~-l~~~~~~l~~l~~ 221 (421)
|++.|.++-+.++.+||+++++.+.+.++|+.+. |-+..+.+.++-+
T Consensus 286 i~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~~il~lvDEydr~e~ 333 (521)
T COG1384 286 ISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILKLVDEYDRLER 333 (521)
T ss_pred EcHHHHHHhcCHhHeeeeeeecCCCcceecCCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999888888888887 7666665544433
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-09 Score=106.47 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcccccccccCCCCcccCC
Q 014658 18 HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSP 97 (421)
Q Consensus 18 ~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~sp 97 (421)
+-+.+.+.++.|.++|++|+.+|.++++++.+ |. .| |++|=|. +|-+.+-+.
T Consensus 173 ~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~-------------------~k----~~Vl~ks--DGt~~Y~tr 224 (354)
T PF00750_consen 173 YSGKVDEVLERLKEKGLLYESDGALWIDLTKF---GD-------------------DK----DRVLRKS--DGTSTYLTR 224 (354)
T ss_dssp HTTHHHHHHHHHHCTTTEEEETTEEEEEGCCT---ST-------------------SS-----EEEEET--TSEB-HHHH
T ss_pred hhhHHHHHHHHHHhCCcEEecCCcEEEechhc---CC-------------------CC----cceEEcC--CCceEEEcc
Confidence 45667888999999999999999999998865 31 11 4556554 344333222
Q ss_pred CCCCCCCCchhhHHHHHhh--cCCCceEEeecccCcCcchHHH---HHHHHhccCCC-CCcEE-Eeeeeeee-CCc-ccc
Q 014658 98 WGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENE---IAQSCAACQDS-NVSYW-MHNGHVTN-NNE-KMS 168 (421)
Q Consensus 98 wg~grPgWhiecsam~~~~--lg~~~Dih~gG~Dli~pH~~~~---~a~~~a~~~~~-~~~~~-~h~g~l~~-~G~-KMS 168 (421)
..++...++ ++..--|++.|.| |+.+. .+.+.+++..+ -.++. +..|+++. +|+ |||
T Consensus 225 ----------DiA~~~~r~~~~~~d~~iyV~~~~----q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~ms 290 (354)
T PF00750_consen 225 ----------DIAYHLYRFEEYGFDKIIYVVGAD----QKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMS 290 (354)
T ss_dssp ----------HHHHHHHHHCCSS-SEEEEEEEGG----GHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-
T ss_pred ----------hHHHHHHHHhhhccccEEEEecCc----hhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCcccc
Confidence 233333444 4555678999999 55544 34444454322 23342 33355543 776 899
Q ss_pred cccCCccCHHHHHH--------------------------hcCchHHHHHHhhcCCCCCcccCH
Q 014658 169 KSLGNFFTIRQITE--------------------------RYHPLALRHFLISAHYRSPLNYSV 206 (421)
Q Consensus 169 KSlGN~i~~~dll~--------------------------~yg~D~lR~~ll~~~~~~d~~fs~ 206 (421)
++.||+|++.|+++ ..|..++||++|+....+++.|+|
T Consensus 291 tR~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 291 TRKGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp TTTTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred CCCCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 99999999999999 567788888888887778887764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=94.21 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=103.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|+.||+ +|+..++.|+|++.+.+++++|+++|+||. .++ . -.|
T Consensus 62 L~wLGl-~~d~~~~qS~r~~~y~~~~~~Li~~G~aY~------------------~~~------~------------~~~ 104 (240)
T cd09287 62 LEWLGV-KWDEVVIASDRIELYYEYARKLIEMGGAYV------------------HPR------T------------GSK 104 (240)
T ss_pred HHHcCC-CCCCccchhccHHHHHHHHHHHHHcCCccc------------------Ccc------c------------CCc
Confidence 467999 588999999999999999999999999997 000 0 125
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV 160 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l 160 (421)
|.+| |..|..| +.-....| ++.-+=|.|++- ....-+.+..+++.++ +.+ .|...+
T Consensus 105 ~~i~------------------ptY~la~-vVDD~~~g--IThViRg~d~~~-~t~~q~~l~~~Lg~~~-P~~-~H~pll 160 (240)
T cd09287 105 YRVW------------------PTLNFAV-AVDDHLLG--VTHVLRGKDHID-NTEKQRYIYEYFGWEY-PET-IHWGRL 160 (240)
T ss_pred EEEE------------------Eccccce-eeeccccC--CCeEEechhhhh-CCHHHHHHHHHcCCCC-CcE-Eeeeee
Confidence 6653 7778754 33233344 444445788443 2223333445665444 445 699999
Q ss_pred eeCCcccccccCC------c---------cCHHHHHH-hcCchHHHHHHhhc-CCCCCcccCHHHHHHHH
Q 014658 161 TNNNEKMSKSLGN------F---------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSAS 213 (421)
Q Consensus 161 ~~~G~KMSKSlGN------~---------i~~~dll~-~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~ 213 (421)
+.+|.||||+.+- . .++..+.+ .|.|++++-|+..- --.++..++++.|....
T Consensus 161 ~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~ 230 (240)
T cd09287 161 KIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAIN 230 (240)
T ss_pred cCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHH
Confidence 9999999999842 1 34445444 58999999888774 33577789998887643
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-09 Score=91.53 Aligned_cols=65 Identities=26% Similarity=0.216 Sum_probs=57.6
Q ss_pred CchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeee-CCccccccc
Q 014658 105 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSL 171 (421)
Q Consensus 105 Whiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSl 171 (421)
||++|++++..+.+...++|++|+|+.+ |+.+..+++++++... +..++|.|+|+. +|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCCCcCCCCC
Confidence 9999999999998888999999999999 9999999999997542 346789999997 569999995
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=80.11 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=69.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-C---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-H---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 279 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~-~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~ 279 (421)
||++.+..+.+.+.++||....+......... . ......+.+++..+..+...+..+| +.+++++|++. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 68889998889999999998865432121111 0 1112345788899999999999999 99999999999 99999
Q ss_pred H--HHHHHHhhhcccC
Q 014658 280 K--FINSSLNMLKKKQ 293 (421)
Q Consensus 280 ~--~~N~yi~~~~pw~ 293 (421)
. .+|+|++..+||.
T Consensus 79 ~~~~~N~Yi~~~~pW~ 94 (135)
T cd07962 79 WNDFCDWYLELVKPRL 94 (135)
T ss_pred HHHHhHHHHHHhhHHH
Confidence 7 7999999999995
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-07 Score=78.83 Aligned_cols=140 Identities=11% Similarity=0.014 Sum_probs=98.2
Q ss_pred hcCchHHHHHHhhcCCCCCcccCHHHHHHHHH--------HHHHHHHHHHHHHHhcC---CcccCCCCCCCChHHHHHHH
Q 014658 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASD--------AVFYIYQTLQDCEVALS---PFQEHGKTARINPAAEDCIN 251 (421)
Q Consensus 183 ~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~--------~l~~l~~~l~~~~~~~~---~~~~~~~~~~~d~~l~~~l~ 251 (421)
..|.|++||++|+....++++|+++.+..... .+.|+.|.++....... .........+.+..++..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 46789999999999999999999998665431 12344444332210000 00000011223455677788
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCch-hhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 252 ~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~-~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
.+.+.+..++ .+.+++.++.. +.++...+|.|++....-.+. .....++..+.++..++..++.+|||.+.
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888888888 89999999999 999999999999977554322 23345788899999999999999999764
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-06 Score=71.15 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHH-HhcCCccc-CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcc
Q 014658 214 DAVFYIYQTLQDCE-VALSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291 (421)
Q Consensus 214 ~~l~~l~~~l~~~~-~~~~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~p 291 (421)
+.++|+.+++..+. .......+ .......+.+++..++++..++.++| ++|++++|++. ++++++.+|+|++..+|
T Consensus 7 ~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-~~~~~~~~n~y~~~~kp 84 (129)
T cd07957 7 NNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAM-EELEFRKALEE-IMELARAANKYIDETAP 84 (129)
T ss_pred hhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHhhhccCCC
Confidence 45566666654332 22222111 11123567899999999999999999 89999999999 99999999999999999
Q ss_pred cCchhh--hhhhHHHHHHHHHHHHHHHhHhc
Q 014658 292 KQPKQQ--QLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 292 w~~~~~--~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
|..... .......+..+...++.++.+|.
T Consensus 85 w~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~ 115 (129)
T cd07957 85 WKLAKEEDPERLATVLYVLLELLRILAILLS 115 (129)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 962211 11122334444455555555555
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-06 Score=76.34 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=89.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 277 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~ 277 (421)
|+.+.+.+..+.+.++||.++++...+..+... ......|++++..++.+..++.++| ++|+++.|++. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 567888888888899999988776554432211 1123467899999999999999999 89999999999 999
Q ss_pred HHH--HHHHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 278 ALK--FINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 278 ~~~--~~N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
|+. .+|.|++..+||.-. ...+.+......+...+..++.+|. |+|- ..+++++.+
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~aeel~~~l 139 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPF-TAEEVWEHL 139 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhh-hHHHHHHhc
Confidence 996 679999999998521 1111122233344556666777777 3454 455555544
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-06 Score=70.04 Aligned_cols=103 Identities=7% Similarity=0.110 Sum_probs=73.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
|+++.+....|.+.|+++.+...................|+++++.+.++.+++.++| ++|++++|++. ++++++.+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHH-HHHHHHHHH
Confidence 5777888888888888887654221111000001223467899999999999999999 89999999999 999999999
Q ss_pred HHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 284 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 284 ~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+|++..+|+ ...+...++.++.+|.
T Consensus 79 ~~~~~~~p~------------~~~~~~~l~~~~~lL~ 103 (117)
T cd07958 79 KYKKKDAQH------------AAVLREALETLVLLLA 103 (117)
T ss_pred Hhhccccch------------HHHHHHHHHHHHHHHc
Confidence 999876652 2234455555555555
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-06 Score=86.49 Aligned_cols=186 Identities=18% Similarity=0.231 Sum_probs=105.4
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEecc--------------CCCCc-cccccccchhh---
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE--------------KSPNY-GRLSGQRLENN--- 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~--------------~~~~Y-g~ls~~~~~~~--- 63 (421)
+-||+..-.-..+-|++++...+++++|+++|+||. .||+. ..+.| |.-.+...++.
T Consensus 61 ~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~g~aY~-----C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~ 135 (470)
T TIGR00464 61 KWLGISWDEGPYYQSQRLDIYKKYAKELLEEGLAYR-----CYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENK 135 (470)
T ss_pred HHCCCCCCCCeeehhCCHHHHHHHHHHHHHcCCEEe-----cCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhH
Confidence 357776322455779999999999999999999994 22211 11223 22111111211
Q ss_pred -hCCCC----cccccc----------------ccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCce
Q 014658 64 -RAGER----VAVDSR----------------KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122 (421)
Q Consensus 64 -~~g~~----v~~~~~----------------K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~D 122 (421)
..|.+ ...+.. -..-.||+|.|. .|.|..|+.| ++-....| ++
T Consensus 136 ~~~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------dG~ptY~~A~-~vdD~~~~--it 199 (470)
T TIGR00464 136 LAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILRS-------------DGSPTYNFAV-VVDDYLMK--IT 199 (470)
T ss_pred HhcCCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEec-------------CCCcccccHH-HHHHHhCC--CC
Confidence 11221 000000 011134555444 3678888754 33233344 55
Q ss_pred EEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh-cCc--------------
Q 014658 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHP-------------- 186 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-yg~-------------- 186 (421)
.-+-|.|++. |...-.+...+++.. .+ .+.|..++. .+|.||||+.| .+++.++.+. |-+
T Consensus 200 hvIrG~d~~~-~t~~~~~l~~aLg~~-~p-~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~ 275 (470)
T TIGR00464 200 HVIRGEDHIS-NTPKQILIYQALGWK-IP-VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSP 275 (470)
T ss_pred EEEECchhhc-CHHHHHHHHHHcCCC-CC-eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCC
Confidence 5558999444 333344445666533 33 447878754 68999999999 8899999886 344
Q ss_pred ----------hHHHHHHhhcCCCCCcccCHHHHHHH
Q 014658 187 ----------LALRHFLISAHYRSPLNYSVLQLDSA 212 (421)
Q Consensus 187 ----------D~lR~~ll~~~~~~d~~fs~e~l~~~ 212 (421)
+++|+|.++..-.+++.|+++.|.-.
T Consensus 276 ~~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~~~ 311 (470)
T TIGR00464 276 PDDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQWL 311 (470)
T ss_pred CCccccCCHHHHHHhcCcccCCCCCCeecHHHHHHH
Confidence 44555555554456677777765443
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.4e-06 Score=67.77 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 207 LQLDSASDAVFYIYQTLQDCEVALSPFQEH---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 207 e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
+.+.+..+.+.++++.+..+.....+..+. ......|.+++..++.+.+++.++| ++|+++.|++. +++|++.+|
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n 79 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELN 79 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhcc
Confidence 345555555556666665544433221111 0113457899999999999999999 89999999999 999999999
Q ss_pred HHHhhhcccC
Q 014658 284 SSLNMLKKKQ 293 (421)
Q Consensus 284 ~yi~~~~pw~ 293 (421)
.|++..+||.
T Consensus 80 ~y~~~~~pw~ 89 (117)
T cd07375 80 WYLDELKPAL 89 (117)
T ss_pred HHHHHhhHHH
Confidence 9999999995
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=67.31 Aligned_cols=103 Identities=11% Similarity=-0.011 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-QDALKFI 282 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l-~~~~~~~ 282 (421)
|+.+.+....+.+.|+++.+....+ ...+.......|++++..++.+..++.++| ++|+++.|++. + +++.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~-~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---TEGELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKE-GLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---ccCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHH
Confidence 5677777666776666665543211 111111223567899999999999999999 89999999999 8 9999999
Q ss_pred HHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 283 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 283 N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
|.|++..+||. ....+...++.++.+|..
T Consensus 76 ~~Y~~~~~~~~----------~~~~~~~~l~~~~~lL~P 104 (117)
T cd07959 76 DWYRERGGAGM----------NKDLLRRFIEVWTRLLAP 104 (117)
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHHHHcC
Confidence 99999888871 112345566666666663
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=86.64 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=125.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC------C----Ccccccccc----chhhhCCC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------P----NYGRLSGQR----LENNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~------~----~Yg~ls~~~----~~~~~~g~ 67 (421)
+-||+. ++...+.|++.+.+.++.++|+++|.||.- |+.... . .|-.++... .+++..|.
T Consensus 71 ~WLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~ 144 (523)
T PLN03233 71 GKIEIK-PDSVSFTSDYFEPIRCYAIILIEEGLAYMD-----DTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGK 144 (523)
T ss_pred HHhCCC-CCCCccccccHHHHHHHHHHHHHcCCeEec-----CCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhccc
Confidence 457887 688889999999999999999999999963 221110 0 111121100 11222221
Q ss_pred --------C--ccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHH
Q 014658 68 --------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 137 (421)
Q Consensus 68 --------~--v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~ 137 (421)
| ++....-.+-.||++.+....-.+..-..| .+.|-.|..| +......| ++.-+=|.|++- +..-
T Consensus 145 ~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~-~VDD~l~g--ITHviRg~E~~~-~t~~ 219 (523)
T PLN03233 145 EEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLAC-PIVDSIEG--VTHALRTTEYDD-RDAQ 219 (523)
T ss_pred ccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCce-eeeccccC--CCeEEechhhhc-CCHH
Confidence 1 111112223369999997543344444556 7889999765 44444444 343344788544 2222
Q ss_pred HHHHHHhccCCCCCcEEEeeeeeeeCCccccccc------CCcc---------CHHHHHH-hcCchHHHHHHhhc-CCCC
Q 014658 138 EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-RYHPLALRHFLISA-HYRS 200 (421)
Q Consensus 138 ~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSl------GN~i---------~~~dll~-~yg~D~lR~~ll~~-~~~~ 200 (421)
-..+..+++.++ +.+ .|-+++.+.|.||||+. .+.| |+..+-. .|.|+++|=|++.. .-..
T Consensus 220 q~~l~~aLg~~~-P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~ 297 (523)
T PLN03233 220 FFWIQKALGLRR-PRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRR 297 (523)
T ss_pred HHHHHHHhCCCC-Cee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 333345565443 444 56788889999999997 3455 4777665 49999999999985 5577
Q ss_pred CcccCHHHHHHHHHH
Q 014658 201 PLNYSVLQLDSASDA 215 (421)
Q Consensus 201 d~~fs~e~l~~~~~~ 215 (421)
+..++++.|....+.
T Consensus 298 ~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 298 VVNLDWAKFWAENKK 312 (523)
T ss_pred CceecHHHHHHHHHH
Confidence 889999999886543
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=83.84 Aligned_cols=203 Identities=18% Similarity=0.088 Sum_probs=122.6
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------------CCCcccccccc-c---hhh
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQR-L---ENN 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------------~~~Yg~ls~~~-~---~~~ 63 (421)
+-||+.+-+-....|+|++.+.+++++|+++|.||.- |+... ...|-.+|... + +++
T Consensus 89 ~wLGi~~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c-----~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m 163 (554)
T PRK05347 89 RWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVD-----DLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERM 163 (554)
T ss_pred HHcCCCCCCCceeeecCHHHHHHHHHHHHHcCCEeeC-----CCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHH
Confidence 4588875466778899999999999999999999962 22110 01122222111 1 224
Q ss_pred hCCCC--------ccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc
Q 014658 64 RAGER--------VAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 133 (421)
Q Consensus 64 ~~g~~--------v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p 133 (421)
..|.. ...+-.-.|+ +|+++.+....-+|.=-+.| .+.|-.|..| +...+..| ++.-+-|.|++-
T Consensus 164 ~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-~iyPtYdfA~-~vdD~l~g--ITHvlRg~E~~~- 238 (554)
T PRK05347 164 RAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-CIYPMYDFAH-CISDAIEG--ITHSLCTLEFED- 238 (554)
T ss_pred HCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-eeecCcCccc-eeeccccC--CceEEecccccc-
Confidence 45531 1112122344 69999886422122101222 3578888765 34444554 333333677332
Q ss_pred chHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCC-------c--------cCHHHHHH-hcCchHHHHHHhhc-
Q 014658 134 HHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN-------F--------FTIRQITE-RYHPLALRHFLISA- 196 (421)
Q Consensus 134 H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN-------~--------i~~~dll~-~yg~D~lR~~ll~~- 196 (421)
|..--..+..+++....+.+ .+-||+.++|.||||+.+. + .|+..+.. .|.|+++|=|++..
T Consensus 239 ~t~~~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG 317 (554)
T PRK05347 239 HRPLYDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIG 317 (554)
T ss_pred ChHHHHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhC
Confidence 23333344566754433545 4668999999999999965 2 26777765 59999999999885
Q ss_pred CCCCCcccCHHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDA 215 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~ 215 (421)
--..+..++++.|....+.
T Consensus 318 ~s~~~~~i~~~~L~~~nRk 336 (554)
T PRK05347 318 VTKQDSVIDMSMLESCIRE 336 (554)
T ss_pred CCCCCCeecHHHHHHHHHH
Confidence 3466789999999876543
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.5e-06 Score=88.36 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=117.4
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC---------CC-Cccccccc-cc---hhhhCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYGRLSGQ-RL---ENNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~---------~~-~Yg~ls~~-~~---~~~~~g 66 (421)
|+.|||. |+.++++|+|++.+.+++++|+++|+||.- |+... .+ .+-.++.. ++ ++|..|
T Consensus 152 L~wLGi~-~d~~~~qSd~~~~y~~~a~~Li~~G~AY~C-----~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g 225 (560)
T TIGR00463 152 LDWLGVK-GDEVVYQSDRIEEYYDYCRKLIEMGKAYVC-----DCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNG 225 (560)
T ss_pred HHHcCCC-CCccccccccHHHHHHHHHHHHHcCCceee-----cCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcc
Confidence 3568998 799999999999999999999999999962 11100 00 01112211 11 123333
Q ss_pred C--------Cccccc--cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchH
Q 014658 67 E--------RVAVDS--RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 136 (421)
Q Consensus 67 ~--------~v~~~~--~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~ 136 (421)
. |+..+. .-..-+||++++....-++.--..| .+.|..|..| +.-....| ++.-+=|.|++-
T Consensus 226 ~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~-~VDD~l~g--ITHviRg~E~~~---- 297 (560)
T TIGR00463 226 TEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSV-PIDDHLLG--VTHVLRGKDHID---- 297 (560)
T ss_pred cccCCCeEEEEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccce-EeecccCC--CCeEEechhhhc----
Confidence 2 111111 1112269999986432222111222 3678888766 44444555 333344788554
Q ss_pred HHHHHH---HhccCCCCCcEEEeeeeeeeC-CcccccccC-------Cc--------cCHHHHHH-hcCchHHHHHHhhc
Q 014658 137 NEIAQS---CAACQDSNVSYWMHNGHVTNN-NEKMSKSLG-------NF--------FTIRQITE-RYHPLALRHFLISA 196 (421)
Q Consensus 137 ~~~a~~---~a~~~~~~~~~~~h~g~l~~~-G~KMSKSlG-------N~--------i~~~dll~-~yg~D~lR~~ll~~ 196 (421)
+.+.|. .+++.. .+.+ .|.+++..+ |.|+|||.+ -+ .|+..+-. .|.|+++|=|++..
T Consensus 298 nT~rq~yl~~~lg~~-~P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~ 375 (560)
T TIGR00463 298 NERKQQYIYMYFGWE-LPEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSI 375 (560)
T ss_pred CCHHHHHHHHHcCCC-CCeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 333332 233333 3445 789999875 569998762 11 23444443 58999999999985
Q ss_pred -CCCCCcccCHHHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~ 214 (421)
.-..+..++++.|....+
T Consensus 376 G~s~~~~~i~~~~l~~~nr 394 (560)
T TIGR00463 376 GVKRNDVNLSWKNIYAFNK 394 (560)
T ss_pred CCCCCCceeeHHHHHHHHH
Confidence 446788999999987654
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.24 E-value=5e-06 Score=62.04 Aligned_cols=57 Identities=33% Similarity=0.514 Sum_probs=42.0
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 256 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 256 ~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
+|.++|+|||||+.|++. |+++++.+|+...... ...+..+...+..+..||||...
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~~~~-----------~~~~~~~~~~l~~~~~vLGl~~~ 57 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALESND-----------KEDLEALAAALRKLLDVLGLLQE 57 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcccCC-----------HHHHHHHHHHHHHHHhcCcCCCC
Confidence 478999999999999999 9999999999332221 23345567888889999999654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A. |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=86.35 Aligned_cols=202 Identities=18% Similarity=0.050 Sum_probs=122.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEecc--------------CCCCcccccccc-c---hhh
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE--------------KSPNYGRLSGQR-L---ENN 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~--------------~~~~Yg~ls~~~-~---~~~ 63 (421)
+-||+..+......|+|.+.+.++.++|+++|.||.- |+.. .-..|-.+|... + +.+
T Consensus 91 ~wLG~~wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c-----~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m 165 (771)
T PRK14703 91 RWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVD-----SVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRM 165 (771)
T ss_pred HHcCCCCCCCceEeecCHHHHHHHHHHHHHcCCcccC-----cCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4588886555678999999999999999999999962 2110 011232233211 1 124
Q ss_pred hCCCC--------ccccccccC--CCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc
Q 014658 64 RAGER--------VAVDSRKRN--PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 133 (421)
Q Consensus 64 ~~g~~--------v~~~~~K~~--p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p 133 (421)
..|.- ...+-...| -+|+++++....-.|..-..| .+.|-.|..| ++..+..| ++.-+-|.|+.-
T Consensus 166 ~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~-~i~PtYdfa~-~vdD~l~g--ITHvlRg~E~~~- 240 (771)
T PRK14703 166 RAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEW-CIYPMYDFAH-PLEDAIEG--VTHSICTLEFEN- 240 (771)
T ss_pred hCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCC-CcCCCccccc-eeeccccC--CcEEEecHhhhh-
Confidence 44431 111222233 369999996432233211222 2578888755 44444554 343344788432
Q ss_pred chHHHHHHHHhccCCCC-CcEEEeeeeeeeCCccccccc-------CCc--------cCHHHHHH-hcCchHHHHHHhhc
Q 014658 134 HHENEIAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA 196 (421)
Q Consensus 134 H~~~~~a~~~a~~~~~~-~~~~~h~g~l~~~G~KMSKSl-------GN~--------i~~~dll~-~yg~D~lR~~ll~~ 196 (421)
+..--..+..++++.++ +.+ .+.|++.+.|.||||++ |-+ -|+..+.. .|.|+++|=|++..
T Consensus 241 ~~~~~~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~l 319 (771)
T PRK14703 241 NRAIYDWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQI 319 (771)
T ss_pred ccHHHHHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHh
Confidence 12222233456655433 556 46799999999999998 332 14666655 59999999999885
Q ss_pred -CCCCCcccCHHHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~ 214 (421)
--..+..++++.|....+
T Consensus 320 G~s~~~~~i~~~~L~~~~R 338 (771)
T PRK14703 320 GVAKTNSTVDIGVLEFAIR 338 (771)
T ss_pred CCCccCceecHHHHHHHHH
Confidence 446788999999987654
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-05 Score=80.19 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=56.6
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHH---HHhccCCCCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~---~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
.|-|..|.-+ +...+..| ++.-+-|.| |+.+.+-| ..+++.++ ++ +.|..++. .+|.||||+.| .+
T Consensus 190 DG~ptY~~a~-vVdD~~~~--ithvIrG~d----~~~~t~~q~~l~~alG~~~-p~-~~H~pli~~~~g~klSKR~g-~~ 259 (476)
T PRK01406 190 DGTPTYNFAV-VVDDHLMG--ITHVIRGED----HLSNTPKQILLYEALGWEV-PV-FAHLPLILGPDGKKLSKRHG-AT 259 (476)
T ss_pred CCCccccchH-HHHHHHcC--CCEEEECch----hhcCHHHHHHHHHHhCCCC-Ce-EEEeeeeeCCCCCcccCcCC-cc
Confidence 4677788643 44555665 344457899 55555544 45565433 44 48888864 68999999999 78
Q ss_pred CHHHHHHh-cCchHHHHHHhh
Q 014658 176 TIRQITER-YHPLALRHFLIS 195 (421)
Q Consensus 176 ~~~dll~~-yg~D~lR~~ll~ 195 (421)
++.++.+. |-+.+++-|+..
T Consensus 260 ~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 260 SVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred CHHHHHHCCCCHHHHHHHHHH
Confidence 99999875 456555555543
|
|
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-05 Score=81.99 Aligned_cols=201 Identities=12% Similarity=0.063 Sum_probs=118.2
Q ss_pred CCCCCCCCCc-cccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------CCCccccccc-cc---hhhhCC
Q 014658 2 ADLQCLPPTY-QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQ-RL---ENNRAG 66 (421)
Q Consensus 2 ~~Lnv~~p~~-~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------~~~Yg~ls~~-~~---~~~~~g 66 (421)
+-||+. ++- ....|++.+.+.+++++|+++|.||. +|+... -..|-.++.. ++ +.+..|
T Consensus 112 ~WLGl~-wDe~~~~QSdr~d~y~e~a~~Li~~G~AY~-----c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g 185 (601)
T PTZ00402 112 ATLGVS-WDVGPTYSSDYMDLMYEKAEELIKKGLAYC-----DKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKG 185 (601)
T ss_pred HHCCCC-CCCceeeccccHHHHHHHHHHHHHcCCEEE-----ecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcccc
Confidence 458886 453 56889999999999999999999993 343311 0123222211 01 112222
Q ss_pred CC--------cccc--ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchH
Q 014658 67 ER--------VAVD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 136 (421)
Q Consensus 67 ~~--------v~~~--~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~ 136 (421)
.. ...+ +.-.+-+||++.+....-.+.--..| .|.|-.|..| +......| ++.-+=|.|++- |..
T Consensus 186 ~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~-dgyPtYdfA~-vVDD~l~g--ITHvlRg~E~l~-~tp 260 (601)
T PTZ00402 186 SAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKY-KAYPTYDFCC-PIIDSVEG--VTHALRTNEYHD-RND 260 (601)
T ss_pred ccCCCceEEEEecccCCCCCCccCCEEEEEcCCcccccCCCC-ceeeccCcce-eeEccccC--CceEeechhhhh-CcH
Confidence 21 0011 11123369999885422112111222 6888888765 33344444 343344788443 333
Q ss_pred HHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHH-HhcCchHHHHHHhhc-CCC
Q 014658 137 NEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT-ERYHPLALRHFLISA-HYR 199 (421)
Q Consensus 137 ~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll-~~yg~D~lR~~ll~~-~~~ 199 (421)
--..+..+++..+ +.+ .|.+.++.+|.||||+.+.- .|+.-|. ..|.++++|=||... --.
T Consensus 261 ~q~~L~~aLg~~~-P~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk 338 (601)
T PTZ00402 261 QYYWFCDALGIRK-PIV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSK 338 (601)
T ss_pred HHHHHHHHhCCCC-ceE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 3333445565443 434 78898889999999998852 1222222 369999999999885 447
Q ss_pred CCcccCHHHHHHHHHH
Q 014658 200 SPLNYSVLQLDSASDA 215 (421)
Q Consensus 200 ~d~~fs~e~l~~~~~~ 215 (421)
++..|+++.|....+.
T Consensus 339 ~~~~~d~~~L~~~nr~ 354 (601)
T PTZ00402 339 TVNFMEWSKLWYFNTQ 354 (601)
T ss_pred CCcccCHHHHHHHHHH
Confidence 8889999999876543
|
|
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.4e-05 Score=67.85 Aligned_cols=127 Identities=11% Similarity=0.125 Sum_probs=83.9
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHH--hcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 204 YSVLQLDSASD-AVFYIYQTLQDCEV--ALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 204 fs~e~l~~~~~-~l~~l~~~l~~~~~--~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
||++.++.+.+ .+.+|||+++++.+ ......+. ......|+|++.+++.+..++.++| ++|+++.|++.
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~- 78 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRA- 78 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-
Confidence 68889998887 78899999887643 22221111 1124578999999999999999999 89999999999
Q ss_pred HHHHHHHH-HHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhcc-CCCCChHHHHHHH
Q 014658 275 FQDALKFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQL 334 (421)
Q Consensus 275 l~~~~~~~-N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilGi-~~~~~~~~~~~~~ 334 (421)
+++|+... +.|++..++ |.... ...+......+...+..++.+|.. +|- ..+++++.+
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~~-~~~~~~~~~~l~~~l~~ll~ll~P~~P~-~aEElw~~l 140 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPF-ITEEIYQNL 140 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHh
Confidence 99999865 778887553 43111 111122333455666666676663 332 334444433
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.8e-05 Score=77.76 Aligned_cols=182 Identities=15% Similarity=0.208 Sum_probs=105.7
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------------CCCc-cccccccchh-hhC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY-GRLSGQRLEN-NRA 65 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------------~~~Y-g~ls~~~~~~-~~~ 65 (421)
+-||+. +|-..+-|++++...+++++|+++|.||. .||+.. -+.| |.-.+...++ +..
T Consensus 59 ~WlGl~-wDe~y~QSeR~~~Y~~~a~~Li~~G~AY~-----C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~ 132 (433)
T PRK12410 59 NLFGIS-WDKLVYQSENLKFHRQMAEKLLSEKKAFA-----CFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNC 132 (433)
T ss_pred HHcCCC-CCCCeehhccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhc
Confidence 457886 46667889999999999999999999994 121110 1122 1111111111 111
Q ss_pred CCC----ccccc---------------cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEee
Q 014658 66 GER----VAVDS---------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 126 (421)
Q Consensus 66 g~~----v~~~~---------------~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~g 126 (421)
|.+ ..++. .=..-.||+++|. .|.|-.|..| +.=.+..| ++.-+=
T Consensus 133 g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~PtY~fA~-vVDD~~mg--IThViR 196 (433)
T PRK12410 133 NKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRA-------------DKTPTYNFAC-AVDDMLYD--ISLIIR 196 (433)
T ss_pred CCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcC-------------CCCccccccc-hhchhhcC--CCEEEe
Confidence 111 00000 0011125555554 4667888754 33334444 343344
Q ss_pred cccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhcCC-CC
Q 014658 127 GIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY-RS 200 (421)
Q Consensus 127 G~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~~~-~~ 200 (421)
|.| |..+.+.|. .|++-++|+ .|.|..+++ .+|.||||+.|. +++.++.+ .|.|++++=|++.-.+ ..
T Consensus 197 G~d----~l~~tp~Qi~Ly~aLg~~~pp-~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~ 270 (433)
T PRK12410 197 GED----HVSNTPKQILIREALGYNKEI-TYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTP 270 (433)
T ss_pred chh----hhhCcHHHHHHHHHcCCCCCC-eEEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCc
Confidence 799 666666664 555544434 458999775 799999999986 56777765 5999999998877322 11
Q ss_pred CcccCHHHHHH
Q 014658 201 PLNYSVLQLDS 211 (421)
Q Consensus 201 d~~fs~e~l~~ 211 (421)
+--|+.+.+.+
T Consensus 271 ~e~~~~~eli~ 281 (433)
T PRK12410 271 KEIFTLEEAIE 281 (433)
T ss_pred ccccCHHHHHH
Confidence 33355555443
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.4e-05 Score=71.09 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=60.3
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee-eeCCcccccccCCccCHH
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIR 178 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~ 178 (421)
.|.|..|..+++ -....| ++.-+=|.|++- |..--.+...+++.++ +.+ .|...+ ..+|.|||||.|+ .++.
T Consensus 101 dg~ptY~~a~~v-DD~~~~--ithViRG~D~~~-~t~~q~~l~~aLg~~~-p~~-~h~pll~~~~g~KLSKR~~~-~~l~ 173 (239)
T cd00808 101 DGFPTYHLANVV-DDHLMG--ITHVIRGEEHLS-STPKQILLYEALGWEP-PKF-AHLPLILNPDGKKLSKRKGD-TSIS 173 (239)
T ss_pred CCCcccccHHHH-hHHhcC--CCEEEEChhhhh-ChHHHHHHHHHcCCCC-Cce-EeeccccCCCCCcccCCCCC-ccHH
Confidence 588889986543 223344 455566899332 2333344445665443 444 677876 5799999999999 6777
Q ss_pred HHHH-hcCchHHHHHHhhc
Q 014658 179 QITE-RYHPLALRHFLISA 196 (421)
Q Consensus 179 dll~-~yg~D~lR~~ll~~ 196 (421)
.+.+ .+.+.+++.|++.-
T Consensus 174 ~lr~~G~~p~ai~~~l~~l 192 (239)
T cd00808 174 DYREEGYLPEALLNYLALL 192 (239)
T ss_pred HHHHCCCCHHHHHHHHHHc
Confidence 7765 58999999999874
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.3e-05 Score=81.30 Aligned_cols=201 Identities=16% Similarity=0.134 Sum_probs=123.5
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--CCCc-cccccccch-------hhhCCC----
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNY-GRLSGQRLE-------NNRAGE---- 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--~~~Y-g~ls~~~~~-------~~~~g~---- 67 (421)
+-||+. ++...+.|++++.+.+++++|+++|.||.-.-+. =.+.. ...| |.-.++..+ +|..|.
