Citrus Sinensis ID: 014874

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MNSLTMLSTARIYTPLNHSPQRQRFGGSQSKRNVVFPSLSFRTPKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEELAESVGAPSG
cccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEEEEEEccccccccccccccccccccccccccccHHcHHHHHccccccccccccccccEEEEEEEcccccccccccccccHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccccHHHHcccccccccccccEccccccEEEEccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEccccEEEEEcccccccccEEcccEEEEEccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEEcccccccccccEEEEEcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccc
mnsltmlstariytplnhspqrqrfggsqskrnvvfpslsfrtpklicmaepYLITKLESAAKTWKDLSvkladpevvsnpsEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLllpsdpldaRNIMLEVragaggdeagiWAGDLVRMYQKYSeqnswkctlissseaekggFKTVVMEIKGNRVYSKLKyesgvhrvqrvpqteaqgrvhtstatvaimpeadevevvidpkdielttarsggaggqnvnKVETAIdlfhkptgirifCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIrtynykdnrvtdhrlkmnfeltsfldgnidNAVQSCAAMEQKELLEELAesvgapsg
MNSLTMLSTAriytplnhspqrqrfggsqskrnvvfpslsfrtpkliCMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRAlakengndeEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCtlissseaekggfKTVVMEIKGNRVYSKLkyesgvhrvqrvpqteaqgrvhtstatvaimpeadevevvIDPKDIELttarsggaggqnvNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVreqqekirtqrlsqvgtgaraekirtynykdnrvtdhRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEElaesvgapsg
MNSLTMLSTARIYTPLNHSPQRQRFGGSQSKRNVVFPSLSFRTPKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAseikslsnelieleeklkvlllPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEELAESVGAPSG
*********************************VVFPSLSFRTPKLICMAEPYLITKLESAAKTWKDLSVKLA*******************************************************************ELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQR**********HTSTATVAIMPEADEVEVVIDPKDIELTTAR**GAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVR*************VGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCA********************
**********RIYTP********************************CMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEI*********LEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLY***********************RAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQK***************
MNSLTMLSTARIYTPLNHSPQRQRFGGSQSKRNVVFPSLSFRTPKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQ*********RAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLE***********
***************LNHSPQRQRFGGSQSKRNVVFPSLSFRTPKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEK************ARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEE**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNSLTMLSTARIYTPLNHSPQRQRFGGSQSKRNVVFPSLSFRTPKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMxxxxxxxxxxxxxxxxxxxxxLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEELAESVGAPSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
Q8DMG9364 Peptide chain release fac yes no 0.865 0.989 0.652 1e-141
Q110D7369 Peptide chain release fac yes no 0.879 0.991 0.628 1e-138
B0JYC5366 Peptide chain release fac yes no 0.865 0.983 0.633 1e-138
B8HXV0364 Peptide chain release fac yes no 0.865 0.989 0.633 1e-138
Q5N0T6368 Peptide chain release fac yes no 0.867 0.980 0.617 1e-137
Q31L36368 Peptide chain release fac yes no 0.867 0.980 0.617 1e-137
P74707365 Peptide chain release fac N/A no 0.870 0.991 0.621 1e-136
Q3MF91366 Peptide chain release fac yes no 0.877 0.997 0.627 1e-136
Q8YPK9366 Peptide chain release fac yes no 0.877 0.997 0.630 1e-136
B2ITM5365 Peptide chain release fac yes no 0.870 0.991 0.621 1e-135
>sp|Q8DMG9|RF1_THEEB Peptide chain release factor 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=prfA PE=3 SV=1 Back     alignment and function desciption
 Score =  503 bits (1295), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/360 (65%), Positives = 295/360 (81%)

Query: 49  MAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCE 108
           MAE YL+ KL +  +T+ +L+ +LADP+V  NP+E+QK+A+S A L+E V+ Y +++   
Sbjct: 1   MAEAYLLEKLRTVEQTFTELTRRLADPDVAVNPTEFQKVARSRAALEETVNAYHEWQSLN 60

Query: 109 KQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEV 168
           +QL ++R L KE  N+ E+ +M   EI  LS+ + +LEE+LK+LLLP DP D +NIMLE+
Sbjct: 61  QQLVDARQLHKEAANEPELRQMAEEEIAHLSHRIAQLEERLKILLLPRDPNDEKNIMLEI 120

Query: 169 RAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKL 228
           RAGAGGDEAGIWAGDLVRMY +Y++   W+ TL+S S AE GGFK  ++EIKG+RVYSKL
Sbjct: 121 RAGAGGDEAGIWAGDLVRMYSRYAKTQGWQVTLVSESLAEMGGFKEAILEIKGDRVYSKL 180

