Citrus Sinensis ID: 014805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHEcccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MPDNRQVKSNAVANQSADNIEEAIWRLKihdnqegggvaqaspyparpgepdclfyrrtglcgygsncrfnhpayaaQGAQYreelperngqpdcgyylktgtckygstckyhhpkdrngagpvsfnilglpmrqdekscpyymrtgsckfgvackfhhpqpsslgtalpltgnaslgsmgssvlpssglqyagivpapgwntymgnigplsptsiagsnliyssrnqgdlgaGAQMHILSassqnlperpdqpdcryymntgtckygadckfhhpkeriaqsaasnigplglpsrpgqaicsnysmygickfgptcrfdhpyagypinyglslpplsildsslmnhqaisathsietspdasskipnwvqnsdavsvqhqnpdmknsttknsddsskvdhpphsvpncsepphdqsn
Flexible Loop (DISEMBL)
mpdnrqvksnavanqsadNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHpphsvpncsepphdqsn
Low Complexity Region (SEG)
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGlslpplsildsslMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Disordered region (IsUnstruct)
*********************EAIWRLKIH********************PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR********QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH****************************SGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIY********************************CRYYMNTGTCKYGADCKFHHPKE*I**********L*****PGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSL**************************************************************************
Disordered Region (DISOPRED)
***************************************************DCLFYRRTGLCGYGSNCRFNHPAYA*************NGQPDCGYYLKTGTCKYGSTCKYHHP******************RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA*******************SGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSS***********MHILSASSQNLPERPDQPDCRYYMNTGTCKYG****************************PGQAICSNYSMYGICKFGPTCRFDH*************************************************************************************************
Disordered Region (DISEMBL)
*************NQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISAT***********KIPNWVQNSDA*******************************************
Disordered Region (DISPRO)
**********************************************RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA********ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP******************************************************************************************PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY*******************************************************************DDSSK********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	418	2.2.26 [Sep-21-2011]
Q94AD9	404	Zinc finger CCCH domain-c	yes	no	0.870	0.900	0.466	4e-97
O48772	453	Zinc finger CCCH domain-c	no	no	0.875	0.807	0.403	5e-80
Q9SWF9	417	Zinc finger CCCH domain-c	N/A	no	0.729	0.731	0.443	8e-79
Q2R4J4	444	Zinc finger CCCH domain-c	yes	no	0.825	0.777	0.429	1e-78
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.811	0.853	0.400	6e-75
Q2QT65	454	Zinc finger CCCH domain-c	no	no	0.755	0.696	0.412	9e-75
Q5JLB5	439	Zinc finger CCCH domain-c	no	no	0.727	0.692	0.438	3e-74
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.696	0.621	0.401	2e-67
Q8L7N8	375	Zinc finger CCCH domain-c	no	no	0.806	0.898	0.392	2e-65
Q6NPN3	465	Zinc finger CCCH domain-c	no	no	0.720	0.647	0.392	1e-63

>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1

 Score =  355 bits (910), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 198/424 (46%), Positives = 255/424 (60%), Gaps = 60/424 (14%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61  LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP---------------SS 164
           GA PV FN++GLPMR  EK CPYY+RTG+C+FGVACKFHHPQP               + 
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180

Query: 165 LGTALPLTGNASLGSMGSSVLPSSGLQYA-----GIVPAPGWNTYMGNIGPLSPTSIAGS 219
           L  A  LT  ++ G++    +P S +        G +P  GW  YM           A S
Sbjct: 181 LRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYM-----------AAS 229

Query: 220 NLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 278
           N +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ HP  
Sbjct: 230 NSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGV 289

Query: 279 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSLPPL 337
           RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP +    SLP  
Sbjct: 290 RISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSLP-- 347

Query: 338 SILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSS 397
           +   S +  HQ IS T             PN    SD+ S+ +  PD+K    K S ++ 
Sbjct: 348 TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESSETE 387

Query: 398 KVDH 401
           K D+
Sbjct: 388 KPDN 391

Possesses RNA-binding and ribonuclease activities in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1

 Score =  298 bits (763), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 188/466 (40%), Positives = 251/466 (53%), Gaps = 100/466 (21%)

Query: 5   RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
           +QV+++  + +S D IE+   R+K++++     + Q+SPYP RPGE DC F+ RTG CGY
Sbjct: 6   QQVQNSTGSIRSPDKIEDTFRRMKVNED----NMEQSSPYPDRPGERDCQFFLRTGQCGY 61

Query: 65  GSNCRFNHP-AYAAQGA-QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG 122
           G++CR+NHP     QG   YR++LPER GQPDC    +TG CKYG TCKYHHPKDRNGAG
Sbjct: 62  GNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDC----ETGACKYGPTCKYHHPKDRNGAG 117

Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGS 182
           PV FN+LGLPMRQ EK CPYYM+TG C+FGVACKFHHP P S     P  G+++      
Sbjct: 118 PVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPHPHS----QPSNGHSAY---AM 170

Query: 183 SVLPSSGLQYA------------------------------------GIVPAPGWNTYMG 206
           S  PS G  YA                                    G++P  GW TYM 
Sbjct: 171 SSFPSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM- 229

Query: 207 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 266
                       SN IY+ + Q D  + A + +   S  +     ++ +CR++MNTGTCK
Sbjct: 230 ----------TASNPIYNMKTQLDSSSSASVAVTVTSHHH--SFSERAECRFFMNTGTCK 277

Query: 267 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH----- 321
           YG DCK+ HPKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH     
Sbjct: 278 YGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLN 337

Query: 322 --------------PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIE------ 357
                         PY   P    N  +S PP     ++L N + A +   S+E      
Sbjct: 338 PYNNTGLAMSSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDD 397

Query: 358 --TSPDASSKIPNWVQN-SDAVSVQHQNPDMKNSTTKNSDDSSKVD 400
             T P+ S    +   N SD+ S+ +  PD +  T K  DDS+++D
Sbjct: 398 SPTEPEKSEVEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1

 Score =  294 bits (753), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 157/354 (44%), Positives = 212/354 (59%), Gaps = 49/354 (13%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           +EA+W++ +  ++      ++ PYP  PGEPDC +Y RTGLC +G+ CRFNHP     A 
Sbjct: 8   QEAMWQMNLRSSE----TMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI 63

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E PER GQP+C YYLKTGTCK+G+TC++HHPKD+ G AG V+ NILG P+R +
Sbjct: 64  ATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPN 123

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTAL-----------PLTGNASLGSMG---- 181
           E    YY+RTG CKFG  CKFHHPQPS++  ++           P T      + G    
Sbjct: 124 ESERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNW 183

Query: 182 --SSVLPSSGLQ----YA------GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQG 229
             SS +PS   Q    YA      G+V  PGW+TY G +G  SP     ++  Y + +QG
Sbjct: 184 SSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGTSHQG 243

Query: 230 DL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADCKFHH 275
           +L  AG Q            +   +    N+ PERPDQP+C++YM TG CK+GA C+FHH
Sbjct: 244 ELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHH 303

Query: 276 PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 329
           P+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N
Sbjct: 304 PRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN 357

Pisum sativum (taxid: 3888)

>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2

 Score =  293 bits (751), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/410 (42%), Positives = 227/410 (55%), Gaps = 65/410 (15%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
           EEA+W++ + +  E G      PYP R GEPDC +Y RTGLC +G  C+FNHPA    A 
Sbjct: 36  EEAMWQMNLGEAMEAG------PYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 89

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E P+R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N LG P+R +
Sbjct: 90  AAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPN 149

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTAL--------------------------P 170
           EK C YY+RTG CKFG  CKFHHPQPS+   A+                          P
Sbjct: 150 EKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWP 209

Query: 171 LTGNASLGSMGSSVLP--SSGLQYA---GIVPAPGWNTYMGNIGPLSP----TSIAGSNL 221
           L+ +AS   + S   P  SS  Q     G+V  PGWN Y   IG  S      +  G+  
Sbjct: 210 LSRSASF--IASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQY 267

Query: 222 IYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYMNTGTCKYG 268
              SR     N GD G      AG+  + + +   +++ PERPDQP+C++YM TG CK+G
Sbjct: 268 YTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFG 327

Query: 269 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
           A CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FDHP     +
Sbjct: 328 AVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGT--V 385

Query: 329 NYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 378
            YGL+  P    D S     A    HS E SPD  S     + +SD+  +
Sbjct: 386 MYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  281 bits (720), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/377 (40%), Positives = 213/377 (56%), Gaps = 38/377 (10%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           ++A+W++ +  ++      +   YP RPGEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 18  QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74  ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ----Y 192
           E  C Y++RTG CKFG  CKF+HPQP      +P +G  S     +S + S   Q    Y
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQDPSSY 193

Query: 193 A------GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQN 246
           A      G+VP  GWN Y G +G +SP+   G++  Y +  Q +          S S  N
Sbjct: 194 ASLIMPQGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQSQGSFSGYN 252

Query: 247 ------------------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI 288
                              PERP QP+C++YM TG CK+G  CKFHHP++R A      +
Sbjct: 253 PGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLL 312

Query: 289 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQ 348
             +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP   +  +   S     ++++S    +
Sbjct: 313 SSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETD-EVVETSTGKSR 371

Query: 349 AISATHSIETSPDASSK 365
            +S + + + +  +S K
Sbjct: 372 RLSVSETRQAATTSSGK 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1

 Score =  281 bits (718), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 157/381 (41%), Positives = 207/381 (54%), Gaps = 65/381 (17%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           EEA+W++ +     GG   +++PYP R GEPDC +Y RTGLC +G  C+FNHP     A 
Sbjct: 44  EEAMWQMTL----GGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAV 99

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+   E P R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N+LG PMR +
Sbjct: 100 AAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPN 159

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP---LTGNASLGSMGSSVLPSSGLQYA 193
           EK C YY+RTG CKF   CKFHHPQPS+   A+     +   S  S G    P +   + 
Sbjct: 160 EKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWT 219

Query: 194 --------------------------GIVPAPGWNTYMGNIGPLSP-------------- 213
                                     G+V  PGWN Y   +G  SP              
Sbjct: 220 LSRSASFIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYYG 279

Query: 214 -----TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTCKY 267
                T   G + +Y S   G +  G    + +   +N+ PERPDQP+C++YM TG CK+
Sbjct: 280 SRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQFYMKTGDCKF 335

Query: 268 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP 327
           GA CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C+FDHP     
Sbjct: 336 GAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMG--T 393

Query: 328 INYGLSLPPLSILDSSLMNHQ 348
           + YG +  P    D S M++Q
Sbjct: 394 LMYGSATSPRG--DVSSMHYQ 412

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2

 Score =  279 bits (713), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/356 (43%), Positives = 197/356 (55%), Gaps = 52/356 (14%)

Query: 22  EAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAAQ 78
           E +W+        G G  Q  PYP R GEPDC +Y RTGLC +G +CRFNHP     A  
Sbjct: 58  EGMWQ---QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114

Query: 79  GAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDE 137
            A+ + E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG V  N LG P+R  E
Sbjct: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174

Query: 138 KSCPYYMRTGSCKFGVACKFHHPQ-----PSSLGTAL------------PLTGN-ASLGS 179
           K C YY++TG CK+G  CKFHHP+      SS G+ +            P TG  AS   
Sbjct: 175 KECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAF 234

Query: 180 MGSSVLPSSGLQ----YA------GIVPAPGWNTYMGNIGPLSPTSIA----GSNLIYSS 225
              S +PS   Q    YA      G+V  P WN+Y G + P+S +       G+   Y +
Sbjct: 235 PRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGT 294

Query: 226 RNQGDLGAGAQMHILSASSQN-------------LPERPDQPDCRYYMNTGTCKYGADCK 272
             Q D  AG Q  +    S +              PERPDQP+C+YYM TG CK+GA CK
Sbjct: 295 SQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCK 354

Query: 273 FHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
           FHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG  C+FDHP    P+
Sbjct: 355 FHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM 410

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 193/346 (55%), Gaps = 55/346 (15%)

Query: 20  IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYA 76
           ++E++WRL +  +           YP RPG PDC +Y RTG+CGYG+ CR+NHP   A  
Sbjct: 28  LQESMWRLGLGSDS----------YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASV 77

Query: 77  AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQ 135
               +   + PER G+P C +YLKTGTCK+G++CK+HHPK+  G+   V  NI G P+R+
Sbjct: 78  EATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVRE 137

Query: 136 DEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP--------------------LTGNA 175
            +  C YY++TG CKFG+ CKFHHPQP+  GT +P                      G +
Sbjct: 138 GDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVPPPPASAPQFYPSVQSLMPDQYGGPS 195

Query: 176 SLGSMGSSVLPSSGLQYA--------GIVPAPGWNTYMGNIGP-LSP--------TSIAG 218
           S   +  ++LP S +Q A        G+VP PGW+ Y   + P LSP        TS+ G
Sbjct: 196 SSLRVARTLLPGSYMQGAYGPMLLTPGVVPIPGWSPYSAPVSPALSPGAQHAVGATSLYG 255

Query: 219 SNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP 276
              + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK+G  CKFHHP
Sbjct: 256 VTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHP 315

Query: 277 KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
           ++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct: 316 RDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 202/380 (53%), Gaps = 43/380 (11%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           + A+W++ +  +   G       YP R GEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 19  QNAMWQMNLGSDDTMGVDGS---YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
             A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G  G VS N+L  P+R +
Sbjct: 76  ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIV 196
           E  C Y++R G CKFG  CKF+HPQ  S         N  +   GS V   S LQ     
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185

Query: 197 PAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL-------GAGAQMHILSASSQNL-P 248
           P+  W+       P      +G    ++S +QG L       G    +   +   +N+ P
Sbjct: 186 PSYSWSRTSFVANPPRLQDPSG----FASGSQGGLFSSGFHSGNSVPLGFYALPRENVFP 241

Query: 249 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMY 308
           ERP QP+C++YM TG CK+G  CKFHHP++R        +  +GLP RPG+ +C  YS Y
Sbjct: 242 ERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRY 301

Query: 309 GICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAIS-------ATHSIETSPD 361
           GICKFGP+C+FDHP   +  N   + P  S   SSL    AI+        + S+E  P 
Sbjct: 302 GICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAITTELRNLLVSSSVEAKP- 357

Query: 362 ASSKIPNWVQNSDA-VSVQH 380
             + +P      D  V  QH
Sbjct: 358 --TSLPETTSAKDTIVDAQH 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/357 (39%), Positives = 189/357 (52%), Gaps = 56/357 (15%)

Query: 13  ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNH 72
           A  +   IE ++WRL +              +P RP EPDC++Y RTG+CGYGS CRFNH
Sbjct: 22  AQGTETGIEASMWRLGLRGGG-----GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNH 76

Query: 73  PAYAA--QGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVS 125
           P   A   G    E  E PER GQP C ++++TGTCK+G++CKYHHP+   G     PVS
Sbjct: 77  PRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVS 136

Query: 126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVL 185
            N +G P+R  EK C Y+MRTG CKFG  C++HHP P   G   P        S G ++ 
Sbjct: 137 LNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQQQQLSAGPTMY 194

Query: 186 PS-------SGLQYA---------------------------GIVPAPGWNTYMGNIGPL 211
           PS       S  QY                            G+VP  GWN Y  ++  +
Sbjct: 195 PSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAM 254

Query: 212 -SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 264
            SP +    G++ +Y     S +     +G     +S   Q  P+RP+QP+C+Y+M TG 
Sbjct: 255 PSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGD 314

Query: 265 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 321
           CK+G  C+FHHP E  A   AS +  +GLP RPG   C++++ +GICKFGP C+FDH
Sbjct: 315 CKFGTSCRFHHPME-AASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
255576147	456	zinc finger protein, putative [Ricinus c	0.976	0.894	0.662	1e-166
224129058	446	predicted protein [Populus trichocarpa]	0.973	0.912	0.647	1e-164
225447159	450	PREDICTED: zinc finger CCCH domain-conta	0.990	0.92	0.634	1e-159
224068913	450	predicted protein [Populus trichocarpa]	0.980	0.911	0.630	1e-159
147819907	460	hypothetical protein VITISV_020358 [Viti	0.913	0.830	0.580	1e-139
449450892	430	PREDICTED: zinc finger CCCH domain-conta	0.954	0.927	0.543	1e-128
356554539	417	PREDICTED: zinc finger CCCH domain-conta	0.921	0.923	0.534	1e-123
356501261	415	PREDICTED: zinc finger CCCH domain-conta	0.913	0.920	0.531	1e-122
357493165	422	Zinc finger CCCH domain-containing prote	0.875	0.867	0.566	1e-122
18390466	404	zinc finger CCCH domain-containing prote	0.870	0.900	0.466	3e-95

>gi|255576147|ref|XP_002528968.1| zinc finger protein, putative [Ricinus communis] gi|223531614|gb|EEF33442.1| zinc finger protein, putative [Ricinus communis]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 297/448 (66%), Positives = 341/448 (76%), Gaps = 40/448 (8%)

Query: 5   RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
           RQVKSNAV+NQS DNIEEAIWRLKIHDNQE GG+A +SPYP RPGEPDC++Y RTGLCGY
Sbjct: 12  RQVKSNAVSNQSPDNIEEAIWRLKIHDNQEQGGMAPSSPYPDRPGEPDCVYYLRTGLCGY 71

