Citrus Sinensis ID: 014809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEERIQAGTSQA
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHccccccEEEEcccccccccEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccEEEEEEccccccccEEEEEEEccEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccccccccccHHHEccccccccccHHccccccHHHcccccccccccccccccccccccEEEEEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEcccccccccHEEcccccc
Coil and Loop (DISEMBL)
mptnegfsgvsncYVFKSRLQEYAqkagiptpvyetikegpshepwfrstvivddvrydslpgffnrKAAEQSAAEVALVELAKLgkvnecisqpihetGLCKNLLQEYAQKMNYaiplyqcrkdeasgkvqfSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSaselsgnsagntqltvlpsrkrgpevannpeetvnvpkakkgrfKKKILKmkrpggrmdrtqlqntgnmeninasqegskvsqantsgiqgvSTEVLAVEgtmdcqegrseiepierempavndalphhiggdsetihsaathcsdrssneasemGTSSLAKEvnevtpgvgtssvsCHTTALAKEvnegtpnegtstalteevnepsgimeaasmtnnstlgqiesscvipginqpeeriqagtsqa
Flexible Loop (DISEMBL)
mptnegfsgvsNCYVFKSRLQEYAQKAGIPTPVYetikegpshepwFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSsaselsgnsagntqltvlpsrkrgpevannpeetvnvpkakkgrfkkkilkmkrpggrmdrtqlqntgNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAkevnegtpnegtstalteevnEPSGIMEAASMTNNSTLGQIESSCVIPGINqpeeriqagtsqa
Low Complexity Region (SEG)
MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRkaaeqsaaevalvelaklGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYiggaaktkkeaeikaartaLLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEERIQAGTSQA
Disordered region (IsUnstruct)
********GVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTK****IKAARTALL*************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*******SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDD*******************AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY**********AEIKAARTALLA************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
********GVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINAS************GIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSA******************SLAKEVNEV**********CHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEER********
Disordered Region (DISPRO)
*********VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK*************ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS*********************************************K*************************I******************GVSTEVLAVEGTMDCQEGRSEIEPIEREMPAV*******************************************************CHTTALAKEVN*******TS******VNEPSGIMEAASMTNNSTLGQIESSCVIPGINQP***IQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESSCVIPGINQPEERIQAGTSQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	418	2.2.26 [Sep-21-2011]
O04492	419	Double-stranded RNA-bindi	yes	no	0.497	0.496	0.677	2e-76
Q0IV63	473	Double-stranded RNA-bindi	yes	no	0.452	0.399	0.659	2e-65
Q0IQN6	424	Double-stranded RNA-bindi	no	no	0.452	0.445	0.654	1e-64
Q0DJA3	437	Double-stranded RNA-bindi	no	no	0.452	0.432	0.649	7e-62
Q0DKP4	593	Double-stranded RNA-bindi	no	no	0.356	0.251	0.384	3e-21
Q5N8Z0	441	Double-stranded RNA-bindi	no	no	0.346	0.328	0.413	1e-20
Q9SKN2	434	Double-stranded RNA-bindi	no	no	0.389	0.375	0.368	6e-20
B7E321	404	Double-stranded RNA-bindi	no	no	0.373	0.386	0.358	9e-20
Q9LJF5	359	Double-stranded RNA-bindi	no	no	0.368	0.428	0.363	2e-19
Q8GY79	393	Double-stranded RNA-bindi	no	no	0.377	0.402	0.348	1e-18

>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1

 Score =  286 bits (733), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/211 (67%), Positives = 167/211 (79%), Gaps = 3/211 (1%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           M + +  SGVSNCYVFKSRLQEYAQK  +PTPVYE +KEGPSH+  F+STVI+D VRY+S
Sbjct: 1   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGFFNRKAAEQSAAEVAL ELAK  ++++C+SQP+HETGLCKNLLQEYAQKMNYAIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
           QC+K E  G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS       N  
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANY- 179

Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAK 210
            NTQLTVLP  K+  + A   +ETV   KA+
Sbjct: 180 -NTQLTVLPCEKKTIQAAIPLKETVKTLKAR 209

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis by assisting DICER-LIKE 1 (DCL1) in the accurate processing from primary miRNAs (pri-miRNAs) to miRNAs in the nucleus. Forms a complex with SERRATE (SE) and DCL1 to promote accurate processing of pri-miRNAs by DCL1. Binds and assist DCL1 for accurate processing of precursor miRNAs (pre-miRNA). Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved with argonaute 1 (AGO1) in the guide strand selection from miRNA duplexes, presumably by directional loading of the miRNA duplex (guide stand and passenger strand) onto the RNA-induced silencing complex (RISC) for passenger strand degradation. Does not participate in sense transgene-induced post-transcriptional gene silencing (S-PTGS). Involved in several plant development aspects and response to hormones through its role in miRNAs processing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/194 (65%), Positives = 147/194 (75%), Gaps = 5/194 (2%)

Query: 10  VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
           V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++  YDSLPGFFNRKA
Sbjct: 28  VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
           AEQSAAEVAL+E+ K    N  I   + ETGLCKNLLQEYAQKMNYAIP Y C K  ASG
Sbjct: 88  AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145

Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
              F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ  +    G++ G T+  V+P 
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 202

Query: 190 RKRGPEVANNPEET 203
           ++ G EV   P ET
Sbjct: 203 KRVGKEVEKMPIET 216

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1

 Score =  247 bits (631), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 146/194 (75%), Gaps = 5/194 (2%)

Query: 10  VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
           V NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++  YDSLPGFFNRKA
Sbjct: 28  VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
           AEQSAAEVAL+E+ K    N  I   + ETGLCKNLLQEYAQKMNYAIP Y C K  ASG
Sbjct: 88  AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145

Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
              F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ  +    G++ G T+  V+P 
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 202

Query: 190 RKRGPEVANNPEET 203
           ++ G EV   P ET
Sbjct: 203 KRVGKEVEKRPIET 216

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1

 Score =  238 bits (607), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 145/194 (74%), Gaps = 5/194 (2%)

Query: 10  VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
           V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++  Y SLPGF NRKA
Sbjct: 30  VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89

Query: 70  AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
           AEQSAAEVAL+E+ K    N  I   + ETGLCKNLLQEYAQKMNYAIP Y C K  ASG
Sbjct: 90  AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKP-ASG 147

Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
              F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ  +    G++ G T+  V+P 
Sbjct: 148 LAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 204

Query: 190 RKRGPEVANNPEET 203
           ++ G EV   P ET
Sbjct: 205 KRVGKEVEKRPIET 218

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 15  VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
           ++K++LQE AQ++    P Y  I+EGP H P F++TV  +   ++S P F +  + AE +
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEHA 59

Query: 74  AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
           AAEVAL EL+K G  +   ++ + ETG+ KNLLQE A +    +P+Y   +        F
Sbjct: 60  AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVF 119

Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
           +CTVE+  + + G   KTKK+A+  AA  A 
Sbjct: 120 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAW 150

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica GN=DRB1 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 5/150 (3%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           +KS+LQ YAQK G   P Y+TI+EGP H   F+S V VD   ++S   F   K AE +AA
Sbjct: 87  YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146

Query: 76  EVALVELAKLGKVNECIS-QPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
           ++AL+ L +    +E +  QP+      KNLLQE AQK  +++P+Y    D +     F 
Sbjct: 147 KLALMSLPQEASSSEQVPVQPLSY----KNLLQELAQKHGFSLPVYSTTSDGSVQVPMFK 202

Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
            TV   D  + G  A TKK+AE+ AAR A 
Sbjct: 203 STVVFQDGSFQGEPANTKKQAEMNAARVAF 232

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 92/163 (56%)

Query: 15  VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           ++K++LQE AQ++    P Y  I+EGP H P F++TV  +   ++S       + AE SA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 75  AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
           AEVAL  L+  G  +   ++ + ETG+ KNLLQE AQ++   +P Y   +     +  F+
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
            TVE+  I + G  AK KK+AE  AA  A  +++  A E S +
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSS 163

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica GN=DRB5 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 85/156 (54%)

Query: 15  VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           ++K++LQE AQ++    P Y   +EGP H P F++TV  +   +D        + AE +A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60

Query: 75  AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
           AEVAL  L+  G  +   ++ + ETG+ KNLLQE A +    +P+Y   +        FS
Sbjct: 61  AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120

Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170
            TVE+  + + G  AKTKK AE  AA  A  +++ S
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQS 156

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 87/154 (56%)

Query: 15  VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           ++K++LQE AQ++    P Y   +EGP H P F+++V  +   ++S       + AE SA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 75  AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
           AEVAL  L+  G      ++ + ETG+ KNLLQE A +    +P+Y   +        FS
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
           CTVE+  + + G +AKTKK+AE  AA  A  +++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR 154

Binds double-stranded RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 90/158 (56%)

Query: 15  VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           ++K++LQE AQ++    P Y  I+EGP H P F+++V  +   ++S       + AE +A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 75  AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
           AEV+L  L+         ++ + ETG+ KNLLQE A +    +P+Y   +  +     FS
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
           CTVE+  + + G +AKTKK+AE  AA  A  +++  +S
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSS 158

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
255545990	361	conserved hypothetical protein [Ricinus	0.700	0.811	0.663	7e-98
225459069	400	PREDICTED: double-stranded RNA-binding p	0.803	0.84	0.553	2e-97
302142076	415	unnamed protein product [Vitis vinifera]	0.803	0.809	0.553	2e-97
356510122	359	PREDICTED: double-stranded RNA-binding p	0.667	0.777	0.665	2e-96
224067130	355	predicted protein [Populus trichocarpa]	0.842	0.991	0.543	2e-96
356515734	359	PREDICTED: double-stranded RNA-binding p	0.667	0.777	0.658	3e-96
255637537	359	unknown [Glycine max]	0.667	0.777	0.658	5e-96
357465225	780	DsRNA-binding protein [Medicago truncatu	0.617	0.330	0.637	6e-86
449511425	351	PREDICTED: double-stranded RNA-binding p	0.514	0.612	0.721	7e-85
224084552	213	predicted protein [Populus trichocarpa]	0.466	0.915	0.79	1e-84

>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis] gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]

 Score =  363 bits (933), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 197/297 (66%), Positives = 227/297 (76%), Gaps = 4/297 (1%)

Query: 8   SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
           S VSNCYVFKSRLQEYAQK G+PTPVYETIKEGPSHEP FRSTVIV+D+RYDSLPGFFNR
Sbjct: 9   SSVSNCYVFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNR 68

Query: 68  KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEA 127
           KAAEQSAAEVAL+ELAK  +VN+ ISQP+HETGLCKNLLQEYAQKMNYAIPLY C+K+E+
Sbjct: 69  KAAEQSAAEVALMELAKCDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNES 128

Query: 128 SGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTV 186
            G+   F CTVEIG I YIG +AKTKKEAEIKAARTALLAIQ SASE S NS GN QLTV
Sbjct: 129 PGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQLSASESSHNSIGNCQLTV 188

Query: 187 LPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQ 246
           +P RKRG E A   EE +NVPKAKK RF+KK LK K  G ++D  Q +  GN ++    Q
Sbjct: 189 IPFRKRGAETAAVLEEAMNVPKAKKARFRKKTLKKKHSGNKVDHNQGETIGNKKD---GQ 245

Query: 247 EGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGD 303
            GS+  + + S +QG   ++L +  T + ++GR   E  ERE   V  AL  HI GD
Sbjct: 246 AGSESDKNDASVVQGTGHQLLPMLSTSNSEDGRLVPESSERETTDVTGALVCHISGD 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera] gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/349 (55%), Positives = 246/349 (70%), Gaps = 13/349 (3%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           M +N+GF+GVSNCYVFKSRLQEYAQK G+PTP+Y+TIKEGP H P F+STVIV+DVRYDS
Sbjct: 1   MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGF NRKAAEQSAAEVALVELAK G + ECISQP+HETGLCKNLLQEYAQKMNYAIP+Y
Sbjct: 61  LPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMY 120

Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
            C+KDE+ G+   FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++   +   S 
Sbjct: 121 VCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANTDGVGEKSI 180

Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
           GNTQLTV+P +K+GPE + NP+E     K KK RFK K L+ K PG ++   Q+++T  M
Sbjct: 181 GNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGNDQVEDTRGM 239

Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEI-EPIEREMPAVNDALPH 298
           E    +Q GS++ Q + S +Q   + +L++E   + +E +S + +    +  A  D +P 
Sbjct: 240 EVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTVAEGDPIPD 299

Query: 299 HIGGDSETIHSAATHCSDRSSNEASEMGTSSL---------AKEVNEVT 338
            I G+ +   + A+           E+G SS+         A EVN V+
Sbjct: 300 II-GNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVS 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/349 (55%), Positives = 246/349 (70%), Gaps = 13/349 (3%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           M +N+GF+GVSNCYVFKSRLQEYAQK G+PTP+Y+TIKEGP H P F+STVIV+DVRYDS
Sbjct: 1   MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGF NRKAAEQSAAEVALVELAK G + ECISQP+HETGLCKNLLQEYAQKMNYAIP+Y
Sbjct: 61  LPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMY 120

Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
            C+KDE+ G+   FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++   +   S 
Sbjct: 121 VCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANTDGVGEKSI 180

Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
           GNTQLTV+P +K+GPE + NP+E     K KK RFK K L+ K PG ++   Q+++T  M
Sbjct: 181 GNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGNDQVEDTRGM 239

Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEI-EPIEREMPAVNDALPH 298
           E    +Q GS++ Q + S +Q   + +L++E   + +E +S + +    +  A  D +P 
Sbjct: 240 EVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTVAEGDPIPD 299

Query: 299 HIGGDSETIHSAATHCSDRSSNEASEMGTSSL---------AKEVNEVT 338
            I G+ +   + A+           E+G SS+         A EVN V+
Sbjct: 300 II-GNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVS 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 187/281 (66%), Positives = 207/281 (73%), Gaps = 2/281 (0%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           MPTNE F  VSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV+DVRYDS
Sbjct: 1   MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGFFNRKAAEQSAAEVALVEL K   VN+ I+QP+HETGLCKNLLQEYAQKMNYA+P+Y
Sbjct: 61  LPGFFNRKAAEQSAAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMY 120

Query: 121 QCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
           QC+KDE  G+   FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSAS  S N  
Sbjct: 121 QCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASHASENQV 180

Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
           G+ QLTVLP RKR        +E  N PK KK RFK+K  K K    +M +   +N G  
Sbjct: 181 GHPQLTVLPCRKRATSSVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIG 240

Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 280
           E IN   E +  S    SG+    TE    E T + + G S
Sbjct: 241 EIINHEVE-THASVNGESGLLEKKTETFTSEATNNFENGVS 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa] gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 217/399 (54%), Positives = 262/399 (65%), Gaps = 47/399 (11%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           M TNEGFSGVSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV DVRYDS
Sbjct: 1   MLTNEGFSGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGFFNRKAAEQSAAEVALVELAK G++NE  SQP++ETGLCKNLLQEYAQKMNYAIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALVELAKAGEINESTSQPVNETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
           +C+KDE  G+ + F CTVEIG IRYIG + KTKKEAEIKAARTALLAIQSS S+     +
Sbjct: 121 ECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQSSGSD---KQS 177

Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
           G++QLTV+P RKRG E A+  EE  NVPK KK RFKKK+LK K    R++  Q + T  +
Sbjct: 178 GSSQLTVIPCRKRGVE-ASFQEEAENVPKPKKARFKKKMLKKKLSRDRINNAQSELTEKL 236

Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHH 299
            NI   Q GS+  Q + S I+G + ++  +E  M  Q+G+S+      E   +   L  +
Sbjct: 237 -NIVNGQSGSEADQTDKSAIRGANCKLXTMETQMTFQDGKSDTNLNGGETXDIEGVLTSY 295

Query: 300 IGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNE 359
             G+ E++  A+ + +  +    +E+   S A          GT  V             
Sbjct: 296 DAGNPESVQLASPNFNQSNHGTGAEISAKSNA----------GTGKV------------- 332

Query: 360 GTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESS 398
                             +GI+E ASM NNS L QI +S
Sbjct: 333 ------------------TGIIEVASMANNSVLAQIGAS 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 185/281 (65%), Positives = 208/281 (74%), Gaps = 2/281 (0%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           MPTNE F  VSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV+DVRYDS
Sbjct: 1   MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGFFNRKAAEQSAAEVALVEL K   VN+ I+QP+HETGLCKNLLQEYAQKMNYA+P+Y
Sbjct: 61  LPGFFNRKAAEQSAAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMY 120

Query: 121 QCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
           QC+KDE  G+   FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSAS+ S +  
Sbjct: 121 QCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQASQDQV 180

Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
           G+ QLTVLP RKR  E     +E  N PK KK RFK+K  K K    +M +   +N G  
Sbjct: 181 GHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIG 240

Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 280
            NIN   E +  S    SG+    +E    E   + + G S
Sbjct: 241 ANINHEVE-THASVNGESGVLEKKSETFTSEAANNFENGVS 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637537|gb|ACU19095.1| unknown [Glycine max]

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 185/281 (65%), Positives = 208/281 (74%), Gaps = 2/281 (0%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           MPTNE F  VSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV+DVRYDS
Sbjct: 1   MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGFFNRKAAEQSAAEVALVEL K   VN+ I+QP+HETGLCKNLLQEYAQKMNYA+P+Y
Sbjct: 61  LPGFFNRKAAEQSAAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMY 120

Query: 121 QCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
           QC+KDE  G+   FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSAS+ S +  
Sbjct: 121 QCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQASQDQV 180

Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
           G+ QLTVLP RKR  E     +E  N PK KK RFK+K  K K    +M +   +N G  
Sbjct: 181 GHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIG 240

Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 280
            NIN   E +  S    SG+    +E    E   + + G S
Sbjct: 241 ANINHEVE-THASVNGESGVLEKKSETFTSEAANNFENGVS 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula] gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 169/265 (63%), Positives = 200/265 (75%), Gaps = 7/265 (2%)

Query: 3   TNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLP 62
           TNE F GVSNCYVFKS+LQEYAQKAG+ TPVYET KEGPSHEP FRSTVI++DVRYDSL 
Sbjct: 4   TNEDFQGVSNCYVFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLA 63

Query: 63  GFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQC 122
           GFFNRKAAEQSAAEVAL+ELAK G+VN+ I+QP+HETGLCKNLLQEYAQKMNYA+PLYQ 
Sbjct: 64  GFFNRKAAEQSAAEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQS 123

Query: 123 RKDEA-SGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAG 180
           +KD+   G+   +SCTV+IG + YIGG AKTK+EAEIKAARTALLAIQ++AS+ S N  G
Sbjct: 124 KKDDTPPGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQTNASQASENQFG 183

Query: 181 NTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNME 240
           +  LTV+PSRKR  E     +E    PK+KK RFK K  K K    +  R    N G+  
Sbjct: 184 H--LTVIPSRKRATESI--ADEASKAPKSKKSRFKGKYSKKKPHRNKKRRINADNAGDEA 239

Query: 241 NINASQEGSKVSQANTSGIQGVSTE 265
            I+   E S  S  + SG+Q + +E
Sbjct: 240 KIDNGAE-SLASANDESGLQEIKSE 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis sativus]

 Score =  320 bits (820), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 158/219 (72%), Positives = 178/219 (81%), Gaps = 4/219 (1%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           MP  + F GVSNCYVFKSRLQEYAQK G+PTPVYETIKEGPSHEP F STVIV+DVRYDS
Sbjct: 1   MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDS 60

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
           LPGF NRKAAEQSAAEVAL+EL+K   +N  +SQP+HETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
           QC+KD+  G+   FSCTVEIG IRYIG  AKTKKEAEIKAARTALLAIQS  + LS  S 
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSV 180

Query: 180 GNTQLTVLPS--RKRGPEVANNPEETVNVPKAKKGRFKK 216
              QLTV+PS  RK   + +  P+ T + P+AKKGRFK+
Sbjct: 181 NQVQLTVIPSCKRKEAADCSVKPKSTAS-PRAKKGRFKR 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa] gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 174/200 (87%), Gaps = 5/200 (2%)

Query: 8   SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
           SGVSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV +VRYDSLPGFFNR
Sbjct: 1   SGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNR 60

Query: 68  KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEA 127
           KAAEQSAAEVALVELAK G++NE  SQP+HETGLCKNLLQEYAQKMNYAIPLY+C+KDE 
Sbjct: 61  KAAEQSAAEVALVELAKAGQINESTSQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDET 120

Query: 128 SGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTV 186
            G+ + F CTVEIG IRYIG +AKTKKEAEIKAARTALLAIQSS S+     +GN+QLTV
Sbjct: 121 PGRGLVFKCTVEIGGIRYIGASAKTKKEAEIKAARTALLAIQSSGSD---KPSGNSQLTV 177

Query: 187 LPSRKRGPEVANNPEETVNV 206
           +P RKRG E +   EE  N+
Sbjct: 178 IPCRKRGVETSVQ-EEMANI 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
TAIR|locus:2024407	419	HYL1 "HYPONASTIC LEAVES 1" [Ar	0.940	0.937	0.400	5.5e-61
UNIPROTKB|Q0IQN6	424	DRB8 "Double-stranded RNA-bind	0.583	0.575	0.456	7.7e-48
TAIR|locus:2057491	434	DRB2 "dsRNA-binding protein 2"	0.308	0.297	0.290	1.2e-08
TAIR|locus:2829928	359	DRB3 "dsRNA-binding protein 3"	0.308	0.359	0.274	6e-08
TAIR|locus:2163016	393	DRB5 "dsRNA-binding protein 5"	0.308	0.328	0.282	1.1e-07
TAIR|locus:2081620	355	DRB4 "double-stranded-RNA-bind	0.428	0.504	0.256	5.6e-05