Query: 229 KYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQN 288
           KYESGVHRVQRVP TEA GR+HTSTATVA+MPE DEVEV IDPKDIELTTARSGGAGGQN
Sbjct: 181 KYESGVHRVQRVPATEASGRIHTSTATVAVMPEVDEVEVEIDPKDIELTTARSGGAGGQN 240

Query: 289 VNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLS 348
           VNKVETA+DL+HKPTGIRIFCTEER+QL+NK RA Q+LRAKLYEIK+REQQE I + R S
Sbjct: 241 VNKVETAVDLYHKPTGIRIFCTEERSQLKNKERAFQILRAKLYEIKLREQQEAITSMRRS 300

Query: 349 QVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEELA 408
           QVGTG R+EKIRTYNYKD+RVTDHRL  NF L+S L+G+++  +Q+C + +Q+E L +LA
Sbjct: 301 QVGTGDRSEKIRTYNYKDDRVTDHRLGQNFSLSSVLEGDLEPIIQACISRDQQEQLAQLA 360
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
>sp|Q110D7|RF1_TRIEI Peptide chain release factor 1 OS=Trichodesmium erythraeum (strain IMS101) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B0JYC5|RF1_MICAN Peptide chain release factor 1 OS=Microcystis aeruginosa (strain NIES-843) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B8HXV0|RF1_CYAP4 Peptide chain release factor 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q5N0T6|RF1_SYNP6 Peptide chain release factor 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q31L36|RF1_SYNE7 Peptide chain release factor 1 OS=Synechococcus elongatus (strain PCC 7942) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|P74707|RF1_SYNY3 Peptide chain release factor 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q3MF91|RF1_ANAVT Peptide chain release factor 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q8YPK9|RF1_NOSS1 Peptide chain release factor 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B2ITM5|RF1_NOSP7 Peptide chain release factor 1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=prfA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
225436757411 PREDICTED: peptide chain release factor 0.983 0.995 0.808 0.0
356505530429 PREDICTED: peptide chain release factor 0.992 0.962 0.787 0.0
449498433416 PREDICTED: peptide chain release factor 0.896 0.896 0.860 0.0
224131216416 predicted protein [Populus trichocarpa] 0.990 0.990 0.798 0.0
297821206417 hypothetical protein ARALYDRAFT_907869 [ 0.985 0.983 0.769 0.0
356570949428 PREDICTED: peptide chain release factor 0.992 0.964 0.786 0.0
22331914422 Peptide chain release factor 1 [Arabidop 0.997 0.983 0.769 0.0
255559292370 peptide chain release factor, putative [ 0.889 1.0 0.864 0.0
357155899411 PREDICTED: peptide chain release factor 0.935 0.946 0.761 1e-176
357511181421 Peptide chain release factor [Medicago t 0.992 0.980 0.765 1e-175
>gi|225436757|ref|XP_002269884.1| PREDICTED: peptide chain release factor 1 [Vitis vinifera] gi|296086617|emb|CBI32252.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/418 (80%), Positives = 368/418 (88%), Gaps = 9/418 (2%)

Query: 1   MNSLTMLSTARIYTPLNHSPQR--QRFGGSQSKRNVVFPSLSFRTPKLICMAEPYLITKL 58
           MNSLT    AR        P R  Q F        +  PS + RTP+++CMAEPYLITKL
Sbjct: 1   MNSLTTSFAARF-------PARAEQVFCNRVRSFALFRPSRTHRTPRIVCMAEPYLITKL 53

Query: 59  ESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALA 118
           ESA KTWK+LSVKLADP++VSNPSEYQKLAQSMAELDEVVST+++FKDCEKQLEE++ALA
Sbjct: 54  ESAEKTWKELSVKLADPDIVSNPSEYQKLAQSMAELDEVVSTFKRFKDCEKQLEEAKALA 113

Query: 119 KENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAG 178
           KE+G D +MAEMIA EI +L+N+L ELEE +KVLLLPSDPLD+RNI+LEVRAG GGDEAG
Sbjct: 114 KEDGIDADMAEMIAYEIGTLTNQLKELEENIKVLLLPSDPLDSRNILLEVRAGTGGDEAG 173

Query: 179 IWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQ 238
           IWAGDLVRMYQKYSE+NSWK   +SSSEAEKGGFKT V+E+KGN VYSKLKYESGVHRVQ
Sbjct: 174 IWAGDLVRMYQKYSERNSWKYAPVSSSEAEKGGFKTYVLEVKGNCVYSKLKYESGVHRVQ 233

Query: 239 RVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDL 298
           RVPQTE QGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETA+DL
Sbjct: 234 RVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAVDL 293

