Citrus Sinensis ID: 014802

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42

MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITVQLNH

ccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccEEEEEEEEEcccccEEEEccccEEEEEcccccccccEEEccEEEEEEEEEEEccEEEEEEEcccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccHHHHHHHHHHccccEEEEcccEEcccccccccc

ccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHEEEEcccccccEEEcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccEEEEEHHHHccccccEEEEEEEEEcccccEEEEccccEEEEEcccccccccEEcccEEEEEEEEEEEccEEEEEEccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEEEccEcccHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHcccEEEEccccEEEEEcccEccc

MSGQTRKKIQKKMKIRGYGLRMDALDEILSFvnrfpdaeDEAIDLLLDQFEhesslkssiidkesvNRVTSVLLQAEAaaegdsgsasnhsAIRVIDAflvpkfrydsIKKHFyqhagslpihgeASAKAALYRDRFLLLFQRvsrdqhfsrpsfdvvnsefgsceiSTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDlskakittgfftenTIVVAEGEMLVDGIFQVItcgfppledrDQSLKLLAgydffgggtlkkedTLRLADLEKRAANDMFVILSDiwldneevMGKLEVVLDGFESVEVVPSLFVFMgnfcshpcnlsfhsFSSLRLQFGKLGQmiaahprlkehsrflfipgpddagpstvlprcalpkYLTEELQKYipnaifssnpcrlNFLITVQLNH

msgqtrkkiqkkmkirgyglRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSlkssiidkesvnRVTSVLLQAEAAaegdsgsasnhsaIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFfgggtlkkedTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITVQLNH

MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPdaedeaidllldQFEHESSLKSSIIDKESVNRVTSVLLQaeaaaegdsgsasNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITVQLNH

*************KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQF*********************V*******************AIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITVQ***

*****RK*IQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQ**************************************SNHSAIRVIDAFLVPKFRYDSIKKHFYQHAG*****GEASAKAALYRDRFLLLFQRVSRDQHF******************TIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGT**************RAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITVQ***

************MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAE***********NHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITVQLNH

*SGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITVQLNH

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		418	2.2.26 [Sep-21-2011]
Q54Y85		676	DNA polymerase epsilon su	yes	no	0.930	0.575	0.325	1e-58
Q5ZKQ6		527	DNA polymerase epsilon su	yes	no	0.928	0.736	0.318	2e-55
A7YWS7		527	DNA polymerase epsilon su	yes	no	0.925	0.734	0.329	5e-55
O54956		527	DNA polymerase epsilon su	yes	no	0.928	0.736	0.325	4e-54
P56282		527	DNA polymerase epsilon su	yes	no	0.930	0.738	0.316	6e-54
O94263		594	DNA polymerase epsilon su	yes	no	0.760	0.535	0.333	2e-48
P0CN24		541	DNA polymerase epsilon su	yes	no	0.775	0.598	0.327	9e-46
P0CN25		541	DNA polymerase epsilon su	N/A	no	0.775	0.598	0.327	9e-46
Q6FSK8		719	DNA polymerase epsilon su	yes	no	0.755	0.439	0.279	5e-29
Q19196		534	Probable DNA polymerase e	yes	no	0.877	0.687	0.278	2e-28

>sp\|Q54Y85\|DPOE2_DICDI DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1	Back alignment and function desciption

 Score =  227 bits (579), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 222/415 (53%), Gaps = 26/415 (6%)

Query: 1   MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSI 60
           M  Q +K+I K   + G+ ++ DA+  I++ +        + ID LL   +    L++  
Sbjct: 1   MDIQWKKQITKSFSLTGFSIKADAMKCIINRIKNEGYDITQLIDNLLKNLDKSQYLQTI- 59

Query: 61  IDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAG-S 119
              E   ++   +         +S  A    A++VIDAF  P F +DS  K F +     
Sbjct: 60  ---EGCFKLIDTI---------NSSDAIEKEALKVIDAFNTPLFNFDSNSKQFIKSENFD 107

Query: 120 LPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSF--DVVNSEFGSCEISTIQSLVGQT 177
             +HG +++K+ LYR R+L + QR  R+ +FS P    D + +E+ +  I+ + SL+G T
Sbjct: 108 RSLHGSSNSKSDLYRKRYLKVLQRTERNDYFSTPVLASDKLKNEYQT--ITPLSSLLGNT 165

Query: 178 GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV 237
           GR+ V+G ISQ+E+  FY+EDL  +V+ID+SKAK   G  T N+I+ A GE  +DG+F  
Sbjct: 166 GRKHVLGTISQIEEDQFYIEDLNTNVKIDISKAKFEFGIVTINSIIQASGE-FIDGVFIA 224

Query: 238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNE 297
                PP E+R ++LK L   D FG    KK    +L   EK   ++  + LSD+WLD+E
Sbjct: 225 DKIQLPPTEERCETLKFLQNIDMFGERPQKKT-MEQLIKYEKEKEDNSILFLSDVWLDSE 283

Query: 298 EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357
            VM +L+ +  G++  +  P   + MGNF  HP  L   +   L+  F +L  +I  +P 
Sbjct: 284 RVMERLDYLFGGYK--DCPPFAMILMGNFTEHP--LINGTQYQLKKYFNQLAMVIQKYPN 339

Query: 358 LKEHSRFLFIPGPDDAGPS--TVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
           + + ++F+F+PGP D   S   +LP+  +     ++    IP + F++NPCR+ +
Sbjct: 340 IHQFTQFIFVPGPTDPTGSLLNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRY 394

Participates in DNA repair and in chromosomal DNA replication.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp\|Q5ZKQ6\|DPOE2_CHICK DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2 SV=1	Back alignment and function description

>sp\|A7YWS7\|DPOE2_BOVIN DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1	Back alignment and function description

>sp\|O54956\|DPOE2_MOUSE DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2	Back alignment and function description

>sp\|P56282\|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2	Back alignment and function description

>sp\|O94263\|DPB2_SCHPO DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1	Back alignment and function description

>sp\|P0CN24\|DPB2_CRYNJ DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPB2 PE=3 SV=1	Back alignment and function description

>sp\|P0CN25\|DPB2_CRYNB DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1	Back alignment and function description

>sp\|Q6FSK8\|DPB2_CANGA DNA polymerase epsilon subunit B OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DPB2 PE=3 SV=1	Back alignment and function description