TAIR|locus:2024407 HYL1 "HYPONASTIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 168/419 (40%), Positives = 220/419 (52%)

Query:     1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
             M + +  SGVSNCYVFKSRLQEYAQK  +PTPVYE +KEGPSH+  F+STVI+D VRY+S
Sbjct:     1 MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query:    61 LPGFFNRXXXXXXXXXXXXXXXXXXGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
             LPGFFNR                   ++++C+SQP+HETGLCKNLLQEYAQKMNYAIPLY
Sbjct:    61 LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query:   121 QCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQSSASELSGNSA 179
             QC+K E  G+V QF+CTVEIG I+Y                   LLAIQS       N  
Sbjct:   121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANY- 179

Query:   180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQL---QNT 236
              NTQLTVLP  K+  + A   +ETV   KA+K +FKKK  K KR   +     +   Q T
Sbjct:   180 -NTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKKKAQKGKRTVAKNPEDIIIPPQPT 238

Query:   237 GNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDAL 296
              + +N  + +  +  +   +S + G+     A  G+++ +  + E  P   E P+  + L
Sbjct:   239 DHCQNDQSEKIETTPNLEPSSCMNGLKE---AAFGSVETE--KIETTP-NLEPPSCMNGL 292

Query:   297 PHHIGGDSETIHSAATHCSDRSS--NEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALA 354
                  G  ET     T   +  S  N   E    S+  E  E TP +  SS  C    L 
Sbjct:   293 KEAAFGSVETEKIETTPNLEPPSCMNGLKEAAFGSVETEKIETTPNLEPSS--C-MNGL- 348

Query:   355 KEVNEGTPNEGTSTALTEEVNEPS---GIMEAA--SMTNNS--TLGQIESSCVIPGINQ 406
             KE   G+  E      T  +  PS   G+ EAA  S+      T   +ESS  + G+ +
Sbjct:   349 KEAAFGSV-ETEKIETTPNLEPPSCMNGLKEAAFGSVETEKIETTPNLESSSCMSGLKE 406

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IMP

GO:0031054 "pre-miRNA processing" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0015030 "Cajal body" evidence=IDA

GO:0035198 "miRNA binding" evidence=IDA

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0051607 "defense response to virus" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010589 "leaf proximal/distal pattern formation" evidence=IMP

UNIPROTKB|Q0IQN6 DRB8 "Double-stranded RNA-binding protein 8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 116/254 (45%), Positives = 141/254 (55%)

Query:    10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRXX 69
             V NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++  YDSLPGFFNR  
Sbjct:    28 VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query:    70 XXXXXXXXXXXXXXXXGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
                                N  I   + ETGLCKNLLQEYAQKMNYAIP Y C K  ASG
Sbjct:    88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145

Query:   130 KVQFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQSSASELSGNSAGNTQLTVLPS 189
                F CTVEIG I+Y                   LLAIQ   SE S N A  T+  V+P 
Sbjct:   146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQ-SEGSANGA--TKYIVVPG 202

Query:   190 RKRGPEVANNPEETVNVPKAKKGRFKKKILK---MKRPGGRMD--RTQLQNTGNMENINA 244
             ++ G EV   P ET    K KKG FKKK  K   MK+ G  +D  + + +  G+  + + 
Sbjct:   203 KRVGKEVEKRPIETPKPLKVKKGGFKKKWNKRKFMKKDGQAVDVEKDEARVAGDAHDSDV 262

Query:   245 SQEGSKVSQANTSG 258
               + + ++Q  + G
Sbjct:   263 LMQPTVITQEASCG 276

GO:0003725 "double-stranded RNA binding" evidence=IDA

TAIR|locus:2057491 DRB2 "dsRNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 38/131 (29%), Positives = 65/131 (49%)

Query:    15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRXXXXXXX 74
             ++K++LQE AQ++    P Y  I+EGP H P F++TV  +   ++S P + +        
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFES-PQYCSTLRQAEHS 59

Query:    75 XXXXXXXXXXX-GKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
                         G  +   ++ + ETG+ KNLLQE AQ++   +P Y   +     +  F
Sbjct:    60 AAEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVF 119

Query:   134 SCTVEIGDIRY 144
             + TVE+  I +
Sbjct:   120 TGTVELAGITF 130

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2829928 DRB3 "dsRNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 36/131 (27%), Positives = 62/131 (47%)

Query:    15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRXXXXXXX 74
             ++K++LQE AQ++    P Y   +EGP H P F+++V  +   ++S P + +        
Sbjct:     1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFES-PTYCSTLRQAEHS 59

Query:    75 XXXXXXXXXXX-GKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
                         G      ++ + ETG+ KNLLQE A +    +P+Y   +        F
Sbjct:    60 AAEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119

Query:   134 SCTVEIGDIRY 144
             SCTVE+  + +
Sbjct:   120 SCTVELAGMSF 130

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2163016 DRB5 "dsRNA-binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 37/131 (28%), Positives = 65/131 (49%)

Query:    15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRXXXXXXX 74
             ++K++LQE AQ++    P Y  I+EGP H P F+++V  +   ++S P + +        
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFES-PTYCSTLRQAEHA 59

Query:    75 XXXXXXXXXXXGKVNECISQPI-HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
                           ++ ++  I  ETG+ KNLLQE A +    +P+Y   +  +     F
Sbjct:    60 AAEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119

Query:   134 SCTVEIGDIRY 144
             SCTVE+  + +
Sbjct:   120 SCTVELAGMTF 130

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2081620 DRB4 "double-stranded-RNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 52/203 (25%), Positives = 76/203 (37%)

Query:    14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRXXXXXX 73
             +V+K +LQ YA +  +  PVY   +EGP H P FR  V      + S   FF        
Sbjct:     3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSE-FFP------- 54

Query:    74 XXXXXXXXXXXXGKVNECISQPIHETGL---CKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
                          K+      P    G+    KNLLQE AQK +  +P Y       S  
Sbjct:    55 ---TLKSAEHAAAKIAVASLTPQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHA 111

Query:   131 VQFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQSSASELSGNSAGNTQLTVLPSR 190
               F+ TVE     +                    ++I++      GNS   T    LPS 
Sbjct:   112 PTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN------GNS-NQTGSPTLPSE 164

Query:   191 KR---GPEVANNPEETVNVPKAK 210
             ++      V ++P+E  + P +K
Sbjct:   165 RQEDVNSNVKSSPQEIHSQPSSK 187

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0060145 "viral gene silencing in virus induced gene silencing" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0051607 "defense response to virus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	418
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	4e-16
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	3e-15
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	4e-15
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	2e-14
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	3e-14
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	2e-13
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	2e-12
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	3e-12
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	1e-11
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	6e-09
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	6e-09
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	4e-06
TIGR04238	201	TIGR04238, seadorna_dsRNA, seadornavirus double-st	2e-05
PRK12371	235	PRK12371, PRK12371, ribonuclease III; Reviewed	4e-05

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           +K+ LQE+AQ  G P P Y  IKE GP H+  F   V V+   Y    G  ++K AEQ+A
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKG-KSKKEAEQNA 212

Query: 75  AEVAL 79
           A+ AL
Sbjct: 213 AKAAL 217

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           K+LLQE AQK    +P Y+  ++E      +F+  V +G      G   +KKEA+  AA 
Sbjct: 3   KSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAE 62

Query: 162 TALLAI 167
            AL  +
Sbjct: 63  AALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 69.2 bits (170), Expect = 4e-15
 Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           KS LQE AQK G P P YE ++E GP H P F   V V         G  ++K A+Q+A
Sbjct: 2  PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEG-SSKKEAKQNA 60

Query: 75 AEVALVEL 82
          AE AL +L
Sbjct: 61 AEAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
           K+LLQE  QK     P     ++       F+ TV +   +Y  G   +KKEA+  AA  
Sbjct: 2   KSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAEK 61

Query: 163 AL 164
           AL
Sbjct: 62  AL 63

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 71.7 bits (177), Expect = 3e-14
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           +K+RLQE  Q  G+P P YE +KE GP+H+  F   V V+        G  ++K AEQ+A
Sbjct: 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTG-SSKKEAEQAA 218

Query: 75  AEVALVELAKL 85
           A+ AL +L + 
Sbjct: 219 AKQALKKLKEK 229

Length = 229

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
          KS LQE  QK G   P     +EGP H P F  TV V+  +Y +  G  ++K A+Q AAE
Sbjct: 2  KSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTG-SSKKEAKQLAAE 60

Query: 77 VAL 79
           AL
Sbjct: 61 KAL 63

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 33/67 (49%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
          KS LQE AQK  +P P YE +KE GP H P F  TV V   R     G  ++K A+Q AA
Sbjct: 2  KSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGS-SKKEAKQRAA 59

Query: 76 EVALVEL 82
          E AL  L
Sbjct: 60 EAALRSL 66

Length = 67

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           K+LLQE AQK     P Y+  K+E      +F+ TV++G  R   G   +KKEA+ +AA 
Sbjct: 2   KSLLQELAQKRKL-PPEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAAE 60

Query: 162 TAL 164
            AL
Sbjct: 61  AAL 63

Length = 67

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
            K+RLQE  Q  G+  P Y  +K EGP+H+  F   V V      +  G  ++K AEQ+A
Sbjct: 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKG-RSKKEAEQAA 221

Query: 75  AEVALVELAKLGK 87
           AE AL +L     
Sbjct: 222 AEQALKKLGVKEP 234

Length = 235

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           K  LQE+AQ     +P Y+  K+E      +F+  V +    Y  G  K+KKEAE  AA+
Sbjct: 155 KTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAK 214

Query: 162 TALLAI 167
            AL  +
Sbjct: 215 AALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 55.9 bits (136), Expect = 6e-09
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           K  LQE  Q     +P Y+  K+E  +   +F+  V +       G   +KKEAE  AA+
Sbjct: 161 KTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAK 220

Query: 162 TALLAIQS 169
            AL  ++ 
Sbjct: 221 QALKKLKE 228

Length = 229

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEA-SGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           K  LQE  Q     +P Y+  K+E  +   +F+  V +G      G  ++KKEAE  AA 
Sbjct: 164 KTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAE 223

Query: 162 TALLA 166
            AL  
Sbjct: 224 QALKK 228

Length = 235

>gnl|CDD|234517 TIGR04238, seadorna_dsRNA, seadornavirus double-stranded RNA-binding protein

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             LQE A K G+  PVYE + KEGP H P F   +  +D+         ++K AE+ AA
Sbjct: 3  VGMLQELAVKRGLELPVYEKVGKEGPDHAPTFTIKLTANDIEVIEAAS--SKKQAEKLAA 60

Query: 76 EVALVELAKLGKVNE 90
               ++ + G +  
Sbjct: 61 ATIYEDMKENGLLEV 75

This protein family occurs in the seadornavirus virus group, with an N-terminal domain for binding double-stranded RNA, is designated VP12 in Banna virus, VP8 in Kadipiro virus, and VP11 in Liao ning virus. Length = 201

>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 16/71 (22%)

Query: 17  KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
           K+ LQE+A      TPVY      GP H+P F   V         + GF        +++
Sbjct: 164 KTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEV--------EVKGFAPETGEGRSKR 215

Query: 69  AAEQSAAEVAL 79
           AAEQ AAE  L
Sbjct: 216 AAEQVAAEKML 226

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	418
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.93
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.6
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.6
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.59
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.58
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.58
smart00358	67	DSRM Double-stranded RNA binding motif.	99.57
smart00358	67	DSRM Double-stranded RNA binding motif.	99.57
PHA03103	183	double-strand RNA-binding protein; Provisional	99.53
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.52
PHA03103	183	double-strand RNA-binding protein; Provisional	99.52
PRK12371	235	ribonuclease III; Reviewed	99.5
PRK12371	235	ribonuclease III; Reviewed	99.47
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.45
PRK14718	467	ribonuclease III; Provisional	99.41
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.4
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.38
PRK14718	467	ribonuclease III; Provisional	99.38
PRK12372	413	ribonuclease III; Reviewed	99.36
PRK12372	413	ribonuclease III; Reviewed	99.33
PRK00102	229	rnc ribonuclease III; Reviewed	99.3
PRK00102	229	rnc ribonuclease III; Reviewed	99.3
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.28
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.25
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.24
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.24
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.17
KOG4334	650	consensus Uncharacterized conserved protein, conta	99.06
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.41
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.31
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	98.03
KOG4334	650	consensus Uncharacterized conserved protein, conta	97.8
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.4
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.29
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	97.28
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	96.54
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	96.37
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	95.98
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	91.3
PF14954	252	LIX1: Limb expression 1	91.24
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	90.07
PF14954	252	LIX1: Limb expression 1	87.72
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	80.69

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.93  E-value=8.5e-25  Score=217.49  Aligned_cols=155  Identities=30%  Similarity=0.368  Sum_probs=136.4

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCC---
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVN---   89 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~---   89 (418)
                      +.|+|.|||||.+++. .|.|++.+ +||.|.+.|.++|.|.... +.|.| +|||.|+|.||..+|..|....+..   
T Consensus        38 KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~-a~GeG-~sKK~AKh~AA~~~L~~lk~l~~l~~v~  114 (339)
T KOG3732|consen   38 KSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEIT-ATGEG-KSKKLAKHRAAEALLKELKKLPPLANVR  114 (339)
T ss_pred             CChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeE-EecCC-CchhHHHHHHHHHHHHHHhcCCCccccc
Confidence            8999999999999998 66999998 8999999999999998654 79999 9999999999999999999876531   


Q ss_pred             -c---------cCC---CCC----CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCC
Q 014809           90 -E---------CIS---QPI----HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKT  151 (418)
Q Consensus        90 -s---------~~s---~P~----~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~S  151 (418)
                       +         ...   ++.    ....|++++|+||||+++|..|.|+++.+.|++| +.|+++|.+.+. ..+|.|.|
T Consensus       115 k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~s  193 (339)
T KOG3732|consen  115 KDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPS  193 (339)
T ss_pred             cCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCch
Confidence             0         110   111    2478999999999999999999999999999888 999999999875 47799999


Q ss_pred             HHHHHHHHHHHHHHHHHhccc
Q 014809          152 KKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus       152 KKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ||.||++||.+||+.|....+
T Consensus       194 KKiAKRnAAeamLe~l~~~~~  214 (339)
T KOG3732|consen  194 KKIAKRNAAEAMLESLGFVKP  214 (339)
T ss_pred             HHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999987665

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.60  E-value=4.7e-15  Score=112.57  Aligned_cols=67  Identities=34%  Similarity=0.416  Sum_probs=62.4

Q ss_pred             ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809          101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI  167 (418)
Q Consensus       101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L  167 (418)
                      |||+.|+||||++++..|.|.+....|+.| +.|+|.|.|+|..+..|.|.|||+||+.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            689999999999999999999976678888 9999999999988899999999999999999999875

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.60  E-value=5.2e-15  Score=112.32  Aligned_cols=67  Identities=46%  Similarity=0.567  Sum_probs=62.8

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809           15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus        15 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      |||+.|+||||++++..|.|++.. .|+.|.+.|.|.|.|+|..++.|.| .|||+|++.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEG-SSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHhC
Confidence            799999999999999999999966 8999999999999999988899999 899999999999999865

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.59  E-value=3.3e-15  Score=138.97  Aligned_cols=70  Identities=23%  Similarity=0.319  Sum_probs=66.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      .+||||.||||||+++..+ .|.++. .||+|.+.|++.|+|+|..++.|.| +|||+|||+||+.||..|..
T Consensus       107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G-~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA02701        107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASG-CSKKLARHAACADALTILIN  177 (183)
T ss_pred             CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEe-CCHHHHHHHHHHHHHHHHHh
Confidence            4799999999999999888 899887 7999999999999999999999999 99999999999999998865

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.58  E-value=9.7e-15  Score=111.86  Aligned_cols=66  Identities=36%  Similarity=0.515  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809          102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI  167 (418)
Q Consensus       102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L  167 (418)
                      ||+.|+|||+++++.+|+|.+....++++ +.|.|+|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence            68999999999999999988876555566 8999999999999999999999999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.58  E-value=6.5e-15  Score=137.01  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=66.3

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ...|||+.||||||+++..+ .|.+....||+| +.|++.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus       106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA02701        106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN  177 (183)
T ss_pred             CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999988 898887789999 999999999999999999999999999999999999854

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.57  E-value=1.2e-14  Score=110.73  Aligned_cols=65  Identities=38%  Similarity=0.473  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809          102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI  167 (418)
Q Consensus       102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L  167 (418)
                      ||+.|+||||++++ .|.|.+....|+.| +.|+|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence            68999999999999 89999987678888 9999999999999999999999999999999999887

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.57  E-value=1.2e-14  Score=110.72  Aligned_cols=65  Identities=49%  Similarity=0.596  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809           16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus        16 pKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      ||+.|+||||++++ .|.|++.. .|++|.+.|+|.|+|+|..++.|.| .|||+|++.||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEG-SSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEecc-CCHHHHHHHHHHHHHHhc
Confidence            78999999999999 89999987 8999999999999999988899999 899999999999999876

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.53  E-value=2.5e-14  Score=133.47  Aligned_cols=70  Identities=24%  Similarity=0.375  Sum_probs=63.2

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      .+|||+.||||||+++... .|.+...||+|.+.|++.|+|+|..+++|.| +|||+|||+||+.||..|..
T Consensus       108 ~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G-~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        108 DKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIG-STKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             cCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHHh
Confidence            4699999999999999875 5554458999999999999999999999999 89999999999999999865

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.52  E-value=3.5e-14  Score=108.81  Aligned_cols=66  Identities=47%  Similarity=0.653  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHcCCCCCeEEEeecCCCCC-CcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809           16 FKSRLQEYAQKAGIPTPVYETIKEGPSHE-PWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus        16 pKS~LQE~cQK~g~~lP~Yev~~eGP~H~-~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      ||+.|+||||++++.+|.|.+...+++|. +.|.|.|+|+|..++.|.| .|||+|++.||+.||..|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEG-SSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEecc-CCHHHHHHHHHHHHHHhC
Confidence            79999999999998887777767666655 8999999999999999999 899999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.52  E-value=3.9e-14  Score=132.20  Aligned_cols=70  Identities=23%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ...|||+.||||||+++... +|. ....||.| +.|++.|.|+|..|++|.|+|||+|||.||+.||..|..
T Consensus       107 K~kNpKS~LQE~~Qk~~~~~-y~~-i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        107 KDKNPCTVINEYCQITSRDW-SIN-ITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             ccCChhHHHHHHHHHhCCCe-EEE-EEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence            35689999999999999885 554 44579999 999999999999999999999999999999999999854

>PRK12371 ribonuclease III; Reviewed

Probab=99.50  E-value=5.7e-14  Score=135.36  Aligned_cols=72  Identities=35%  Similarity=0.369  Sum_probs=67.7

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ...|||+.||||||+.+...|.|.++. .||+|.+.|+|.|+|+|..+++|.| +|||+||+.||+.||+.|..
T Consensus       159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G-~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEG-RSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHhhh
Confidence            467999999999999988899999986 8999999999999999999999999 99999999999999998865

>PRK12371 ribonuclease III; Reviewed

Probab=99.47  E-value=1.5e-13  Score=132.45  Aligned_cols=73  Identities=23%  Similarity=0.242  Sum_probs=67.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||+.||||||+.+...|.|.+....||.| +.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus       159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~~  232 (235)
T PRK12371        159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGVW  232 (235)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhhh
Confidence            356999999999999999999999987789999 9999999999999999999999999999999999998654

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.45  E-value=2.6e-13  Score=131.26  Aligned_cols=74  Identities=38%  Similarity=0.455  Sum_probs=69.4

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ....|||+.||||||.++..+|.|.++. +||+|++.|++.|.++|..++.|.| +|||+|||.||+.||..|...
T Consensus       158 ~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G-~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         158 DQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKG-RSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             ccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecc-cCHHHHHHHHHHHHHHHhccc
Confidence            3458999999999999999999999998 7999999999999999999999999 999999999999999998754

>PRK14718 ribonuclease III; Provisional

Probab=99.41  E-value=4.9e-13  Score=138.66  Aligned_cols=75  Identities=33%  Similarity=0.373  Sum_probs=68.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEE-eecccCCcChHHHHHHHHHHHHHHHHhcCC
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVR-YDSLPGFFNRKAAEQSAAEVALVELAKLGK   87 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~-~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~   87 (418)
                      ..+|||+.||||||++++.+|+|.++. .||+|.+.|++.|+|+|.. ++.|.| .|||+|||.||+.||+.|....+
T Consensus       149 ~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G-~SKKeAEQ~AAk~AL~kL~~~~~  225 (467)
T PRK14718        149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSG-ASRRAAEQAAAKKALDEVTAVAP  225 (467)
T ss_pred             cccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEc-CCHHHHHHHHHHHHHHHhcccch
Confidence            467999999999999999999999987 8999999999999999954 479999 89999999999999999985544

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.40  E-value=9.3e-13  Score=127.39  Aligned_cols=73  Identities=30%  Similarity=0.355  Sum_probs=68.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||+.||||||+++...|.|.++...||.| +.|++.|.++|..++.|.|+|||+|||.||+.||..|...
T Consensus       159 ~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         159 QFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             cccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence            348999999999999999999999999889999 9999999999999999999999999999999999998754

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.38  E-value=4.4e-13  Score=134.26  Aligned_cols=157  Identities=25%  Similarity=0.257  Sum_probs=106.5