Query: 65  GSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV 124
           G+NCRFNHP YAAQG Q++EELPER GQPDCGYYLKTGTCKYGSTCKYHHP+DRNGAGPV
Sbjct: 72  GNNCRFNHPPYAAQGNQFKEELPERVGQPDCGYYLKTGTCKYGSTCKYHHPRDRNGAGPV 131

Query: 125 SFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSV 184
           SFNI+GLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP+ LGT LP TG A+ G M SS 
Sbjct: 132 SFNIVGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPAPLGTGLPFTGPAASGPMASSN 191

Query: 185 LPSSGLQYA----------------------------------GIVPAPGWNTYMGNIGP 210
           LPSSGL Y                                   G+V A GWNTY+GN+ P
Sbjct: 192 LPSSGLPYVGGLPTWSLPRAPYVSGPRLQGPQTYMPAVLSPSQGVVAAQGWNTYVGNLSP 251

Query: 211 LSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD 270
           +S  S+ GS+++Y+SRNQ + G+  Q+H+LS +S NLPERPDQP+CRY+MNTGTCKYG+D
Sbjct: 252 MSSGSVLGSSIVYNSRNQSESGSSGQVHMLSTTSSNLPERPDQPECRYFMNTGTCKYGSD 311

Query: 271 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINY 330
           CK+HHPKERIAQ A ++IGP+GLPSRPGQ ICSNYSMYG+CKFGPTCRFDHP+ GYP  Y
Sbjct: 312 CKYHHPKERIAQLATNSIGPVGLPSRPGQPICSNYSMYGLCKFGPTCRFDHPFTGYPYGY 371

Query: 331 GLSLPPLSILDSSLMNHQAIS-ATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNST 389
            LSL PLSI+DSSL+++  +S    S E+    SSK P+WVQN D  S +HQN D     
Sbjct: 372 SLSLQPLSIIDSSLLSYPRMSPPALSSESPISLSSKFPDWVQNPDGASSKHQNSDR---N 428

Query: 390 TKNSDDSSKV--DHPPHSVPNCSEPPHD 415
           TK SDD  +     PPHS    SEP HD
Sbjct: 429 TKISDDQPEQAGSPPPHSSQASSEPSHD 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129058|ref|XP_002320490.1| predicted protein [Populus trichocarpa] gi|222861263|gb|EEE98805.1| predicted protein [Populus trichocarpa]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/454 (64%), Positives = 340/454 (74%), Gaps = 47/454 (10%)

Query: 1   MPD--NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRR 58
           MPD  NRQVKSNAV+NQSA+NIEEAIWRLKIHD+QE GG+AQ+SPYP RPG PDC +Y R
Sbjct: 1   MPDHNNRQVKSNAVSNQSAENIEEAIWRLKIHDHQEQGGMAQSSPYPDRPGAPDCGYYLR 60

Query: 59  TGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
           TGLCGYGSNCRFNHP YAA GAQ REELPER GQPDCGYYLKTGTCKYGSTCKYHHP+DR
Sbjct: 61  TGLCGYGSNCRFNHPVYAALGAQLREELPERVGQPDCGYYLKTGTCKYGSTCKYHHPRDR 120

Query: 119 NGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
           NGAGPVSFN LGLPMRQDEKSCPYYMRT SCKFGVACKFHHPQP+SLGT+  LTG A+ G
Sbjct: 121 NGAGPVSFNALGLPMRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSFSLTGAAAFG 180

Query: 179 SMGSSVLPSSGLQYA----------------------------------GIVPAPGWNTY 204
           S GS ++PSSGL Y                                   GI+P PGWNTY
Sbjct: 181 STGSPIVPSSGLPYVGGLPTWSLPRAPLMSGTNLQGPQAYMPVVVSPSPGIIPVPGWNTY 240

Query: 205 MGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 264
           +GN+ P+S +SI GSN  Y SRNQGD G+G Q+H+LS  S  LPERP QP+CR++M+TGT
Sbjct: 241 VGNLNPMSSSSILGSNRAYDSRNQGDSGSGGQVHLLSTVSPILPERPGQPECRHFMSTGT 300

Query: 265 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 324
           CKYG+DCK+HHPKERIAQ A + +G LGLPSRPGQA+C +YSMYGICKFGPTCR+DHP  
Sbjct: 301 CKYGSDCKYHHPKERIAQLATNTMGLLGLPSRPGQAVCPDYSMYGICKFGPTCRYDHPIH 360

Query: 325 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQNP 383
            YP NY LSLP LSI+DSSL+ +  ++     + +P   SK+P+ + N D  S  +HQNP
Sbjct: 361 TYPYNYSLSLPSLSIMDSSLITYPRMA-----QAAPVTLSKLPDLIHNPDGASYNKHQNP 415

Query: 384 DMKNSTTKNSDDSSKV--DHPPHSVPNCSEPPHD 415
           D   ++TK SDD ++     PPHS    SEP HD
Sbjct: 416 D---TSTKISDDPTEQAGSPPPHSSQASSEPSHD 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447159|ref|XP_002275775.1| PREDICTED: zinc finger CCCH domain-containing protein 12 [Vitis vinifera] gi|297739220|emb|CBI28871.3| unnamed protein product [Vitis vinifera]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 288/454 (63%), Positives = 340/454 (74%), Gaps = 40/454 (8%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M DNRQV+SN V+N S++N+EEAI RLKIHDNQE G V  +SPYP RPGEPDC++Y RTG
Sbjct: 1   MLDNRQVQSNGVSNPSSENVEEAILRLKIHDNQEEGSVGHSSPYPDRPGEPDCIYYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           LCGYGSNCRFNHPAY+ QGAQYR ELPER GQPDCGY+LKTGTCKYGSTCKYHHP+DR+G
Sbjct: 61  LCGYGSNCRFNHPAYSEQGAQYRGELPERVGQPDCGYFLKTGTCKYGSTCKYHHPRDRHG 120

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           AGPVS NI+GLPMRQ+EK C YYMRTG CKFG ACKFHHPQP+S GT LP TG A+ GS 
Sbjct: 121 AGPVSLNIVGLPMRQEEKPCSYYMRTGLCKFGAACKFHHPQPASAGTVLPATGPAAFGST 180

Query: 181 GSSVLPSSGLQYA----------------------------------GIVPAPGWNTYMG 206
           GSS+LPSSGL Y                                   GIVPA GWNTYMG
Sbjct: 181 GSSILPSSGLPYVGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYMG 240

Query: 207 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 266
           N+ P+S T I GSNL+Y+SRNQ + G+  Q+H+LS+   +LPERPDQP+CRY+M+TG+CK
Sbjct: 241 NMSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCK 300

Query: 267 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 326
           YG+DCK+HHPKERIAQ A + +GPLGLP RPGQA+CS+Y++YG+CK+GPTC+FDHP  GY
Sbjct: 301 YGSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGY 360

Query: 327 -PINYGLSLPPLSILDSSLMNHQAISAT-HSIETSPDASSKIPNWVQNSDAVSVQHQNPD 384
              NY LSLPPLSILD SL+ +Q  S+T HS ETSP  SSK P+WVQ +++ S + QNPD
Sbjct: 361 SSYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPD 420

Query: 385 MKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN 418
            K          S +    HS PN SEPP DQS+
Sbjct: 421 TKAPEGPPEQAGSLL----HSSPNSSEPPQDQSD 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068913|ref|XP_002302855.1| predicted protein [Populus trichocarpa] gi|222844581|gb|EEE82128.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/455 (63%), Positives = 333/455 (73%), Gaps = 45/455 (9%)

Query: 1   MPD--NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRR 58
           MPD  NRQVKSNAV+N SADNIEEA WRLKIHD QE GG+AQ+SPYP RPG PDC +Y R
Sbjct: 1   MPDQNNRQVKSNAVSNHSADNIEEAFWRLKIHDPQEQGGMAQSSPYPDRPGVPDCGYYLR 60

Query: 59  TGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
           TGLCGYGSNCR+NHP YAAQG Q REELPER GQPDCGYY+KTGTCKYGSTCKYHHP+DR
Sbjct: 61  TGLCGYGSNCRYNHPIYAAQGTQLREELPERIGQPDCGYYIKTGTCKYGSTCKYHHPRDR 120

Query: 119 NGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
           NGAGPVSFN LGLPMRQDEKSCPYYMRT SCKFGVACKFHHPQP+SLGT+LPLTG A+ G
Sbjct: 121 NGAGPVSFNALGLPMRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSLPLTGAAAFG 180

Query: 179 SMGSSVLPSSGLQYA-----------------------------------GIVPAPGWNT 203
           S GS ++PSSGL Y                                    GIVP PGWNT
Sbjct: 181 STGSPIVPSSGLPYVGGLPTWSLPRAPPYMSGTHLQGPQAYMPVVVSPSQGIVPVPGWNT 240

Query: 204 YMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTG 263
           Y+GN  P+S +SI GSN  Y SRN GD  +G+  H+LS +   LPERPDQP+CR++M++G
Sbjct: 241 YVGNSNPMSSSSILGSNRAYDSRNHGD--SGSSGHLLSTAIPALPERPDQPECRHFMSSG 298

Query: 264 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 323
           TCKYG+DCK+HHPKERIAQ A + +GP GLP RPGQA+C +YSMYGICKFGPTCR+DHP 
Sbjct: 299 TCKYGSDCKYHHPKERIAQLATNTMGPFGLPLRPGQAVCPDYSMYGICKFGPTCRYDHPL 358

Query: 324 AGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQN 382
             YP NY LSLP LS++DSSL+ +  ++       +P + SK+P+ ++N D  S  +HQN
Sbjct: 359 PTYPYNYSLSLPSLSMMDSSLVTYPRMAQAALSSATPVSLSKLPDLIRNPDGASYNKHQN 418

Query: 383 PDMKNSTTKNSDDSSK--VDHPPHSVPNCSEPPHD 415
            D   S TK  DD ++     PPHS    SEP HD
Sbjct: 419 SD---SNTKTLDDPTEHAGSPPPHSSQASSEPSHD 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819907|emb|CAN76191.1| hypothetical protein VITISV_020358 [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/453 (58%), Positives = 311/453 (68%), Gaps = 71/453 (15%)

Query: 33  QEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQ 92
           +E G V  +SPYP RPGEPDC++Y RTGLCGYGSNCRFNHPAY+ QGAQYR ELPER GQ
Sbjct: 12  KEEGSVGHSSPYPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQGAQYRGELPERVGQ 71

Query: 93  PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFG 152
           PDCGY+LKTGTCKYGSTCKYHHP+DR+GAGPV  NI+GLPMRQ+EK C YYMRTG CKFG
Sbjct: 72  PDCGYFLKTGTCKYGSTCKYHHPRDRHGAGPVXLNIVGLPMRQEEKPCSYYMRTGLCKFG 131

Query: 153 VACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYA------------------- 193
            ACKFHHPQP+S GT LP TG A+ GS GSS+LPSSGL Y                    
Sbjct: 132 AACKFHHPQPASAGTVLPATGPAAFGSTGSSILPSSGLPYVGGLPAWSLPRAPYIPGPRM 191

Query: 194 ---------------GIVPAPGWNTYM-------------------------------GN 207
                          GIVPA GWNTYM                               GN
Sbjct: 192 QGPQTYMPIVLSPSQGIVPAQGWNTYMPHFLVLMKSFHVVNLVYSIDPNEFVICEIPRGN 251

Query: 208 IGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 267
           + P+S T I GSNL+Y+SRNQ + G+  Q+H+LS+   +LPERPDQP+CRY+M+TG+CKY
Sbjct: 252 MSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCKY 311

Query: 268 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY- 326
           G+DCK+HHPKERIAQ A + +GPLGLP RPGQA+CS+Y++YG+CK+GPTC+FDHP  GY 
Sbjct: 312 GSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGYS 371

Query: 327 PINYGLSLPPLSILDSSLMNHQAISAT-HSIETSPDASSKIPNWVQNSDAVSVQHQNPDM 385
             NY LSLPPLSILD SL+ +Q  S+T HS ETSP  SSK P+WVQ +++ S + QNPD 
Sbjct: 372 SYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPDT 431

Query: 386 KNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN 418
           K          S +    HS PN SEPP DQS+
Sbjct: 432 KAPEGPPEQAGSLL----HSSPNSSEPPQDQSD 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450892|ref|XP_004143196.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus] gi|449515163|ref|XP_004164619.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/447 (54%), Positives = 299/447 (66%), Gaps = 48/447 (10%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MPDN QV+ N V NQS D I EA+WRL+I DNQ+GG  A++SPYP RPGEPDCL+Y RTG
Sbjct: 1   MPDNLQVQRNDVPNQSPD-ISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTG 59

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
            C YGSNCRFNHP Y  QGA Y  ELPER GQPDC Y+LKTGTCKYG +CKYHHP+DR G
Sbjct: 60  SCSYGSNCRFNHPVYVGQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRG 119

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           AGPV+FNILGLPMRQ+EKSCPYY+RTGSCKFGV+CKF+HPQPS +G  LP     +LGS 
Sbjct: 120 AGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSG 179

Query: 181 GSSVLPSSGLQY------------------------------AGIVPAPGWNTYMGNIGP 210
           G+  +PSSG+ Y                               G + A  WNTY+ N+ P
Sbjct: 180 GTPFMPSSGVPYPAWSMPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVSNVNP 239

Query: 211 LSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD 270
           + P      NL Y++ N  D  +  Q+  LS S+  LP+RPDQP+CRY+MN GTCKYG+D
Sbjct: 240 ILP------NLGYNNINLEDSYSNGQL-ALSTSTPTLPDRPDQPECRYFMNNGTCKYGSD 292

Query: 271 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINY 330
           CKFHHPK+RIAQSA +    LGLPSRPGQAICS Y+MYG+CK+GP+C+FDHP   YP NY
Sbjct: 293 CKFHHPKQRIAQSATNA---LGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSPTYPYNY 349

Query: 331 GLSLPPLSILDSSLMNHQAISATHSI-ETSPDASSKIPNWVQNSDAVSVQHQNPDMKNST 389
           G +LP   +LDSS++ + + + T S  ET P   SK   WVQ +D  + + +  D K   
Sbjct: 350 GFTLP---LLDSSIIKYPSNNFTMSSHETLPGTVSKSSEWVQKADPSNNKRRTTDSKVII 406

Query: 390 TKNSDDSSKVDHPPHSVPNCSEPPHDQ 416
               ++++ V     S+P  SE   DQ
Sbjct: 407 DSTGEEATSVS---CSLPGGSESLQDQ 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554539|ref|XP_003545603.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Glycine max]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/447 (53%), Positives = 288/447 (64%), Gaps = 62/447 (13%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA    S+DNIEEAI RLKI+DN +    AQ++ YP RPGEP+CL+Y RTG
Sbjct: 1   MPENRQVLRNA---DSSDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTG 57

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
            CGYGSNCR++HPA+ + G  Y EELP+R GQPDC Y+LKTG CKYGSTCKYHHPKDR G
Sbjct: 58  ACGYGSNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGMCKYGSTCKYHHPKDRRG 117

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           A PVSFN LG PMRQ+EKSCPYYMRTGSCKFGVACKFHHPQ +SLG A PL G     + 
Sbjct: 118 AAPVSFNTLGFPMRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLG-AYPLAGGPPTPT- 175

Query: 181 GSSVLPSSGLQYA--------------------------------GIVPAPGWNTYMGNI 208
            S+++P+SGL YA                                G++P   WN YMGN+
Sbjct: 176 -STIIPTSGLSYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLPSSQGVIPVQSWNNYMGNM 234

Query: 209 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYG 268
            P  P    GSNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCKYG
Sbjct: 235 NPAMPNGFLGSNLVYDYMNLGEPLFGGQ-----AINSALPNRPDQPECRYFMSTGTCKYG 289

Query: 269 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
           +DCKFHHPKERI+QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    P 
Sbjct: 290 SDCKFHHPKERISQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQ 346

Query: 329 NYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNS 388
           NYGL+ P +++LD+ L   + +S     ETSP   S   N +Q+SDA +           
Sbjct: 347 NYGLTSPAMNVLDTPLT--RGLSNVQPPETSPSKLSS-DNKLQHSDAKAA---------- 393

Query: 389 TTKNSDDSSKVDHPPHSVPNCSEPPHD 415
                D S + D   +S P  +EP HD
Sbjct: 394 ---TEDSSKQDDTTSNSFPASAEPLHD 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501261|ref|XP_003519444.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 1 [Glycine max] gi|356501263|ref|XP_003519445.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 2 [Glycine max]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/448 (53%), Positives = 292/448 (65%), Gaps = 66/448 (14%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA    S DNIEEAI  LKI+DN +    AQ++ YP RPGEP+CL+Y RTG
Sbjct: 1   MPENRQVLRNA---DSGDNIEEAIRHLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTG 57

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           +CGYG+NCR++HPA+ + G  Y EELP+R GQPDC Y+LKTGTCKYGSTCKYHHPKDR G
Sbjct: 58  MCGYGTNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGTCKYGSTCKYHHPKDRRG 117