>sp\|Q19196\|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2 OS=Caenorhabditis elegans GN=pole-2 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		418
225455720		527	PREDICTED: DNA polymerase epsilon subuni	0.978	0.776	0.778	0.0
297734108		527	unnamed protein product [Vitis vinifera]	0.978	0.776	0.763	0.0
255580392		536	DNA polymerase epsilon subunit B, putati	0.980	0.764	0.770	1e-180
356560075		525	PREDICTED: DNA polymerase epsilon subuni	0.966	0.769	0.745	1e-179
449507384		536	PREDICTED: DNA polymerase epsilon subuni	0.966	0.753	0.723	1e-175
224120420		518	predicted protein [Populus trichocarpa]	0.940	0.758	0.724	1e-173
145361161		526	DNA polymerase epsilon subunit B2 [Arabi	0.933	0.741	0.732	1e-166
62320640		526	DNA polymerase epsilon subunit B -like p	0.933	0.741	0.729	1e-165
297812329		526	hypothetical protein ARALYDRAFT_489063 [	0.933	0.741	0.732	1e-165
357148046		533	PREDICTED: DNA polymerase epsilon subuni	0.976	0.765	0.675	1e-157

>gi\|225455720\|ref\|XP_002267181.1\| PREDICTED: DNA polymerase epsilon subunit 2-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/410 (77%), Positives = 365/410 (89%), Gaps = 1/410 (0%)

Query: 1   MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSI 60
           M   TRKK+Q+K KIRGY L+++ALDEILSF++ F DAEDEAIDLLLD+ E+ES LKSSI
Sbjct: 1   MGAATRKKVQRKFKIRGYTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENES-LKSSI 59

Query: 61  IDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSL 120
           +DKESV+RV S+LL+AEAA E   G+ S  SA+R++DAFL+ KF YD IKK FY++ G L
Sbjct: 60  LDKESVHRVVSLLLEAEAAVEETPGAISTRSALRIVDAFLMSKFCYDPIKKIFYENTGRL 119

Query: 121 PIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRR 180
            IHG+ASAK+ALYR+RFLLLFQR+SRDQHFS+P+FD   S FGSCEIS IQSL+GQTG+R
Sbjct: 120 AIHGDASAKSALYRNRFLLLFQRLSRDQHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKR 179

Query: 181 WVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITC 240
           WVMGVISQLEDGHF+LEDL ASVEI+LS AKITTGFF+ENTI+VAEGEM +DGIFQV TC
Sbjct: 180 WVMGVISQLEDGHFFLEDLTASVEINLSNAKITTGFFSENTIIVAEGEMFLDGIFQVSTC 239

Query: 241 GFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVM 300
           GFPPLEDRD+SL  L+G DFFGGGTL +E+TLRLA LEK+A NDMFVILSD+WLDNEE M
Sbjct: 240 GFPPLEDRDESLASLSGLDFFGGGTLTREETLRLAGLEKKAVNDMFVILSDVWLDNEETM 299

Query: 301 GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360
           GKL  VLDG+E+VEVVPSLF+FMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA+HPRLKE
Sbjct: 300 GKLATVLDGYENVEVVPSLFIFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIASHPRLKE 359

Query: 361 HSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
           HS+FLFIPGPDDAGPSTVLPRCALP YLTEE +KYIPNAIFSSNPCR+ F
Sbjct: 360 HSQFLFIPGPDDAGPSTVLPRCALPNYLTEEFKKYIPNAIFSSNPCRIKF 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734108\|emb\|CBI15355.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255580392\|ref\|XP_002531023.1\| DNA polymerase epsilon subunit B, putative [Ricinus communis] gi\|223529398\|gb\|EEF31361.1\| DNA polymerase epsilon subunit B, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356560075\|ref\|XP_003548321.1\| PREDICTED: DNA polymerase epsilon subunit 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449507384\|ref\|XP_004163016.1\| PREDICTED: DNA polymerase epsilon subunit 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224120420\|ref\|XP_002318325.1\| predicted protein [Populus trichocarpa] gi\|222858998\|gb\|EEE96545.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|145361161\|ref\|NP_680197.2\| DNA polymerase epsilon subunit B2 [Arabidopsis thaliana] gi\|63147392\|gb\|AAY34169.1\| At5g22110 [Arabidopsis thaliana] gi\|332005601\|gb\|AED92984.1\| DNA polymerase epsilon subunit B2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|62320640\|dbj\|BAD95306.1\| DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297812329\|ref\|XP_002874048.1\| hypothetical protein ARALYDRAFT_489063 [Arabidopsis lyrata subsp. lyrata] gi\|297319885\|gb\|EFH50307.1\| hypothetical protein ARALYDRAFT_489063 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357148046\|ref\|XP_003574603.1\| PREDICTED: DNA polymerase epsilon subunit 2-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		418
TAIR\|locus:504956460		526	DPB2 "DNA polymerase epsilon s	0.968	0.769	0.696	2.4e-147
DICTYBASE\|DDB_G0278367		676	DDB_G0278367 "putative DNA pol	0.928	0.573	0.319	1.9e-53
ZFIN\|ZDB-GENE-020419-16		527	pole2 "polymerase (DNA directe	0.942	0.747	0.312	7.2e-52
RGD\|1311962		527	Pole2 "polymerase (DNA directe	0.851	0.675	0.329	5.8e-50
UNIPROTKB\|Q5ZKQ6		527	POLE2 "DNA polymerase epsilon	0.751	0.595	0.351	7.4e-50
UNIPROTKB\|A7YWS7		527	POLE2 "DNA polymerase epsilon	0.928	0.736	0.311	1.2e-49
UNIPROTKB\|F1MKI8		527	POLE2 "DNA polymerase epsilon	0.928	0.736	0.311	1.5e-49
UNIPROTKB\|E2RCT9		527	DNAAF2 "Uncharacterized protei	0.935	0.741	0.308	2.5e-49
UNIPROTKB\|J9PBE8		547	DNAAF2 "Uncharacterized protei	0.935	0.714	0.308	2.5e-49
UNIPROTKB\|F1SHZ5		527	POLE2 "Uncharacterized protein	0.937	0.743	0.309	2.5e-49

TAIR\|locus:504956460 DPB2 "DNA polymerase epsilon subunit B2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
 Identities = 285/409 (69%), Positives = 326/409 (79%)

Query:     2 SGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPXXXXXXXXXXXXQFEHESSLKSSII 61
             + Q RKKIQKK K RGY L+ DALDEIL F ++FP                E+  KSS +
Sbjct:     4 TSQKRKKIQKKFKNRGYNLKFDALDEILVFADQFPDDDDGEAIDLLLDNLQETH-KSSTV 62