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCC
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVN   89 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~   89 (418)
                      ....||+++||||||+++|.+|.|+++. .|++|.+.|++.|.|.+.. .+|.| .|||.|+++||+.||+.|....+..
T Consensus       139 ~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~-~~GkG-~sKKiAKRnAAeamLe~l~~~~~~~  216 (339)
T KOG3732|consen  139 GQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT-EEGKG-PSKKIAKRNAAEAMLESLGFVKPNK  216 (339)
T ss_pred             ccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEeccee-eecCC-chHHHHHHHHHHHHHHHhccCCCCc
Confidence            4578999999999999999999999998 8999999999999999875 69999 9999999999999999998654310


Q ss_pred             ------ccCCCCC--------------------------------CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCc
Q 014809           90 ------ECISQPI--------------------------------HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV  131 (418)
Q Consensus        90 ------s~~s~P~--------------------------------~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~  131 (418)
                            .....|.                                ....+|...|.+......+.. .|..... -....
T Consensus       217 ~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~~~e~~f~~-~y~d~~~-~t~sg  294 (339)
T KOG3732|consen  217 TPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEIAPENQFTV-TYPDIEE-LTLSG  294 (339)
T ss_pred             CcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhccccccccccccccccccccchhe-ecchhHH-hhhhh
Confidence                  0000110                                012233333333322222221 1111100 00013


Q ss_pred             eEEEEEEECCEEe--eecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809          132 QFSCTVEIGDIRY--IGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus       132 ~Ft~tV~I~G~~~--g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      .|.|.|..++...  ..|.+.|-..|+..||+.+|++|....
T Consensus       295 ~~~~~~e~s~~~~~~~~~s~~t~~~s~~~aa~~~L~yL~~~~  336 (339)
T KOG3732|consen  295 QNQCLVELSTSPATVCHGSSITPPSAQSEAAHNALEYLKIMA  336 (339)
T ss_pred             HHHHHHHhcCCCceeeeccCCCCCcccchhHHHHHHHHHHHh
Confidence            4445555544332  357889999999999999999998764

>PRK14718 ribonuclease III; Provisional

Probab=99.38  E-value=1.3e-12  Score=135.58  Aligned_cols=74  Identities=27%  Similarity=0.387  Sum_probs=67.6

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..|||++||||||++++.+|.|.++.+.||.| +.|++.|+|+|. .++.|.|.|||+|||.||+.||+.|....+
T Consensus       150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~~~  225 (467)
T PRK14718        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAVAP  225 (467)
T ss_pred             ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcccch
Confidence            46999999999999999999999988789999 999999999985 458999999999999999999999985443

>PRK12372 ribonuclease III; Reviewed

Probab=99.36  E-value=1.8e-12  Score=133.37  Aligned_cols=75  Identities=33%  Similarity=0.354  Sum_probs=68.1

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEE-eecccCCcChHHHHHHHHHHHHHHHHhcCC
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVR-YDSLPGFFNRKAAEQSAAEVALVELAKLGK   87 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~-~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~   87 (418)
                      ..+|||+.||||||++++.+|+|.++. .||+|.+.|++.|+|+|.. ++.|.| .|||+|||.||+.||+.|....+
T Consensus       149 ~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G-~SKKeAEQ~AAr~AL~kL~~~~~  225 (413)
T PRK12372        149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSG-ASRRAAEQAAAKKALDEVMAAAP  225 (413)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEe-CCHHHHHHHHHHHHHHHHhcccc
Confidence            467999999999999999999999987 8999999999999999854 478999 89999999999999999985443

>PRK12372 ribonuclease III; Reviewed

Probab=99.33  E-value=4.4e-12  Score=130.64  Aligned_cols=74  Identities=27%  Similarity=0.394  Sum_probs=67.3

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..|||+.||||||++++..|.|.+....||.| +.|+|.|+|+|. .++.|.|.|||+|||.||+.||+.|....+
T Consensus       150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~~~  225 (413)
T PRK12372        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAAP  225 (413)
T ss_pred             cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhcccc
Confidence            46999999999999999999999988889999 999999999985 557999999999999999999999985433

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.30  E-value=8.3e-12  Score=117.86  Aligned_cols=73  Identities=40%  Similarity=0.558  Sum_probs=68.0

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ....|||+.|+||||++++..|.|+++. .|+.|.+.|+|.|+++|..++.|.| .|||+||+.||+.||+.|..
T Consensus       155 ~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        155 DLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTG-SSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             cccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHhh
Confidence            3567999999999999999999999877 7999999999999999999999999 89999999999999998864

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.30  E-value=9.6e-12  Score=117.41  Aligned_cols=72  Identities=29%  Similarity=0.349  Sum_probs=67.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ...|||+.|+||||++++..|.|.+....|+.| +.|+|+|.|+|..++.|.|.|||+||+.||+.||+.|+.
T Consensus       156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence            457999999999999999999999887778888 999999999999999999999999999999999999864

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.28  E-value=1.2e-11  Score=101.19  Aligned_cols=69  Identities=33%  Similarity=0.424  Sum_probs=61.2

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEee---------cccCCcChHHHHHHHHHHHHHHH
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYD---------SLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~g---------sG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      +++++.|+|+|++++|+.|.|++.. .||+|.+.|.+.|.|.+..+.         -+.+..+||+|+..||+.+|..|
T Consensus         1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L   79 (80)
T PF14709_consen    1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL   79 (80)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999986 899999999999999987762         12444799999999999999887

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.25  E-value=1.8e-11  Score=114.59  Aligned_cols=70  Identities=43%  Similarity=0.587  Sum_probs=65.7

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      ...|||+.|+||||++++..|.|+++. .|++|.+.|.|.|+++|..+++|.| .|||+||+.||+.||+.|
T Consensus       150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g-~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKG-KSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHhC
Confidence            578999999999999999899999986 6999999999999999999999999 899999999999999864

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.24  E-value=2.5e-11  Score=113.67  Aligned_cols=70  Identities=34%  Similarity=0.432  Sum_probs=65.3

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI  167 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L  167 (418)
                      ...|||+.|+||||++++..|.|.+....|++| +.|.|.|.++|..++.|.|.|||+||+.||+.||+.|
T Consensus       150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence            467999999999999999999999987678888 9999999999999999999999999999999999865

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.24  E-value=2.7e-11  Score=99.21  Aligned_cols=69  Identities=30%  Similarity=0.376  Sum_probs=60.7

Q ss_pred             CChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEee----------ecccCCHHHHHHHHHHHHHHHHH
Q 014809          100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYI----------GGAAKTKKEAEIKAARTALLAIQ  168 (418)
Q Consensus       100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g----------~G~G~SKKeAKQ~AAk~AL~~L~  168 (418)
                      .++++.|+|+|++++|+.|.|++....||+| ..|.+.|.|.+..+.          .-...+||+||..||+.||+.|.
T Consensus         1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            3689999999999999999999987789999 999999999877652          23468999999999999999873

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=99.17  E-value=1.3e-10  Score=123.19  Aligned_cols=128  Identities=27%  Similarity=0.327  Sum_probs=107.3

Q ss_pred             CeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCCc-----------cCC------
Q 014809           32 PVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNE-----------CIS------   93 (418)
Q Consensus        32 P~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~s-----------~~s------   93 (418)
                      +.|..+. .||.|.+.|.+.|.|+|..+.       ||.|++.||+.|+..+....+...           ..+      
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF   82 (542)
T ss_pred             cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence            6888876 899999999999999997642       899999999999999887654310           000      


Q ss_pred             -CCCCCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           94 -QPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        94 -~P~~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                       .-.....|++++|+||++     -++|.+....+|.| +.|.|.|.|+|+.|..| |+|||+||+.||+.||+.|....
T Consensus        83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence             001257899999999999     56888888889999 99999999999999877 99999999999999999998766


Q ss_pred             c
Q 014809          172 S  172 (418)
Q Consensus       172 ~  172 (418)
                      .
T Consensus       157 ~  157 (542)
T KOG2777|consen  157 E  157 (542)
T ss_pred             C
Confidence            4

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=99.06  E-value=5.8e-10  Score=116.28  Aligned_cols=166  Identities=19%  Similarity=0.158  Sum_probs=120.1

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCC-
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVN-   89 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~-   89 (418)
                      .+.+..+..|+||+|+....+|.|++.+. ......|...|.+|+..|++|.| .|||.|+..||+.+|+.|...-... 
T Consensus       372 pngks~vCiLhEy~q~~lk~~pvyef~e~-~n~stpysa~v~~d~~~yGsG~g-~sKK~Ak~~AAR~tLeiLIPd~~~~~  449 (650)
T KOG4334|consen  372 PNGKSKVCILHEYAQQCLKSLPVYEFAEN-DNNSTPYSAGVLPDLFPYGSGVG-ASKKTAKLVAARDTLEILIPDLRVSE  449 (650)
T ss_pred             CCCceeeehHHHHHHHHhhhcceeehhhc-cCCCCcccccccccccccccccc-cchHHHHHHHHHHHHHHhcchhhhcc
Confidence            45678888999999999999999988762 13356799999999999999999 9999999999999999986532110 


Q ss_pred             ----c---------c----------CCCCC-------CCCCChhHHHHHHHHHc-CCC-C-CeEEEeeccCCCCceEEEE
Q 014809           90 ----E---------C----------ISQPI-------HETGLCKNLLQEYAQKM-NYA-I-PLYQCRKDEASGKVQFSCT  136 (418)
Q Consensus        90 ----s---------~----------~s~P~-------~e~~n~Ks~LQE~cQK~-~l~-i-P~Y~~~e~~GP~h~~Ft~t  136 (418)
                          +         .          +..|-       .....+-++|.++.+++ +|. + -.+++.. .+.....|++.
T Consensus       450 ~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~-~~nqkse~im~  528 (650)
T KOG4334|consen  450 DNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIG-NGNQKSEVIMI  528 (650)
T ss_pred             cccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccC-CCCccceeEee
Confidence                0         0          00110       12446677888877766 331 1 1222221 22222778777


Q ss_pred             EEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcccccc--CCCCCCc
Q 014809          137 VEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS--GNSAGNT  182 (418)
Q Consensus       137 V~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~~~~--~~~~g~~  182 (418)
                      |   |+...++++++|++++|.|.+..|+.|+.....|.  ++.+|.-
T Consensus       529 ~---Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~  573 (650)
T KOG4334|consen  529 L---GKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL  573 (650)
T ss_pred             e---ccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence            6   77778899999999999999999999998877644  6666644

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.41  E-value=8e-07  Score=92.34  Aligned_cols=73  Identities=27%  Similarity=0.330  Sum_probs=67.2

Q ss_pred             CCCCChHHHHHHHHHHcCCC------CCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809           11 SNCYVFKSRLQEYAQKAGIP------TPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA   83 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~------lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~   83 (418)
                      ..|.+||+.||.||.....+      +|.|.+.. .||.+.+.|++.|+++|+.+++|.| +|-|.|+..||+.||+.+.
T Consensus       424 q~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G-~nik~Ae~rAA~~ALe~~~  502 (533)
T KOG1817|consen  424 QDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVG-SNIKQAEMRAAMQALENLK  502 (533)
T ss_pred             hhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccC-chHhHHHHHHHHHHHHHHH
Confidence            35789999999999988543      79999988 8999999999999999999999999 9999999999999999988


Q ss_pred             h
Q 014809           84 K   84 (418)
Q Consensus        84 ~   84 (418)
                      .
T Consensus       503 ~  503 (533)
T KOG1817|consen  503 M  503 (533)
T ss_pred             h
Confidence            6

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.31  E-value=2e-06  Score=89.51  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=68.8

Q ss_pred             CCCChhHHHHHHHHHcCCC------CCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYA------IPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~------iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      .+.|+++.||.||..+..+      +|.|.+....||.+ +.|.+.|+++|+.+++|+|+|.|+|+..||..||+.+...
T Consensus       425 ~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~d  504 (533)
T KOG1817|consen  425 DWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMD  504 (533)
T ss_pred             hccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhh
Confidence            6789999999999988764      89999988889998 9999999999999999999999999999999999999875


Q ss_pred             cc
Q 014809          171 AS  172 (418)
Q Consensus       171 ~~  172 (418)
                      ..
T Consensus       505 F~  506 (533)
T KOG1817|consen  505 FS  506 (533)
T ss_pred             hH
Confidence            54

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=98.03  E-value=1.8e-05  Score=84.67  Aligned_cols=67  Identities=33%  Similarity=0.406  Sum_probs=60.9

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      .+||++.|+||.+     -+.|++.. .||.|.+.|.+.|.|||..|..| | +|||+|++.||..||+.|....
T Consensus        89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~-~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-G-RSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-C-cchHHHHHHHHHHHHHHHHhcc
Confidence            6899999999998     45888887 89999999999999999998666 9 9999999999999999998765

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=97.80  E-value=1.5e-05  Score=83.97  Aligned_cols=73  Identities=25%  Similarity=0.315  Sum_probs=64.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ....+..|+||+|+-...+|.|++.+ .......|.+.|.+++..||.|.|.|||.||..||+.+|+.|-....
T Consensus       374 gks~vCiLhEy~q~~lk~~pvyef~e-~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~  446 (650)
T KOG4334|consen  374 GKSKVCILHEYAQQCLKSLPVYEFAE-NDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLR  446 (650)
T ss_pred             CceeeehHHHHHHHHhhhcceeehhh-ccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhh
Confidence            45678899999999999999999875 33344889999999999999999999999999999999999976654

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.00033  Score=70.38  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=67.7

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC--ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK--VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h--~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...+|..+|-++|+++++.-|.|.+..++|-..  |.|.+-++-+-+.++.|.|.|-|.|++.||+.||..|..-.+
T Consensus       230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp  306 (333)
T KOG3769|consen  230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP  306 (333)
T ss_pred             cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence            457899999999999999999999988777554  999999999998999999999999999999999999876553

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.29  E-value=0.00031  Score=70.56  Aligned_cols=73  Identities=21%  Similarity=0.185  Sum_probs=65.5

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-c-CCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-E-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-e-GP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ..+|...|-++|+++++.-|+|+++. . +....|.|.|.++-|.+.++.|.| .|-|.|++.||.+||..+-...
T Consensus       231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~G-esl~~A~e~AA~dAL~k~y~~t  305 (333)
T KOG3769|consen  231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQG-ESLKLAEEQAARDALIKLYDHT  305 (333)
T ss_pred             ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcc-hHHHHHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999997 4 457789999999999999999999 8999999999999999876543

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=97.28  E-value=0.00046  Score=77.57  Aligned_cols=153  Identities=24%  Similarity=0.222  Sum_probs=116.9

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEe-ecccCCcChHHHHHHHHHHHHHHHHhcCCCC----
Q 014809           15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY-DSLPGFFNRKAAEQSAAEVALVELAKLGKVN----   89 (418)
Q Consensus        15 npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~-gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~----   89 (418)
                      |-|..|-.||-|+.+. |.|++..+++....+|.|.|.+.+..| ..|.. .+||+|+.+||+...+.|...+..+    
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~s-tnkKda~knac~dfv~ylvr~Gk~n~~d~   79 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNS-TNKKDAATNAAQDFCQYLVREGKMQQSDI   79 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecc-cccchhhHHHHHHHHHHhhhhccccccCC
Confidence            5688999999999987 899999999999999999999998876 24555 7899999999999999987654210    


Q ss_pred             ------------------------------c--cCCCCC-----------------------------------------
Q 014809           90 ------------------------------E--CISQPI-----------------------------------------   96 (418)
Q Consensus        90 ------------------------------s--~~s~P~-----------------------------------------   96 (418)
                                                    +  ...+|.                                         
T Consensus        80 p~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~  159 (1282)
T KOG0921|consen   80 PTLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAE  159 (1282)
T ss_pred             cccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcc
Confidence                                          0  000000                                         


Q ss_pred             ----CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHH
Q 014809           97 ----HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLA  166 (418)
Q Consensus        97 ----~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I-----~G~~~g~G~G~SKKeAKQ~AAk~AL~~  166 (418)
                          ....|.|..|++|-|++.+ .-.|..+. .+|.| +.|+.+..|     +-.....+.|.+||.|....|...+..
T Consensus       160 ihg~wt~eN~K~~ln~~~q~~~~-~~~y~~~~-~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrq  237 (1282)
T KOG0921|consen  160 IHGNWTMENAKKALNEYLQKMRI-QDNYKYTI-VGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQ  237 (1282)
T ss_pred             ccCCCCcchhHHHHhHHHhhhhh-ccccceee-cCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHH
Confidence                0356889999999999999 44566553 57777 999987765     223345688999999999999988777


Q ss_pred             HHhcc
Q 014809          167 IQSSA  171 (418)
Q Consensus       167 L~~~~  171 (418)
                      |-...
T Consensus       238 m~hl~  242 (1282)
T KOG0921|consen  238 LFHLN  242 (1282)
T ss_pred             HHHHh
Confidence            75544

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=96.54  E-value=0.004  Score=68.55  Aligned_cols=147  Identities=18%  Similarity=0.094  Sum_probs=97.5

Q ss_pred             CChHHHHHHHHHHcCCCCCeEE------Eee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYE------TIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Ye------v~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      .|+...+.-+-|.+.  -..|+      ++. .+|.|.++|+.+|.+|+..+ +..| .|||.|+-.||++-|+......
T Consensus       370 ~d~nak~mhl~grRh--rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~-~a~g-ps~~~~~wh~~~k~lq~~~~p~  445 (816)
T KOG3792|consen  370 NDPNAKEMHLKGRRH--RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPA-EAEG-PSKKTAKWHAARKRLQNEGRPT  445 (816)
T ss_pred             CCcchHHhhhhcccc--cceeccccCCCceeccCCcccchhhhhhhhcCCcc-ccCC-cccccchHHHHHHHhhccCCCc
Confidence            344445555544443  23888      655 89999999999999999886 7789 9999999999999998763110


Q ss_pred             ----CC----Ccc-----------CC-------------CCCC---------------CCCChhHHHHHHHHHcCCCCCe
Q 014809           87 ----KV----NEC-----------IS-------------QPIH---------------ETGLCKNLLQEYAQKMNYAIPL  119 (418)
Q Consensus        87 ----~~----~s~-----------~s-------------~P~~---------------e~~n~Ks~LQE~cQK~~l~iP~  119 (418)
                          .+    .++           .+             .|.+               ..++....|+|-   +.-  -.
T Consensus       446 ga~~r~~~~ge~~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~rg--~k  520 (816)
T KOG3792|consen  446 GAAQRFGRMGEDPASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK---RRG--DK  520 (816)
T ss_pred             cccccccccCCCcccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---ccc--cc
Confidence                00    000           00             0100               123444444443   221  24


Q ss_pred             EEEeeccC-CCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809          120 YQCRKDEA-SGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus       120 Y~~~e~~G-P~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      |+...+.+ -.| ++|...|...|+.+ .|.+.+++-|+..|+-.|++.+...
T Consensus       521 ~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~l  572 (816)
T KOG3792|consen  521 YELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTSGL  572 (816)
T ss_pred             eecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCccccc
Confidence            55543334 567 99999999999874 5999999999999888777666544

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=96.37  E-value=0.016  Score=48.43  Aligned_cols=66  Identities=24%  Similarity=0.260  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHcCC-----CCCeEEEeeccCCCCceEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809          103 KNLLQEYAQKMNY-----AIPLYQCRKDEASGKVQFSCTVEIGDI----RYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus       103 Ks~LQE~cQK~~l-----~iP~Y~~~e~~GP~h~~Ft~tV~I~G~----~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      +++|+.||++.--     ..|.|.+....    ..|.|+|.+-..    .+......||+.||+.||-.|+..|....-
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~----~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~   76 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIG----SGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE   76 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE------G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcC----CcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            6789999998743     35889887643    389999988321    122236799999999999999999988764

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=95.98  E-value=0.024  Score=47.36  Aligned_cols=69  Identities=29%  Similarity=0.252  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCC-----CCCeEEEeecCCCCCCcEEEEEEECCEE-e--ecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           17 KSRLQEYAQKAGI-----PTPVYETIKEGPSHEPWFRSTVIVDDVR-Y--DSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        17 KS~LQE~cQK~g~-----~lP~Yev~~eGP~H~~~Ftv~V~V~G~~-~--gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      ++.|+.||++..-     ..|.|.+...+.    .|.|+|.+-... +  -.|....||+.|++.||-.|...|.+.+..
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~l   77 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGEL   77 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence            5789999999743     258999987433    799999985311 1  133333799999999999999999998765


Q ss_pred             C
Q 014809           89 N   89 (418)
Q Consensus        89 ~   89 (418)
                      +
T Consensus        78 d   78 (90)
T PF03368_consen   78 D   78 (90)
T ss_dssp             T
T ss_pred             c
Confidence            4

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=91.30  E-value=0.083  Score=55.82  Aligned_cols=71  Identities=31%  Similarity=0.289  Sum_probs=61.8

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      .+..||..|..||-+.+..-|.|+++..   .++.|...+.+.|..|.++.+..++|.|+|.||..+|......
T Consensus       373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~  443 (477)
T KOG2334|consen  373 KWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW  443 (477)
T ss_pred             CCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence            3578999999999999999999999873   3578999999999999887777899999999999999866543

>PF14954 LIX1: Limb expression 1

Probab=91.24  E-value=0.46  Score=46.43  Aligned_cols=64  Identities=23%  Similarity=0.265  Sum_probs=45.4

Q ss_pred             CCCChhHHHHHHHHHc---CCC-----CCeEEEeeccCCCC-ceEEEEEEECC-EEeee-cccCCHHHHHHHHHHHHHH
Q 014809           98 ETGLCKNLLQEYAQKM---NYA-----IPLYQCRKDEASGK-VQFSCTVEIGD-IRYIG-GAAKTKKEAEIKAARTALL  165 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~---~l~-----iP~Y~~~e~~GP~h-~~Ft~tV~I~G-~~~g~-G~G~SKKeAKQ~AAk~AL~  165 (418)
                      ...|-+..||||=|..   +..     +..|+.    .|.. |.|.|-|++-| -.|+. -.+.||-+|++.||+.||-
T Consensus        19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs----~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALm   93 (252)
T PF14954_consen   19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYES----VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALM   93 (252)
T ss_pred             ccchHHHHHHHHHHHHHhccccCCCCCeeeeec----cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHH
Confidence            3568899999987643   333     344543    4444 88999999954 34443 3689999999999998873