Query: 299 FHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEK 358
           FHKPTGIRIFCTEERTQLQN+SRALQLLRAKLYEIKVREQQE IR QR SQVGTGARAEK
Sbjct: 294 FHKPTGIRIFCTEERTQLQNRSRALQLLRAKLYEIKVREQQELIRNQRKSQVGTGARAEK 353

Query: 359 IRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEELAESVGAPSG 416
           IRTYNYKDNRVTDHRLKMNFELTSFLDG+I+ AVQSC AMEQKELLEELA SV  P+G
Sbjct: 354 IRTYNYKDNRVTDHRLKMNFELTSFLDGDIETAVQSCVAMEQKELLEELAHSVATPAG 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356505530|ref|XP_003521543.1| PREDICTED: peptide chain release factor 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449498433|ref|XP_004160536.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224131216|ref|XP_002321029.1| predicted protein [Populus trichocarpa] gi|222861802|gb|EEE99344.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297821206|ref|XP_002878486.1| hypothetical protein ARALYDRAFT_907869 [Arabidopsis lyrata subsp. lyrata] gi|297324324|gb|EFH54745.1| hypothetical protein ARALYDRAFT_907869 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356570949|ref|XP_003553645.1| PREDICTED: peptide chain release factor 1-like [Glycine max] Back     alignment and taxonomy information
>gi|22331914|ref|NP_191850.2| Peptide chain release factor 1 [Arabidopsis thaliana] gi|19699096|gb|AAL90914.1| AT3g62910/T20O10_10 [Arabidopsis thaliana] gi|21928033|gb|AAM78045.1| AT3g62910/T20O10_10 [Arabidopsis thaliana] gi|34392768|dbj|BAC82693.1| Chloroplast Release Factor 1 [Arabidopsis thaliana] gi|332646889|gb|AEE80410.1| Peptide chain release factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255559292|ref|XP_002520666.1| peptide chain release factor, putative [Ricinus communis] gi|223540051|gb|EEF41628.1| peptide chain release factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357155899|ref|XP_003577275.1| PREDICTED: peptide chain release factor 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357511181|ref|XP_003625879.1| Peptide chain release factor [Medicago truncatula] gi|355500894|gb|AES82097.1| Peptide chain release factor [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2099137422 APG3 "AT3G62910" [Arabidopsis 0.997 0.983 0.736 3.3e-157
TIGR_CMR|CHY_2563358 CHY_2563 "peptide chain releas 0.846 0.983 0.418 8.7e-79
TIGR_CMR|GSU_3104355 GSU_3104 "peptide chain releas 0.848 0.994 0.416 9e-77
TIGR_CMR|BA_5572355 BA_5572 "peptide chain release 0.843 0.988 0.390 3.1e-74
TIGR_CMR|CBU_1965361 CBU_1965 "peptide chain releas 0.855 0.986 0.397 3.6e-73
TIGR_CMR|DET_1210355 DET_1210 "peptide chain releas 0.843 0.988 0.413 7.5e-73
UNIPROTKB|Q9KQ25362 prfA "Peptide chain release fa 0.850 0.977 0.385 2.3e-71
TIGR_CMR|VC_2179362 VC_2179 "peptide chain release 0.850 0.977 0.385 2.3e-71
TIGR_CMR|CJE_1784355 CJE_1784 "peptide chain releas 0.838 0.983 0.394 5.5e-70
TIGR_CMR|SO_3833363 SO_3833 "peptide chain release 0.858 0.983 0.376 1.4e-69
TAIR|locus:2099137 APG3 "AT3G62910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
 Identities = 308/418 (73%), Positives = 348/418 (83%)

Query:     1 MNS-LTMLSTARIYTPLNHSPQRQRFGGSQSKRNVVF--PSLSFRTPKLICMAEPYLITK 57
             MNS +T   TAR +  L+ SP   R   S S   +V   PS S RT +L+CMAEPYLI K
Sbjct:     1 MNSSMTTSPTARAFLHLHSSPFTLRSRKSPSGVCLVSWPPSRSRRTRRLVCMAEPYLIRK 60

Query:    58 LESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRAL 117
             +ES  KTWK+LSVKLADP+VVSN SEYQKLAQSM+ELDEVV+ +R+FKDCEKQL ES+ L
Sbjct:    61 MESVEKTWKELSVKLADPDVVSNQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKVL 120

Query:   118 AKENGNDEEMAEMIAXXXXXXXXXXXXXXXXXXXXXXPSDPLDARNIMLEVRAGAGGDEA 177
             AKE G+DE+MAEMI                       PSDPLDARNI+LEVRAG GGDEA
Sbjct:   121 AKEAGDDEDMAEMIGSEINSLTKEIEELEKQLKVLLLPSDPLDARNILLEVRAGTGGDEA 180