Query:    62 DKESVNRVTSVLLQXXXXXXXXXXXXXNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLP 121
             D ESV  + + LL                S++ +IDAFLVPKF YDS+KK F +H  SLP
Sbjct:    63 DAESVRGLINRLLGAHNAPEEPTTSA---SSLAIIDAFLVPKFGYDSVKKKFNEHTSSLP 119

Query:   122 IHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRW 181
             IHGEASAK ALYR+RF+LL QRVSR +HFSRP+FD   S+F + EIS+IQSL+ Q GR+W
Sbjct:   120 IHGEASAKTALYRERFMLLSQRVSRAEHFSRPAFDAEMSQFENNEISSIQSLISQRGRKW 179

Query:   182 VMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241
             VMGVISQLEDGHFYLEDL+ASVEIDLSKAKITTGFFTENTI++AEGEM V+GIFQVITCG
Sbjct:   180 VMGVISQLEDGHFYLEDLSASVEIDLSKAKITTGFFTENTIILAEGEMQVNGIFQVITCG 239

Query:   242 FPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMG 301
             FPPLEDRD++LK  + YDFFGGGTL KE+ ++LADLE++A ND FVILSDIWLD+EEVM 
Sbjct:   240 FPPLEDRDKTLKAHSEYDFFGGGTLTKEEMIKLADLERQAVNDTFVILSDIWLDDEEVMR 299

Query:   302 KLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361
             KLE VLDGFESVE VPSLFVFMGNFCS PCNLSF S+SSLR QFGKLG+MI  HPRLKE+
Sbjct:   300 KLETVLDGFESVETVPSLFVFMGNFCSRPCNLSFGSYSSLREQFGKLGRMIGNHPRLKEN 359

Query:   362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
             SRFLFIPGP+DAGPSTVLPRCALPKYLTEEL+  IPNAIFSSNPCR+ F
Sbjct:   360 SRFLFIPGPEDAGPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKF 408

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0008622 "epsilon DNA polymerase complex" evidence=IPI

DICTYBASE\|DDB_G0278367 DDB_G0278367 "putative DNA polymerase epsilon subunit B" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020419-16 pole2 "polymerase (DNA directed), epsilon 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1311962 Pole2 "polymerase (DNA directed), epsilon 2, accessory subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZKQ6 POLE2 "DNA polymerase epsilon subunit 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YWS7 POLE2 "DNA polymerase epsilon subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MKI8 POLE2 "DNA polymerase epsilon subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCT9 DNAAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9PBE8 DNAAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHZ5 POLE2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	LOW CONFIDENCE prediction!
4th Layer	2.7.7.7	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		418
pfam04042		189	pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsil	6e-23
PTZ00235		291	PTZ00235, PTZ00235, DNA polymerase epsilon subunit	7e-06

>gnl\|CDD\|217857 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit B	Back alignment and domain information

 Score = 95.1 bits (237), Expect = 6e-23
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 302 KLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361
            L  +LDG+      P   +  G F S P NL   S  +L   F  L  +     +L   
Sbjct: 2   LLRDLLDGY--NAAPPDRLILAGPFLSAPHNLIASSKVNLTYDFLFLKLLDGILEQLLSS 59

Query: 362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRL 408
           +  + +PGP+D   STVLP+   P+ L  + +KY  +  F +NPCR 
Sbjct: 60  TPVILVPGPNDPTNSTVLPQPPFPRCLFPKSKKYN-SLQFVTNPCRF 105

This family contains a number of DNA polymerase subunits. The B subunit of the DNA polymerase alpha plays an essential role at the initial stage of DNA replication in S. cerevisiae and is phosphorylated in a cell cycle-dependent manner. DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure. Length = 189