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=90.07  E-value=0.53  Score=54.09  Aligned_cols=70  Identities=24%  Similarity=0.395  Sum_probs=58.6

Q ss_pred             ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEee-ecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809          101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYI-GGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus       101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g-~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      |-|..|-.||.++.+. |.|++..+ ++.. .+|.|.|.+.+..|. .|...+||.|+..||+.-++.|-....
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~-~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk   73 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSE-GRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGK   73 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhh-cccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhcc
Confidence            5688999999999998 99998764 5554 999999999876654 467788999999999999999976554

>PF14954 LIX1: Limb expression 1

Probab=87.72  E-value=1.6  Score=42.81  Aligned_cols=68  Identities=26%  Similarity=0.303  Sum_probs=47.0

Q ss_pred             CCChHHHHHHHHHHc---CCCC-----CeEEEeecCCCCCCcEEEEEEECCEE-eecccCCcChHHHHHHHHHHHHHHHH
Q 014809           13 CYVFKSRLQEYAQKA---GIPT-----PVYETIKEGPSHEPWFRSTVIVDDVR-YDSLPGFFNRKAAEQSAAEVALVELA   83 (418)
Q Consensus        13 ~~npKS~LQE~cQK~---g~~l-----P~Yev~~eGP~H~~~Ftv~V~V~G~~-~gsG~G~~SKKeAEq~AAk~AL~~L~   83 (418)
                      .-|-+..||||=|.+   +..+     +.|+.   .|+..+.|.|=|++.|-. |+.=.-+.||-+|+++||+.||..-.
T Consensus        20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs---~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSv   96 (252)
T PF14954_consen   20 DVNVVEALQEFWQMKQSRGADLKSEALVVYES---VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSV   96 (252)
T ss_pred             cchHHHHHHHHHHHHHhccccCCCCCeeeeec---cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHH
Confidence            347788999965543   3333     34544   456677899999987533 33323348999999999999997643

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=80.69  E-value=0.67  Score=49.23  Aligned_cols=71  Identities=23%  Similarity=0.160  Sum_probs=60.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeec-ccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGG-AAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G-~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      .+..++..|.+||-+.+..-|.|++...   ..+.|...+.++|..|..+ +-++||.|+|.||..+|.......
T Consensus       373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e  444 (477)
T KOG2334|consen  373 KWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWE  444 (477)
T ss_pred             CCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcch
Confidence            4578999999999999999999998753   2388999999999999877 459999999999999987765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	418
2l2n_A	103	Backbone 1h, 13c, And 15n Chemical Shift Assignment		4e-30
2l2m_A	77	Solution Structure Of The Second Dsrbd Of Hyl1 Leng		2e-19
3adg_A	73	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		3e-18
3adj_A	76	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		6e-16

>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 71/100 (71%)
Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           M + +  SGVSNCYVFKSRLQEYAQK  +PTPVYE +KEGPSH+  F+STVI+D VRY+S
Sbjct: 4   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 63
Query: 61  LPGFFNRXXXXXXXXXXXXXXXXXXGKVNECISQPIHETG 100
           LPGFFNR                   ++++C+SQP+HETG
Sbjct: 64  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETG 103

>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 96  IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXX 154
           +HETGLCKNLLQEYAQKMNYAIPLYQC+K E  G+V QF+CTVEIG I+Y          
Sbjct: 3   MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKD 62
Query: 155 XXXXXXXXXLLAIQS 169
                    LLAIQS
Sbjct: 63  AEISAGRTALLAIQS 77

>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 73

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 48/54 (88%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
          +VFKSRLQEYAQK  +PTPVYE +KEGPSH+  F+STVI+D VRY+SLPGFFNR
Sbjct: 3  HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR 56

>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 76

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXX 158
           GLCKNLLQEYAQKMNYAIPLYQC+K E  G+V QF+CTVEIG I+Y              
Sbjct: 4   GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEIS 63
Query: 159 XXXXXLLAIQS 169
                LLAIQS
Sbjct: 64  AGRTALLAIQS 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	418
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	1e-41
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	5e-12
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	2e-10
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	2e-33
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	3e-10
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	3e-25
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	4e-11
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	1e-23
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	6e-20
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	2e-22
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	3e-09
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	3e-21
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	2e-12
1x49_A	97	Interferon-induced, double-stranded RNA- activated	4e-17
1x49_A	97	Interferon-induced, double-stranded RNA- activated	2e-10
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	6e-17
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	1e-10
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	3e-16
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	3e-08
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	6e-16
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	6e-10
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	7e-16
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	2e-08
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	1e-15
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	2e-08
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	3e-15
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	5e-09
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	3e-15
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	1e-08
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	2e-14
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	5e-08
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	3e-14
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	3e-08
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	7e-14
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	2e-06
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	1e-13
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	7e-08
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	2e-13
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	5e-12
2dix_A	84	Interferon-inducible double stranded RNA- dependen	2e-13
2dix_A	84	Interferon-inducible double stranded RNA- dependen	8e-09
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	2e-12
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	1e-07
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	6e-11
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	8e-09
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	1e-09
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	2e-08
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	8e-09
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	2e-06
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	2e-08
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	9e-07
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	2e-08
1x48_A	88	Interferon-induced, double-stranded RNA- activated	4e-08
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	5e-08
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	4e-07
2l33_A	91	Interleukin enhancer-binding factor 3; structural	7e-07
2l33_A	91	Interleukin enhancer-binding factor 3; structural	1e-04
1uil_A	113	Double-stranded RNA-binding motif; structural geno	2e-06
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	4e-06
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	6e-05
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	1e-04
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	4e-04
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	3e-04

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score =  144 bits (364), Expect = 1e-41
 Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 8/163 (4%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           F   L  Y QK G+     E    GP H+  F   VI+D   +       ++K A+ +AA
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRSKKEAKNAAA 73

Query: 76  EVALVELAKLGKVNECISQPIHETGLC------KNLLQEYAQKMNYAIPLYQCRKDEASG 129
           ++A+  L K  K    +      +           L+   AQK    +   QC       
Sbjct: 74  KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGP 133

Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
           +  F    ++G   Y  G   TK+EA+  AA+ A L I S  +
Sbjct: 134 EG-FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET 175

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 13  CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQ 72
              +   +   AQK  +    YE    G      F     +    Y    G   ++ A+Q
Sbjct: 103 MGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGS-TKQEAKQ 160

Query: 73  SAAEVALVELAKLGKVNEC 91
            AA++A +++      + C
Sbjct: 161 LAAKLAYLQILSEETGSGC 179

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 17/81 (20%), Positives = 29/81 (35%)

Query: 98  ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEI 157
             G     L  Y QK    +   +          +F+  V I    +  G  ++KKEA+ 
Sbjct: 11  SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKN 70

Query: 158 KAARTALLAIQSSASELSGNS 178
            AA+ A+  +      +S   
Sbjct: 71  AAAKLAVEILNKEKKAVSPLL 91

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score =  120 bits (302), Expect = 2e-33
 Identities = 73/100 (73%), Positives = 87/100 (87%)

Query: 1   MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
           M + +  SGVSNCYVFKSRLQEYAQK  +PTPVYE +KEGPSH+  F+STVI+D VRY+S
Sbjct: 4   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 63

Query: 61  LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETG 100
           LPGFFNRKAAEQSAAEVAL ELAK  ++++C+SQP+HETG
Sbjct: 64  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETG 103

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY-IGGAAKTKKEAEIKAAR 161
           K+ LQEYAQK     P+Y+  K+  S K  F  TV +  +RY        +K AE  AA 
Sbjct: 20  KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 79

Query: 162 TALLAIQSSAS 172
            AL  +  S+ 
Sbjct: 80  VALRELAKSSE 90

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 96.9 bits (242), Expect = 3e-25
 Identities = 57/71 (80%), Positives = 64/71 (90%)

Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
          +VFKSRLQEYAQK  +PTPVYE +KEGPSH+  F+STVI+D VRY+SLPGFFNRKAAEQS
Sbjct: 3  HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 62

Query: 74 AAEVALVELAK 84
          AAEVAL ELAK
Sbjct: 63 AAEVALRELAK 73

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY-IGGAAKTKKEAEIKAAR 161
           K+ LQEYAQK     P+Y+  K+  S K  F  TV +  +RY        +K AE  AA 
Sbjct: 6   KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 65

Query: 162 TALLAI 167
            AL  +
Sbjct: 66  VALREL 71

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 92.7 bits (231), Expect = 1e-23
 Identities = 53/75 (70%), Positives = 58/75 (77%), Gaps = 1/75 (1%)

Query: 98  ETGLCKNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAE 156
             GLCKNLLQEYAQKMNYAIPLYQC+K E      QF+CTVEIG I+Y G A +TKK+AE
Sbjct: 2   SHGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 61

Query: 157 IKAARTALLAIQSSA 171
           I A RTALLAIQS  
Sbjct: 62  ISAGRTALLAIQSDT 76

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 82.7 bits (205), Expect = 6e-20
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
          + K+ LQEYAQK     P+Y+  K E       F  TV +  ++Y        +K AE S
Sbjct: 5  LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAAT-RTKKDAEIS 63

Query: 74 AAEVALVEL 82
          A   AL+ +
Sbjct: 64 AGRTALLAI 72

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 94.0 bits (233), Expect = 2e-22
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 29/182 (15%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
               L EY Q+     PVY   +     EP F ++V +D V Y S     ++K A+  AA
Sbjct: 24  EVCILHEYMQRVLKVRPVYNFFECENPSEP-FGASVTIDGVTYGSGTA-SSKKLAKNKAA 81

Query: 76  EVALVELAKLGKVNECISQPIHETGL------------------------CKNLLQEYAQ 111
              L  L           +P     L                           +L E  +
Sbjct: 82  RATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLK 141

Query: 112 KMNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170
           + N+ +     + +   GK Q     +  G      G  K K+  +  A++  L  +   
Sbjct: 142 R-NHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVR-GWCKNKRVGKQLASQKILQLLHPH 199

Query: 171 AS 172
             
Sbjct: 200 VK 201

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
             +L EY Q++    P+Y   + E   +  F  +V I  + Y  G A +KK A+ KAAR 
Sbjct: 25  VCILHEYMQRVLKVRPVYNFFECENPSE-PFGASVTIDGVTYGSGTASSKKLAKNKAARA 83

Query: 163 ALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETV 204
            L  +     + +          +        E +   E T 
Sbjct: 84  TLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTS 125

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 87.7 bits (217), Expect = 3e-21
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
            K  L E+ ++  +P PVYET++     +  F S V V + +Y S     ++K AEQ+AA
Sbjct: 28  PKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAA 85

Query: 76  EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQK 112
            V    L   G     + +      L K   +   Q 
Sbjct: 86  IVC---LRSQGLPEGRLGE--ESPSLNKRKREAPDQD 117

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY-IGGAAKTKKEAEIKAAR 161
           K  L E+ ++     P+Y+  +   +    F   V + + +Y      K+KK AE  AA 
Sbjct: 29  KMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86

Query: 162 TALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVP 207
             L +       L   S          ++++      +P    + P
Sbjct: 87  VCLRSQGLPEGRLGEESPS-------LNKRKREAPDQDPGGPRSGP 125

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
          +  +L +Y Q  G+    Y+ +   GP H+  F   V++D+  +    G  +++ A  +A
Sbjct: 16 YMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKG-RSKQEARNAA 73

Query: 75 AEVALVELAKLGKVNECISQP 95
          A++A+  L    KV+   S P
Sbjct: 74 AKLAVDILDNENKVDCHTSGP 94

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 15/80 (18%), Positives = 31/80 (38%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
            + L +Y Q    AI   +          +F+  V I +  +     ++K+EA   AA+ 
Sbjct: 17  MDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKL 76

Query: 163 ALLAIQSSASELSGNSAGNT 182
           A+  + +        S  ++
Sbjct: 77  AVDILDNENKVDCHTSGPSS 96

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 74.9 bits (184), Expect = 6e-17
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           K+ L  +  K  +  P YE    G  +   F   V V+   Y  +    N+K A+ +AA
Sbjct: 8  IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 76 EVALVELAKLGKVNE 90
             +  L ++ +V  
Sbjct: 67 RDFVNYLVRINEVKS 81

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIG-GAAKTKKEAEIKAAR 161
           KN L  +  K     P Y+ R      + +F C V +    Y G G +  KK+A+  AAR
Sbjct: 9   KNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 162 TAL 164
             +
Sbjct: 68  DFV 70

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           +K+ LQE  Q      P Y  ++      +  F   V V+     +  G   +K AE+ A
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKG-RTKKEAEKEA 239

Query: 75  AEVALVELAK 84
           A +A  +L K
Sbjct: 240 ARIAYEKLLK 249

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
           K  LQE  Q  +   P Y               F   V +       G  +TKKEAE +A
Sbjct: 182 KTALQEIVQSEHKVPPEY--ILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEA 239

Query: 160 ARTALLAIQSSAS 172
           AR A   +    S
Sbjct: 240 ARIAYEKLLKERS 252

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           +K+ LQE     G+  P Y     GP H+  F + V+V D  Y S  G  ++K AEQ AA
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVG-RSKKEAEQKAA 222

Query: 76  EVALVEL 82
             A   L
Sbjct: 223 AAAWKAL 229

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
           K  LQE         P Y      ++G     +F+  V + D  Y  G  ++KKEAE KA
Sbjct: 165 KTSLQELTAARGLGAPSYL---VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKA 221

Query: 160 ARTALLAIQSSASELSGNSAG 180
           A  A  A++   + + G ++ 
Sbjct: 222 AAAAWKALEVLDNAMPGKTSA 242

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           +K++LQE  Q     TP YET++  GP H   F   +++D           ++K A+Q A
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIA-GSKKEAQQMA 237

Query: 75  AEVALVELAKL 85
           A++AL +L  L
Sbjct: 238 AKIALEKLGAL 248

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
           K  LQE  Q      P Y      A G     QF   + +         A +KKEA+  A
Sbjct: 180 KTKLQEITQGKIGQTPQY--ETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMA 237

Query: 160 ARTALLAIQS 169
           A+ AL  + +
Sbjct: 238 AKIALEKLGA 247

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 74.9 bits (185), Expect = 1e-15
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
           +K+ LQE  QK     P Y  I   GP H+  F     + + R        ++K AEQ A
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGK--SKKEAEQRA 209

Query: 75  AEVALVELAK 84
           AE  +  L +
Sbjct: 210 AEELIKLLEE 219

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
           K +LQE  QK     P Y  R     G   K +F    +I + R +G   K+KKEAE +A
Sbjct: 153 KTILQEITQKRWKERPEY--RLISVEGPHHKKKFIVEAKIKEYRTLG-EGKSKKEAEQRA 209

Query: 160 ARTALLAIQSS 170
           A   +  ++ S
Sbjct: 210 AEELIKLLEES 220

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             LQE A + G   P Y   +E GP H+  F  T  V+           +++ A++ AA
Sbjct: 3  VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGT--SKQVAKRVAA 60

Query: 76 EVALVEL 82
          E  L + 
Sbjct: 61 EKLLTKF 67

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 51.4 bits (124), Expect = 5e-09
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
              LQE A +  + +P Y   ++  SG   K +F+ T  +      G +  +K+ A+  A
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQE--SGPPHKREFTITCRVETFVETG-SGTSKQVAKRVA 59

Query: 160 ARTALLAIQS 169
           A   L   ++
Sbjct: 60  AEKLLTKFKT 69

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             LQE   + G   P Y   +E GP+H   F  T  V+           ++K A+++AA
Sbjct: 18 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGT--SKKLAKRNAA 75

Query: 76 EVALVELAKL 85
             L+ +  +
Sbjct: 76 AKMLLRVHTV 85

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
              LQE   +  + +P Y   ++  SG   + +F+ T  +     IG +  +KK A+  A
Sbjct: 18  VGALQELVVQKGWRLPEYTVTQE--SGPAHRKEFTMTCRVERFIEIG-SGTSKKLAKRNA 74

Query: 160 ARTALLAIQS 169
           A   LL + +
Sbjct: 75  AAKMLLRVHT 84

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQSA 74
             LQE   + G   P Y   +E GP+H   F  T  V+        G   ++K A+++A
Sbjct: 19 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIE---IGSGTSKKLAKRNA 75

Query: 75 AEVALVELAKL 85
          A   L+ ++  
Sbjct: 76 AAKMLLRVSGP 86

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
              LQE   +  + +P Y   ++  SG   + +F+ T  +     IG +  +KK A+  A
Sbjct: 19  VGALQELVVQKGWRLPEYTVTQE--SGPAHRKEFTMTCRVERFIEIG-SGTSKKLAKRNA 75

Query: 160 ARTALLAIQSSAS 172
           A   LL +   +S
Sbjct: 76  AAKMLLRVSGPSS 88

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQSA 74
           SRL +  Q      P Y  + E G      F   V V +       G   N+K A+++A
Sbjct: 9  ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA---TGTGPNKKIAKKNA 65

Query: 75 AEVALVELAKLGKVNECISQP 95
          AE     L +LG       Q 
Sbjct: 66 AEAM---LLQLGYKASTSLQD 83

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
            + L +  Q      P Y    +     + +F   V++G+    G     KK A+  AA 
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATG-TGPNKKIAKKNAAE 67

Query: 162 TALLAIQSSASELSGNSAGNT 182
             LL +   AS    +S  ++
Sbjct: 68  AMLLQLGYKASTSLQDSGPSS 88

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           S++ E   K  +    ++ ++E GP+H   F +  IV  +  +       +K +++ AA
Sbjct: 10 ISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGEGN--GKKVSKKRAA 66

Query: 76 EVALVELAKL 85
          E  LVEL KL
Sbjct: 67 EKMLVELQKL 76

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
            + + E   K N     ++  ++E  G      F     +G I   G     KK ++ +A
Sbjct: 10  ISQVHEIGIKRNMT-VHFKVLREE--GPAHMKNFITACIVGSIVTEG-EGNGKKVSKKRA 65

Query: 160 ARTALLAIQS 169
           A   L+ +Q 
Sbjct: 66  AEKMLVELQK 75

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           S LQEY  + G  TPVY+ +K  G +H+P F   V V D          ++KAA+  AA
Sbjct: 17 ISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGP--SKKAAKHKAA 73

Query: 76 EVALVELAKLGKVNE 90
          EVAL  L     +  
Sbjct: 74 EVALKHLKGGSMLEP 88

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
            +LLQEY  +     P+Y   K E  + +  F+  V +GD    G    +KK A+ KAA 
Sbjct: 17  ISLLQEYGTR-IGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTG-QGPSKKAAKHKAAE 74

Query: 162 TALLAIQSSAS 172
            AL  ++  + 
Sbjct: 75  VALKHLKGGSM 85

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 86  GKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYI 145
           G   E +  P  ++     +L EY Q++    P+Y   + E   +  F  +V I  + Y 
Sbjct: 4   GSSGEFVINPNGKSE--VCILHEYMQRVLKVRPVYNFFECENPSE-PFGASVTIDGVTYG 60

Query: 146 GGAAKTKKEAEIKAARTAL 164
            G A +KK A+ KAAR  L
Sbjct: 61  SGTASSKKLAKNKAARATL 79

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
              L EY Q+     PVY   + E PS    F ++V +D V Y S     ++K A+  A
Sbjct: 18 EVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTA-SSKKLAKNKA 74

Query: 75 AEVALVEL 82
          A   L  L
Sbjct: 75 ARATLEIL 82

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             L EY  K     PVYE  +     H P F   V V D+         ++K A+  AA
Sbjct: 11 IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGEGT--SKKLAKHRAA 67

Query: 76 EVALVELAK 84
          E A+  L  
Sbjct: 68 EAAINILKA 76

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
             +L EY  K    IP+Y+C + +       F+  V +GDI   G    +KK A+ +AA 
Sbjct: 11  IQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTG-EGTSKKLAKHRAAE 68

Query: 162 TALLAIQSSASE 173
            A+  ++++AS 
Sbjct: 69  AAINILKANASG 80

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 16 FKSRLQEYA-----QKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
           KS+LQ+       +      P+Y+T++  GPSH   +   V     R     G  + + 
Sbjct: 3  PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG-PSIQQ 61

Query: 70 AEQSAAEVALVEL 82
          AE  AA  AL + 
Sbjct: 62 AEMGAAMDALEKY 74

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 103 KNLLQEYA-----QKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAE 156
           K+ LQ+       +     IPLY+  +    S    ++  V     R   G   + ++AE
Sbjct: 4   KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAE 63

Query: 157 IKAARTAL 164
           + AA  AL
Sbjct: 64  MGAAMDAL 71

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
            K+ L E  Q   +   ++       +  P FR  V + D+  D   G  + + AE  AA
Sbjct: 256 AKNELAELLQINKLGHKLHY---RKLTEMPPFRVEVKIGDILLDEAEG-NSIREAEHRAA 311

Query: 76  EVALVELAKLGK 87
              L     L K
Sbjct: 312 MKVLENDELLRK 323

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
           KN L E  Q       L+  +  E      F   V+IGDI        + +EAE +AA  
Sbjct: 257 KNELAELLQINKLGHKLHYRKLTEMP---PFRVEVKIGDILLDEAEGNSIREAEHRAAMK 313