Query:   178 GIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRV 237
              IW GDLVRMYQ+YSE++SWK +++S SEAE GG+KT VMEIKGNRVYSKLKYESGVHRV
Sbjct:   181 AIWTGDLVRMYQRYSERSSWKFSMVSCSEAEHGGYKTCVMEIKGNRVYSKLKYESGVHRV 240

Query:   238 QRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAID 297
             QRVPQTE QGRVHTSTATVAIMPEADEVEVVIDPKDIELT+ARSGGAGGQNVNKVETAID
Sbjct:   241 QRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTSARSGGAGGQNVNKVETAID 300

Query:   298 LFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAE 357
             LFHKP+GIRIFCTEERTQ++NK+RA QLLRAKLYEIKVREQQEKIR +R SQVGTGAR+E
Sbjct:   301 LFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQEKIRNERKSQVGTGARSE 360

Query:   358 KIRTYNYKDNRVTDHRLKMNFELTSFLDGNIDNAVQSCAAMEQKELLEELAESVGAPS 415
             KIRTYNYKD+RVTDHRLKMNF LT+FLDG +++AVQ+CAA+EQKEL+EEL+ESV A S
Sbjct:   361 KIRTYNYKDSRVTDHRLKMNFALTTFLDGALEDAVQACAALEQKELMEELSESVAASS 418
GO:0003747 "translation release factor activity" evidence=IGI;ISS
GO:0006415 "translational termination" evidence=IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009658 "chloroplast organization" evidence=IMP;NAS
GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP
GO:0032544 "plastid translation" evidence=IGI
GO:0006783 "heme biosynthetic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TIGR_CMR|CHY_2563 CHY_2563 "peptide chain release factor 1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3104 GSU_3104 "peptide chain release factor 1" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5572 BA_5572 "peptide chain release factor 1" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1965 CBU_1965 "peptide chain release factor 1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1210 DET_1210 "peptide chain release factor 1" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQ25 prfA "Peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2179 VC_2179 "peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1784 CJE_1784 "peptide chain release factor 1" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3833 SO_3833 "peptide chain release factor 1" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q110D7RF1_TRIEINo assigned EC number0.62840.87980.9918yesno
C0QTI3RF1_PERMHNo assigned EC number0.45580.86290.9944yesno
B8HXV0RF1_CYAP4No assigned EC number0.63330.86530.9890yesno
B1XJH8RF1_SYNP2No assigned EC number0.60830.86530.9917yesno
Q8YPK9RF1_NOSS1No assigned EC number0.63010.87740.9972yesno
Q2LWU9RF1_SYNASNo assigned EC number0.47880.84370.9831yesno
Q0ID34RF1_SYNS3No assigned EC number0.52800.85570.9780yesno
Q318L3RF1_PROM9No assigned EC number0.56420.86050.9835yesno
B0JYC5RF1_MICANNo assigned EC number0.63330.86530.9836yesno
P74707RF1_SYNY3No assigned EC number0.62150.87010.9917N/Ano
A3PF19RF1_PROM0No assigned EC number0.56700.86050.9835yesno
B2ITM5RF1_NOSP7No assigned EC number0.62150.87010.9917yesno
Q5N0T6RF1_SYNP6No assigned EC number0.61770.86770.9809yesno
Q180Y2RF1_CLOD6No assigned EC number0.45140.83650.9830yesno
Q46IT8RF1_PROMTNo assigned EC number0.550.86530.9863yesno
B7KI17RF1_CYAP7No assigned EC number0.64080.87010.9783yesno
A5GVY9RF1_SYNR3No assigned EC number0.52480.87010.9945yesno
Q7U4H2RF1_SYNPXNo assigned EC number0.54840.86770.9890yesno
A4XJN1RF1_CALS8No assigned EC number0.45780.85090.9971yesno
B8E003RF1_DICTDNo assigned EC number0.45100.87980.9972yesno
A9BCL8RF1_PROM4No assigned EC number0.54010.86770.9890yesno
Q3MF91RF1_ANAVTNo assigned EC number0.62730.87740.9972yesno
Q31L36RF1_SYNE7No assigned EC number0.61770.86770.9809yesno
Q7V9Z0RF1_PROMANo assigned EC number0.52770.86530.9863yesno
A2C4X1RF1_PROM1No assigned EC number0.550.86530.9863yesno
Q3AMQ9RF1_SYNSCNo assigned EC number0.52050.87741.0yesno
A5GIR6RF1_SYNPWNo assigned EC number0.53050.86530.9863yesno
A8G733RF1_PROM2No assigned EC number0.56980.86050.9835yesno
Q8XIB9RF1_CLOPENo assigned EC number0.46080.85570.9888yesno
Q2JUK1RF1_SYNJANo assigned EC number0.58720.86530.9972yesno
Q7ND15RF1_GLOVINo assigned EC number0.55610.87250.9972yesno
B0C424RF1_ACAM1No assigned EC number0.62820.83410.9559yesno
A8MJX9RF1_ALKOONo assigned EC number0.44500.85090.9915yesno
B3EE55RF1_CHLL2No assigned EC number0.48300.84370.9831yesno
Q8DMG9RF1_THEEBNo assigned EC number0.65270.86530.9890yesno
C4XIQ1RF1_DESMRNo assigned EC number0.45250.85330.9943yesno
A2BTA9RF1_PROMSNo assigned EC number0.56700.86050.9835yesno
A0Q312RF1_CLONNNo assigned EC number0.45780.85090.9915yesno
Q2JL68RF1_SYNJBNo assigned EC number0.58880.86531.0yesno
B7K205RF1_CYAP8No assigned EC number0.62980.87010.9783yesno
Q2RFW0RF1_MOOTANo assigned EC number0.43940.84850.9915yesno
Q3AW64RF1_SYNS9No assigned EC number0.51240.86770.9890yesno
Q0TNB0RF1_CLOP1No assigned EC number0.46080.85570.9888yesno
B0S2B6RF1_FINM2No assigned EC number0.46300.84130.9859yesno
Q7UZX1RF1_PROMPNo assigned EC number0.56860.85810.9807yesno
Q0SQY1RF1_CLOPSNo assigned EC number0.46080.85570.9888yesno
A2BYQ7RF1_PROM5No assigned EC number0.56660.85090.9725yesno
Q97F68RF1_CLOABNo assigned EC number0.43570.85570.9916yesno
Q7V518RF1_PROMMNo assigned EC number0.51940.86530.9863yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023576001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (411 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025786001
SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (356 aa)
•   • • 0.871
GSVIVG00025807001
RecName- Full=Translation initiation factor IF-2;; One of the essential components for the init [...] (607 aa)
• ••  • 0.770
GSVIVG00007283001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa)
  ••  • 0.749
GSVIVG00036298001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa)
•  •  • 0.723
GSVIVG00020546001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)
•     • 0.707
GSVIVG00033342001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)
   •• • 0.689
GSVIVG00017183001
RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)
•  •  • 0.680
GSVIVG00038605001
SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (468 aa)
• ••  • 0.670
GSVIVG00021387001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (227 aa)
•  •  • 0.664
GSVIVG00015322001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)
•  •• • 0.640