>gnl\|CDD\|185521 PTZ00235, PTZ00235, DNA polymerase epsilon subunit B; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		418
KOG3818		525	consensus DNA polymerase epsilon, subunit B [Repli	100.0
PRK04036		504	DNA polymerase II small subunit; Validated	100.0
PTZ00235		291	DNA polymerase epsilon subunit B; Provisional	100.0
COG1311		481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	99.94
KOG2732		435	consensus DNA polymerase delta, regulatory subunit	99.87
PF04042		209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	99.84
cd07387		257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	99.71
KOG1625		600	consensus DNA polymerase alpha-primase complex, po	99.69
PF12213		73	Dpoe2NT: DNA polymerases epsilon N terminal; Inter	99.51
cd07386		243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	99.51
COG5214		581	POL12 DNA polymerase alpha-primase complex, polyme	99.0
PHA02546		340	47 endonuclease subunit; Provisional	98.01
cd07402		240	MPP_GpdQ Enterobacter aerogenes GpdQ and related p	97.86
cd08165		156	MPP_MPPE1 human MPPE1 and related proteins, metall	97.64
PRK11148		275	cyclic 3',5'-adenosine monophosphate phosphodieste	97.55
cd07400		144	MPP_YydB Bacillus subtilis YydB and related protei	97.54
cd07398		217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	97.51
cd00840		223	MPP_Mre11_N Mre11 nuclease, N-terminal metallophos	97.45
cd07396		267	MPP_Nbla03831 Homo sapiens Nbla03831 and related p	97.45
PRK05340		241	UDP-2,3-diacylglucosamine hydrolase; Provisional	97.44
cd07385		223	MPP_YkuE_C Bacillus subtilis YkuE and related prot	97.37
cd07391		172	MPP_PF1019 Pyrococcus furiosus PF1019 and related	97.32
cd07395		262	MPP_CSTP1 Homo sapiens CSTP1 and related proteins,	97.29
cd04490		79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	97.23
TIGR00619		253	sbcd exonuclease SbcD. This family is based on the	97.22
PRK11340		271	phosphodiesterase YaeI; Provisional	97.19
TIGR01854		231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	97.11
PF00149		200	Metallophos: Calcineurin-like phosphoesterase; Int	97.11
PRK10966		407	exonuclease subunit SbcD; Provisional	97.09
COG0420		390	SbcD DNA repair exonuclease [DNA replication, reco	97.09
COG2908		237	Uncharacterized protein conserved in bacteria [Fun	97.08
cd07383		199	MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase	97.06
COG1409		301	Icc Predicted phosphohydrolases [General function	97.04
cd07384		171	MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re	97.03
PRK09453		182	phosphodiesterase; Provisional	97.01
cd07388		224	MPP_Tt1561 Thermus thermophilus Tt1561 and related	96.96
TIGR03729		239	acc_ester putative phosphoesterase. Members of thi	96.9
cd07401		256	MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal	96.9
cd07399		214	MPP_YvnB Bacillus subtilis YvnB and related protei	96.86
TIGR00024		225	SbcD_rel_arch putative phosphoesterase, SbcD/Mre11	96.85
TIGR00583		405	mre11 DNA repair protein (mre11). All proteins in	96.77
cd08166		195	MPP_Cdc1_like_1 uncharacterized subgroup related t	96.76
cd07392		188	MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel	96.76
COG1407		235	Predicted ICC-like phosphoesterases [General funct	96.68
cd07379		135	MPP_239FB Homo sapiens 239FB and related proteins,	96.6
cd07393		232	MPP_DR1119 Deinococcus radiodurans DR1119 and rela	96.59
cd07390		168	MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro	96.54
PF12850		156	Metallophos_2: Calcineurin-like phosphoesterase su	96.34
cd00841		155	MPP_YfcE Escherichia coli YfcE and related protein	96.23
cd07404		166	MPP_MS158 Microscilla MS158 and related proteins,	95.97
cd08164		193	MPP_Ted1 Saccharomyces cerevisiae Ted1 and related	95.66
PHA02239		235	putative protein phosphatase	95.64
PF14582		255	Metallophos_3: Metallophosphoesterase, calcineurin	95.52
cd00838		131	MPP_superfamily metallophosphatase superfamily, me	95.45
PRK13254		148	cytochrome c-type biogenesis protein CcmE; Reviewe	95.44
TIGR00040		158	yfcE phosphoesterase, MJ0936 family. Members of th	95.34
PF03100		131	CcmE: CcmE; InterPro: IPR004329 CcmE is the produc	95.32
cd00839		294	MPP_PAPs purple acid phosphatases of the metalloph	95.24
COG4186		186	Predicted phosphoesterase or phosphohydrolase [Gen	94.83
cd08163		257	MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related	94.68
COG2129		226	Predicted phosphoesterases, related to the Icc pro	94.67
cd07394		178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	94.66
cd07424		207	MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do	94.01
cd07425		208	MPP_Shelphs Shewanella-like phosphatases, metallop	93.77
cd07378		277	MPP_ACP5 Homo sapiens acid phosphatase 5 and relat	93.5
cd07397		238	MPP_DevT Myxococcus xanthus DevT and related prote	93.42
PRK13150		159	cytochrome c-type biogenesis protein CcmE; Reviewe	93.28
COG1408		284	Predicted phosphohydrolases [General function pred	93.14
PF01336		75	tRNA_anti-codon: OB-fold nucleic acid binding doma	92.74
PRK13165		160	cytochrome c-type biogenesis protein CcmE; Reviewe	92.36
cd07421		304	MPP_Rhilphs Rhilph phosphatases, metallophosphatas	92.27
PRK13159		155	cytochrome c-type biogenesis protein CcmE; Reviewe	92.23
COG2332		153	CcmE Cytochrome c-type biogenesis protein CcmE [Po	92.15
PRK11439		218	pphA serine/threonine protein phosphatase 1; Provi	92.05
PRK00166		275	apaH diadenosine tetraphosphatase; Reviewed	92.03
cd07413		222	MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat	91.61
cd07422		257	MPP_ApaH Escherichia coli ApaH and related protein	91.33
cd00144		225	MPP_PPP_family phosphoprotein phosphatases of the	90.95
cd07423		234	MPP_PrpE Bacillus subtilis PrpE and related protei	90.93
PF04076		103	BOF: Bacterial OB fold (BOF) protein; InterPro: IP	90.37
PRK09968		218	serine/threonine-specific protein phosphatase 2; P	90.32
KOG3662		410	consensus Cell division control protein/predicted	90.3
cd04489		78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	89.85
cd00844		262	MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t	88.52
PLN02533		427	probable purple acid phosphatase	88.06
PRK05907		311	hypothetical protein; Provisional	87.91
cd04478		95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	87.8
PRK13625		245	bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision	87.68
cd00842		296	MPP_ASMase acid sphingomyelinase and related prote	86.92
PRK08487		328	DNA polymerase III subunit delta; Validated	86.73
PRK07914		320	hypothetical protein; Reviewed	86.71
TIGR00156		126	conserved hypothetical protein TIGR00156. As of th	86.63
PRK05629		318	hypothetical protein; Validated	85.94
PRK06920		1107	dnaE DNA polymerase III DnaE; Reviewed	85.0
COG0622		172	Predicted phosphoesterase [General function predic	84.73
PRK10053		130	hypothetical protein; Provisional	84.46
COG3111		128	Periplasmic protein with OB-fold [Function unknown	84.26
cd07403		129	MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel	84.13
PRK07452		326	DNA polymerase III subunit delta; Validated	84.07
PRK05574		340	holA DNA polymerase III subunit delta; Reviewed	83.98
smart00156		271	PP2Ac Protein phosphatase 2A homologues, catalytic	83.78
cd04485		84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	83.76
TIGR00668		279	apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric	83.26
cd07416		305	MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca	83.17
cd04488		75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	82.41
cd00845		252	MPP_UshA_N_like Escherichia coli UshA-like family,	81.96
PRK05673		1135	dnaE DNA polymerase III subunit alpha; Validated	81.64
PRK06585		343	holA DNA polymerase III subunit delta; Reviewed	81.6
cd07419		311	MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a	81.56
cd07420		321	MPP_RdgC Drosophila melanogaster RdgC and related	81.24
PRK07373		449	DNA polymerase III subunit alpha; Reviewed	81.23
cd07415		285	MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein	81.12
cd07414		293	MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme	81.1
cd04483		92	hOBFC1_like hOBFC1_like: A subfamily of OB folds s	80.23

>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=1e-95  Score=719.27  Aligned_cols=398  Identities=28%  Similarity=0.542  Sum_probs=369.4