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           A PVSFN LGLPMRQ+EKSCPYYMRTGSCKFGVACKFHHPQ +SLG A PL G+    + 
Sbjct: 118 AAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLG-AYPLAGSP---TP 173

Query: 181 GSSVLPSSGLQYA--------------------------------GIVPAPGWNTYMGNI 208
            S+++P+SGL YA                                G++P   WN YMGN+
Sbjct: 174 TSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLSSSQGVIPVQSWNNYMGNM 233

Query: 209 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYG 268
            P  P    GSNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCKYG
Sbjct: 234 NPAMPNGFLGSNLVYDYMNLGESLFGGQ-----AINSALPNRPDQPECRYFMSTGTCKYG 288

Query: 269 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
           +DCKFHHPKER++QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    P 
Sbjct: 289 SDCKFHHPKERMSQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQ 345

Query: 329 NYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNS 388
           NYGL+ P +++LD+ L   + +S     ETSP   S     +Q+SDA +           
Sbjct: 346 NYGLTSPAMNVLDTPLT--RGLSNVQPPETSPSKLSD--KKLQHSDAKAA---------- 391

Query: 389 TTKNSDDSSKVDHPP-HSVPNCSEPPHD 415
               ++DSSK D    +S P  +EP H+
Sbjct: 392 ----TEDSSKQDDTTLNSFPASAEPLHN 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493165|ref|XP_003616871.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355518206|gb|AES99829.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/404 (56%), Positives = 275/404 (68%), Gaps = 38/404 (9%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA +N S DNIEEAI RLKI+  ++   V Q+ PYP RPGEPDC++Y RTG
Sbjct: 1   MPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVYYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           +CGYGSNCR+NHPA  +   QY EELPER GQPDC Y+LKTGTCKYGSTCKYHHPKDR G
Sbjct: 61  MCGYGSNCRYNHPANISPVTQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRG 120

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP-QPSSLGTALPLTGNASLGS 179
           A PV FN LGLPMRQ+EKSCPYYMRTGSCKFGVACKFHHP Q +S G A P+  +    +
Sbjct: 121 AAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAASPPSTT 180

Query: 180 MGSSVLPSSG---------LQYA-----------------GIVPAPGWNTYMGNIGPLSP 213
           + SS  P +G         + Y                  GI+PA  W+ YMG+I P  P
Sbjct: 181 VTSSGFPYAGGFPAWSMPRMSYLSGQAIQSYVPPFLPSSQGIMPALSWSNYMGSINPAMP 240

Query: 214 TSIAGSNLIYSSRN-QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCK 272
           T   GSNL+Y   N  G+  +G Q     A + +LP+RP+QPDC+Y+M+TGTCKYG+DCK
Sbjct: 241 TGFIGSNLVYDYMNPAGETLSGGQ-----AMNSSLPDRPEQPDCKYFMSTGTCKYGSDCK 295

Query: 273 FHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGL 332
           FHHPKERIAQ+ +  I PLGLP RPG AICS Y +YG+CKFGPTC+FDHP      NYGL
Sbjct: 296 FHHPKERIAQTLS--INPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAISQNYGL 353

Query: 333 SLPPLSILDSSLM-NHQAISATHSIETSPDASSKIPNWVQNSDA 375
             P LS+ D+SL+ N + +S     ETSP   S   + +Q SD 
Sbjct: 354 PSPTLSVFDASLLTNPRRLSTVQPAETSPSKQST--DKLQQSDT 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390466|ref|NP_563725.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] gi|42571337|ref|NP_973759.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] gi|62901489|sp|Q94AD9.1|C3H3_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 3; Short=AtC3H3; AltName: Full=Zinc finger CCCH domain-containing protein ZFN-like 4 gi|15081721|gb|AAK82515.1| At1g04990/F13M7_1 [Arabidopsis thaliana] gi|21360515|gb|AAM47373.1| At1g04990/F13M7_1 [Arabidopsis thaliana] gi|225897880|dbj|BAH30272.1| hypothetical protein [Arabidopsis thaliana] gi|332189654|gb|AEE27775.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] gi|332189655|gb|AEE27776.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana]

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 198/424 (46%), Positives = 255/424 (60%), Gaps = 60/424 (14%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61  LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP---------------SS 164
           GA PV FN++GLPMR  EK CPYY+RTG+C+FGVACKFHHPQP               + 
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180

Query: 165 LGTALPLTGNASLGSMGSSVLPSSGLQYA-----GIVPAPGWNTYMGNIGPLSPTSIAGS 219
           L  A  LT  ++ G++    +P S +        G +P  GW  YM           A S
Sbjct: 181 LRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYM-----------AAS 229

Query: 220 NLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 278
           N +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ HP  
Sbjct: 230 NSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGV 289

Query: 279 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSLPPL 337
           RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP +    SLP  
Sbjct: 290 RISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSLP-- 347

Query: 338 SILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSS 397
           +   S +  HQ IS T             PN    SD+ S+ +  PD+K    K S ++ 
Sbjct: 348 TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESSETE 387

Query: 398 KVDH 401
           K D+
Sbjct: 388 KPDN 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.913	0.945	0.457	2.4e-92
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.703	0.784	0.423	5.8e-66
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.504	0.531	0.441	2.8e-50
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.724	0.651	0.369	1.2e-47
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.653	0.583	0.396	8.8e-47
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.708	0.640	0.357	3.8e-46
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.626	0.5	0.352	2e-40
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.700	0.654	0.331	2.1e-38
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.188	0.963	0.506	3.6e-21
TAIR|locus:2013763	321	AT1G29570 [Arabidopsis thalian	0.122	0.158	0.509	1.1e-07

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 189/413 (45%), Positives = 250/413 (60%)

Query:     1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
             M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct:     5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query:    61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
             LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct:    61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query:   120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP-----SSLG-TALPL-- 171
             GA PV FN++GLPMR  EK CPYY+RTG+C+FGVACKFHHPQP     ++ G ++ P   
Sbjct:   121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180

Query:   172 ----TGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLS-PTSIAGSNLIYSSR 226
                 +G   + + G+   P     Y  I+ +P      G + P      +A SN +Y+ +
Sbjct:   181 LRYASGLTMMSTYGTLPRPQVPQSYVPILVSPS----QGFLPPQGWAPYMAASNSMYNVK 236

Query:   227 NQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA 285
             NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ HP  RI+Q   
Sbjct:   237 NQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPP 296

Query:   286 SNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXM 345
             S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP                  
Sbjct:   297 SLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP-GLTMATSLPTPFASPVT 355

Query:   346 NHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKN-SDDSS 397
              HQ IS T +   S   S+  P+  + S     + + PD  N   ++ S+D+S
Sbjct:   356 THQRISPTPNRSDSKSLSNGKPDVKKESS----ETEKPD--NGEVQDLSEDAS 402

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 135/319 (42%), Positives = 185/319 (57%)

Query:    21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
             + A+W++ +  +   G     S YP R GEPDC +Y RTGLC +GS CRFNHP       
Sbjct:    19 QNAMWQMNLGSDDTMG--VDGS-YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75

Query:    78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
               A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G  G VS N+L  P+R +
Sbjct:    76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135

Query:   137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIV 196
             E  C Y++R G CKFG  CKF+HPQ  S         N  +   GS V   S LQ     
Sbjct:   136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185

Query:   197 PAPGWN--TYMGNIGPLS-PTSIAGSNL--IYSSRNQGDLGAGAQMHILSASSQNL-PER 250
             P+  W+  +++ N   L  P+  A  +   ++SS      G    +   +   +N+ PER
Sbjct:   186 PSYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHS--GNSVPLGFYALPRENVFPER 243

Query:   251 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGI 310
             P QP+C++YM TG CK+G  CKFHHP++R        +  +GLP RPG+ +C  YS YGI
Sbjct:   244 PGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGI 303

Query:   311 CKFGPTCRFDHPYAGYPIN 329
             CKFGP+C+FDHP   +  N
Sbjct:   304 CKFGPSCKFDHPMRVFTYN 322

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 102/231 (44%), Positives = 141/231 (61%)

Query:    21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
             ++A+W++ +  ++      +   YP RPGEPDC +Y RTGLC +GS CRFNHP       
Sbjct:    18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73

Query:    78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
               A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct:    74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133

Query:   137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ----Y 192
             E  C Y++RTG CKFG  CKF+HPQP      +P +G  S     +S + S   Q    Y
Sbjct:   134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQDPSSY 193

Query:   193 A------GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGD-LGAGAQ 236
             A      G+VP  GWN Y G +G +SP+   G++  Y +  Q + + +G+Q
Sbjct:   194 ASLIMPQGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQ 243

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 123/333 (36%), Positives = 162/333 (48%)

Query:     3 DNRQVKSNAVANQSADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGL 61
             ++R   S+  + Q  +  IE ++WRL +     GGG      +P RP EPDC++Y RTG+
Sbjct:    11 ESRSDPSHEWSAQGTETGIEASMWRLGLRGG--GGG---GETFPERPDEPDCIYYLRTGV 65

Query:    62 CGYGSNCRFNHPAYAAQ--GAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
             CGYGS CRFNHP   A   G    E  E PER GQP C ++++TGTCK+G++CKYHHP+ 
Sbjct:    66 CGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQ 125

Query:   118 RNGAG---PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGN 174
               G     PVS N +G P+R  EK C Y+MRTG CKFG  C++HHP P   G   P    
Sbjct:   126 GGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQ 183

Query:   175 ASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRN-QGDLGA 233
                 S G ++ PS  LQ   +  +  +   +     L P S   S   Y        +  
Sbjct:   184 QQQLSAGPTMYPS--LQSQTVPSSQQYGVVLAR-PQLLPGSYVQSPYGYGQMVLPPGMVP 240

Query:   234 GAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG- 292
              +  +   AS   +P    QP     M T +  YG       P     QS  S+ G    
Sbjct:   241 YSGWNPYQASVSAMPSPGTQPS----MGTSSV-YGITPL--SPSAPAYQSGPSSTGVSNK 293

Query:   293 ---LPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
                 P RP Q  C  +   G CKFG +CRF HP
Sbjct:   294 EQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHP 326

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 129/325 (39%), Positives = 169/325 (52%)

Query:    17 ADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA- 74
             AD  ++E++WRL         G+   S YP RPG PDC +Y RTG+CGYG+ CR+NHP  
Sbjct:    24 ADTGLQESMWRL---------GLGSDS-YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRD 73

Query:    75 YAAQGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGL 131
              A+  A  R   + PER G+P C +YLKTGTCK+G++CK+HHPK+  G+   V  NI G 
Sbjct:    74 RASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGY 133

Query:   132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVL------ 185
             P+R+ +  C YY++TG CKFG+ CKFHHPQP+  GT +P    AS      SV       
Sbjct:   134 PVREGDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVP-PPPASAPQFYPSVQSLMPDQ 190

Query:   186 ---PSSGLQYAGIVPAPGWNTYM-GNIGP--LSP--TSIAGSNLIYSSRNQGDLGAGAQM 237
                PSS L+ A  +  PG  +YM G  GP  L+P    I G +  YS+     L  GAQ 
Sbjct:   191 YGGPSSSLRVARTL-LPG--SYMQGAYGPMLLTPGVVPIPGWSP-YSAPVSPALSPGAQ- 245

Query:   238 HILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRP 297
             H + A+S                +T     G       P   I +  A        P RP
Sbjct:   246 HAVGATSLY--------GVTQLTSTTPSLPGVYPSLSSPTGVIQKEQA-------FPERP 290

Query:   298 GQAICSNYSMYGICKFGPTCRFDHP 322
             G+  C  Y   G CKFG +C+F HP
Sbjct:   291 GEPECQYYLKTGDCKFGTSCKFHHP 315

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 118/330 (35%), Positives = 159/330 (48%)

Query:    20 IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY--AA 77
             +E  +WRL +     GGG  ++  YP RP EPDC++Y RTG+CGYGS CRFNHP    A 
Sbjct:    29 VEAPMWRLGLSGGGGGGGGGES--YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV 86

Query:    78 QGAQYREE--LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLP 132
              G    E   LPER G P C ++++TGTCK+G++CKYHHP+   G G   PVS + LG P
Sbjct:    87 IGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYP 146

Query:   133 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL-GTAL--------PLTGNASL-GSMGS 182
             +R  EK C YY+RTG CKFG+ C+F+HP P ++ G           P     ++  ++ S
Sbjct:   147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206

Query:   183 SVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLI-YSSRNQGDLGAGAQMHILS 241
               +PSS  QY  ++  P + T      P  P  +    ++ YS  N              
Sbjct:   207 QSIPSSQ-QYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNP-----------YQ 254

Query:   242 ASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAI 301
             AS   +P    QP        G          +    +   S  SN      P RP Q  
Sbjct:   255 ASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPS--SNSTSKEFPQRPDQPE 312

Query:   302 CSNYSMYGICKFGPTCRFDHPYAGYPINYG 331
             C  +   G CKFG +CR+ HP    P   G
Sbjct:   313 CQYFMRTGDCKFGSSCRYHHPVDAVPPKTG 342

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 106/301 (35%), Positives = 149/301 (49%)

Query:    44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY-AAQGAQYREELPERNGQPDCGYYLKTG 102
             YP RPGEPDC +Y +T  C YGS C+FNHP   AA   + ++ LPER  +P C +Y+KTG
Sbjct:   222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTG 281

Query:   103 TCKYGSTCKYHHPKD---RNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH 159
              CK+G +CK+HHPKD    + +  +  ++ GL    D  + P+   T +        +H+
Sbjct:   282 KCKFGLSCKFHHPKDIQLPSSSQDIGSSV-GLTSEPDATNNPHVTFTPAL-------YHN 333

Query:   160 PQ--PSSLGTA-LPL---TGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYM--GNIGPL 211
              +  P   G    P    TG+   G+      P    + A I  A G N  +   N   L
Sbjct:   334 SKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPE---RTAFIPQAAGVNYSLVSSNTANL 390

Query:   212 SPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC 271
             +   +  +   Y +  Q  LG      ++SA+    P+RP Q +C YYM TG CK+G  C
Sbjct:   391 NLGLVTPATSFYQTLTQPTLG------VISAT---YPQRPGQSECDYYMKTGECKFGERC 441

Query:   272 KFHHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 324
             KFHHP +R++       Q     +   G P R G   C  Y   G CK+G TC+FDHP  
Sbjct:   442 KFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPP 501

Query:   325 G 325
             G
Sbjct:   502 G 502

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 110/332 (33%), Positives = 164/332 (49%)

Query:     4 NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQA-SPYPARPGEPDCLFYRRTGLC 62
             N  + SNAV   + +  EE   R   +   +G    ++ + YP RPG  DC FY RTG C
Sbjct:    67 NGGLDSNAVVTINQEEEEEEEDR-DGYGYGDGWSENESENVYPVRPGAEDCSFYMRTGSC 125

Query:    63 GYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
              +GS+C+FNHP       A+  + RE+  +  + G  DC YY +TG CKYG TC+++H  
Sbjct:   126 KFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTI 185

Query:   117 DRNG-AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALP-LTG 173
              ++G A     N LGLP+R  E  CPYYMR GSCK+G  CKF+HP P+++G T  P   G
Sbjct:   186 PKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRG 245

Query:   174 NASLGSMGSSVLPSSGLQYAGIVPAPGWNT--YMGNIGPLSPTSIAGSNLIYSSRNQGDL 231
             N  + S+G+   P +  Q +    +  W++  ++    P  P  ++ ++ + S   + + 
Sbjct:   246 NNGV-SIGT-FSPKATFQAS----STSWSSPRHVNGTSPFIPVMLSQTHGVTSQNPEWN- 298

Query:   232 GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC-KFHHPKERIAQSAASNIGP 290
               G Q  + S S + +      P   Y MN  + +      ++ H      Q  A     
Sbjct:   299 --GYQASVYS-SERGV----FSPSTTYLMNNSSAETSMLLSQYRH------QMPAEEF-- 343

Query:   291 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
                P RP Q  CS Y   G CKF   C++ HP
Sbjct:   344 ---PERPDQPECSYYMKTGDCKFKFNCKYHHP 372

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query:   243 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 302
             S +  PERP +P+C YY+ TG C    +CK+HHPK          +   GLP RPGQAIC
Sbjct:     2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61

Query:   303 SNYSMYGICKFGPTCRFDH 321
              +YS +GIC+ GPTC+FDH
Sbjct:    62 PHYSRFGICRSGPTCKFDH 80

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2013763 AT1G29570 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/53 (50%), Positives = 34/53 (64%)

Query:    40 QASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR--EELPERN 90
             Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP    Q    R  + + +RN
Sbjct:    48 QSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRN 100

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AD9	C3H3_ARATH	3, ., 1, ., -, ., -	0.4669	0.8708	0.9009	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	418
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-08
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	5e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	6e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	9e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	2e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	4e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.003