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 0.0
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 1e-171
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 1e-160
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 1e-84
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 2e-73
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 5e-56
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 2e-55
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 1e-52
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 3e-52
pfam00472114 pfam00472, RF-1, RF-1 domain 5e-49
pfam03462115 pfam03462, PCRF, PCRF domain 3e-48
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 5e-48
smart00937116 smart00937, PCRF, This domain is found in peptide 3e-47
PRK08179200 PRK08179, prfH, peptide chain release factor-like 1e-13
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 3e-12
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 1e-11
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 7e-04
PRK05431425 PRK05431, PRK05431, seryl-tRNA synthetase; Provisi 0.003
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information 
 Score =  546 bits (1410), Expect = 0.0
 Identities = 176/360 (48%), Positives = 264/360 (73%), Gaps = 2/360 (0%)

Query: 51  EPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQ 110
           +P ++ KLE+  + +++L   L+DPEV+S+   ++KL++  AEL+ +V  YR++K  ++ 
Sbjct: 1   KPSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQED 60

Query: 111 LEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRA 170
           LEE++ + +E  +D EM EM   E+K L   L ELEE+LK+LLLP DP D +N++LE+RA
Sbjct: 61  LEEAKEMLEE-ESDPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRA 119

Query: 171 GAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKY 230
           G GGDEA ++AGDL RMY +Y+E+  WK  ++S+SE E GG+K V+ EI G+ VYSKLK+
Sbjct: 120 GTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKF 179

Query: 231 ESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVN 290
           ESGVHRVQRVP TE+QGR+HTS ATVA++PEA+EVEV I+PKD+ + T RS GAGGQ+VN
Sbjct: 180 ESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVN 239

Query: 291 KVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQV 350
             ++A+ + H PTGI + C +ER+Q +NK++A+++LRA+LY+ + ++ Q +    R SQV
Sbjct: 240 TTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQV 299

Query: 351 GTGARAEKIRTYNYKDNRVTDHRLKM-NFELTSFLDGNIDNAVQSCAAMEQKELLEELAE 409
           G+G R+E+IRTYN+   RVTDHR+ +  ++L   ++G++D  + +  A +Q E L  L E
Sbjct: 300 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGDLDELIDALIAEDQAEKLAALGE 359