Q ss_pred             hHHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChH-HHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHhhhhc
Q 014802            3 GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAED-EAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAE   81 (418)
Q Consensus         3 ~~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~-~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~~~~~~~~~   81 (418)
                      +.+|+.+...||+.|.+++++|..+|+++.......++ +|++++++.|+++ ++.+..+.++.+++++++|+..     
T Consensus         6 ~~L~~~as~~fk~~G~l~R~~~ik~L~e~~~~~~~~er~~~i~~i~e~iq~q-~l~s~~~~r~~~~~avq~~~~s-----   79 (525)
T KOG3818|consen    6 DRLRELASFVFKLCGHLWRSEAIKLLVELALDWKKEERKKWINKIIELIQKQ-KLNSPHEEREAIEAAVQECSSS-----   79 (525)
T ss_pred             HHHHHHHHHHHhhhhHHHHHhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhh-ccCCchhhHHHHHHHHHHhhhc-----
Confidence            48999999999999999999999999998887655554 6999999999999 9999999999999999999863     


Q ss_pred             cCCCCCCCCCceEEecCCccCceeeecccccccc-cCCCCCccCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc-
Q 014802           82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQ-HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVN-  159 (418)
Q Consensus        82 ~~~~~~~~~~~~~Vi~af~~P~~~yd~~~k~f~~-~~~~~~~~~~~~~k~~~fr~Ry~~l~qrl~R~~~F~~~~~~~~~-  159 (418)
                         +..+|+++|+|||||++|||.||+.+|+|+- ...++++++++++|++|||+||.+++||++||+.|++|..+.+. 
T Consensus        80 ---g~~~~e~~F~vidAf~~prF~Yn~~~kkFvl~~k~~~~l~~~~~~ks~m~~~Ry~i~~qR~mR~e~Fq~pv~~s~~~  156 (525)
T KOG3818|consen   80 ---GTQDAEKYFNVIDAFSLPRFDYNSDRKKFVLPNKPKPSLLADPSDKSDMFRQRYFIVKQRTMRNELFQPPVSGSGRC  156 (525)
T ss_pred             ---ccccHHHHHhhcchhcCCccccCchheEEEecCCCCccccCChHHHHHHHHHHHHHHHHHHHhhhccCCCccCCchh
Confidence               4568899999999999999999999999974 55567999999999999999999999999999999998765544 


Q ss_pred             CCCCcccceeccccc-CCCCcEE-EEEEEEEccCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEE
Q 014802          160 SEFGSCEISTIQSLV-GQTGRRW-VMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV  237 (418)
Q Consensus       160 ~~~~~~~it~I~~Ll-g~~g~~~-vlGml~~~~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V  237 (418)
                      .+.++++||||++|+ |+.++.+ |+|||+|..+|+|+|||+||.|+||++++.++.|+|||||+|+|||.| .+|+|+|
T Consensus       157 ~q~~~fklt~ienLL~t~~~~~~lvLGlLTq~k~G~~~lEDpsgsVqlDlsqa~fh~glf~egC~VL~EG~f-~~~vf~V  235 (525)
T KOG3818|consen  157 AQLKKFKLTPIENLLSTRALQSFLVLGLLTQLKEGKFHLEDPSGSVQLDLSQAKFHHGLFCEGCFVLVEGTF-ESGVFHV  235 (525)
T ss_pred             hhccccceeEHHHhhccccccceeeeehhhhccCCcEEEeCCCCcEEEeecccccccceeccceEEEEeeee-ecceEEE
Confidence            456679999999999 6777665 899999999999999999999999999999999999999999999999 6799999


Q ss_pred             EEecCCCCCCchhhhhhccCcccCCCCCC-chhhhHHHHHHHHhcCCCcEEEEEccccCcHHHHHHHHHHHhcccCCCCC
Q 014802          238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTL-KKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVV  316 (418)
Q Consensus       238 ~~i~~Pp~e~r~~s~~~~~~ld~~G~~~~-~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~  316 (418)
                      +++|+||.|+|+.|++.+||+|+||+++. +.+...+|+.+|++++|.++||+||||||++++|++|+++|+||+++  +
T Consensus       236 ~~lg~PP~E~~~~tr~~~gN~n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~--p  313 (525)
T KOG3818|consen  236 NELGFPPVERREVTRKELGNLNWLGGDSKIAFKCSARLRSLEAENTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDA--P  313 (525)
T ss_pred             eeccCCCCCcchhHHHHhccCcccCCcchhhhHHHHHHHHHHHhCcCceEEEEehhccccHHHHHHHHHHHhhccCC--C
Confidence            99999999999999999999999999865 55788999999999999999999999999999999999999999975  8


Q ss_pred             CeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhC
Q 014802          317 PSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYI  396 (418)
Q Consensus       317 p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~  396 (418)
                      |.+||+||+|+|.|...  ++...|+++|+.||..|+.++.+.++++|||||||+|||.+++|||||||++|++++.+.+
T Consensus       314 P~~iIlcG~FtS~p~~~--~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~~iLPr~piP~~~~~~i~kv~  391 (525)
T KOG3818|consen  314 PTAIILCGSFTSSPRQT--SSSDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVDNILPRPPIPSLFTKHISKVC  391 (525)
T ss_pred             CeEEEEecccccccccc--chHHHHHHHHHHHHhhccccccccccceEEEecCCCCCCcCccCCCCCchHHHHHHHHhhc
Confidence            99999999999999764  3678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEecCCcEEEEcccc
Q 014802          397 PNAIFSSNPCRLNFLITV  414 (418)
Q Consensus       397 ~~~~~~sNP~ri~~~~~~  414 (418)
                      |+++|+||||||+||||.
T Consensus       392 ~~tvfasNPcRIqy~sQE  409 (525)
T KOG3818|consen  392 KNTVFASNPCRIQYCSQE  409 (525)
T ss_pred             CCceeccCCeeeEeecce
Confidence            999999999999999993

>PRK04036 DNA polymerase II small subunit; Validated	Back alignment and domain information

>PTZ00235 DNA polymerase epsilon subunit B; Provisional	Back alignment and domain information

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair]	Back alignment and domain information

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast	Back alignment and domain information

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain	Back alignment and domain information

>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]	Back alignment and domain information

>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins	Back alignment and domain information

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain	Back alignment and domain information

>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02546 47 endonuclease subunit; Provisional	Back alignment and domain information

>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	Back alignment and domain information

>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional	Back alignment and domain information

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	Back alignment and domain information

>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional	Back alignment and domain information

>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	Back alignment and domain information

>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit	Back alignment and domain information

>TIGR00619 sbcd exonuclease SbcD	Back alignment and domain information

>PRK11340 phosphodiesterase YaeI; Provisional	Back alignment and domain information

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase	Back alignment and domain information

>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11	Back alignment and domain information