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 251 PDQPDCRYYMNTGTCKYGADCKFHHPK 277
                CR++  TGTCKYG  CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 140 CPYYMRTGSCKFGVACKFHHPQ 161
           C ++ RTG+CK+G  CKF H Q
Sbjct: 6   CRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 91  GQPDCGYYLKTGTCKYGSTCKYHHPK 116
               C ++ +TGTCKYG  CK+ H +
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 297 PGQAICSNYSMYGICKFGPTCRFDHP 322
               +C  +S  G CK+G  C+F H 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73
               C F+ RTG C YG  C+F H 
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 253 QPDCRYYMNTGTCKYGADCKFHHPK 277
              C+++   G C  G  CKF HP 
Sbjct: 4   TELCKFFK-RGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 89  RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
           +     C ++ K G C  G  CK+ HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 296 RPGQAICSNYSMYGICKFGPTCRFDHPY 323
           +    +C  +   G C  G  C+F HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	418
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.86
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.59
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.55
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.52
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.51
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	99.34
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.25
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.13
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.02
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	99.01
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.73
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.6
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.41
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.33
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.31
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.21
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.17
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.0
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	97.72
smart00356	27	ZnF_C3H1 zinc finger.	97.72
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.67
smart00356	27	ZnF_C3H1 zinc finger.	97.63
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.34
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.3
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.02
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	96.88
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.68
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.14
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.14
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.14
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.12
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.09
COG5152	259	Uncharacterized conserved protein, contains RING a	95.04
COG5152	259	Uncharacterized conserved protein, contains RING a	94.6
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	90.96
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	90.68
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	89.48
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	88.84
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	86.17
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	85.74
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	83.07

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.86  E-value=3.3e-21  Score=193.29  Aligned_cols=243  Identities=36%  Similarity=0.688  Sum_probs=155.0

Q ss_pred             CCCCCCCCCCCCCccccccCCCCCCCCCCCCCcc-ccc-ccc--cccccCCCCccccccccccccccCCC-CCCCCCCCC
Q 014805           41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAA-QGA--QYREELPERNGQPDCGYYLKTGTCKY-GSTCKYHHP  115 (418)
Q Consensus        41 ~~~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~-~~~-~~~--~~~~~~per~~~~~Ck~flktG~Ck~-G~~Crf~H~  115 (418)
                      ...|+++....+|.+|.+++.|.++..|+|.|+. ... ...  ......+++.++++|++|.++|.|+| |++|+|.|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~  156 (332)
T KOG1677|consen   77 SSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHG  156 (332)
T ss_pred             cCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCC
Confidence            3468999988999999999999999999999996 322 222  35567789999999999999999999 999999999


Q ss_pred             CCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCC------CCCCCCCCCCCccCCCC
Q 014805          116 KDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLT------GNASLGSMGSSVLPSSG  189 (418)
Q Consensus       116 ~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~------~~~~~~~~~~~~~pss~  189 (418)
                      ..+..... .++..+.+.++++++|.+|+++|.|+||.+|+|.|+............      ....++    ....-+.
T Consensus       157 ~~e~r~~~-~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  231 (332)
T KOG1677|consen  157 LEELRLPS-SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRHPYPVSRNPQPQSYG----LTASRSS  231 (332)
T ss_pred             cccccccc-cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccCCccccccccccccc----hhhcchh
Confidence            87654221 456677888999999999999999999999999999875321110000      000000    0000000


Q ss_pred             C-cc-ccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCC
Q 014805          190 L-QY-AGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY  267 (418)
Q Consensus       190 ~-p~-~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~  267 (418)
                      + .. ..+--...|..-...+-|..+...+..........     ...-........+.+++++.+++|.+ +++|    
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~----  301 (332)
T KOG1677|consen  232 LLNQQSKLQQPFAPSGLSESVLPRSSQQNLLPQGLRSSSS-----SHPSGSQENVNENGFRARPEQPECRS-MKSG----  301 (332)
T ss_pred             hccccccccccccccccccccCcCCccccccccccccccc-----cccccchhccccccCcCCCCCCccch-hccc----
Confidence            0 00 00000000100000011111100011110000000     00001122345778999999999999 9988    


Q ss_pred             CCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCC
Q 014805          268 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRF  319 (418)
Q Consensus       268 G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f  319 (418)
                               ...+            ++++++...|..|.++|+|+||..|+|
T Consensus       302 ---------~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (332)
T KOG1677|consen  302 ---------ENRL------------LPLRPGPGACTLFSRYGSCKFGPLCKF  332 (332)
T ss_pred             ---------cccc------------cCCCCCcccccccccccccCCCCcCCC
Confidence                     1111            778999999999999999999999987

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.59  E-value=1.3e-15  Score=152.87  Aligned_cols=80  Identities=34%  Similarity=0.774  Sum_probs=69.9

Q ss_pred             CCCCCCCCCccchhhHhcCcCCC-CCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014805          245 QNLPERPDQPDCRYYMNTGTCKY-GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY  323 (418)
Q Consensus       245 ~~~Per~k~~~C~~f~~~G~C~~-G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~  323 (418)
                      ...++++++++|++|++.|.|+| |+.|+|+|+.++++...  .+..++++.++|+++|.+|.++|.|+||.+|+|.|+.
T Consensus       124 ~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~  201 (332)
T KOG1677|consen  124 ERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE  201 (332)
T ss_pred             ccCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence            35678899999999999999999 99999999999988432  2334568899999999999999999999999999998


Q ss_pred             CCC
Q 014805          324 AGY  326 (418)
Q Consensus       324 ~~~  326 (418)
                      ...
T Consensus       202 ~~~  204 (332)
T KOG1677|consen  202 PED  204 (332)
T ss_pred             ccc
Confidence            744

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.55  E-value=2.1e-15  Score=141.86  Aligned_cols=132  Identities=31%  Similarity=0.806  Sum_probs=111.0

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCcee
Q 014805           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF  126 (418)
Q Consensus        47 Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~  126 (418)
                      .|....|+||..+|.|.+|..|+|.|...+.               .+|..|+. |.|.+.+.|..+|..+.        
T Consensus       203 spsavycryynangicgkgaacrfvheptrk---------------ticpkfln-grcnkaedcnlsheldp--------  258 (377)
T KOG1492|consen  203 SPSAVYCRYYNANGICGKGAACRFVHEPTRK---------------TICPKFLN-GRCNKAEDCNLSHELDP--------  258 (377)
T ss_pred             CCceeEEEEecCCCcccCCceeeeecccccc---------------ccChHHhc-CccCchhcCCcccccCc--------
Confidence            4566789999989999999999999998763               36999998 99999999999998763        


Q ss_pred             cccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCC
Q 014805          127 NILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMG  206 (418)
Q Consensus       127 ~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~  206 (418)
                              .+.+.|+||+ .|.|. ..+|||.|....                                           
T Consensus       259 --------rripacryfl-lgkcn-npncryvhihys-------------------------------------------  285 (377)
T KOG1492|consen  259 --------RRIPACRYFL-LGKCN-NPNCRYVHIHYS-------------------------------------------  285 (377)
T ss_pred             --------cccchhhhhh-hccCC-CCCceEEEEeec-------------------------------------------
Confidence                    2456899999 69997 589999998431                                           


Q ss_pred             CCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccc
Q 014805          207 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS  286 (418)
Q Consensus       207 ~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~  286 (418)
                                                                  ...+.|..|.+.|+|..|..|+-.|           
T Consensus       286 --------------------------------------------enapicfefakygfcelgtscknqh-----------  310 (377)
T KOG1492|consen  286 --------------------------------------------ENAPICFEFAKYGFCELGTSCKNQH-----------  310 (377)
T ss_pred             --------------------------------------------CCCceeeeehhcceeccccccccce-----------
Confidence                                                        1235699999999999999999999           


Q ss_pred             cCCCCCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014805          287 NIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY  323 (418)
Q Consensus       287 ~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~  323 (418)
                                  ...|.+|...|.|. .+.|.+.|..
T Consensus       311 ------------ilqctdyamfgscn-npqcslyhga  334 (377)
T KOG1492|consen  311 ------------ILQCTDYAMFGSCN-NPQCSLYHGA  334 (377)
T ss_pred             ------------eeeecchhhhcCCC-CCcceeecce
Confidence                        34799999999997 7899998874

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.52  E-value=1.5e-14  Score=144.69  Aligned_cols=144  Identities=29%  Similarity=0.739  Sum_probs=117.7

Q ss_pred             CCCCCCCCcccccc-CCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCc
Q 014805           46 ARPGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV  124 (418)
Q Consensus        46 ~Rp~~~~C~~f~rt-G~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v  124 (418)
                      +|-+...|.++.+. -.|.+|..|.+.|.....           ..+..+|+||++ |.|+.||.|.|+|..+.      
T Consensus        41 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~vcK~~l~-glC~kgD~C~Flhe~~~------  102 (325)
T KOG1040|consen   41 DESGRATCEFNESREKPCERGPICPKSHNDVSD-----------SRGKVVCKHWLR-GLCKKGDQCEFLHEYDL------  102 (325)
T ss_pred             cccccchhcccccCCCCccCCCCCccccCCccc-----------cCCceeehhhhh-hhhhccCcCcchhhhhh------
Confidence            44456789888732 358899999999987531           125678999999 99999999999998742      


Q ss_pred             eecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCC
Q 014805          125 SFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTY  204 (418)
Q Consensus       125 ~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y  204 (418)
                                .+.++|.||...|.|.+|.+|.|.|..+..                                        
T Consensus       103 ----------~k~rec~ff~~~g~c~~~~~c~y~h~dpqt----------------------------------------  132 (325)
T KOG1040|consen  103 ----------TKMRECKFFSLFGECTNGKDCPYLHGDPQT----------------------------------------  132 (325)
T ss_pred             ----------cccccccccccccccccccCCcccCCChhh----------------------------------------
Confidence                      145689999999999999999999996420                                        


Q ss_pred             CCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcc
Q 014805          205 MGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSA  284 (418)
Q Consensus       205 ~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~  284 (418)
                                                                     +..+|.+|.+ |+|+.|++|++.|-..      
T Consensus       133 -----------------------------------------------~~k~c~~~~~-g~c~~g~~c~~~h~~~------  158 (325)
T KOG1040|consen  133 -----------------------------------------------AIKKCKWYKE-GFCRGGPSCKKRHERK------  158 (325)
T ss_pred             -----------------------------------------------hhhccchhhh-ccCCCcchhhhhhhcc------
Confidence                                                           2356999998 9999999999999432      


Q ss_pred             cccCCCCCCCCCCCccccccccccccCCCCCC-CCCCCCCCCCC
Q 014805          285 ASNIGPLGLPSRPGQAICSNYSMYGICKFGPT-CRFDHPYAGYP  327 (418)
Q Consensus       285 ~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~-C~f~Hp~~~~~  327 (418)
                                     .+|..|.. |+|+.|.. |.+.|+...++
T Consensus       159 ---------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~~  186 (325)
T KOG1040|consen  159 ---------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQP  186 (325)
T ss_pred             ---------------cCCCchhh-hhccCCCCcccccCCCCCCC
Confidence                           58999999 99999999 99999987764

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.51  E-value=1.2e-14  Score=145.41  Aligned_cols=154  Identities=24%  Similarity=0.419  Sum_probs=126.0

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCce
Q 014805           46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVS  125 (418)
Q Consensus        46 ~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~  125 (418)
                      +..++.+|+||+| |.|..||.|.|+|..+..             +.+.|.||..+|.|..+.+|.|.|....       
T Consensus        73 ~~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~-------------k~rec~ff~~~g~c~~~~~c~y~h~dpq-------  131 (325)
T KOG1040|consen   73 DSRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT-------------KMRECKFFSLFGECTNGKDCPYLHGDPQ-------  131 (325)
T ss_pred             ccCCceeehhhhh-hhhhccCcCcchhhhhhc-------------ccccccccccccccccccCCcccCCChh-------
Confidence            4678899999997 999999999999998543             3457999999999999999999998731       


Q ss_pred             ecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCC
Q 014805          126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYM  205 (418)
Q Consensus       126 ~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~  205 (418)
                               ...+.|.+|. .|+|+.|..|++.|...                                           
T Consensus       132 ---------t~~k~c~~~~-~g~c~~g~~c~~~h~~~-------------------------------------------  158 (325)
T KOG1040|consen  132 ---------TAIKKCKWYK-EGFCRGGPSCKKRHERK-------------------------------------------  158 (325)
T ss_pred             ---------hhhhccchhh-hccCCCcchhhhhhhcc-------------------------------------------
Confidence                     1356899999 59999999999999943                                           


Q ss_pred             CCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCCC-cccCCCchhhhhcc
Q 014805          206 GNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSA  284 (418)
Q Consensus       206 ~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~~-C~f~H~~~~~~~~~  284 (418)
                                                                      +.|..|.. |+|+.|.. |.+.|+...+....
T Consensus       159 ------------------------------------------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~~~~~  189 (325)
T KOG1040|consen  159 ------------------------------------------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQPPFH  189 (325)
T ss_pred             ------------------------------------------------cCCCchhh-hhccCCCCcccccCCCCCCChhh
Confidence                                                            22666766 99999999 99999887665543


Q ss_pred             cccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014805          285 ASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  325 (418)
Q Consensus       285 ~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~  325 (418)
                      .  ......+.+.+..++..|.. ..+.....|.+.+....
T Consensus       190 ~--~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~  227 (325)
T KOG1040|consen  190 Q--GSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHE  227 (325)
T ss_pred             c--cccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHH
Confidence            2  34445667888889999999 99999999999888643

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=99.34  E-value=1.3e-12  Score=128.99  Aligned_cols=200  Identities=25%  Similarity=0.479  Sum_probs=115.9

Q ss_pred             CCCccccccCCCCCCCC-CCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCc-----
Q 014805           51 PDCLFYRRTGLCGYGSN-CRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV-----  124 (418)
Q Consensus        51 ~~C~~f~rtG~C~~G~~-C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v-----  124 (418)
                      ++|+.|+| |+|.+||+ |||+|+......        +..+...|.+|++ |.|. .++|||+|........-.     
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V--------~~g~v~aC~Ds~k-grCs-R~nCkylHpp~hlkdql~ingrn  106 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQV--------SNGRVIACFDSQK-GRCS-RENCKYLHPPQHLKDQLKINGRN  106 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCCc--------cCCeEEEEecccc-CccC-cccceecCCChhhhhhhhhcccc
Confidence            58999998 99999998 999999764322        2234578999999 9998 789999998765432110     


Q ss_pred             --eecc------cCCCCccCCCCcc--CcCCCCCCCCCC-CccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccc
Q 014805          125 --SFNI------LGLPMRQDEKSCP--YYMRTGSCKFGV-ACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYA  193 (418)
Q Consensus       125 --~~~~------~g~P~r~~~~~C~--~f~k~G~C~~G~-~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~  193 (418)
                        .+..      .........++|.  .|. .+.|.-|. .|+|.|......|..+                        
T Consensus       107 ~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~~~Pg~~v------------------------  161 (331)
T KOG2494|consen  107 NLILQKTAAAMLAQQMQGPGTPICSVPMFA-TGPCLGGNTACSYWPYLPPVPGGLV------------------------  161 (331)
T ss_pred             cHHHHHHHHhhhcccccCCCcccccccccc-ccccccCCCccccccccCCCCCCCC------------------------
Confidence              0000      0001112455666  555 46665554 4777776542111111                        


Q ss_pred             cccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCC-Ccc
Q 014805          194 GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA-DCK  272 (418)
Q Consensus       194 ~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~-~C~  272 (418)
                                         ++.++...++|..........+      ....+......+.++|+- . .|.|..++ +|+
T Consensus       162 -------------------p~~~~p~~~~~~~g~p~v~~~~------~~~~~k~~r~~~~e~~~~-~-~gn~~r~e~d~~  214 (331)
T KOG2494|consen  162 -------------------PADGLPTTPVFVPGGPGVPGPG------LVGGQKLLRSDRLEVCRE-Q-RGNCRRGEQDAQ  214 (331)
T ss_pred             -------------------CCcCCCCCccccCCCCcccccc------cccccccccCCCCCCCcc-c-ccccccchhHHH
Confidence                               1111111111111111000000      001112223345567777 3 48899887 599


Q ss_pred             cCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014805          273 FHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  325 (418)
Q Consensus       273 f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~  325 (418)
                      |+|+.+.+.....          .....+|..|.+ |.|. -++|++.|....
T Consensus       215 f~~~~k~~~~~s~----------~~t~~~~~~~t~-~~~~-~en~~~~~~~~h  255 (331)
T KOG2494|consen  215 FAHPAKSIMIDSN----------DNTVEVCLRYTK-GRCE-TENCKYFHAPAH  255 (331)
T ss_pred             HhhhhhhhhcccC----------CCcchhcccccc-ceec-hhcccccCchHH
Confidence            9998877664432          233668999998 9997 678999998654

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.25  E-value=6.6e-12  Score=118.44  Aligned_cols=114  Identities=26%  Similarity=0.760  Sum_probs=95.0

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 014805           91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP  170 (418)
Q Consensus        91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p  170 (418)
                      ...-|+||...|.|-+|..|||.|...                  +..+|+.|+ +|.|...++|.+.|..+..      
T Consensus       205 savycryynangicgkgaacrfvhept------------------rkticpkfl-ngrcnkaedcnlsheldpr------  259 (377)
T KOG1492|consen  205 SAVYCRYYNANGICGKGAACRFVHEPT------------------RKTICPKFL-NGRCNKAEDCNLSHELDPR------  259 (377)
T ss_pred             ceeEEEEecCCCcccCCceeeeecccc------------------ccccChHHh-cCccCchhcCCcccccCcc------
Confidence            345799999999999999999999865                  356999999 6999999999999985420      