Query: 163 AL 164
            L
Sbjct: 314 VL 315

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 14  YVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQ 72
            V +S ++E  +      P          +++   R TV V         G  + + A+ 
Sbjct: 197 NVPRSPVRELLEM----EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGR-SYRIAKS 251

Query: 73  SAAEVALVEL 82
           +AA  AL  L
Sbjct: 252 AAARRALRSL 261

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 103 KNLLQEYAQKMNYAIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           ++ ++E  +      P        E +   +   TVE+       G  ++ + A+  AAR
Sbjct: 200 RSPVRELLEM----EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAAR 255

Query: 162 TALLAIQSS 170
            AL +++++
Sbjct: 256 RALRSLKAN 264

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             L E           YE I E G SH+  F   V VD  ++    G  N+K A+  AA
Sbjct: 10 VMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKFQGA-G-SNKKVAKAYAA 62

Query: 76 EVALVELAKLGKV 88
            AL +L     +
Sbjct: 63 LAALEKLFPDTPL 75

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
              L E  + + Y +      +   S   +F   VE+   ++ G A   KK A+  AA  
Sbjct: 10  VMELNEKRRGLKYEL----ISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALA 64

Query: 163 ALLAI 167
           AL  +
Sbjct: 65  ALEKL 69

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             L E           Y+ + E G SH   F  +V+VD   ++   G  N+K A+  AA
Sbjct: 7  VMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFFEGS-G-RNKKLAKARAA 59

Query: 76 EVALVELAKL 85
          + AL  +  L
Sbjct: 60 QSALATVFNL 69

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 45.3 bits (108), Expect = 9e-07
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG---KVQFSCTVEIGDIRYIGGAAKTKKEAEIKA 159
             +L E    + Y            SG      F  +V +    + G + + KK A+ +A
Sbjct: 7   VMILNELRPGLKYDFL-------SESGESHAKSFVMSVVVDGQFFEG-SGRNKKLAKARA 58

Query: 160 ARTALLAI 167
           A++AL  +
Sbjct: 59  AQSALATV 66

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 11/136 (8%), Positives = 38/136 (27%), Gaps = 11/136 (8%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
             ++  +           + ++ +           +  V  +       F  R     + 
Sbjct: 449 AVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTM-------FLERLRDIPAE 501

Query: 75  AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
             +    L         +S P     +  +++   A+ +    P +    ++ + K + +
Sbjct: 502 DMLDWYRLGIQFSHRSGLSGPGGVVSV-IDIMTHLARGLWLGSPGF--YVEQQTDKNESA 558

Query: 135 CTVEIGDIRYIGGAAK 150
           C   I  +     + +
Sbjct: 559 CPPTIPVLYIYHRSVQ 574

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 105 LLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
           L+  +AQK   ++   QC  +      +F C  +IG   Y  G+  TK+EA+  AA+ A 
Sbjct: 11  LVNSFAQKKKLSVNYEQCEPNS-ELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAY 69

Query: 165 LAIQSSASELSGNSA 179
             +  S  + +G S 
Sbjct: 70  QKLLKSPPKTAGTSG 84

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 18 SRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
           +L E       P   Y  + + GP H P F  +V V+   ++   G   +K A+  AAE
Sbjct: 11 MQLNEIK-----PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GP-TKKKAKLHAAE 63

Query: 77 VALVELAKL 85
           AL    + 
Sbjct: 64 KALRSFVQF 72

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 17  KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           + +             +Y+   + GP H P F  +V VD  +Y       ++K A   AA
Sbjct: 35  QPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGR--SKKVARIEAA 92

Query: 76  EVALVELAKL 85
             AL    + 
Sbjct: 93  ATALRSFIQF 102

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 18 SRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
            L E           YE I E G SH+  F   V VD  ++    G  N+K A+  AA 
Sbjct: 21 MELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKFQGA-G-SNKKVAKAYAAL 73

Query: 77 VALVEL 82
           AL +L
Sbjct: 74 AALEKL 79

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 105 LLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
            L E  + + Y +      +   S   +F   VE+   ++ G A   KK A+  AA  AL
Sbjct: 22  ELNEKRRGLKYEL----ISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAAL 76

Query: 165 LAIQSSASE 173
             +      
Sbjct: 77  EKLFPDTPL 85

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Length = 113

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 17  KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFF----NRKAAEQ 72
           K+RL +Y QK  I    Y+  + GP H   F + + +   +            N+K A Q
Sbjct: 29  KARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 73  SAAEVALVELAKLGKVNECISQP 95
           S A   + +L  LG +    S P
Sbjct: 88  SCALSLVRQLYHLGVIEAYSSGP 110

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
            RL +       P   Y+ + + GP H P F  +V VD   Y++  G  ++K A+   A
Sbjct: 22 LMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEAS-G-PSKKTAKLHVA 74

Query: 76 EVALVEL 82
             L  +
Sbjct: 75 VKVLQAM 81

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Length = 117

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           K +L      A +    Y T+K+  + +P       V D          N K A   AA
Sbjct: 10 AKRQLYSLIGYASL-RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 68

Query: 76 EVALVELAKLGKVNE 90
          E AL +   L    +
Sbjct: 69 ENALRDKKMLDFYAK 83

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 30  PTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV 88
           P   Y+ + E G SH   F  +V+VD   ++      N+K A+  AA+ AL  +  L  +
Sbjct: 172 PGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGR--NKKLAKARAAQSALATVFNLHLL 229

Query: 89  NE 90
             
Sbjct: 230 EH 231

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 18  SRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
            +L E       P   Y  + + GP H P F  +V V+   ++   G   +K A+  AAE
Sbjct: 11  MQLNEIK-----PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG-SG-PTKKKAKLHAAE 63

Query: 77  VALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNY 115
            AL    +    +E          +  +   + A   + 
Sbjct: 64  KALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDT 102

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Length = 94

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           K +L      A +    Y T+K+  + +P       V D          N K A   AA
Sbjct: 8  AKRQLYSLIGYASL-RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 76 EVALVELAKLGK 87
          E AL +   L  
Sbjct: 67 ENALRDKKMLDF 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	418
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	100.0
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.96
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.94
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.82
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.79
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.78
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.78
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.77
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.77
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.77
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.77
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.76
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.76
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.75
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.75
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.75
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.75
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.74
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.74
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.74
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.73
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.73
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.73
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.72
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.72
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.72
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.71
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.71
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.7
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.7
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.69
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.69
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.69
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.68
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.68
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.68
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.68
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.68
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.65
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.65
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.65
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.64
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.63
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.63
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.63
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.62
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.6
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.6
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.59
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.58
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.56
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.55
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.5
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.5
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.49
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.49
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.48
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.47
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.47
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.4
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.38
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.36
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.31
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.27
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.98
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.97
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.58
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.58
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	95.72
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	94.85
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	86.16
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	85.68
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	83.11

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=100.00  E-value=3.3e-33  Score=255.30  Aligned_cols=156  Identities=28%  Similarity=0.344  Sum_probs=136.2

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCCcc
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNEC   91 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~s~   91 (418)
                      ..|||+.||||||++++. |.|+++. +||+|.+.|++.|+|+|..++.|.| +|||+|||+||+.||..|.......++
T Consensus        12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G-~sKK~Aeq~AA~~al~~L~~~~~~~~p   89 (179)
T 1qu6_A           12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEG-RSKKEAKNAAAKLAVEILNKEKKAVSP   89 (179)
T ss_dssp             SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEEC-CSSHHHHHHHHHHHHHHHHSCCSCCSC
T ss_pred             CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCC-CCHHHHHHHHHHHHHHHHhcccccCCC
Confidence            368999999999999986 8999986 8999999999999999998999999 999999999999999999876543221


Q ss_pred             CCCC------CCCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHH
Q 014809           92 ISQP------IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL  164 (418)
Q Consensus        92 ~s~P------~~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL  164 (418)
                      ...+      .....||+++||||||++++.+ .|++. ..||+| +.|+|+|.|+|..|+.|.|+|||+||+.||+.||
T Consensus        90 ~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~-~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al  167 (179)
T 1qu6_A           90 LLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAY  167 (179)
T ss_dssp             SSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHH
T ss_pred             ccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEec-CcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHH
Confidence            1111      1146799999999999999987 89876 468999 9999999999998999999999999999999999


Q ss_pred             HHHHhccc
Q 014809          165 LAIQSSAS  172 (418)
Q Consensus       165 ~~L~~~~~  172 (418)
                      ..|.....
T Consensus       168 ~~L~~~~~  175 (179)
T 1qu6_A          168 LQILSEET  175 (179)
T ss_dssp             HHHHHCCC
T ss_pred             HHHhcccC
Confidence            99987654

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.4e-29  Score=239.22  Aligned_cols=157  Identities=20%  Similarity=0.162  Sum_probs=127.0

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      ....+|||+.||||||++++.+|.|+++. +||+  +.|+|.|+|+|..|+.|.| +|||+|||.||+.||..|....+.
T Consensus        18 ~~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G-~SKK~Aeq~AA~~aL~~L~~~~~~   94 (232)
T 2yt4_A           18 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTA-SSKKLAKNKAARATLEILIPDFVK   94 (232)
T ss_dssp             CCTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHHSTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCC-CCHHHHHHHHHHHHHHHHHhhccc
Confidence            34678999999999999999999999987 7987  9999999999999999999 999999999999999999764221


Q ss_pred             CccC-----------------CCCC-------CCCCChhHHHHHHHHHcCCCCCeEE--EeeccCCCC-ceEEEEEEECC
Q 014809           89 NECI-----------------SQPI-------HETGLCKNLLQEYAQKMNYAIPLYQ--CRKDEASGK-VQFSCTVEIGD  141 (418)
Q Consensus        89 ~s~~-----------------s~P~-------~e~~n~Ks~LQE~cQK~~l~iP~Y~--~~e~~GP~h-~~Ft~tV~I~G  141 (418)
                      ..+.                 ..+.       ....|||++||| ||++++++|.|.  +....||+| +.|+|+|.  +
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~  171 (232)
T 2yt4_A           95 QTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K  171 (232)
T ss_dssp             C--------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T
T ss_pred             cCCccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E
Confidence            0000                 0000       134699999999 999999999999  666679999 99999886  4


Q ss_pred             EEeeecccCCHHHHHHHHHHHHHHHHHhcccc
Q 014809          142 IRYIGGAAKTKKEAEIKAARTALLAIQSSASE  173 (418)
Q Consensus       142 ~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~~  173 (418)
                       .++.|.|+|||+|||.||+.||..|......
T Consensus       172 -~~~~G~G~sKK~Aeq~AA~~aL~~L~~~~~~  202 (232)
T 2yt4_A          172 -HTVRGWCKNKRVGKQLASQKILQLLHPHVKN  202 (232)
T ss_dssp             -EEEEEEESSHHHHHHHHHHHHHHHHSTTCCB
T ss_pred             -EEEEEEeCCHHHHHHHHHHHHHHHHHhhccc
Confidence             5678999999999999999999999876553

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.94  E-value=3.7e-26  Score=217.56  Aligned_cols=148  Identities=24%  Similarity=0.277  Sum_probs=124.3

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC---
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV---   88 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~---   88 (418)
                      ..+||+.|++|++.  +..|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||+||+.||..|......   
T Consensus         3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~al~~l~~~~~~~~~   78 (236)
T 2l3j_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSG-PTKKKAKLHAAEKALRSFVQFPNASEA   78 (236)
T ss_dssp             CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEE-SHHHHHHHHHHHHHHHHHTTCSSCSCC
T ss_pred             CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEec-CChHHHHHHHHHHHHHHHHhccccccc
Confidence            35899999999987  4679999987 89999999999999999886 9999 899999999999999999763210   


Q ss_pred             --------------C-cc-----------C-------------------------CC--------------CC------C
Q 014809           89 --------------N-EC-----------I-------------------------SQ--------------PI------H   97 (418)
Q Consensus        89 --------------~-s~-----------~-------------------------s~--------------P~------~   97 (418)
                                    . +.           .                         ..              |.      .
T Consensus        79 ~~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~  158 (236)
T 2l3j_A           79 HLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPP  158 (236)
T ss_dssp             CCSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCC
T ss_pred             hhhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCC
Confidence                          0 00           0                         00              00      1


Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||++||||     +..|.|+++.+.||.| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|...
T Consensus       159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence            347999999999     5789999988889999 99999999999986 8999999999999999999999753

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.82  E-value=1.8e-20  Score=158.31  Aligned_cols=98  Identities=72%  Similarity=1.120  Sum_probs=68.2

Q ss_pred             CCCCCCccCCCCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHH
Q 014809            1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALV   80 (418)
Q Consensus         1 ~~~~~~~~~~~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~   80 (418)
                      |++++........+|||+.||||||++++.+|.|+++.+||+|.+.|++.|+|+|..++.|.|++|||+|||+||+.||.
T Consensus         4 ~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~   83 (103)
T 2l2n_A            4 MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR   83 (103)
T ss_dssp             ---------------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHH
T ss_pred             chhhhhccccCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            67788888889999999999999999999999999998899999999999999999999999944999999999999999


Q ss_pred             HHHhcCCCCccCCCCCCC
Q 014809           81 ELAKLGKVNECISQPIHE   98 (418)
Q Consensus        81 ~L~~~~~~~s~~s~P~~e   98 (418)
                      .|.....+.+++..|+++
T Consensus        84 ~L~~~~~~~~~~~~~~~~  101 (103)
T 2l2n_A           84 ELAKSSELSQCVSQPVHE  101 (103)
T ss_dssp             HHHHHC------------
T ss_pred             HHhccccccccccccccc
Confidence            999888777777666543

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.79  E-value=2.9e-19  Score=141.28  Aligned_cols=70  Identities=80%  Similarity=1.142  Sum_probs=66.4

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA   83 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~   83 (418)
                      .|||+.||||||++++.+|.|+++.+||+|.+.|+|.|+|+|..++.|.|++|||+|||+||+.||..|.
T Consensus         3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            6999999999999999999999998899999999999999999999999945999999999999999884

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.78  E-value=3.7e-19  Score=141.97  Aligned_cols=70  Identities=33%  Similarity=0.426  Sum_probs=66.7

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      .|||+.||||||++++.+|.|+++. +||+|.+.|++.|+|+|..++.|.| +|||+|||.||+.||..|..
T Consensus         4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G-~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAAT-RTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCB-SSHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEecc-CCHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999987 8999999999999999999999999 99999999999999999864

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.78  E-value=6.1e-19  Score=140.76  Aligned_cols=71  Identities=76%  Similarity=1.179  Sum_probs=67.1

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ..|||+.||||||++++.+|.|+++...||+| +.|+|.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus         3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence            35899999999999999999999988789999 999999999999999999999999999999999999964

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=143.61  Aligned_cols=75  Identities=25%  Similarity=0.299  Sum_probs=69.0

Q ss_pred             CCCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809            9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus         9 ~~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ......|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| +|||+|||.||+.||..|...
T Consensus        10 ~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G-~SKK~Aeq~AA~~AL~~L~~~   85 (88)
T 3adl_A           10 LVPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSG-TSKKLAKRNAAAKMLLRVHTV   85 (88)
T ss_dssp             CCCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEee-CCHHHHHHHHHHHHHHHHHcc
Confidence            345568999999999999999999999987 899999999999999998 899999 999999999999999999753

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.77  E-value=6.3e-19  Score=137.80  Aligned_cols=67  Identities=28%  Similarity=0.392  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809           15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA   83 (418)
Q Consensus        15 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~   83 (418)
                      +||+.||||||++++.+|.|+++. +||+|.+.|++.|+|+|. ++.|.| +|||+|||.||+.||..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G-~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSG-TSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeec-CCHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999987 899999999999999998 999999 9999999999999999885

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.77  E-value=1.7e-18  Score=136.91  Aligned_cols=69  Identities=33%  Similarity=0.451  Sum_probs=65.4

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHH
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQ  168 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G-~SKKeAKQ~AAk~AL~~L~  168 (418)
                      ..|||+.||||||++++..|.|+++.+ ||+| +.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            369999999999999999999999875 9999 9999999999999999999 9999999999999999885

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.77  E-value=1.3e-18  Score=143.47  Aligned_cols=73  Identities=27%  Similarity=0.236  Sum_probs=68.0

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ++..+|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| +|||+|||.||+.||..|..
T Consensus         2 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G-~SKK~Aeq~AA~~AL~~L~~   75 (89)
T 1uhz_A            2 SSGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTG-PNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             CCSSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEee-CCHHHHHHHHHHHHHHHHhc
Confidence            34568999999999999999999999987 899999999999999996 899999 99999999999999999964

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.76  E-value=2.3e-18  Score=141.96  Aligned_cols=74  Identities=24%  Similarity=0.289  Sum_probs=68.6

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ....+|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| +|||+|||.||+.||..|...
T Consensus        12 ~~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G-~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           12 QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSG-TSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeee-CCHHHHHHHHHHHHHHHHHhh
Confidence            34568999999999999999999999987 899999999999999998 899999 999999999999999999753

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.76  E-value=1.9e-18  Score=135.03  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 014809          102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ  168 (418)
Q Consensus       102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~  168 (418)
                      ||+.||||||++++..|.|+++...||+| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|.
T Consensus         2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999987789999 999999999998 9999999999999999999999986

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.75  E-value=4e-18  Score=138.80  Aligned_cols=72  Identities=32%  Similarity=0.296  Sum_probs=66.7

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ...+|||+.||||||+++ ..|.|+++. +||+|.+.|+|.|+|+| .++.|.| +|||+|||+||+.||..|...
T Consensus         5 ~~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G-~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T 2dix_A            5 SSGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEG-TSKKLAKHRAAEAAINILKAN   77 (84)
T ss_dssp             CCCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECS-SCTTHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeee-CCHHHHHHHHHHHHHHHHhcc
Confidence            356899999999999998 689999987 89999999999999999 8899999 999999999999999999753

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.75  E-value=4.3e-18  Score=140.12  Aligned_cols=72  Identities=21%  Similarity=0.296  Sum_probs=67.1

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||+.||||||++++..|.|+++...||.| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|...
T Consensus        13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   85 (88)
T 3adl_A           13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV   85 (88)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence            457999999999999999999999988789999 999999999997 999999999999999999999999743

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.75  E-value=4.5e-18  Score=140.16  Aligned_cols=72  Identities=21%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||++||||||++++.+|.|+++...||.| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus        14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence            467999999999999999999999987789999 999999999998 999999999999999999999999743

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.75  E-value=1.3e-18  Score=142.25  Aligned_cols=70  Identities=29%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             CChHHHHHHHHHH-----cCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           14 YVFKSRLQEYAQK-----AGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        14 ~npKS~LQE~cQK-----~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      +|||+.||||||+     +++.+|.|+++. +||+|.+.|+|.|+|+|..++.|.| +|||+|||.||+.||..|..
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G-~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG-PSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEE-SSHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEee-CCHHHHHHHHHHHHHHHHhH
Confidence            5899999999998     467899999987 8999999999999999999999999 99999999999999987643

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.74  E-value=1.2e-18  Score=138.79  Aligned_cols=70  Identities=29%  Similarity=0.358  Sum_probs=65.7

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ...|||+.||||||++++. |.|+++. +||+|.+.|+|.|+|+| .++.|.| +|||+|||.||+.||..|..
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G-~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEG-NGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECC-CSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEee-CCHHHHHHHHHHHHHHHHhh
Confidence            4679999999999999998 9999987 89999999999999999 8899999 99999999999999998853

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.74  E-value=7.5e-18  Score=138.85  Aligned_cols=72  Identities=21%  Similarity=0.195  Sum_probs=67.1

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||++||||||++++..|.|+++...||+| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus         4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A            4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence            357999999999999999999999987789999 999999999996 899999999999999999999999744

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.74  E-value=8.4e-18  Score=136.87  Aligned_cols=72  Identities=28%  Similarity=0.462  Sum_probs=66.3

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      ...|||+.||||||+++ ..|.|+++.+.||.| +.|+|.|.|+| .++.|.|+|||+|||.||+.||..|....
T Consensus         6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T 2dix_A            6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA   78 (84)
T ss_dssp             CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence            45799999999999998 689999987789999 99999999999 88999999999999999999999997444

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.73  E-value=1.2e-17  Score=137.25  Aligned_cols=76  Identities=25%  Similarity=0.261  Sum_probs=68.9

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCC-cEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEP-WFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~-~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      +....|||+.||||||++++.+ .|+ ..+||+|.+ +|+|.|+|+|..++.|.| +|||+|||.||+.||..|....+.
T Consensus         2 ~~~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~~~~   78 (88)
T 1x48_A            2 SSGSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSG-VTKQEAKQLAAKEAYQKLLKSPPK   78 (88)
T ss_dssp             CSSSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEE-SSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4566899999999999999966 999 668999999 799999999999999999 999999999999999999876543

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.73  E-value=6.6e-18  Score=141.31  Aligned_cols=75  Identities=25%  Similarity=0.466  Sum_probs=68.8

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      ...|||+.||||||++++. |.|+++. .||+|.+.|+|.|+|+|..++.|.| +|||+|||.||+.||..|......
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~~~~   87 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKG-RSKQEARNAAAKLAVDILDNENKV   87 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEE-SSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEee-CCHHHHHHHHHHHHHHHHHhhcCC
Confidence            4579999999999999996 7999876 8999999999999999999999999 999999999999999999765543

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.73  E-value=4.5e-18  Score=139.07  Aligned_cols=70  Identities=23%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             CChhHHHHHHHHH-----cCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809          100 GLCKNLLQEYAQK-----MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus       100 ~n~Ks~LQE~cQK-----~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      .|||+.||||||+     +++..|.|+++.+.||+| +.|+|.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence            4899999999998     467899999988789999 999999999999999999999999999999999988754