>PRK10966 exonuclease subunit SbcD; Provisional	Back alignment and domain information

>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	Back alignment and domain information

>COG1409 Icc Predicted phosphohydrolases [General function prediction only]	Back alignment and domain information

>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK09453 phosphodiesterase; Provisional	Back alignment and domain information

>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain	Back alignment and domain information

>TIGR03729 acc_ester putative phosphoesterase	Back alignment and domain information

>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain	Back alignment and domain information

>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related	Back alignment and domain information

>TIGR00583 mre11 DNA repair protein (mre11)	Back alignment and domain information

>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain	Back alignment and domain information

>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]	Back alignment and domain information

>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain	Back alignment and domain information

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []	Back alignment and domain information

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain	Back alignment and domain information

>PHA02239 putative protein phosphatase	Back alignment and domain information

>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A	Back alignment and domain information

>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>TIGR00040 yfcE phosphoesterase, MJ0936 family	Back alignment and domain information

>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria	Back alignment and domain information

>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]	Back alignment and domain information

>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]	Back alignment and domain information

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain	Back alignment and domain information

>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain	Back alignment and domain information

>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>COG1408 Predicted phosphohydrolases [General function prediction only]	Back alignment and domain information

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands	Back alignment and domain information

>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain	Back alignment and domain information

>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional	Back alignment and domain information

>PRK00166 apaH diadenosine tetraphosphatase; Reviewed	Back alignment and domain information

>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain	Back alignment and domain information

>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain	Back alignment and domain information

>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif)	Back alignment and domain information

>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional	Back alignment and domain information

>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]	Back alignment and domain information

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit	Back alignment and domain information

>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain	Back alignment and domain information

>PLN02533 probable purple acid phosphatase	Back alignment and domain information

>PRK05907 hypothetical protein; Provisional	Back alignment and domain information

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional	Back alignment and domain information

>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK08487 DNA polymerase III subunit delta; Validated	Back alignment and domain information

>PRK07914 hypothetical protein; Reviewed	Back alignment and domain information

>TIGR00156 conserved hypothetical protein TIGR00156	Back alignment and domain information

>PRK05629 hypothetical protein; Validated	Back alignment and domain information

>PRK06920 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>COG0622 Predicted phosphoesterase [General function prediction only]	Back alignment and domain information

>PRK10053 hypothetical protein; Provisional	Back alignment and domain information

>COG3111 Periplasmic protein with OB-fold [Function unknown]	Back alignment and domain information

>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK07452 DNA polymerase III subunit delta; Validated	Back alignment and domain information

>PRK05574 holA DNA polymerase III subunit delta; Reviewed	Back alignment and domain information

>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain	Back alignment and domain information

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)	Back alignment and domain information

>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	Back alignment and domain information

>cd07416 MPP_PP2B PP2B, metallophosphatase domain	Back alignment and domain information

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG	Back alignment and domain information

>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain	Back alignment and domain information

>PRK05673 dnaE DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>PRK06585 holA DNA polymerase III subunit delta; Reviewed	Back alignment and domain information

>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain	Back alignment and domain information

>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK07373 DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain	Back alignment and domain information

>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain	Back alignment and domain information

>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		418
2v6z_M		99	DNA polymerase epsilon subunit 2; DNA replication,	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	1e-04

>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens} Length = 99	Back alignment and structure

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 6  RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKE 64
          R +     K+RG  LR +A+  +   +    + E ++ ++ +++  E +  L S++I++ 
Sbjct: 31 RSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQ-PLSSNMIERS 89

Query: 65 SVNRV 69
           V   
Sbjct: 90 VVEAA 94

PyMOL of 2v6z

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 460	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		418
3e0j_A		476	DNA polymerase subunit delta-2; DNA polymerase del	99.97
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	99.88
2v6z_M		99	DNA polymerase epsilon subunit 2; DNA replication,	99.49
3d03_A		274	Phosphohydrolase; glycerophosphodiesterase, metall	97.65
3ib7_A		330	ICC protein; metallophosphoesterase, alpha-beta fo	97.54
1uf3_A		228	Hypothetical protein TT1561; metallo-dependent pho	97.52
4fbk_A		472	DNA repair and telomere maintenance protein NBS1,	97.36
4fbw_A		417	DNA repair protein RAD32; DNA double-strand break	97.32
1ii7_A		333	MRE11 nuclease; RAD50, DNA double-strand break rep	97.3
2q8u_A		336	Exonuclease, putative; structural genomics, joint	97.24
3av0_A		386	DNA double-strand break repair protein MRE11; DNA	97.22
3t1i_A		431	Double-strand break repair protein MRE11A; DNA rep	97.2
3tho_B		379	Exonuclease, putative; adenosine triphosphate, bac	97.18
2yvt_A		260	Hypothetical protein AQ_1956; structural genomics,	97.17
2nxf_A		322	Putative dimetal phosphatase; dinuclear metal cent	97.09
1xm7_A		195	Hypothetical protein AQ_1665; structural genomics,	97.03
2xmo_A		443	LMO2642 protein; phosphodiesterase, hydrolase; 1.7	96.84
1su1_A		208	Hypothetical protein YFCE; structural genomics, ph	96.53
2a22_A		215	Vacuolar protein sorting 29; alpha-beta-BETA-alpha	96.31
1s3l_A		190	Hypothetical protein MJ0936; phosphodiesterase, nu	96.26
1z2w_A		192	Vacuolar protein sorting 29; VPS29, retromer, phos	96.2
1nnw_A		252	Hypothetical protein; structural genomics, PSI, pr	96.08
1ute_A		313	Protein (II purple acid phosphatase); tartrate res	95.71
3rl5_A		296	Metallophosphoesterase mpped2; alpha-beta fold, me	95.53
3qfm_A		270	SAPH, putative uncharacterized protein; sandwich f	95.41
2kkn_A		178	Uncharacterized protein; protein phosphatase 2A ho	95.38
1sr3_A		136	APO-CCME; OB fold, beta barrel, flexible C-termina	95.21
3rqz_A		246	Metallophosphoesterase; PSI-biology, midwest cente	94.57
1j6q_A		136	Cytochrome C maturation protein E; all-beta protei	94.57
2kct_A		94	Cytochrome C-type biogenesis protein CCME; solutio	94.25
2qjc_A		262	Diadenosine tetraphosphatase, putative; putative d	94.14
2ie4_C		309	PP2A-alpha;, serine/threonine-protein phosphatase	94.12
1g5b_A		221	Serine/threonine protein phosphatase; bacteriophag	93.97
3ck2_A		176	Conserved uncharacterized protein (predicted phosp	93.86
2dfj_A		280	Diadenosinetetraphosphatase; helices and strands m	92.67
1fjm_A		330	Protein serine/threonine phosphatase-1 (alpha ISO	92.31
2k50_A		115	Replication factor A related protein; uncharacteri	91.4
1wao_1		477	Serine/threonine protein phosphatase 5; hydrolase,	91.23
1nnx_A		109	Protein YGIW; structural genomics, hypothetical pr	91.07
2z72_A		342	Protein-tyrosine-phosphatase; cold-active enzyme,	90.82
1xzw_A		426	Purple acid phosphatase; hydrolase; HET: NAG FUC M	90.15
3tgh_A		342	Glideosome-associated protein 50; phosphatase fold	90.02
2qfp_A		424	Purple acid phosphatase; binuclear, Fe-Zn, hydrola	89.9
3e7a_A		299	PP-1A, serine/threonine-protein phosphatase PP1-al	89.58
3dm3_A		105	Replication factor A; probably plays AN essential	89.07
4gop_B		136	Putative uncharacterized protein; OB fold, ssDNA b	88.6
3h63_A		315	Serine/threonine-protein phosphatase 5; metalloenz	88.58
3icf_A		335	PPT, serine/threonine-protein phosphatase T; IRO m	88.24
2k75_A		106	Uncharacterized protein TA0387; closed beta barrel	88.14
1aui_A		521	Calcineurin, serine/threonine phosphatase 2B; hydr	86.65
3e0e_A		97	Replication protein A; structural genomics, PSI-2,	86.35
1o7i_A		119	SSB, SSO2364, single stranded DNA binding protein;	86.31
3ll8_A		357	Serine/threonine-protein phosphatase 2B catalytic	86.18
3kdf_D		132	Replication protein A 32 kDa subunit; wheat GERM c	86.09
3mxn_B		150	RECQ-mediated genome instability protein 2; bloom	84.53
2kbn_A		109	Conserved protein; nucleic acid binding protein, b	83.4