T Consensus 273 ~wLG~~-~d~~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~-~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~ 350 (722)
T PLN02907 273 ETLGIK-YDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPR-EQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGL 350 (722)
T ss_pred HHcCCC-CCCcccccccHHHHHHHHHHHHHcCCeeecCCCH-HHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCC
Confidence 458887 5788899999999999999999999999632100 00000 0112 111111222 233333
Q ss_pred ----CccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHH
Q 014658 68 ----RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 141 (421)
Q Consensus 68 ----~v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~ 141 (421)
|...+-.-.|+ +||++-+....-++.+-..| .+.|-.|..| +...+..| ++.-+=|.| |..+.+-|
T Consensus 351 ~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~-~vdD~~~g--IThvlRg~e----~~~~t~~q 422 (722)
T PLN02907 351 QCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFAC-PFVDALEG--VTHALRSSE----YHDRNAQY 422 (722)
T ss_pred CeEEEEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCce-EEEcccCC--CceEeecHh----hhhChHHH
Confidence 12222112222 69999887543345555666 7889999866 34344444 333344688 44443333
Q ss_pred ---HHhccCCCCCcEEEeeeeeeeCCccccccc-------CCc--------cCHHHHHH-hcCchHHHHHHhhc-CCCCC
Q 014658 142 ---SCAACQDSNVSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA-HYRSP 201 (421)
Q Consensus 142 ---~~a~~~~~~~~~~~h~g~l~~~G~KMSKSl-------GN~--------i~~~dll~-~yg~D~lR~~ll~~-~~~~d 201 (421)
..+++.++ +.+ .|.|++.++|.||||++ |-+ -|+..+.. .|.++++|=|++.. .-.++
T Consensus 423 ~~l~~~lg~~~-p~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~ 500 (722)
T PLN02907 423 YRILEDMGLRK-VHI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNL 500 (722)
T ss_pred HHHHHHcCCCC-Cee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCC
Confidence 35555443 345 56689999999999998 322 24556544 49999999999885 45778
Q ss_pred cccCHHHHHHHHH
Q 014658 202 LNYSVLQLDSASD 214 (421)
Q Consensus 202 ~~fs~e~l~~~~~ 214 (421)
..|+++.|....+
T Consensus 501 ~~~~~~~l~~~nr 513 (722)
T PLN02907 501 NLMEWDKLWTINK 513 (722)
T ss_pred ccccHHHHHHHHH
Confidence 8999999987654
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.3e-05 Score=71.31 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=98.2
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
+.||+. +|-..+-|++++...+++++|+++|.||.. .+ .| .+|
T Consensus 61 ~wlGl~-wD~~~~QS~r~~~Y~~~~~~L~~~g~aY~~------------------~~------~~------------~~~ 103 (238)
T cd00807 61 KWLGIK-PYKVTYASDYFDQLYEYAEQLIKKGKAYVH------------------HR------TG------------DKW 103 (238)
T ss_pred HHcCCC-CCCceecccCHHHHHHHHHHHHHcCCeecC------------------CC------CC------------CCE
Confidence 457886 566667899999999999999999999980 00 00 133
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeee
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNG 158 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g 158 (421)
.+ +|..|..| +.-....| ++.-+=|.|+ ..+.+.|. .+++.++ +.+ +|.+
T Consensus 104 ~i------------------~ptY~lA~-vVDD~~~g--IThVvRG~D~----l~~t~~Q~~l~~aLg~~~-P~~-~~~~ 156 (238)
T cd00807 104 CI------------------YPTYDFAH-PIVDSIEG--ITHSLCTLEF----EDRRPSYYWLCDALRLYR-PHQ-WEFS 156 (238)
T ss_pred EE------------------Eeccccce-EeeccccC--CCeEEechhh----hcCCHHHHHHHHHcCCCC-Cce-eEEE
Confidence 33 37778754 33333444 4444457994 44444443 5555444 444 3558
Q ss_pred eeeeCCcccccccCC------cc---------CHHHHHH-hcCchHHHHHHhhc-CCCCCcccCHHHHHHHH
Q 014658 159 HVTNNNEKMSKSLGN------FF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSAS 213 (421)
Q Consensus 159 ~l~~~G~KMSKSlGN------~i---------~~~dll~-~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~ 213 (421)
|+..+|.||||+.+- .+ ++..+.. .|.|++++=|++.- --.++..|+++.|....
T Consensus 157 hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~n 228 (238)
T cd00807 157 RLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACV 228 (238)
T ss_pred EECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Confidence 889999999999852 12 2344433 58999999999874 44788999999887543
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.9e-05 Score=69.96 Aligned_cols=87 Identities=24% Similarity=0.264 Sum_probs=59.5
Q ss_pred CCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeeee-CCcccccccCCccC
Q 014658 101 GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFT 176 (421)
Q Consensus 101 grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~ 176 (421)
|.|..|..| +.-....| ++.-+=|.| |..+.+.|. .+++. +.+.+ .|...++. +|.|||||.|+ ++
T Consensus 93 g~p~Y~la~-vvDD~~~g--IThViRG~D----~l~st~~q~~l~~~Lg~-~~P~~-~H~pll~~~~g~KLSKr~~~-~~ 162 (230)
T cd00418 93 GYPLYNFVH-PVDDALMG--ITHVLRGED----HLDNTPIQDWLYEALGW-EPPRF-YHFPRLLLEDGTKLSKRKLN-TT 162 (230)
T ss_pred CCccccccc-cccccccC--CCEEEECHh----hhhchHHHHHHHHHcCC-CCCeE-EEeeeeeCCCCCCccCcCCC-cC
Confidence 778888754 33344444 454455799 444444443 45544 33445 89898874 77999999998 67
Q ss_pred HHHHHH-hcCchHHHHHHhhcC
Q 014658 177 IRQITE-RYHPLALRHFLISAH 197 (421)
Q Consensus 177 ~~dll~-~yg~D~lR~~ll~~~ 197 (421)
+.++.+ .|.+++++-|+..-.
T Consensus 163 i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 163 LRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred HHHHHHCCCcHHHHHHHHHHcC
Confidence 877765 499999999987643
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=56.41 Aligned_cols=54 Identities=28% Similarity=0.350 Sum_probs=41.4
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 257 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 257 v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
|.++|+||||++.|+.. ++++++.+|.+++... . ...+..+...+..++.+||+
T Consensus 2 f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~--~--------~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAV-LFELAREINRLLLKAV--D--------AEELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHH-HHHHHHHHHHHhhccc--C--------HHHHHHHHHHHHHHHhccCC
Confidence 67899999999999999 9999999999885321 0 11234455667778888886
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=73.84 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
.|-|..|..+. .-....| ++--+-|.| |+.+.+-|. .|++. +.+ .+.|..+|+ .+|.||||+.|..
T Consensus 179 DG~ptY~~a~v-VDD~~m~--ithVIRG~d----~~~~t~~q~~l~~aLG~-~~p-~~~H~plv~~~~g~KLSKR~g~~- 248 (513)
T PRK14895 179 DGTATYMLAVV-VDDHDMG--ITHIIRGDD----HLTNAARQLAIYQAFGY-AVP-SMTHIPLIHGADGAKLSKRHGAL- 248 (513)
T ss_pred CCCcchhhHHH-HHHHhcC--CCEEEECch----HhhhHHHHHHHHHHcCC-CCC-eEEEEEeEEcCCCCccccccCch-
Confidence 46688887543 2233344 454447899 666666655 44543 334 458999998 8999999999984
Q ss_pred CHHHHHH-hcCchHHHHHHhh-c-CCCCCcccCHHHHHH
Q 014658 176 TIRQITE-RYHPLALRHFLIS-A-HYRSPLNYSVLQLDS 211 (421)
Q Consensus 176 ~~~dll~-~yg~D~lR~~ll~-~-~~~~d~~fs~e~l~~ 211 (421)
.+.++.+ .|-|++++=|++. + ++...--||.+.+.+
T Consensus 249 ~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 249 GIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred hHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 6667665 5999999988875 3 344334577776654
|
|
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.1e-05 Score=76.42 Aligned_cols=183 Identities=19% Similarity=0.226 Sum_probs=110.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------------CCCccc----cccccch-
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGR----LSGQRLE- 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------------~~~Yg~----ls~~~~~- 61 (421)
|+.|||. +|...+-|+.++.+.+++++|+++|+||.- ||+.. .+.|.. |+.....
T Consensus 61 L~wLGI~-~De~y~QSer~~~y~~~~e~L~e~G~AY~C-----~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~ 134 (445)
T PRK12558 61 LKWLGIN-WDRTFRQSDRFDRYDEAAEKLKAAGRLYPC-----YETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAA 134 (445)
T ss_pred HHHcCCC-CCccccHHHHHHHHHHHHHHHHHCCCEEEe-----cCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHh
Confidence 4578997 688889999999999999999999999941 21111 112221 1111000
Q ss_pred hhhCCCCc----cccc---------------cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCce
Q 014658 62 NNRAGERV----AVDS---------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122 (421)
Q Consensus 62 ~~~~g~~v----~~~~---------------~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~D 122 (421)
....|.+. .+.. .-..-.||++.|. .|.|..|..|+ .-.+..| ++
T Consensus 135 ~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~-------------dg~PtY~fA~v-VDD~~m~--IT 198 (445)
T PRK12558 135 LEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRA-------------DGSYLYTLPSV-VDDIDMG--IT 198 (445)
T ss_pred HHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEec-------------CCCccccccce-eccccCC--CC
Confidence 01112110 0000 0001235555553 36688998653 2233333 44
Q ss_pred EEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhh-c
Q 014658 123 IHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLIS-A 196 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~-~ 196 (421)
.-+=|.| |..+.+-|. .|++-++ + .|.|..+++ .+|.|+||+.|. +++.++.+ .|-|++++=|++. +
T Consensus 199 HViRG~d----~l~~t~~q~~l~~alg~~~-P-~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 199 HIIRGED----HVTNTAVQIQIFEALGAKP-P-VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred EEEechh----hhhCCHHHHHHHHHhCCCC-C-eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc
Confidence 3444799 666666654 4554444 3 458999988 489999999986 67877776 5999999988876 3
Q ss_pred -CCCCCcccCHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSA 212 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~ 212 (421)
++..+--||.+.+.+.
T Consensus 272 ~s~~~~e~~~~~eli~~ 288 (445)
T PRK12558 272 TSDPVEPYTSMEELAES 288 (445)
T ss_pred CCCCCcccCCHHHHHHh
Confidence 4444444687776553
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0004 Score=72.51 Aligned_cols=199 Identities=17% Similarity=0.122 Sum_probs=110.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------CC----Ccccccccc-c---hhh
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SP----NYGRLSGQR-L---ENN 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------~~----~Yg~ls~~~-~---~~~ 63 (421)
+-||+.+-+.....|+|.+.+-+++++|+++|.||.- |+... .+ .|-.+|... + ++|
T Consensus 60 ~wLG~~~d~~~~~qS~~~~~~~~~a~~Li~~G~AY~c-----~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m 134 (522)
T TIGR00440 60 EWLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVD-----ELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKM 134 (522)
T ss_pred HHcCCCCCCCceEccccHHHHHHHHHHHHHcCCEEee-----cCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHH
Confidence 4588875456678999999999999999999999963 22110 01 122222111 1 234
Q ss_pred hCCCC--------ccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc
Q 014658 64 RAGER--------VAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 133 (421)
Q Consensus 64 ~~g~~--------v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p 133 (421)
..|.. ...+..-.|+ +|+++.+-.....+-=-..| .+.|-.|..| +...+..| ++.-+-|.|
T Consensus 135 ~~G~~~~g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~-~iyPtYdfa~-~vdD~l~g--ITHviRg~E---- 206 (522)
T TIGR00440 135 RDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKW-CIYPMYDFTH-CISDAMEN--ITHSLCTLE---- 206 (522)
T ss_pred hcCcccCCCeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCe-eEEeCcCCce-eehhccCC--CceEeecHh----
Confidence 44431 1111111122 46666554322111000112 2377777654 44444554 333334677
Q ss_pred chHHHH---HHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchHHHHHHh
Q 014658 134 HHENEI---AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLI 194 (421)
Q Consensus 134 H~~~~~---a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll~-~yg~D~lR~~ll 194 (421)
|..+-+ ++...+.....+++ .+.+++.++|.||||+.+.. .|+..+.+ .|.|+++|=|++
T Consensus 207 ~~~nt~~Y~~~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~ 285 (522)
T TIGR00440 207 FQDNRRLYDWVLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCN 285 (522)
T ss_pred hhhcHHHHHHHHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHH
Confidence 433331 22222222212445 36688999999999999875 47788776 599999999998
Q ss_pred hcCCC-CCcccCHHHHHHHHH
Q 014658 195 SAHYR-SPLNYSVLQLDSASD 214 (421)
Q Consensus 195 ~~~~~-~d~~fs~e~l~~~~~ 214 (421)
...+. .+...++..+.+..+
T Consensus 286 ~lG~s~~~~~~e~~~l~~~~r 306 (522)
T TIGR00440 286 RIGVTKQDNNIEVVRLESCIR 306 (522)
T ss_pred HhCCCCCCCceehhhHHHHHH
Confidence 85443 334456666766543
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00041 Score=72.47 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=66.6
Q ss_pred CCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccC
Q 014658 101 GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFT 176 (421)
Q Consensus 101 grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~ 176 (421)
|.|..|..|+ .-.+..| ++.-+=|.| |..+.+-|. .|++-++| .|.|..+++ .+|.||||+.|. ++
T Consensus 233 G~PtY~fA~v-VDD~~mg--ITHViRG~D----~l~nTpkQi~ly~aLg~~~P--~f~Hlpli~~~~g~KLSKR~~~-~~ 302 (535)
T PLN02627 233 GQPVYNFCVA-VDDATMG--ITHVIRAEE----HLPNTLRQALIYKALGFPMP--RFAHVSLILAPDRSKLSKRHGA-TS 302 (535)
T ss_pred CCccccccce-ecccccC--CcEEEechh----hhcChHHHHHHHHHcCCCCC--eEEEccceeCCCCCccccccCC-cc
Confidence 5778887653 3233444 443344799 666666665 45544444 458999987 588999999876 57
Q ss_pred HHHHHH-hcCchHHHHHHhhcCC--C-CCcccCHHHHHH
Q 014658 177 IRQITE-RYHPLALRHFLISAHY--R-SPLNYSVLQLDS 211 (421)
Q Consensus 177 ~~dll~-~yg~D~lR~~ll~~~~--~-~d~~fs~e~l~~ 211 (421)
+.++.+ .|-|++++=|++.-.+ . .+--|+.+.+.+
T Consensus 303 v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli~ 341 (535)
T PLN02627 303 VGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVE 341 (535)
T ss_pred HHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHHH
Confidence 777776 5999999988876433 2 233477666554
|
|
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00029 Score=73.77 Aligned_cols=193 Identities=19% Similarity=0.200 Sum_probs=115.3
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------CCCccccccc-cc---hhhhCCC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQ-RL---ENNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------~~~Yg~ls~~-~~---~~~~~g~ 67 (421)
+-||+. ++..+..|+|++.+-+++.+|+++|.||.- |+... ...|-.++.. +| ++|..|.
T Consensus 111 ~wLGi~-~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C-----~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g~ 184 (574)
T PTZ00437 111 KWMGWK-PDWVTFSSDYFDQLHEFAVQLIKDGKAYVD-----HSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGR 184 (574)
T ss_pred HHcCCC-CCCCCcCchhHHHHHHHHHHHHHcCCEEEc-----CCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhcc
Confidence 458887 577889999999999999999999999962 22111 0112222211 11 2334442
Q ss_pred C--------ccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC-----
Q 014658 68 R--------VAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF----- 132 (421)
Q Consensus 68 ~--------v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~----- 132 (421)
. +..+-.-.|| +|+++..-....+|.=-.+| .+.|-.|..| ++|=|..|+-++.
T Consensus 185 ~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~Ef 253 (574)
T PTZ00437 185 YAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLEF 253 (574)
T ss_pred cccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeechh
Confidence 1 1112222233 47776653222222211444 6778888766 2333444554332
Q ss_pred -cc--hHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchHHHHHH
Q 014658 133 -PH--HENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFL 193 (421)
Q Consensus 133 -pH--~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll~-~yg~D~lR~~l 193 (421)
.+ -.+|+. ..+.... +.. .+.+-++++|.|||||+... .|+..+.. .|.|+++|=|+
T Consensus 254 ~~r~~~y~wl~--~~l~l~~-p~~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~ 329 (574)
T PTZ00437 254 ETRRESYFWLL--EELNLWR-PHV-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFC 329 (574)
T ss_pred hcccHHHHHHH--HHhCCcc-cce-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHH
Confidence 11 122443 4443322 224 46688999999999999884 46666665 49999999999
Q ss_pred hhcC-CCCCcccCHHHHHHHHHH
Q 014658 194 ISAH-YRSPLNYSVLQLDSASDA 215 (421)
Q Consensus 194 l~~~-~~~d~~fs~e~l~~~~~~ 215 (421)
+... -.++..++++.|....+.
T Consensus 330 ~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 330 ELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHhCCCccceEeeHHHHHHHHHH
Confidence 9854 467889999999876543
|
|
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=67.73 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=92.3
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC------------CCCc-cccccccchhhhC-CC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNY-GRLSGQRLENNRA-GE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~------------~~~Y-g~ls~~~~~~~~~-g~ 67 (421)
+.||+..-.-..+-|++++...+++++|+++|.||.- |++.. .+.| |.-.+...++... --
T Consensus 65 ~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C-----~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~i 139 (299)
T PRK05710 65 EWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPC-----FCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAW 139 (299)
T ss_pred HHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCceec-----CCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceE
Confidence 4578874323556799999999999999999999951 11100 0111 1100010100000 00
Q ss_pred Ccccc---------------cc-ccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCc
Q 014658 68 RVAVD---------------SR-KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 131 (421)
Q Consensus 68 ~v~~~---------------~~-K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli 131 (421)
|..++ .. ...-.||+|++. .|.|..|+.| +.-....| ++--+=|.|
T Consensus 140 Rlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~-------------dg~ptY~lA~-vVDD~~~g--IThVvRG~D-- 201 (299)
T PRK05710 140 RLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRA-------------DGLFAYQLAV-VVDDALQG--VTHVVRGAD-- 201 (299)
T ss_pred EEEcCCCceEEEEecceeEeeCCCCCCCCEEEEec-------------CCCccccchh-HHhcccCC--CCEEEeChh--
Confidence 10000 01 113368888876 3668888755 33344555 443444799
Q ss_pred CcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 132 FPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 132 ~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
|..+.+.|. .+++.++ + .+.|+..++ .+|+||||+.|.. .+.+ ..|.+. +..|+..
T Consensus 202 --~l~~t~~Q~~l~~aLg~~~-P-~y~H~pll~~~~g~kLSKr~~~~-~i~~--~g~~p~-l~~~l~~ 261 (299)
T PRK05710 202 --LLDSTPRQIYLQQLLGLPT-P-RYLHLPLVLNADGQKLSKQNGAP-ALDA--AGPLPV-LAAALRF 261 (299)
T ss_pred --hhhcCHHHHHHHHHcCCCC-C-eEEEeecccCCCCCcccccCCcc-chhh--cCcCHH-HHHHHHH
Confidence 555555554 4554443 4 448999885 7999999998764 4444 678887 6666554
|
|
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=61.64 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH-HHHH-HHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHh
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA-LKFI-NSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRIL 319 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~-~~~~-N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~il 319 (421)
|+|++++++.+.+++.++| ++|+++.|+.. +++| .+.+ |.|++..+||.-.. ....+. ....+..++..++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhcc
Confidence 4789999999999999999 89999999999 9997 4555 99999999984211 111123 4566667777777777
Q ss_pred c-cCCCCChHHHHHHH
Q 014658 320 G-LLPPGAYSEVLQQL 334 (421)
Q Consensus 320 G-i~~~~~~~~~~~~~ 334 (421)
. |+|- .++++++.+
T Consensus 78 ~P~~P~-~aEeiw~~l 92 (153)
T PF08264_consen 78 SPFMPF-IAEEIWQRL 92 (153)
T ss_dssp TTTSHH-HHHHHHHHC
T ss_pred CCCCcH-HHHHHHHHh
Confidence 7 4454 455666433
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0006 Score=70.56 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=102.9
Q ss_pred CCCCCCCCCc-cccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----C----------C-Cccccccccch---h
Q 014658 2 ADLQCLPPTY-QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S----------P-NYGRLSGQRLE---N 62 (421)
Q Consensus 2 ~~Lnv~~p~~-~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~----------~-~Yg~ls~~~~~---~ 62 (421)
+-||+. ++- .-+.|++.+...+++++|+++|.||. .|++.. + + .|-.- ..++. .
T Consensus 69 ~WLGl~-wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~-----c~ct~eele~~R~~~~~~g~~p~~y~r~-~~~L~~~~~ 141 (472)
T COG0008 69 EWLGLD-WDEGPYYQSERFDIYYEYAEKLIEKGKAYV-----CYCTPEELEEMRELRGALGEPPPSYDRD-ERNLTLFEK 141 (472)
T ss_pred HhcCCC-CCCceeehhhhHHHHHHHHHHHHHCCCeEE-----ecCCHHHHHHHHHHHhhcCCCCCCCCch-hhccchHHH
Confidence 458887 455 68889999999999999999999994 343331 0 1 22210 11121 1
Q ss_pred hhC-CC------CccccccccCCCcccccccccCCCCcccC-CCC------CCCCCCchhhHHHHHhhcCCCceEEeecc
Q 014658 63 NRA-GE------RVAVDSRKRNPADFALWKAAKAGEPSWDS-PWG------PGRPGWHIECSAMSAHYLSSKFDIHGGGI 128 (421)
Q Consensus 63 ~~~-g~------~v~~~~~K~~p~DF~LWk~~~~~~~~w~s-pwg------~grPgWhiecsam~~~~lg~~~Dih~gG~ 128 (421)
+.. |. |+..+-.-.++ -|-=|.. |++.+.+ -++ .|.|-.|..| +.-.+..| ++--+=|.
T Consensus 142 ~~~~~~~~~~viR~k~~~~~~~~-~~~D~v~---g~i~~~~~~~~dv~~r~dg~ptY~fav-vvDD~~mg--ITHviRG~ 214 (472)
T COG0008 142 MADLGEGGPAVVRLKIPMAHPGP-VFRDLVR---GRIVFAPKHPDFVILRYDGYPTYNFAV-VVDDHLMG--ITHVLRGE 214 (472)
T ss_pred HhhcccCCCeEEEEeCCCCCCCC-cccccee---eeEecCccCCcceeecCCCCcccceee-eechhhcC--CceEEech
Confidence 111 11 11111001111 1111211 2222221 222 4566677643 44445555 34334489
Q ss_pred cCcCcchHHHHHHH---HhccCCCCCcEEEeeeeeee-CCcccccccCCccCHHHH-HHhcCchHHHHHHhh-c-CC--C
Q 014658 129 DLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQI-TERYHPLALRHFLIS-A-HY--R 199 (421)
Q Consensus 129 Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dl-l~~yg~D~lR~~ll~-~-~~--~ 199 (421)
| |..|.+-|. .+++-++ +.+ .|.+.++. +|+|||||.| .++..++ ...|.+.+++-|+.. . .+ .
T Consensus 215 d----~~~nt~~q~~l~~~lg~~~-P~~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~ 287 (472)
T COG0008 215 D----HLDNTPRQIWLYEALGWPP-PVY-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPE 287 (472)
T ss_pred h----hccCCHHHHHHHHHcCCCC-CcE-EEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChh
Confidence 9 555665554 4454444 445 79999986 5679999999 6766653 356888888877754 2 33 3
Q ss_pred CCcccCHHHHHH
Q 014658 200 SPLNYSVLQLDS 211 (421)
Q Consensus 200 ~d~~fs~e~l~~ 211 (421)
..-.|+.+.+..
T Consensus 288 ~~e~f~~~~~~~ 299 (472)
T COG0008 288 AIEIFSLEEGIK 299 (472)
T ss_pred hHHHHHHHHHHh
Confidence 344555555443
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=72.16 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=110.4
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----C------CCcccccc---ccc-hhhhCCC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S------PNYGRLSG---QRL-ENNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~------~~Yg~ls~---~~~-~~~~~g~ 67 (421)
+-||+. |+...+.|+|.+.+-++..+|+++|+||.- |++.. . ..|-..+. ..+ ++|..|.
T Consensus 324 ~WLG~~-~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C-----~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~ 397 (788)
T PLN02859 324 EWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGL 397 (788)
T ss_pred HHcCCC-CCCcccccHhHHHHHHHHHHHHHcCCeEec-----cCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhch
Confidence 357876 577789999999999999999999999962 22110 0 00111111 111 2333332
Q ss_pred C--------cccc--ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHH
Q 014658 68 R--------VAVD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 137 (421)
Q Consensus 68 ~--------v~~~--~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~ 137 (421)
- ...+ +.--+=+|+++.+-.....+.=-+.| ...|-.|..| +...+..| ++.-+-|.|.+- |..-
T Consensus 398 ~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~-~iyPtYdFA~-~vdD~leg--ITHvLRg~E~~~-~~~~ 472 (788)
T PLN02859 398 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH-CIVDSLEN--ITHSLCTLEFET-RRAS 472 (788)
T ss_pred hccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCe-EEEecccccc-cccccccC--CceEeechhhhc-CCHH
Confidence 1 1111 11111145555543211111000222 2367777654 44444444 333334677332 2222
Q ss_pred HHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchHHHHHHhhcCC-CC
Q 014658 138 EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHY-RS 200 (421)
Q Consensus 138 ~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll~-~yg~D~lR~~ll~~~~-~~ 200 (421)
-..+..|++..+ +.+ .|.+.+.++|.||||+++.. .|+..+.. .|.|+++|=|++...+ ..
T Consensus 473 y~wl~~aLg~~~-P~~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~ 550 (788)
T PLN02859 473 YYWLLDSLGLYQ-PYV-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRS 550 (788)
T ss_pred HHHHHHHcCCCC-CcE-EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 223445665544 334 68898889999999999874 46666665 5999999999988543 33
Q ss_pred Cc-ccCHHHHHHH
Q 014658 201 PL-NYSVLQLDSA 212 (421)
Q Consensus 201 d~-~fs~e~l~~~ 212 (421)
+. .|+++.|...
T Consensus 551 ~~e~i~~~~Le~~ 563 (788)
T PLN02859 551 DNSLIRMDRLEHH 563 (788)
T ss_pred CCceecHHHHHhh
Confidence 44 6999998443
|
|
| >PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=54.97 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hh-hhhHHHHHHHHHHHHHHHhHhc
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQ-LSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~-~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+..++..+..+...+..++ .+++++.++.. +.+++..+|+|++....+.+.. .. ..++..+.++..++..++++||
T Consensus 35 e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~y-L~~La~~f~~fy~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llg 112 (119)
T PF05746_consen 35 ERELLKQLARFPDVLEKAA-KDLEPHKLCDY-LYELAQAFNSFYDNVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLG 112 (119)
T ss_dssp HHHHHHHHCTHHHHHHHHH-HHT-CHHHHHH-HHHHHHHHHHHHHHS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567777888888898999 89999999999 9999999999999887765322 22 5578889999999999999999
Q ss_pred cCCC
Q 014658 321 LLPP 324 (421)
Q Consensus 321 i~~~ 324 (421)
|.+.
T Consensus 113 i~~~ 116 (119)
T PF05746_consen 113 IEPL 116 (119)
T ss_dssp ----
T ss_pred CCcc
Confidence 9764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A. |
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=63.40 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCCCCCCCCccc-cccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC---------CCCcccc-cc-------c-----
Q 014658 2 ADLQCLPPTYQP-RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SPNYGRL-SG-------Q----- 58 (421)
Q Consensus 2 ~~Lnv~~p~~~~-r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~---------~~~Yg~l-s~-------~----- 58 (421)
+-||+. ++--| +.|++++.-.+++++|+++|.||.- |++.. -+.|..- .+ .
T Consensus 60 ~wLGl~-wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C-----~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~R 133 (272)
T TIGR03838 60 EAYGLH-WDGEVVYQSQRHALYQAALDRLLAAGLAYPC-----QCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWR 133 (272)
T ss_pred HHcCCC-CCCCeeeeeCCHHHHHHHHHHHHHcCCEEec-----CCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEE
Confidence 457886 45444 8899999999999999999999941 11110 0112100 00 0
Q ss_pred --------cchhhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccC
Q 014658 59 --------RLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 130 (421)
Q Consensus 59 --------~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dl 130 (421)
...+...|. +..+. -..-.||+++|. .|.|..|..| +.-....| ++.-+=|.|
T Consensus 134 lk~~~~~~~~~D~~~g~-~~~~~-~~~~~D~vi~R~-------------Dg~ptY~fA~-vVDD~~~g--IThViRG~D- 194 (272)
T TIGR03838 134 LRVPDGVIAFDDRLQGP-QQQDL-AAAVGDFVLRRA-------------DGLFAYQLAV-VVDDAAQG--ITHVVRGAD- 194 (272)
T ss_pred EecCCCCceEEEeeeeE-EEecC-cccCCCEEEEec-------------CCCccccChh-hhhcccCC--CCEEEeCHh-
Confidence 000000010 00000 111246666664 3678888755 44445555 444445799
Q ss_pred cCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCC
Q 014658 131 IFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN 173 (421)
Q Consensus 131 i~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN 173 (421)
|..+.+.|. .+++-++| .|.|++.++ .+|.|+||+.|-
T Consensus 195 ---~l~~t~~q~~l~~aLg~~~P--~y~H~pll~~~~g~kLSKR~~~ 236 (272)
T TIGR03838 195 ---LLDSTPRQIYLQRLLGLPPP--RYLHLPLVVNADGEKLSKQNGA 236 (272)
T ss_pred ---hhhccHHHHHHHHHhCCCCC--eEEechhhhCCCCCeeeccCCc
Confidence 556665554 55554444 458999874 799999999876
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.075 Score=53.58 Aligned_cols=179 Identities=10% Similarity=0.066 Sum_probs=113.1
Q ss_pred HHHHHhccCCCCCcEEEeeeeeee---CCcccccccCCccCHHHHHH-------------------------------hc
Q 014658 139 IAQSCAACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTIRQITE-------------------------------RY 184 (421)
Q Consensus 139 ~a~~~a~~~~~~~~~~~h~g~l~~---~G~KMSKSlGN~i~~~dll~-------------------------------~y 184 (421)
-|+-.+...+..+++ -|.||=.+ +|.|+-...|.+|-+.|+++ .|
T Consensus 418 Aar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavay 496 (656)
T KOG4426|consen 418 AARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAY 496 (656)
T ss_pred HHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh
Confidence 333344445667777 67776543 78899889999999999987 13
Q ss_pred CchHHHHHHhhcCCCCCcccCHHHHHHHH-HH-------HHHHHHHHHHH-------HHhcCCcccCCC-CCCC-ChHHH
Q 014658 185 HPLALRHFLISAHYRSPLNYSVLQLDSAS-DA-------VFYIYQTLQDC-------EVALSPFQEHGK-TARI-NPAAE 247 (421)
Q Consensus 185 g~D~lR~~ll~~~~~~d~~fs~e~l~~~~-~~-------l~~l~~~l~~~-------~~~~~~~~~~~~-~~~~-d~~l~ 247 (421)
| .+.|.=|+++--+|.-||.+.+-+-. |+ +.|+.+.++.. ...+..- +.. .+.. +..+-
T Consensus 497 G--ciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT--~ki~LDH~~E~kLg 572 (656)
T KOG4426|consen 497 G--CIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKT--GKIALDHEKEWKLG 572 (656)
T ss_pred c--chhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhc--CccccCCHHHHHHH
Confidence 3 25555566555667778877664422 22 23333333210 0111100 000 1111 12344
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh------hhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 248 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ------QQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 248 ~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~------~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
..+-.+.+.+..+. +++=++..+.. ++++...+..|++++-...+.+ -.-.++.+|.++..+++..+.||||
T Consensus 573 ~~lLkf~e~v~~~~-~~L~lh~lC~y-~y~l~t~Ft~FY~~Cyv~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi 650 (656)
T KOG4426|consen 573 KHLLKFAEIVEKAL-DSLFLHVLCDY-LYELATLFTEFYDSCYVIEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGI 650 (656)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhhccEEeccccccccccchhHHHHHHHHHHHHHHHhhHhhCC
Confidence 55677778888888 89999999999 9999999999998776532111 1134677889999999999999999
Q ss_pred CCC
Q 014658 322 LPP 324 (421)
Q Consensus 322 ~~~ 324 (421)
.|.
T Consensus 651 ~pV 653 (656)
T KOG4426|consen 651 KPV 653 (656)
T ss_pred ccc
Confidence 764
|
|
| >KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=60.47 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=101.7
Q ss_pred CcccccccCCccCHHHHHH----------------------------hcCchHHHHHHhhcCCCCCcccCHHHHHHHHH-
Q 014658 164 NEKMSKSLGNFFTIRQITE----------------------------RYHPLALRHFLISAHYRSPLNYSVLQLDSASD- 214 (421)
Q Consensus 164 G~KMSKSlGN~i~~~dll~----------------------------~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~- 214 (421)
++=||..+|+++.+.|+++ ..|.-++..-.+...-.++..|+|+.+-....
T Consensus 365 v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gd 444 (567)
T KOG1195|consen 365 VQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGD 444 (567)
T ss_pred cccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCC
Confidence 4568888888888887776 35555666555555445566777776644321
Q ss_pred -H--HHHHHHHHHHHHHhcCCcccC--------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 215 -A--VFYIYQTLQDCEVALSPFQEH--------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 215 -~--l~~l~~~l~~~~~~~~~~~~~--------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
. +.--..||..+...++..... ...++.-..++..+..+.+.+..+| ++++....+.. |+.++.+++
T Consensus 445 tg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~~~lV~Y-L~~La~a~s 522 (567)
T KOG1195|consen 445 TGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEPCTLVTY-LFKLAHAVS 522 (567)
T ss_pred chHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-HhhcchhHHHH-HHHHHHHHH
Confidence 1 111112333333222211110 0011222345677888889999999 99999999999 999999999
Q ss_pred HHHhhhcccCc-hhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 284 SSLNMLKKKQP-KQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 284 ~yi~~~~pw~~-~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
+.+........ ....-.++.+..++..+|.+.+++|||.|.
T Consensus 523 ~~yk~l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lLGitPv 564 (567)
T KOG1195|consen 523 SAYKILWVKDSPMEIALARLLLFSAVRQVLNNGMRLLGITPV 564 (567)
T ss_pred hHHhheeecCCcHHHHHHHHHHHHHHHHHHHhHHHHhCCCcc
Confidence 98876554321 112234677888999999999999999874
|
|
| >cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0036 Score=49.07 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HH
Q 014658 207 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NS 284 (421)
Q Consensus 207 e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~-N~ 284 (421)
+.|.++.+.+.+|++.+..+. . . .+..+.++|.++|+||||+|.|+.. |+++++.+ |.
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~--------~----~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD--------G----P-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--------c----c-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhc
Confidence 578888888888887776431 0 0 1234668999999999999999999 99999877 54
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC. |
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0014 Score=63.29 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=42.9
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
.|+..||.|.. +|++.-.=...-+...++ +-+|+.+|. .+|.|||||.+|.+. ..+ .-+|+.++=++..
T Consensus 152 ~~l~~~G~DQ~-~~i~~~rd~a~r~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l--~dsp~~i~~Ki~~ 221 (269)
T cd00805 152 VDLQLGGSDQR-GNITLGRDLIRKLGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPV--LDSPYDVYQKIRN 221 (269)
T ss_pred CCeeEecHHHH-HHHHHHHHHHHHhCCCCc--EEEeeccccCCCCCcccCCCCCccc-ccC--CCCHHHHHHHHHc
Confidence 59999999987 566554444333333322 335667775 799999999999883 111 2345555545444
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.01 Score=58.76 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=87.4
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------------CCCccccccccch--hh-
Q 014658 3 DLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------------SPNYGRLSGQRLE--NN- 63 (421)
Q Consensus 3 ~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------------~~~Yg~ls~~~~~--~~- 63 (421)
-||+....-..+-|++.+...+++++|+++|.||. .||+.. -+.|..-. +++. ++
T Consensus 62 wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~aY~-----C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c-~~~~~~~~~ 135 (314)
T PF00749_consen 62 WLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKAYP-----CFCSREELKAAREAQEGAGCPHRPRYPGTC-RELTEEEMR 135 (314)
T ss_dssp HHT---STCEEEGGGGHHHHHHHHHHHHHTTSEEE-----EESEHHHHHHHHHHHHHTTSTTTTSBHHHH-HCHHHHHHH
T ss_pred EEEEecCCeEEeHHHHHHHHHHHHHHHhhcCCCcc-----ccCCHHHHHHHHHHhhccCCCccccchhhh-hhhhHHHHH
Confidence 46776433566679999999999999999999994 343321 12232211 1111 11
Q ss_pred ---hCCCC----ccccc----------------cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCC
Q 014658 64 ---RAGER----VAVDS----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120 (421)
Q Consensus 64 ---~~g~~----v~~~~----------------~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~ 120 (421)
..|.. +.++. ......||+++|+ .|.|..|..| +.-....|
T Consensus 136 ~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r~-------------dg~ptY~fA~-vVDD~~~g-- 199 (314)
T PF00749_consen 136 AGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRRS-------------DGYPTYHFAV-VVDDHLMG-- 199 (314)
T ss_dssp HHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEEST-------------TSEB-HHHHH-HHHHHHTT--
T ss_pred hhhccCCceeeeeecccccccccccCcceeeeeccccCCchhcccc-------------ccCcccccce-eecccccc--
Confidence 11211 11110 0112245555554 3556678643 44344455
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCcc-CHHHHHH-hcCchHHHHHHhh
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF-TIRQITE-RYHPLALRHFLIS 195 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i-~~~dll~-~yg~D~lR~~ll~ 195 (421)
++.-+=|.|++. ....-+.+..+++.++ +.+ .|+..++ .+|.|+||+.+-.. ....+.+ .+.+.++-=||..
T Consensus 200 ITHViRG~D~l~-~t~~Q~~L~~~Lg~~~-P~~-~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 200 ITHVIRGEDLLS-STPRQILLYEALGWPP-PPY-AHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp -SEEEEEGGGTT-CHHHHHHHHHHCTSSS--EE-EEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHH
T ss_pred cCeEEEcccccc-ccHHHHHHHHHhCCCC-cce-EeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHH
Confidence 444444799655 2333334446665544 334 6766554 68999999998754 3444443 3566555555544
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0032 Score=60.99 Aligned_cols=56 Identities=18% Similarity=-0.053 Sum_probs=34.7
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTI 177 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~ 177 (421)
..++..||.|... |++.-+=...-+...+.+.. +++-.|+ .+|.|||||.||.+..