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=137.70  Aligned_cols=74  Identities=41%  Similarity=0.476  Sum_probs=59.1

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ....+|||+.||||||+++. .|.|+++. +||+|.+.|++.|+|+|. ++.|.| +|||+|||.||+.||..|....
T Consensus        10 ~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G-~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           10 ANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQG-PSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             ---CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHC---
T ss_pred             cccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEe-CCHHHHHHHHHHHHHHHHHhcc
Confidence            34678999999999999985 89999976 899999999999999998 689999 9999999999999999987643

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.72  E-value=2.8e-18  Score=136.59  Aligned_cols=70  Identities=19%  Similarity=0.253  Sum_probs=65.6

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ...|||+.||||||++++. |.|.++...||+| +.|+|.|.|+| .++.|.|+|||+|||.||+.||..|..
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            3579999999999999999 9999987789999 99999999999 889999999999999999999999864

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.72  E-value=9.4e-18  Score=140.95  Aligned_cols=75  Identities=24%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECC-EEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDD-VRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G-~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      ...|||+.||||||++ +..|.|++..+||+|.+.|+|.|+|+| ..++.|.| +|||+|||.||+.||..|......
T Consensus         4 g~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~~~~   79 (99)
T 1whq_A            4 GSSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNS-TNKKDAQSNAARDFVNYLVRINEV   79 (99)
T ss_dssp             CCCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEE-SSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEecc-CCHHHHHHHHHHHHHHHHHhhCCC
Confidence            3579999999999999 889999995589999999999999999 68899999 999999999999999999876643

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.71  E-value=1.4e-17  Score=139.34  Aligned_cols=74  Identities=20%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...|||++||||||++++. |.|+++...||.| +.|+|.|.|+|+.|+.|.|+|||+|||.||+.||..|.....
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   86 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   86 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence            5679999999999999997 8999887789999 999999999999999999999999999999999999975544

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.71  E-value=1.8e-17  Score=131.06  Aligned_cols=68  Identities=28%  Similarity=0.345  Sum_probs=63.2

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ..|||+.||||||+  +.+|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||+||+.||..|..
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSG-PTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEE-SSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Eeec-CCHHHHHHHHHHHHHHHHhc
Confidence            46999999999996  6789999987 89999999999999999887 9999 99999999999999999875

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=3.6e-17  Score=138.13  Aligned_cols=74  Identities=32%  Similarity=0.420  Sum_probs=65.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G-~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...|||+.||||||++++.+|.|+++.+ ||.| +.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.....
T Consensus        15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~   90 (103)
T 2l2n_A           15 NCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSE   90 (103)
T ss_dssp             ----CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence            4679999999999999999999999975 9999 9999999999999999999 99999999999999999986554

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.70  E-value=4.3e-17  Score=134.26  Aligned_cols=72  Identities=31%  Similarity=0.432  Sum_probs=59.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      ...|||+.||||||+++. .|.|+++...||.| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|....
T Consensus        12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence            468999999999999985 79999987789999 999999999997 6889999999999999999999997543

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.69  E-value=4.9e-17  Score=128.63  Aligned_cols=68  Identities=25%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ..|||+.||||||+  +..|.|+++...||+| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|..
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence            36899999999996  7889999987789999 99999999999887 899999999999999999999874

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.69  E-value=8.5e-17  Score=134.71  Aligned_cols=73  Identities=32%  Similarity=0.320  Sum_probs=67.5

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ....+|||+.||||||++++.+|.|+++. +||+  +.|+|.|+|+|..|+.|.| +|||+|||.||+.||..|...
T Consensus        12 ~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~   85 (98)
T 1x47_A           12 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTA-SSKKLAKNKAARATLEILIPD   85 (98)
T ss_dssp             CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHHhh
Confidence            34678999999999999999999999987 7887  9999999999999999999 999999999999999999643

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.69  E-value=1.2e-16  Score=133.86  Aligned_cols=74  Identities=28%  Similarity=0.336  Sum_probs=68.7

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...|||+.||||||++++..|.|.++...||. +.|+|.|.|+|..|+.|.|+|||+|||.||+.||..|.....
T Consensus        14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~-~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   87 (98)
T 1x47_A           14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFV   87 (98)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS-CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSS
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC-CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhh
Confidence            56799999999999999999999998878888 999999999999999999999999999999999999975443

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.68  E-value=1e-16  Score=131.66  Aligned_cols=71  Identities=28%  Similarity=0.415  Sum_probs=65.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-c-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-V-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~-~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..|||++||||||++++.+ .|+ . ..||.| + +|+|.|.|+|..|+.|.|+|||+|||.||+.||..|....+
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~-~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   77 (88)
T 1x48_A            5 SSGYIGLVNSFAQKKKLSV-NYE-Q-CEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP   77 (88)
T ss_dssp             SSCHHHHHHHHHHHTTCCE-EEE-E-CCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHcCCCC-eeE-E-eeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4699999999999999976 999 4 579999 7 69999999999999999999999999999999999987655

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.68  E-value=6e-17  Score=138.99  Aligned_cols=73  Identities=30%  Similarity=0.353  Sum_probs=67.2

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEE-----CCEEeecccCCcChHHHHHHHHHHHHHHHHhcCC
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIV-----DDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGK   87 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V-----~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~   87 (418)
                      ..|||+.||||||++++ +|.|++...||+|.+.|+|.|+|     +|..++.|.| +|||+|||.||+.||..|.....
T Consensus        25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G-~SKK~AEq~AA~~AL~~L~~~~~  102 (113)
T 1uil_A           25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHG-SNKKLAAQSCALSLVRQLYHLGV  102 (113)
T ss_dssp             HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCC-SSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEee-CCHHHHHHHHHHHHHHHHHhcCC
Confidence            46999999999999999 99999655999999999999999     6888899999 99999999999999999987654

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.68  E-value=9.9e-17  Score=133.99  Aligned_cols=72  Identities=26%  Similarity=0.347  Sum_probs=66.0

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ...+|||+.||||||++  .+|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||.||+.||..|....
T Consensus        13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~aL~~L~~~~   85 (97)
T 2dmy_A           13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASG-PSKKTAKLHVAVKVLQAMGYPT   85 (97)
T ss_dssp             CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEee-CCHHHHHHHHHHHHHHHhCCCC
Confidence            45689999999999996  689999987 89999999999999999998 9999 9999999999999999996533

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.68  E-value=1.5e-17  Score=139.03  Aligned_cols=71  Identities=25%  Similarity=0.068  Sum_probs=65.1

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCE-EeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDV-RYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~-~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ...||||.||||||+++ .+|.|+++.+||+|++.|++.|+|+|. .++.|.| +|||+|||.||+.||..|.-
T Consensus         4 ~~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G-~SKK~AEQ~AA~~AL~~l~~   75 (94)
T 1t4n_A            4 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVG-RNIKIAGIRAAENALRDKKM   75 (94)
T ss_dssp             SCHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEE-SSHHHHHHHHHHHHHHCHHH
T ss_pred             CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEe-CCHHHHHHHHHHHHHHHHHH
Confidence            45799999999999974 689999988899999999999999998 8999999 99999999999999986653

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.68  E-value=4.3e-17  Score=136.90  Aligned_cols=72  Identities=22%  Similarity=0.267  Sum_probs=66.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECC-EEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGD-IRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G-~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..|||++||||||++ +..|.|++ ...||.| +.|+|.|.|+| ..++.|.|+|||+|||.||+.||+.|.....
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   78 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE   78 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence            469999999999999 88999999 6689999 99999999999 6899999999999999999999999986553

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.65  E-value=2.3e-16  Score=131.74  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           97 HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        97 ~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ....|||+.||||||++  ..|.|+++.+.||.| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|..
T Consensus        13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence            35689999999999996  789999987789999 99999999999998 899999999999999999999964

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.65  E-value=9.8e-17  Score=138.83  Aligned_cols=72  Identities=26%  Similarity=0.086  Sum_probs=65.4

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCE-EeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDV-RYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~-~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ...|||+.||||||+.+ .+|.|+++.+||+|.+.|++.|+|+|. .++.|.| +|||+|||.||+.||..|...
T Consensus         6 ~~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G-~SKK~AEQ~AA~~AL~~l~~l   78 (117)
T 1t4o_A            6 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVG-RNIKIAGIRAAENALRDKKML   78 (117)
T ss_dssp             CCTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEE-SSHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEe-CCHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999954 789999988899999999999999998 8999999 999999999999999876543

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.65  E-value=3e-16  Score=130.23  Aligned_cols=71  Identities=25%  Similarity=0.259  Sum_probs=65.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..++|+.||||||+++  .|.|+++.+.||+| ++|+|.|.|+|..+ .|.|+|||+|||.||+.||..|.....
T Consensus        13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~   84 (91)
T 2l33_A           13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP   84 (91)
T ss_dssp             CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred             ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3589999999999998  88999988789999 99999999999887 899999999999999999999986655

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.64  E-value=4.5e-16  Score=136.50  Aligned_cols=73  Identities=32%  Similarity=0.353  Sum_probs=67.5

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ...+|||+.||||||++++.+|.|+++.+  +|.+.|++.|+|+|..|+.|.|++|||+|||+||+.||..|...
T Consensus        23 ~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~   95 (128)
T 1whn_A           23 PPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             ccCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence            35689999999999999999999999987  89999999999999999999996699999999999999999643

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.63  E-value=3.9e-16  Score=133.92  Aligned_cols=70  Identities=19%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809          100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus       100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I-----~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      .|||++||||||++++ .|.|++ ...||.| +.|+|.|.|     +|..++.|.|+|||+|||.||+.||..|....
T Consensus        26 ~d~Kt~LqE~~Qk~~~-~p~Y~~-~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~  101 (113)
T 1uil_A           26 ENAKARLNQYFQKEKI-QGEYKY-TQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHHHSCC-CCCCEE-EEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHCCC-CCeEEE-eeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcC
Confidence            5899999999999999 999995 5579999 999999999     68889999999999999999999999998653

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.63  E-value=2e-15  Score=132.34  Aligned_cols=70  Identities=23%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G-~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||++||||||++++.+|.|.++..   .| +.|+|.|.|+|..|+.|.| +|||+|||.||+.||+.|...
T Consensus        24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~   95 (128)
T 1whn_A           24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence            4579999999999999999999999864   66 9999999999999999999 999999999999999999643

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.63  E-value=3.1e-16  Score=130.15  Aligned_cols=69  Identities=32%  Similarity=0.280  Sum_probs=63.7

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      .++|+.||||||+++  .|.|+++. +||+|.+.|+|.|+|+|..+ .|.| +|||+|||.||+.||..|....
T Consensus        14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G-~SKK~AEq~AA~~AL~~L~~~~   83 (91)
T 2l33_A           14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAG-SNKKVAKAYAALAALEKLFPDT   83 (91)
T ss_dssp             SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHCCCC
T ss_pred             cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Eeee-CCHHHHHHHHHHHHHHHHhhcC
Confidence            489999999999998  88999987 89999999999999999887 9999 9999999999999999997543

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.62  E-value=1.9e-16  Score=132.35  Aligned_cols=70  Identities=20%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ..|||+.||||||+. ...|.|.++.. ||+| +.|++.|.|+|. .++.|.|+|||+|||.||+.||..|.-.
T Consensus         5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l   76 (94)
T 1t4n_A            5 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML   76 (94)
T ss_dssp             CHHHHHHHHHHTCSS-SSCCEEEECCC-CSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            459999999999997 46899999865 8999 999999999998 8999999999999999999999887643

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.60  E-value=4.7e-16  Score=134.56  Aligned_cols=72  Identities=19%  Similarity=0.042  Sum_probs=65.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..|||+.||||||+. ...|.|.++.. ||+| +.|++.|.|+|. .++.|.|+|||+|||.||+.||..|.-...
T Consensus         7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~K   80 (117)
T 1t4o_A            7 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF   80 (117)
T ss_dssp             CTTHHHHHHHHHCCG-GGCCEEEEEEC-CCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999994 47899999875 9999 999999999998 899999999999999999999998876665

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.60  E-value=9.5e-16  Score=132.09  Aligned_cols=69  Identities=28%  Similarity=0.344  Sum_probs=63.4

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ...+|||+.||||||+     |.|+++. +||+|.+.|++.|+|+|..| .|.| +|||+|||+||+.||+.|....
T Consensus        34 ~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G-~SKK~AEq~AA~~AL~~L~~~~  103 (114)
T 2ljh_A           34 PQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQG-RSKKVARIEAAATALRSFIQFK  103 (114)
T ss_dssp             CCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHCCCT
T ss_pred             CCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Eeee-CCHHHHHHHHHHHHHHHHHcCC
Confidence            3568999999999984     8999987 89999999999999999999 9999 9999999999999999997644

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.59  E-value=2.6e-15  Score=117.93  Aligned_cols=67  Identities=30%  Similarity=0.325  Sum_probs=61.2

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ..+||++.|||||     ..|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||.||+.||..|...
T Consensus         2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G-~SKK~Aeq~AA~~al~~L~~~   69 (71)
T 2b7v_A            2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSG-RNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEE-SSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEee-CCHHHHHHHHHHHHHHHHHhc
Confidence            4689999999994     689999987 89999999999999999876 8999 999999999999999998753

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.58  E-value=1.8e-15  Score=130.33  Aligned_cols=69  Identities=25%  Similarity=0.319  Sum_probs=63.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...|||++||||||+     |.|+++.+.||.| +.|+|.|.|+|..| .|.|+|||+|||.||+.||+.|.....
T Consensus        35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~  104 (114)
T 2ljh_A           35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD  104 (114)
T ss_dssp             CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence            467999999999994     8999987789999 99999999999999 899999999999999999999986554

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.56  E-value=7.7e-15  Score=115.27  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ..||+++|||||     ..|.|+++...||+| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|...
T Consensus         3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   69 (71)
T 2b7v_A            3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            579999999994     689999988889999 99999999999876 8999999999999999999998753

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.55  E-value=4e-15  Score=135.68  Aligned_cols=72  Identities=25%  Similarity=0.314  Sum_probs=66.9

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      ..|||++||||||++++. |.|++....||.| +.|+|.|.|+|..|+.|.|+|||+|||.||+.||..|....
T Consensus        12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~   84 (179)
T 1qu6_A           12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEK   84 (179)
T ss_dssp             SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhccc
Confidence            479999999999999997 8999987789999 99999999999889999999999999999999999998543

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.50  E-value=4.4e-14  Score=112.63  Aligned_cols=68  Identities=25%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809          102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus       102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      .|+.|++|+|.+  ..|.|++....||+| +.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|....+
T Consensus         6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~~   74 (75)
T 3p1x_A            6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP   74 (75)
T ss_dssp             CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence            344555666654  588999988889999 99999999999988 899999999999999999999976543

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.50  E-value=2.6e-14  Score=133.71  Aligned_cols=70  Identities=33%  Similarity=0.339  Sum_probs=66.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ..|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| .|||+||+.||+.||..|..
T Consensus       149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G-~skK~Ae~~AA~~AL~~L~~  219 (221)
T 2nug_A          149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEG-KSKKEAEQRAAEELIKLLEE  219 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEec-CCHHHHHHHHHHHHHHHhhc
Confidence            57999999999999999999999987 899999999999999999 999999 99999999999999998853

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.49  E-value=3.7e-14  Score=113.05  Aligned_cols=68  Identities=31%  Similarity=0.244  Sum_probs=57.1

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ..+||++.|+|+   +  ..|.|+++. +||+|++.|++.|.|+|..+ .|.| +|||+|||.||+.||..|....
T Consensus         5 ~~K~pl~~L~q~---~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~al~~L~~~~   73 (75)
T 3p1x_A            5 HGKNPVMELNEK---R--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAG-SNKKVAKAYAALAALEKLFPDT   73 (75)
T ss_dssp             -CCCHHHHHHHH---S--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEE-CCHHHHHHHHHHHHHHHHHccC
Confidence            345565555555   3  488999987 89999999999999999988 9999 9999999999999999987543

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.49  E-value=5.5e-14  Score=134.31  Aligned_cols=72  Identities=28%  Similarity=0.319  Sum_probs=67.5

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ...|||+.||||||++++..|.|+++. +||+|.+.|+|.|+|+|..++.|.| .|||+|||.||+.||..|..
T Consensus       177 ~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~  249 (252)
T 1o0w_A          177 MLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKG-RTKKEAEKEAARIAYEKLLK  249 (252)
T ss_dssp             CCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHHC-
T ss_pred             cccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEee-CCHHHHHHHHHHHHHHHHhh
Confidence            457999999999999999999999987 8999999999999999999999999 89999999999999999864

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.48  E-value=5.1e-14  Score=131.71  Aligned_cols=69  Identities=29%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ  168 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~  168 (418)
                      ..|||+.||||||++++..|.|.+....||+| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|.
T Consensus       149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~  218 (221)
T 2nug_A          149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE  218 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence            46999999999999999999999987789999 999999999999 9999999999999999999999986

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=131.59  Aligned_cols=72  Identities=29%  Similarity=0.360  Sum_probs=67.7

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|||+.||||||++++..|.|.+....||+ +.|+|.|.|+|..|+.|.|+|||+|||.||+.||..|...
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~-~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   91 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   91 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT-SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC-CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence            46799999999999999999999998778988 9999999999999999999999999999999999999764

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.47  E-value=7.6e-14  Score=133.37  Aligned_cols=72  Identities=29%  Similarity=0.246  Sum_probs=66.8

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ..|||+.||||||++++..|.|.+....||.| +.|+|.|.|+|..++.|.|.|||+|||.||+.||..|...
T Consensus       178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~  250 (252)
T 1o0w_A          178 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE  250 (252)
T ss_dssp             CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence            46999999999999999999999987789999 9999999999999999999999999999999999999654

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.40  E-value=2.1e-14  Score=137.40  Aligned_cols=72  Identities=32%  Similarity=0.383  Sum_probs=0.0

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ..+|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|..++.|.| .|||+||+.||+.||+.|..
T Consensus       175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIA-GSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHHc
Confidence            468999999999999999999999986 8999999999999999999999999 99999999999999998864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.38  E-value=3.5e-14  Score=134.51  Aligned_cols=73  Identities=36%  Similarity=0.475  Sum_probs=0.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ..|||+.||||||++++..|.|+++.+||+|.+.|+|.|+|+|..++.|.| .|||+||+.||+.||..|....
T Consensus       161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G-~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVG-RSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHhhcc
Confidence            579999999999999999999999889999999999999999998999999 8999999999999999997654

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.36  E-value=6.3e-14  Score=134.11  Aligned_cols=72  Identities=25%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ...|||+.||||||++++..|.|.+....||.| +.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|+.
T Consensus       175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence            457999999999999999999999987789999 999999999999999999999999999999999998864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.31  E-value=1.7e-13  Score=129.72  Aligned_cols=73  Identities=29%  Similarity=0.310  Sum_probs=0.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..|||+.||||||++++..|.|.+.. .||.| +.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|.....
T Consensus       161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~~  234 (242)
T 2a11_A          161 GLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDN  234 (242)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             cCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhccc
Confidence            56999999999999999999999987 79999 999999999999999999999999999999999999976553

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.27  E-value=6.5e-12  Score=119.45  Aligned_cols=67  Identities=30%  Similarity=0.316  Sum_probs=61.1

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ...|||++||||     +..|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||.||+.||..|...
T Consensus       159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G-~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSG-RNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-Eeee-CCHHHHHHHHHHHHHHHHccc
Confidence            357999999999     4689999887 89999999999999999976 9999 999999999999999999653

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.98  E-value=4.9e-11  Score=119.40  Aligned_cols=69  Identities=26%  Similarity=0.229  Sum_probs=0.0

Q ss_pred             CCCChHHHHHHHHHHcCCCC-CeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           12 NCYVFKSRLQEYAQKAGIPT-PVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~l-P~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ...|||+.||||||++++.. |.|+++. .||     |++.|+|+|..++.|.| .|||+|||.||+.||+.|....
T Consensus       252 ~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G-~SKK~AEq~AA~~AL~~L~~~~  322 (341)
T 3rv0_A          252 LNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEG-NSIREAEHRAAMKVLENDELLR  322 (341)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             cccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEe-CCHHHHHHHHHHHHHHHhhhhh
Confidence            45799999999999998765 6999987 665     99999999999999999 8999999999999999887643

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.97  E-value=6.1e-11  Score=118.72  Aligned_cols=71  Identities=25%  Similarity=0.184  Sum_probs=0.0

Q ss_pred             CCCChhHHHHHHHHHcCCCC-CeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAI-PLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~i-P~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...|||+.||||||++++.. |.|.+....||    |++.|.|+|..++.|.|.|||+|||.||+.||+.|.....
T Consensus       252 ~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~k  323 (341)
T 3rv0_A          252 LNKNAKNELAELLQINKLGHKLHYRKLTEMPP----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLRK  323 (341)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             cccCHHHHHHHHHHHcCCCCCceEEEEeccCC----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhh
Confidence            35799999999999999876 58998765564    9999999999999999999999999999999999986544

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.58  E-value=4e-08  Score=93.82  Aligned_cols=66  Identities=23%  Similarity=0.101  Sum_probs=49.9

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        15 npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      +||+.||||+|.... .+.|..  .++.|.+.|+|.|+|+|..++.|.| +|||+|||.||+.||+.|..
T Consensus       198 ~~k~~l~el~~~~~~-~~~~~~--~~~~~~~~f~v~v~v~~~~~~~G~G-~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          198 VPRSPVRELLEMEPE-TAKFSP--AERTYDGKVRVTVEVVGKGKFKGVG-RSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             SCCCHHHHHHHHCTT-TEEECC--CEECTTSCEEEEEEETTTEEEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhccC-Cceeee--ccccCCCcEEEEEEEecceEEEEee-CCHHHHHHHHHHHHHHHHhh
Confidence            344455555554432 223332  3457899999999999998999999 89999999999999999865