Q ss_pred             CCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCC
Q 014805          171 LTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPER  250 (418)
Q Consensus       171 ~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per  250 (418)
                                                                                                      
T Consensus       260 --------------------------------------------------------------------------------  259 (377)
T KOG1492|consen  260 --------------------------------------------------------------------------------  259 (377)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCC
Q 014805          251 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN  329 (418)
Q Consensus       251 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~~~~  329 (418)
                       ..+.||||+- |.|. .++|+|.|...                 ...+.+|..|.++|+|..|..|+-.|-+...-|.
T Consensus       260 -ripacryfll-gkcn-npncryvhihy-----------------senapicfefakygfcelgtscknqhilqctdya  318 (377)
T KOG1492|consen  260 -RIPACRYFLL-GKCN-NPNCRYVHIHY-----------------SENAPICFEFAKYGFCELGTSCKNQHILQCTDYA  318 (377)
T ss_pred             -ccchhhhhhh-ccCC-CCCceEEEEee-----------------cCCCceeeeehhcceeccccccccceeeeecchh
Confidence             2345999998 9997 78999999432                 2236799999999999999999999998777664

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.13  E-value=2.4e-10  Score=111.80  Aligned_cols=193  Identities=16%  Similarity=0.250  Sum_probs=132.9

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCC-C---
Q 014805           48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG-P---  123 (418)
Q Consensus        48 p~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~-~---  123 (418)
                      ++++.|+.-...+.|++++.|.|+|......-    ...+.+.++.-|..|+.-|.|.++.+|-|.|-.-...+. +   
T Consensus       113 ~kt~~l~ss~~~~~~~~p~~n~fahs~~issl----~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~  188 (351)
T COG5063         113 YKTEMLRSSTEIPYCRYPDKNPFAHSKAISSL----AQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQ  188 (351)
T ss_pred             ccchhhhccccccccccCCCCcCCCccccccc----cccCccccccceeEEecCCccccccccccccccccccCcchhhc
Confidence            34667776544489999999999999765321    223345567789999999999999999998855322110 0   


Q ss_pred             -------------ceecccCCC--------------CccC-CCCccCcCCCCCCCC---CCCccCC---CCCCCCCCCCC
Q 014805          124 -------------VSFNILGLP--------------MRQD-EKSCPYYMRTGSCKF---GVACKFH---HPQPSSLGTAL  169 (418)
Q Consensus       124 -------------v~~~~~g~P--------------~r~~-~~~C~~f~k~G~C~~---G~~Crf~---H~~~~~~~~~~  169 (418)
                                   ...+....|              ++.. ..+|.-|...|.|++   |+.|.|+   |......    
T Consensus       189 rkpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~----  264 (351)
T COG5063         189 RKPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELK----  264 (351)
T ss_pred             cCcccCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccc----
Confidence                         001111111              1111 257999998999999   9999999   8843210    


Q ss_pred             CCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCC
Q 014805          170 PLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPE  249 (418)
Q Consensus       170 p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Pe  249 (418)
                                                                                                ....-.
T Consensus       265 --------------------------------------------------------------------------~k~k~~  270 (351)
T COG5063         265 --------------------------------------------------------------------------SKKKKQ  270 (351)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000111


Q ss_pred             CCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCC
Q 014805          250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI  328 (418)
Q Consensus       250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~~~  328 (418)
                      -+++..|..|.+.|+|+||..|.|.|+-++......      ..-+.+...+|+.++++|.|++|-+|.|.|....+-.
T Consensus       271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~------~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~  343 (351)
T COG5063         271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE------EASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDF  343 (351)
T ss_pred             ccccCCccchhhcccCccccccccccCChhhccccc------cccccccccccccccccCccCCCCchhhccccchhhh
Confidence            257888999999999999999999999876543221      1113455679999999999999999999998766543

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.02  E-value=6.5e-10  Score=108.78  Aligned_cols=179  Identities=20%  Similarity=0.321  Sum_probs=112.7

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 014805           91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP  170 (418)
Q Consensus        91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p  170 (418)
                      ++++|+.-..-+.|.+++.|.|+|.......       ...+.+.+++.|..|+..|.|+++.+|-|.|..-.... ..+
T Consensus       114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl-------~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~-~q~  185 (351)
T COG5063         114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSL-------AQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDIN-LQP  185 (351)
T ss_pred             cchhhhccccccccccCCCCcCCCccccccc-------cccCccccccceeEEecCCccccccccccccccccccC-cch
Confidence            5567776544488999999999998753221       12344667788999998999999999999987443211 001


Q ss_pred             CCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCC
Q 014805          171 LTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPER  250 (418)
Q Consensus       171 ~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per  250 (418)
                                .++.-|.++.           +++..         +++-+.    ...+.-     ......+++..+.+
T Consensus       186 ----------l~~rkpks~~-----------~~~s~---------t~~kes----~a~P~~-----~~~~~~~e~n~~L~  226 (351)
T COG5063         186 ----------LSQRKPKSGK-----------NCTSY---------TLGKES----DAHPHD-----ELIYQKQEQNKPLY  226 (351)
T ss_pred             ----------hhccCcccCc-----------Ccccc---------cccccc----ccCchh-----hhhhhhhhccchhh
Confidence                      1111111110           00000         000000    000000     00000123333333


Q ss_pred             CCC--ccchhhHhcCcCCC---CCCcccC---CCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014805          251 PDQ--PDCRYYMNTGTCKY---GADCKFH---HPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP  322 (418)
Q Consensus       251 ~k~--~~C~~f~~~G~C~~---G~~C~f~---H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp  322 (418)
                       ++  .+|.-|...|.|++   |..|+|+   |+..++..        .+.-..+++++|.+|..-|+|+||.+|.|.|.
T Consensus       227 -kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~--------k~k~~~frTePcinwe~sGyc~yg~Rc~F~hg  297 (351)
T COG5063         227 -KTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS--------KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHG  297 (351)
T ss_pred             -cCCHHHhhccCcCCCCccccccccccccccccccccccc--------cccccccccCCccchhhcccCccccccccccC
Confidence             44  78999999999999   9999999   98665443        34556788999999999999999999999999


Q ss_pred             CCC
Q 014805          323 YAG  325 (418)
Q Consensus       323 ~~~  325 (418)
                      ...
T Consensus       298 d~~  300 (351)
T COG5063         298 DDS  300 (351)
T ss_pred             Chh
Confidence            754

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=99.01  E-value=2.9e-09  Score=104.86  Aligned_cols=151  Identities=28%  Similarity=0.600  Sum_probs=113.6

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecc
Q 014805           49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNI  128 (418)
Q Consensus        49 ~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~  128 (418)
                      .+..|.+++-.+.+...-+|++.|......            ...+|++|++ |.|+.+..|.|+|..+...        
T Consensus        73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~~------------s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~--------  131 (285)
T COG5084          73 NTVACISRNFNSIRGSRLSTPNNHVNPVLS------------SSVVCKFFLR-GLCKSGFSCEFLHEYDLRS--------  131 (285)
T ss_pred             cccccccccccCCccccccCCccccCcccc------------CCcccchhcc-ccCcCCCccccccCCCccc--------
Confidence            456799998656666666899999865321            2357999999 9999999999999977321        


Q ss_pred             cCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCC
Q 014805          129 LGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNI  208 (418)
Q Consensus       129 ~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~  208 (418)
                            .....|++|...|.|..|..|.+.|.++...                                           
T Consensus       132 ------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~-------------------------------------------  162 (285)
T COG5084         132 ------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDSF-------------------------------------------  162 (285)
T ss_pred             ------ccCCCcccccccceeccCCCCCccccCcccc-------------------------------------------
Confidence                  1256899996679999999999999974310                                           


Q ss_pred             CCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHh--cCcCCCCCCcccCCCchhhhhcccc
Q 014805          209 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN--TGTCKYGADCKFHHPKERIAQSAAS  286 (418)
Q Consensus       209 ~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~--~G~C~~G~~C~f~H~~~~~~~~~~~  286 (418)
                                                                  ...|.+|.+  .++|+.|..|++.|....+      
T Consensus       163 --------------------------------------------~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~------  192 (285)
T COG5084         163 --------------------------------------------AGNCDQYSGATYGFCPLGASCKFSHTLKRV------  192 (285)
T ss_pred             --------------------------------------------cccccccCcccccccCCCCccccccccccc------
Confidence                                                        112444442  5999999999999965322      


Q ss_pred             cCCCCCCCCCCCccccccccccccCCCCCC--------------CCCCCCCCCCCCC
Q 014805          287 NIGPLGLPSRPGQAICSNYSMYGICKFGPT--------------CRFDHPYAGYPIN  329 (418)
Q Consensus       287 ~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~--------------C~f~Hp~~~~~~~  329 (418)
                               .+...+|..|.. ++|+-|..              |++.||......+
T Consensus       193 ---------~~~~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~~~iq  239 (285)
T COG5084         193 ---------SYGSSPCGNYTP-PFSPPGTPSESVSSWGYGKGTSCSLSHPSLNIDIQ  239 (285)
T ss_pred             ---------cccccccccCcC-CcCCCCCCccccccccccccccccCCCccccCCcC
Confidence                     233448999999 99999998              9999998766543

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.73  E-value=2.1e-08  Score=98.88  Aligned_cols=88  Identities=31%  Similarity=0.680  Sum_probs=72.2

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceec
Q 014805           48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN  127 (418)
Q Consensus        48 p~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~  127 (418)
                      ...++|++|++ |.|+.|..|.|+|..+....           ..+.|++|...|.|..|..|.|.|.....        
T Consensus       102 ~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s-----------~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~--------  161 (285)
T COG5084         102 SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS-----------QGPPCRSFSLKGSCSSGPSCGYSHIDPDS--------  161 (285)
T ss_pred             cCCcccchhcc-ccCcCCCccccccCCCcccc-----------cCCCcccccccceeccCCCCCccccCccc--------
Confidence            45689999997 99999999999999886421           14579999555999999999999986421        


Q ss_pred             ccCCCCccCCCCccCcCC--CCCCCCCCCccCCCCCCC
Q 014805          128 ILGLPMRQDEKSCPYYMR--TGSCKFGVACKFHHPQPS  163 (418)
Q Consensus       128 ~~g~P~r~~~~~C~~f~k--~G~C~~G~~Crf~H~~~~  163 (418)
                              ....|.+|.+  .++|++|..|+|.|....
T Consensus       162 --------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~  191 (285)
T COG5084         162 --------FAGNCDQYSGATYGFCPLGASCKFSHTLKR  191 (285)
T ss_pred             --------ccccccccCcccccccCCCCcccccccccc
Confidence                    3457888885  699999999999999753

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.60  E-value=3.5e-07  Score=95.91  Aligned_cols=58  Identities=24%  Similarity=0.556  Sum_probs=50.0

Q ss_pred             ccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 014805          254 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  326 (418)
Q Consensus       254 ~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~  326 (418)
                      ..|..|.+ |.|+.|+.|.|+|+.-|-.      |+|    -+|+++.|++-   |+|+. .-|-|+|-..+|
T Consensus       237 tpCPefrk-G~C~rGD~CEyaHgvfEcw------LHP----a~YRT~~CkDg---~~C~R-rvCfFAH~~eqL  294 (528)
T KOG1595|consen  237 TPCPEFRK-GSCERGDSCEYAHGVFECW------LHP----ARYRTRKCKDG---GYCPR-RVCFFAHSPEQL  294 (528)
T ss_pred             ccCccccc-CCCCCCCccccccceehhh------cCH----HHhccccccCC---CCCcc-ceEeeecChHHh
Confidence            45999999 9999999999999886643      444    48999999998   89997 889999998877

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=2.1e-07  Score=95.95  Aligned_cols=82  Identities=26%  Similarity=0.693  Sum_probs=62.6

Q ss_pred             CCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecccC
Q 014805           51 PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG  130 (418)
Q Consensus        51 ~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g  130 (418)
                      ++|.||+ ...|++++.|.|.|-.....            ...+|++|+..-.|+  +.|+|.|..-..           
T Consensus         4 ~dcyff~-ys~cKk~d~c~~rh~E~al~------------n~t~C~~w~~~~~C~--k~C~YRHSe~~~-----------   57 (667)
T KOG4791|consen    4 EDCYFFF-YSTCKKGDSCPFRHCEAALG------------NETVCTLWQEGRCCR--KVCRYRHSEIDK-----------   57 (667)
T ss_pred             ccchhhh-hhhhhccCcCcchhhHHHhc------------CcchhhhhhhcCccc--ccccchhhHHhh-----------
Confidence            5799999 59999999999999976531            234799999844566  489999985421           


Q ss_pred             CCCccCCCCccCcCCCCC-CCCCCCccCCCCCCC
Q 014805          131 LPMRQDEKSCPYYMRTGS-CKFGVACKFHHPQPS  163 (418)
Q Consensus       131 ~P~r~~~~~C~~f~k~G~-C~~G~~Crf~H~~~~  163 (418)
                         ......|.++.+ +. |. .++|-|.|..+.
T Consensus        58 ---kr~e~~CYwe~~-p~gC~-k~~CgfRH~~pP   86 (667)
T KOG4791|consen   58 ---KRSEIPCYWENQ-PTGCQ-KLNCGFRHNRPP   86 (667)
T ss_pred             ---hcCcccceeecC-CCccC-CCccccccCCCc
Confidence               124568999995 66 98 589999997643

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.33  E-value=1.2e-07  Score=61.43  Aligned_cols=27  Identities=41%  Similarity=0.907  Sum_probs=21.9

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCcc
Q 014805           48 PGEPDCLFYRRTGLCGYGSNCRFNHPA   74 (418)
Q Consensus        48 p~~~~C~~f~rtG~C~~G~~C~F~H~~   74 (418)
                      +++++|++|+++|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            578999999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.31  E-value=2.8e-07  Score=59.74  Aligned_cols=27  Identities=41%  Similarity=1.038  Sum_probs=21.8

Q ss_pred             CCCccchhhHhcCcCCCCCCcccCCCc
Q 014805          251 PDQPDCRYYMNTGTCKYGADCKFHHPK  277 (418)
Q Consensus       251 ~k~~~C~~f~~~G~C~~G~~C~f~H~~  277 (418)
                      +++.+|++|+++|.|++|++|+|+|++
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            478899999999999999999999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=4.7e-07  Score=93.41  Aligned_cols=128  Identities=18%  Similarity=0.428  Sum_probs=86.8

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 014805           92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPL  171 (418)
Q Consensus        92 ~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~  171 (418)
                      .+.|.||+. -.|++++.|.|.|......               ....|.+|+..--|+  +.|+|.|.+....      
T Consensus         3 ~~dcyff~y-s~cKk~d~c~~rh~E~al~---------------n~t~C~~w~~~~~C~--k~C~YRHSe~~~k------   58 (667)
T KOG4791|consen    3 GEDCYFFFY-STCKKGDSCPFRHCEAALG---------------NETVCTLWQEGRCCR--KVCRYRHSEIDKK------   58 (667)
T ss_pred             cccchhhhh-hhhhccCcCcchhhHHHhc---------------CcchhhhhhhcCccc--ccccchhhHHhhh------
Confidence            357999998 9999999999999876432               245899999644455  4999999964311      


Q ss_pred             CCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCC
Q 014805          172 TGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERP  251 (418)
Q Consensus       172 ~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~  251 (418)
                                                                                                     -
T Consensus        59 -------------------------------------------------------------------------------r   59 (667)
T KOG4791|consen   59 -------------------------------------------------------------------------------R   59 (667)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             CCccchhhHhcCc-CCCCCCcccCCCc---hhhhhccc----ccCCCCCC--C---CCCCccccccccccccCCCCCCCC
Q 014805          252 DQPDCRYYMNTGT-CKYGADCKFHHPK---ERIAQSAA----SNIGPLGL--P---SRPGQAICSNYSMYGICKFGPTCR  318 (418)
Q Consensus       252 k~~~C~~f~~~G~-C~~G~~C~f~H~~---~~~~~~~~----~~~~p~~l--p---~r~~~~~C~~y~~~G~C~~G~~C~  318 (418)
                      ...+|.|+.+ +. |. .++|-|.|-.   ..+.....    ..+++..+  +   +.---.+|-+|.+ |+|..|+.|.
T Consensus        60 ~e~~CYwe~~-p~gC~-k~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~p~P~l~~~K-~~e~~~D~~s  136 (667)
T KOG4791|consen   60 SEIPCYWENQ-PTGCQ-KLNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSNPSPQLRSVK-KVESSEDVPS  136 (667)
T ss_pred             CcccceeecC-CCccC-CCccccccCCCchhhhccCCCCCcccccccccccCCCcccccCCchHHHHhh-hhhhhccccc
Confidence            2356999998 66 97 6899999932   22221110    11111111  0   1111358999999 9999999999