T Consensus 153 ~~~~vp~G~DQ~~-~i~l~rdla~r~n~~~~p~~-l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 153 GCDIQPGGSDQWG-NITLGRELARRFNGFTIAEG-LTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred CCcEEEecHHHHH-HHHHHHHHHHHhCCCCCCeE-EeeccccCCCCCcCCCCCCCCccc
Confidence 3599999999765 55433333333332222333 3435555 6999999999998743
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >smart00836 DALR_1 DALR anticodon binding domain | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.016 Score=48.72 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+..++..+..+.+.+..++ .+.+++.++.. +.++...+|.|++........ .....++..+.++...+..++++||
T Consensus 38 E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llg 115 (122)
T smart00836 38 ELALLRLLARFPEVLEAAA-ETLEPHRLANY-LYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLG 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHCCcHHHHHH-HHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566777778888888888 79999999999 999999999999987765432 1234578889999999999999999
Q ss_pred cCCC
Q 014658 321 LLPP 324 (421)
Q Consensus 321 i~~~ 324 (421)
|.|.
T Consensus 116 i~~~ 119 (122)
T smart00836 116 ISAP 119 (122)
T ss_pred CCcc
Confidence 9764
|
This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505. |
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.007 Score=60.17 Aligned_cols=79 Identities=19% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEeeeeee----eCCcccccccCC-ccCHHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMHNGHVT----NNNEKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h~g~l~----~~G~KMSKSlGN-~i~~~d 179 (421)
.-|+.+.|=...|+..+|.|.. +|++.-.-...-++ +. +-+.. +|+.++. .+|.|||||.+| .|.+.|
T Consensus 129 ~lqaaDil~~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~~-l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 129 VLQAADILLYQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPES-LISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred HHHHhhhhhcCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCChh-hhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 4566666656789999999984 57766555554443 11 12223 3434432 356899999997 777655
Q ss_pred HHHhcCchHHHHHHhh
Q 014658 180 ITERYHPLALRHFLIS 195 (421)
Q Consensus 180 ll~~yg~D~lR~~ll~ 195 (421)
+++.++=-+.+
T Consensus 207 -----~~e~I~~KI~~ 217 (328)
T TIGR00233 207 -----TPKQIKKKIRK 217 (328)
T ss_pred -----CHHHHHHHHHh
Confidence 55556555544
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0032 Score=64.38 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=47.6
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
...||..||.|..+ |+..-+=...-++..++ +-++.-.++ .+|.|||||.||.|.+.| ++.+|..++=++++.
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 47899999999765 44433333333433322 223434443 689999999999998877 456677777666643
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0032 Score=64.45 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
...||.+||.|... |++.-.=...-++.++. +-++.-.|+ .+|+|||||.||.|.+.| ++.+|..++=++++.
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~--~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQ--FGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCe--EEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 37899999999885 66543333333333321 213334443 689999999999999887 566777887777653
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0083 Score=61.30 Aligned_cols=51 Identities=49% Similarity=0.681 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEeCccc
Q 014658 347 EDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLV 397 (421)
Q Consensus 347 ~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~ 397 (421)
+++.+..++|..++++|+++++|++|++++..||.++|.|.++.|+...++
T Consensus 526 e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys 576 (586)
T KOG2007|consen 526 EELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYS 576 (586)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhccccccc
Confidence 446777888889999999999999999999999999999999999985444
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0044 Score=61.63 Aligned_cols=68 Identities=25% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEE--eeeeee-eCCcccccccCCccCHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIR 178 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~ 178 (421)
.-|+.+.|=+..|+-.+|.|... |++...-...-++ +. +.+...+ |+-.+. .+|.|||||.+|.|.+.
T Consensus 139 vLqAADIl~~~~d~VpvG~DQ~q-hleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 139 ILMAADILLFQATHVPVGKDQIQ-HIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred HHHhhhhhhccCCEEEeccccHH-HHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCccccc
Confidence 34666666556799999999764 7766544433322 21 2223322 444443 68999999999988543
|
|
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0088 Score=58.48 Aligned_cols=70 Identities=23% Similarity=0.065 Sum_probs=42.7
Q ss_pred hhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC---CCCcEEEeeeeee-eCCc-ccccccCC-ccCHHH
Q 014658 108 ECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD---SNVSYWMHNGHVT-NNNE-KMSKSLGN-FFTIRQ 179 (421)
Q Consensus 108 ecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~---~~~~~~~h~g~l~-~~G~-KMSKSlGN-~i~~~d 179 (421)
...-|+.+++-...|+..||.|... |+..-.-...-++.+ +.+ ..+++-++. .+|. |||||.+| .|.+.|
T Consensus 137 Yp~lQaaD~~~l~~~~~~~G~DQ~~-~~~l~rd~a~k~~~~~~~~~p-~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 137 YPLLQAADILLLKADLVPGGIDQRG-HIELARDLARKFNYKEIFPKP-AGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp HHHHHHHHHHHTTHSEEEEEGGGHH-HHHHHHHHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred cccccccceeeeccccccccchHHH-HHHHHHHHHhhhcccccccCc-hheeeccccccCCccccCccCCccEEEEec
Confidence 3345666665556789999999754 444333333333322 223 335556775 6888 99999999 776654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.013 Score=59.27 Aligned_cols=78 Identities=17% Similarity=0.010 Sum_probs=48.3
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-cccccccCC-ccCHHHHHHhcCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSLGN-FFTIRQITERYHP 186 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSlGN-~i~~~dll~~yg~ 186 (421)
-|+.+.+-...|+..+|.|... |++.-.-....++.. +..+.+|+.+|. + +| .|||||.+| .|.+.| ++
T Consensus 201 LQaaDil~l~adivpvG~DQ~~-~~~LaRdia~~~~~~-~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----sp 273 (383)
T PTZ00126 201 MQCADIFYLKADICQLGMDQRK-VNMLAREYCDKKKIK-KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SE 273 (383)
T ss_pred HHhhhhhccCCCEEEeCccHHH-HHHHHHHHHHHhCCC-CCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CH
Confidence 3555555567899999999864 444333222333322 233446667775 5 45 799999988 577765 56
Q ss_pred hHHHHHHhh
Q 014658 187 LALRHFLIS 195 (421)
Q Consensus 187 D~lR~~ll~ 195 (421)
+.+|=-+.+
T Consensus 274 e~I~kKI~k 282 (383)
T PTZ00126 274 EDVNRKIKK 282 (383)
T ss_pred HHHHHHHHh
Confidence 666655555
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.18 Score=50.29 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CCCC---CcEEE-eeeeee-eCC-cccccccCCccCHHHHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QDSN---VSYWM-HNGHVT-NNN-EKMSKSLGNFFTIRQIT 181 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~~~---~~~~~-h~g~l~-~~G-~KMSKSlGN~i~~~dll 181 (421)
-|+.+.+=...|+..+|.|... |++.-.-+..-++ +.|. +...+ |+..|. ++| .|||||.+|.|.+.|
T Consensus 133 lqaaDIl~~~~d~vpvG~DQ~~-h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D-- 209 (333)
T PRK12282 133 SQAADITAFKATLVPVGDDQLP-MIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD-- 209 (333)
T ss_pred HHHHHHHhhCCCEEEeccccHH-HHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC--
Confidence 4555533335799999999765 5554444333332 2221 22212 223333 466 899999999887665
Q ss_pred HhcCchHHHHHHhh
Q 014658 182 ERYHPLALRHFLIS 195 (421)
Q Consensus 182 ~~yg~D~lR~~ll~ 195 (421)
+++.++=-+.+
T Consensus 210 ---~pe~I~kKI~~ 220 (333)
T PRK12282 210 ---DADTIKKKVMS 220 (333)
T ss_pred ---CHHHHHHHHHh
Confidence 55555544443
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.012 Score=59.98 Aligned_cols=80 Identities=20% Similarity=0.071 Sum_probs=46.7
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cC-C--CCCcEEE--eeeeee-eCCcccccccCCccCHHHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQ-D--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIRQI 180 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~-~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~dl 180 (421)
.-|+.++|=+..|+-.+|.|... |++.-.=+..-+ ++ + +.+...+ |+..|. ++|.|||||.+|.|.+.|
T Consensus 138 vLqAADILly~ad~VPVG~DQ~q-HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D- 215 (431)
T PRK12284 138 VLMAADILMFNAHKVPVGRDQIQ-HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA- 215 (431)
T ss_pred HHHHhhhhhcCCCEEEEcchhHH-HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC-
Confidence 45666666666799999999865 766543333222 11 1 1122223 222333 589999999999996553
Q ss_pred HHhcCchHHHHHHhh
Q 014658 181 TERYHPLALRHFLIS 195 (421)
Q Consensus 181 l~~yg~D~lR~~ll~ 195 (421)
+++.+|=-+.+
T Consensus 216 ----s~~~I~kKI~~ 226 (431)
T PRK12284 216 ----PREELKKAIFS 226 (431)
T ss_pred ----CHHHHHHHHhc
Confidence 44455544443
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.021 Score=56.85 Aligned_cols=77 Identities=22% Similarity=0.169 Sum_probs=47.9
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc--cccccc-CCccCHHHHHHhcCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE--KMSKSL-GNFFTIRQITERYHP 186 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~--KMSKSl-GN~i~~~dll~~yg~ 186 (421)
-|+.+.+-...|+..+|.|... |++.-.-...-++...+ -. +++.+|. ++|. |||||. ||.|.+.| ++
T Consensus 159 lqaaDil~~~ad~vpvG~DQ~~-h~~l~Rdia~~~n~~~p-~~-l~~~~l~~L~g~~~KMSKS~p~~~I~L~D-----~~ 230 (329)
T PRK08560 159 MQVADIFYLDVDIAVGGMDQRK-IHMLAREVLPKLGYKKP-VC-IHTPLLTGLDGGGIKMSKSKPGSAIFVHD-----SP 230 (329)
T ss_pred HHHHHHHHhCCCEEEechhHHH-HHHHHHHhhHhcCCCCc-eE-EEcCccCCCCCCCCCCcCCCCCCeecccC-----CH
Confidence 4555655567899999999764 55544444333333332 23 4446665 6776 999999 99998765 34
Q ss_pred hHHHHHHhh
Q 014658 187 LALRHFLIS 195 (421)
Q Consensus 187 D~lR~~ll~ 195 (421)
+.+|==+.+
T Consensus 231 ~~I~~KI~k 239 (329)
T PRK08560 231 EEIRRKIKK 239 (329)
T ss_pred HHHHHHHHh
Confidence 444444433
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.024 Score=57.37 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=24.6
Q ss_pred eeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 158 GHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 158 g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
..|. ++|.|||||.+|.|.+.| +++.+|=-+.+.
T Consensus 255 ~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~a 289 (398)
T PRK12283 255 SKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRTM 289 (398)
T ss_pred CcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHhC
Confidence 4444 588999999999988765 566666555553
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.02 Score=57.70 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=44.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhc----cCCCCCcEEEeeeeee-eCCccccccc-CCccCHHHHHHhcCchHHHHH
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAA----CQDSNVSYWMHNGHVT-NNNEKMSKSL-GNFFTIRQITERYHPLALRHF 192 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~----~~~~~~~~~~h~g~l~-~~G~KMSKSl-GN~i~~~dll~~yg~D~lR~~ 192 (421)
+..++..+|.|.. ||++.-.-...-+ +-..|. . +|+-++. ++|.|||||. +|.|.+.| +++.++=-
T Consensus 202 ~~~~lvPvG~DQ~-~h~~ltRdiA~r~n~~~gf~~P~-~-l~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kK 273 (368)
T PRK12285 202 PKPTLVPVGIDQD-PHIRLTRDIAERLHGGYGFIKPS-S-TYHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKK 273 (368)
T ss_pred CCceEEEeccchH-HHHHHHHHHHHHHhhhcCCCCch-h-HhhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHH
Confidence 4567899999974 5776655444444 222333 3 3446664 7899999998 67888765 55555555
Q ss_pred Hhh
Q 014658 193 LIS 195 (421)
Q Consensus 193 ll~ 195 (421)
+.+
T Consensus 274 I~k 276 (368)
T PRK12285 274 IMK 276 (368)
T ss_pred HHh
Confidence 444
|
|
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.035 Score=54.01 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccC---C--CCCcEEEee--eeee-eCC--cccccccC-CccCHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ---D--SNVSYWMHN--GHVT-NNN--EKMSKSLG-NFFTIR 178 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~---~--~~~~~~~h~--g~l~-~~G--~KMSKSlG-N~i~~~ 178 (421)
.-|+.+.+=...|+..+|.|.. +|++.-.-...-++. . +.+.. +|+ ..|. .+| .|||||.| |.|.+.
T Consensus 127 ~lqaaDil~~~~~~vpvG~DQ~-~h~~l~Rdia~r~n~~~~~~~~~P~~-l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~ 204 (280)
T cd00806 127 VLQAADILLYKACLVPVGIDQD-PHLELTRDIARRFNKLYGEIFPKPAA-LLSKGAFLPGLQGPSKKMSKSDPNNAIFLT 204 (280)
T ss_pred HHHHhhhhhccCCEEeeccccH-HHHHHHHHHHHHhccccccccCCCee-eccCCCccccCCCCCCcccCCCCCCeEEee
Confidence 3456665555678889999975 476655555444441 1 22333 455 4443 455 59999998 998876
Q ss_pred HHHHhcCchHHHHHHhh
Q 014658 179 QITERYHPLALRHFLIS 195 (421)
Q Consensus 179 dll~~yg~D~lR~~ll~ 195 (421)
| +++.+|=-+.+
T Consensus 205 d-----~~~~i~~KI~~ 216 (280)
T cd00806 205 D-----SPKEIKKKIMK 216 (280)
T ss_pred C-----CHHHHHHHHHh
Confidence 5 55555554444
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.027 Score=56.22 Aligned_cols=80 Identities=21% Similarity=0.089 Sum_probs=47.4
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEe-e-eeee-eCCc--ccccccC---CccC
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMH-N-GHVT-NNNE--KMSKSLG---NFFT 176 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h-~-g~l~-~~G~--KMSKSlG---N~i~ 176 (421)
.-|+.+.+-...|+..+|.|..+ |++.-.-...-++ +. +-+...++ + ..|. ++|. |||||.+ |.|.
T Consensus 128 ~lQaaDil~~~~divpvG~DQ~~-h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~ 206 (333)
T PRK00927 128 VLMAADILLYKADLVPVGEDQKQ-HLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTIN 206 (333)
T ss_pred HHHHHHHHhcCCCEEeeccchHH-HHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEE
Confidence 45666666567899999999854 6655544433332 11 12223222 1 2233 5775 9999999 8888
Q ss_pred HHHHHHhcCchHHHHHHhh
Q 014658 177 IRQITERYHPLALRHFLIS 195 (421)
Q Consensus 177 ~~dll~~yg~D~lR~~ll~ 195 (421)
+.| +++.++=-+.+
T Consensus 207 l~D-----~~~~I~~KI~~ 220 (333)
T PRK00927 207 LLD-----DPKTIAKKIKK 220 (333)
T ss_pred eeC-----CHHHHHHHHHh
Confidence 765 55555554444
|
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.047 Score=53.56 Aligned_cols=68 Identities=18% Similarity=0.006 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEeee--eee-eCC-cccccccCC-ccCHHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMHNG--HVT-NNN-EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h~g--~l~-~~G-~KMSKSlGN-~i~~~d 179 (421)
+-|+.++|=+..++-..|.|.. ||.+-..-+..-++ +. +.+...+| . .+. ++| .|||||.+| +|.+.|
T Consensus 135 vlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~f~~P~~~~~-~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 135 VLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEVFPLPEALIS-KVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred HHHHHHhhhccCCeeccCCCch-HHHHHHHHHHHHHHhhcCCccCCcccccc-CCCcccCCCCCCcccccCCCCeeeccC
Confidence 4577777766778889999975 58776655444432 11 23334233 5 554 678 899999999 776543
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.085 Score=53.63 Aligned_cols=51 Identities=22% Similarity=0.068 Sum_probs=34.6
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCC
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN 173 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN 173 (421)
..||.+||.|.-+.|..=--- ..-++. .+.+-+|+-.|+ .+|.|||||.||
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl-~rr~g~--~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDL-IRRLGQ--KKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred ccchhcCChHHHHHHHHHHHH-HHHhCC--CCeEEEEeccccCCCCCcccccCCC
Confidence 468999999988876532211 222333 233557767766 699999999999
|
|
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.12 Score=56.02 Aligned_cols=67 Identities=16% Similarity=0.006 Sum_probs=40.8
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eC-C-ccccccc-CCccCHHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-N-EKMSKSL-GNFFTIRQ 179 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-G-~KMSKSl-GN~i~~~d 179 (421)
-|+.+.+-...|+..+|.|.. +|++.-.-...-+ +..+.-+.+|+.++. ++ | .|||||. +|.|.+.|
T Consensus 166 LQAADIl~l~adivpvG~DQ~-qh~eLaRdia~~~-g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 166 MQCADIFFLKADICQLGLDQR-KVNMLAREYCDLI-GRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred HHhhcccccCCCEEEeCccHH-HHHHHHHHHHHHh-CCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 455566666788999999976 4655433333323 322233446655553 44 4 6999999 68887554
|
|
| >KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.95 Score=45.96 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=59.2
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEee-cccCcCcchHHHHHH---HHhccCCCCCcEEEeeeeee-eCCcccccccCCc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGG-GIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNF 174 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~g-G~Dli~pH~~~~~a~---~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~ 174 (421)
.|+|.+|..|. .-.+..| +. |++ |.+ |..+.+-+ -.|+ +-+++++ .|--.++ .+|.|.||..|.
T Consensus 220 DgfPTYHfAnV-VDDh~M~--Is-HViRGeE----WlpST~KH~lLYkAf-gW~pPkF-aHlpLl~n~d~sKLSKRqgD- 288 (524)
T KOG1149|consen 220 DGFPTYHFANV-VDDHLMG--IS-HVIRGEE----WLPSTLKHILLYKAF-GWQPPKF-AHLPLLLNPDGSKLSKRQGD- 288 (524)
T ss_pred CCCcceeeeee-ecchhcc--hh-heeecch----hccccHHHHHHHHHh-CCCCCce-eeeeeeecCCcchhhhhcCc-
Confidence 68999998663 2122222 11 222 444 33333222 2344 4344545 6766655 699999999998
Q ss_pred cCHHHHHH-hcCchHHHHHHhh-c-CC-CCCcccCHHHHHHH
Q 014658 175 FTIRQITE-RYHPLALRHFLIS-A-HY-RSPLNYSVLQLDSA 212 (421)
Q Consensus 175 i~~~dll~-~yg~D~lR~~ll~-~-~~-~~d~~fs~e~l~~~ 212 (421)
+.+..+.+ .|=|+++==|+.. + ++ ..+--||.+.|.+.
T Consensus 289 ~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieq 330 (524)
T KOG1149|consen 289 ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQ 330 (524)
T ss_pred chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHH
Confidence 44555554 5778888767665 3 44 44456777777664
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.12 Score=52.43 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=35.1
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~d 179 (421)
++.+++-...|+..||.|..+ |..--.-...-....+. +-+..-.++ .+|.|||||.||.|...+
T Consensus 169 Qa~D~~~l~~di~~gG~DQ~~-ni~~g~dLar~~~~~~~--~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 169 QAYDFVYLNVDLQIGGSDQWG-NIRKGRDLIRRNLPSLG--FGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred HHHHHHHHcCCeeEecchhHH-HHHHHHHHHHHhcCCCc--eeeceeeecCCCCCCccCCCCCcccCCc
Confidence 333433334689999999744 33322222222222221 112223333 579999999999877543
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.31 Score=49.48 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=39.2
Q ss_pred EeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHHHHHhcCchHHHHHHhh
Q 014658 124 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 124 h~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~dll~~yg~D~lR~~ll~ 195 (421)
-..|.|. .||+....-...-++...| ..+|+.++. +.| .|||||.+| .|.+.| +++.++=.+..
T Consensus 223 VPvG~DQ-d~~~~ltRdia~r~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 223 IPCAIDQ-DPYFRMTRDVAPRLGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred eecccch-HHHHHHHHHHHHHhCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 3346775 4566655544444444333 335656664 566 799999988 688776 66666655554
|
|
| >PLN02886 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=81.65 E-value=1.3 Score=45.05 Aligned_cols=34 Identities=21% Similarity=0.038 Sum_probs=23.4
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA 144 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a 144 (421)
.-|+.++|=+..|+-.+|.|... |++.-.-...-
T Consensus 174 vLqAADILl~~a~~VPVG~DQ~q-H~eLtRdiA~r 207 (389)
T PLN02886 174 VLMASDILLYQADLVPVGEDQKQ-HLELTRDIAER 207 (389)
T ss_pred HHHHhhhhhcCCCeEEEccchHH-HHHHHHHHHHH
Confidence 45666666667899999999764 77766555433
|
|
| >KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.02 E-value=1 Score=46.92 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=34.0
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 39 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~ 39 (421)
.-|||. |+.++..|+|.+.|.++..+|+..|-||+.|
T Consensus 260 ~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 260 SLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHhCcC-cceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 458997 7999999999999999999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 421 | ||||
| 1li5_A | 461 | Crystal Structure Of Cysteinyl-Trna Synthetase Leng | 2e-69 | ||
| 3tqo_A | 462 | Structure Of The Cysteinyl-Trna Synthetase (Cyss) F | 2e-69 | ||
| 3sp1_A | 501 | Crystal Structure Of Cysteinyl-Trna Synthetase (Cys | 1e-37 | ||
| 3c8z_A | 414 | The 1.6 A Crystal Structure Of Mshc: The Rate Limit | 2e-33 |
| >pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461 | Back alignment and structure |
|
| >pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462 | Back alignment and structure |
|
| >pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi Length = 501 | Back alignment and structure |
|
| >pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 530 bits (1367), Expect = 0.0
Identities = 152/393 (38%), Positives = 205/393 (52%), Gaps = 34/393 (8%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQR 59
L L P +PR + H+ +I ++ Q+I AYV + GDV F V P YG LS Q
Sbjct: 100 FDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQD 159
Query: 60 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
L+ +AG RV V KRNP DF LWK +K GEPSW SPWG GRPGWHIECSAM+ L +
Sbjct: 160 LDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGN 219
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179
FDIHGGG DL+FPHHENEIAQS A V+YWMH+G V + EKMSKSLGNFFT+R
Sbjct: 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRD 279
Query: 180 ITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239
+ + Y +R+FL+S HYRS LNYS L A A+ +Y L+ + ++P
Sbjct: 280 VLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGG---- 335
Query: 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
F M DD NT + F D + +N
Sbjct: 336 -----------EAFEARFIEAMDDDFNTPEAYSVLF-DMAREVNRLKA------------ 371
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
+ + + + ++++ +LGLL + + + + ++ LI++R A
Sbjct: 372 EDMAAANAMASHLRKLSAVLGLLE-----QEPEAFLQSGAQADDSEVAEIEALIQQRLDA 426
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
RK KD++ +D R L GI L D + T WR
Sbjct: 427 RKAKDWAAADAARDRLNEMGIVLEDGPQGTTWR 459
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 | Back alignment and structure |
|---|
Score = 525 bits (1355), Expect = 0.0
Identities = 154/393 (39%), Positives = 211/393 (53%), Gaps = 36/393 (9%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQR 59
L+ L P +PR + ++ +I +I ++++N AY + GDVFF V + +YG+LS +
Sbjct: 103 EKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRH 162
Query: 60 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
L+ +AG RV V KR+P DF LWK AK GEP WDSPWG GRPGWHIECSAMS+ L
Sbjct: 163 LDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQ 222
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179
FDIHGGG+DL FPHHENEIAQS A + V WMH G + N EKMSKSLGN +IR+
Sbjct: 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIRE 282
Query: 180 ITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239
+ LR+FL+S HYR+PL+YS L++ A+ Y L+
Sbjct: 283 ALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRG-------------- 328
Query: 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
+ + + D F+ M DD NT F + ++ IN +
Sbjct: 329 --LPVVNHEKTSSYTDRFYEAMDDDFNTPIAFALLF-EMVREINRFRDN----------- 374
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
+ IE + E+K + I GLL + LQ K E +++ +LI++R A
Sbjct: 375 NQIEKAAVLAAELKCLGNIFGLLQYSP-EQFLQGAKK------EADVQEIKKLIDQRNEA 427
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R KD+ +DQIR LT G+A+ D T WR
Sbjct: 428 RAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWR 460
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 | Back alignment and structure |
|---|
Score = 500 bits (1291), Expect = e-176
Identities = 107/397 (26%), Positives = 176/397 (44%), Gaps = 32/397 (8%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
L + P S H+ + +++ + Y G+V+F +YG ++G L
Sbjct: 130 CRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDL 189
Query: 61 EN-NRAGERVAVDSRKRNPADFALW---KAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY 116
+ + RV VD KRN DF LW K E WDSPWG G P WH+EC+AM+ Y
Sbjct: 190 IDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEY 249
Query: 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFT 176
DIH GG+D I HH NEIA + ++H + + KMSKS GNF T
Sbjct: 250 FKDALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFIT 309
Query: 177 IRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE 235
++ + ++ + PL R+ +++HYR+ L +S+ L ++ A + L +L P
Sbjct: 310 VKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDL 369
Query: 236 HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 295
+ + + D F ++S DLN + L + + +K N S
Sbjct: 370 NTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLW-EIIKSDNLSFV-------- 420
Query: 296 QQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 355
+L L + I+ L + +++ + +E++ LIEE
Sbjct: 421 -SKLRLAFIFDE----------IMSL-------NLREEILKNLQNHDVVIDENMKALIEE 462
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R A+ K+F ++D+IR +KG L+D + T +
Sbjct: 463 RRIAKCEKNFKRADEIRDFFAKKGFVLVDTKEGTKVK 499
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-135
Identities = 87/297 (29%), Positives = 132/297 (44%), Gaps = 30/297 (10%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLS 56
MA L+ LPP +D + ++ +M+ +++ + AY+VE DV+F + + +G S
Sbjct: 117 MAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYES 176
Query: 57 GQRLENNRAGERVAVD----SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAM 112
G + K + D LW+A + GEPSW SP+G GRPGWH+ECSA+
Sbjct: 177 GYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAI 236
Query: 113 SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSL 171
+ + + DI GGG DLIFPHHE A + + + +++H G + + KMSKS
Sbjct: 237 ALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSR 296
Query: 172 GNFFTIRQI-TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230
GN + Q+ + P A+R L S HYR +S LD A+ + E
Sbjct: 297 GNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEA-- 354
Query: 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 287
P A D + ++DDL+T L S
Sbjct: 355 -------------PDATD----VIARVRQYLADDLDTPKALAALD-GWCTDALSYGG 393
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 6e-11
Identities = 60/455 (13%), Positives = 126/455 (27%), Gaps = 144/455 (31%)
Query: 1 MADLQC------LPPTYQPRVSDHMEQIKDMITQ------IINNDCAYVVEGDVFFAVEK 48
+ + C DH+ KD ++ + + +V+ F
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVL 87
Query: 49 SPNYGRLSGQ-RLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 107
NY L + E + + +R+ L+ + + + R ++
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDR----LY-----NDNQVFAKYNVSRLQPYL 138
Query: 108 E-----CSAMSAHYLSSKFDIHG-GGIDLIFPHHENEIAQSC---AACQDSNVS------ 152
+ A + I G G ++ C V
Sbjct: 139 KLRQALLELRPAKNVL----IDGVLGS-----------GKTWVALDVCLSYKVQCKMDFK 183
Query: 153 -YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLA----------------LRHFLIS 195
+W++ + + + + L QI + + LR L S
Sbjct: 184 IFWLNLKNCNSPETVL-EMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 196 AHYRSPLNYSVLQLDSASDA----VFYIY-QTL---QDCEVALS--------PFQEHGKT 239
Y + L L L + +A F + + L + +V +H
Sbjct: 241 KPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 240 ARINPAAED----CIN----KLRDE-----------FHARMSDDLNTSHILTGAFQDAL- 279
+ ++ L E + D L T D L
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 280 KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAY--SEVLQQLKDK 337
I SSLN+L+ E +++ L + PP A+ + +L +
Sbjct: 357 TIIESSLNVLE------------------PAEYRKMFDRLSVFPPSAHIPTILLSLI--- 395
Query: 338 ALKRAELTEEDVLQLIEE----RAAARKNKDFSKS 368
++ + DV+ ++ + ++ K+ + S
Sbjct: 396 ---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 6e-09
Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 20/204 (9%)
Query: 96 SPWGPGRPGWHIECSAMS---AHYLSSKF------DIHGGGIDLIFPHHENEIAQSCA-A 145
+ + + + + H + +F D G DLI H I A
Sbjct: 570 EEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIF 629
Query: 146 CQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 204
++ NG T +KMSKS GN E +R +++S + S ++
Sbjct: 630 REEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDW 689
Query: 205 SVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSD- 263
++ + Y+ + + A + + + I+ +NK E + +
Sbjct: 690 RRKEVGKLRKQIERFYELIS--QFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEF 747
Query: 264 DLNTSHILTGAFQDALKFINSSLN 287
T A Q A I + L
Sbjct: 748 RTRT------AVQWAFYSIMNDLR 765
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 6e-07
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 155 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI-SAHYRSPLNYSVLQLDSAS 213
NG T +KMSKS GN E +R +++ A + S ++ ++
Sbjct: 639 AVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLR 698
Query: 214 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFH---ARMSDDLNTSHI 270
+ Y+ + F E+ + D + + ++ L
Sbjct: 699 KQIERFYELISQ-------FAEYEVKGNVELKDID--RWMLHRLNKAIKETTNALEEFRT 749
Query: 271 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 319
T A Q A I + L ++ + + LR + +R++
Sbjct: 750 RT-AVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTL---ADVWVRLM 794
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 158 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
G T +KMSK+LGN ++ + Y +R+FL+
Sbjct: 287 GWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLL 323
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 158 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
G T +++K+SKSLGN F + + + AL++FL+
Sbjct: 331 GWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLM 367
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 158 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
G + N EKMSKS+GN ++ ERY LR+FL+
Sbjct: 313 GFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 158 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
G + N EKMSKS+GN + + + +R+FL+
Sbjct: 302 GWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL 338
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 158 GHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
G + + KMSK+LGN + E+Y ALR++L+
Sbjct: 288 GFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLL 325
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 157 NGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISAH-YRSPLNYS 205
+G + + +KMSKS GN I ++ ALR ++ + + +
Sbjct: 581 HGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 631
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195
+G+VT N KMSKS G F + +LR++ +
Sbjct: 336 HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTA 374
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 100.0 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 100.0 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.97 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 99.97 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 99.97 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 99.97 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 99.96 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 99.96 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 99.94 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.94 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 99.93 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 99.93 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.92 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 99.92 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 99.92 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 99.86 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 99.81 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 99.27 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 99.23 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 99.22 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 99.21 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 98.69 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 98.4 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 97.89 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 97.65 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 97.23 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 97.15 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 97.09 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 97.08 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 97.06 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 97.01 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 96.99 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 96.82 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 96.76 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 96.67 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 96.43 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 96.2 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 96.08 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 96.04 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 95.99 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 95.91 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 95.86 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 95.6 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 95.58 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 95.5 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 95.49 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 95.37 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 95.33 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 95.23 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 95.0 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 94.62 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 94.5 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 93.77 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 93.47 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 93.32 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 92.52 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 92.48 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 92.46 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 91.84 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 88.05 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 84.28 |
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-97 Score=756.05 Aligned_cols=358 Identities=42% Similarity=0.708 Sum_probs=258.7
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+||+|+||+.|+++|++|++||+||++ +|+|||||++|+.||+||+++++++..|+|++.+.+|+||.
T Consensus 103 ~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~ 182 (462)
T 3tqo_A 103 EKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPL 182 (462)
T ss_dssp HHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTT
T ss_pred HHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCcc
Confidence 56899999999999999999999999999999999999 79999999999999999999999999999999889999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||+|||++++|||+|+||||.||||||||||||+.++||.++|||+||.||+||||+|++||++|+++.||+++|+|+|+
T Consensus 183 DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~p~~~~w~H~g~ 262 (462)
T 3tqo_A 183 DFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEKPFVKLWMHAGL 262 (462)
T ss_dssp CEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSSCCEEEEEEECC
T ss_pred ccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCCCcceEEEEccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 239 (421)
|+++|+|||||+||||+|.|++++||+|++|||+|+++|+++++||++.+.++.+.+.+|++++.++. ... .
T Consensus 263 v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~----~~~----~ 334 (462)
T 3tqo_A 263 LEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLP----VVN----H 334 (462)
T ss_dssp EEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCC----C-------
T ss_pred EecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhh----hcc----c
Confidence 99999999999999999999999999999999999999999999999999999999999988876431 100 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHh
Q 014658 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 319 (421)
Q Consensus 240 ~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~il 319 (421)
..+..+.+.|.++|+||||++.|++. |+++++.+|.+++... ...+..+...+..+..+|
T Consensus 335 --------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~-----------~~~~~~~~~~~~~~~~vl 394 (462)
T 3tqo_A 335 --------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ-----------IEKAAVLAAELKCLGNIF 394 (462)
T ss_dssp -----------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHGGG
T ss_pred --------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc-----------HHHHHHHHHHHHHHHHhc
Confidence 01345678899999999999999999 9999999999876432 112234456788889999
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 320 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 320 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
||... .....++. . ...+.+++|+.||++|++||++|||++||+||++|.++||.|+|||+||+|++
T Consensus 395 g~~~~-~~~~~~~~---~---~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~~~g~~w~~ 461 (462)
T 3tqo_A 395 GLLQY-SPEQFLQG---A---KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWRQ 461 (462)
T ss_dssp TCSCS-CHHHHC--------------------------------------------------------------
T ss_pred CCCcc-chhhhhhc---c---ccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEcCCCcEEEe
Confidence 99764 22211110 0 01223467999999999999999999999999999999999999999999986
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-95 Score=742.61 Aligned_cols=363 Identities=29% Similarity=0.454 Sum_probs=271.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccc-hhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL-ENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~-~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+|++|+||++|+++|++|++||+||+++|+|||||++|+.||+||++++ +++..|+|+++++.|+||.
T Consensus 130 ~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~ 209 (501)
T 3sp1_A 130 CRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKT 209 (501)
T ss_dssp HHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTT
T ss_pred HHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCch
Confidence 568999999999999999999999999999999999999999999999999999999999 9999999998888999999
Q ss_pred ccccccc--c-cCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEe
Q 014658 80 DFALWKA--A-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 156 (421)
Q Consensus 80 DF~LWk~--~-~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h 156 (421)
||+|||+ . ++++|+|+||||.||||||||||+|+.+|||.++|||+||+||+||||+|||||++|++++||+++|+|
T Consensus 210 Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H 289 (501)
T 3sp1_A 210 DFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVH 289 (501)
T ss_dssp CEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEE
T ss_pred hhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHHHHHHHHHHccCCCCCeEEEE
Confidence 9999998 3 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHH----HHHHHHHHHHHHHhcC
Q 014658 157 NGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDA----VFYIYQTLQDCEVALS 231 (421)
Q Consensus 157 ~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~----l~~l~~~l~~~~~~~~ 231 (421)
+|||+++|+|||||+||||+|.|++++ ||+|++||||++.+|++|++||++.|.++.+. +.+|++.+..+.....
T Consensus 290 ~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~ 369 (501)
T 3sp1_A 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDL 369 (501)
T ss_dssp ECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred eeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999 99999999999999999999999999999999 7777776654321110
Q ss_pred CcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHH
Q 014658 232 PFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENE 311 (421)
Q Consensus 232 ~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~ 311 (421)
........ ..+ ...+..+.+.|.++|+||||++.|++. |+++++.+| + . . .. +...
T Consensus 370 ~~~~~~~~-~~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~~~~~~--~---~----~-------~~---~~~~ 425 (501)
T 3sp1_A 370 NTLNKDLK-NFG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEIIKSDN--L---S----F-------VS---KLRL 425 (501)
T ss_dssp HHHHSCTT-SCS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHCSS--S---C----H-------HH---HHHH
T ss_pred cccccccc-chh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHhc--c---C----H-------HH---HHHH
Confidence 00000000 011 123556788999999999999999999 999999875 1 1 0 01 1245
Q ss_pred HHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEE
Q 014658 312 VKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391 (421)
Q Consensus 312 l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W 391 (421)
+..++.+|||.+. ... +... .......++.|+.||++|++||++|||++||+||++|.++||.|+|+|+||+|
T Consensus 426 ~~~~~~vlGl~~~---~~~---~~~~-~~~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iRd~L~~~Gi~l~D~~~g~~w 498 (501)
T 3sp1_A 426 AFIFDEIMSLNLR---EEI---LKNL-QNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVDTKEGTKV 498 (501)
T ss_dssp HHHHHHHHCCCHH---HHH---HHHH-TTSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHcCCCcc---cch---hhcc-cccchhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcCCCcEE
Confidence 6677899999642 111 1000 00112345789999999999999999999999999999999999999999999
Q ss_pred EeC
Q 014658 392 RPC 394 (421)
Q Consensus 392 ~~~ 394 (421)
++.
T Consensus 499 ~~~ 501 (501)
T 3sp1_A 499 KRG 501 (501)
T ss_dssp ---
T ss_pred EeC
Confidence 863
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-86 Score=680.90 Aligned_cols=360 Identities=43% Similarity=0.715 Sum_probs=255.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+||+|+|++.|+++|++|+++|+||+. +|+|||||++|+.||+||++.++++..|++++.+..|+||.