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}	Back alignment and structure

Probab=99.97  E-value=4e-30  Score=264.39  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=181.3

Q ss_pred             eeeecccccccccCCCCCccCChhHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCCCCcccceecccccC-CCCc-EE
Q 014802          104 FRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVG-QTGR-RW  181 (418)
Q Consensus       104 ~~yd~~~k~f~~~~~~~~~~~~~~~k~~~fr~Ry~~l~qrl~R~~~F~~~~~~~~~~~~~~~~it~I~~Llg-~~g~-~~  181 (418)
                      ..|.+..+.|....     -.=...+.++|+.|+..||.++.++..      ..+.      ...+|..|+. +.|+ .+
T Consensus        37 ~~y~~~~~~F~l~~-----~~y~~QY~~iY~~RL~~Lr~~l~~~a~------~kw~------~~~~i~klldl~~ge~c~   99 (476)
T 3e0j_A           37 ATYTNSSQPFRLGE-----RSFSRQYAHIYATRLIQMRPFLENRAQ------QHWG------SGVGVKKLCELQPEEKCC   99 (476)
T ss_dssp             TCEEECCGGGCC-----------------CHHHHHHHHHHHHHHHH------HHSC------SCCCBCCSSSCCTTCCEE
T ss_pred             ccccccccccccCC-----CChhHHHHHHHHHHHHHHHHHHHHHHH------HhcC------CCccchHhhcccCCCEEE
Confidence            67777666775321     112367899999999999999977542      0000      0133444433 2344 67


Q ss_pred             EEEEEEEc----------------------------cCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCC
Q 014802          182 VMGVISQL----------------------------EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDG  233 (418)
Q Consensus       182 vlGml~~~----------------------------~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G  233 (418)
                      |+|+|.+.                            .++.++|||++|||+|..   ......+++|+||+|.|.+..+|
T Consensus       100 viGTvyk~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDesGRv~L~g---~~~~~~lVTG~VvaV~G~~~~~G  176 (476)
T 3e0j_A          100 VVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKG---TIDVSKLVTGTVLAVFGSVRDDG  176 (476)
T ss_dssp             EEEEEEEEC----------------------CCCCCSSCEEEEECSSCEEEEEE---SCCTTTCCTTCEEEEEEEECTTS
T ss_pred             EEEEEEecccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECCCCEEEEEE---EcccccccCCcEEEEEEEEcCCC
Confidence            99999852                            246799999999999987   23456789999999999998999


Q ss_pred             eEEEEEecCCCCCCchhhhhhccCcccCCCCCCchhhhHHHHHHHHhcCCCcEEEEEccccCcHHH--HHHHHHHHhccc
Q 014802          234 IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEV--MGKLEVVLDGFE  311 (418)
Q Consensus       234 ~F~V~~i~~Pp~e~r~~s~~~~~~ld~~G~~~~~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~~~--l~~L~~l~~~~~  311 (418)
                      .|+|.+|++|.+++... +.                         ....+.+++|+||+|+++..+  ..+|+.|.+|+.
T Consensus       177 ~F~V~di~~Pd~ppq~~-~~-------------------------~~~~~~~ialVSGL~igs~~~~~~~~~~ll~d~L~  230 (476)
T 3e0j_A          177 KFLVEDYCFADLAPQKP-AP-------------------------PLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVT  230 (476)
T ss_dssp             SEEEEEEEECBCCCCCC-CC-------------------------CCSSCCEEEEECCCCBTSSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEcCCCCCCCC-CC-------------------------cCCCCCEEEEECCcccCCCcccchHHHHHHHHHHc
Confidence            99999999999876321 00                         012567999999999999853  456666666554


Q ss_pred             CC---------CCCCeEEEEEcCCCCCCCCCCCc----ch------HHHHHHHHHHHHHHhcCCCccccceEEEecCCCC
Q 014802          312 SV---------EVVPSLFVFMGNFCSHPCNLSFH----SF------SSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDD  372 (418)
Q Consensus       312 ~~---------~~~p~~~Vl~Gnf~s~~~~~~~~----~~------~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~D  372 (418)
                      +.         -....++||+||.+++.......    .+      ....++++.|+++|++   |+.++++++|||+||
T Consensus       231 G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~ld~~L~~---l~~~i~V~lmPG~~D  307 (476)
T 3e0j_A          231 GQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQ---LSASVPVDVMPGEFD  307 (476)
T ss_dssp             TCSSCHHHHHHHTTEEEEEEESCSBCC-------------CHHHHHHHHHHHHHHHHHHHHH---HHTTSCEEEECCTTS
T ss_pred             CCCCCccccchhhceeEEEEECCccccccccchhhhhhhccccccchhhHHHHHHHHHHHHh---cccCceEEecCCCCC
Confidence            21         02468999999999986321100    01      1234688899999996   667899999999999