Q ss_pred             CCCCCCC
Q 014805          319 FDHPYAG  325 (418)
Q Consensus       319 f~Hp~~~  325 (418)
                      |.|+...
T Consensus       137 ~Lh~P~A  143 (667)
T KOG4791|consen  137 PLHPPVA  143 (667)
T ss_pred             cCCCCcc
Confidence            9999743

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.17  E-value=6.8e-07  Score=88.84  Aligned_cols=67  Identities=27%  Similarity=0.595  Sum_probs=50.4

Q ss_pred             cccccccccccCCCCCC-CCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 014805           93 PDCGYYLKTGTCKYGST-CKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPL  171 (418)
Q Consensus        93 ~~Ck~flktG~Ck~G~~-Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~  171 (418)
                      .+||.|++ |.|++|+. |||.|+.....+..           -+-..|.+|+| |.|.+ ++|||.|+.+.. .+.+.+
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~~-----------g~v~aC~Ds~k-grCsR-~nCkylHpp~hl-kdql~i  102 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQVSN-----------GRVIACFDSQK-GRCSR-ENCKYLHPPQHL-KDQLKI  102 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCCccC-----------CeEEEEecccc-CccCc-ccceecCCChhh-hhhhhh
Confidence            58999999 99999999 99999987433221           12347999995 99995 789999997653 334555


Q ss_pred             CCC
Q 014805          172 TGN  174 (418)
Q Consensus       172 ~~~  174 (418)
                      ++.
T Consensus       103 ngr  105 (331)
T KOG2494|consen  103 NGR  105 (331)
T ss_pred             ccc
Confidence            544

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.00  E-value=5.1e-06  Score=87.36  Aligned_cols=86  Identities=24%  Similarity=0.467  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCCCCccccc-ccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCC
Q 014805           60 GLCGYGSNCRFNHPAYAA-QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEK  138 (418)
Q Consensus        60 G~C~~G~~C~F~H~~~~~-~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~  138 (418)
                      +.|.-+..|.|+|+.... ...-.+-.|    .-..|..|-+ |.|+.||.|.|.|..-+.         .=.|.++++.
T Consensus       207 ~~shDwteCPf~HpgEkARRRDPRkyhY----s~tpCPefrk-G~C~rGD~CEyaHgvfEc---------wLHPa~YRT~  272 (528)
T KOG1595|consen  207 PRSHDWTECPFAHPGEKARRRDPRKYHY----SSTPCPEFRK-GSCERGDSCEYAHGVFEC---------WLHPARYRTR  272 (528)
T ss_pred             ccCCCcccCCccCCCcccccCCcccccc----cCccCccccc-CCCCCCCccccccceehh---------hcCHHHhccc
Confidence            457778899999975432 111111122    3357999998 999999999999987543         2236688999


Q ss_pred             CccCcCCCCCCCCCCCccCCCCCCC
Q 014805          139 SCPYYMRTGSCKFGVACKFHHPQPS  163 (418)
Q Consensus       139 ~C~~f~k~G~C~~G~~Crf~H~~~~  163 (418)
                      .|++   .|.|++ .-|-|+|....
T Consensus       273 ~CkD---g~~C~R-rvCfFAH~~eq  293 (528)
T KOG1595|consen  273 KCKD---GGYCPR-RVCFFAHSPEQ  293 (528)
T ss_pred             cccC---CCCCcc-ceEeeecChHH
Confidence            9998   589998 89999999764

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=97.72  E-value=7.5e-05  Score=80.24  Aligned_cols=81  Identities=15%  Similarity=0.378  Sum_probs=43.3

Q ss_pred             CCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCC--CCCCceecccCCCCccCCCCccCc
Q 014805           66 SNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN--GAGPVSFNILGLPMRQDEKSCPYY  143 (418)
Q Consensus        66 ~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~--~~~~v~~~~~g~P~r~~~~~C~~f  143 (418)
                      ..|.+.|.......+.       ..-...|+||..   |. +..|.|.|+....  .+.+.  ...+-+.-...+.|.|=
T Consensus       525 ~~s~s~~s~~~~~ltk-------~k~l~~Cky~~~---Ct-~a~Ce~~HPtaa~~~~s~p~--k~fa~~~~ks~p~Ck~~  591 (681)
T KOG3702|consen  525 PDSLSRHSEKKNELTK-------AKILTRCKYGPA---CT-SAECEFAHPTAAENAKSLPN--KKFASKCLKSHPGCKFG  591 (681)
T ss_pred             CcchhhCccccccccc-------ceeeccccCCCc---CC-chhhhhcCCcchhhhhcccc--ccccccceecccccccc
Confidence            3578888865421111       112346999988   98 8999999987641  11110  00000111112345542


Q ss_pred             CCCCCCCCCCCccCCCCCCC
Q 014805          144 MRTGSCKFGVACKFHHPQPS  163 (418)
Q Consensus       144 ~k~G~C~~G~~Crf~H~~~~  163 (418)
                      .   .|. -.+|.|.|....
T Consensus       592 ~---kCt-asDC~~sH~~~~  607 (681)
T KOG3702|consen  592 K---KCT-ASDCNYSHAGRR  607 (681)
T ss_pred             c---ccc-cccCcccccCCC
Confidence            2   365 356889998664

>smart00356 ZnF_C3H1 zinc finger

Probab=97.72  E-value=2.5e-05  Score=49.81  Aligned_cols=26  Identities=38%  Similarity=1.027  Sum_probs=22.7

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCcc
Q 014805           48 PGEPDCLFYRRTGLCGYGSNCRFNHPA   74 (418)
Q Consensus        48 p~~~~C~~f~rtG~C~~G~~C~F~H~~   74 (418)
                      +++.+|++|. +|.|.+|++|+|+|+.
T Consensus         2 ~k~~~C~~~~-~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFK-RGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCcc-CCCCCCCCCcCCCCcC
Confidence            4677999995 6999999999999973

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.67  E-value=7.4e-06  Score=80.37  Aligned_cols=72  Identities=25%  Similarity=0.672  Sum_probs=49.6

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCC-----------------------CCcccccccccccc-
Q 014805           46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELP-----------------------ERNGQPDCGYYLKT-  101 (418)
Q Consensus        46 ~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~p-----------------------er~~~~~Ck~flkt-  101 (418)
                      .-|+..+|.||.. |.|..|+.|+|+|+............|+                       -....++|+||+.. 
T Consensus        88 vDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv  166 (343)
T KOG1763|consen   88 VDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV  166 (343)
T ss_pred             CCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence            4577899999995 9999999999999976532211011111                       11123589999862 


Q ss_pred             -----c---cCCCCC-CCCCCCCCCC
Q 014805          102 -----G---TCKYGS-TCKYHHPKDR  118 (418)
Q Consensus       102 -----G---~Ck~G~-~Crf~H~~~~  118 (418)
                           |   .|.+|. .|-|.|....
T Consensus       167 E~~kYGWfW~CPnGg~~C~YrHaLP~  192 (343)
T KOG1763|consen  167 ENGKYGWFWECPNGGDKCIYRHALPE  192 (343)
T ss_pred             hcCCccceeECCCCCCeeeeeecCCc
Confidence                 2   499874 8999998764

>smart00356 ZnF_C3H1 zinc finger

Probab=97.63  E-value=3.8e-05  Score=48.92  Aligned_cols=26  Identities=31%  Similarity=0.911  Sum_probs=22.4

Q ss_pred             CCccccccccccccCCCCCCCCCCCCC
Q 014805          297 PGQAICSNYSMYGICKFGPTCRFDHPY  323 (418)
Q Consensus       297 ~~~~~C~~y~~~G~C~~G~~C~f~Hp~  323 (418)
                      +++.+|++| .+|.|.+|..|+|.|..
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            457799999 55999999999999973

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.34  E-value=6.3e-05  Score=78.56  Aligned_cols=60  Identities=23%  Similarity=0.614  Sum_probs=46.9

Q ss_pred             cccccccccc--ccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCC
Q 014805           92 QPDCGYYLKT--GTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP  160 (418)
Q Consensus        92 ~~~Ck~flkt--G~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~  160 (418)
                      ..+|.-...+  -.|.||++|+|.|+.+...+..        + ....+.|++|...|+|++|-+|||.-.
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--------~-~Dig~~Cp~f~s~G~Cp~G~~CRFl~a  137 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--------A-PDIGPSCPVFESLGFCPYGFKCRFLGA  137 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHhcc--------C-cccCCccceeeccccCCccceeehhhc
Confidence            3579999885  3799999999999987654332        1 123468999999999999999999643

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.30  E-value=0.00014  Score=76.11  Aligned_cols=60  Identities=30%  Similarity=0.760  Sum_probs=49.7

Q ss_pred             CCccchhhHhc--CcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCC
Q 014805          252 DQPDCRYYMNT--GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH  321 (418)
Q Consensus       252 k~~~C~~f~~~--G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~H  321 (418)
                      ...+|.-....  -.|.||++|+|.|+.+.........|.+          -|..|...|+|+||-+|+|.-
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~----------~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGP----------SCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcccCC----------ccceeeccccCCccceeehhh
Confidence            35689999885  3799999999999987766655555555          799999999999999999953

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.02  E-value=0.00026  Score=69.79  Aligned_cols=78  Identities=27%  Similarity=0.626  Sum_probs=54.0

Q ss_pred             CCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCC-------------------CCCCCCCCcccccccc----
Q 014805          250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP-------------------LGLPSRPGQAICSNYS----  306 (418)
Q Consensus       250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p-------------------~~lp~r~~~~~C~~y~----  306 (418)
                      .|+..+|-+|.. |.|..|+.|+|+|.....+...-..|-+                   -+-|.--...+|.||.    
T Consensus        89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE  167 (343)
T KOG1763|consen   89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE  167 (343)
T ss_pred             CchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence            468899999998 9999999999999876555443222211                   1112222345999996    


Q ss_pred             --cccc---CCCCC-CCCCCCCCCCCCCCCC
Q 014805          307 --MYGI---CKFGP-TCRFDHPYAGYPINYG  331 (418)
Q Consensus       307 --~~G~---C~~G~-~C~f~Hp~~~~~~~~~  331 (418)
                        +||+   |++|- .|.|.|-++   ++|-
T Consensus       168 ~~kYGWfW~CPnGg~~C~YrHaLP---~GyV  195 (343)
T KOG1763|consen  168 NGKYGWFWECPNGGDKCIYRHALP---EGYV  195 (343)
T ss_pred             cCCccceeECCCCCCeeeeeecCC---cchh
Confidence              4564   99987 799999754   5454

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=96.88  E-value=0.0011  Score=71.53  Aligned_cols=79  Identities=14%  Similarity=0.246  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCccccccc--cccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCC
Q 014805           61 LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCG--YYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEK  138 (418)
Q Consensus        61 ~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck--~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~  138 (418)
                      .|..+.+|.|.|+.-+.....         ..+.|.  +-..+-.|. ...|.+.|.........          .....
T Consensus       486 ~~~estrEe~~~~~~r~~~~~---------rk~s~p~i~~~~~~~~s-~~~s~s~~s~~~~~ltk----------~k~l~  545 (681)
T KOG3702|consen  486 PVTESTREEFVPPTLRTGRPL---------RKASQPTIFVANGHGGS-NPDSLSRHSEKKNELTK----------AKILT  545 (681)
T ss_pred             cccccccccccCcccccCCcc---------cccCCCceecccccccC-CCcchhhCccccccccc----------ceeec
Confidence            466778899999965432211         112233  111111244 46689999876433221          11235


Q ss_pred             CccCcCCCCCCCCCCCccCCCCCCC
Q 014805          139 SCPYYMRTGSCKFGVACKFHHPQPS  163 (418)
Q Consensus       139 ~C~~f~k~G~C~~G~~Crf~H~~~~  163 (418)
                      .|.+|..   |. +..|.|+|+...
T Consensus       546 ~Cky~~~---Ct-~a~Ce~~HPtaa  566 (681)
T KOG3702|consen  546 RCKYGPA---CT-SAECEFAHPTAA  566 (681)
T ss_pred             cccCCCc---CC-chhhhhcCCcch
Confidence            7999985   98 899999999654

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.68  E-value=0.00049  Score=66.00  Aligned_cols=73  Identities=26%  Similarity=0.642  Sum_probs=50.1

Q ss_pred             CCCCCCCCCccccccCCCCCCCCCCCCCcccccccc---------cc-cccCC--CCc---cccccccccc---cc----
Q 014805           45 PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA---------QY-REELP--ERN---GQPDCGYYLK---TG----  102 (418)
Q Consensus        45 p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~---------~~-~~~~p--er~---~~~~Ck~flk---tG----  102 (418)
                      -+-|++.+|..|+ .+.|..|+.|+|+|+.......         +. .+..|  +++   ...+|+||+.   +|    
T Consensus        80 gvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw  158 (299)
T COG5252          80 GVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW  158 (299)
T ss_pred             ccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence            3457889999999 5999999999999996543211         10 11122  121   2358999975   22    


Q ss_pred             --cCCCC-CCCCCCCCCCC
Q 014805          103 --TCKYG-STCKYHHPKDR  118 (418)
Q Consensus       103 --~Ck~G-~~Crf~H~~~~  118 (418)
                        .|.+| ..|-|.|....
T Consensus       159 ~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         159 GWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             eeeCCCCCceeeeeeccCc
Confidence              49887 68999998764

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.14  E-value=0.002  Score=61.87  Aligned_cols=78  Identities=32%  Similarity=0.676  Sum_probs=55.1

Q ss_pred             CCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccC----------CCCC-CCCCCCccccccccc------ccc--
Q 014805          250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI----------GPLG-LPSRPGQAICSNYSM------YGI--  310 (418)
Q Consensus       250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~----------~p~~-lp~r~~~~~C~~y~~------~G~--  310 (418)
                      .+++.+|-.|.. +.|..|+.|.|+|+..+.+...-..|          -|++ .|.-..-.+|.||..      ||+  
T Consensus        82 dpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W  160 (299)
T COG5252          82 DPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW  160 (299)
T ss_pred             CchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence            468899999998 99999999999999887775543211          1121 233334569999863      443  


Q ss_pred             -CCCC-CCCCCCCCCCCCCCCCC
Q 014805          311 -CKFG-PTCRFDHPYAGYPINYG  331 (418)
Q Consensus       311 -C~~G-~~C~f~Hp~~~~~~~~~  331 (418)
                       |++| .+|-|.|-+   |++|-
T Consensus       161 ~CPng~~~C~y~H~L---p~GyV  180 (299)
T COG5252         161 TCPNGNMRCSYIHKL---PDGYV  180 (299)
T ss_pred             eCCCCCceeeeeecc---Cccce
Confidence             9998 579999975   45553

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.14  E-value=0.0028  Score=65.06  Aligned_cols=30  Identities=30%  Similarity=1.021  Sum_probs=25.4

Q ss_pred             CCCccccccccccccccCCCCCCCCCCCCCC
Q 014805           87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (418)
Q Consensus        87 per~~~~~Ck~flktG~Ck~G~~Crf~H~~~  117 (418)
                      |.-..+.+|+||+. |.|+|+++|||+|...
T Consensus       135 PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  135 PTHESMKPCKFFLE-GRCRFGENCRFSHGLD  164 (486)
T ss_pred             CcchhhccchHhhc-cccccCcccccccCcc
Confidence            44445678999998 9999999999999875

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.14  E-value=0.0034  Score=37.40  Aligned_cols=19  Identities=47%  Similarity=1.106  Sum_probs=17.1

Q ss_pred             CCccccccCCCCCCCCCCCCCc
Q 014805           52 DCLFYRRTGLCGYGSNCRFNHP   73 (418)
Q Consensus        52 ~C~~f~rtG~C~~G~~C~F~H~   73 (418)
                      .|+||..   |++|++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4999885   999999999996

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.12  E-value=0.0031  Score=64.75  Aligned_cols=31  Identities=32%  Similarity=0.956  Sum_probs=26.4

Q ss_pred             CCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805          131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (418)
Q Consensus       131 ~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~  162 (418)
                      .|......+|+||+ .|.|+|+.+|||+|...
T Consensus       134 ~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  134 TPTHESMKPCKFFL-EGRCRFGENCRFSHGLD  164 (486)
T ss_pred             cCcchhhccchHhh-ccccccCcccccccCcc
Confidence            35455678999999 69999999999999965

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.09  E-value=0.0035  Score=37.35  Aligned_cols=19  Identities=32%  Similarity=0.990  Sum_probs=16.9

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 014805           94 DCGYYLKTGTCKYGSTCKYHHP  115 (418)
Q Consensus        94 ~Ck~flktG~Ck~G~~Crf~H~  115 (418)
                      .|+||..   |+++++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4999876   999999999995

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.04  E-value=0.0073  Score=56.80  Aligned_cols=27  Identities=37%  Similarity=0.838  Sum_probs=24.5

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCC
Q 014805           93 PDCGYYLKTGTCKYGSTCKYHHPKDRN  119 (418)
Q Consensus        93 ~~Ck~flktG~Ck~G~~Crf~H~~~~~  119 (418)
                      .+|+.|..||.|-||+.|+|+|.++..
T Consensus       142 dVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         142 DVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             ccccchhhcccccCCchhhhhhhhhhh
Confidence            379999999999999999999998743