T Consensus 100 ~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~ 179 (461)
T 1li5_A 100 FDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPM 179 (461)
T ss_dssp HHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTT
T ss_pred HHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCcc
Confidence 46899999999999999999999999999999999999 99999999999999999999999999999998888999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||+|||.+++|+|.|+||||.||||||||||+|+.+++|.++|||+||+||+||||+|||||++|+++.||+++|+|+||
T Consensus 180 Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~~~~~~~~h~g~ 259 (461)
T 1li5_A 180 DFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGM 259 (461)
T ss_dssp CEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCBCC
T ss_pred ceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhcCCCCCcEEEEeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999977899999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 239 (421)
|+++|+|||||+||||+|.|++++||+|++|||+|+++|++|++||++.+.++.+.+.+++|.+.++ .. ..+
T Consensus 260 v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~----~~----~~~ 331 (461)
T 1li5_A 260 VMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGT----DK----TVA 331 (461)
T ss_dssp EEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHHHHTTC----CT----TSC
T ss_pred EEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh----hc----CCC
Confidence 9999999999999999999999999999999999999999999999999999998888888877543 11 001
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHh
Q 014658 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 319 (421)
Q Consensus 240 ~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~il 319 (421)
+ + .+..+.+.|.++|+|+|+++.|++. |+++++.+|+|++. + . ..+..+...+..++.+|
T Consensus 332 -~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~~~~N~~~~~--~---~-------~~~~~~~~~~~~~~~~l 391 (461)
T 1li5_A 332 -P-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAE--D---M-------AAANAMASHLRKLSAVL 391 (461)
T ss_dssp -C-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHH--C---H-------HHHHHHHHHHHHHHTTT
T ss_pred -H-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHhc--c---H-------HHHHHHHHHHHHHHHHc
Confidence 1 2 3566788899999999999999999 99999999999965 2 1 13444567788899999
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 320 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 320 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
||... .....++ .... ...+..++++.||++|++||++|||++||+||++|.++||.|+|+|+||+|++
T Consensus 392 G~~~~-~~~~~~~---~~~~-~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~~g~~w~~ 460 (461)
T 1li5_A 392 GLLEQ-EPEAFLQ---SGAQ-ADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRR 460 (461)
T ss_dssp TCSCS-CHHHHC--------------------------------------------------------------
T ss_pred CCCcc-Chhhhhh---cccc-cccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcCCCcEEEe
Confidence 99542 1111110 0000 00001145889999999999999999999999999999999999999999985
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-66 Score=523.41 Aligned_cols=264 Identities=32% Similarity=0.533 Sum_probs=227.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC----CcEEEeccCCCCccccccccchhhhCC--CC-ccc-c
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEKSPNYGRLSGQRLENNRAG--ER-VAV-D 72 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~----~~vyf~v~~~~~Yg~ls~~~~~~~~~g--~~-v~~-~ 72 (421)
|++|||.+|+.++|+|+|++.|+++|++|+++|+||+.+ |+|||++++|++||+|++++.+++..+ .+ ++. +
T Consensus 117 ~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 196 (414)
T 3c8z_A 117 MAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDR 196 (414)
T ss_dssp HHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTC
T ss_pred HHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccc
Confidence 468999989999999999999999999999999999998 999999999999999999888776543 22 333 4
Q ss_pred ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCC
Q 014658 73 SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 151 (421)
Q Consensus 73 ~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~ 151 (421)
..|++|.||+|||...||+|.|+||||.|||||||||++|+.++||.++|||+||+||+||||+||+||++|+++. ||+
T Consensus 197 ~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~ 276 (414)
T 3c8z_A 197 PGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFA 276 (414)
T ss_dssp TTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSE
T ss_pred cccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCCcC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999765 899
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
++|+|+|||+++|+|||||+||+|+|.+++++ ||+|++||||++.+|++|++||++.+.++.+.+.+++|.+.++
T Consensus 277 ~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~---- 352 (414)
T 3c8z_A 277 RHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALP---- 352 (414)
T ss_dssp EEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----
T ss_pred eEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----
Confidence 99999999999999999999999999999999 9999999999999999999999999999999888888876432
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q 014658 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 284 (421)
Q Consensus 231 ~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~ 284 (421)
. . + .+..+.++|.++|+|+|++++|++. |+++++.+|+
T Consensus 353 ~----~----~-------~~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~ 390 (414)
T 3c8z_A 353 E----A----P-------DATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS 390 (414)
T ss_dssp C----B----S-------CCHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH
T ss_pred c----c----h-------hHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh
Confidence 1 0 0 1246678899999889999999999 9999999998
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=398.98 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=214.3
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEe--ccCCCCcccc--------ccccchhhhCCC-
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFA--VEKSPNYGRL--------SGQRLENNRAGE- 67 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~--v~~~~~Yg~l--------s~~~~~~~~~g~- 67 (421)
|++|||. ++.++|+|+ |++.+++++++|.++|+||.....|+|| ...+..++++ ++..++....++
T Consensus 84 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~w 162 (497)
T 2csx_A 84 WEFLKIE-YTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSY 162 (497)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEE
T ss_pred HHHhCCc-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCce
Confidence 4679994 789999999 9999999999999999999986555554 5556666666 333332221110
Q ss_pred Ccccc--------ccccCCCcccc----------cccccCCC-----CcccCCCCCCCC---CCchh---------hHHH
Q 014658 68 RVAVD--------SRKRNPADFAL----------WKAAKAGE-----PSWDSPWGPGRP---GWHIE---------CSAM 112 (421)
Q Consensus 68 ~v~~~--------~~K~~p~DF~L----------Wk~~~~~~-----~~w~spwg~grP---gWhie---------csam 112 (421)
.+.++ ..+++| +|.. |-.....+ |.|++|||.++| |||++ ||+|
T Consensus 163 f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~ 241 (497)
T 2csx_A 163 FFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL 241 (497)
T ss_dssp EECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTT
T ss_pred EEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccC
Confidence 00000 011122 1111 21111122 568999999999 89998 9998
Q ss_pred HH---hhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHH
Q 014658 113 SA---HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189 (421)
Q Consensus 113 ~~---~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~l 189 (421)
.. +++ |+|||++|+||+||||++|+|++++++.++|.++ +|||||+++|+|||||+||+|+|.|++++||+|++
T Consensus 242 ~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~-~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~Dal 318 (497)
T 2csx_A 242 EDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYELPKKV-FAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEV 318 (497)
T ss_dssp TTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE-EEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHH
T ss_pred CCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCCCCcEE-EECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHH
Confidence 66 566 8999999999999999999999999865555555 77899999999999999999999999999999999
Q ss_pred HHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q 014658 190 RHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSD 263 (421)
Q Consensus 190 R~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~d 263 (421)
|||+++ +++++|++||++.+.++.+. ++|+++++..+...... +..+...|.+++..+..+.+.+.++| +
T Consensus 319 R~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~---~~~~~~~d~~l~~~l~~~~~~v~~~~-~ 394 (497)
T 2csx_A 319 RYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLG---GEVSGARDEEYAKIAQESIKNYENYM-E 394 (497)
T ss_dssp HHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHST---TCBCCCCCTTHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHHHHHHHHH-H
Confidence 999999 69999999999999887643 34555544332211111 11113467899999999999999999 9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHhhhcccCchh--hhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 264 DLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ--QQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 264 d~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~--~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+|+++.|++. |++|++.+|+|++..+||.... ........+..+..+++.++.+|.
T Consensus 395 ~~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~ 452 (497)
T 2csx_A 395 KVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLY 452 (497)
T ss_dssp TTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999999999994111 111122334444555555555555
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=388.14 Aligned_cols=280 Identities=19% Similarity=0.165 Sum_probs=211.5
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEe--ccCCCCcccc-------ccccchhhhCCC--
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFA--VEKSPNYGRL-------SGQRLENNRAGE-- 67 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~--v~~~~~Yg~l-------s~~~~~~~~~g~-- 67 (421)
|++|||. +|.++|+|+ |++.+++++++|.++|++|...+.++|| +..+..+++| ++..++....++
T Consensus 82 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf 160 (500)
T 2d5b_A 82 WDLLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYF 160 (500)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEE
T ss_pred HHHhCCc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceE
Confidence 4679994 799999999 9999999999999999999986556555 4445556655 232222111110
Q ss_pred -Ccc------ccccccCCCccccccccc--------CC--C-----CcccCCCCCCCC---------------------C
Q 014658 68 -RVA------VDSRKRNPADFALWKAAK--------AG--E-----PSWDSPWGPGRP---------------------G 104 (421)
Q Consensus 68 -~v~------~~~~K~~p~DF~LWk~~~--------~~--~-----~~w~spwg~grP---------------------g 104 (421)
++. ++..+++| ||..|+..+ ++ + |.|+++||.++| |
T Consensus 161 ~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g 239 (500)
T 2d5b_A 161 FRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALD 239 (500)
T ss_dssp ECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTT
T ss_pred EEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcC
Confidence 000 01123444 666654321 22 2 446889999999 8
Q ss_pred CchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHh
Q 014658 105 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 183 (421)
Q Consensus 105 Whiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~ 183 (421)
||++|+ ..+++ |.|||++|+||+||||++|+|++++++.++| +.|+|||||+. +|+|||||+||+|+|.|++++
T Consensus 240 ~~~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~-~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~ 314 (500)
T 2d5b_A 240 YPEGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGIPMY-RHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK 314 (500)
T ss_dssp TTTCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTCCCC-SEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH
T ss_pred CCCCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCCCCC-cEEEECceEEeCCCCcccccCCCCCCHHHHHHh
Confidence 999997 55666 6799999999999999999999999855454 55578899999 999999999999999999999
Q ss_pred cCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHHHHH-HHhcCCcccCCCCCCCChHHHHHHHHHHHH
Q 014658 184 YHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDC-EVALSPFQEHGKTARINPAAEDCINKLRDE 256 (421)
Q Consensus 184 yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~-~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~ 256 (421)
||+|++|||+++ +++++|++||++.+.++.+. ++|+.+++..+ ....... .+...+++++..+.++.+.
T Consensus 315 ~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~ 390 (500)
T 2d5b_A 315 YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGR----IPEPVAGEELAEGTGLAGR 390 (500)
T ss_dssp HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB----CCCCCCCGGGGGGGGHHHH
T ss_pred cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHHH
Confidence 999999999998 69999999999999887642 34544443221 1111111 1111246788888999999
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 257 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 257 v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
+.++| ++|+++.|++. |++|++.+|.|++..+||.
T Consensus 391 v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~ 425 (500)
T 2d5b_A 391 LRPLV-RELKFHVALEE-AMAYVKALNRYINEKKPWE 425 (500)
T ss_dssp HHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchh
Confidence 99999 99999999999 9999999999999999995
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=385.29 Aligned_cols=284 Identities=19% Similarity=0.196 Sum_probs=219.4
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--CCCcccc------------ccccchh--
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNYGRL------------SGQRLEN-- 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--~~~Yg~l------------s~~~~~~-- 62 (421)
|++|||. ++.++|+|+ |++.+++++++|.++|++|..++.||||+.+ |..|+++ ++..++.
T Consensus 91 ~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~ 169 (524)
T 2x1l_A 91 QEKLNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTE 169 (524)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEE
T ss_pred HHHcCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEe
Confidence 4679995 799999999 9999999999999999999999999999987 5556553 3322210
Q ss_pred ------------------hhCC-CCcccccc--------ccCCCcccc------cccccCCCCc-----c-cCCC----C
Q 014658 63 ------------------NRAG-ERVAVDSR--------KRNPADFAL------WKAAKAGEPS-----W-DSPW----G 99 (421)
Q Consensus 63 ------------------~~~g-~~v~~~~~--------K~~p~DF~L------Wk~~~~~~~~-----w-~spw----g 99 (421)
+..+ ..+..+.. +++..|+++ |...-|+++. | +|+| |
T Consensus 170 ~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~ 249 (524)
T 2x1l_A 170 EQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTG 249 (524)
T ss_dssp EEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred cCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHH
Confidence 0001 00101111 234556666 5443343322 4 7777 5
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHH
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~d 179 (421)
.|+|+ +|+++..+++ |+|||++|+||+||||++|+|++++++.++|.++|+| |||+.+|+|||||+||+|+|.|
T Consensus 250 ~g~p~---~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v~p~d 323 (524)
T 2x1l_A 250 VGFPD---TESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVVDPVN 323 (524)
T ss_dssp TTTTC---TTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESSCHHH
T ss_pred cCCCC---CchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCCCHHH
Confidence 66666 7888888887 7999999999999999999999999877778889777 9999999999999999999999
Q ss_pred HHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHHHHH-HHhcCCccc-CCCCCCCChHHHHHHH
Q 014658 180 ITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDC-EVALSPFQE-HGKTARINPAAEDCIN 251 (421)
Q Consensus 180 ll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~-~~~~~~~~~-~~~~~~~d~~l~~~l~ 251 (421)
++++||+|++|||+++ +++++|++||++.+.++.+. ++|+.+++..+ ...+..... .......|++++..+.
T Consensus 324 ~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 403 (524)
T 2x1l_A 324 LVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAAD 403 (524)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHH
Confidence 9999999999999999 69999999999999987654 55665554322 222221111 0111234678889999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 252 ~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
.+.+.+.++| ++|+++.|++. |++|++.+|.|++..+||.
T Consensus 404 ~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~ 443 (524)
T 2x1l_A 404 ALLERVREHF-DVPAMHLALEA-IWSVLGAANRYFSAQEPWV 443 (524)
T ss_dssp THHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhcCChh
Confidence 9999999999 99999999999 9999999999999999984
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=379.13 Aligned_cols=330 Identities=15% Similarity=0.097 Sum_probs=237.4
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC------------------CCccccc---c
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------------PNYGRLS---G 57 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~------------------~~Yg~ls---~ 57 (421)
|++|||. +|.++|+|+ |+..++.++++|.++|++|...+.||||+.+. ..||.+. +
T Consensus 82 ~~~lgis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G 160 (722)
T 1rqg_A 82 FQRAKIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCG 160 (722)
T ss_dssp HHHHTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSC
T ss_pred HHHhCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcc
Confidence 3578995 899999987 99999999999999999999999999999875 2466542 1
Q ss_pred ccc--hhh------hCCCCcccccccc----------CCCccc---ccccc---------cCCCCcc----cCCCCCCCC
Q 014658 58 QRL--ENN------RAGERVAVDSRKR----------NPADFA---LWKAA---------KAGEPSW----DSPWGPGRP 103 (421)
Q Consensus 58 ~~~--~~~------~~g~~v~~~~~K~----------~p~DF~---LWk~~---------~~~~~~w----~spwg~grP 103 (421)
..+ .++ ..|++++....+. ...|+. .|... +.|.+-| +.+||.++|
T Consensus 161 ~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP 240 (722)
T 1rqg_A 161 RPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVP 240 (722)
T ss_dssp CCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCS
T ss_pred cccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccC
Confidence 211 112 2455544322111 111111 26554 4566667 899999999
Q ss_pred ----CCc-----------hhhHHHHH-------------hhcC--C--CceEEeecccCcCcchHHHHHHHHhcc-----
Q 014658 104 ----GWH-----------IECSAMSA-------------HYLS--S--KFDIHGGGIDLIFPHHENEIAQSCAAC----- 146 (421)
Q Consensus 104 ----gWh-----------iecsam~~-------------~~lg--~--~~Dih~gG~Dli~pH~~~~~a~~~a~~----- 146 (421)
||| |+|.+++. +|++ . ..++|++|+||+|||+.+|||++++++
T Consensus 241 ~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~ 320 (722)
T 1rqg_A 241 LDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDE 320 (722)
T ss_dssp CCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSS
T ss_pred ccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCccc
Confidence 688 77766553 3554 2 245999999999999999999999986
Q ss_pred ----CCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----H
Q 014658 147 ----QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----V 216 (421)
Q Consensus 147 ----~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l 216 (421)
+.++++.|+|||||+++|+|||||+||||+|.+++++||+|++||||++. ++++|++||++.+.++.|. +
T Consensus 321 d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l 400 (722)
T 1rqg_A 321 EVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNL 400 (722)
T ss_dssp SCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTH
T ss_pred ccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 32333556888999999999999999999999999999999999999996 9999999999999887652 5
Q ss_pred HHHHHHHH-HHHHhcCCcccC-CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 014658 217 FYIYQTLQ-DCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 294 (421)
Q Consensus 217 ~~l~~~l~-~~~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~ 294 (421)
+|+.+++. ++...+....+. ......|++++..+..+...+.++| ++|+++.|++. |++|++.+|+|++..+||..
T Consensus 401 ~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~ 478 (722)
T 1rqg_A 401 GNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQPWKT 478 (722)
T ss_dssp HHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhh
Confidence 66665543 233333221110 1112346789999999999999999 99999999999 99999999999999999952
Q ss_pred hhhh-hhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 295 KQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 295 ~~~~-~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.+.. .....+++.+++.++.++.+|. |+|. ..+++++++
T Consensus 479 ~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~-~aeei~~~L 519 (722)
T 1rqg_A 479 AKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLL 519 (722)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHc
Confidence 1111 1122344444555555555555 3443 344555544
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=368.15 Aligned_cols=312 Identities=17% Similarity=0.160 Sum_probs=217.8
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC------------CccccccccchhhhCC
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP------------NYGRLSGQRLENNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~------------~Yg~ls~~~~~~~~~g 66 (421)
|++|||. +|.+.|+++ |+..+++++.+|.++|++|...+.||||+++-. .+|...+. ....|
T Consensus 88 ~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~---~~~sg 163 (542)
T 3u1f_A 88 FEQMDYS-IDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKV---SLESG 163 (542)
T ss_dssp HHHHTCC-CSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEE---ETTTC
T ss_pred HHHhCCc-cCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccc---cCCCC
Confidence 4678996 688888874 999999999999999999999999999997643 23332111 12345
Q ss_pred CCcccccc------------------ccCCCcccccccccC--------CC--------CcccCCCCCCCCC--------
Q 014658 67 ERVAVDSR------------------KRNPADFALWKAAKA--------GE--------PSWDSPWGPGRPG-------- 104 (421)
Q Consensus 67 ~~v~~~~~------------------K~~p~DF~LWk~~~~--------~~--------~~w~spwg~grPg-------- 104 (421)
.+++.... +.++ ++..|...+. +. .+|..+||...||
T Consensus 164 ~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~v 242 (542)
T 3u1f_A 164 HVVTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYV 242 (542)
T ss_dssp CBEEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECH
T ss_pred CcceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeee
Confidence 55442211 1122 3333322110 11 1245568877776
Q ss_pred CchhhHH--HHH------------------hhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCC
Q 014658 105 WHIECSA--MSA------------------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN 164 (421)
Q Consensus 105 Whiecsa--m~~------------------~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G 164 (421)
|.-.... .+. ....+|.|+|++|+|++|||+++|+|++++.+.++ ++.++|||||+.+|
T Consensus 243 w~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~-~~~v~~hg~l~~~G 321 (542)
T 3u1f_A 243 WLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPL-PKKIVAHGWWTKDR 321 (542)
T ss_dssp HHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCC-CSCEEEECCCEETT
T ss_pred eeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcccc-cceeccccceecCC
Confidence 4321111 111 11235889999999999999999999999986544 45557789999999
Q ss_pred cccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCCccc----CC
Q 014658 165 EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQE----HG 237 (421)
Q Consensus 165 ~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~--l~~l~~~l~~~~~~~~~~~~----~~ 237 (421)
+|||||+||||+|.|++++||+|++||||++ +++++|++||++.+.++.+. +++|+|.+.++......... ..
T Consensus 322 ~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~ 401 (542)
T 3u1f_A 322 KKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPA 401 (542)
T ss_dssp BCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCC
T ss_pred ceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 9999999999999999999999999999998 58999999999999887653 23455554444332221111 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHH
Q 014658 238 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVL 316 (421)
Q Consensus 238 ~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l 316 (421)
.....|+++++.++.+.+.+.++| ++|++++|++. |++|++.+|.|++..+||...+.. +....+++.++++++.++
T Consensus 402 ~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~ 479 (542)
T 3u1f_A 402 AYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTT 479 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 123357899999999999999999 99999999999 999999999999999999522211 122233444444444444
Q ss_pred hHhc
Q 014658 317 RILG 320 (421)
Q Consensus 317 ~ilG 320 (421)
.+|.
T Consensus 480 ~ll~ 483 (542)
T 3u1f_A 480 LLLS 483 (542)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4444
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=340.11 Aligned_cols=310 Identities=19% Similarity=0.176 Sum_probs=209.1
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchh-------hhCCCCccc
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN-------NRAGERVAV 71 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~-------~~~g~~v~~ 71 (421)
|++|||. ++.++|+|+ |++.|++++++|.++|++|+.++.||||+++...|+. ..+.+ ...|.+++.
T Consensus 104 l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~---~~~~~~~~g~~c~~~g~~~e~ 179 (536)
T 4dlp_A 104 AEVLNSS-NDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGE---EETEVRADGVRYGPQGTPVEW 179 (536)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECG---GGCEECTTSCEECTTSSBCEE
T ss_pred HHHcCCC-CCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCH---HHhhcCCCCCcccCCCCcceE
Confidence 4679998 578889987 9999999999999999999999999999988765543 11110 012333322
Q ss_pred cc------------------cccCCCcccc----------cccccCCCCcc-----cCCCCCCCCC--------CchhhH
Q 014658 72 DS------------------RKRNPADFAL----------WKAAKAGEPSW-----DSPWGPGRPG--------WHIECS 110 (421)
Q Consensus 72 ~~------------------~K~~p~DF~L----------Wk~~~~~~~~w-----~spwg~grPg--------Whiecs 110 (421)
.. .+.+| +|.. |-. .+..-| +-+||...|| |.-...
T Consensus 180 ~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~--~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~ 256 (536)
T 4dlp_A 180 VEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVK--SGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALT 256 (536)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHH--TCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHH
T ss_pred EeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHh--cCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcH
Confidence 11 11122 2211 211 122223 2459988886 443222
Q ss_pred HHHHh--h--------cCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHH
Q 014658 111 AMSAH--Y--------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180 (421)
Q Consensus 111 am~~~--~--------lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dl 180 (421)
++... + -++|.|+|+.|+||++||+.+|++++++++.++|.++++| |||+.+|+|||||+||+|+|.|+
T Consensus 257 ~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~h-g~v~~~G~KMSKS~GNvi~p~d~ 335 (536)
T 4dlp_A 257 NYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAH-GFLFNRGEKMSKSVGNVIDPFEL 335 (536)
T ss_dssp HHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEE-CCEEC------------CCHHHH
T ss_pred HHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEee-eeEeeCCceecccCCCCCCHHHH
Confidence 22110 0 1247899999999999999999999999877788888665 99999999999999999999999
Q ss_pred HHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHH-HHHHHhcCCcccC-CCCCCCChHHHHHHHH
Q 014658 181 TERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTL-QDCEVALSPFQEH-GKTARINPAAEDCINK 252 (421)
Q Consensus 181 l~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l-~~~~~~~~~~~~~-~~~~~~d~~l~~~l~~ 252 (421)
+++||+|++|||+++ .++++|++||++.+.+..+. ++|+.+++ ..+...+.+..+. ......|++++..+.+
T Consensus 336 i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~ 415 (536)
T 4dlp_A 336 VERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADA 415 (536)
T ss_dssp HHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHH
Confidence 999999999999999 59999999999999886542 45555443 2333333322111 1123457899999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHhHhc
Q 014658 253 LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 253 ~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+.+.+.++| ++|++++|++. +++|+..+|+|++..+||...... ..+..++..+.++++.++.+|.
T Consensus 416 ~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~ 482 (536)
T 4dlp_A 416 ALETARKAM-DDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQ 482 (536)
T ss_dssp HHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 89999999999 999999999999999999522211 1223345555566666666666
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=343.76 Aligned_cols=285 Identities=17% Similarity=0.166 Sum_probs=209.1
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchh------------hhCC
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN------------NRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~------------~~~g 66 (421)
|++|||. ++.++|+|+ |++.|++++++|.++|++|...+.+|||+++...|.. +.+.+ ...|
T Consensus 105 ~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~---~~~~~~~~~~g~~c~~~~~~g 180 (564)
T 3kfl_A 105 FQEMNYD-MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTA---QNVADGVDRDGKPCKVSLESG 180 (564)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECG---GGEEEEECTTSCEEEEETTTS
T ss_pred HHHcCCC-CCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCH---HHhccCcCCCCCEeccccCCC
Confidence 3579997 678999984 9999999999999999999999999999988654332 11100 0135
Q ss_pred CCccccc------------------cccCCCcccccccc--------cCCC----Ccc----cCCCCCCCCC--------
Q 014658 67 ERVAVDS------------------RKRNPADFALWKAA--------KAGE----PSW----DSPWGPGRPG-------- 104 (421)
Q Consensus 67 ~~v~~~~------------------~K~~p~DF~LWk~~--------~~~~----~~w----~spwg~grPg-------- 104 (421)
.+++... .+.+| +|...... +.|. ++. +-.||...||
T Consensus 181 ~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yV 259 (564)
T 3kfl_A 181 HVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYV 259 (564)
T ss_dssp CBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECH
T ss_pred CccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEE
Confidence 5443211 11222 22211100 0122 233 4568888886
Q ss_pred CchhhHHHHH--hh-----------------cCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCc
Q 014658 105 WHIECSAMSA--HY-----------------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNE 165 (421)
Q Consensus 105 Whiecsam~~--~~-----------------lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~ 165 (421)
|.-....+.. .| -.+|.|+|+.|+||++||+.+|||++++++.++|.++++| |||+.+|+
T Consensus 260 WfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~h-g~v~~~G~ 338 (564)
T 3kfl_A 260 WLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERLVSH-GWWTKDHK 338 (564)
T ss_dssp HHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEE-CCEEETTE
T ss_pred eccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEEEEc-ccEeeCCc
Confidence 4332221111 11 1347899999999999999999999999987788888655 99999999
Q ss_pred ccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHhcCCc---ccC-CC
Q 014658 166 KMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSPF---QEH-GK 238 (421)
Q Consensus 166 KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~--~l~~l~~~l~~~~~~~~~~---~~~-~~ 238 (421)
|||||+||||+|.+++++||+|++||||++ .++++|++||++.+.+..| .+.+++|.+.++...+... .+. ..
T Consensus 339 KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~~~~ 418 (564)
T 3kfl_A 339 KISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAE 418 (564)
T ss_dssp ECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCC
T ss_pred cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCC
Confidence 999999999999999999999999999999 6999999999999988765 2334455444443333211 111 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 239 ~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
....|++++..+..+.+.+.++| ++|++++|++. |++|++.+|+|++..+||.
T Consensus 419 ~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~ 471 (564)
T 3kfl_A 419 YSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIA-IFDVLRSLNAYVTENAPWK 471 (564)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHHHHHHhcCChh
Confidence 12356889999999999999999 89999999999 9999999999999999995
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=332.41 Aligned_cols=314 Identities=14% Similarity=0.100 Sum_probs=214.5
Q ss_pred CCCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCC------------------ccccc----
Q 014658 1 MADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN------------------YGRLS---- 56 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t--~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~------------------Yg~ls---- 56 (421)
|++|||. ++.+.+.+ +|...+++++++|.++|++|..++.||||+.+... ||...
T Consensus 97 ~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg 175 (560)
T 3h99_A 97 FAGFNIS-YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCG 175 (560)
T ss_dssp HHHTTCC-CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTC
T ss_pred HHHcCCC-CCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhcc
Confidence 4679997 57777777 69999999999999999999999999999875432 22211
Q ss_pred ----cccchh---hhCCCCccccccccCC---Cccc---------------------cccccc--CCCCcccC-CCCCCC
Q 014658 57 ----GQRLEN---NRAGERVAVDSRKRNP---ADFA---------------------LWKAAK--AGEPSWDS-PWGPGR 102 (421)
Q Consensus 57 ----~~~~~~---~~~g~~v~~~~~K~~p---~DF~---------------------LWk~~~--~~~~~w~s-pwg~gr 102 (421)
+.++.+ ...|++++....+.-- .+|+ -|-... +-.++.+. .||...
T Consensus 176 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~i 255 (560)
T 3h99_A 176 ATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEI 255 (560)
T ss_dssp CBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBC
T ss_pred ccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeC
Confidence 011100 1223333211100000 0010 011111 11123344 579888
Q ss_pred CC--------CchhhHHHHHh---hc---C--------CCce-----EEeecccCcCcchHHHHHHHHhccCCCCCcEEE
Q 014658 103 PG--------WHIECSAMSAH---YL---S--------SKFD-----IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 155 (421)
Q Consensus 103 Pg--------Whiecsam~~~---~l---g--------~~~D-----ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~ 155 (421)
|+ |.-....+... +. | +|.| +|++|+||++||+.+|+|++++++.++|.++++
T Consensus 256 P~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~ 335 (560)
T 3h99_A 256 PNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFV 335 (560)
T ss_dssp TTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEE
T ss_pred CCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCCCCcEEEE
Confidence 85 54333322111 10 1 2456 999999999999999999999988776677766
Q ss_pred eeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCC-CCcccCHHHHHHHHHH-----HHHHHHHHH-HHH
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA-----VFYIYQTLQ-DCE 227 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~-~d~~fs~e~l~~~~~~-----l~~l~~~l~-~~~ 227 (421)
| |||+.+|+|||||+||||+|.|++++||+|++||||++. +.. +|++|+++.+.+..+. ++|+.+++. .+.
T Consensus 336 h-g~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~ 414 (560)
T 3h99_A 336 H-GYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFIN 414 (560)
T ss_dssp E-CCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHH
T ss_pred E-eEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999996 556 8999999998875432 234443322 222
Q ss_pred HhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh---hhhhhHHH
Q 014658 228 VALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ---QQLSLIES 304 (421)
Q Consensus 228 ~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~---~~~~~~~~ 304 (421)
..+.... .....|++++..++.+.+.+.++| ++|+++.|++. +++|++.+|+|++..+||...+ ....+..+
T Consensus 415 ~~~~~~~---~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~ 489 (560)
T 3h99_A 415 KRFDGVL---ASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRDADLQAI 489 (560)
T ss_dssp HHSTTBC---CSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHH
T ss_pred HhcCCCC---CCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcHHHHHHH
Confidence 2222111 113468899999999999999999 89999999999 9999999999999999994111 11223344
Q ss_pred HHHHHHHHHHHHhHhcc
Q 014658 305 LRKIENEVKEVLRILGL 321 (421)
Q Consensus 305 l~~~~~~l~~~l~ilGi 321 (421)
+..+..+++.++.+|..
T Consensus 490 ~~~~~~~l~~~~~lL~P 506 (560)
T 3h99_A 490 CSMGINLFRVLMTYLKP 506 (560)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55566777777777773
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=328.19 Aligned_cols=299 Identities=11% Similarity=0.026 Sum_probs=216.5
Q ss_pred CCCCCCCCCCcccccccc--HHHHHHHHHHHHHcCCee-----eeCCcEEEeccCCCCccccccccchhhhCCCCccccc
Q 014658 1 MADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDS 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~--i~~i~~~i~~L~~~g~aY-----~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~ 73 (421)
|++|||. .|.++|.|++ ++.|.+++++|.++|++| +.+|.+||++++|.+...| |.+|.
T Consensus 227 ~~~LgI~-~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l----------~~~vi--- 292 (592)
T 1iq0_A 227 MHALNAR-YDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLED----------PFFVL--- 292 (592)
T ss_dssp HHHTTCC-CSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSC----------CEEEE---
T ss_pred HHHcCCE-eEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCC----------CceEE---
Confidence 3679997 5999999998 999999999999999999 7899999998865322121 22221
Q ss_pred cccC------CCcc--cccc-------cccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHH
Q 014658 74 RKRN------PADF--ALWK-------AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE 138 (421)
Q Consensus 74 ~K~~------p~DF--~LWk-------~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~ 138 (421)
.|.| .+|| ++|| ..+ ++|++||| |||||++|++|....++..++||+++-+.-|+++
T Consensus 293 ~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~--r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~--- 364 (592)
T 1iq0_A 293 LRSNGTATYYAKDIAFQFWKMGILEGLRFR---PYENPYYP--GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV--- 364 (592)
T ss_dssp ECTTSCBCHHHHHHHHHHHHTTSSCCCEEE---ECCCSSCT--TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH---
T ss_pred EecCCceEEecchHHHHHHHhhhhhhhhhh---hhhcCcch--hhcccccCcccCCCCCCEEEEEEeccHHHHHHHH---
Confidence 1222 3466 8897 433 36899997 9999999999987677777888887655444443
Q ss_pred HHHHHhccCCCC-CcEEEee--eeeeeCCcccccccCCccCHHHHHHh-------------------------cCchHHH
Q 014658 139 IAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLGNFFTIRQITER-------------------------YHPLALR 190 (421)
Q Consensus 139 ~a~~~a~~~~~~-~~~~~h~--g~l~~~G~KMSKSlGN~i~~~dll~~-------------------------yg~D~lR 190 (421)
.+.+.+++. ++ .+.|.|. |||+++|+|||||+||+|++.|++++ ||+|++|
T Consensus 365 ~~~~~alG~-~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiR 443 (592)
T 1iq0_A 365 RAALALAGY-PALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIR 443 (592)
T ss_dssp HHHHHHTTC-HHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHH
Confidence 233344443 44 3445565 88999999999999999999999999 9999999
Q ss_pred HHHhhcCCCCCcccCHHHHHHHHH----HHHHHHHHHHHHH-HhcCCcccC-CCCCCCChHHHHHHHHHHHHHHHHHHhc
Q 014658 191 HFLISAHYRSPLNYSVLQLDSASD----AVFYIYQTLQDCE-VALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDD 264 (421)
Q Consensus 191 ~~ll~~~~~~d~~fs~e~l~~~~~----~l~~l~~~l~~~~-~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd 264 (421)
||+|+.++++|++||++.+.+..+ .++..+.|+..+. ......... ....+.+..++..+..+.+.+.+++ ++
T Consensus 444 yf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~ 522 (592)
T 1iq0_A 444 FSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EE 522 (592)
T ss_dssp HHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HH
T ss_pred HHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999999987654 2333333333222 111100000 0011223567778888999999999 99
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhhcc-----cC--ch-hhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 265 LNTSHILTGAFQDALKFINSSLNMLKK-----KQ--PK-QQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 265 ~~~~~Al~~~l~~~~~~~N~yi~~~~p-----w~--~~-~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
++++.++.. |+++++.+|+|++.++| |- +. .....++.++.++..+|...|.+|||.+.
T Consensus 523 ~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 523 RTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp TCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999 99999999999999954 42 11 12335677888999999999999999754
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=300.75 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=154.6
Q ss_pred CCCCCCCCCCccccccc-cHH-HHHHHHHHHHHcC----------------CeeeeCCcEEEeccCC-CCccccccccch
Q 014658 1 MADLQCLPPTYQPRVSD-HME-QIKDMITQIINND----------------CAYVVEGDVFFAVEKS-PNYGRLSGQRLE 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~-~i~-~i~~~i~~L~~~g----------------~aY~~~~~vyf~v~~~-~~Yg~ls~~~~~ 61 (421)
|+.||| .|+.+ |.|+ |++ .++++|++|+++| ++|.. + ||+++.+ +.+|+++ +
T Consensus 115 l~~Lgi-~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~~~~~~~~~~----~ 185 (523)
T 1irx_A 115 VEKLGI-EVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMVYCPEHRREA----E 185 (523)
T ss_dssp HHTTTC-CCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEEECTTTCCEE----C
T ss_pred HHHcCC-CceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccccchhhCCcc----c
Confidence 468999 58999 9999 999 9999999999999 77765 2 8877654 3444432 1
Q ss_pred hhhCCCCccccccccCCCcccccccccCCCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcc----hH
Q 014658 62 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH----HE 136 (421)
Q Consensus 62 ~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH----~~ 136 (421)
+ ++.++ .+|.+|.+ ++|++.|.++| |.||||||++| +|...+||..+| ++|+||++|| |.
T Consensus 186 ~------~~~~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~G~Dh~~~h~s~~~~ 250 (523)
T 1irx_A 186 I------IEWDG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PAGKDHLVAGSSYDTG 250 (523)
T ss_dssp E------EEECS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CEEHHHHSTTSHHHHH
T ss_pred c------cccCC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CCCcCccCCCcchhhH
Confidence 1 22222 26788988 57889999999 99999999999 899999986555 8999999999 89
Q ss_pred HHHHHHHhccCCCCCcEEEeeeeeeeC--CcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHH-HHHHHH
Q 014658 137 NEIAQSCAACQDSNVSYWMHNGHVTNN--NEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL-QLDSAS 213 (421)
Q Consensus 137 ~~~a~~~a~~~~~~~~~~~h~g~l~~~--G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e-~l~~~~ 213 (421)
++++| .|++.++| +|+|+|||+.+ |+|||||+||+|+|.++++.|++|++||||++.+++++++||++ .+.++.
T Consensus 251 ~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 251 KEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLY 327 (523)
T ss_dssp HHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEECCSTTHHHHH
T ss_pred HHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCCCceeCcchhHHHHH
Confidence 99997 57765555 67999999987 89999999999999999999999999999999899999999999 888888
Q ss_pred HHHHHHHHHH
Q 014658 214 DAVFYIYQTL 223 (421)
Q Consensus 214 ~~l~~l~~~l 223 (421)
+.+.++++.+
T Consensus 328 ~~~~~~~~~~ 337 (523)
T 1irx_A 328 DEFEKVERIY 337 (523)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776643
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-33 Score=294.73 Aligned_cols=296 Identities=15% Similarity=0.064 Sum_probs=214.8
Q ss_pred CCCCCCCCCCcccccccc--HHHHHHHHHHHHHcCCee-----eeCCcEEEeccCCCCccccccccchhhhCCCCccccc
Q 014658 1 MADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDS 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~--i~~i~~~i~~L~~~g~aY-----~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~ 73 (421)
|++|||. .|.+++.|+| ++.|.++|++|.++|++| +.+|.+||++++|.....+ |.+|.
T Consensus 257 ~~~L~I~-~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~----------~~~v~--- 322 (629)
T 2zue_A 257 TYKLGVK-YDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN----------PILVL--- 322 (629)
T ss_dssp HHHHTCC-CSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC----------CEEEE---
T ss_pred HHHcCCc-cccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc----------CceEE---
Confidence 3579997 5999999998 999999999999999999 7899999999876322111 22222
Q ss_pred cccC------CCcc--cccc--------cccCC-C-CcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcch
Q 014658 74 RKRN------PADF--ALWK--------AAKAG-E-PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 135 (421)
Q Consensus 74 ~K~~------p~DF--~LWk--------~~~~~-~-~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~ 135 (421)
.|+| ++|| ++|| +.++. + +++.+|||.|||| +...++..++||++|.+.-|.+
T Consensus 323 ~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d~~IyV~g~~q~~~~~~- 393 (629)
T 2zue_A 323 RRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPN--------KFGNANIVINVIGAEQKHPQLA- 393 (629)
T ss_dssp ECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTT--------SSCCCSEEEEEEEGGGHHHHHH-
T ss_pred EecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCC--------ccCCCCcEEEEEeCcHhhHHHH-
Confidence 2333 4577 8897 44432 3 3445999999999 2334555678888776643333
Q ss_pred HHHHHHHHhccCCCC-CcEEEee--eeeeeCCcccccccC--CccCHHHHHHh---------------------------
Q 014658 136 ENEIAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLG--NFFTIRQITER--------------------------- 183 (421)
Q Consensus 136 ~~~~a~~~a~~~~~~-~~~~~h~--g~l~~~G~KMSKSlG--N~i~~~dll~~--------------------------- 183 (421)
..+.+.+++. ++ .+.|.|. |||+++|.|||||+| |+|++.|++++
T Consensus 394 --l~~~l~~lG~-~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~ 470 (629)
T 2zue_A 394 --IKYALQLLGF-EDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEK 470 (629)
T ss_dssp --HHHHHHHTTC-HHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred --HHHHHHHcCC-CCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence 2333444443 44 3345555 899999999999999 99999999999
Q ss_pred cCchHHHHHHhhcCCCCCcccCHHHHHHHHH----HH----HHHHHHHHHHHHhcCC------cccCC--CCCCCChHHH
Q 014658 184 YHPLALRHFLISAHYRSPLNYSVLQLDSASD----AV----FYIYQTLQDCEVALSP------FQEHG--KTARINPAAE 247 (421)
Q Consensus 184 yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~----~l----~~l~~~l~~~~~~~~~------~~~~~--~~~~~d~~l~ 247 (421)
+|+|++|||+|+.++++|++||++.+.+..+ .+ .|+.+.++........ ..... ...+.+..++
T Consensus 471 vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~ 550 (629)
T 2zue_A 471 VGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELV 550 (629)
T ss_dssp HHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHH
T ss_pred cChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHH
Confidence 9999999999999999999999999975432 23 3343434332111000 00000 1122335678
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 248 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 248 ~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
..+..+.+.+.+++ ++++++.++.. |++++..+|+|++.+....+.. ....++.++.++..+|...|.+|||.+.
T Consensus 551 ~~l~~fp~~v~~a~-~~~~p~~l~~y-l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 551 IMLSKFPRIVEQAG-KDVKPHLIAWF-ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHH-HTTCTHHHHHH-HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88999999999999 89999999999 9999999999999986654222 2345788889999999999999999754
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=286.32 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=155.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhh-c
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~ 196 (421)
+|+|+|++|+||+||||.|+++++.++.+. ++++.|+|||||+.+|+|||||+||||+|.+++++||+|++|||+++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 489999999999999999999999998874 67688899999999999999999999999999999999999999985 6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 276 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~ 276 (421)
++++|++||++.+..+.+.+.+++|.++++.... ..........|++++..++.+.+.+.++| ++|+++.|+..+++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE--VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC--CCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc--CcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 9999999999999999888899998877653211 00011112346788999999999999999 99999999986157
Q ss_pred HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 277 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 277 ~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
.+++.+|.|++..++-. .......+...+..++.+|.
T Consensus 759 ~l~~~~n~yi~~~k~~~-------~~~~~~~l~~~l~~l~~lLa 795 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGRD-------DEAKRYVLRTLADVWVRLMA 795 (810)
T ss_dssp HHHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcc-------hhHHHHHHHHHHHHHHHHHh
Confidence 99999999998876311 11112344455666666665
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=294.07 Aligned_cols=205 Identities=18% Similarity=0.168 Sum_probs=163.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhh-c
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~ 196 (421)
+|+|+|++|+||+||||.|+++++.|+++. ++++.|+|||||+.+|+|||||+||||+|.+++++||+|++||||++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 489999999999999999999999998875 66677799999999999999999999999999999999999999985 6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 276 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~ 276 (421)
++++|++|+++.+.++.+.+.+++|.++++... . ..........|++++..++.+..++.++| ++|+|+.|+..+++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-E-VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS-C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC-C-CCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999999999999988765321 1 00111122356899999999999999999 99999999986146
Q ss_pred HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 277 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 277 ~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.+++.+|.|++..++-. +.....++..++..++.+|. |+|- ..+++++.+
T Consensus 759 ~l~~~~n~Yi~~~k~~~-------~~~~~~~l~~~l~~l~~LLaP~~P~-~aEeiw~~L 809 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGRD-------DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKL 809 (967)
T ss_dssp HHHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHS
T ss_pred HHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHhccccch-HHHHHHHhc
Confidence 89999999998876311 11223345566666777776 3443 455566655
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=282.19 Aligned_cols=227 Identities=21% Similarity=0.253 Sum_probs=177.4
Q ss_pred CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 98 WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 98 wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
|...+-||.-+ ..-..++ +|.|+|++|+||+|||+.+.++++.++.+. ||.++++| |+|+ .+|+|||||+||+|
T Consensus 462 ~~~~~~~~p~~-~~~~~~~--~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~h-G~vld~~G~KMSKSlGNvI 537 (862)
T 1gax_A 462 WPLSTLGWPEE-TEDLKAF--YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH-GLVLDEKGQKMSKSKGNVI 537 (862)
T ss_dssp CTTGGGTTTSC-CHHHHHS--CSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEE-CCEECTTSCBCCTTTTCCC
T ss_pred cchhhccCCCc-hHHHHhh--CCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEe-eeEEcCCCCCccccCCCCC
Confidence 55555667522 1222333 499999999999999999999999988875 88999887 8887 69999999999999
Q ss_pred CHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCCCChHHHHHHHHH
Q 014658 176 TIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-HGKTARINPAAEDCINKL 253 (421)
Q Consensus 176 ~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~-~~~~~~~d~~l~~~l~~~ 253 (421)
+|.|++++||+|++||||++. ++++|++||++.+..+.+.+.+++|.++++...+..+.. .......|++++..++.+
T Consensus 538 dP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~~~~~~~~D~~il~~l~~~ 617 (862)
T 1gax_A 538 DPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRG 617 (862)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999985 999999999999999999899999988766555443211 011233568999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHH
Q 014658 254 RDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEV 330 (421)
Q Consensus 254 ~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~ 330 (421)
...+.++| ++|+++.|++. |++|+ ..+|.|++..+||... . +.....++..++..++.+|. |+|- ..+++
T Consensus 618 ~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~-~---~~~~~~~l~~~l~~~~~lL~P~~P~-~aEei 690 (862)
T 1gax_A 618 VEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPALKA-G---NAHTLRTLEEVLAVLLKLLHPMMPF-LTSEL 690 (862)
T ss_dssp HHHHHHHH-TTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHT-T---BHHHHHHHHHHHHHHHHHHTTTSHH-HHHHH
T ss_pred HHHHHHHH-HccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhc-c---HHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH
Confidence 99999999 99999999999 99999 4789999999987311 0 12233445566667777776 3443 45566
Q ss_pred HHHHH
Q 014658 331 LQQLK 335 (421)
Q Consensus 331 ~~~~~ 335 (421)
++.+.
T Consensus 691 w~~L~ 695 (862)
T 1gax_A 691 YQALT 695 (862)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 66654
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=280.19 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=166.6
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+|||+.+..+++.++++. ||+++|+| |+|+ .+|+|||||+||||+|.|++++||+|++||||++.
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~ 621 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVS 621 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhC
Confidence 489999999999999999999999998775 88999988 8877 59999999999999999999999999999999996
Q ss_pred -CCCCCcccCHHHHHHH-HHHHHHHHHHHHHHHH--hcCCccc-----CCCCCCCChHHHHHHHHHHHHHHHHHHhccCh
Q 014658 197 -HYRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEV--ALSPFQE-----HGKTARINPAAEDCINKLRDEFHARMSDDLNT 267 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~-~~~l~~l~~~l~~~~~--~~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~ 267 (421)
++++|++||++.+.++ .+.+.+++|.++++.. .+..+.. .......|++++..++.+.+.+.++| ++|++
T Consensus 622 ~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f 700 (821)
T 1ile_A 622 APPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDP 700 (821)
T ss_dssp SCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCH
T ss_pred CCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCH
Confidence 7999999999999984 6667888888765431 1211111 01112346788999999999999999 89999
Q ss_pred HHHHHHHHHHHH--HHHHHHHhhhc--ccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 268 SHILTGAFQDAL--KFINSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 268 ~~Al~~~l~~~~--~~~N~yi~~~~--pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
++|++. |++|+ ..+|.|++..+ ||.... ...+...+.++..++..++.+|. |+|- ..+++++.+.
T Consensus 701 ~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~-~aeelw~~L~ 770 (821)
T 1ile_A 701 TTSARA-LRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTPF-LAEVLWQNLV 770 (821)
T ss_dssp HHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTT-HHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHHHcCCccch-HHHHHHHhcc
Confidence 999999 99999 67899998875 474221 11122344455667777788887 4565 5677777664
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=273.23 Aligned_cols=212 Identities=18% Similarity=0.142 Sum_probs=166.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+|+|+...+++++++.+. ||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||++++
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~ 625 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST 625 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTS
T ss_pred CCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhcc
Confidence 589999999999999988888888888775 78999777 99995 9999999999999999999999999999999999
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--C----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE--H----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 270 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~--~----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~A 270 (421)
+|++|++||++.++++.+.+.+|+|.++++...+..+.. . ......|++++..++.+.+++.++| ++|+++.|
T Consensus 626 ~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a 704 (917)
T 1ffy_A 626 DYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNI 704 (917)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHH-HccCHHHH
Confidence 999999999999999888889999998877666544321 0 0112356889999999999999999 99999999
Q ss_pred HHHHHHHHHH--HHHHHHhhhcccC--chhhhhhhHHHHHHHHHHHHHHHhHhcc-CCCCChHHHHHHH
Q 014658 271 LTGAFQDALK--FINSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQL 334 (421)
Q Consensus 271 l~~~l~~~~~--~~N~yi~~~~pw~--~~~~~~~~~~~l~~~~~~l~~~l~ilGi-~~~~~~~~~~~~~ 334 (421)
++. |++|+. ..|.|++..+||. .......+.....++...+..++.+|.. +|- ..+++++.+
T Consensus 705 ~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~-~aEeiw~~l 771 (917)
T 1ffy_A 705 YQE-VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH-TAEEVWSHT 771 (917)
T ss_dssp HHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHTTS
T ss_pred HHH-HHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHc
Confidence 999 999998 6788999888852 1111111222233344555566666663 332 344455444
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-28 Score=250.66 Aligned_cols=197 Identities=17% Similarity=0.165 Sum_probs=146.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----CCCccccc---cccch-------hhhCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRLS---GQRLE-------NNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~~~Yg~ls---~~~~~-------~~~~g 66 (421)
|+.||+.+ +..+++|+|++.+++++++|+++|+||. +|++.. +..+|..+ +++.+ ++..|
T Consensus 155 L~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G 228 (553)
T 3aii_A 155 LEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM 228 (553)
T ss_dssp HHHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS
T ss_pred HHHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC
Confidence 35689985 7899999999999999999999999995 676554 44456554 33333 45666
Q ss_pred CC------cc--ccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc---ch
Q 014658 67 ER------VA--VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP---HH 135 (421)
Q Consensus 67 ~~------v~--~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p---H~ 135 (421)
.+ +. ....+.++.||+|||....++|.|-..|. |+|+||++|+ +|.|.+|+++++. |+
T Consensus 229 ~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~~----------vDD~~~GIThviRG~D~~ 297 (553)
T 3aii_A 229 KEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSVA----------VDDHLLGVTHVLRGKDHL 297 (553)
T ss_dssp CTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHHH----------HHHHHTTCCEEEC-----
T ss_pred CcCceEEEEEcccccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeeee----------eeeccCCCceEeccHhhh
Confidence 42 22 23345688999999987777786444442 7999999994 5667777777777 99
Q ss_pred HHHHHHH--HhccCCCCCcEEEeeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchHHHHHHhhcC
Q 014658 136 ENEIAQS--CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAH 197 (421)
Q Consensus 136 ~~~~a~~--~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~~-yg~D~lR~~ll~~~ 197 (421)
.+.++|. ..+.+.+++++| |+++|+++|.|||||+|| +.++.++.++ |.|+++|.||++.+
T Consensus 298 ~nt~~Q~~l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G 376 (553)
T 3aii_A 298 ANREKQEYLYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376 (553)
T ss_dssp CHHHHHHHHHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 9999998 344455677785 999999999999999998 7889999986 99999999999988
Q ss_pred C-CCCcccCHHHHHHHHHH
Q 014658 198 Y-RSPLNYSVLQLDSASDA 215 (421)
Q Consensus 198 ~-~~d~~fs~e~l~~~~~~ 215 (421)
| +++.+||++.|..+.+.
T Consensus 377 ~s~~~~~~s~~~L~~~~r~ 395 (553)
T 3aii_A 377 VKIADSTMSWKKIYGLNRS 395 (553)
T ss_dssp TCSSCBCCCHHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHH
Confidence 8 78999999999887654
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=250.15 Aligned_cols=273 Identities=12% Similarity=0.050 Sum_probs=202.3
Q ss_pred CCCCCCCCCCccccccccH-HHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccC--
Q 014658 1 MADLQCLPPTYQPRVSDHM-EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRN-- 77 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i-~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~-- 77 (421)
|++|||.. +.+++.|+|+ +.|.++|+.|.++|++|+.+|.+||++++| |+ +++ .+| -.|+|
T Consensus 281 ~~~L~V~f-D~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~----~~d-----~~v---~~KsDG~ 344 (607)
T 1f7u_A 281 YARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NK----KLG-----KAI---VQKSDGT 344 (607)
T ss_dssp HHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CT----TTC-----EEE---EECTTSC
T ss_pred HHHcCCcc-eeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEeccc---CC----CCC-----cee---EeccCCC
Confidence 46799975 9999999999 899999999999999999999999999876 43 111 011 12333
Q ss_pred ----CCcc--cccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCC
Q 014658 78 ----PADF--ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 151 (421)
Q Consensus 78 ----p~DF--~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~ 151 (421)
++|| ++||..+ ..++..++||++|.|+.|+++. +.+.+++ .++.
T Consensus 345 ~~Y~t~Dia~~~~k~~~--------------------------~~~d~~IyV~g~~q~~~f~q~~---~~~~~lG-~~~~ 394 (607)
T 1f7u_A 345 TLYLTRDVGAAMDRYEK--------------------------YHFDKMIYVIASQQDLHAAQFF---EILKQMG-FEWA 394 (607)
T ss_dssp CCHHHHHHHHHHHHHHH--------------------------HCCSEEEEECCGGGHHHHHHHH---HHHHHTT-CGGG
T ss_pred cCCCCCcHHHHHHHHhh--------------------------cCCCcEEEEEcChHhhHHHHHH---HHHHHcC-CCcC
Confidence 3344 4454321 1455678999999999888763 3444554 3677
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHhcCc----------------------------hHHHHHHhhcCCCCCcc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHP----------------------------LALRHFLISAHYRSPLN 203 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~----------------------------D~lR~~ll~~~~~~d~~ 203 (421)
++|+|.++.+++ |||||+||+|++.|++++++. .++|||+|+.+++++++
T Consensus 395 ~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~ 472 (607)
T 1f7u_A 395 KDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYE 472 (607)
T ss_dssp GGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEE
T ss_pred cEEEEecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 789999997776 699999999999999998833 47999999999999999
Q ss_pred cCHHHHHHHHH--------HHHHHHHHHHHHHHhcCCc--ccCC---CCCCCChHHHHHHHHHHHHHHHHHHhccChHHH
Q 014658 204 YSVLQLDSASD--------AVFYIYQTLQDCEVALSPF--QEHG---KTARINPAAEDCINKLRDEFHARMSDDLNTSHI 270 (421)
Q Consensus 204 fs~e~l~~~~~--------~l~~l~~~l~~~~~~~~~~--~~~~---~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~A 270 (421)
|+++.+..... .+.|+.+.++...+ +... .... ...+.+..++..+.++.+.+..++ ++++++.+
T Consensus 473 Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~-~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l 550 (607)
T 1f7u_A 473 FKWERMLSFEGDTGPYLQYAHSRLRSVERNASG-ITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTV 550 (607)
T ss_dssp CCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTT-SCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHH
T ss_pred cCHHHHHHHhccchHHHHHHHHHHHHHHHHhcC-CCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHH
Confidence 99999976542 12344444433210 0000 0000 112223567788888999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 271 LTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 271 l~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
+.. +++++..+|+|++.+....+.. ....++.++.++..+|...|.+|||.+.
T Consensus 551 ~~Y-l~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 551 VTY-LFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHH-HHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999 9999999999999987764322 2346888999999999999999999764
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=248.53 Aligned_cols=213 Identities=16% Similarity=0.135 Sum_probs=158.2
Q ss_pred cccCCCCCCCCCCchhh-----HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc------c-CCCCCcEEEeeeee
Q 014658 93 SWDSPWGPGRPGWHIEC-----SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA------C-QDSNVSYWMHNGHV 160 (421)
Q Consensus 93 ~w~spwg~grPgWhiec-----sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~------~-~~~~~~~~~h~g~l 160 (421)
+.+|.|...|-+|.-.. ..-...++ |+|+++||+||...|..|-.....++ . .+||+++ ++||||
T Consensus 513 w~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmV 589 (880)
T 4arc_A 513 FMESSWYYARYTCPQYKEGMLDSEAANYWL--PVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMV 589 (880)
T ss_dssp TTGGGTHHHHTTSTTCCSSSCCHHHHHHHC--SEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCE
T ss_pred cccCcHHHHhhcCCCccccccChHHHhccC--CceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceE
Confidence 34688887777765321 12233344 99999999999999988876554332 1 2588888 556999
Q ss_pred e--------eCCc------------------------------------ccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 161 T--------NNNE------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 161 ~--------~~G~------------------------------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+ .+|+ |||||+||||+|.|++++||+|++|||+|+.
T Consensus 590 l~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~ 669 (880)
T 4arc_A 590 LADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFA 669 (880)
T ss_dssp EEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHS
T ss_pred eecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhc
Confidence 5 3565 9999999999999999999999999999996
Q ss_pred -CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ-EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
+|++|++||++.++.+.+.+.++||.+.++........ ........|++++..+++++++|.++|+++|+|+.|++.
T Consensus 670 ~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~- 748 (880)
T 4arc_A 670 SPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA- 748 (880)
T ss_dssp SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-
Confidence 99999999999999999999999998876543211100 001112346889999999999999999548999999999
Q ss_pred HHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 275 FQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 275 l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
|++|++.+|+|... . ......+..++..++.+|..
T Consensus 749 l~efvn~l~k~~~~------~------~~~~~~l~~~l~~ll~LLaP 783 (880)
T 4arc_A 749 IMELMNKLAKAPTD------G------EQDRALMQEALLAVVRMLNP 783 (880)
T ss_dssp HHHHHHHHHTSCCS------S------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcc------c------hHHHHHHHHHHHHHHHHHhh
Confidence 99999998876311 0 01122345566677777773
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-27 Score=242.71 Aligned_cols=197 Identities=19% Similarity=0.148 Sum_probs=160.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----C----CCccccc---cccc-------hh
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S----PNYGRLS---GQRL-------EN 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~----~~Yg~ls---~~~~-------~~ 62 (421)
|+.||+.+++..+++|+|++.+.+++++|+++|+||. +|++.. + ..+|..+ ++.. ++
T Consensus 85 L~wLGl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~ 159 (553)
T 1qtq_A 85 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK 159 (553)
T ss_dssp HHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHH
T ss_pred HHHcCCCCCCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHH
Confidence 4579999999999999999999999999999999996 565432 1 1356544 2223 24
Q ss_pred hhCCC--------C--ccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC
Q 014658 63 NRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 132 (421)
Q Consensus 63 ~~~g~--------~--v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~ 132 (421)
+..|. | ++....+.++.||+|||...+++|.|.++| .|+|+||+.|+ +|.|.+|+++++
T Consensus 160 m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHvi 228 (553)
T 1qtq_A 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSL 228 (553)
T ss_dssp HHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEE
T ss_pred HhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEe
Confidence 56675 3 344567889999999999888999999999 79999999874 788999999999
Q ss_pred ---cchHHHHHHH---HhccCCCCCcEEEeeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchHHH
Q 014658 133 ---PHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALR 190 (421)
Q Consensus 133 ---pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~~-yg~D~lR 190 (421)
+||.|.++|. .|++...++++| |+|||+++|.|||||+|| ++++.++.++ |.|+++|
T Consensus 229 Rg~e~~~n~~~q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAir 307 (553)
T 1qtq_A 229 CTLEFQDNRRLYDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIR 307 (553)
T ss_dssp EEGGGTTTHHHHHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHH
T ss_pred eccchhhhHHHHHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHH
Confidence 9999999998 566433367887 889999999999999997 7899999976 9999999
Q ss_pred HHHhhcCCCCCcc-cCHHHHHHHHH
Q 014658 191 HFLISAHYRSPLN-YSVLQLDSASD 214 (421)
Q Consensus 191 ~~ll~~~~~~d~~-fs~e~l~~~~~ 214 (421)
.||++.+|....+ +++..|.+..+
T Consensus 308 nfl~~lG~s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 308 EFCKRIGVTKQDNTIEMASLESCIR 332 (553)
T ss_dssp HHHHHHCCCSSCCCBCHHHHHHHHH
T ss_pred HHHHHcCCCCCccccchhhHHHHHH
Confidence 9999988765444 78888877543
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=220.66 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=186.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
++|||. -|.+..=|.....|-+.++.|.++|++|+.+|.++|+++. ||. +| |+
T Consensus 156 ~~l~V~-fD~~~~Ess~~~~~~~vv~~L~~~g~~~e~dGa~~~~~~~---~g~-------------------~~----~~ 208 (464)
T 3fnr_A 156 EQAKIK-IDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQ---KGD-------------------EK----DR 208 (464)
T ss_dssp HHTTCC-CSCEEEGGGGSTTHHHHHHHHHHTTCEEEETTEEEECGGG---GTC-------------------SS----CE
T ss_pred HHhCCC-ceeecCHHHHHHHHHHHHHHHHHCCCEEEeCCeEEEEecc---cCC-------------------CC----ce
Confidence 467886 4555443332337888999999999999999999998764 331 11 45
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhhc-CCCceEEeecccCcCcchHHHHHHHHhccCCCCCc-EEEeeee
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYL-SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS-YWMHNGH 159 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~l-g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~-~~~h~g~ 159 (421)
+|=|. +|.+.+.++ ..++...++- |..--|++.|.|+.- |..-..+.+.+++..| .+ ..+++|+
T Consensus 209 vl~ks--DG~~~Y~t~----------DiA~~~~r~~~~~d~~Iyv~G~dq~~-~f~~l~~~l~~lG~~~-~~~~h~~~g~ 274 (464)
T 3fnr_A 209 VIIRE--DGRGTYLAA----------DIVYHKDKMSRGYGKCINIWGADHHG-YIPRMKAAMEFLGFDS-NNLEIILAQM 274 (464)
T ss_dssp EEECT--TSCBCHHHH----------HHHHHHHHHTSSCSEEEEEEEGGGGG-GHHHHHHHHHTTTCCG-GGEEEEEECC
T ss_pred EEEeC--CCceehhhH----------HHHHHHHHHHcCCCeEEEEecCcHHH-HHHHHHHHHHHcCCCc-cceEEEEeee
Confidence 65543 454433222 2223333331 322348899999552 3333334444554443 34 4467799
Q ss_pred eee--CCc--ccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHH-----HHHHHHHHHHHHHHhc
Q 014658 160 VTN--NNE--KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD-----AVFYIYQTLQDCEVAL 230 (421)
Q Consensus 160 l~~--~G~--KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~~~~~~~ 230 (421)
|++ +|+ |||||+||+|+|.|+++++|+|++|||+++.++++|++|+++.+.+..+ .++..+.|+..+....
T Consensus 275 V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~ 354 (464)
T 3fnr_A 275 VSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKA 354 (464)
T ss_dssp EEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 965 785 9999999999999999999999999999999999999999999866432 1222233333222211
Q ss_pred C--Cccc-C---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCch-hhhhhhHH
Q 014658 231 S--PFQE-H---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIE 303 (421)
Q Consensus 231 ~--~~~~-~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~-~~~~~~~~ 303 (421)
. .... . ......+.+++..+.++.+.+.+++ +++++++++.. |++++..+|+|++.++...+. .....++.
T Consensus 355 ~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~vl~~~~~~~~aRL~ 432 (464)
T 3fnr_A 355 GKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAF-EARALQKIPDY-LKNLAANFHKFYNENKVVGSANENDLLKLF 432 (464)
T ss_dssp TCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCCCTTSTTHHHHHHHH
T ss_pred hccCCCccccChhhCChHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCcCCCCCHHHHHHHHH
Confidence 1 1100 0 0111126788889999999999999 99999999999 999999999999998775422 23345777
Q ss_pred HHHHHHHHHHHHHhHhccCCC
Q 014658 304 SLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 304 ~l~~~~~~l~~~l~ilGi~~~ 324 (421)
++.++ +|...|.+|||.+.
T Consensus 433 L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 433 SLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHH--HHHHHHHhcCCCch
Confidence 77777 99999999999765
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-26 Score=242.87 Aligned_cols=196 Identities=16% Similarity=0.106 Sum_probs=155.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------CCCcccccc-cc--c-------hh
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPNYGRLSG-QR--L-------EN 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------~~~Yg~ls~-~~--~-------~~ 62 (421)
|+.||+.+++..+++|+|++.+++++++|+++|+||. +|++.. ...||..|+ ++ . ++
T Consensus 125 L~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~ 199 (851)
T 2hz7_A 125 LKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRR 199 (851)
T ss_dssp HHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHH
T ss_pred HHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHH
Confidence 3569999999999999999999999999999999995 565532 122566542 21 2 34
Q ss_pred hhCCC--------C--ccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC
Q 014658 63 NRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 132 (421)
Q Consensus 63 ~~~g~--------~--v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~ 132 (421)
+..|. | ++....+.++.||+|||...+++|.|.+|| .|+|+||++|+ +|.|.+|+++++
T Consensus 200 m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v----------VDD~~~GITHVi 268 (851)
T 2hz7_A 200 MKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP----------LQDAIEGVTHSM 268 (851)
T ss_dssp HHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHHTCSEEE
T ss_pred HhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE----------eeeccCCcceee
Confidence 56675 3 445567889999999999888999999999 89999999996 456667777766
Q ss_pred c---chHHHHHHH---HhccCCCCCcEEEeeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchHHH
Q 014658 133 P---HHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALR 190 (421)
Q Consensus 133 p---H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~~-yg~D~lR 190 (421)
. |+.|.++|. .|++....+++| |++||.++|.|||||+|| ++++.++.++ |.|+++|
T Consensus 269 RG~D~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr 347 (851)
T 2hz7_A 269 CSLEFVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVR 347 (851)
T ss_dssp EEGGGTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHH
T ss_pred cchhhhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHH
Confidence 6 899999997 666433226776 779999999999999997 6789999976 9999999
Q ss_pred HHHhhcCCCC-CcccCHHHHHHHH
Q 014658 191 HFLISAHYRS-PLNYSVLQLDSAS 213 (421)
Q Consensus 191 ~~ll~~~~~~-d~~fs~e~l~~~~ 213 (421)
.||++.+|.. +..+++..+....
T Consensus 348 ~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 348 AFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp HHHHHSCCCSSCEEECHHHHHHHH
T ss_pred HHHHhcCCCCCcccccHHHHHHHH
Confidence 9999987753 4457888877543
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-25 Score=239.72 Aligned_cols=230 Identities=13% Similarity=0.073 Sum_probs=151.4
Q ss_pred CCceEEeecccCcCcchHHHHHHH---Hhc---cC-CCCCcEEEeeeeeee-----------------------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQS---CAA---CQ-DSNVSYWMHNGHVTN----------------------------- 162 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~---~a~---~~-~~~~~~~~h~g~l~~----------------------------- 162 (421)
.|+|+++||+|+...|..|-.... ..+ .+ .||++++.| |||+-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~-G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQ-GMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPES 608 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECC-CCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCS
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheec-ceEeccceeccccccccceeccccccccccccCc
Confidence 399999999999877766644333 222 22 588999555 99974
Q ss_pred ------------------CC-------cccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHHH
Q 014658 163 ------------------NN-------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAV 216 (421)
Q Consensus 163 ------------------~G-------~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~l 216 (421)
+| +|||||+||+|+|.|++++||+|++|||+++ +++++|++||++.++.+.+.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l 688 (878)
T 2v0c_A 609 ALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFL 688 (878)
T ss_dssp EEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHH
T ss_pred hhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHH
Confidence 89 9999999999999999999999999999999 699999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-C--cccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 217 FYIYQTLQDCEVALS-P--FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 217 ~~l~~~l~~~~~~~~-~--~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
.+++|.+......+. . ..........|++++..++++.+.+.++| ++|+|+.|++. |++|++.+|+|.+..+
T Consensus 689 ~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~-l~~f~~~l~k~~~~~~--- 763 (878)
T 2v0c_A 689 NRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLNALYEYRKDRP--- 763 (878)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHhhhcccch---
Confidence 999998765433220 0 00001113456899999999999999999 99999999999 9999999999975421
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHHHHHHH--------hhccCHHHHHHHHHHHHHHhcCCC
Q 014658 294 PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKDKALK--------RAELTEEDVLQLIEERAAARKNKD 364 (421)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~Li~~R~~aR~~K~ 364 (421)
. . ..+..++..++.+|. |+|- ..+++++.+++.... ...+..+.+..+++.|...|..-.
T Consensus 764 -~-----~----~~l~~~l~~l~~LLaPf~P~-~aEElw~~Lg~~sv~~~~wP~~d~~~l~~~~~~~~vqvngkvR~~i~ 832 (878)
T 2v0c_A 764 -V-----T----PVYRTAIRYYLQMLFPFAPH-LAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIH 832 (878)
T ss_dssp -S-----C----HHHHHHHHHHHHHHTTTSHH-HHHHHHHHHCSSCGGGSCCCCCCGGGGC-------------------
T ss_pred -h-----H----HHHHHHHHHHHHHHcccchH-HHHHHHHHcCCCceeecCCCCCCHHHHHHHHHHHHHhhHHHHHHHcc
Confidence 0 0 123455566666666 3333 345555554300000 001123455666666666665444
Q ss_pred h
Q 014658 365 F 365 (421)
Q Consensus 365 f 365 (421)
.
T Consensus 833 v 833 (878)
T 2v0c_A 833 I 833 (878)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-22 Score=205.34 Aligned_cols=185 Identities=17% Similarity=0.187 Sum_probs=139.4
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEecc-----------------CCCC-ccccccccc-h
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-----------------KSPN-YGRLSGQRL-E 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~-----------------~~~~-Yg~ls~~~~-~ 61 (421)
|+.|||.++...++.|+|++.+.+++++|+++|+||. +||+. .++. |+.||.... +
T Consensus 60 L~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~ 134 (492)
T 2cfo_A 60 LQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAA 134 (492)
T ss_dssp HHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHH
T ss_pred HHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHH
Confidence 3569998777789999999999999999999999995 66654 3433 555665422 3
Q ss_pred hhhCCC----Ccccc----------------ccccCC-CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCC
Q 014658 62 NNRAGE----RVAVD----------------SRKRNP-ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120 (421)
Q Consensus 62 ~~~~g~----~v~~~----------------~~K~~p-~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~ 120 (421)
.+..|. |+..+ ..+.++ .||+|||..+ || |.|+|+||++|+
T Consensus 135 ~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v---------- 196 (492)
T 2cfo_A 135 FEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV---------- 196 (492)
T ss_dssp HHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------
T ss_pred HHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------
Confidence 344554 32222 246678 8999999853 56 799999999996
Q ss_pred ceEEeecccCcCc---chHHHHHHHH---hccCCCCCcEEEeeeee-eeCCcccccccCCccCHHHHHHh-cCchHHHHH
Q 014658 121 FDIHGGGIDLIFP---HHENEIAQSC---AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITER-YHPLALRHF 192 (421)
Q Consensus 121 ~Dih~gG~Dli~p---H~~~~~a~~~---a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ 192 (421)
+|.|.+|+++++. |+.|.+.|.. |++. +++ .|+|.+++ ..+|+|||||.||+ ++.++.+. |.|+++|.|
T Consensus 197 vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~-~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~ 273 (492)
T 2cfo_A 197 VDDIAMGITDVIRGEDHIGNTPKQILLYEALGA-TPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANY 273 (492)
T ss_dssp HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTC-CCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHH
T ss_pred hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCC-CCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHH
Confidence 6777788888887 9999999984 4443 334 67999995 57999999999997 88999874 999999999
Q ss_pred HhhcCCCC----CcccCHHHHHH
Q 014658 193 LISAHYRS----PLNYSVLQLDS 211 (421)
Q Consensus 193 ll~~~~~~----d~~fs~e~l~~ 211 (421)
|+.-.+.. .--||.+.+.+
T Consensus 274 l~~lG~s~~~~~~e~~~~~e~i~ 296 (492)
T 2cfo_A 274 MTLLGWSPPEGVGELFTLDLAAK 296 (492)
T ss_dssp HHHTTBCCCTTTCSCCCHHHHHH
T ss_pred HHHhCCCCCCccccccCHHHHHh
Confidence 98854432 33467666543
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-20 Score=183.02 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=108.8
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee---------CCcEEEeccCC-CCccccc---------cccch
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV---------EGDVFFAVEKS-PNYGRLS---------GQRLE 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~---------~~~vyf~v~~~-~~Yg~ls---------~~~~~ 61 (421)
|+.|||.++...++.|+|++.+.+++++|+++|+||.- .|.+|+.+-++ +.||+.+ ....+
T Consensus 64 L~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~ 143 (298)
T 1nzj_A 64 LEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFT 143 (298)
T ss_dssp HHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEE
T ss_pred HHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCccccee
Confidence 35799998777999999999999999999999999974 46699988776 6788766 23344
Q ss_pred hhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHH
Q 014658 62 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 141 (421)
Q Consensus 62 ~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~ 141 (421)
++..|. ++.+ .+.++.||+|||+ .|+|+||++|++ .....|.+.+|| |.| |+.|.++|
T Consensus 144 D~~~G~-~~~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D----~l~~t~~q 201 (298)
T 1nzj_A 144 DQLRGI-IHAD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GAD----LIEPTVRQ 201 (298)
T ss_dssp ETTTEE-EECC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGG----GHHHHHHH
T ss_pred hhhCcc-cccC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccc----ccccHHHH
Confidence 555554 3322 3457789999995 589999999977 677889999999 899 78999999
Q ss_pred HH--hccCCCCCcEEEeeeee-eeCCcccccccCCc
Q 014658 142 SC--AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNF 174 (421)
Q Consensus 142 ~~--a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~ 174 (421)
.. .+.+.+++++ +|.+++ ..+|+|||||.||+
T Consensus 202 ~~l~~alG~~~p~~-~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 202 ISLYQLFGWKVPDY-IHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp HHHHHHHTCCCCEE-EEECBCCC-------------
T ss_pred HHHHHHcCCCCCeE-EEeeeeECCCCCcccccCCcc
Confidence 86 3445566667 899998 58999999999997
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=123.59 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=104.2
Q ss_pred ccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC--------------CCc-cccccccchh------hhCCCC---
Q 014658 13 PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNY-GRLSGQRLEN------NRAGER--- 68 (421)
Q Consensus 13 ~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~--------------~~Y-g~ls~~~~~~------~~~g~~--- 68 (421)
.+.|++++.+.+++++|+++|.||.- |++... +.| |.+|.+++.. +..|..
T Consensus 92 y~QS~r~~~y~~~a~~L~~~G~aY~c-----~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~i 166 (481)
T 2o5r_A 92 YRQSERVEIYREHAERLVKEGKAYYV-----YAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAV 166 (481)
T ss_dssp CBGGGGHHHHHHHHHHHHHTTSEEEE-----CCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEE
T ss_pred eeeeccHHHHHHHHHHHHHCCCeeEe-----cCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceE
Confidence 47899999999999999999999953 222210 012 2233444321 123321
Q ss_pred -cc---------------ccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC
Q 014658 69 -VA---------------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 132 (421)
Q Consensus 69 -v~---------------~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~ 132 (421)
.. +.....+..||+|||.. |.|.||+.|. +..+..| ++.-+-|.|
T Consensus 167 R~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsD-------------G~ptY~~a~v-vDD~~~g--ithvirG~D--- 227 (481)
T 2o5r_A 167 FFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSN-------------GLPTYNFACV-VDDMLME--ITHVIRGDD--- 227 (481)
T ss_dssp EECCCSSCEEEEETTTEEEEECTTSSCBEEEECTT-------------SCBCHHHHHH-HHHHHTT--CSEEEEEGG---
T ss_pred EEEcCCCceEEEecccceeEeccccCCCeEEEccC-------------CCcchhhHHH-HHHHhCC--CCeEEEChh---
Confidence 00 01122345688888863 8999999874 5556666 444468999
Q ss_pred cchHHHHHHH---HhccCCCCCcEEEeeeee-eeCCcccccccCCccCHHHHHH-hcCchHHHHHHhhc
Q 014658 133 PHHENEIAQS---CAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA 196 (421)
Q Consensus 133 pH~~~~~a~~---~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~ 196 (421)
|+.+.+.|. .+++.++| .|.|..++ ..+|+||||+.|++ ++.++.+ .|.|+++|.|+..-
T Consensus 228 -~~~~t~~q~~l~~aLG~~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 228 -HLSNTLRQLALYEAFEKAPP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp -GHHHHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred -HHHhHHHHHHHHHHcCCCCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 666666664 56654443 36899985 46899999999998 8999988 48899999888764
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=121.56 Aligned_cols=186 Identities=16% Similarity=0.168 Sum_probs=118.6
Q ss_pred CCCCCCCCCcc---------ccccccHHHHHHHHHHHHHcCCeeeeC--CcEEEecc----CCCC-ccccccccc-hhhh
Q 014658 2 ADLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVE--GDVFFAVE----KSPN-YGRLSGQRL-ENNR 64 (421)
Q Consensus 2 ~~Lnv~~p~~~---------~r~t~~i~~i~~~i~~L~~~g~aY~~~--~~vyf~v~----~~~~-Yg~ls~~~~-~~~~ 64 (421)
..||+. ++-. .+.|++.+...+++++|+++|+||.-. ..-..... .++. +..++.... ..+.
T Consensus 61 ~wlGl~-wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~ 139 (468)
T 1j09_A 61 KWLGLS-YDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERAR 139 (468)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHH
T ss_pred HHcCCC-CCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHh
Confidence 457887 5655 489999999999999999999999531 00000000 1111 222332111 1122
Q ss_pred CCCC------cc--------------ccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEE
Q 014658 65 AGER------VA--------------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 124 (421)
Q Consensus 65 ~g~~------v~--------------~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih 124 (421)
.|.+ ++ +.....+..||+|||.. |.|.||+.|+ .-.+..|-+-.|+
T Consensus 140 ~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~d-------------g~PtY~~a~v-vDD~~~githvir 205 (468)
T 1j09_A 140 RGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSD-------------GYPTYHLANV-VDDHLMGVTDVIR 205 (468)
T ss_dssp TTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTT-------------SCBCHHHHHH-HHHHHTTCCEEEE
T ss_pred cCCCceEEEecCCCCceEEEeccceeEeecccCCCCeEEEecC-------------CCeeehhHHH-HHHHHCCCCeEEE
Confidence 3321 11 11123456799999873 8999999875 4556667544444
Q ss_pred eecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCC
Q 014658 125 GGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYR 199 (421)
Q Consensus 125 ~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~ 199 (421)
|.| |+.+.+.|. .+++.++ + .|.|..+++ .+|.|||||.||+ ++.++.+. |.|+++|-|+..-.+.
T Consensus 206 --G~D----~~~~t~~q~~l~~alg~~~-p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 206 --AEE----WLVSTPIHVLLYRAFGWEA-P-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp --EGG----GGGGHHHHHHHHHHHTCCC-C-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred --Chh----hhhhHHHHHHHHHHcCCCC-C-eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccC
Confidence 799 666666665 5565444 3 457888864 7999999999998 88888874 9999999999874443
Q ss_pred C--C-cccCHHHHHH
Q 014658 200 S--P-LNYSVLQLDS 211 (421)
Q Consensus 200 ~--d-~~fs~e~l~~ 211 (421)
. + ..|+.+.+.+
T Consensus 277 ~~~~~~~~~~~el~~ 291 (468)
T 1j09_A 277 MPDGREIFTLEEFIQ 291 (468)
T ss_dssp CTTCCSCCCHHHHHH
T ss_pred CcccccCCCHHHHHh
Confidence 2 2 4578665543
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.8e-11 Score=121.31 Aligned_cols=174 Identities=20% Similarity=0.260 Sum_probs=115.7
Q ss_pred CCCCCCCCCccc---------cccccHHHHHHHHHHHHHcCCeeee-----------------------CC---cEEEec
Q 014658 2 ADLQCLPPTYQP---------RVSDHMEQIKDMITQIINNDCAYVV-----------------------EG---DVFFAV 46 (421)
Q Consensus 2 ~~Lnv~~p~~~~---------r~t~~i~~i~~~i~~L~~~g~aY~~-----------------------~~---~vyf~v 46 (421)
+.|||. +|--| +.|++.+...+++++|+++|+||.- +| .+.|.+
T Consensus 85 ~wlGl~-wDe~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~ 163 (488)
T 3afh_A 85 RWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 163 (488)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECC
T ss_pred HHcCCC-CCcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEEC
Confidence 458887 56654 8999999999999999999999961 11 122222
Q ss_pred cCCCCccccccccchhhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEee
Q 014658 47 EKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 126 (421)
Q Consensus 47 ~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~g 126 (421)
. -| ....+|+..|. + .....+..||+|||.. |.|.+|+.|. .-.+..|-+-.| =
T Consensus 164 ~----~~---~~~~~D~v~G~-~--~~~~~~~~D~Vl~R~D-------------G~PtY~lA~v-VDD~~mgIThVi--R 217 (488)
T 3afh_A 164 L----PG---KTSFEDLLKGY-M--EFDNSTLEDFIIMKSN-------------GFPTYNFAVV-VDDHLMRISHVF--R 217 (488)
T ss_dssp C----SS---EEEEEETTTEE-E--EEEGGGSCCEEEECTT-------------SCBCHHHHHH-HHHHHTTCSEEE--E
T ss_pred C----CC---ceeEEecccee-E--eecCCCCCCeEEEecC-------------CCeehhhHHH-HHHHhcCCCEEE--E
Confidence 1 00 01122222221 1 1122344699999973 8889998775 445566644444 3
Q ss_pred cccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhcCCC--
Q 014658 127 GIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR-- 199 (421)
Q Consensus 127 G~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~~~~-- 199 (421)
|.| |+.|.+.|. .|++.++ + .|.|..+++ .+|.||||+.|+ +++.++.+ .|.|+++|-|+..-.+.
T Consensus 218 G~D----~l~~tp~q~~l~~aLG~~~-P-~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~ 290 (488)
T 3afh_A 218 GED----HLSNTPKQLMIYEAFGWEA-P-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVE 290 (488)
T ss_dssp EGG----GGGGHHHHHHHHHHHTCCC-C-EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCS
T ss_pred chh----hhhCHHHHHHHHHHcCCCC-C-eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCc
Confidence 899 788887776 4554444 3 458988875 699999999999 68999887 49999999999874332
Q ss_pred CCcccCHHHH
Q 014658 200 SPLNYSVLQL 209 (421)
Q Consensus 200 ~d~~fs~e~l 209 (421)
.+--||.+.+
T Consensus 291 ~~e~~s~~e~ 300 (488)
T 3afh_A 291 GDEIFTIEEK 300 (488)
T ss_dssp SCSCCCHHHH
T ss_pred ccccCCHHHH
Confidence 2234555544
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-11 Score=125.09 Aligned_cols=163 Identities=20% Similarity=0.277 Sum_probs=112.1
Q ss_pred CCCCCCCCCccc---------cccccHHHHHHHHHHHHHcCCeeee-----------------------CC---cEEEec
Q 014658 2 ADLQCLPPTYQP---------RVSDHMEQIKDMITQIINNDCAYVV-----------------------EG---DVFFAV 46 (421)
Q Consensus 2 ~~Lnv~~p~~~~---------r~t~~i~~i~~~i~~L~~~g~aY~~-----------------------~~---~vyf~v 46 (421)
..|||. ++--| +.|++.+...+++++|+++|+||.- +| .+.|.+
T Consensus 189 ~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~ 267 (592)
T 3al0_C 189 RWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 267 (592)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECC
T ss_pred HHcCCC-CCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEEC
Confidence 457886 56654 8999999999999999999999971 12 233333
Q ss_pred cCCCCccccccccchhhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEee
Q 014658 47 EKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 126 (421)
Q Consensus 47 ~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~g 126 (421)
. -| ....+|+..|. + .....+..||+|||.. |.|.||+.|. ...+..|-+-.|+
T Consensus 268 ~----~~---~~~~~D~v~G~-~--~~~~~~~~D~Vl~R~d-------------g~ptY~~a~v-vDD~~~githvir-- 321 (592)
T 3al0_C 268 L----PG---KTSFEDLLKGY-M--EFDNSTLEDFIIMKSN-------------GFPTYNFAVV-VDDHLMRISHVFR-- 321 (592)
T ss_dssp C----SS---CCEECCTTTCS-E--ECCSSSSCCEEEECTT-------------SCCCHHHHHH-HHHHHTTCSBCCE--
T ss_pred C----CC---Cceeeecccce-e--eeccccCCCeEEEcCC-------------CCeehhhHHH-HHHHhcCCCeEEE--
Confidence 2 01 11223333332 1 1123445799999963 8999998875 4555666544443
Q ss_pred cccCcCcchHHHHHHHH---hccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhcCC
Q 014658 127 GIDLIFPHHENEIAQSC---AACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY 198 (421)
Q Consensus 127 G~Dli~pH~~~~~a~~~---a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~~~ 198 (421)
|.| |+.|.+.|.. |++.++ +.+ .|..+++ .+|.|||||.|+ +++.++.+ .|.|+++|.|+..-.+
T Consensus 322 G~D----~~~~t~~q~~l~~alg~~~-P~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 322 GED----HLSNTPKQLMIYEAFGWEA-PVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp EGG----GGGGHHHHHHHHTTTTCCC-CBC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred chh----hHhCHHHHHHHHHHhCCCC-CeE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 799 7777777764 443333 444 7888874 699999999999 68999987 5999999999987433
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=96.37 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=110.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC--------------CCccc----cccccchh
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNYGR----LSGQRLEN 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~--------------~~Yg~----ls~~~~~~ 62 (421)
|+.|||.++....+.|+|++.+.+++++|+++|+||.- ||+... +.|-. ++......
T Consensus 84 l~wlGl~~d~~~~~qS~r~~~y~~~~~~Li~~G~aY~C-----~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~ 158 (490)
T 4g6z_A 84 MAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYPC-----YMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPE 158 (490)
T ss_dssp HHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEEE-----CC-------------------CCCCTTCCCTTCCCCC
T ss_pred HHHcCCCCCCCCcccccCHHHHHHHHHHHHHCCCEEeC-----CCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhh
Confidence 35689986555679999999999999999999999942 221110 11211 11000000
Q ss_pred hhCCCC------------ccc--------cccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCce
Q 014658 63 NRAGER------------VAV--------DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122 (421)
Q Consensus 63 ~~~g~~------------v~~--------~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~D 122 (421)
...|.+ +.+ ...-..-.||+|.|. .|.|.+|..| +.-....|-+-.
T Consensus 159 ~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------------DG~ptY~lA~-vVDD~~mgIThV 224 (490)
T 4g6z_A 159 PPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARP-------------DGTPMYNFCV-VVDDLDMGITHV 224 (490)
T ss_dssp CCTTCCCEEEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECT-------------TSCBCHHHHH-HHHHHHTTCCEE
T ss_pred hhcCCCceEEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEee-------------CCCccchhHH-HHHHHhcCCCEE
Confidence 001110 000 000011235555554 3668889754 344445563333
Q ss_pred EEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhc-
Q 014658 123 IHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA- 196 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~- 196 (421)
+=|.| |..+.|-|. .|++.++| .+.|..+++ .+|.||||+.|. +++.++.+ .|.|++++-|++.-
T Consensus 225 --iRG~D----~l~~tprq~~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 225 --IRGDD----HVNNTPRQINILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp --EEEGG----GGGGHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred --Eeccc----cccChHHHHHHHHHcCCCCC--eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhC
Confidence 33899 777777775 45544443 358988876 589999999997 78888876 49999999999874
Q ss_pred -CCCCCcccCHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDS 211 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~ 211 (421)
+....--||.+.+.+
T Consensus 296 ~s~~~~e~~s~~eli~ 311 (490)
T 4g6z_A 296 WSHGDAEIFTREQFVE 311 (490)
T ss_dssp BCCTTCCCCCHHHHHH
T ss_pred CCCCCccccCHHHHHh
Confidence 333334578776654
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-06 Score=87.19 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=96.2
Q ss_pred cccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC-------------CCCccc----cccccc-hhhhCCCC--c--
Q 014658 12 QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGR----LSGQRL-ENNRAGER--V-- 69 (421)
Q Consensus 12 ~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~-------------~~~Yg~----ls~~~~-~~~~~g~~--v-- 69 (421)
.-+-|++.+...+++++|+++|.||. .|++.. .+.|-. |+.... +....|.+ +
T Consensus 84 ~~~QS~r~~~y~~~~~~L~~~g~aY~-----c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~ 158 (498)
T 2ja2_A 84 PYRQSQRAEIYRDVLARLLAAGEAYH-----AFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRL 158 (498)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEE
T ss_pred CeeeecCHHHHHHHHHHHHHcCCeEE-----eCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEE
Confidence 56789999999999999999999995 222111 112221 111000 01122321 0
Q ss_pred ccc---------------ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcc
Q 014658 70 AVD---------------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH 134 (421)
Q Consensus 70 ~~~---------------~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH 134 (421)
..+ ..-..-.||+|.|+ .|.|-+|..| +.-....| ++.-+=|.| |
T Consensus 159 k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~ptY~lA~-vVDD~~mg--ithviRG~D----~ 218 (498)
T 2ja2_A 159 RMPDDDLAWNDLVRGPVTFAAGSVPDFALTRA-------------SGDPLYTLVN-PCDDALMK--ITHVLRGED----L 218 (498)
T ss_dssp CCCSSCEEEEETTTEEEEECTTCSCCCBSBCT-------------TSCBCHHHHH-HHHHHHTT--CCEEEEEGG----G
T ss_pred ECCCCceEEEecccceEeecccccCcceeEcc-------------CCCcchhhHH-HHHhhhcC--CCEEEEChh----h
Confidence 000 00012246676665 3778888755 34444555 444456899 5
Q ss_pred hHHHHHH---HHhc-----cCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh-cCchHHHHHHhhc
Q 014658 135 HENEIAQ---SCAA-----CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA 196 (421)
Q Consensus 135 ~~~~~a~---~~a~-----~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~ 196 (421)
+.+.+.| ..++ +.++ + .+.|..+++ .+|.||||+.|+ +++.++.+. |.|+++|.|+..-
T Consensus 219 ~~~t~~q~~l~~aL~~~g~g~~~-P-~~~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 219 LPSTPRQLALHQALIRIGVAERI-P-KFAHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp GGGHHHHHHHHHHHHHTTSCCCC-C-EEEEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred hhccHHHHHHHHHHHhhcCCCCC-C-eEEEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 5555533 3555 4444 4 447888875 689999999999 588888874 9999999999874
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.8e-06 Score=79.72 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=57.4
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLAL 189 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~l 189 (421)
.|+.+.+-..+|+..+|.|+.+ |++.-.-....++.++ + +.+|+.++. .+|+|||||.||.|.+.| ++|++
T Consensus 161 lqaaD~l~~~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~-p-~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i 232 (323)
T 2cyb_A 161 MQALDIAHLGVDLAVGGIDQRK-IHMLARENLPRLGYSS-P-VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEV 232 (323)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHH
T ss_pred HHHHHHHhcCCCEEEechhhHH-HHHHHHHHHHhcCCCC-c-eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHH
Confidence 4555555557999999999865 6555444444443333 2 347778885 799999999999999987 59999
Q ss_pred HHHHhhc
Q 014658 190 RHFLISA 196 (421)
Q Consensus 190 R~~ll~~ 196 (421)
|..++++
T Consensus 233 ~~Ki~~a 239 (323)
T 2cyb_A 233 ERKIRKA 239 (323)
T ss_dssp HHHHHTS
T ss_pred HHHHHhc
Confidence 9999875
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00067 Score=70.03 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
.|.|.+|..| +.-....| ++.-+=|.| |..+.+.|. .|++.++| .|.|+.+++ .+|.|+||+.|. .
T Consensus 212 dg~PtY~fA~-vVDD~~mg--ITHViRG~D----~l~sTp~q~~l~~alg~~~P--~y~H~pli~~~~g~kLSKR~~~-~ 281 (512)
T 4gri_A 212 DGLPTYHLAN-VVDDYLMK--ITHVLRAQE----WVSSGPLHVLLYKAFKWKPP--IYCHLPMVMGNDGQKLSKRHGS-T 281 (512)
T ss_dssp TSCBCHHHHH-HHHHHHTT--CSEEEEEGG----GGGGHHHHHHHHHHHTCCCC--EEEEECCCBCTTSSBCCTTTSC-C
T ss_pred CCcccccccc-eecccccC--Cceeccccc----cccccHHHHHHHHHcCCCCC--eEEecchhccccccccCccccc-c
Confidence 4678899755 45455666 444444799 555555543 45555444 458999887 589999999987 5
Q ss_pred CHHHHHH-hcCchHHHHHHhh-c-CCCC-CcccCHHHHHHH
Q 014658 176 TIRQITE-RYHPLALRHFLIS-A-HYRS-PLNYSVLQLDSA 212 (421)
Q Consensus 176 ~~~dll~-~yg~D~lR~~ll~-~-~~~~-d~~fs~e~l~~~ 212 (421)
++.++.+ .|-|+++.=|++. + ++.. .--||.+.|.+.
T Consensus 282 ~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~ 322 (512)
T 4gri_A 282 ALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQF 322 (512)
T ss_dssp BHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHH
T ss_pred cHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHH
Confidence 6777765 5999999988876 3 4443 346888877664
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00014 Score=70.70 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCc
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHP 186 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~ 186 (421)
|+.+++-. ..||.+||.|... |.+.-.=...-++..++ +-+++..|. .+|.|||||.||.|.+.| ++.++
T Consensus 179 QaaDil~l~~~~~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp 253 (322)
T 2yxn_A 179 QGYDFACLNKQYGVVLCIGGSDQWG-NITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSP 253 (322)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCH
T ss_pred HHHHHHHHhccCCceEEecCchhHH-HHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCH
Confidence 44444434 7899999999765 66655444444444332 334556665 599999999999999888 67788
Q ss_pred hHHHHHHhhc
Q 014658 187 LALRHFLISA 196 (421)
Q Consensus 187 D~lR~~ll~~ 196 (421)
+.++=++.+.
T Consensus 254 ~~~~~ki~~~ 263 (322)
T 2yxn_A 254 YKFYQFWINT 263 (322)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCC
Confidence 8888777653
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00028 Score=71.23 Aligned_cols=77 Identities=21% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc-ccccccCCccCHHHHHHhcCchHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLAL 189 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKSlGN~i~~~dll~~yg~D~l 189 (421)
|+.+++-...|+..||.|.. +|.+.-.=....++..+ + +.+++.+|. .+|. |||||.||.|.+.| +|+.+
T Consensus 179 QaaDil~l~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~-~-~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i 250 (432)
T 1h3f_A 179 QAYDSVAIRADVEMGGTDQR-FNLLVGREVQRAYGQSP-Q-VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAM 250 (432)
T ss_dssp HHHHHHHHTCSEEEEEGGGH-HHHHHHHHHHHHTTCCC-C-EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHH
T ss_pred HhhhhhhcCccEEEechHHH-HHHHHHHHHHHHhCCCC-c-eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHH
Confidence 44444333589999999987 57765555555554433 2 446667775 6896 99999999999887 88888
Q ss_pred HHHHhhc
Q 014658 190 RHFLISA 196 (421)
Q Consensus 190 R~~ll~~ 196 (421)
+=++++.
T Consensus 251 ~~Ki~~~ 257 (432)
T 1h3f_A 251 FKKLMRV 257 (432)
T ss_dssp HHHHHTS
T ss_pred HHHHhCC
Confidence 8777764
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00022 Score=70.17 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=44.9
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCc
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHP 186 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~ 186 (421)
|+.+++-. ..|+..||.|... |.+.-.=...-++..++ +.+++.+|. .+|.|||||.||.|.+.| ++-+|
T Consensus 198 QAaDil~l~~~~~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp 272 (356)
T 2pid_A 198 QAYDFYYLFQRYGCRVQLGGSDQLG-NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSP 272 (356)
T ss_dssp HHHHHHHHHHHHCCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCH
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCH
Confidence 44554434 7899999999754 66655554444544332 335666765 699999999999999887 56788
Q ss_pred hHHHHHHhhc
Q 014658 187 LALRHFLISA 196 (421)
Q Consensus 187 D~lR~~ll~~ 196 (421)
+.++=++++.
T Consensus 273 ~~i~~ki~~~ 282 (356)
T 2pid_A 273 FELYQFFVRQ 282 (356)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcC
Confidence 8888887763
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00034 Score=70.34 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=54.7
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhc-cCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcC
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYH 185 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~-~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg 185 (421)
|+++++-. ..|+..||.|..+ |.+.-.=...-+ +..++ +-+++.+|+ .+|.|||||.||.|.+.| ++.+
T Consensus 174 QaaD~l~l~~~~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ts 248 (420)
T 1jil_A 174 QAIDFGHLNRELNCKIQVGGSDQWG-NITSGIELMRRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTS 248 (420)
T ss_dssp HHHHHHHHHHHHCEEEEEEEGGGHH-HHHHHHHHHHHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSC
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCC
Confidence 45554434 7899999999765 665554444444 44332 345667775 699999999999998877 5667
Q ss_pred chHHHHHHhh
Q 014658 186 PLALRHFLIS 195 (421)
Q Consensus 186 ~D~lR~~ll~ 195 (421)
|+.++=++++
T Consensus 249 p~~i~~ki~~ 258 (420)
T 1jil_A 249 PYEFYQFWIN 258 (420)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 7777767665
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=70.66 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhc-cCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcC
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYH 185 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~-~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg 185 (421)
|+++++-. ..|+..||.|..+ |.+.-+=...-+ +..++ +-+++.+++ .+|.|||||.||.|.+.| ++.+
T Consensus 173 QaaDil~l~~~~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~ts 247 (419)
T 2ts1_A 173 QAYDFLRLYETEGCRLQIGGSDQWG-NITAGLELIRKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTS 247 (419)
T ss_dssp HHHHHHHHHHHHCEEEEEEEGGGHH-HHHHHHHHHHHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSC
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCC
Confidence 45554434 7899999999765 655544444444 33332 345667765 699999999999998877 5667
Q ss_pred chHHHHHHhh
Q 014658 186 PLALRHFLIS 195 (421)
Q Consensus 186 ~D~lR~~ll~ 195 (421)
|+.++=++++
T Consensus 248 p~~i~qki~~ 257 (419)
T 2ts1_A 248 PYEFYQFWIN 257 (419)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 7777777765
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00039 Score=68.04 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=54.2
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cC---CCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 183 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~---~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~ 183 (421)
-|+.+++=+..|+..+|.|... |.+.-+-....+ ++ ..|.-+..|+..|. .+|.|||||.||.|.+.|
T Consensus 144 LQAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d---- 218 (340)
T 2g36_A 144 LQAADILIYKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI---- 218 (340)
T ss_dssp HHHHHHHTTTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC----
T ss_pred HHHhhHHHhCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC----
Confidence 4666666667899999999765 665444333332 23 12232334445555 689999999999999887
Q ss_pred cCchHHHHHHhhc
Q 014658 184 YHPLALRHFLISA 196 (421)
Q Consensus 184 yg~D~lR~~ll~~ 196 (421)
+++.++=.+.++
T Consensus 219 -sp~~i~~Ki~~a 230 (340)
T 2g36_A 219 -SEKELEQTILRM 230 (340)
T ss_dssp -CHHHHHHHHHTC
T ss_pred -CHHHHHHHHHhC
Confidence 788888777764
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00042 Score=69.81 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=54.8
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCC-ccCHHHHHHhcC
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYH 185 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~dll~~yg 185 (421)
|+.+++-. ..|+..||.|..+ |.+.-+=...-++..++ +-+++-+|. .+|.|||||.|| .|.+.| ++.+
T Consensus 175 QaaDil~l~~~~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~ts 249 (432)
T 2jan_A 175 QANDYVELHRRHGCTLQIGGADQWG-NIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTS 249 (432)
T ss_dssp HHHHHHHHHHHHCCCEEEECSTTHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSC
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCC
Confidence 44454433 7899999999765 65544444444444332 445666665 699999999999 898876 5678
Q ss_pred chHHHHHHhhc
Q 014658 186 PLALRHFLISA 196 (421)
Q Consensus 186 ~D~lR~~ll~~ 196 (421)
|+.++=++++.
T Consensus 250 p~~i~qki~~~ 260 (432)
T 2jan_A 250 PYAWYQYFVNT 260 (432)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 88887777663
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=68.06 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=49.0
Q ss_pred CceEEeecccCcCcchHHHHHHHHhc---c---C-----CC----CCcEEEeeeeee-eCCcccccccCCccCHHHHHHh
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAA---C---Q-----DS----NVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 183 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~---~---~-----~~----~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~ 183 (421)
..|+..||.|. .+|.+.-+=+..-. + + .| .+.+.+++.+|+ .+|.|||||.||.|.+.| +.
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 58999999998 55655443332211 1 0 01 123556767776 699999999999998876 45
Q ss_pred cCchHHHHHHhhc
Q 014658 184 YHPLALRHFLISA 196 (421)
Q Consensus 184 yg~D~lR~~ll~~ 196 (421)
-+|+.++=++++.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 6777777666653
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0006 Score=67.57 Aligned_cols=76 Identities=18% Similarity=0.000 Sum_probs=44.0
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCC-ccCHHHHHHhcCchHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLAL 189 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~dll~~yg~D~l 189 (421)
|+.+++-+..|+..+|.|... |.+.-+-....++..+ + +.+|+.+|. .+|.|||||.|| .|.+.| +++.+
T Consensus 170 QaaDil~~~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i 241 (372)
T 1n3l_A 170 QALDEEYLKVDAQFGGIDQRK-IFTFAEKYLPALGYSK-R-VHLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDV 241 (372)
T ss_dssp HHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCSSCC-------CCSCBTTC-----CHHHH
T ss_pred hhccHHHhcCCEEEcChhHHH-HHHHHHHHHHHcCCCC-C-EEEecCccCCCCcccccCCCCCCeEeccC-----CHHHH
Confidence 555555456899999999654 5554444444443322 2 346777775 799999999999 688765 26777
Q ss_pred HHHHhh
Q 014658 190 RHFLIS 195 (421)
Q Consensus 190 R~~ll~ 195 (421)
+=.+.+
T Consensus 242 ~kKi~~ 247 (372)
T 1n3l_A 242 KKKLKK 247 (372)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777665
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00073 Score=67.49 Aligned_cols=77 Identities=17% Similarity=0.015 Sum_probs=41.7
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eC-CcccccccCCc-cCHHHHHHhcCch
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-NEKMSKSLGNF-FTIRQITERYHPL 187 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-G~KMSKSlGN~-i~~~dll~~yg~D 187 (421)
.|+.+++-..+|+..+|.|+.. |.+.-+-....++..+ + +.+|+.+|. .+ |.|||||.||. |.+.| +++
T Consensus 173 lQaaD~l~~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~ 244 (394)
T 2dlc_X 173 MQALDEQFLDVDCQFGGVDQRK-IFVLAEENLPSLGYKK-R-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPK 244 (394)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCCC----------CCSCBTTC-----CHH
T ss_pred HhhccHhhhCCCEEecCccHHH-HHHHHHHHHHHcCCCC-C-EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHH
Confidence 3555555567899999999644 5544444444444332 2 446777775 68 99999999996 87765 356
Q ss_pred HHHHHHhh
Q 014658 188 ALRHFLIS 195 (421)
Q Consensus 188 ~lR~~ll~ 195 (421)
.+|=-+.+
T Consensus 245 ~i~kKI~k 252 (394)
T 2dlc_X 245 QVKKKINS 252 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00066 Score=65.90 Aligned_cols=79 Identities=27% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHH--HHHHHhc-cCC--CCCcEEE--eeeeee-eCCcccccccCCccCHHHHHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENE--IAQSCAA-CQD--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIRQITE 182 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~--~a~~~a~-~~~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~dll~ 182 (421)
-|+.+++-+..|+..+|.|... |++.- +|...-. +++ +.+...+ ++.+|. .+|.|||||.||.|.+.|
T Consensus 130 LQAaDil~~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d--- 205 (322)
T 3tzl_A 130 LMAADILLFDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS--- 205 (322)
T ss_dssp HHHHHHHHTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC---
T ss_pred HHHHHHHHhCCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC---
Confidence 3566665567899999999765 65543 3332211 122 1122312 234554 699999999999998765
Q ss_pred hcCchHHHHHHhh
Q 014658 183 RYHPLALRHFLIS 195 (421)
Q Consensus 183 ~yg~D~lR~~ll~ 195 (421)
+++.++=.+.+
T Consensus 206 --~p~~i~~KI~~ 216 (322)
T 3tzl_A 206 --SEKTLKKQISS 216 (322)
T ss_dssp --CHHHHHHHHHT
T ss_pred --CHHHHHHHHHh
Confidence 56777766665
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=63.08 Aligned_cols=77 Identities=17% Similarity=0.087 Sum_probs=51.4
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eC-----------------Ccccccc-c
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-----------------NEKMSKS-L 171 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-----------------G~KMSKS-l 171 (421)
-|+.+++-+..|+..||.|... |++.-.-....++.+++ +.+|+.+|. .+ |.||||| .
T Consensus 168 LQaaDil~~~~~~v~~G~DQ~~-~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 168 MQVSDIFYMDLDIALGGMDQRK-AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred HHHhhHHhcCCCEEeccchHHH-HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 4556655567899999999765 66555554444443322 346767775 56 7999999 7
Q ss_pred CCccCHHHHHHhcCchHHHHHHhh
Q 014658 172 GNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 172 GN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
||.|.+.| +++.++=.+.+
T Consensus 245 ~~~I~L~d-----~p~~i~~Ki~~ 263 (364)
T 2cya_A 245 ETAVFVVD-----SDDDIRRKIRK 263 (364)
T ss_dssp GGSCBTTC-----CHHHHHHHHHT
T ss_pred CCEeeccC-----CHHHHHHHHHh
Confidence 89898766 36677666665
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0036 Score=60.50 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=45.6
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC-cccccccCCccCHHHHHHhcCchH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 188 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G-~KMSKSlGN~i~~~dll~~yg~D~ 188 (421)
-|+.+++-...|+..||.|... |.+ .+.-.+ . + .-+.+|+..|. .+| .|||||.||.|.+.| +++.
T Consensus 154 LQaaDil~~~~~~v~~G~DQ~~-~~~--l~R~i~--~-~-~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d-----~~~~ 221 (314)
T 2zp1_A 154 MQVNTSHYLGVDVAVGGMEQRK-IHM--LARELL--P-K-KVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD-----SPEE 221 (314)
T ss_dssp HHHHHHHHHTCSEEEEEGGGHH-HHH--HHHHHS--S-S-CCEEEEECCCBCTTSSSBCCTTTTCSCBTTC-----CHHH
T ss_pred HHHHhHHhhCCCEEEcChhHHH-HHH--HHHHhc--C-C-CcEEeeccccccCCcccccCCCCcceecCCC-----CHHH
Confidence 3555555446899999999766 432 222222 2 2 22447767776 689 799999999998765 3444
Q ss_pred HHHHHhh
Q 014658 189 LRHFLIS 195 (421)
Q Consensus 189 lR~~ll~ 195 (421)
+|==+.+
T Consensus 222 i~~KI~~ 228 (314)
T 2zp1_A 222 IRAKIKK 228 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5444444
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=62.19 Aligned_cols=78 Identities=17% Similarity=0.040 Sum_probs=48.9
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-ccccccc-CCccCHHHHHHhcCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSL-GNFFTIRQITERYHP 186 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSl-GN~i~~~dll~~yg~ 186 (421)
-|+.+++-...|+..||.|..+ |++.-.-...-++.. +.-+.+|+.+|. + +| .|||||. ||.|.+.| ++
T Consensus 191 LQaaDil~l~ad~vpgG~DQ~~-~l~l~Rdla~r~~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p 263 (373)
T 3vgj_A 191 MQCADIFFLNVDICQLGIDQRK-VNMLAREYCDIKKIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SE 263 (373)
T ss_dssp HHHHHHHHTTCSEECCBGGGHH-HHHHHHHHHHHHTCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CH
T ss_pred HHHhcccccCCcEEEcchhhHH-HHHHHHHHHHHhCCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CH
Confidence 4566655556899999999765 665544444444332 233556777776 4 88 4999999 57887643 34
Q ss_pred hHHHHHHhh
Q 014658 187 LALRHFLIS 195 (421)
Q Consensus 187 D~lR~~ll~ 195 (421)
+.++==+.+
T Consensus 264 ~~i~~KI~k 272 (373)
T 3vgj_A 264 SDVNRKIKK 272 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455544444
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0018 Score=63.57 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=48.3
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cCC--CCCcEEE-eeeeee-eCCc-ccccccCCccCHHHHHHh
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQD--SNVSYWM-HNGHVT-NNNE-KMSKSLGNFFTIRQITER 183 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~~--~~~~~~~-h~g~l~-~~G~-KMSKSlGN~i~~~dll~~ 183 (421)
|+.+++-+..|+..+|.|... |.+.-+-....+ ++. +-+...+ |+..|. .+|. |||||.||.|.+.|
T Consensus 154 QAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d---- 228 (351)
T 1yi8_B 154 QAADIAAFGATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD---- 228 (351)
T ss_dssp HHHHHHHHTCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC----
T ss_pred HHhhHHhcCCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC----
Confidence 444544456899999999765 655443333322 231 2223323 345554 5897 99999999888765
Q ss_pred cCchHHHHHHhh
Q 014658 184 YHPLALRHFLIS 195 (421)
Q Consensus 184 yg~D~lR~~ll~ 195 (421)
+++.++=.+.+
T Consensus 229 -~p~~i~~Ki~~ 239 (351)
T 1yi8_B 229 -SADEVARKVMG 239 (351)
T ss_dssp -CHHHHHHHHHT
T ss_pred -CHHHHHHHHHh
Confidence 26667666665
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0031 Score=61.58 Aligned_cols=78 Identities=23% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cCC--CCCcEEEee---eeee-eCC-cccccccCCccCHHHHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQD--SNVSYWMHN---GHVT-NNN-EKMSKSLGNFFTIRQIT 181 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~~--~~~~~~~h~---g~l~-~~G-~KMSKSlGN~i~~~dll 181 (421)
|+.+++-+..|+..+|.|... |.+.-+-...-+ ++. +.+.. +|+ ..|. .+| .|||||.||.|.+.|
T Consensus 133 QaaDil~~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-- 208 (337)
T 2el7_A 133 QAADILIYKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQA-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-- 208 (337)
T ss_dssp HHHHHHHTTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEE-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSS--
T ss_pred HHhhHHhhCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCee-ecccccccccCCCCccccCCCCCCeeeCcC--
Confidence 455554457899999999765 665443333222 131 22233 343 3444 689 999999999998776
Q ss_pred HhcCchHHHHHHhhc
Q 014658 182 ERYHPLALRHFLISA 196 (421)
Q Consensus 182 ~~yg~D~lR~~ll~~ 196 (421)
+++.++=++.+.