Q ss_pred             CCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802          373 AGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT  413 (418)
Q Consensus       373 p~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~  413 (418)
                      |++ .+|||||||+++++..+ .+.++.++|||+.+++.+.
T Consensus       308 P~~-~~lPQqplh~~lfp~s~-~~~~~~~vtNP~~~~i~G~  346 (476)
T 3e0j_A          308 PTN-YTLPQQPLHPCMFPLAT-AYSTLQLVTNPYQATIDGV  346 (476)
T ss_dssp             SSC-SSSSCCCCCTTSCHHHH-TSTTEEECCSSEEEEETTE
T ss_pred             ccc-ccCCCCCcCHHHhhhhh-hcCccEEeCCCeEEEECCE
Confidence            998 99999999999999875 5689999999999998875

PyMOL of 3e0j

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}	Back alignment and structure

>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A	Back alignment and structure

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A	Back alignment and structure

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6	Back alignment and structure

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*	Back alignment and structure

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*	Back alignment and structure

>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A	Back alignment and structure

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A	Back alignment and structure

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*	Back alignment and structure

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}	Back alignment and structure

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C	Back alignment and structure

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6	Back alignment and structure

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12	Back alignment and structure

>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8	Back alignment and structure

>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}	Back alignment and structure

>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7	Back alignment and structure

>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7	Back alignment and structure

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A	Back alignment and structure

>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A	Back alignment and structure

>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A	Back alignment and structure

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*	Back alignment and structure

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*	Back alignment and structure

>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*	Back alignment and structure

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}	Back alignment and structure

>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1	Back alignment and structure

>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0	Back alignment and structure

>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A	Back alignment and structure

>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}	Back alignment and structure

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}	Back alignment and structure

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*	Back alignment and structure

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3	Back alignment and structure

>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7	Back alignment and structure

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}	Back alignment and structure

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3	Back alignment and structure

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}	Back alignment and structure

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3	Back alignment and structure

>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1	Back alignment and structure

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A	Back alignment and structure

>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1	Back alignment and structure

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}	Back alignment and structure

>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*	Back alignment and structure

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*	Back alignment and structure

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}	Back alignment and structure

>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A	Back alignment and structure

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}	Back alignment and structure

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3	Back alignment and structure

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A	Back alignment and structure

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3	Back alignment and structure

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A	Back alignment and structure

>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B	Back alignment and structure

>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B	Back alignment and structure

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		418
d2hy1a1		256	Rv0805 cyclic nucleotide phosphodiesterase {Mycoba	97.8
d1ii7a_		333	Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.72
d3d03a1		271	Glycerophosphodiesterase GpdQ {Enterobacter aeroge	97.64
d2yvta1		257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	97.6
d1uf3a_		228	Hypothetical protein TT1561 {Thermus thermophilus	97.46
d1xm7a_		188	Hypothetical protein aq_1666 {Aquifex aeolicus [Ta	97.14
d1nnwa_		251	Hypothetical protein PF1291 {Archaeon Pyrococcus f	96.88
d1su1a_		184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	96.62
d2nxfa1		320	Uncharacterized C17orf48 homolog zgc:64213 {Zebraf	96.6
d1sr3a_		114	Heme chaperone CcmE {Escherichia coli [TaxId: 562]	95.06
d1j6qa_		100	Heme chaperone CcmE {Shewanella putrefaciens [TaxI	94.61
d1z2wa1		182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	94.32
d1s3la_		165	Putative phosphodiesterase MJ0936 {Methanococcus j	93.98
d2a22a1		193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	93.95
d1g5ba_		219	lambda ser/thr protein phosphatase {Bacteriophage	92.78
d1nnxa_		106	Hypothetical protein YgiW {Escherichia coli [TaxId	92.54
d3ck2a1		173	Uncharacterized protein SP1879 {Streptococcus pneu	90.83
d2qfra2		312	Plant purple acid phosphatase, catalytic domain {K	90.4
d1utea_		302	Mammalian purple acid phosphatase {Pig (Sus scrofa	88.84
d1e1oa1		143	Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g	86.57

>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Rv0805 cyclic nucleotide phosphodiesterase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=1.2e-05  Score=73.10  Aligned_cols=79  Identities=18%  Similarity=0.301  Sum_probs=51.1

Q ss_pred             CcEEEEEccccCcH--------HHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcC
Q 014802          284 DMFVILSDIWLDNE--------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH  355 (418)
Q Consensus       284 ~~~v~lSDv~ld~~--------~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~  355 (418)
                      -+|+.|||+||+..        ...+.|+.+++........|..+|++||++...      ...+|+...+.++.+++++
T Consensus         5 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~pD~vl~~GDl~~~g------~~~~~~~~~~~l~~~~~~~   78 (256)
T d2hy1a1           5 YVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKG------EPAAYRKLRGLVEPFAAQL   78 (256)
T ss_dssp             EEEEEECCCCBC----------CHHHHHHHHHHHHHHHTCCCSEEEECSCCBSSC------CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeCccCCCCcccccCcCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCC------ChhHHHHHHHHhhhhhhhc
Confidence            46888999999654        234567777766544333588999999998532      1234444334444444432


Q ss_pred             CCccccceEEEecCCCCC
Q 014802          356 PRLKEHSRFLFIPGPDDA  373 (418)
Q Consensus       356 p~l~~~~~~v~vPG~~Dp  373 (418)
                           .+++.+||||||-
T Consensus        79 -----~~p~~~v~GNHD~   91 (256)
T d2hy1a1          79 -----GAELVWVMGNHDD   91 (256)
T ss_dssp             -----TCEEEECCCTTSC
T ss_pred             -----CCCEEEEcccccc
Confidence                 3699999999994

PyMOL of d2hy1a1

>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}	Back information, alignment and structure

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens [TaxId: 24]}	Back information, alignment and structure

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}	Back information, alignment and structure

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}	Back information, alignment and structure

>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}	Back information, alignment and structure