Length = 359
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 100.0
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 100.0
PRK09256138 hypothetical protein; Provisional 99.84
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.57
PRK10636638 putative ABC transporter ATP-binding protein; Prov 89.79
PRK11147635 ABC transporter ATPase component; Reviewed 85.07
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-123  Score=915.36  Aligned_cols=358  Identities=50%  Similarity=0.879  Sum_probs=350.9

Q ss_pred             cchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 014874           51 EPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEM  130 (416)
Q Consensus        51 ~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~  130 (416)
                      .+.|+.+|+.+..+|.+|+..|++|++..|++++++++|++++|.+++++|.+|+++..+++++++|+.++ .|+||++|
T Consensus         2 ~~~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~em   80 (363)
T COG0216           2 KPSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREM   80 (363)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999975 79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCC
Q 014874          131 IASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKG  210 (416)
Q Consensus       131 a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~  210 (416)
                      |++|+..++.++.+++++|+.+|||+||+|++|||||||||+||+||++||++||+||.+||+.+||+|++++.++++.|
T Consensus        81 a~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~G  160 (363)
T COG0216          81 AEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELG  160 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCcc-ccccCCCCeEEEEeeecCCCCccc
Q 014874          211 GFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEV-EVVIDPKDIELTTARSGGAGGQNV  289 (416)
Q Consensus       211 g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~-~~~i~~~dl~i~~~RssGpGGQ~V  289 (416)
                      |||++++.|+|.+||+.||||+|||||||||.|+++||+|||+|||+|||+++++ ++.|+|+||+|+||||||||||||
T Consensus       161 G~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhV  240 (363)
T COG0216         161 GYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHV  240 (363)
T ss_pred             CceEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999875 799999999999999999999999


Q ss_pred             cccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCcc
Q 014874          290 NKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRV  369 (416)
Q Consensus       290 Nkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rV  369 (416)
                      |+|+|||||||+||||||+||++||||+||++||++|++||++.+.+++.++....|++|+|+|+||++|||||||||||
T Consensus       241 NtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfPQnRV  320 (363)
T COG0216         241 NTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFPQNRV  320 (363)
T ss_pred             CccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc-cCccccccC-CcHHHHHHHHHHHHHHHHHHHHh
Q 014874          370 TDHRLKMN-FELTSFLDG-NIDNAVQSCAAMEQKELLEELAE  409 (416)
Q Consensus       370 tDhR~~~~-~~l~~vl~G-~Ld~~I~a~~~~~~~~~l~~~~~  409 (416)
                      ||||||+| |+|+.||+| +||++|++|+.++|+++|+++..
T Consensus       321 TDHRI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~~  362 (363)
T COG0216         321 TDHRINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELGE  362 (363)
T ss_pred             cchhcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999998 899999995 99999999999999999998753

>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 5e-74
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 2e-72
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 3e-72
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 4e-66
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 5e-66
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 3e-43
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 4e-43
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 2e-41
3f1e_X378 Crystal Structure Of A Translation Termination Comp 1e-31
2wh1_Y351 Insights Into Translational Termination From The St 1e-31
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 1e-31
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 1e-31
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 2e-31
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure 
Iteration: 1

 Score =  274 bits (701), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 221/358 (61%), Gaps = 5/358 (1%)
Query: 54  LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEE 113
           ++ KL+   + +++L   L+DPEV+ +   YQ L++  AE+ EV+   R+++   + LE+
Sbjct: 1   MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQ 60
Query: 114 SRALAKENGNDEEMAEMIAXXXXXXXXXXXXXXXXXXXXXXPSDPLDARNIMLEVRAGAG 173
           + +L     +D E+ EM                        P DP+D R+ ++E+RAG G
Sbjct: 61  AESLL----DDPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTG 116
Query: 174 GDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESG 233
           G+EA ++A DL  MY +++E+  ++  ++ S   + GGF  VV E++G   Y   KYESG
Sbjct: 117 GEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESG 176
Query: 234 VHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVE 293
           VHRVQRVP TE QGR+HTSTATVA++P+A+E +  ++  +I +   R+ G GGQ VN  +
Sbjct: 177 VHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTD 236
Query: 294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTG 353
           +A+ + H PTGI + C + R+Q++N+ +AL +LR++L E+K  E+ E++R  RL+Q+GTG
Sbjct: 237 SAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTG 296
Query: 354 ARAEKIRTYNYKDNRVTDHRLKM-NFELTSFLDGNIDNAVQSCAAMEQKELLEELAES 410
            R+EKIRTYN+  +RVTDHR+     +L   L G++   +++    +Q+  L  LAE 
Sbjct: 297 ERSEKIRTYNFPQSRVTDHRIGFTTHDLEGVLSGHLTPILEALKRADQERQLAALAEG 354
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 0.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 1e-173
2b3t_B360 RF-1, peptide chain release factor 1; translation 1e-171
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 1e-155
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 1e-86
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 3e-84
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 6e-45
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 3e-20
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 6e-19
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-13
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
 Score =  510 bits (1316), Expect = 0.0
 Identities = 161/357 (45%), Positives = 236/357 (66%), Gaps = 1/357 (0%)