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.58  E-value=4.3e-08  Score=93.59  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809          101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus       101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ++|+.||||+|.... .+.|..   .++.| +.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|..
T Consensus       198 ~~k~~l~el~~~~~~-~~~~~~---~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          198 VPRSPVRELLEMEPE-TAKFSP---AERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             SCCCHHHHHHHHCTT-TEEECC---CEECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhccC-Cceeee---ccccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            344455555554432 233332   23456 999999999999999999999999999999999999964

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=95.72  E-value=0.022  Score=47.64  Aligned_cols=70  Identities=11%  Similarity=0.173  Sum_probs=50.7

Q ss_pred             CChhHHHHHHHHHcCC-----CCCeEEEeeccCCCCceEEEEEEECC-----EEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809          100 GLCKNLLQEYAQKMNY-----AIPLYQCRKDEASGKVQFSCTVEIGD-----IRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus       100 ~n~Ks~LQE~cQK~~l-----~iP~Y~~~e~~GP~h~~Ft~tV~I~G-----~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      .+.+++|+.||++.-.     ..|.|.+..... ....| |+|.+-.     ..++ -.-.||+.||+.||-+|+..|..
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g-~~~~sk~~AK~sAAf~Ac~~L~~   80 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIES-SLLPSTEAAKKDACLKAVHELHN   80 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeC-CccccHHHHHHHHHHHHHHHHHH
Confidence            4578999999998743     468999764322 12467 9988732     1222 24499999999999999999987


Q ss_pred             ccc
Q 014809          170 SAS  172 (418)
Q Consensus       170 ~~~  172 (418)
                      ..-
T Consensus        81 ~G~   83 (102)
T 2kou_A           81 LGV   83 (102)
T ss_dssp             HCS
T ss_pred             CCC
Confidence            764

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=94.85  E-value=0.068  Score=44.66  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCChHHHHHHHHHHcCC-----CCCeEEEeecCCCCCCcEEEEEEECCEE-e--ecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           13 CYVFKSRLQEYAQKAGI-----PTPVYETIKEGPSHEPWFRSTVIVDDVR-Y--DSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~-----~lP~Yev~~eGP~H~~~Ftv~V~V~G~~-~--gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ..+.++.|+.||++.--     ..|.|.+..... ....| |+|.+-... +  ..|.-..||+.||+.||-+|...|.+
T Consensus         3 ~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~   80 (102)
T 2kou_A            3 GGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHN   80 (102)
T ss_dssp             CSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHH
Confidence            34678999999999742     368999765111 12367 888875311 1  12322379999999999999999999


Q ss_pred             cCCCCc
Q 014809           85 LGKVNE   90 (418)
Q Consensus        85 ~~~~~s   90 (418)
                      .+..++
T Consensus        81 ~G~Ldd   86 (102)
T 2kou_A           81 LGVLND   86 (102)
T ss_dssp             HCSCTT
T ss_pred             CCCCcc
Confidence            887643

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.16  E-value=1.4  Score=37.92  Aligned_cols=71  Identities=23%  Similarity=0.125  Sum_probs=47.9

Q ss_pred             CCCChhHHHHHHHHHcCC-----CCCeEEEeeccCCCCceEEEEEEEC--CEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNY-----AIPLYQCRKDEASGKVQFSCTVEIG--DIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l-----~iP~Y~~~e~~GP~h~~Ft~tV~I~--G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      +...+|++|....|+---     +.-.|.+.  .|+.-+  .|++.+.  -..-..|.|+.|-+||..||-.|++.|+..
T Consensus        15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t--~g~k~K--~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~L   90 (119)
T 2db2_A           15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHT--NGPKKK--KVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGW   90 (119)
T ss_dssp             TCSCHHHHHHHHHHHHTTHHHHHHHEEEEEC--CSSSSE--EEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCChHHHHHHHHHHHHccCchhhheeEEee--cCCcee--EEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHc
Confidence            456899999998876532     22234443  233334  5555552  222245999999999999999999999987


Q ss_pred             cc
Q 014809          171 AS  172 (418)
Q Consensus       171 ~~  172 (418)
                      .-
T Consensus        91 gl   92 (119)
T 2db2_A           91 GL   92 (119)
T ss_dssp             TS
T ss_pred             Cc
Confidence            64

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=85.68  E-value=0.52  Score=52.78  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=48.3

Q ss_pred             CChhHHHHHHHHHcCCCCCeEEEeec-----cC------CCC-c-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHH
Q 014809          100 GLCKNLLQEYAQKMNYAIPLYQCRKD-----EA------SGK-V-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLA  166 (418)
Q Consensus       100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~-----~G------P~h-~-~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~  166 (418)
                      ..||..+++   |.+ ..+-|.+++.     .|      |.. | .|.|.+.+-+..+-.+..+-||+|||.||+.||++
T Consensus        17 ~~pk~~~~q---~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~   92 (950)
T 3htx_A           17 PTPKAIIHQ---KFG-AKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDK   92 (950)
T ss_dssp             CCCHHHHHH---TTG-GGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHH---HhC-cceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHH
Confidence            356776654   222 2367877441     11      122 3 89999999766666799999999999999999999


Q ss_pred             HHhcc
Q 014809          167 IQSSA  171 (418)
Q Consensus       167 L~~~~  171 (418)
                      |..+.
T Consensus        93 ~g~~~   97 (950)
T 3htx_A           93 LGIRP   97 (950)
T ss_dssp             TTSTT
T ss_pred             hCCCc
Confidence            98755

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=83.11  E-value=0.96  Score=50.71  Aligned_cols=69  Identities=26%  Similarity=0.247  Sum_probs=48.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee--cC-----C-----CCC-CcEEEEEEECCEEeecccCCcChHHHHHHHHHHH
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK--EG-----P-----SHE-PWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVA   78 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~--eG-----P-----~H~-~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~A   78 (418)
                      +-..||-.++   ||.|- -+.|++.+  ++     |     ..- -.|.|.+.+-+..+-++.= +-||+|||.||+.|
T Consensus        15 ~~~~pk~~~~---q~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~-~~kkd~eq~aa~~a   89 (950)
T 3htx_A           15 HTPTPKAIIH---QKFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVF-KKKKDSEQSAAELA   89 (950)
T ss_dssp             CCCCCHHHHH---HTTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCB-SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHH---HHhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchh-hccccHHHHHHHHH
Confidence            4457888765   34443 36898865  21     1     112 3899999998776656544 99999999999999


Q ss_pred             HHHHHhc
Q 014809           79 LVELAKL   85 (418)
Q Consensus        79 L~~L~~~   85 (418)
                      |++|...
T Consensus        90 l~~~g~~   96 (950)
T 3htx_A           90 LDKLGIR   96 (950)
T ss_dssp             HTTTTST
T ss_pred             HHHhCCC
Confidence            9988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	418
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	2e-15
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	3e-12
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	5e-14
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	3e-06
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	2e-13
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	2e-07
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	3e-13
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	9e-11
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	4e-13
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	3e-12
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	7e-13
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	1e-07
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	7e-13
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	3e-06
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	4e-12
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	5e-05
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	4e-12
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	4e-09
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	2e-11
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	4e-06
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	5e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	8e-11
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	8e-11
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	3e-07
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	2e-10
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	4e-10
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	5e-08
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	9e-10
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	8e-04
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	2e-09
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	0.001
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	7e-09
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	6e-06
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	3e-08
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	6e-06
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	3e-07
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	1e-06

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.4 bits (167), Expect = 2e-15
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
          +K+ LQE  Q      P Y  ++      +  F   V V+     +  G   +K AE+ A
Sbjct: 2  YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKG-RTKKEAEKEA 60

Query: 75 AEVALVEL 82
          A +A  +L
Sbjct: 61 ARIAYEKL 68

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           K  LQE  Q  +   P Y   + E   G   F   V +       G  +TKKEAE +AAR
Sbjct: 3   KTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAAR 62

Query: 162 TALLAI 167
            A   +
Sbjct: 63  IAYEKL 68

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.6 bits (159), Expect = 5e-14
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 9  GVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
          G S     K+ L  +  K  +  P YE    G  +   F   V V+   Y  +    N+K
Sbjct: 1  GSSGSSGIKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKK 59

Query: 69 AAEQSAAEVALVELAKLGKVNE 90
           A+ +AA   +  L ++ +V  
Sbjct: 60 DAQSNAARDFVNYLVRINEVKS 81

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIG-GAAKTKKEAEIKAAR 161
           KN L  +  K     P Y+ R      + +F C V +    Y G G +  KK+A+  AAR
Sbjct: 9   KNFLYAWCGK-RKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 162 TALLAIQ 168
             +  + 
Sbjct: 68  DFVNYLV 74

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 15 VFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
           +  +L +Y Q  G+    Y+ +   GP H+  F   V++D+  +       +++ A  +
Sbjct: 8  FYMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNA 65

Query: 74 AAEVALVELAKLGKVN 89
          AA++A+  L    KV+
Sbjct: 66 AAKLAVDILDNENKVD 81

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 30/81 (37%)

Query: 98  ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEI 157
             G   + L +Y Q    AI   +          +F+  V I +  +     ++K+EA  
Sbjct: 5   TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARN 64

Query: 158 KAARTALLAIQSSASELSGNS 178
            AA+ A+  + +        S
Sbjct: 65  AAAKLAVDILDNENKVDCHTS 85

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
          +K+ LQE  QK     P Y  I   GP H+  F     + + R        ++K AEQ A
Sbjct: 2  YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGK--SKKEAEQRA 59

Query: 75 AEVALVEL 82
          AE  +  L
Sbjct: 60 AEELIKLL 67

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 55.4 bits (133), Expect = 9e-11
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 103 KNLLQEYAQKMNYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           K +LQE  QK     P Y+    +    K +F    +I + R + G  K+KKEAE +AA 
Sbjct: 3   KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAE 61

Query: 162 TALLAIQ 168
             +  ++
Sbjct: 62  ELIKLLE 68

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (150), Expect = 4e-13
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
          +   +  +AQK  +    YE  +        F     +    Y +      ++ A+Q AA
Sbjct: 1  YIGLVNSFAQKKKLSVN-YEQCEPNSELPQRFICKCKIGQTMYGT-GSGVTKQEAKQLAA 58

Query: 76 EVALVELAK 84
          + A  +L K
Sbjct: 59 KEAYQKLLK 67

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (144), Expect = 3e-12
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
             L+  +AQK   ++   QC  +    + +F C  +IG   Y  G+  TK+EA+  AA+ 
Sbjct: 2   IGLVNSFAQKKKLSVNYEQCEPNSELPQ-RFICKCKIGQTMYGTGSGVTKQEAKQLAAKE 60

Query: 163 ALLAIQSSASELSGNS 178
           A   +  S  + +G S
Sbjct: 61  AYQKLLKSPPKTAGTS 76

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 7e-13
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 15 VFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
           F   L  Y QK G+    Y+ +   GP H+  F   VI+D   +    G  ++K A+ +
Sbjct: 14 FFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEG-RSKKEAKNA 71

Query: 74 AAEVALVELAK 84
          AA++A+  L K
Sbjct: 72 AAKLAVEILNK 82

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 16/73 (21%), Positives = 28/73 (38%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
              L  Y QK    +   +          +F+  V I    +  G  ++KKEA+  AA+ 
Sbjct: 16  MEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKL 75

Query: 163 ALLAIQSSASELS 175
           A+  +      +S
Sbjct: 76  AVEILNKEKKAVS 88

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (152), Expect = 7e-13
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 16  FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLP----GFFNRKAAE 71
            K+RL +Y QK  I    Y+  + GP H   F + + +   +            N+K A 
Sbjct: 28  AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 72  QSAAEVALVELAKLGKVNECISQP 95
           QS A   + +L  LG +    S P
Sbjct: 87  QSCALSLVRQLYHLGVIEAYSSGP 110

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEI-----GDIRYIGGAAKTKKEAEI 157
           K  L +Y QK       Y+  +        F   + I     G   +       KK A  
Sbjct: 29  KARLNQYFQK-EKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 158 KAARTAL 164
             A + +
Sbjct: 88  SCALSLV 94

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           S++ E   K  +    ++ ++E GP+H   F +  IV  +  +       +K +++ AA
Sbjct: 10 ISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTE--GEGNGKKVSKKRAA 66

Query: 76 EVALVELAKL 85
          E  LVEL KL
Sbjct: 67 EKMLVELQKL 76

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
            + + E   K N  +     R++  +    F     +G I    G    KK ++ +AA  
Sbjct: 10  ISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTE-GEGNGKKVSKKRAAEK 68

Query: 163 ALLAIQS 169
            L+ +Q 
Sbjct: 69  MLVELQK 75

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 59.0 bits (142), Expect = 4e-12
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             LQE A + G   P Y   +E GP H+  F  T  V+           +++ A++ AA
Sbjct: 3  VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGT--SKQVAKRVAA 60

Query: 76 EVALVEL 82
          E  L + 
Sbjct: 61 EKLLTKF 67

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
              LQE A +  + +P Y   ++      +        +     G+  +K+ A+  AA  
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEK 62

Query: 163 ALLAIQS 169
            L   ++
Sbjct: 63  LLTKFKT 69

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             L E           Y+ + E G SH   F  +V+VD   ++      N+K A+  AA
Sbjct: 7  VMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFFEGS--GRNKKLAKARAA 59

Query: 76 EVALVELAKL 85
          + AL  +  L
Sbjct: 60 QSALATVFNL 69

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
             +L E    + Y        +   S    F  +V +    + G + + KK A+ +AA++
Sbjct: 7   VMILNELRPGLKYDFL----SESGESHAKSFVMSVVVDGQFFEG-SGRNKKLAKARAAQS 61

Query: 163 ALLAI 167
           AL  +
Sbjct: 62  ALATV 66

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 5e-11
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
             +L EY Q++    P+Y   + E   +  F  +V I  + Y  G A +KK A+ KAAR 
Sbjct: 12  VCILHEYMQRVLKVRPVYNFFECENPSE-PFGASVTIDGVTYGSGTASSKKLAKNKAARA 70

Query: 163 ALLAIQSSASE 173
            L  +     +
Sbjct: 71  TLEILIPDFVK 81

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 8e-11
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
              L EY Q+     PVY   + E PS    F ++V +D V Y S     ++K A+  A
Sbjct: 11 EVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGT-ASSKKLAKNKA 67

Query: 75 AEVALVEL 82
          A   L  L
Sbjct: 68 ARATLEIL 75

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 8e-11
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
              LQE   + G   P Y   +E GP+H   F  T  V+           ++K A+++A
Sbjct: 11 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI--GSGTSKKLAKRNA 68

Query: 75 AEVALVEL 82
          A   L+ +
Sbjct: 69 AAKMLLRV 76

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 13/65 (20%), Positives = 24/65 (36%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
              LQE   +  + +P Y   ++      +        +     G+  +KK A+  AA  
Sbjct: 12  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAK 71

Query: 163 ALLAI 167
            LL +
Sbjct: 72  MLLRV 76

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
           K +L      A +    Y T+K+  + +P       V D          N K A   AA
Sbjct: 8  AKRQLYSLIGYASL-RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 76 EVALVELAKLGK 87
          E AL +   L  
Sbjct: 67 ENALRDKKMLDF 78

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 17  KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
           K  L E+ ++  +P PVYET++            V V + +Y S     ++K AEQ+AA 
Sbjct: 29  KMCLLEWCRREKLPQPVYETVQRTIDRMFCS--VVTVAEQKYQSTLWDKSKKLAEQTAAI 86

Query: 77  VALVELA-KLGKVNE 90
           V L       G++ E
Sbjct: 87  VCLRSQGLPEGRLGE 101

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY-IGGAAKTKKEAEIKAAR 161
           K  L E+ ++     P+Y+  +        F   V + + +Y      K+KK AE  AA 
Sbjct: 29  KMCLLEWCRREKLPQPVYETVQRTIDRM--FCSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86

Query: 162 TALLAIQSSASEL-SGNSAGNTQLTVLPSRKRGP 194
             L +       L   + + N +    P +  G 
Sbjct: 87  VCLRSQGLPEGRLGEESPSLNKRKREAPDQDPGG 120

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
            RL +       P   Y+ + + GP H P F  +V VD   Y++     ++K A+   A
Sbjct: 15 LMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGP--SKKTAKLHVA 67

Query: 76 EVALVEL 82
             L  +
Sbjct: 68 VKVLQAM 74

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 8e-04
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
              L +    + Y +      +        F+ +V++    Y      +KK A++  A  
Sbjct: 15  LMRLNQIRPGLQYKL----LSQSGPVHAPVFTMSVDVDGTTYEASG-PSKKTAKLHVAVK 69

Query: 163 ALLAIQSSAS 172
            L A+     
Sbjct: 70  VLQAMGYPTG 79

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
          K+ L +  +    P   Y  + + GP H P F  +V V+   ++       +K A+  AA
Sbjct: 7  KNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 76 EVALVELAKL 85
          E AL    + 
Sbjct: 63 EKALRSFVQF 72

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDE-ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
           KN L +  +        Y             F  +VE+    + G +  TKK+A++ AA 
Sbjct: 7   KNALMQLNEIKP--GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 63

Query: 162 TAL 164
            AL
Sbjct: 64  KAL 66

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (120), Expect = 7e-09
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
           SRL +  Q      P Y  + E           + V      +     N+K A+++AAE
Sbjct: 9  ISRLAQIQQARKEKEPDYILLSERGMPRRR-EFVMQVKVGNEVATGTGPNKKIAKKNAAE 67

Query: 77 VALVELAKLGKVNECISQP 95
            L++L      +   S P
Sbjct: 68 AMLLQLGYKASTSLQDSGP 86

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASG-KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
            + L +  Q      P Y    +     + +F   V++G+    G     KK A+  AA 
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT-GPNKKIAKKNAAE 67

Query: 162 TALLAIQ---SSASELSGNSAG 180
             LL +    S++ + SG S+G
Sbjct: 68  AMLLQLGYKASTSLQDSGPSSG 89

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
             L EY  K     PVYE  +     H P F   V V D+         ++K A+  AA
Sbjct: 5  IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGE--GTSKKLAKHRAA 61

Query: 76 EVALVEL 82
          E A+  L
Sbjct: 62 EAAINIL 68

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 6e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
             +L EY  K          R D       F+  V +GDI    G   +KK A+ +AA  
Sbjct: 5   IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT-GEGTSKKLAKHRAAEA 63

Query: 163 ALLAIQSSAS 172
           A+  ++++AS
Sbjct: 64  AINILKANAS 73

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
          +   +   AQK    T  YE    G      F     +    Y        ++ A+Q AA
Sbjct: 16 YIGLINRIAQKK-RLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGT-GSTKQEAKQLAA 73

Query: 76 EVALVELAKLGKVNEC 91
          ++A +++      + C
Sbjct: 74 KLAYLQILSEETGSGC 89

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
             L+   AQK    +   QC       +  F    ++G   Y  G   TK+EA+  AA+ 
Sbjct: 17  IGLINRIAQKKRLTVNYEQCASGVHGPE-GFHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 75

Query: 163 ALLAIQSSAS 172
           A L I S  +
Sbjct: 76  AYLQILSEET 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	418
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.79
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.78
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.75
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.75
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.74
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.74
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.74
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.74
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.74
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.73
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.73
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.73
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.72
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.72
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.72
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.72
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.72
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.72
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.71
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.71
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.68
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.67
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.67
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.67
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.66
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.6
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.59
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.57
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.55
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.52
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.52
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.51
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.39
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.39
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.38
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.34

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.2e-19  Score=139.87  Aligned_cols=67  Identities=28%  Similarity=0.326  Sum_probs=64.8

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809           15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus        15 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      |||+.||||||++++.+|.|+++. +||+|.+.|++.|+|+|..++.|.| +|||+|||.||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g-~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKG-RTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEe-CCHHHHHHHHHHHHHHHh
Confidence            799999999999999999999987 8999999999999999999999999 899999999999999987

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.5e-19  Score=138.04  Aligned_cols=67  Identities=31%  Similarity=0.303  Sum_probs=64.6

Q ss_pred             ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809          101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI  167 (418)
Q Consensus       101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L  167 (418)
                      |||+.||||||++++.+|.|.+....||+| +.|++.|.|+|..++.|.|+|||+|||.||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            799999999999999999999988889999 9999999999999999999999999999999999987

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.6e-18  Score=135.49  Aligned_cols=70  Identities=31%  Similarity=0.307  Sum_probs=65.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      .+||++.||||||++++ +|.|+++. +||+|++.|++.|.|++. ++.|.| +|||+||+.||+.||..|...
T Consensus         1 gK~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g-~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           1 GKTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEG-TSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CCCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECS-SCTTHHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEecc-ccHHHHHHHHHHHHHHHHHhc
Confidence            47999999999999987 89999986 899999999999999997 679999 899999999999999999764

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.75  E-value=1.4e-18  Score=134.53  Aligned_cols=67  Identities=28%  Similarity=0.361  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809           15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA   83 (418)
Q Consensus        15 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~   83 (418)
                      .||+.||||||++++++|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+||++||+.||+.|.
T Consensus         1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~g-~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSG-TSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecCc-CcHHHHHHHHHHHHHHHhc
Confidence            489999999999999999999987 79999999999999999875 8999 9999999999999999986

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.74  E-value=1.4e-18  Score=133.96  Aligned_cols=67  Identities=31%  Similarity=0.333  Sum_probs=63.1

Q ss_pred             ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 014809          101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ  168 (418)
Q Consensus       101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~  168 (418)
                      |||+.||||||++++++|.|++....||+| +.|+|.|.|++.. +.|.|+|||+|||.||+.||+.|+
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEEecCCHHHHHHHHHHHHHHHhC
Confidence            799999999999999999999988889999 9999999999964 779999999999999999999884

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-18  Score=134.79  Aligned_cols=73  Identities=26%  Similarity=0.298  Sum_probs=67.0

Q ss_pred             cCCCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809            8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus         8 ~~~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      +......|||+.||||||++++.+|.|+++. .|++|.+.|.|.|.|++.. +.|.| +|||+|||+||+.||+.|
T Consensus         3 ~~~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G-~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           3 SPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSG-TSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred             CCccCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-ecccc-ccHHHHHHHHHHHHHHhC
Confidence            3445678999999999999999999999987 8999999999999999975 79999 899999999999999976

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.74  E-value=2.2e-18  Score=133.35  Aligned_cols=67  Identities=21%  Similarity=0.289  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809          102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus       102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ||+.||||||++++++|.|++....||+| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|+.
T Consensus         2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~g~sKK~Aeq~AA~~aL~~L~s   69 (69)
T d1di2a_           2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKLLTKFKT   69 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecCcCcHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999988889999 99999999999765 799999999999999999999873

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-18  Score=140.14  Aligned_cols=83  Identities=29%  Similarity=0.438  Sum_probs=73.5

Q ss_pred             CCCccCCCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809            4 NEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus         4 ~~~~~~~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      |-+..++....+||+.||||||++++ .|.|.++. +||+|.+.|+|.|.|+|..|++|.| .|||+||+.||+.||+.|
T Consensus         3 ~~~~~~~~~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G-~sKK~Aeq~AA~~aL~~L   80 (90)
T d1qu6a1           3 HMEMAGDLSAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEG-RSKKEAKNAAAKLAVEIL   80 (90)
T ss_dssp             CCSSCCCSSSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEEC-CSSHHHHHHHHHHHHHHH
T ss_pred             hhhhccCCCCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccCC-CcHHHHHHHHHHHHHHHH
Confidence            33445566677999999999999988 78999876 8999999999999999999999999 899999999999999999


Q ss_pred             HhcCCC
Q 014809           83 AKLGKV   88 (418)
Q Consensus        83 ~~~~~~   88 (418)
                      ......
T Consensus        81 ~~~~~~   86 (90)
T d1qu6a1          81 NKEKKA   86 (90)
T ss_dssp             HSCCSC
T ss_pred             HhhCCC
Confidence            887653

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.74  E-value=1.6e-18  Score=133.60  Aligned_cols=66  Identities=36%  Similarity=0.411  Sum_probs=62.7

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809           15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL   82 (418)
Q Consensus        15 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L   82 (418)
                      |||+.||||||++++++|.|+++. .||+|.+.|++.|.|++.. +.|.| +|||+|||.||+.||+.|
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g-~sKK~Aeq~AA~~aL~~L   67 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEG-KSKKEAEQRAAEELIKLL   67 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEEec-CCHHHHHHHHHHHHHHHh
Confidence            799999999999999999999877 8999999999999999975 68999 899999999999999987

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4e-18  Score=133.12  Aligned_cols=70  Identities=30%  Similarity=0.504  Sum_probs=64.7

Q ss_pred             CChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809          100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus       100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      .||++.||||||++++ .|.|.+...+||+| +.|+|.|.|++. +..|.|+|||+|||.||+.||+.|+...
T Consensus         2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~~   72 (73)
T d2dixa1           2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKANA   72 (73)
T ss_dssp             CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999988 79999987789999 999999999987 6789999999999999999999998653

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.6e-18  Score=132.33  Aligned_cols=70  Identities=21%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809           97 HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI  167 (418)
Q Consensus        97 ~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L  167 (418)
                      ....|||+.||||||++++++|.|++....|+.| +.|+|.|.|++.. +.|.|+|||+|||.||+.||+.|
T Consensus         6 ~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           6 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-eccccccHHHHHHHHHHHHHHhC
Confidence            4568999999999999999999999988789999 9999999999865 88999999999999999999986

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=5.9e-18  Score=137.40  Aligned_cols=72  Identities=28%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      +...|||+.||||||+++|.+|.|+++. +|++|.+.|+|.|+|++..+ +|.| .|||+||+.||+.||+.|..
T Consensus         3 ~~~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g-~SKK~Ae~~AA~~aL~~l~~   75 (89)
T d1uhza_           3 SGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTG-PNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             CSSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cccc-hHHHHHHHHHHHHHHHHhCc
Confidence            4567999999999999999999999987 89999999999999999975 8999 89999999999999999854

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3.2e-18  Score=137.68  Aligned_cols=76  Identities=25%  Similarity=0.463  Sum_probs=69.9

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      ++..|||++||||||++++ .|.|.++. +||+|.+.|+|.|+|+|..|+.|.| .|||+||+.||+.||..|......
T Consensus         4 ~~~~~yk~~L~E~~Qk~~~-~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g-~sKK~Aeq~AA~~aL~~L~~~~~~   80 (85)
T d1x49a1           4 DTPGFYMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKG-RSKQEARNAAAKLAVDILDNENKV   80 (85)
T ss_dssp             CCTTHHHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEE-SSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCchhHHHHHHHHHHhcCC-CCeEEEEEecCCCCCceEEEEEecCceEeecccc-ccHHHHHHHHHHHHHHHHHHcCcc
Confidence            4567999999999999999 58999886 8999999999999999999999999 899999999999999999887654

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.7e-18  Score=137.28  Aligned_cols=84  Identities=20%  Similarity=0.233  Sum_probs=74.0

Q ss_pred             CCCCCCccCCCCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHH
Q 014809            1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALV   80 (418)
Q Consensus         1 ~~~~~~~~~~~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~   80 (418)
                      |+|++...+.. ..|||++||||||++++. |.|++...|++|.+.|.|.|+|+|..|+.|.| +|||+||+.||+.||.
T Consensus         2 ~~~~~~~~~~~-~~n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G-~sKK~Akq~AA~~Al~   78 (89)
T d1qu6a2           2 LTTTNSSEGLS-MGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTG-STKQEAKQLAAKLAYL   78 (89)
T ss_dssp             CCCSCSSCCCC-CCCCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEEEE-SSHHHHHHHHHHHHHH
T ss_pred             cCcccCCcCcc-ccCHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCcccccccc-chHHHHHHHHHHHHHH
Confidence            56666655554 459999999999999985 68988889999999999999999999999999 9999999999999999


Q ss_pred             HHHhcCC
Q 014809           81 ELAKLGK   87 (418)
Q Consensus        81 ~L~~~~~   87 (418)
                      .|..+..
T Consensus        79 ~L~~~~~   85 (89)
T d1qu6a2          79 QILSEET   85 (89)
T ss_dssp             HHHHCCC
T ss_pred             HHHccCC
Confidence            9998653

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=6e-18  Score=133.76  Aligned_cols=71  Identities=28%  Similarity=0.393  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccccc
Q 014809          102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL  174 (418)
Q Consensus       102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~~~  174 (418)
                      ||++||||||+++++++ |.+.+ .||+| +.|+|.|.|+|+.|+.|.|+|||+|||.||+.||+.|....+.+
T Consensus         1 Y~s~L~E~~Qk~~~~~~-~~~~~-~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~~~   72 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSVN-YEQCE-PNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKT   72 (76)
T ss_dssp             HHHHHHHHHHHTTCCEE-EEECC-CSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ChHHHHHHHHHhCCCCc-cccCC-cCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCCCC
Confidence            79999999999999874 45553 69999 99999999999999999999999999999999999999987643

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.1e-18  Score=139.25  Aligned_cols=74  Identities=24%  Similarity=0.320  Sum_probs=68.2

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...+||+.||||||++++ .|.|.+....||+| +.|+|.|.|+|..|+.|.|+|||+||+.||+.||+.|....+
T Consensus        11 ~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~   85 (90)
T d1qu6a1          11 SAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK   85 (90)
T ss_dssp             SSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCC
Confidence            356999999999999988 68888877789999 999999999999999999999999999999999999998765

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5.1e-18  Score=136.48  Aligned_cols=75  Identities=20%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           97 HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        97 ~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      +...+||++||||||++++. |.|.+....||+| +.|+|.|.|+|..|+.|.|+|||+|||.||+.||..|.....
T Consensus         4 ~~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~~   79 (85)
T d1x49a1           4 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   79 (85)
T ss_dssp             CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcCc
Confidence            34579999999999999995 8888877789999 999999999999999999999999999999999999988765

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.5e-18  Score=140.91  Aligned_cols=77  Identities=26%  Similarity=0.290  Sum_probs=69.9

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEe-ecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY-DSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~-gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      +....|||+.||||||++++ +|.|++...||+|.++|+|.|.|+|..| +.|.| +|||+|||+||+.||+.|......
T Consensus         2 ~~~~~~~Ks~LqE~~qk~k~-~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g-~sKK~AEq~AA~~al~~L~~~~~~   79 (99)
T d1whqa_           2 SSGSSGIKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNS-TNKKDAQSNAARDFVNYLVRINEV   79 (99)
T ss_dssp             CCCCCSSHHHHHHHHHHTTC-CCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEE-SSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCccHHHHHHHHHHhCCC-CCeEEEecccCCCCceEEEEEEeccccceeccCC-ccHHHHHHHHHHHHHHHHHHcCCC
Confidence            45678999999999999998 6999988899999999999999999775 78999 899999999999999999887653

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.1e-17  Score=132.33  Aligned_cols=71  Identities=21%  Similarity=0.269  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        16 pKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      ||++||||||++++++ .|.+..+||+|.+.|+|.|.|+|..|+.|.| .|||+|||+||+.||..|....+.
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G-~sKK~Aeq~AA~~Al~~L~~~~~~   71 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGSG-VTKQEAKQLAAKEAYQKLLKSPPK   71 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEEEE-SSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCcCc-cHHHHHHHHHHHHHHHHHHccCCC
Confidence            7999999999999866 7877778999999999999999999999999 899999999999999999987653

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.7e-17  Score=134.62  Aligned_cols=72  Identities=22%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      ..|||+.||||||++++++|.|++....|+.| +.|+|.|.|++..+ .|.|+|||+||+.||+.||+.|....
T Consensus         5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g~SKK~Ae~~AA~~aL~~l~~~~   77 (89)
T d1uhza_           5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTGPNKKIAKKNAAEAMLLQLGYKA   77 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTSSH
T ss_pred             CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cccchHHHHHHHHHHHHHHHHhCccC
Confidence            46999999999999999999999988789999 99999999999876 79999999999999999999996544

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5e-17  Score=130.53  Aligned_cols=70  Identities=30%  Similarity=0.315  Sum_probs=63.8

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA   83 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~   83 (418)
                      +..+|||+.||||||++++.+|.|.+.. .|  |...|.+.|.|+|..|+.|.| +|||.|||.||+.||+.|.
T Consensus         6 ~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g--~~~~F~~~v~i~g~~~~~g~G-~sKK~Aeq~AA~~AL~~L~   76 (85)
T d1x47a1           6 PNGKSEVCILHEYMQRVLKVRPVYNFFECEN--PSEPFGASVTIDGVTYGSGTA-SSKKLAKNKAARATLEILI   76 (85)
T ss_dssp             TTCCCHHHHHHHHHHHHTCSCCEEEEEECSS--SSCCEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHhCCCCCCeEEEecCC--CCCCEEEEEEECCEEEecCCc-chHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999987 44  445799999999999999999 8999999999999999884

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.3e-17  Score=131.40  Aligned_cols=71  Identities=28%  Similarity=0.381  Sum_probs=65.0

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ...+||++.||||||+++++ |.|+++. +||+|.+.|+|.|+|++. ++.|.| .|||+|||.||+.||..|..
T Consensus         4 ~~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G-~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEG-NGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECC-CSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeee-Eeeecc-CcHHHHHHHHHHHHHHHHHc
Confidence            35689999999999999996 8999887 899999999999999986 579999 89999999999999999864

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.3e-17  Score=129.90  Aligned_cols=73  Identities=29%  Similarity=0.345  Sum_probs=64.8

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      ...|||++||||||++++.+|.|.+....|+. +.|.|+|.|+|..|+.|.|+|||.|||.||+.||+.|....
T Consensus         7 ~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~-~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~~~~   79 (85)
T d1x47a1           7 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDF   79 (85)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS-CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSS
T ss_pred             CCcCHHHHHHHHHHHhCCCCCCeEEEecCCCC-CCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999998644433 67999999999999999999999999999999999996443

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-17  Score=132.80  Aligned_cols=73  Identities=27%  Similarity=0.295  Sum_probs=66.0

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ...|||++||||||++++. |.|++.+ .|++| +.|+|.|.|+|+.|+.|.|+|||+||+.||+.||..|.....
T Consensus        12 ~~~n~~s~L~E~~Qk~~~~-~~y~~~~-~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~~   85 (89)
T d1qu6a2          12 SMGNYIGLINRIAQKKRLT-VNYEQCA-SGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET   85 (89)
T ss_dssp             CCCCCHHHHHHHHHHSCCE-EEEEEEE-ECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccCHHHHHHHHHHhcCCC-cceeeec-cCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccCC
Confidence            5679999999999999996 4677664 68888 999999999999999999999999999999999999998764

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=6.9e-17  Score=136.75  Aligned_cols=80  Identities=30%  Similarity=0.372  Sum_probs=69.9

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEE-----CCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIV-----DDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV   88 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V-----~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~   88 (418)
                      .|||+.||||||++++. |.|++...||+|.+.|+|+|.|     ++..++.|.| .|||+|||.||+.||+.|...+.+
T Consensus        26 ~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G-~sKK~AEq~AA~~~l~~L~~~g~i  103 (113)
T d1uila_          26 ENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHG-SNKKLAAQSCALSLVRQLYHLGVI  103 (113)
T ss_dssp             HHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCC-SSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             cCHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeeccc-chHHHHHHHHHHHHHHHHHHcCCc
Confidence            58999999999999985 9999877999999999999999     5677789999 899999999999999999988766


Q ss_pred             CccCCCC
Q 014809           89 NECISQP   95 (418)
Q Consensus        89 ~s~~s~P   95 (418)
                      ....+.|
T Consensus       104 ~~~~s~P  110 (113)
T d1uila_         104 EAYSSGP  110 (113)
T ss_dssp             CCCCCSS
T ss_pred             CcCCCCC
Confidence            5443333

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.9e-17  Score=134.57  Aligned_cols=72  Identities=25%  Similarity=0.365  Sum_probs=65.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEe-eecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRY-IGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~-g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      ..|||++||||||++++ .|.|++.+ .||.| ++|.|.|.|+|..| +.|.|+|||+|||.||+.||+.|.....
T Consensus         5 ~~~~Ks~LqE~~qk~k~-~P~Y~~~~-~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~~   78 (99)
T d1whqa_           5 SSGIKNFLYAWCGKRKM-TPAYEIRA-VGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE   78 (99)
T ss_dssp             CCSSHHHHHHHHHHTTC-CCEEEEEE-EECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CccHHHHHHHHHHhCCC-CCeEEEec-ccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcCC
Confidence            57999999999999998 49999875 69999 99999999998775 7899999999999999999999987654

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=2.1e-17  Score=130.11  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=64.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ...||++.||||||+++++ |.|.+++..||.| +.|+|+|.|++. ++.|.|.|||+|||.||+.||+.|+.
T Consensus         5 ~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence            4579999999999999998 8899888889999 999999999885 57899999999999999999999975

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.3e-16  Score=132.32  Aligned_cols=72  Identities=32%  Similarity=0.369  Sum_probs=64.9

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      +...|||+.||||||++++.+|.|+++..  .|++.|++.|.|+|..|..+.|.+|||+|||+||+.||+.|..
T Consensus        23 p~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~   94 (128)
T d1whna_          23 PPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence            45689999999999999999999999875  4778999999999999988776479999999999999999964

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.2e-15  Score=128.96  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             CChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809          100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS  172 (418)
Q Consensus       100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I-----~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~  172 (418)
                      .|||++||||||+++++ |.|.+. ..||+| +.|+|+|.|     ++..++.|.|+|||+|||.||+.||+.|....-
T Consensus        26 ~n~Ks~LqE~~Qk~k~~-p~Y~i~-~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g~  102 (113)
T d1uila_          26 ENAKARLNQYFQKEKIQ-GEYKYT-QVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV  102 (113)
T ss_dssp             HHHHHHHHHHHHHSCCC-CCCEEE-EESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cCHHHHHHHHHHhCCCC-CceEEe-eeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHcCC
Confidence            58899999999999986 999976 469999 999999999     567788999999999999999999999976553

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4.3e-15  Score=128.13  Aligned_cols=70  Identities=23%  Similarity=0.218  Sum_probs=62.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHh
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G-~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ...|||++||||||++++++|.|+++..  .+++.|+|+|.|+|..|..+.| +|||+|||.||+.||+.|..
T Consensus        24 ~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~   94 (128)
T d1whna_          24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHhcCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999998753  2338999999999999998876 89999999999999999953

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.2e-15  Score=117.35  Aligned_cols=67  Identities=28%  Similarity=0.286  Sum_probs=61.2

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL   85 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~   85 (418)
                      ..+||++.|||||++     +.|+++. +||+|.+.|++.|.|+|..| .|.| +|||+||++||+.||+.|...
T Consensus         2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G-~SKK~Ak~~AA~~aL~~L~~~   69 (71)
T d2b7va1           2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSG-RNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEE-SSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecC-CCHHHHHHHHHHHHHHHHHcc
Confidence            568999999999864     4899987 89999999999999999987 8999 999999999999999998764

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=4.7e-15  Score=117.92  Aligned_cols=72  Identities=17%  Similarity=0.027  Sum_probs=63.1

Q ss_pred             CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEE-CCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809           98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSS  170 (418)
Q Consensus        98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I-~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~  170 (418)
                      ...|+|+.||||||+.++. |.|++...++++|+.|++.|.| ++..++.|.|.|||+|||.||+.||+.+...
T Consensus         4 id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~l   76 (81)
T d1t4oa_           4 LDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML   76 (81)
T ss_dssp             CCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred             cccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhccHH
Confidence            3579999999999999996 9999998777788778888887 5677889999999999999999999987654

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.7e-15  Score=115.02  Aligned_cols=65  Identities=20%  Similarity=0.246  Sum_probs=59.6

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ..|+++.|||||++     +.|++....||.| +.|+|.|.|+|..| .|.|+|||+|||.||+.||+.|..
T Consensus         3 ~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~   68 (71)
T d2b7va1           3 GKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             SSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHc
Confidence            57999999999874     5799988889999 99999999999988 799999999999999999999865

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=7.8e-15  Score=116.64  Aligned_cols=72  Identities=25%  Similarity=0.104  Sum_probs=61.8

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEE-CCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIV-DDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V-~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      ....|+|+.||||||+.++. |.|+++..|++|++.|.+.|.| ++..++.|.| .|||+|||+||+.||+.+..
T Consensus         3 ~id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g-~SKK~AEq~AA~~aL~~~~~   75 (81)
T d1t4oa_           3 KLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVG-RNIKIAGIRAAENALRDKKM   75 (81)
T ss_dssp             CCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEE-SSHHHHHHHHHHHHHHCHHH
T ss_pred             ccccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEeccc-chhhHHHHHHHHHHHHhccH
Confidence            45789999999999999985 9999999666666778888887 5667789999 89999999999999986643

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=108.25  Aligned_cols=68  Identities=26%  Similarity=0.350  Sum_probs=59.2

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809           12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG   86 (418)
Q Consensus        12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~   86 (418)
                      ...||++.|+|+     .+.|.|+++. +||+|.+.|++.|.|+|..| .|.| +|||+|||+||+.||+.|....
T Consensus        10 ~~~n~~~~L~e~-----~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G-~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          10 DLMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASG-PSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             SCTHHHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHTCCC
T ss_pred             cccCHHHHHHHh-----CCCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCC-CCHHHHHHHHHHHHHHHhCCCC
Confidence            346888888886     2568999987 89999999999999999987 7999 9999999999999999996543

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.5e-13  Score=107.96  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=58.3

Q ss_pred             CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809           99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA  171 (418)
Q Consensus        99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~  171 (418)
                      ..|+++.|+|+     .+.|.|.+..+.||+| +.|+|.|.|+|..| .|.|+|||+|||.||+.||+.|+...
T Consensus        11 ~~n~~~~L~e~-----~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          11 LMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             CTHHHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccCHHHHHHHh-----CCCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence            45777777776     3568999988889999 99999999999987 59999999999999999999997543

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=4.8e-13  Score=104.38  Aligned_cols=67  Identities=28%  Similarity=0.374  Sum_probs=56.7

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809           14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK   84 (418)
Q Consensus        14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~   84 (418)
                      .+||+.|+++.+.+  ..|.|+++. +|++|.+.|++.|+|+|..| .|.| +|||+|||+||+.||+.|.+
T Consensus         4 ~~pK~~l~~L~e~~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G-~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           4 VLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSG-PTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSSHHHHHHHHHHC--SCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEE-SSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHhcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCC-CcHHHHHHHHHHHHHHHHhh
Confidence            35566655554433  468999987 79999999999999999987 8999 99999999999999999865

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=9.7e-13  Score=102.62  Aligned_cols=66  Identities=26%  Similarity=0.264  Sum_probs=54.8

Q ss_pred             ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809          101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS  169 (418)
Q Consensus       101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~  169 (418)
                      ++|+.|+++-+.  .+.|.|++..+.||.| +.|+|.|.|+|..| .|.|+|||+|||.||+.||+.|..
T Consensus         5 ~pK~~l~~L~e~--~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHhc--CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhh
Confidence            345555554332  2568999988889999 99999999999988 799999999999999999999854