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.60  E-value=0.012  Score=55.46  Aligned_cols=30  Identities=27%  Similarity=0.777  Sum_probs=25.9

Q ss_pred             CCCccccccccccccCCCCCCCCCCCCCCC
Q 014805          296 RPGQAICSNYSMYGICKFGPTCRFDHPYAG  325 (418)
Q Consensus       296 r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~  325 (418)
                      .+.-.+|+.|..+|+|-||+.|+|.|...-
T Consensus       138 D~qpdVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         138 DTQPDVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             ecCcccccchhhcccccCCchhhhhhhhhh
Confidence            334569999999999999999999999763

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.96  E-value=0.067  Score=53.22  Aligned_cols=26  Identities=38%  Similarity=0.889  Sum_probs=24.1

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCC
Q 014805           94 DCGYYLKTGTCKYGSTCKYHHPKDRN  119 (418)
Q Consensus        94 ~Ck~flktG~Ck~G~~Crf~H~~~~~  119 (418)
                      +|+.|-.||.|-||+.|+|+|++...
T Consensus       188 icKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  188 ICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             hhhhhHhhCcccccchhhhhhhhhhc
Confidence            79999999999999999999998754

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.68  E-value=0.09  Score=53.84  Aligned_cols=24  Identities=42%  Similarity=1.030  Sum_probs=22.8

Q ss_pred             cccccccccccCCCCCCCCCCCCCC
Q 014805           93 PDCGYYLKTGTCKYGSTCKYHHPKD  117 (418)
Q Consensus        93 ~~Ck~flktG~Ck~G~~Crf~H~~~  117 (418)
                      .+|+||++ |.|+||+.|||.|...
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCc
Confidence            58999999 9999999999999987

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.48  E-value=0.1  Score=51.93  Aligned_cols=27  Identities=33%  Similarity=0.875  Sum_probs=24.6

Q ss_pred             CccccccccccccCCCCCCCCCCCCCC
Q 014805          298 GQAICSNYSMYGICKFGPTCRFDHPYA  324 (418)
Q Consensus       298 ~~~~C~~y~~~G~C~~G~~C~f~Hp~~  324 (418)
                      ..-+|+.|..||+|-||..|+|.|...
T Consensus       185 qpDicKdykeTgycg~gdSckFlh~r~  211 (313)
T KOG1813|consen  185 QPDICKDYKETGYCGYGDSCKFLHDRS  211 (313)
T ss_pred             CchhhhhhHhhCcccccchhhhhhhhh
Confidence            345999999999999999999999975

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=88.84  E-value=0.24  Score=31.06  Aligned_cols=22  Identities=36%  Similarity=0.942  Sum_probs=18.7

Q ss_pred             cccccccccccCCCCCCCCCCCC
Q 014805           93 PDCGYYLKTGTCKYGSTCKYHHP  115 (418)
Q Consensus        93 ~~Ck~flktG~Ck~G~~Crf~H~  115 (418)
                      ++|.|-++.|.|. .+.|.|.|-
T Consensus         1 ~lC~yEl~Gg~Cn-d~~C~~QHf   22 (23)
T PF10650_consen    1 PLCPYELTGGVCN-DPDCEFQHF   22 (23)
T ss_pred             CCCccccCCCeeC-CCCCCcccc
Confidence            3699999966997 789999995

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=86.17  E-value=0.26  Score=48.19  Aligned_cols=28  Identities=29%  Similarity=0.581  Sum_probs=25.6

Q ss_pred             CCCCccccccccccccCCCCCCCCCCCCC
Q 014805          295 SRPGQAICSNYSMYGICKFGPTCRFDHPY  323 (418)
Q Consensus       295 ~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~  323 (418)
                      .+++...|..|.. +.|.+|..|.|.|..
T Consensus       148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k  175 (260)
T KOG2202|consen  148 TDFREAICGQFER-TECSRGGACNFMHVK  175 (260)
T ss_pred             Cchhhhhhccccc-ccCCCCCcCcchhhh
Confidence            5677889999999 799999999999997

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.74  E-value=0.31  Score=49.95  Aligned_cols=25  Identities=44%  Similarity=1.026  Sum_probs=23.5

Q ss_pred             cccccccccccCCCCCCCCCCCCCCC
Q 014805          300 AICSNYSMYGICKFGPTCRFDHPYAG  325 (418)
Q Consensus       300 ~~C~~y~~~G~C~~G~~C~f~Hp~~~  325 (418)
                      .+|++|.+ |+|+||.+|+|.|....
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            79999999 99999999999999873

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=83.07  E-value=0.89  Score=28.51  Aligned_cols=22  Identities=36%  Similarity=0.939  Sum_probs=18.3

Q ss_pred             CCccCcCCCCCCCCCCCccCCCC
Q 014805          138 KSCPYYMRTGSCKFGVACKFHHP  160 (418)
Q Consensus       138 ~~C~~f~k~G~C~~G~~Crf~H~  160 (418)
                      ++|+|-++.|.|. -+.|.|.|.
T Consensus         1 ~lC~yEl~Gg~Cn-d~~C~~QHf   22 (23)
T PF10650_consen    1 PLCPYELTGGVCN-DPDCEFQHF   22 (23)
T ss_pred             CCCccccCCCeeC-CCCCCcccc
Confidence            3799999766997 479999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	418
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	5e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-13
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-12
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	8e-07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-06
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-05
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-04
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	3e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	4e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	7e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 66.1 bits (161), Expect = 5e-14
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C  Y ++G C+YG+ C++ H       G           +   + C  +   G C +G  
Sbjct: 15  CRTYSESGRCRYGAKCQFAH-------GLGELRQANRHPKYKTELCHKFKLQGRCPYGSR 67

Query: 155 CKFHHPQ 161
           C F H  
Sbjct: 68  CHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 65.0 bits (158), Expect = 1e-13
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
           CR Y  +G C+YGA C+F H            +       +    +C  + + G C +G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 316 TCRFDHP 322
            C F H 
Sbjct: 67  RCHFIHN 73

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  Y  +G C YG+ C+F H      G   +     +     C  +   G C YGS C +
Sbjct: 15  CRTYSESGRCRYGAKCQFAHG----LGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHF 70

Query: 113 HHPKDRN 119
            H    +
Sbjct: 71  IHNPTED 77

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 256 CRYYMNTGTCKYGADCKFHHPKE 278
           C  +   G C YG+ C F H   
Sbjct: 53  CHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 35 GGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
          G G  + +    +     C  ++  G C YGS C F H 
Sbjct: 35 GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHN 73

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 24/81 (29%)

Query: 241 SASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQA 300
           S+ S     +  +  C++Y+ TG C    +C + H                         
Sbjct: 2   SSGSSGELPKKREL-CKFYI-TGFCARAENCPYMHG----------------------DF 37

Query: 301 ICSNYSMYGICKFGPTCRFDH 321
            C  Y   G C  G  C F H
Sbjct: 38  PCKLYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 46.2 bits (109), Expect = 8e-07
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 20/78 (25%)

Query: 37  GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCG 96
           G + +S    +  E  C FY   G C    NC + H  +                   C 
Sbjct: 1   GSSGSSGELPKKREL-CKFYIT-GFCARAENCPYMHGDFP------------------CK 40

Query: 97  YYLKTGTCKYGSTCKYHH 114
            Y  TG C  G  C + H
Sbjct: 41  LYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 22/65 (33%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C +Y+ TG C     C Y H                      +  C  Y  TG+C  G  
Sbjct: 16  CKFYI-TGFCARAENCPYMH---------------------GDFPCKLYHTTGNCINGDD 53

Query: 155 CKFHH 159
           C F H
Sbjct: 54  CMFSH 58

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 15/65 (23%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  + R GLC  G  C F H               +     +C +Y K G C     C +
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHE-------------YDMTKMSECYFYSKFGECS-NKECPF 63

Query: 113 HHPKD 117
            H   
Sbjct: 64  LHIDP 68

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 18/70 (25%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C ++L+ G CK G  C++ H  D                      C +Y + G C     
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD----------------MTKMSECYFYSKFGECS-NKE 60

Query: 155 CKFHHPQPSS 164
           C F H  P S
Sbjct: 61  CPFLHIDPES 70

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 19/67 (28%)

Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
           C++++  G CK G  C+F H  +                ++   + C  YS +G C    
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD---------------MTK--MSECYFYSKFGECS-NK 59

Query: 316 TCRFDHP 322
            C F H 
Sbjct: 60  ECPFLHI 66

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 19/66 (28%)

Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
           C++++  G CK G  C+F H                          C  YS +G C    
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHE-----------------YDMTKMPECYFYSKFGEC-SNK 53

Query: 316 TCRFDH 321
            C F H
Sbjct: 54  ECPFLH 59

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 15/71 (21%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  + R GLC  G  C F H               +    P+C +Y K G C     C +
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHE-------------YDMTKMPECYFYSKFGECS-NKECPF 57

Query: 113 HHPKDRNGAGP 123
            H    +    
Sbjct: 58  LHIDPESKIKD 68

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 18/70 (25%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C ++L+ G CK G  C++ H  D                      C +Y + G C     
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHEYD----------------MTKMPECYFYSKFGEC-SNKE 54

Query: 155 CKFHHPQPSS 164
           C F H  P S
Sbjct: 55  CPFLHIDPES 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	418
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.51
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.48
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.46
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.43
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.31
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.19
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.17
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.17
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.15
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.13
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.96
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.91
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.86
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.83
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.83
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.78
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.47
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.16
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	97.38
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.76
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	96.63
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.25
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.85
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.87
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.75
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.93

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=115.70  Aligned_cols=68  Identities=29%  Similarity=0.656  Sum_probs=58.0

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCcee
Q 014805           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF  126 (418)
Q Consensus        47 Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~  126 (418)
                      ..++++|+||++ |.|++|++|+|+|+....             ++++|+||+++|.|. |++|+|+|....        
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~--------   63 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMPECYFYSKFGECS-NKECPFLHIDPE--------   63 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT--------
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCccccccC-------------cCCCCcccCCCCccC-CCCeeccCCCcc--------
Confidence            456889999997 999999999999997743             356899999889999 999999999753        


Q ss_pred             cccCCCCccCCCCccCcCC
Q 014805          127 NILGLPMRQDEKSCPYYMR  145 (418)
Q Consensus       127 ~~~g~P~r~~~~~C~~f~k  145 (418)
                              .+..+|.+|++
T Consensus        64 --------~~~~~C~~f~~   74 (77)
T 2d9n_A           64 --------SKIKDCPWSGP   74 (77)
T ss_dssp             --------SSCSSSSCCTT
T ss_pred             --------ccCCCCccccc
Confidence                    24679999995

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.48  E-value=1.1e-14  Score=115.50  Aligned_cols=69  Identities=29%  Similarity=0.708  Sum_probs=31.2

Q ss_pred             CCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014805          249 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  325 (418)
Q Consensus       249 er~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~  325 (418)
                      .++++.+|++|+++|.|++|++|+|+|+.++++...        ...++++.+|.+|..+|.|++|.+|+|.|+..+
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            357899999999889999999999999998887532        112567889999998899999999999998653

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.46  E-value=2.7e-14  Score=113.11  Aligned_cols=69  Identities=28%  Similarity=0.583  Sum_probs=30.0

Q ss_pred             CCCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805           45 PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (418)
Q Consensus        45 p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~  117 (418)
                      ..++++.+|++|+++|.|++|++|+|+|+..+.....    ...+.++.+|++|..+|.|++|++|+|+|...
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            4578999999998789999999999999987542211    11234678999888779999999999999865

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.43  E-value=2.8e-14  Score=118.85  Aligned_cols=88  Identities=25%  Similarity=0.423  Sum_probs=68.5

Q ss_pred             CCCCCCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCC
Q 014805           42 SPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA  121 (418)
Q Consensus        42 ~~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~  121 (418)
                      ..+..++++.+|+||+ +|.|++|++|+|+|+.                  .+|++|+.+|.|++|++|+|+|.......
T Consensus         5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~~------------------~~C~~f~~~G~C~~G~~C~f~H~~~~~~~   65 (98)
T 2cqe_A            5 SSGELPKKRELCKFYI-TGFCARAENCPYMHGD------------------FPCKLYHTTGNCINGDDCMFSHDPLTEET   65 (98)
T ss_dssp             CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSSS------------------SBCSHHHHTSCCSSCTTCSSBCCCCCHHH
T ss_pred             ccCCCCCCCccCcccc-cCcCCCCCCCCCCCCC------------------CcCcCcccCCcCCCCCCCcccCCCCcccc
Confidence            4456678899999998 5999999999999991                  26999976699999999999999653211


Q ss_pred             CC---ceecccCCCCccCCCCccCcCCCCC
Q 014805          122 GP---VSFNILGLPMRQDEKSCPYYMRTGS  148 (418)
Q Consensus       122 ~~---v~~~~~g~P~r~~~~~C~~f~k~G~  148 (418)
                      ..   ..++..+.+.+..++.|..+.|+|.
T Consensus        66 ~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~   95 (98)
T 2cqe_A           66 RELLDKMLADDAEAGAEDEKEVEELKKSGP   95 (98)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred             hhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence            00   1234456677888999999999875

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.31  E-value=5e-13  Score=105.26  Aligned_cols=58  Identities=28%  Similarity=0.617  Sum_probs=50.1

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCC
Q 014805           46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (418)
Q Consensus        46 ~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~  118 (418)
                      ...++++|+||++ |.|.+|++|+|+|+.+..             ++++|+||++.|.|.+ ++|+|.|....
T Consensus        12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CCCcCeeCHHHhc-CCCCCCCCCCCccccccc-------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            3567889999997 999999999999997642             4568999998899998 99999998753

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=4e-12  Score=101.21  Aligned_cols=55  Identities=31%  Similarity=0.753  Sum_probs=47.8

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCC
Q 014805           91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (418)
Q Consensus        91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~  163 (418)
                      ++.+|+||++ |.|++|++|+|+|+...                .+.++|+||++.|.|. |++|+|.|..+.
T Consensus         9 k~~~C~~fl~-G~C~~G~~C~fsH~~~~----------------~~~~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A            9 KTVVCKHWLR-GLCKKGDQCEFLHEYDM----------------TKMPECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             TTSBCHHHHT-TCCSCTTSSSSBCSCCT----------------TTSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             cceeCHhHcc-CcCCCCCCCCCcccccc----------------CcCCCCcccCCCCccC-CCCeeccCCCcc
Confidence            5679999999 99999999999999763                1356899999769999 899999999764

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.17  E-value=3.5e-12  Score=100.40  Aligned_cols=55  Identities=31%  Similarity=0.736  Sum_probs=47.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCC
Q 014805           91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (418)
Q Consensus        91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~  163 (418)
                      ++.+|+||++ |.|++|++|+|+|+...                ...++|+||++.|.|.+ ++|+|.|..+.
T Consensus        15 k~~vCk~fl~-G~C~~G~~C~fsH~~~~----------------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           15 KTVVCKHWLR-GLCKKGDQCEFLHEYDM----------------TKMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             CCSBCHHHHT-TCCCCGGGSSSBCSCCT----------------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             cCeeCHHHhc-CCCCCCCCCCCcccccc----------------ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            5678999999 99999999999999652                13569999996699999 99999999764

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.17  E-value=1.6e-11  Score=102.16  Aligned_cols=55  Identities=25%  Similarity=0.594  Sum_probs=47.9

Q ss_pred             CCCCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014805          247 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  324 (418)
Q Consensus       247 ~Per~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~  324 (418)
                      +..+.++.+|+||++ |.|.+|+.|+|+|+                      +.+|++|.++|.|++|.+|+|.|+..
T Consensus         7 ~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A            7 GELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCCSCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCCCCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            344568999999975 99999999999995                      34899998679999999999999954

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.15  E-value=1.3e-11  Score=96.49  Aligned_cols=59  Identities=39%  Similarity=0.751  Sum_probs=47.1

Q ss_pred             CCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805           50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (418)
Q Consensus        50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~  117 (418)
                      .++|++|++ |.|.+|+ .|+|+|+.+....      -+...++++|++|++ |.|.+| +|+|+|...
T Consensus         6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             chhCHHHhc-CCCCCCCCCCCCccCcccccc------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            468999996 9999999 5999999764211      012336789999999 999988 999999864

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-11  Score=103.23  Aligned_cols=66  Identities=33%  Similarity=0.620  Sum_probs=51.2

Q ss_pred             CCCCCCCCCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805           43 PYPARPGEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (418)
Q Consensus        43 ~~p~Rp~~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~  117 (418)
                      ....-.+.++|++|++ |.|.+|+ .|+|+|+.+....      .+...++++|++|++ |.|.++ +|+|.|...
T Consensus        13 K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           13 KLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMI------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             CCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             cccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence            3333445689999998 9999999 8999999864311      112336789999999 999988 999999875

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.96  E-value=2.4e-10  Score=92.27  Aligned_cols=57  Identities=35%  Similarity=0.683  Sum_probs=46.4

Q ss_pred             CCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805           50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (418)
Q Consensus        50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~  117 (418)
                      .++|++|++ |.|.+|+ .|+|+|+......        +..+.++|.+|++ |.|.++ +|+|.|...
T Consensus         9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~--------~~~~~~vC~dflk-G~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A            9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE--------ETTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred             chhcHHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeehhHhhh-ccccCC-CcceeCChH
Confidence            468999998 9999997 9999999764210        1224678999999 999977 999999865

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.91  E-value=1.9e-10  Score=89.89  Aligned_cols=62  Identities=31%  Similarity=0.718  Sum_probs=49.7

Q ss_pred             CCccchhhHhcCcCCCCC-CcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 014805          252 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  326 (418)
Q Consensus       252 k~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~  326 (418)
                      +..+|++|++ |.|..|+ .|+|+|+.+++...          +...++.+|.+|.+ |.|..| .|+|.|+...|
T Consensus         5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A            5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred             cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence            4578999988 9999999 59999987654321          12335789999999 999999 99999997644

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.86  E-value=7.6e-10  Score=90.45  Aligned_cols=57  Identities=35%  Similarity=0.701  Sum_probs=46.8

Q ss_pred             CCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805           50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (418)
Q Consensus        50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~  117 (418)
                      .++|++|+| |.|.+|+ .|+|+|+......        +..++++|.+|++ |.|.++ +|+|.|...
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v--------~~~~~~vC~dflk-G~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC--------BTTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeeehhhhh-CcCCCC-CcceecCHH
Confidence            578999998 9999998 9999999764211        1225789999999 999965 999999865

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.83  E-value=8.1e-10  Score=89.20  Aligned_cols=59  Identities=27%  Similarity=0.634  Sum_probs=46.9

Q ss_pred             cccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCC
Q 014805           91 GQPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (418)
Q Consensus        91 ~~~~Ck~flktG~Ck~G~-~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~  163 (418)
                      +..+|++|++ |.|++|+ .|+|+|+.......           .....+|.+|++ |.|.++ .|+|.|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~-----------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE-----------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence            4578999999 9999997 99999997632110           123569999996 999998 9999999653

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=7e-10  Score=92.26  Aligned_cols=63  Identities=30%  Similarity=0.662  Sum_probs=51.1

Q ss_pred             CCCccchhhHhcCcCCCCC-CcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 014805          251 PDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  326 (418)
Q Consensus       251 ~k~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~  326 (418)
                      .+..+|++|++ |.|..|+ .|+|+|+.+.+..          .+...+..+|.+|.+ |.|..| .|+|.|+...+
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI----------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC----------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc----------cccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence            35679999999 9999999 7999998765431          112345789999999 999999 99999998643

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.78  E-value=1.7e-09  Score=88.44  Aligned_cols=57  Identities=26%  Similarity=0.633  Sum_probs=46.1

Q ss_pred             ccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805           92 QPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (418)
Q Consensus        92 ~~~Ck~flktG~Ck~G~-~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~  162 (418)
                      ..+|++|++ |.|++|+ .|+|+|+.......           .....+|.+|++ |.|.++ .|+|.|+..
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-----------~~~~~vC~dflk-G~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-----------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence            568999999 9999998 99999997642211           113569999995 999987 999999965

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.47  E-value=6.8e-08  Score=90.74  Aligned_cols=78  Identities=27%  Similarity=0.533  Sum_probs=59.8

Q ss_pred             CCccccccCCCC----CCCCCCCCCccccccccc----------------------ccccCCCCcccccccccccc----
Q 014805           52 DCLFYRRTGLCG----YGSNCRFNHPAYAAQGAQ----------------------YREELPERNGQPDCGYYLKT----  101 (418)
Q Consensus        52 ~C~~f~rtG~C~----~G~~C~F~H~~~~~~~~~----------------------~~~~~per~~~~~Ck~flkt----  101 (418)
                      +|++|+ .|.|+    .+..|+|+|+.....+..                      ...-+|     .+|.+| +.    
T Consensus        91 LCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~~  163 (229)
T 3u9g_A           91 LCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGRK  163 (229)
T ss_dssp             CCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSSC
T ss_pred             echhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCCC
Confidence            699999 49993    457899999986432110                      011133     379999 72    


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805          102 GTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (418)
Q Consensus       102 G~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~  162 (418)
                      |.|+++++|..+|                        +|.+|+ .|.|+| .+|+-.|...
T Consensus       164 g~C~~~~~C~kLH------------------------IC~~Fl-~G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          164 QTCGQPQPCERLH------------------------ICEHFT-RGNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             CSCSSSSCCCSBC------------------------SCHHHH-TTCCCC-SSCSSCCCTT
T ss_pred             CcCCCCCCCccee------------------------ccchhh-cCCcCC-CCccCccCcc
Confidence            5899999999999                        799999 599999 7999999964

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.16  E-value=1.8e-06  Score=81.13  Aligned_cols=65  Identities=23%  Similarity=0.357  Sum_probs=42.7

Q ss_pred             ccccccccccCC----CCCCCCCCCCCCCCCCCCc-------eecc-----cCCCC--ccCCCCccCcCCC----CCCCC
Q 014805           94 DCGYYLKTGTCK----YGSTCKYHHPKDRNGAGPV-------SFNI-----LGLPM--RQDEKSCPYYMRT----GSCKF  151 (418)
Q Consensus        94 ~Ck~flktG~Ck----~G~~Crf~H~~~~~~~~~v-------~~~~-----~g~P~--r~~~~~C~~f~k~----G~C~~  151 (418)
                      +||+|+. |.|.    .+..|+|+|+.....+..+       .++.     +-+..  ..-..+|.+| +.    |.|.+
T Consensus        91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~  168 (229)
T 3u9g_A           91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ  168 (229)
T ss_dssp             CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred             echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence            5999998 9993    3577999999864321111       0110     00011  1234799999 63    69999


Q ss_pred             CCCccCCCC
Q 014805          152 GVACKFHHP  160 (418)
Q Consensus       152 G~~Crf~H~  160 (418)
                      +++|...|+
T Consensus       169 ~~~C~kLHI  177 (229)
T 3u9g_A          169 PQPCERLHI  177 (229)
T ss_dssp             SSCCCSBCS
T ss_pred             CCCCcceec
Confidence            999999998

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=97.38  E-value=3.8e-07  Score=72.88  Aligned_cols=65  Identities=26%  Similarity=0.678  Sum_probs=52.8

Q ss_pred             CCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceeccc
Q 014805           50 EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNIL  129 (418)
Q Consensus        50 ~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~  129 (418)
                      .+.|+||..   |.+ ..|.|.|+...                +.|+|+..   |+. .+|.|.|+..            
T Consensus         9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~----------------~~Cr~g~~---C~~-~~C~f~HP~~------------   52 (80)
T 2lhn_A            9 LEQCKFGTH---CTN-KRCKYRHARSH----------------IMCREGAN---CTR-IDCLFGHPIN------------   52 (80)
Confidence            457999997   999 89999998652                25999977   995 8899999732            


Q ss_pred             CCCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805          130 GLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (418)
Q Consensus       130 g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~  162 (418)
                              ..|+|+.   .|.+ ..|.|.|+..
T Consensus        53 --------~~Crf~~---~C~n-~~C~F~Hp~g   73 (80)
T 2lhn_A           53 --------EDCRFGV---NCKN-IYCLFRHPPG   73 (80)
Confidence                    3798876   4997 7999999854

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=1.1e-05  Score=62.53  Aligned_cols=31  Identities=39%  Similarity=0.726  Sum_probs=27.6

Q ss_pred             CCccchhhHhcCcCCCCCCcccCCCchhhhhc
Q 014805          252 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQS  283 (418)
Q Consensus       252 k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~  283 (418)
                      +..+|+.|++ |.|+||+.|.|+|+.+||+..
T Consensus        19 k~~LC~~~~~-G~C~~G~~C~FAHG~~ELr~~   49 (69)
T 2d9m_A           19 YFSICDRYMN-GTCPEGNSCKFAHGNAELHEW   49 (69)
T ss_dssp             CCSBCHHHHH-SCCSSCSSCSSBSSHHHHHHH
T ss_pred             CcccCcccCc-CCCCCCCccCCcCCHHHHhhH
Confidence            5589999965 999999999999999999863

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=96.63  E-value=1.5e-05  Score=63.67  Aligned_cols=41  Identities=29%  Similarity=0.770  Sum_probs=34.0

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCC
Q 014805           93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP  160 (418)
Q Consensus        93 ~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~  160 (418)
                      ..|+||..   |+. +.|.|.|...                   ...|+++.   .|.+ .+|.|.|+
T Consensus        10 e~CKf~~~---Ctn-~~C~f~Hp~~-------------------~~~Cr~g~---~C~~-~~C~f~HP   50 (80)
T 2lhn_A           10 EQCKFGTH---CTN-KRCKYRHARS-------------------HIMCREGA---NCTR-IDCLFGHP   50 (80)
Confidence            47999998   996 9999999753                   23799876   4997 78999998

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.25  E-value=0.00014  Score=56.31  Aligned_cols=33  Identities=27%  Similarity=0.541  Sum_probs=26.7

Q ss_pred             CCCCCCCCCCCccccccCCCCCCCCCCCCCccccc
Q 014805           43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA   77 (418)
Q Consensus        43 ~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~   77 (418)
                      .+|.. +..+|+.|. +|.|.+|++|.|+|...+.
T Consensus        14 R~P~~-k~~LC~~~~-~G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           14 RFPTG-YFSICDRYM-NGTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCCCS-CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred             cCCCC-CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence            33433 459999996 6999999999999998764

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.85  E-value=0.00023  Score=51.33  Aligned_cols=28  Identities=43%  Similarity=1.028  Sum_probs=25.9

Q ss_pred             CccccccccccccCCCCCCCCCCCCCCC
Q 014805          298 GQAICSNYSMYGICKFGPTCRFDHPYAG  325 (418)
Q Consensus       298 ~~~~C~~y~~~G~C~~G~~C~f~Hp~~~  325 (418)
                      ++.+|..|..+|+|++|.+|.|.|.++-
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCCC
Confidence            5789999999999999999999999863

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.87  E-value=0.0025  Score=45.96  Aligned_cols=29  Identities=21%  Similarity=0.416  Sum_probs=26.9

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCcccc
Q 014805           48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYA   76 (418)
Q Consensus        48 p~~~~C~~f~rtG~C~~G~~C~F~H~~~~   76 (418)
                      .++.+|..|...|.|++|.+|.+.|+.+.
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCC
Confidence            57899999999999999999999999875

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.75  E-value=0.045  Score=51.93  Aligned_cols=25  Identities=32%  Similarity=0.804  Sum_probs=22.4

Q ss_pred             CCCCccccccCCCCCCCCCCCCCccc
Q 014805           50 EPDCLFYRRTGLCGYGSNCRFNHPAY   75 (418)
Q Consensus        50 ~~~C~~f~rtG~C~~G~~C~F~H~~~   75 (418)
                      .-+|.||.| |.|.+|++|.|.|...
T Consensus        70 ~~~C~ffak-G~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           70 LFFCLFFAK-GMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             CSBCHHHHT-TCCSCGGGCSSBBSCC
T ss_pred             CeEcCcccc-CCCCCCCCCCccCCCC
Confidence            458999998 9999999999999854

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.93  E-value=0.053  Score=51.46  Aligned_cols=26  Identities=27%  Similarity=0.768  Sum_probs=23.6

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCC
Q 014805          299 QAICSNYSMYGICKFGPTCRFDHPYAG  325 (418)
Q Consensus       299 ~~~C~~y~~~G~C~~G~~C~f~Hp~~~  325 (418)
                      ..+|.||.+ |.|+.|..|.|.|-++.
T Consensus        70 ~~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           70 LFFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence            459999999 99999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	418
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-04
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	3e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	3e-04

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 256 CRYYMNTGTCKYGADCKFHHPKE 278
           CR +  +GTCKYG  C+F H   
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 256 CRYYMNTGTCKYGADCKFHHPKE 278
           CR +   G C YG  C F H  +
Sbjct: 11  CRTFHTIGFCPYGPRCHFIHNAD 33

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 256 CRYYMNTGTCKYGADCKFHHPKE 278
           CR Y  +G C+YGA C+F H   
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	418
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.67
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.64
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.48
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.42
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.35
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.34
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.74
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.6
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.92
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.45
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	94.46
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	90.06

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.8e-09  Score=71.12  Aligned_cols=33  Identities=36%  Similarity=0.792  Sum_probs=30.9

Q ss_pred             CCCCccchhhHhcCcCCCCCCcccCCCchhhhh
Q 014805          250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  282 (418)
Q Consensus       250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~  282 (418)
                      ++|+.+|++|...|.|++|+.|+|+|+.+||+.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            689999999998899999999999999999874

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=6.9e-09  Score=70.76  Aligned_cols=35  Identities=37%  Similarity=0.811  Sum_probs=32.3

Q ss_pred             CCCCCCccchhhHhcCcCCCCCCcccCCCchhhhh
Q 014805          248 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  282 (418)
Q Consensus       248 Per~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~  282 (418)
                      +.++|+.+|++|.+.|.|++|+.|.|+|+.+||+.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            35789999999999999999999999999999985

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.7e-08  Score=66.36  Aligned_cols=30  Identities=30%  Similarity=0.755  Sum_probs=27.8

Q ss_pred             CCCCccchhhHhcCcCCCCCCcccCCCchh
Q 014805          250 RPDQPDCRYYMNTGTCKYGADCKFHHPKER  279 (418)
Q Consensus       250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~  279 (418)
                      ++|+.+|++|..+|.|+||+.|.|+|+.+|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            589999999999999999999999998754

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=5.9e-08  Score=66.01  Aligned_cols=34  Identities=32%  Similarity=0.757  Sum_probs=31.3

Q ss_pred             CCCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 014805          294 PSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  327 (418)
Q Consensus       294 p~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~~  327 (418)
                      ..++++++|++|.+.|.|+||++|.|+|...+|+
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            4589999999999999999999999999998875

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-08  Score=66.66  Aligned_cols=33  Identities=27%  Similarity=0.760  Sum_probs=30.4

Q ss_pred             CCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 014805          295 SRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  327 (418)
Q Consensus       295 ~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~~  327 (418)
                      .++|+++|++|..+|.|+||++|.|+|...+|+
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            378999999999989999999999999998875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.7e-08  Score=64.68  Aligned_cols=29  Identities=31%  Similarity=0.695  Sum_probs=27.3

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCccc
Q 014805           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAY   75 (418)
Q Consensus        47 Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~   75 (418)
                      |++|.+|+.|.++|.|.+|++|.|+|..+
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            79999999999899999999999999865

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5.4e-06  Score=50.98  Aligned_cols=24  Identities=29%  Similarity=0.816  Sum_probs=21.7

Q ss_pred             cccccccccccccCCCCCCCCCCCC
Q 014805           91 GQPDCGYYLKTGTCKYGSTCKYHHP  115 (418)
Q Consensus        91 ~~~~Ck~flktG~Ck~G~~Crf~H~  115 (418)
                      +..+|+||++ |.|.+|++|.|.|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            4568999998 99999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.5e-05  Score=48.96  Aligned_cols=24  Identities=38%  Similarity=0.837  Sum_probs=21.9

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCc
Q 014805           49 GEPDCLFYRRTGLCGYGSNCRFNHP   73 (418)
Q Consensus        49 ~~~~C~~f~rtG~C~~G~~C~F~H~   73 (418)
                      +.++|+||+ +|.|.+|++|.|.|.
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccC
Confidence            468999999 599999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0011  Score=47.09  Aligned_cols=23  Identities=35%  Similarity=0.870  Sum_probs=20.5

Q ss_pred             ccccccccccCCCCCCCCCCCCC
Q 014805           94 DCGYYLKTGTCKYGSTCKYHHPK  116 (418)
Q Consensus        94 ~Ck~flktG~Ck~G~~Crf~H~~  116 (418)
                      .|+||..++.|..|++|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            49999987799999999999964

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0012  Score=46.90  Aligned_cols=22  Identities=41%  Similarity=0.901  Sum_probs=20.1

Q ss_pred             CccCcCCCCCCCCCCCccCCCC
Q 014805          139 SCPYYMRTGSCKFGVACKFHHP  160 (418)
Q Consensus       139 ~C~~f~k~G~C~~G~~Crf~H~  160 (418)
                      +|+||..++.|..|++|+|+|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            6999997779999999999995

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0041  Score=40.03  Aligned_cols=26  Identities=42%  Similarity=1.008  Sum_probs=23.6

Q ss_pred             CccccccccccccCCCCCCCCCCCCC
Q 014805          298 GQAICSNYSMYGICKFGPTCRFDHPY  323 (418)
Q Consensus       298 ~~~~C~~y~~~G~C~~G~~C~f~Hp~  323 (418)
                      .+.+|..|..+|+|+.|.+|...|.+
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCcC
Confidence            36799999999999999999999974

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.042  Score=35.16  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=23.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCC
Q 014805           91 GQPDCGYYLKTGTCKYGSTCKYHHPK  116 (418)
Q Consensus        91 ~~~~Ck~flktG~Ck~G~~Crf~H~~  116 (418)
                      .+.+|..|...|+|..|.+|.-+|+.
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCcC
Confidence            46689999999999999999999973