Query: 54  LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEE 113
           +  +L++    +++L   L+DP+VVS+   + +L++  A   E V+ YR++K   + + +
Sbjct: 15  IYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIAD 74

Query: 114 SRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAG 173
           ++ + K+   D E+ EM   E+K+      E EEKL+ LLLP DP D +NI+LE+R  AG
Sbjct: 75  AQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAG 134

Query: 174 GDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESG 233
           GDEA ++AGDL+ MYQKY+E   WK  ++ +S    GG K VV  + G  VYSKLKYESG
Sbjct: 135 GDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESG 194

Query: 234 VHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVE 293
            HRVQRVP TE+QGRVHTSTATV +MPE +EVE  IDPKD+ +    + GAGGQNVNKV 
Sbjct: 195 AHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVA 254

Query: 294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTG 353
           TA+ + H PT I++   EERTQ +N+ +A++++RA++ +   +  Q++   +R S VGTG
Sbjct: 255 TAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTG 314

Query: 354 ARAEKIRTYNYKDNRVTDHRLKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEELAE 409
            R+E+IRTYN+  NRVTDHR+ +   +L S L G +D  + +    +Q + LEEL +
Sbjct: 315 DRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEELNK 371
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.92
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.92
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.88
2lw1_A89 ABC transporter ATP-binding protein UUP; ABC REG s 95.79
3err_A536 Fusion protein of microtubule binding domain from 80.4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
Probab=100.00  E-value=1.7e-113  Score=859.51  Aligned_cols=350  Identities=40%  Similarity=0.745  Sum_probs=343.2

Q ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874           54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS  133 (416)
Q Consensus        54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e  133 (416)
                      |+.+|+.+.+++++|+.+|++|+||+|++++++++++++.|+++|+.|++|+...++++++.+|++    |+||++||.+
T Consensus         1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~   76 (354)
T 3d5a_X            1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKA   76 (354)
T ss_dssp             CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999874    8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCce
Q 014874          134 EIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFK  213 (416)
Q Consensus       134 El~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~k  213 (416)
                      |+..++.++++++.+|+.+|+|+||+|.+||||||+||+||+||++||+|||+||++||+++||++++++.++++.||||
T Consensus        77 e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k  156 (354)
T 3d5a_X           77 EREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFS  156 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCccccccC
Q 014874          214 TVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVE  293 (416)
Q Consensus       214 s~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~  293 (416)
                      +|++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+++|+|||||||||||||+
T Consensus       157 ~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~  236 (354)
T 3d5a_X          157 KVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTD  236 (354)
T ss_dssp             EEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred             EEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCcccccc
Q 014874          294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDHR  373 (416)
Q Consensus       294 saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVtDhR  373 (416)
                      |||||+|+||||+|+||++|||++||+.||++|+++|++.+.+++.++....|++++++|+||++||||||||+||||||
T Consensus       237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q~rVtDhR  316 (354)
T 3d5a_X          237 SAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHR  316 (354)
T ss_dssp             CEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETT
T ss_pred             ceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCCCeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc-cCccccccCCcHHHHHHHHHHHHHHHHHHH
Q 014874          374 LKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEEL  407 (416)
Q Consensus       374 ~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~~~l~~~  407 (416)
                      ||++ +||++||+|+||+||++|+.++++++|+++
T Consensus       317 ~~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~~  351 (354)
T 3d5a_X          317 IGFTTHDLEGVLSGHLTPILEALKRADQERQLAAL  351 (354)
T ss_dssp             TTEEECCHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCceeCChHHhhCCchHHHHHHHHHHHHHHHHHhh
Confidence            9997 899999999999999999999999999876
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 3e-81
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 1e-75
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 2e-67
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 2e-16
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  251 bits (643), Expect = 3e-81
 Identities = 106/347 (30%), Positives = 190/347 (54%), Gaps = 16/347 (4%)

Query: 55  ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEES 114
               ++  +  ++++ +L  P+V + P   Q L +  + L+ VV T  + K   + +   
Sbjct: 21  YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80