T Consensus 209 ---~p~~i~~Ki~~a 220 (337)
T 2el7_A 209 ---PEESIWQKIQHL 220 (337)
T ss_dssp ---CHHHHHHHHHTC
T ss_pred ---CHHHHHHHHHhC
Confidence 377777777664
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0034 Score=62.45 Aligned_cols=56 Identities=16% Similarity=-0.009 Sum_probs=28.3
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCCccCHHH
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGNFFTIRQ 179 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN~i~~~d 179 (421)
.|+..||.|..+ |.+.-.-...-++.+++ +.+|+-+|. ++| .|||||.||.|.+.|
T Consensus 225 ~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDP-YFRLTRDIAPRLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHH-HHHHHHHTHHHHTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHH-HHHHHHHHHHHcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 789999999764 66554444444444332 336767776 688 799999999997654
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0097 Score=59.00 Aligned_cols=72 Identities=10% Similarity=-0.056 Sum_probs=46.6
Q ss_pred hcCCC-ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc-ccccc-cCCccCHHHHHHhcCchHHHH
Q 014658 116 YLSSK-FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKS-LGNFFTIRQITERYHPLALRH 191 (421)
Q Consensus 116 ~lg~~-~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKS-lGN~i~~~dll~~yg~D~lR~ 191 (421)
++++. .++-.+|.|..+ |.+.-.-...-++.+++ +.+++.+|. ++|. ||||| .||.|.+.| +++.++=
T Consensus 219 il~~~~a~~VpvG~DQ~~-hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~k 290 (386)
T 3hzr_A 219 FFSSPARCLVLDSIKNVQ-FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVER 290 (386)
T ss_dssp TCSSCCEEEEEEEGGGHH-HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHH
T ss_pred hhCCCCccccccccchHH-HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHH
Confidence 44654 555556999665 77665555555554433 446767776 6885 99999 899998765 5555554
Q ss_pred HHhh
Q 014658 192 FLIS 195 (421)
Q Consensus 192 ~ll~ 195 (421)
-+.+
T Consensus 291 KI~k 294 (386)
T 3hzr_A 291 KINK 294 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0048 Score=60.01 Aligned_cols=68 Identities=24% Similarity=0.076 Sum_probs=41.9
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEE--eeeeee-eCC--cccccccCC-c--cCH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWM--HNGHVT-NNN--EKMSKSLGN-F--FTI 177 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~--h~g~l~-~~G--~KMSKSlGN-~--i~~ 177 (421)
-|+.+++-+..|+..+|.|... |.+.-.-....++ +. +.+..++ |+..|. .+| .|||||.|| . |.+
T Consensus 128 LQaaDil~~~~~~vpvG~DQ~~-~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L 206 (328)
T 1i6k_A 128 LMAADILLYNTDIVPVGEDQKQ-HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITL 206 (328)
T ss_dssp HHHHHHHTTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred HHHHHHHHhCCCEEecccchHH-HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeee
Confidence 4666666677999999999766 6654433333322 21 2233333 234444 678 899999999 5 765
Q ss_pred HH
Q 014658 178 RQ 179 (421)
Q Consensus 178 ~d 179 (421)
.|
T Consensus 207 ~d 208 (328)
T 1i6k_A 207 LD 208 (328)
T ss_dssp TC
T ss_pred cC
Confidence 43
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0053 Score=60.75 Aligned_cols=79 Identities=20% Similarity=0.100 Sum_probs=52.8
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-------CCCcEEEeeeeee-eCC------------------
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-------SNVSYWMHNGHVT-NNN------------------ 164 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-------~~~~~~~h~g~l~-~~G------------------ 164 (421)
-|+.+++-+..|+..||.|.. +|++.-.-...-++.. .+.-+.+|+..|. .+|
T Consensus 171 LQaaDil~~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~ 249 (375)
T 2cyc_A 171 MQVADIFYQGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQ 249 (375)
T ss_dssp HHHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhh
Confidence 466666556789999999977 5776555444444330 1133457767776 677
Q ss_pred ccccccc-CCccCHHHHHHhcCchHHHHHHhh
Q 014658 165 EKMSKSL-GNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 165 ~KMSKSl-GN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
.|||||. +|.|.+.| +++.+|=.+.+
T Consensus 250 ~KMSKS~~~~~I~L~d-----~p~~i~~KI~~ 276 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIHD-----SPEEIRQKLRK 276 (375)
T ss_dssp HBGGGSCGGGSCBTTC-----CHHHHHHHHHH
T ss_pred hcccCCCCCCeeccCC-----CHHHHHHHHHH
Confidence 8999999 78888765 36777767665
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0098 Score=59.34 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=40.3
Q ss_pred hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--ccccccc-CCccCHHH
Q 014658 116 YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSL-GNFFTIRQ 179 (421)
Q Consensus 116 ~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSl-GN~i~~~d 179 (421)
++++..++..||.|..+ |.+.-.=...-++.+++ .+ +|+.+|. ++| .|||||. ||.|.+.|
T Consensus 239 il~~~a~lvpvG~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 239 IGKGAMCLVPAAVDQDP-FFRLARDKAKALGEKKP-SS-IYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp SCTTCEEEEEEEGGGHH-HHHHHHHHHHHHTCCCC-EE-EEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred hccCCCeEEeeccchHH-HHHHHHHHHHHcCCCCc-ee-eccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 45666788999999765 66554444444443332 23 5667776 688 6999999 78887654
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0082 Score=58.80 Aligned_cols=66 Identities=18% Similarity=0.025 Sum_probs=41.8
Q ss_pred HHHHhhcCC---CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-ccccccc-CCccCHHH
Q 014658 111 AMSAHYLSS---KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSL-GNFFTIRQ 179 (421)
Q Consensus 111 am~~~~lg~---~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSl-GN~i~~~d 179 (421)
-|+.+++-. ..|+..||.|... |++.-.=....++.. ++ +.+|+.+|. + +| .|||||. ||.|.+.|
T Consensus 174 lQaaDil~~~~~~~~~~~~G~DQ~~-~i~l~Rdia~r~~~~-~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 174 MQAADVFELVPEGIDICQLGIDQRK-VNMLAIEYANDRGLK-IP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp HHHHHHHHSSTTCCSEECCBGGGHH-HHHHHHHHHHHTTCC-CC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred HHHHHHHHHhcCCCcEEEeccChHH-HHHHHHHHHHHhCCC-Cc-eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 345554433 6899999999764 665444444444333 23 346767775 5 67 7999999 68886543
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.008 Score=58.88 Aligned_cols=67 Identities=21% Similarity=0.109 Sum_probs=43.6
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEe---eeeee-eCC--cccccccCC---ccC
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMH---NGHVT-NNN--EKMSKSLGN---FFT 176 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h---~g~l~-~~G--~KMSKSlGN---~i~ 176 (421)
-|+.+++-+..|+..+|.|... |.+.-.-....++ ++ +.+.. +| +..|. ++| .|||||.|| .|.
T Consensus 138 LQaaDil~~~a~~vpvG~DQ~~-~lel~Rdia~r~n~~yg~~f~~P~~-l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~ 215 (348)
T 2yy5_A 138 LMAGDILLYQPDIVPVGNDQKQ-HLELTRDLAQRIQKKFKLKLRLPQF-VQNKDTNRIMDLFDPTKKMSKSSKNQNGVIY 215 (348)
T ss_dssp HHHHHHHTTCCSEEECCGGGHH-HHHHHHHHHHHHHHHHCCCCCCCEE-ECCTTTTTCBCSSCTTSBCCSSCSCGGGCCB
T ss_pred HHHHHHHHhCccEEEecccHHH-HHHHHHHHHHHhhhhcccccCCCee-ecccccccccCCCCcchhcCCCCCCCCceEe
Confidence 4667777678999999999776 6655444433332 32 22334 34 24444 577 899999999 787
Q ss_pred HHH
Q 014658 177 IRQ 179 (421)
Q Consensus 177 ~~d 179 (421)
+.|
T Consensus 216 L~D 218 (348)
T 2yy5_A 216 LDD 218 (348)
T ss_dssp TTC
T ss_pred ecC
Confidence 654
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.012 Score=58.35 Aligned_cols=64 Identities=17% Similarity=0.019 Sum_probs=41.2
Q ss_pred HHHhhcCC-CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHH
Q 014658 112 MSAHYLSS-KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIR 178 (421)
Q Consensus 112 m~~~~lg~-~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~ 178 (421)
|+.+.+-. ..|+-.+|.|.. ||.+.-.-...-++.+.+ .. +++.+|. ++| .|||||.+| .|.+.
T Consensus 198 QaaDil~~~~a~~vpvG~DQ~-~hl~l~Rdla~r~n~~~p-~~-l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 198 QIAPTFFERKRCLIPAAIDQD-PYWRLQRDFAESLGYYKT-AA-LHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp HHGGGGSSSSCEEEEEEGGGH-HHHHHHHHHTGGGTSCCC-EE-EEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred HHhhHHhhcCCceeecccchH-HHHHHHHHHHHHcCCCCC-ee-eecccccCCCCCccccccCCCCCeeeCC
Confidence 55565544 367779999976 466655444444443332 23 4557775 687 599999999 77654
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.014 Score=58.78 Aligned_cols=58 Identities=12% Similarity=-0.077 Sum_probs=32.9
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
+..++..||.|..+ |.+.-.-....++...+ .. +|+.+|. .+| .|||||.|| .|.+.|
T Consensus 248 ~~~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDP-YFRVCRDVADKLKYSKP-AL-LHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHH-HHHHHHHHHHHHTSCCC-EE-EEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHH-HHHHHHHHHHHhCCCCc-ee-eccccccCCCCCccccCCCCCCCeEeccC
Confidence 45677889999765 55544444444443322 24 6667776 688 899999999 787655
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=61.67 Aligned_cols=66 Identities=15% Similarity=-0.037 Sum_probs=42.9
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-cccccccC-CccCH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSLG-NFFTI 177 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSlG-N~i~~ 177 (421)
.-|+.+++-...|+..||.|..+ |++.-.-...-++.. +.-+.+++.+|. . +| .|||||.+ |.|.+
T Consensus 173 lLQAaDil~~~ad~vpvG~DQ~~-~l~l~Rdla~r~n~~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L 242 (690)
T 3p0j_A 173 LMQCCDIFFLKADICQLGLDQRK-VNMLAREYCDLIGRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 242 (690)
T ss_dssp HHHHHHHHHTTCSEECCBGGGHH-HHHHHHHHHHHTTCC-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBT
T ss_pred HHHHHHHHhhCCCEEeccccHHH-HHHHHHHHHHHhCCC-CCceEeecCeeecCCCCCcCCCCCCCCCeeec
Confidence 45666665556899999999765 655444443344333 222446777776 5 78 59999998 66653
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.016 Score=57.61 Aligned_cols=55 Identities=15% Similarity=-0.070 Sum_probs=25.5
Q ss_pred eEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 122 DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 122 Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
++..||.|..+ |.+.-.-...-++.+++ +.+|+.+|. .+| .|||||.+| .|.+.|
T Consensus 222 ~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDP-YFRMVRDVAPRLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHH-HHHHHHHHTGGGTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHH-HHHHHHHHHHHcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 45589999654 66544444444443332 336767776 688 799999998 676543
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.042 Score=55.29 Aligned_cols=57 Identities=14% Similarity=-0.066 Sum_probs=35.6
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
..++..+|.|..+ |.+.-.-....++... +.+ +++-+|. .+| .|||||.|| .|.+.|
T Consensus 256 ~~~lVpvG~DQ~~-~i~l~Rdla~r~~~~~-P~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 256 IQCLIPCAIDQDP-YFRMTRDVAPRIGYPK-PAL-LHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHGGGGTCCC-CEE-EEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CceEEEeehhhHH-HHHHHHHHHHHhCCCC-ceE-eecccccCCCCCccccCCCCCCCeeeccC
Confidence 3345557999655 5544444433343222 223 5667776 688 899999999 787654
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.022 Score=56.47 Aligned_cols=69 Identities=22% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CCCC--CcEEEee--eeee-e-CC-ccccccc---CCccC
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QDSN--VSYWMHN--GHVT-N-NN-EKMSKSL---GNFFT 176 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~~~--~~~~~h~--g~l~-~-~G-~KMSKSl---GN~i~ 176 (421)
.-|+.+.+=+..|+..+|.|..+ |++.-.=...-++ ++.+ +..+++. ..+. + +| .|||||. ||.|.
T Consensus 161 vLQAADIl~~~ad~vPvG~DQ~~-hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~ 239 (388)
T 3prh_A 161 PLMAADILLYGTDLVPPGEDQKQ-HLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239 (388)
T ss_dssp HHHHHHHHTTTCCEECCCSSCHH-HHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCB
T ss_pred HHHHHHHHHhCCCEEEechhHHH-HHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeee
Confidence 34677766667899999999775 6655433332222 2222 1111221 1222 3 44 7999999 89997
Q ss_pred HHH
Q 014658 177 IRQ 179 (421)
Q Consensus 177 ~~d 179 (421)
+.|
T Consensus 240 L~D 242 (388)
T 3prh_A 240 LLD 242 (388)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.054 Score=55.18 Aligned_cols=56 Identities=14% Similarity=-0.050 Sum_probs=35.7
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
.++..+|.|..+ |.+.-.-....++...+ .. +|+-+|+ .+| .|||||.|| .|.+.|
T Consensus 304 ~~~VpvG~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 304 QCLIPCAIDQDP-YFRMTRDVAPRIGYPKP-AL-LHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEEEEEEGGGHH-HHHHHHHHGGGGTCCCC-EE-EEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred ceeEeccccHHH-HHHHHHHHHHHhCCCCc-ee-eecccccCCCCCccccCCCCCCCceeecC
Confidence 344457999765 65544444444443322 24 6667776 688 899999999 787654
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.048 Score=54.96 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=33.0
Q ss_pred EEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc--ccccccCC-ccCH
Q 014658 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE--KMSKSLGN-FFTI 177 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~--KMSKSlGN-~i~~ 177 (421)
+-.+|.|..+ |++.-.-...-++.++ +.+ +++.+|. ++|. |||||.+| .|.+
T Consensus 290 ~VPvG~DQ~~-hlel~Rdia~rfn~~~-p~~-~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDP-YFRLARDLAPRMGHPK-NAY-LLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHH-HHHHHHHHTTTTTSCC-CEE-EEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHH-HHHHHHHHHHHhCCCC-Cee-ecCCcccCCCCCCCccCCCCCCCeeee
Confidence 5678999775 6655444433343322 324 5667665 6775 99999998 5654
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.057 Score=59.25 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=42.8
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
|++|||... .+.+..++|+..++.++.+|.++|++|...+.||||+.+-
T Consensus 112 ~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~ 163 (878)
T 2v0c_A 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ 163 (878)
T ss_dssp HHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCC
Confidence 467899865 4567888899999999999999999999999999998764
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.038 Score=53.80 Aligned_cols=68 Identities=26% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHH--HHHHHh-ccC---CCC--CcEEEe--eeeee-e-CC-ccccccc---CCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENE--IAQSCA-ACQ---DSN--VSYWMH--NGHVT-N-NN-EKMSKSL---GNF 174 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~--~a~~~a-~~~---~~~--~~~~~h--~g~l~-~-~G-~KMSKSl---GN~ 174 (421)
-|+.+.+-+..|+..+|.|..+ |++.- +|...- .++ +.+ +..+++ +..|. + +| .|||||. ||.
T Consensus 134 lQaaDil~~~ad~vpvG~DQ~~-hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~ 212 (341)
T 3sz3_A 134 LMAADILLYGAHQVPVGSDQKQ-HLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNV 212 (341)
T ss_dssp HHHHHHHTTTCSEECCCGGGHH-HHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGC
T ss_pred HHHHHHHHcCCCEEEeccchHH-HHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCe
Confidence 3566666667899999999765 66543 333322 123 221 222233 22333 4 57 6999999 788
Q ss_pred cCHHH
Q 014658 175 FTIRQ 179 (421)
Q Consensus 175 i~~~d 179 (421)
|.+.|
T Consensus 213 I~L~D 217 (341)
T 3sz3_A 213 ITLLE 217 (341)
T ss_dssp CBTTC
T ss_pred eecCC
Confidence 87643
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=91.84 E-value=0.046 Score=53.34 Aligned_cols=68 Identities=25% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHH--HHHHHhc-cCCCC--CcEEEe--eeeee-e-CC-cccccccC---CccCH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENE--IAQSCAA-CQDSN--VSYWMH--NGHVT-N-NN-EKMSKSLG---NFFTI 177 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~--~a~~~a~-~~~~~--~~~~~h--~g~l~-~-~G-~KMSKSlG---N~i~~ 177 (421)
-|+.+.+-+..|+..+|.|..+ |++.- +|...-. +++.+ +..+++ ...+. + +| .|||||.+ |.|.+
T Consensus 143 lQAaDil~~~ad~vpvG~DQ~~-hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L 221 (346)
T 3n9i_A 143 LMAADILLYQTNQVPVGEDQKQ-HLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIEL 221 (346)
T ss_dssp HHHHHHHTTTCSEECCCGGGHH-HHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred HHHHHHHHhCceEEEeccchHH-HHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecC
Confidence 3566666667899999999765 66543 3333221 22222 222233 12332 4 67 59999997 67865
Q ss_pred HH
Q 014658 178 RQ 179 (421)
Q Consensus 178 ~d 179 (421)
.|
T Consensus 222 ~D 223 (346)
T 3n9i_A 222 LE 223 (346)
T ss_dssp TS
T ss_pred CC
Confidence 43
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=0.43 Score=46.93 Aligned_cols=59 Identities=12% Similarity=-0.074 Sum_probs=35.5
Q ss_pred CCCceEEeecccCcCcchHHHHHHHHhccC---CCCCcEEEeeeeee-eCCcccccccCC-ccCHH
Q 014658 118 SSKFDIHGGGIDLIFPHHENEIAQSCAACQ---DSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIR 178 (421)
Q Consensus 118 g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~---~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~ 178 (421)
|+...+-..|.|..+ |.+...-...-++. .+.+-. +|+-++. ++|.|||||..| .|.+.
T Consensus 206 gy~a~~VPVG~DQ~~-hleltRdiA~rfn~~~~~~~P~~-~~~~~~pgldG~KmS~S~~ns~I~l~ 269 (372)
T 3a04_A 206 GYRHVVVPVGADQDP-HLRLTRDLADRMAGVVELERPAS-TYHKLQPGLDGRKMSSSRPDSTIFLT 269 (372)
T ss_dssp CCCCEEEEEEGGGHH-HHHHHHHHHHHTTTTSCCCCCEE-EEECCCBCTTSSBCCTTSGGGSCBTT
T ss_pred CccceecccchhhHH-HHHHHHHHHHHhcCcccccChhh-hhhcccCCCCCCccCCCCCCcccccC
Confidence 444556666999765 77765444433432 122223 5556664 699999999854 66543
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=84.28 E-value=0.32 Score=53.21 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=35.1
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
|++||+... ...+...+|...++.++.+|.++|++|...+.||||+.+-
T Consensus 132 l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~ 183 (880)
T 4arc_A 132 LKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQ 183 (880)
T ss_dssp HHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred HHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcC
Confidence 357888753 2455566799999999999999999999999999997654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 421 | ||||
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 2e-55 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 6e-31 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 3e-26 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 1e-19 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 4e-19 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 6e-17 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 9e-15 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 5e-11 | |
| d1li5a1 | 87 | a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (Cy | 5e-05 | |
| d1j09a2 | 305 | c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS | 7e-05 | |
| d1iq0a2 | 370 | c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS | 0.002 |
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 183 bits (466), Expect = 2e-55
Identities = 115/216 (53%), Positives = 134/216 (62%), Gaps = 1/216 (0%)
Query: 1 MADLQCLPPTYQPRVSDHM-EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQR 59
L L P +PR + H+ E I+ I GDV F V P YG LS Q
Sbjct: 100 FDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQD 159
Query: 60 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
L+ +AG RV V KRNP DF LWK +K GEPSW SPWG GRPGWHIECSAM+ L +
Sbjct: 160 LDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGN 219
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179
FDIHGGG DL+FPHHENEIAQS A V+YWMH+G V + EKMSKSLGNFFT+R
Sbjct: 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRD 279
Query: 180 ITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDA 215
+ + Y +R+FL+S HYRS LNYS L A A
Sbjct: 280 VLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA 315
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 118 bits (296), Expect = 6e-31
Identities = 22/209 (10%), Positives = 49/209 (23%), Gaps = 7/209 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
+ L + + I + + + + K +
Sbjct: 113 VEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQ-PPLPENWWPA 171
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
R + + + +K + E D G + W ++ +
Sbjct: 172 MVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPM---RWSHFG 228
Query: 121 FDIHGGGIDLIFPHHENEIAQSCA-ACQDSNVSYWMHNGHVTNNNE--KMSKSLGNFFTI 177
D G D + + + + V + KMS S GN +
Sbjct: 229 VDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILL 288
Query: 178 RQITERYHPLALRHFLISAHYRSPLNYSV 206
+ E P +R + +
Sbjct: 289 SDLYEVLEPGLVRFIYARHRPNKEIKIDL 317
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 106 bits (265), Expect = 3e-26
Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 11/155 (7%)
Query: 62 NNRAGERVAVDSRKRNPADFALWKAAKAG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ V + + L+ +A + R G E +
Sbjct: 195 TRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQT 254
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSN---------VSYWMHNGHVTNNNEKMSKSL 171
IH G D I H A A + + N ++T +K S S
Sbjct: 255 RVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSR 314
Query: 172 GNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 205
+ + + + LR++L + ++S
Sbjct: 315 NWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFS 349
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 87.4 bits (215), Expect = 1e-19
Identities = 21/132 (15%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 92 PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 151
P PWG P + + L + +
Sbjct: 206 PKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPH 265
Query: 152 S-----------------YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
+ + + + KMSK+LGN + E+Y ALR++L+
Sbjct: 266 AVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLL 325
Query: 195 S-AHYRSPLNYS 205
Y S
Sbjct: 326 REIPYGQDTPVS 337
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 85.7 bits (211), Expect = 4e-19
Identities = 28/200 (14%), Positives = 55/200 (27%), Gaps = 31/200 (15%)
Query: 36 YVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWD 95
+VV G + + L A+ + N + + S D
Sbjct: 137 FVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRD 196
Query: 96 SPWGPGRPGWHIECSAMSAHYLSSKF----------------------------DIHGGG 127
+P+ + H G
Sbjct: 197 APYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIG 256
Query: 128 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 187
D+++ H A + + ++H G+VT N KMSKS G F +
Sbjct: 257 KDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNHFDAD 315
Query: 188 ALRHFLIS--AHYRSPLNYS 205
+LR++ + + ++ +
Sbjct: 316 SLRYYYTAKLSSRIDDIDLN 335
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 80.4 bits (197), Expect = 6e-17
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 7/159 (4%)
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKF- 121
+ E + +R D G P+ + + L ++
Sbjct: 291 DLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPE 350
Query: 122 -----DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFF 175
D++ G D + I S A S + + +G V +KMSKSLGN
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 176 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 214
Q+ ++ R ++ S Y + + S L SD
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 73.4 bits (179), Expect = 9e-15
Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 26/238 (10%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR------ 54
+++ P Q + + + GD+ F E+
Sbjct: 185 DLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 244
Query: 55 ----LSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECS 110
+S Q ++ D + N + + SP
Sbjct: 245 KDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWF 304
Query: 111 AMSAHYLSS--------------KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 156
+ + LS+ D+ G D++F + +
Sbjct: 305 SSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLL 364
Query: 157 NGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSA 212
+G V + +KMSKS GN ++ ERY ALR LI A + + L+ A
Sbjct: 365 HGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMA 422
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 61.9 bits (149), Expect = 5e-11
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 2/116 (1%)
Query: 92 PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 151
W H S D GID +
Sbjct: 327 DVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAF 386
Query: 152 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 205
+ +G + + +KMSKS GN I ++ ALR ++ A + +
Sbjct: 387 KNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 442
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (92), Expect = 5e-05
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 245 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIES 304
A F M DD NT D + +N + +
Sbjct: 15 VAPAGGEAFEARFIEAMDDDFNTPEAY-SVLFDMAREVNRLKA------------EDMAA 61
Query: 305 LRKIENEVKEVLRILGLLP 323
+ + ++++ +LGLL
Sbjct: 62 ANAMASHLRKLSAVLGLLE 80
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Score = 42.1 bits (98), Expect = 7e-05
Identities = 20/200 (10%), Positives = 46/200 (23%), Gaps = 16/200 (8%)
Query: 9 PTYQPRVSDHMEQIKDMITQIINNDCAYV---VEGDVFFAVEKSPNYGRLSGQRLENNRA 65
P R S+ + + +++ AY ++ ++ Y +
Sbjct: 76 PHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAE 135
Query: 66 GE---------RVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY 116
R+ V L G+ A
Sbjct: 136 ERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDD 195
Query: 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFT 176
+ + + + A ++ + K+SK +
Sbjct: 196 HLMGVTDVIRAEEWLVSTPIHVLL--YRAFGWEAPRFYHMPLLRNPDKTKISKRKS-HTS 252
Query: 177 IRQITER-YHPLALRHFLIS 195
+ + P ALR++L
Sbjct: 253 LDWYKAEGFLPEALRNYLCL 272
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Score = 37.2 bits (85), Expect = 0.002
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 140
F WK + P PG + SA + K + +D+ H + +
Sbjct: 212 FQFWKMGILEGLRFRPYENPYYPG--LRTSAPEGEAYTPKAEETINVVDVRQSHPQALVR 269
Query: 141 QSCAAC---QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
+ A + ++ + V +MS G ++ ++ E
Sbjct: 270 AALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 314
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.97 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.95 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.95 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.94 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.93 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.9 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.75 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.48 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.24 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.16 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.08 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 98.85 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 98.76 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 98.75 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 98.32 | |
| d1li5a1 | 87 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 98.2 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 97.53 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 97.51 | |
| d1f7ua1 | 124 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 97.3 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 97.24 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 97.12 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 97.09 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 96.87 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 96.69 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 96.25 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 95.35 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 92.48 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 90.02 |
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.7e-40 Score=318.44 Aligned_cols=213 Identities=55% Similarity=0.972 Sum_probs=188.3
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
+++||.+|+.++++++|+.+++..+++|.++|++|.. .+.+|+++...+.||..+...+.++..|.++......++|.|
T Consensus 101 ~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (315)
T d1li5a2 101 DALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMD 180 (315)
T ss_dssp HHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTC
T ss_pred HhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccccccCccccccccccccCCcccccccccChhh
Confidence 4689999999999999999999999999999999976 678999999999999999888888888888777778899999
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV 160 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l 160 (421)
+++||.++.+++.+.+.||.+.|+|+++|...-.+.||..+|+|++|.|+.++|+.+++++..+..+..++.+|+|+|||
T Consensus 181 ~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (315)
T d1li5a2 181 FVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMV 260 (315)
T ss_dssp EEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCBCCE
T ss_pred hhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccccccccccchhhhcccccccccEEEEEEEE
Confidence 99999999999999999999999999999988889999999999999999999999999999998888889999999999
Q ss_pred eeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHH
Q 014658 161 TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 161 ~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~ 214 (421)
+++|+|||||+||||+|+|+++.||+|++|||||+.+++++++||++.|.++.+
T Consensus 261 ~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~~~~s~ldFs~e~l~~a~~ 314 (315)
T d1li5a2 261 MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARA 314 (315)
T ss_dssp EETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHH
T ss_pred ecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998764
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.5e-32 Score=267.45 Aligned_cols=211 Identities=18% Similarity=0.150 Sum_probs=147.3
Q ss_pred CCCCCCCCCCccccccc-cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC---CCcccccccc------------ch---
Q 014658 1 MADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS---PNYGRLSGQR------------LE--- 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~-~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~---~~Yg~ls~~~------------~~--- 61 (421)
|++|||..|..++++++ |.+.+.+++++|.++|++|...+.||||+.+- +++..+++.. ++
T Consensus 81 ~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~~~g~~~~~~~~~~~f~~l~~~~ 160 (350)
T d1pfva2 81 FAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPSFS 160 (350)
T ss_dssp HHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGTTTCCCCEEEEEEEEEECGGGGH
T ss_pred HHHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCceeccCCCccceecchheeehHHHH
Confidence 46799999989888877 55666688999999999999999999998763 3333333321 11
Q ss_pred ----hhhCCCCccccccccCCCcccccccccCCCCcccCCC-------CCCCCCCchhhHH--HH---------------
Q 014658 62 ----NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-------GPGRPGWHIECSA--MS--------------- 113 (421)
Q Consensus 62 ----~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spw-------g~grPgWhiecsa--m~--------------- 113 (421)
+..... +..+..++..++.+|+...+...+|..+| ..+.+.|...|+. +.
T Consensus 161 ~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (350)
T d1pfva2 161 EMLQAWTRSG--ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVS 238 (350)
T ss_dssp HHHHHHHTTS--CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHhhcC--CCchhhHHHHHHHhhccCCccccccccccCCccccCCCCcccccccccccchhhhhhccccccccchh
Confidence 111111 11122222335556655444334444444 2222222222221 11
Q ss_pred -Hh---hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHH
Q 014658 114 -AH---YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189 (421)
Q Consensus 114 -~~---~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~l 189 (421)
.. ..+...++|++|+|++||||+++++|++|....++.++|+| |||+++|+|||||+||+|+|.|++++||+|++
T Consensus 239 ~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~~~~~~~~~~-g~l~~~G~KMSKS~GN~i~~~dll~~~g~D~l 317 (350)
T d1pfva2 239 FDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNHFDADSL 317 (350)
T ss_dssp HHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEE-CCEEETTBSCCTTTTCCCBHHHHHHHSCHHHH
T ss_pred hhhccccCCCcceeeccchhhHHHHHhhHHHHhhhcCCCccceEEec-ccEEECCeEccCcCCCCCCHHHHHHHCCHHHH
Confidence 11 11223458999999999999999999999887888887666 99999999999999999999999999999999
Q ss_pred HHHHhhc--CCCCCcccCHHHHHHHHH
Q 014658 190 RHFLISA--HYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 190 R~~ll~~--~~~~d~~fs~e~l~~~~~ 214 (421)
||||++. ...+|++||++.|.++.|
T Consensus 318 R~~l~s~~~~~~~d~dfs~~~~~~~~N 344 (350)
T d1pfva2 318 RYYYTAKLSSRIDDIDLNLEDFVQRVN 344 (350)
T ss_dssp HHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCCHHHHHHHHH
Confidence 9999984 456789999999988765
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.95 E-value=8e-30 Score=250.60 Aligned_cols=119 Identities=17% Similarity=-0.060 Sum_probs=105.0
Q ss_pred CCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccC---------CCCCcEEEeeeeeeeCCcc
Q 014658 96 SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ---------DSNVSYWMHNGHVTNNNEK 166 (421)
Q Consensus 96 spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~---------~~~~~~~~h~g~l~~~G~K 166 (421)
++++.++||||++|+.|.....|.+.++|++|.|+.+||+.+++|++.+.+. -++++.++|||||+++|+|
T Consensus 230 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~K 309 (361)
T d1rqga2 230 TIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKK 309 (361)
T ss_dssp HHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEE
T ss_pred cccCcccCCchhHHHHhhhhccCCcceEEeccccccccchhhHHHHHHHhhccccccccccCCCCCEEEEeeeEEeCCEe
Confidence 3445578999999999999999999999999999999999999999999752 1233444677999999999
Q ss_pred cccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH
Q 014658 167 MSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 167 MSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~ 214 (421)
||||+||+|+|.|++++||+|++||||++. ++++|++||++.++...|
T Consensus 310 MSKSlGN~I~~~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n 358 (361)
T d1rqga2 310 FSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRIN 358 (361)
T ss_dssp CBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCCCCCCCHHHHHHHhc
Confidence 999999999999999999999999999985 889999999999987655
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.7e-28 Score=239.88 Aligned_cols=213 Identities=18% Similarity=0.095 Sum_probs=153.5
Q ss_pred CCCCCCCCCccccccc-cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccc-------
Q 014658 2 ADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDS------- 73 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~-~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~------- 73 (421)
+.|||.+++.++..+. ++..+..+++.+.++|++|.....|+++.++...|.............|...+...
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (348)
T d2d5ba2 83 DLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFR 162 (348)
T ss_dssp HHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEEC
T ss_pred HhcCccccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccccccccCCCceEEecccccccc
Confidence 5689987766666655 55677778889999999999999999998876655543322222222232221100
Q ss_pred -----------cccCCCccccccc--------------ccCCCCcccCCCCCCCCCCch--hhHHHH------Hh-----
Q 014658 74 -----------RKRNPADFALWKA--------------AKAGEPSWDSPWGPGRPGWHI--ECSAMS------AH----- 115 (421)
Q Consensus 74 -----------~K~~p~DF~LWk~--------------~~~~~~~w~spwg~grPgWhi--ecsam~------~~----- 115 (421)
..+.+.+...+.. ..+..+.|..+||.++|+|+. .|+.+. ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (348)
T d2d5ba2 163 MEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPE 242 (348)
T ss_dssp GGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTT
T ss_pred hHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCCCCcccccCCcccccchhccchhhhhhhcCCc
Confidence 1111222222111 112235788999999998743 222222 11
Q ss_pred ----hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHH
Q 014658 116 ----YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRH 191 (421)
Q Consensus 116 ----~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~ 191 (421)
..+.+.++|++|.|+.++|+..+.+++.+....|++++|+|++++..+|+|||||+||+|+|.|++++||+|++||
T Consensus 243 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~ 322 (348)
T d2d5ba2 243 GEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRY 322 (348)
T ss_dssp CHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHH
T ss_pred hhhhccccchheeeehhhccchhhhhhhhhccccccCCCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHH
Confidence 0123578999999999999999999998887788999999977778999999999999999999999999999999
Q ss_pred HHhh-cCCCCCcccCHHHHHHHHH
Q 014658 192 FLIS-AHYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 192 ~ll~-~~~~~d~~fs~e~l~~~~~ 214 (421)
||++ .++++|++||++.|++..|
T Consensus 323 ~l~~~~p~~~d~dFs~~~~~~~~n 346 (348)
T d2d5ba2 323 YLLREIPYGQDTPVSEEALRTRYE 346 (348)
T ss_dssp HHHHHSCTTSCEECCHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHc
Confidence 9998 4999999999999988665
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=4.9e-28 Score=243.68 Aligned_cols=96 Identities=25% Similarity=0.251 Sum_probs=87.0
Q ss_pred CCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeee-eeCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 118 SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 118 g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
+.|.|||++|+||++||+.+++|+++++.++ ||.++++| ||+ +.+|+|||||+||+|+|.|++++||+|++||||++
T Consensus 326 ~~p~di~~~G~Di~~~h~~~~~a~~~~~~~~~p~~~v~~h-g~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~ 404 (425)
T d1ivsa4 326 FYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIY 404 (425)
T ss_dssp SCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEE-CCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCceEEEEEehhhhHHHHHHHHHHHHhcCCCccceEEEc-ceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHh
Confidence 3578999999999999999999999999875 78889777 774 58999999999999999999999999999999998
Q ss_pred c-CCCCCcccCHHHHHHHHH
Q 014658 196 A-HYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 196 ~-~~~~d~~fs~e~l~~~~~ 214 (421)
. +..+|++||++.++++.|
T Consensus 405 ~~~~~~d~dF~~~~~~~~~n 424 (425)
T d1ivsa4 405 LATGGQDIRLDLRWLEMARN 424 (425)
T ss_dssp HCCTTCCEECCHHHHHHHHH
T ss_pred cCCCCCCCccCHHHhhhccC
Confidence 4 889999999999987654
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=3e-26 Score=232.81 Aligned_cols=96 Identities=27% Similarity=0.239 Sum_probs=87.3
Q ss_pred CCCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 118 SSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 118 g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
..|.|+|++|+|++++|+...++++.++.+ .||.++++| |||+ .+|+|||||+||+|+|.|++++||+|++||||++
T Consensus 352 ~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s 430 (450)
T d1ffya3 352 SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS 430 (450)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT
T ss_pred cCCCcccccCcchhhHHHHHHHHHHHHhcCCCCcceEEEc-ceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHc
Confidence 357899999999999999999999988877 488889776 9975 6999999999999999999999999999999998
Q ss_pred cCCCCCcccCHHHHHHHHH
Q 014658 196 AHYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 196 ~~~~~d~~fs~e~l~~~~~ 214 (421)
+++++|++||++.|+++.+
T Consensus 431 ~~~~~D~~fs~~~l~~~~~ 449 (450)
T d1ffya3 431 TDYLADVRISDEILKQTSD 449 (450)
T ss_dssp SCTTSCEECCHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHhhc
Confidence 8999999999999988754
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=5.3e-24 Score=215.47 Aligned_cols=93 Identities=19% Similarity=0.181 Sum_probs=80.4
Q ss_pred CceEEeecccCcC--cchHHHHHHHHhccCCCCCcEEEeeeee-eeCCcccccccCCccCHHHHHHhcCchHHHHHHhh-
Q 014658 120 KFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS- 195 (421)
Q Consensus 120 ~~Dih~gG~Dli~--pH~~~~~a~~~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~- 195 (421)
|.++|++|+|+.+ ||+..+++++.+ +..||+++++| ||+ +.+|+|||||+||+|+|.|++++||+|++||||++
T Consensus 355 p~~~~~~g~d~~~~~fh~l~~~~~l~~-~~~~~~~v~~h-g~iL~~~G~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~ 432 (452)
T d1ilea3 355 PADFIAEGIDQTRGWFNSLHQLGVMLF-GSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVS 432 (452)
T ss_dssp SBSBEEEEGGGGGTHHHHHHHHHHHHH-SSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHH
T ss_pred cchhheecCceechhhHHHHHhHHHHc-CCCCCCeEEEe-eEEECCCCcccCCCCCCCcCHHHHHHHcCcHHHHHHHHhc
Confidence 5677777777765 788999998863 45688999777 776 58999999999999999999999999999999998
Q ss_pred cCCCCCcccCHHHHHHHHH
Q 014658 196 AHYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 196 ~~~~~d~~fs~e~l~~~~~ 214 (421)
+++++|++||++.|+++.+
T Consensus 433 ~~~~~d~~Fs~~~~~e~~~ 451 (452)
T d1ilea3 433 APPEADRRFGPNLVRETVR 451 (452)
T ss_dssp SCSSSCEECCHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHhHHhc
Confidence 5999999999999998754
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=2.3e-19 Score=169.99 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=89.2
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc--CCCCCcEEEeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVSYWMHNG 158 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~--~~~~~~~~~h~g 158 (421)
...|.......+.+..+||.+++.|...|.+. +.+.++++|+.|+|++++|+.+++++.+++. +.+++.+ +|||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 267 (317)
T d1irxa2 192 KVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLS-LMYE 267 (317)
T ss_dssp CEEECCSSSCCCEECTTSSCEEECHHHHHHHH---HHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBC-CEEC
T ss_pred cceeeecccccccccccccCCcccccccchhh---hccCceeEEEecceecccchhhhHhhhhhhhhcCCCCcEE-EEEE
Confidence 33344333333556678899999999877544 3445789999999999999999999876653 3444445 6779
Q ss_pred eeeeCC--cccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccC
Q 014658 159 HVTNNN--EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 205 (421)
Q Consensus 159 ~l~~~G--~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs 205 (421)
||+++| .|||||+||+|+|.|+++.||+|++|||+|+..+.++++|+
T Consensus 268 ~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~~l~~~~~~~i~FD 316 (317)
T d1irxa2 268 FVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKID 316 (317)
T ss_dssp CEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEEC
T ss_pred EEEECCccccccCCCCccccHHHHHHHCCHHHHHHHhcCCCCCCCcCCC
Confidence 999976 49999999999999999999999999999999889999997
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=5.2e-15 Score=150.17 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=52.0
Q ss_pred eeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHH
Q 014658 157 NGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSAS 213 (421)
Q Consensus 157 ~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~ 213 (421)
||+|. -+|+|||||+||||+|.+++++||+|+||||||+ +++++|++||.+.++.+.
T Consensus 435 ~g~v~d~~g~KMSKSlGNVIdP~~iI~~YGADalRl~ll~~s~~g~di~~s~~~ieg~~ 493 (494)
T d1h3na3 435 DGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAW 493 (494)
T ss_dssp TSSEEEEEEEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHH
T ss_pred CccEEeCCceeCCCCCCCcCCHHHHHHHhCHHHHHHHHHhcCCcccCCCcChhcCeecc
Confidence 47776 4799999999999999999999999999999998 489999999999998864
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=7.5e-12 Score=121.53 Aligned_cols=165 Identities=12% Similarity=-0.001 Sum_probs=116.8
Q ss_pred CCCCCCCCCccccccc-cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 2 ADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~-~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
+.|||. .+.+-.=|+ +-+.+...++.|.++|++|+.+|.++|+.+. ||. +.|
T Consensus 147 ~~l~i~-fD~~~~Es~~~~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~---~g~-----------------------~~~ 199 (348)
T d1f7ua2 147 ARLNIK-YDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTK---FNK-----------------------KLG 199 (348)
T ss_dssp HHTTCC-CSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGG---TCT-----------------------TTC
T ss_pred HHHhhh-hhhhhhcccccccchHHHHHHHHhhccccccCCcccccchh---hcc-----------------------ccc
Confidence 457776 466555555 4455667888999999999999999998653 331 124
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhc--CCCceEEeecccCcCcchHHHHHHHHhcc--CCCCCcEEEe
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYL--SSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVSYWMH 156 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~l--g~~~Dih~gG~Dli~pH~~~~~a~~~a~~--~~~~~~~~~h 156 (421)
.++++++ +|.+.+.++ .|+.+..++- +...-|.+.|.| |+.+.+-+..++. +..+.+.|.|
T Consensus 200 ~~vl~ks-DG~~tY~t~----------DiAy~~~K~~~~~~D~~I~V~g~d----q~~~~~~l~~~l~~lg~~~~~~~~h 264 (348)
T d1f7ua2 200 KAIVQKS-DGTTLYLTR----------DVGAAMDRYEKYHFDKMIYVIASQ----QDLHAAQFFEILKQMGFEWAKDLQH 264 (348)
T ss_dssp EEEEECT-TSCCCHHHH----------HHHHHHHHHHHHCCSEEEEECCGG----GHHHHHHHHHHHHHTTCGGGGGEEE
T ss_pred cceeccC-CCccceecc----------hHHhhhhhhhccCCCEEEEecccc----cchhhhhHHHHHHHhCCCcccceee
Confidence 5566654 443433322 5666666654 334447788888 7777765544432 3445666688
Q ss_pred eeeeeeCCcccccccCCccCHHHHHHh----------------------------cCchHHHHHHhhcCCCCCcccCHHH
Q 014658 157 NGHVTNNNEKMSKSLGNFFTIRQITER----------------------------YHPLALRHFLISAHYRSPLNYSVLQ 208 (421)
Q Consensus 157 ~g~l~~~G~KMSKSlGN~i~~~dll~~----------------------------yg~D~lR~~ll~~~~~~d~~fs~e~ 208 (421)
.++-++ .||||++||+|++.||+++ .|.+++||++|+.+..+++.|+++.
T Consensus 265 ~~~g~v--~kMStR~G~~i~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ia~~vgv~ai~y~~L~~~~~~~~~Fd~d~ 342 (348)
T d1f7ua2 265 VNFGMV--QGMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWER 342 (348)
T ss_dssp ECCCCE--ESCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHH
T ss_pred ecCCcc--ccccccCCCceEHHHHHHHHHHHHHHHHHhccCcCCChhhHHHHHHHhhHHheehhhhhcCCCCCCEECHHH
Confidence 777666 4899999999999999985 7888999999999999999999987
Q ss_pred HH
Q 014658 209 LD 210 (421)
Q Consensus 209 l~ 210 (421)
+.
T Consensus 343 ~l 344 (348)
T d1f7ua2 343 ML 344 (348)
T ss_dssp HH
T ss_pred hc
Confidence 63
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=8e-12 Score=122.33 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=124.1
Q ss_pred CCCCCCCCccccccccH--HHHHHHHHHHHHcCCeeeeC-----CcEEEeccCCCCccccccccchhhhCCCCccccccc
Q 014658 3 DLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYVVE-----GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRK 75 (421)
Q Consensus 3 ~Lnv~~p~~~~r~t~~i--~~i~~~i~~L~~~g~aY~~~-----~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K 75 (421)
.|||. -+.+..=|+.+ ..+-..+..|.++|.+|..+ |.+++|.+.+..-+....+-+-. .-|... -.
T Consensus 133 ~l~v~-fD~~~~Es~l~~~~~~~~~i~~l~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~k-sDG~~t---Y~- 206 (370)
T d1iq0a2 133 ALNAR-YDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLR-SNGTAT---YY- 206 (370)
T ss_dssp HTTCC-CSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEEC-TTSCBC---HH-
T ss_pred cccee-eceeeeecccccccchhhhHhhhhhccceeeccccccceEEEecCccccccccCcceeeEe-ccCCce---Ee-
Confidence 45554 34444434322 23567778888899999764 78888877553212111000000 011110 00
Q ss_pred cCCCccc--ccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCC--
Q 014658 76 RNPADFA--LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV-- 151 (421)
Q Consensus 76 ~~p~DF~--LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~-- 151 (421)
.+|.| +||......+.|..+++...+++.|.|+ -.+.....+|-.+-..|.-..||.....+...+.+.+..
T Consensus 207 --t~DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~~--d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~ 282 (370)
T d1iq0a2 207 --AKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAP--EGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAE 282 (370)
T ss_dssp --HHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEE--EEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHT
T ss_pred --ccHHHHHhhhcccccccceeccccCccceeEeecc--ccccchhhhhHHHHHHhccchHHHHHHHHHHHHhCCCchhh
Confidence 02554 4666555556788888877888776543 233333457766666677777999888877666553321
Q ss_pred c-EEEeeeeeeeCCcccccccCCccCHHHHHHh-------------------------cCchHHHHHHhhcCCCCCcccC
Q 014658 152 S-YWMHNGHVTNNNEKMSKSLGNFFTIRQITER-------------------------YHPLALRHFLISAHYRSPLNYS 205 (421)
Q Consensus 152 ~-~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-------------------------yg~D~lR~~ll~~~~~~d~~fs 205 (421)
+ ..+..|+|..+|+||||+.||+|++.||+++ .|.+++||++|+.+..+++.|+
T Consensus 283 ~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd 362 (370)
T d1iq0a2 283 KAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFR 362 (370)
T ss_dssp TEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEEC
T ss_pred ceeeEEEEEEecCCccccccCCCeeEHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHhhhhheehhHhhcCCCCCceEC
Confidence 1 2234488888999999999999999999986 8999999999999999999999
Q ss_pred HHHHH
Q 014658 206 VLQLD 210 (421)
Q Consensus 206 ~e~l~ 210 (421)
++.+.
T Consensus 363 ~d~~l 367 (370)
T d1iq0a2 363 YQEAL 367 (370)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98763
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.08 E-value=1.8e-10 Score=109.52 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=106.8
Q ss_pred CCCCCCC--------CCccccccccHHHHHHHHHHHHHcCCeeeeCCcEE-EeccC--CCCccc----cccccch-hhhC
Q 014658 2 ADLQCLP--------PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVF-FAVEK--SPNYGR----LSGQRLE-NNRA 65 (421)
Q Consensus 2 ~~Lnv~~--------p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vy-f~v~~--~~~Yg~----ls~~~~~-~~~~ 65 (421)
+.||+.. |...++.|+|++.+++++++|+++|+||.-.-+-. +.... ...|.. ++....+ ....
T Consensus 61 ~wLgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (305)
T d1j09a2 61 KWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARR 140 (305)
T ss_dssp HHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHT
T ss_pred HHHhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhccCCCCccccchhhhHHHHhhc
Confidence 3467763 33567999999999999999999999996532211 11100 011111 1111111 1112
Q ss_pred CCCccccccccCCCcccccccccCCCC-----cccCCC---CCCCCCCchhhHHHHHhhcCCCceEEeecccCcC--cch
Q 014658 66 GERVAVDSRKRNPADFALWKAAKAGEP-----SWDSPW---GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF--PHH 135 (421)
Q Consensus 66 g~~v~~~~~K~~p~DF~LWk~~~~~~~-----~w~spw---g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~--pH~ 135 (421)
|..--+ --|....+..-|+..--+.. ....++ ..|.|+||+.|+.. ....| ++..+-|.|++. |++
T Consensus 141 ~~~~~~-R~k~~~~~~~~~~d~i~~~~~~~~~~~~D~vi~r~dg~p~Y~~A~vvD-D~~~g--ithviRG~Dl~~~t~~q 216 (305)
T d1j09a2 141 GEPHVI-RLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVD-DHLMG--VTDVIRAEEWLVSTPIH 216 (305)
T ss_dssp TCCCEE-EECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHH-HHHTT--CCEEEEEGGGGGGHHHH
T ss_pred CCcceE-EEeccccCCccccchhhceeeeccccCCCeEEECCCCCeehHHHHHHH-HHHcc--CccccccccceeccHHH
Confidence 221000 00111111111211100000 111222 25899999987554 34454 676777899554 222
Q ss_pred HHHHHHHHhccCCCCCcEEEeeeee-eeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhc--CCC-CCcccCHHHH
Q 014658 136 ENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA--HYR-SPLNYSVLQL 209 (421)
Q Consensus 136 ~~~~a~~~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~--~~~-~d~~fs~e~l 209 (421)
..+..+++. +.+.+| |+..+ ..+|.|||||.|. .++.++.++ |.|+++|-|++.- +.. ..--+|.+.+
T Consensus 217 ---~~l~~~Lg~-~~p~~~-h~~l~~~~~g~KLSKr~~~-~tl~~lr~~G~~peai~~~l~~lG~~~~~~~~~~sl~e~ 289 (305)
T d1j09a2 217 ---VLLYRAFGW-EAPRFY-HMPLLRNPDKTKISKRKSH-TSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEF 289 (305)
T ss_dssp ---HHHHHHHTC-CCCEEE-EECCCBCTTSCBCCTTTSC-CBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHH
T ss_pred ---HHHHHhhcC-CCCcee-eecccccCccccccccCCc-cCHHHHHHcCCCHHHHHHHHHHhCCCCCCCcCcCCHHHH
Confidence 222345544 556675 55655 5699999999987 688888875 9999999988873 222 2234676554
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.85 E-value=3.5e-09 Score=94.97 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=78.3
Q ss_pred HHHHHHHHHHH-HHHHhcCCccc-CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcc
Q 014658 214 DAVFYIYQTLQ-DCEVALSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291 (421)
Q Consensus 214 ~~l~~l~~~l~-~~~~~~~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~p 291 (421)
|.+|||.+|+. ++..++.+..+ .....+.|.+++..+..+.+++.++| ++|++++|++. ++++++.+|+|++..+|
T Consensus 2 N~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~l~~~~N~yi~~~~P 79 (210)
T d1rqga1 2 NNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQP 79 (210)
T ss_dssp TTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 56899998854 44555544322 12223456889999999999999999 99999999999 99999999999999999
Q ss_pred cCchh-hhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 292 KQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 292 w~~~~-~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
|...+ .......+++.+++.++.+..+|. |+|. .+.+++.++
T Consensus 80 W~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~-~a~~i~~~L 123 (210)
T d1rqga1 80 WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLL 123 (210)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHT
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHc
Confidence 96222 112233344444444444444443 3443 344444444
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=4.5e-09 Score=89.41 Aligned_cols=100 Identities=17% Similarity=0.044 Sum_probs=66.5
Q ss_pred HHHHHHHHHHH-HHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhccc
Q 014658 214 DAVFYIYQTLQ-DCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKK 292 (421)
Q Consensus 214 ~~l~~l~~~l~-~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw 292 (421)
|.+|||.+|+. ++..++.+.. +...+.+.+..+..+.+++.++| ++|++++|++. ++++++.+|+|++..+||
T Consensus 3 N~lGNlv~R~~~~~~k~~~g~v----P~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~~~~N~yi~~~~PW 76 (152)
T d2d5ba1 3 DDLGNLVQRTRAMLFRFAEGRI----PEPVAGEELAEGTGLAGRLRPLV-RELKFHVALEE-AMAYVKALNRYINEKKPW 76 (152)
T ss_dssp CCCHHHHHHHHHHHHHHSTTBC----CCCCCCGGGGGGGGHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcC----CCCcchHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 35788888854 4444544322 22223333455677888999999 99999999999 999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHhHhccC
Q 014658 293 QPKQQQLSLIESLRKIENEVKEVLRILGLL 322 (421)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~ 322 (421)
+..+... +.+..++..+.+++++++++
T Consensus 77 ~l~k~d~---~~~~~vl~~~l~~lr~l~il 103 (152)
T d2d5ba1 77 ELFKKEP---EEARAVLYRVVEGLRIASIL 103 (152)
T ss_dssp HHHHHCH---HHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhccch---HHHHHHHHHHHHHHHHHHHH
Confidence 6322211 22334444555555555543
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=2.3e-08 Score=85.78 Aligned_cols=99 Identities=7% Similarity=-0.024 Sum_probs=67.8
Q ss_pred HHHHHH-HHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh
Q 014658 218 YIYQTL-QDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 296 (421)
Q Consensus 218 ~l~~~l-~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~ 296 (421)
||.+|. .++..++.+..+ ....|.++.+.+..+.+.+.++| ++|++++|++. ++++++.+|+|++..+||+..+
T Consensus 3 NL~~R~~~~i~k~~~g~vp---~~~~d~~l~~~~~~~~~~~~~~~-~~~~~~~al~~-i~~~~~~~Nkyi~~~~PWkl~k 77 (162)
T d1pfva1 3 NLASRNAGFINKRFDGVLA---SELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAK 77 (162)
T ss_dssp HHHHHHHHHHHHHSTTBCC---SSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTT
T ss_pred chHHHHHHHHHHhcCCcCC---CCCCCHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHHHHHHHhhhhhcc
Confidence 455553 344555544321 23457889999999999999999 99999999999 9999999999999999996211
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhccC
Q 014658 297 QQLSLIESLRKIENEVKEVLRILGLL 322 (421)
Q Consensus 297 ~~~~~~~~l~~~~~~l~~~l~ilGi~ 322 (421)
. +...+.+.+++..+.+++++++++
T Consensus 78 ~-~~~~~~~~~vl~~~~~~lr~~~~l 102 (162)
T d1pfva1 78 Q-EGRDADLQAICSMGINLFRVLMTY 102 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-chhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 111223334445555555555543
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=5e-07 Score=84.39 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=76.5
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----CCCccccccccchhhhC---------CCC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRLSGQRLENNRA---------GER 68 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~~~Yg~ls~~~~~~~~~---------g~~ 68 (421)
+.||+..+.-..+.|++++...+++++|+++|.||.- |++.+ +.....-.+..+..... ...
T Consensus 62 ~wlgl~~d~~~~~QS~r~~~Y~~~~~~L~~~g~aY~C-----~ct~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 136 (286)
T d1nzja_ 62 EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYC-----TCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPV 136 (286)
T ss_dssp HHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEE-----CCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCC
T ss_pred HHhhhccccccchhHHHHHHHHHHHHHHHHcCCcccc-----cccHHHHHhhccccccccccccchhhhhhhhhcccccc
Confidence 4588887767888999999999999999999999952 22211 11100000011100000 000
Q ss_pred ccc---------cccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHH
Q 014658 69 VAV---------DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 139 (421)
Q Consensus 69 v~~---------~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~ 139 (421)
... ...+....||++++. .|.|.+|+.| +.-....| ++..+=|.| |..+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~D~vi~R~-------------dg~ptY~lA~-vVDD~~~g--IThViRG~D----~l~st~ 196 (286)
T d1nzja_ 137 TQFTDQLRGIIHADEKLAREDFIIHRR-------------DGLFAYNLAV-VVDDHFQG--VTEIVRGAD----LIEPTV 196 (286)
T ss_dssp CEEEETTTEEEECCHHHHHSCCEEECT-------------TSCBCHHHHH-HHHHHHTT--CCEEEEEGG----GHHHHH
T ss_pred cceeeeeeeeeeeccccccccccccCC-------------CCCeeeeehh-hhcccccc--cceeccccc----ccchHH
Confidence 000 001112246666653 5678899865 45455665 555566899 888888
Q ss_pred HHHH---hccCCCCCcEEEeeeeee-eCCcccccccCC
Q 014658 140 AQSC---AACQDSNVSYWMHNGHVT-NNNEKMSKSLGN 173 (421)
Q Consensus 140 a~~~---a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN 173 (421)
.|.. +++.+ .+.+ .|++.++ .+|.|||||.|-
T Consensus 197 ~Q~~L~~~lg~~-~P~y-~H~pli~~~~g~KLSKr~~~ 232 (286)
T d1nzja_ 197 RQISLYQLFGWK-VPDY-IHLPLALNPQGAKLSKQNHA 232 (286)
T ss_dssp HHHHHHHHHTCC-CCEE-EEECBCCC------------
T ss_pred HHHHHHHhhCCC-ccce-eecceEEccCCcccccccCc
Confidence 7763 44433 3444 8999776 689999999763
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=2.5e-06 Score=64.98 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 252 ~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
.+.++|.++|+||||||.|++. |+++++.+|++..... .....+...+..+..+|||...
T Consensus 22 ~~~~~F~~Am~DDlNTp~Ala~-lfel~k~~N~~~~~~~------------~~~~~~~~~l~~~~~vLGll~~ 81 (87)
T d1li5a1 22 AFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAEDM------------AAANAMASHLRKLSAVLGLLEQ 81 (87)
T ss_dssp HHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHTTTTCSCS
T ss_pred HHHHHHHHHHHhhcCcHHHHHH-HHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHHhHcCCCCC
Confidence 4578899999999999999999 9999999999876432 1122334567788999999765
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.53 E-value=5.5e-05 Score=69.51 Aligned_cols=103 Identities=10% Similarity=0.069 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH--HHHHHHh
Q 014658 216 VFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLN 287 (421)
Q Consensus 216 l~~l~~~l~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~--~~N~yi~ 287 (421)
+++|+|+++++.+.+.++.+. .....+|+|++.+++.+...+.++| ++|++++|++. |++|+. ..+.|++
T Consensus 1 YRKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y-~~y~f~~~~~~-l~~F~~~~ls~~Y~~ 78 (273)
T d1ffya1 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNIYQE-VQNFINVELSNFYLD 78 (273)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHCCCCCCHHH
T ss_pred CchHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHH-HhccccchHHH-HHhhhhccchHHHHh
Confidence 357899999888887765421 1123468999999999999999999 99999999999 999996 5688999
Q ss_pred hhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 288 MLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 288 ~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
..++ |........+.....++...+..++++|.
T Consensus 79 ~~Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~la 113 (273)
T d1ffya1 79 YGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLA 113 (273)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 43222222233333344455666677766
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.51 E-value=0.00012 Score=64.85 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCcccC-CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccC
Q 014658 217 FYIYQTLQDCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQ 293 (421)
Q Consensus 217 ~~l~~~l~~~~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~ 293 (421)
+++||+.+++.....++... ......|+|++.+++++...++++| ++|+|+.|++. +++|+ ..++.|++..++..
T Consensus 2 NKlwNa~rF~~~~~~~~~~~~~~~~~~Dkwil~~l~~~i~~v~~~~-~~y~f~~a~~~-l~~F~~~~l~d~Y~e~~k~~~ 79 (218)
T d1ivsa2 2 NKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPAL 79 (218)
T ss_dssp HHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHTTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHH-HHHHhhhhhHHHHHHHHhhhc
Confidence 36789888766555444321 1223457999999999999999999 99999999999 99998 36688888777532
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhHhcc-CCCCChHHHHHHH
Q 014658 294 PKQQQLSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQL 334 (421)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~l~~~l~ilGi-~~~~~~~~~~~~~ 334 (421)
... ......++...+..++.+|.. +|= .++++++.+
T Consensus 80 ~~~----~~~~~~~l~~~l~~~l~ll~P~~Pf-itEeiw~~l 116 (218)
T d1ivsa2 80 KAG----NAHTLRTLEEVLAVLLKLLHPMMPF-LTSELYQAL 116 (218)
T ss_dssp HTT----BHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHH
T ss_pred ccc----cccccchhHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 011 112233445566677777773 332 344555544
|
| >d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=0.00049 Score=55.33 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCch-hhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~-~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
+..++..+..+.+.+..+. ++++++..+.. ++++++.+|+|++......+. .....++..+.++..+|...+++|||
T Consensus 41 e~~Li~~l~~~p~vl~~a~-~~~~Ph~l~~y-l~~La~~F~~fY~~~~Il~~~~~~~~~RL~L~~~~~~vL~~gL~lLGI 118 (124)
T d1f7ua1 41 AKLLIRLLGQYPDVLRNAI-KTHEPTTVVTY-LFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGL 118 (124)
T ss_dssp HHHHHHHHTTHHHHHHHHH-HHCCHHHHHHH-HHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3457777888888888888 99999999999 999999999999987765432 23345788899999999999999999
Q ss_pred CCC
Q 014658 322 LPP 324 (421)
Q Consensus 322 ~~~ 324 (421)
.+.
T Consensus 119 ~~~ 121 (124)
T d1f7ua1 119 TPV 121 (124)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.0013 Score=61.73 Aligned_cols=196 Identities=17% Similarity=0.081 Sum_probs=102.4
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEecc-------CC--------CCccccccccc---hhh
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-------KS--------PNYGRLSGQRL---ENN 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~-------~~--------~~Yg~ls~~~~---~~~ 63 (421)
+-||+.......+-|++++.-.+++++|+++|+||. .||+. +- +-++.-...+. +.+
T Consensus 79 ~WLGl~wD~~~~~QS~r~~~Y~~~~~~L~~~G~aY~-----C~cs~eel~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~ 153 (331)
T d1gtra2 79 EWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKM 153 (331)
T ss_dssp HHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHTCCSSSCCCCCTTTTCCHHHHHHHHHHH
T ss_pred HHHhccccccceecchHHHHHHHHHHhhhhcCCccc-----ccccHHHHHHHHhhhhccCCCCCCCCccccccHHHhhHH
Confidence 458888655666789999999999999999999993 33331 00 00111000000 111
Q ss_pred hCCCC-----c---ccccccc--CCCcccccccccC-CC-CcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCc
Q 014658 64 RAGER-----V---AVDSRKR--NPADFALWKAAKA-GE-PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 131 (421)
Q Consensus 64 ~~g~~-----v---~~~~~K~--~p~DF~LWk~~~~-~~-~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli 131 (421)
..+.. + ..+.... .-.|+.+...... +. .-+ =..|.|-.|+.| +.-....| ++..+=|.|
T Consensus 154 ~~~~~~~~~~~~r~~~~~~~~~~~~~d~~~~~~~~~~~d~v~~---r~dg~ptY~lA~-vVDD~~~g--IThViRG~D-- 225 (331)
T d1gtra2 154 RAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGN---KWCIYPMYDFTH-CISDALEG--ITHSLCTLE-- 225 (331)
T ss_dssp HHTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBT---SCSEEECHHHHH-HHHHHHHT--CSEEEEEGG--
T ss_pred hhccccCCceEEEEecccCCCceeEEccceeeeccCCCccccc---ccccccHHhhhH-HHhhhhhc--ccceecccc--
Confidence 11110 0 0000000 0122222221110 00 000 024557788754 34344455 444445799
Q ss_pred CcchHHHHHHH---HhccCCCCCcEEEeeeeeeeCCcccccccCC---------------ccCHHHHHH-hcCchHHHHH
Q 014658 132 FPHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITE-RYHPLALRHF 192 (421)
Q Consensus 132 ~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~-~yg~D~lR~~ 192 (421)
|..+.+.|. .+++.+.+. ++-|...+..+|.||||+.+- ..++.++-+ .|.|++++=|
T Consensus 226 --~l~~T~~q~~l~~~Lg~~~p~-~~h~~~~l~~~g~~lskr~l~~~~~~~~~~~~dd~~~~sl~~lr~~G~~peai~ny 302 (331)
T d1gtra2 226 --FQDNRRLYDWVLDNITIPVHP-RQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 302 (331)
T ss_dssp --GTTTHHHHHHHHHHSCCSCCC-EEEEECCCCBTTSCCCHHHHHHHHHTTSSSSTTCTTSCBHHHHHHHTCCHHHHHHH
T ss_pred --cccccHHHHHHHHhccCCCCc-ceeeccccccccchhhhcccchhcccCccccccCCCcccHHHHHHCCCCHHHHHHH
Confidence 444555543 445554444 334446667899999998542 346667665 4999999988
Q ss_pred HhhcCCC-CCcccCHHHHHHHH
Q 014658 193 LISAHYR-SPLNYSVLQLDSAS 213 (421)
Q Consensus 193 ll~~~~~-~d~~fs~e~l~~~~ 213 (421)
++.-.+. .|..+....|++..
T Consensus 303 la~LGws~~d~~~e~~sLe~~~ 324 (331)
T d1gtra2 303 CKRIGVTKQDNTIEMASLESCI 324 (331)
T ss_dssp HHHHCCCSSCCCBCHHHHHHHH
T ss_pred HHHhCCCCCCCcccHHhHHHHH
Confidence 8874332 23344555665543
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.12 E-value=0.00087 Score=53.75 Aligned_cols=67 Identities=6% Similarity=0.033 Sum_probs=51.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHh
Q 014658 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 319 (421)
Q Consensus 240 ~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~il 319 (421)
...|++++.++++++.+++++| ++|+++.|++. +++|++.++++......+ ..+ ..++..++.+|
T Consensus 29 ~~~dk~~~~~l~~~i~~v~~~~-e~~~fn~ai~~-l~~f~n~l~~~~~~~~~~----------~~~---~~~l~~ll~ll 93 (128)
T d1h3na1 29 EGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLNALYEYRKDRPVT----------PVY---RTAIRYYLQML 93 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHSCSC----------HHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HhccchHHHHH-HHHhhcccchhhhhhhhH----------HHH---HHHHHHHHHHH
Confidence 3457899999999999999999 89999999999 999999888877654321 122 34455666777
Q ss_pred cc
Q 014658 320 GL 321 (421)
Q Consensus 320 Gi 321 (421)
..
T Consensus 94 ~P 95 (128)
T d1h3na1 94 FP 95 (128)
T ss_dssp TT
T ss_pred HH
Confidence 73
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.09 E-value=0.00079 Score=57.52 Aligned_cols=115 Identities=8% Similarity=0.055 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHh--cCCccc-----CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH--HHHHHH
Q 014658 216 VFYIYQTLQDCEVA--LSPFQE-----HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSL 286 (421)
Q Consensus 216 l~~l~~~l~~~~~~--~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~--~~N~yi 286 (421)
+.+|||+++++..+ +.++.. ......+|+|++++++.+.+++.++| ++|++++|+.. +.+|+. .++.|+
T Consensus 2 ~~klWN~~rF~~~~~~~~~~~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~-~~~~f~~a~~~-l~~f~~~~l~~~Y~ 79 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARA-LRDFVVEDLSQWYV 79 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHSSTTTH
T ss_pred CcHHHHHHHHHHHhccccCCCccCCCChhhCCHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHH-HHHHhHhhhhHHHH
Confidence 46789988775532 222211 11123367899999999999999999 99999999999 999874 456677
Q ss_pred hhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 287 NMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 287 ~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
+-.++ +.. .....+......+...+..++.+|. |+|= .++++++.+
T Consensus 80 e~~K~~l~~~-~~~~~~~~~~~~l~~il~~~l~llaP~~Pf-itEEiw~~l 128 (180)
T d1ilea1 80 RRNRRRFWKN-EDALDREAAYATLYEALVLVATLAAPFTPF-LAEVLWQNL 128 (180)
T ss_dssp HHHHHHHHTC-TTTSSTTHHHHHHHHHHHHHHHHHTTTSTT-HHHHHHHHH
T ss_pred Hhccchhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 76654 211 1111122233345566677777777 4443 455565554
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.87 E-value=0.002 Score=51.75 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhccc-------Cc-hhhhhhhHHHHHHHHHHHHH
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKK-------QP-KQQQLSLIESLRKIENEVKE 314 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw-------~~-~~~~~~~~~~l~~~~~~l~~ 314 (421)
+..++..+..+.+.+..+. ++++++..+.. ++++++.+|+|++..+.. .+ ......++.++.++..+|..
T Consensus 36 E~~Li~~l~~~p~vl~~a~-~~~~Ph~l~~y-l~~La~~F~~fY~~~~~~~~~~~i~~~~~~~~~~RL~L~~a~~~vL~~ 113 (126)
T d1iq0a1 36 ERALALDLLDFEEAVLEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLAT 113 (126)
T ss_dssp HHHHHHHHTTHHHHHHHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHH-HHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888898999 89999999999 999999999999754421 11 12234577888999999999
Q ss_pred HHhHhccCCC
Q 014658 315 VLRILGLLPP 324 (421)
Q Consensus 315 ~l~ilGi~~~ 324 (421)
.+++|||.+.
T Consensus 114 gL~lLGI~~~ 123 (126)
T d1iq0a1 114 GLDLLGIPAP 123 (126)
T ss_dssp HHHHTTCCCC
T ss_pred HhhhcCCCcc
Confidence 9999999864
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.69 E-value=0.00048 Score=65.17 Aligned_cols=77 Identities=23% Similarity=0.178 Sum_probs=51.5
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC-cccccccCCccCHHHHHHhcCchH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 188 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G-~KMSKSlGN~i~~~dll~~yg~D~ 188 (421)
-|+.+++-...|+..||.|. .||.+.-+-...-++... +-. +|+-++. .+| .|||||.||.|.+.| +|+.
T Consensus 174 lQaaDi~~l~~~~vp~G~DQ-~~~i~l~Rdla~r~~~~~-~~~-~~~p~L~gldG~~KMSKS~~naI~L~d-----sp~~ 245 (343)
T d1h3fa1 174 AQAYDSVAIRADVEMGGTDQ-RFNLLVGREVQRAYGQSP-QVC-FLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEA 245 (343)
T ss_dssp HHHHHHHHHTCSEEEEEGGG-HHHHHHHHHHHHHTTCCC-CEE-EEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHH
T ss_pred HHhhhhhhhcccccccccch-HHHHHHHHHHHhhcCccc-cce-eeccccccccccchhhcccccceeeec-----hhHH
Confidence 35555554568999999997 557765555444444433 333 4555554 688 599999999998875 6777
Q ss_pred HHHHHhh
Q 014658 189 LRHFLIS 195 (421)
Q Consensus 189 lR~~ll~ 195 (421)
++=++++
T Consensus 246 i~~Ki~~ 252 (343)
T d1h3fa1 246 MFKKLMR 252 (343)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 7655555
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=96.25 E-value=0.0018 Score=60.51 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=38.1
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~d 179 (421)
.+||++||.|..+.+..=--.+.. +.+.+++ +.++.-.++ .+|+|||||.||.|.+.+
T Consensus 185 ~~~iqiGGsDQ~~Ni~~Grdl~~~-~~~~~~~-~~it~pLl~~~~G~Km~KS~~n~i~l~~ 243 (323)
T d1jila_ 185 NCKIQVGGSDQWGNITSGIELMRR-MYGQTDA-YGLTIPLVTKSDGKKFGKSESGAVWLDA 243 (323)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHH-HHCCCCC-EEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred hchhhhhccccHHHhhhhhhhhhh-hcccccc-eEEecccccchhhhhhhhcCCCCeeeec
Confidence 589999999988876432211222 2233333 335545555 589999999999997654
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.35 E-value=0.0024 Score=59.14 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=31.7
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc-ccccccCCccCHHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQ 179 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKSlGN~i~~~d 179 (421)
|+.+++-...|+.+||.|..+ |+.. +.- +. |-+.+.+++-++. .+|+ |||||.||.|.+.|
T Consensus 155 QaaDil~~~~~~~~~G~DQ~~-~~~l--~rd--l~--~~~~~~~~~~~l~gldG~~KMSKS~~n~I~L~D 217 (306)
T d1j1ua_ 155 QVNDIHYLGVDVAVGGMEQRK-IHML--ARE--LL--PKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (306)
T ss_dssp HHHHHHHHTCSEEEEEGGGHH-HHHH--HHH--HS--SSCCEEEEECCCCCTTCCC-------CSCBTTC
T ss_pred hhcchhhcCcceeccchhhHH-HHHH--hhh--cc--cccceecccccccCcccccccccccccccccCC
Confidence 444544346799999999854 4432 211 11 2233446666665 6885 99999999997654
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=92.48 E-value=0.047 Score=50.33 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=37.2
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~d 179 (421)
.+++++||.|..+.+..=--.+... .++..+ +-++.-.++ .+|.|||||.||.|.+.+
T Consensus 185 ~~~~qiGGsDQ~gNi~~G~dli~~~-~~~~~~-~~lT~PLL~~~~G~K~~ks~~n~i~l~~ 243 (319)
T d2ts1a_ 185 GCRLQIGGSDQWGNITAGLELIRKT-KGEARA-FGLTIPLVTKADGTKFGKTESGTIWLDK 243 (319)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHH-HC--CC-EEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCchhhccchhhhHHHHHHHHHHHh-cccccc-eEeecccccccccceeeecCCCCccccc
Confidence 5899999999887764333222222 232222 335555555 589999999999887643
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.02 E-value=0.064 Score=49.77 Aligned_cols=80 Identities=19% Similarity=-0.022 Sum_probs=46.3
Q ss_pred hhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccc-cCCccCHHHHHHhcC
Q 014658 108 ECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKS-LGNFFTIRQITERYH 185 (421)
Q Consensus 108 ecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKS-lGN~i~~~dll~~yg 185 (421)
.+.-|+.+++-...|+..||.|... |++.-.-...-++. .++-. +|+-++. .+|.||||| .||.|.+.| +
T Consensus 163 YP~lQaaDil~~~ad~v~~G~DQ~~-~i~l~rd~a~r~~~-~~~~~-l~~pll~~l~g~kmsks~~~~~I~l~D-----~ 234 (339)
T d1n3la_ 163 YPGLQALDEEYLKVDAQFGGIDQRK-IFTFAEKYLPALGY-SKRVH-LMNPMVPGLTGSKMSSSEEESKIDLLD-----R 234 (339)
T ss_dssp HHHHHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTC-CCCEE-EEECCCCCSSCC-------CCSCBTTC-----C
T ss_pred ccHHHHHHHHhccCCccccchhHHH-HHHHHHHHHhhhcc-Cccee-eeeccccccccccccccchhhcccccC-----C
Confidence 3345667777678999999999765 66554444333333 33334 5556665 699999997 599888754 4
Q ss_pred chHHHHHHhh
Q 014658 186 PLALRHFLIS 195 (421)
Q Consensus 186 ~D~lR~~ll~ 195 (421)
++.++-=+.+
T Consensus 235 ~~~I~kKI~~ 244 (339)
T d1n3la_ 235 KEDVKKKLKK 244 (339)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 4555544443
|