Query: 115 RALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGG 174
             LA    +DEE      +E+      L E   +L+   + S   D+ +  L+++AG+GG
Sbjct: 81  LELA-VEADDEETFNEAVAELD----ALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGG 135

Query: 175 DEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGV 234
            EA  WA  L RMY +++E   +K  +I  SE E  G K+V ++I G+  Y  L+ E+GV
Sbjct: 136 TEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGV 195

Query: 235 HRVQRVPQTEAQGRVHTSTATVAIMPEADE-VEVVIDPKDIELTTARSGGAGGQNVNKVE 293
           HR+ R    ++ GR HTS ++  + PE D+ +++ I+P D+ +   R+ GAGGQ+VN+ E
Sbjct: 196 HRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTE 255

Query: 294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKI--RTQRLSQVG 351
           +A+ + H PTGI   C  +R+Q +NK +A++ ++AKLYE++++++  +        S +G
Sbjct: 256 SAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG 315

Query: 352 TGARAEKIRTYNYKDNRVTDHRLKMNFELT---SFLDGNIDNAVQSC 395
            G    +IR+Y   D+R+ D R     E     + LDG++D  +++ 
Sbjct: 316 WG---SQIRSYVLDDSRIKDLRT--GVETRNTQAVLDGSLDQFIEAS 357
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.81
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.9e-112  Score=852.64  Aligned_cols=338  Identities=31%  Similarity=0.541  Sum_probs=317.9

Q ss_pred             HHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 014874           55 ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASE  134 (416)
Q Consensus        55 ~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eE  134 (416)
                      +.+++.+++|+++|+.+|+||+||+||++|++++|+++.|+++|+.|+.|++..++++++.+|+.++ +|++|.+++..+
T Consensus        21 ~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~ee-~deel~~e~~~~   99 (362)
T d1gqea_          21 YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA-DDEETFNEAVAE   99 (362)
T ss_dssp             HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999999999999999998764 689999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceE
Q 014874          135 IKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKT  214 (416)
Q Consensus       135 l~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks  214 (416)
                      +..+...+++++    ..++|+||+|.++|||||+||+||+||++||+|||+||++||+++||++++++.++++.||||+
T Consensus       100 l~~l~~~l~~le----~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e~gG~K~  175 (362)
T d1gqea_         100 LDALEEKLAQLE----FRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKS  175 (362)
T ss_dssp             HHHHHHHHHHHG----GGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEE
T ss_pred             HHHHhhhhhHHH----HhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCCeEEEeccccCCccceeE
Confidence            998888877664    8889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccC-CccccccCCCCeEEEEeeecCCCCccccccC
Q 014874          215 VVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEA-DEVEVVIDPKDIELTTARSGGAGGQNVNKVE  293 (416)
Q Consensus       215 ~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~-~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~  293 (416)
                      |++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++ +++++.|+++||+|+|||||||||||||||+
T Consensus       176 v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~vN~t~  255 (362)
T d1gqea_         176 VTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTE  255 (362)
T ss_dssp             EEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSC
T ss_pred             EEEEEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCCccceecChHHeEEEEeecCCCCccchhhhh
Confidence            999999999999999999999999999999999999999999999997 5689999999999999999999999999999


Q ss_pred             ccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCcccccc
Q 014874          294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDHR  373 (416)
Q Consensus       294 saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVtDhR  373 (416)
                      |||||||+||||+|+||++|||++||+.||++|++||++++.+++.++....+. +....+||++||||||||+||||||
T Consensus       256 savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g~~iRtY~~~~~rv~DhR  334 (362)
T d1gqea_         256 SAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMED-NKSDIGWGSQIRSYVLDDSRIKDLR  334 (362)
T ss_dssp             CEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCST-TCCCCCSCSEEEEEEGGGTEEEETT
T ss_pred             ceeEEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCcCcCCccCccCCCCcccccc
Confidence            999999999999999999999999999999999999999998877666554433 3344568899999999999999999


Q ss_pred             cccc-cCccccccCCcHHHHHHHHHH
Q 014874          374 LKMN-FELTSFLDGNIDNAVQSCAAM  398 (416)
Q Consensus       374 ~~~~-~~l~~vl~G~Ld~~I~a~~~~  398 (416)
                      ||++ +||+.||+|+||+||++|+..
T Consensus       335 ~~~~~~~~~~vl~G~ld~~i~a~l~~  360 (362)
T d1gqea_         335 TGVETRNTQAVLDGSLDQFIEASLKA  360 (362)
T ss_dssp             TCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred             cCCeeCChhHHhCCCHHHHHHHHHHC
Confidence            9997 899999999999999999864
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure