Citrus Sinensis ID: 014875

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MVAPLMEETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
ccccEEEcccccccEEEcccccEEEEcccccccEEEEEEEccccccccccccccEEccEEEEccccccEEEEEcccccEEEEEccccccccEEEEEEccccccccccccccEEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEEcccccEEEEEEcccccEEEEEEccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEccccccccccccEEEccccccEEEEEEccccEEEEEccccEEEEEccccccccccccccccEEEEEEEEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEccEEEEccccccccccEEEEEcccccEEEEEEccccccc
ccccccccccccccEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccEHHHHccccEEEEEEcccEEEEEEccccccccEEEEEccccccccccccccccccccEHHHHccccEEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEccccccEEEEEccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEEccccccccccccEEEccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccHHHHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccccccEEEEEEEccccEEEEEcccccccc
MVAPLMEETEKGKSALInnakpkieeeEEEQQVVKVWswgagtdgqlgtgrlhdelspqllnlsslssvsmLACGGAHvlaltspssviggkvfswgrgssgqlghgemvdalypkpvtffdghrytithisagwnhsgfvsdsgclftcgdgtfgqlghgdyrshsspvkvssFVNKNVHQIACGMRHSLVLLKDclgnqvygfgsgkrgqlgvskdrirsvslpqvtiglhdieivgisangdrsaALSAeghlytwgrgfnstsdvncpqslpsslsfsQAALGWNHVLVLTgdgevlmlggshhgmlsdpervsstrplSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAimtwgwgehgqlglgntcdqihpkvvnlgdefqnrdtqLEVFCGSgftyaisrhclpsqt
mvaplmeetekgksalinnakpkieeEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGfgsgkrgqlgvskdrirsVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAagaehsavVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISrhclpsqt
MVAPLMEETEKGKSALINNAKPKIeeeeeeQQVVKVWSWGAGTDGQLGTGRLHDElspqllnlsslssvsmlACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCpqslpsslsfsqaaLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
********************************VVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCP*****SLSFSQAALGWNHVLVLTGDGEVLMLGGS******************VALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCL****
MVAPLM*ETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLP***
**********KGKSALINNAKPK**********VKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGML**********PLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
****LMEETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVAPLMEETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.800 0.756 0.311 2e-35
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.740 0.063 0.327 2e-31
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.735 0.062 0.312 7e-31
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.661 0.260 0.313 1e-26
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.658 0.259 0.312 2e-26
Q15034 1050 Probable E3 ubiquitin-pro no no 0.723 0.286 0.297 3e-26
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.786 0.309 0.305 4e-26
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.721 0.062 0.319 4e-26
O95714 4834 E3 ubiquitin-protein liga no no 0.721 0.062 0.316 1e-25
Q92834 1020 X-linked retinitis pigmen no no 0.637 0.259 0.317 1e-25
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 161/353 (45%), Gaps = 20/353 (5%)

Query: 36  VWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFS 95
           V SWG G DGQLG G   D  SP  L+      +  + CG  H +A +      G +V+S
Sbjct: 36  VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQS----GMEVYS 91

Query: 96  WGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTF 155
           WG G  G+LGHG   D   P P+    G R  I  I+ G +H   V+  G + + G    
Sbjct: 92  WGWGDFGRLGHGNSSDLFTPLPIKALHGIR--IKQIACGDSHCLAVTMEGEVQSWGRNQN 149

Query: 156 GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215
           GQLG GD      P K+ +F    +  +A G  H+  + +D     +YG+G G+ G LG+
Sbjct: 150 GQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED---GDLYGWGWGRYGNLGL 206

Query: 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR----GFNSTSDVNC 271
                R V     + G   + +V        S + S   + Y W +    G     D   
Sbjct: 207 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 266

Query: 272 PQSLPS-SLSF-SQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEK 329
           P  L + S SF SQ + GW H + LT DG++   G +  G +     +    P+ V    
Sbjct: 267 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 325

Query: 330 VSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVV 382
               D  KV+Q++ G  H+  VTE   +  WG G +GQLG+G + D+  PK++
Sbjct: 326 ----DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 374
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
225424889400 PREDICTED: E3 ubiquitin-protein ligase H 0.915 0.952 0.647 1e-143
296086438405 unnamed protein product [Vitis vinifera] 0.939 0.965 0.642 1e-140
224134180390 predicted protein [Populus trichocarpa] 0.882 0.941 0.635 1e-133
356497843388 PREDICTED: probable E3 ubiquitin-protein 0.915 0.981 0.614 1e-131
357486571 615 RCC1 and BTB domain-containing protein [ 0.918 0.621 0.593 1e-130
297850954388 regulator of chromosome condensation fam 0.875 0.938 0.626 1e-129
356501930388 PREDICTED: probable E3 ubiquitin-protein 0.906 0.971 0.613 1e-128
15223423386 regulator of chromosome condensation-lik 0.891 0.961 0.626 1e-128
255558248387 protein with unknown function [Ricinus c 0.911 0.979 0.597 1e-125
449435362 608 PREDICTED: probable E3 ubiquitin-protein 0.894 0.611 0.592 1e-124
>gi|225424889|ref|XP_002269566.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 265/409 (64%), Positives = 313/409 (76%), Gaps = 28/409 (6%)

Query: 25  EEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSS---VSMLACGGAHVLA 81
           E E ++   V++WSWGAGTDGQLGT RL DE  PQLL+L   SS   +S+LACGGAHVLA
Sbjct: 3   ENERDKGGEVEIWSWGAGTDGQLGTTRLEDEHLPQLLDLPRFSSAGPISLLACGGAHVLA 62

Query: 82  LTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFV 141
           LT+      GKV +WGRG+SGQLGHG+MV +L PK V   +   + +TH+SAGW+HSGFV
Sbjct: 63  LTTD-----GKVVTWGRGTSGQLGHGDMVSSLQPKHVKLLE--SFVMTHVSAGWSHSGFV 115

Query: 142 SDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQ 201
           SD+GCLFTCGDG+FGQLGHGD +SH SPVKVS F +K+V QIACGMRHSLVLLK   G+Q
Sbjct: 116 SDTGCLFTCGDGSFGQLGHGDCKSHCSPVKVSYFDSKHVDQIACGMRHSLVLLK---GDQ 172

Query: 202 VYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR 261
           VYGFGSGKRGQLGVS D  RS+S+PQ T+GL  +EI+ I ANGD SAALSA GHLYTWGR
Sbjct: 173 VYGFGSGKRGQLGVSMDNTRSISVPQATVGLEGVEIISIDANGDHSAALSANGHLYTWGR 232

Query: 262 GFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTR 321
           GF STSDV+CP+ LPSSL F+Q ALGWNH+LVLTG GEV MLGG+ HG+L DP++ S  +
Sbjct: 233 GFGSTSDVHCPRCLPSSLCFTQVALGWNHMLVLTGGGEVFMLGGNRHGVLGDPQKGSQVK 292

Query: 322 PLSVA--------------LEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQ 367
            LSV               LEKV  LDG+ V+QIAAGAEHSA+VTENR I TWGWGEHGQ
Sbjct: 293 HLSVIEVFLHGPEESREENLEKVQGLDGLNVVQIAAGAEHSALVTENRVIKTWGWGEHGQ 352

Query: 368 LGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT 416
           LGLGNT DQI P+ V LG     + T ++V+CGSGFT+AI +  +PSQT
Sbjct: 353 LGLGNTYDQISPQAVRLGHRLPGQHTMIKVYCGSGFTFAI-KAVIPSQT 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086438|emb|CBI32027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134180|ref|XP_002321756.1| predicted protein [Populus trichocarpa] gi|222868752|gb|EEF05883.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497843|ref|XP_003517766.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|357486571|ref|XP_003613573.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355514908|gb|AES96531.1| RCC1 and BTB domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297850954|ref|XP_002893358.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297339200|gb|EFH69617.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356501930|ref|XP_003519776.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|15223423|ref|NP_174026.1| regulator of chromosome condensation-like protein [Arabidopsis thaliana] gi|124301018|gb|ABN04761.1| At1g27060 [Arabidopsis thaliana] gi|332192654|gb|AEE30775.1| regulator of chromosome condensation-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255558248|ref|XP_002520151.1| protein with unknown function [Ricinus communis] gi|223540643|gb|EEF42206.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|449435362|ref|XP_004135464.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2205794386 AT1G27060 [Arabidopsis thalian 0.867 0.935 0.579 1.6e-109
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.798 0.754 0.288 5.1e-35
RGD|1306366 1203 Herc1 "HECT and RLD domain con 0.730 0.252 0.322 1.2e-32
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.730 0.062 0.325 2.9e-32
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.730 0.062 0.322 4.7e-32
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.730 0.062 0.322 4.7e-32
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.730 0.062 0.322 4.7e-32
UNIPROTKB|E2QYQ5 4863 HERC1 "Uncharacterized protein 0.730 0.062 0.318 1.4e-30
TAIR|locus:504956339434 RUG1 "AT5G08710" [Arabidopsis 0.846 0.811 0.282 1.3e-29
TAIR|locus:2086253 1045 AT3G23270 "AT3G23270" [Arabido 0.754 0.300 0.319 1.8e-28
TAIR|locus:2205794 AT1G27060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
 Identities = 218/376 (57%), Positives = 260/376 (69%)

Query:    35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
             +VWSWGAGTDGQLGT +L DE                 ACGGAHV+ALTS     GGKVF
Sbjct:    16 QVWSWGAGTDGQLGTTKLQDELLPQLLSLTSLPSISMLACGGAHVIALTS-----GGKVF 70

Query:    95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
             +WGRGSSGQLGHG++++   PK V+FFD     IT  +AGW+HSGFVSDSGC+FTCG+G+
Sbjct:    71 TWGRGSSGQLGHGDILNITLPKLVSFFDDS--VITQAAAGWSHSGFVSDSGCIFTCGNGS 128

Query:   155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
             FGQLGHGD  S S+P KVS F N +V  +ACGMRHSLVL     GNQV GFGSGKRGQLG
Sbjct:   129 FGQLGHGDTLSLSTPAKVSHFNNDSVKMVACGMRHSLVLFA---GNQVCGFGSGKRGQLG 185

Query:   215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCXXX 274
              S DRI+SV+LP V  GL D+E+V ISANGD SAA+SA+G  ++WGRGF    DV+    
Sbjct:   186 FSSDRIKSVNLPCVVSGLKDVEVVRISANGDHSAAISADGQFFSWGRGFCGGPDVHAPQS 245

Query:   275 XXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVAL-EKVSNL 333
                        +GWNH L+LT DGEV  LG +   +   PE+       S AL EKV + 
Sbjct:   246 LPSPLSFREVAVGWNHALLLTVDGEVFKLGST---LNKQPEKQQLQIDSSEALFEKVPDF 302

Query:   334 DGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDT 393
             DGVKV+QIAAGAEHSA VTEN  + TWGWGEHGQLGLGNT DQ  P++V+LG     R  
Sbjct:   303 DGVKVMQIAAGAEHSAAVTENGEVKTWGWGEHGQLGLGNTNDQTSPELVSLGS-IDLRTK 361

Query:   394 QLEVFCGSGFTYAISR 409
             +++V+CGSGFTYA+ R
Sbjct:   362 EIKVYCGSGFTYAVKR 377
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1306366 Herc1 "HECT and RLD domain containing E3 ubiquitin protein ligase family member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086253 AT3G23270 "AT3G23270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00150864
hypothetical protein (390 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_X2024
hypothetical protein (203 aa)
  •     0.485
eugene3.75940001
hypothetical protein (143 aa)
  •     0.480
eugene3.01650001
annotation not avaliable (143 aa)
  •     0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-37
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-11
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-09
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.001
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.003
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  140 bits (355), Expect = 3e-37
 Identities = 107/438 (24%), Positives = 168/438 (38%), Gaps = 72/438 (16%)

Query: 18  NNAKPKIEEEEEEQQVVK---VWSWGAGTDGQLGTGRLHDEL---SPQLLNLSSLSSVSM 71
              K      +    +VK   V+SWG+    +LG G  +DE     PQL     +   S+
Sbjct: 49  IIRKVAQIINKHTHLLVKMASVYSWGSNGMNELGLG--NDETKVDRPQLNPFGRIDKASI 106

Query: 72  --LACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDA----------------L 113
             +ACGG H L L        G ++SWG    G LG     D                  
Sbjct: 107 IKIACGGNHSLGLDHD-----GNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELES 161

Query: 114 YPKPVTFFDG--HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDY------RS 165
            P  V           +  ++ GW  S  ++  G +++ G    G+LG G Y        
Sbjct: 162 TPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSI 221

Query: 166 HSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG--VSKDRIRSV 223
             +P+KV     K + Q+A G  H + L  +    +VYG+GS ++GQLG   S+     V
Sbjct: 222 QFTPLKVP---KKAIVQLAAGADHLIALTNE---GKVYGWGSNQKGQLGRPTSERLKLVV 275

Query: 224 SLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWG-------------RGFNSTSDVN 270
            +           I  ++   D S AL  +G +Y WG                  T+  N
Sbjct: 276 LVGDP---FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332

Query: 271 CPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKV 330
             Q L S ++    + G +H L+L  DG +   G    G L   E ++          K+
Sbjct: 333 YKQ-LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVST---PTKL 388

Query: 331 SNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQN 390
           S     K+ Q+A G  H+   T++ ++ +WGWGEHG LG G     +    +        
Sbjct: 389 SVAI--KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSG 446

Query: 391 RDTQLEVFCGSGFTYAIS 408
            +    +  G G  +++ 
Sbjct: 447 HNI---ILAGYGNQFSVI 461

Length = 476
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.97
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.91
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.83
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.31
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.3
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.22
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.19
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.13
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.09
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.52
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 92.27
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.47
KOG0646476 consensus WD40 repeat protein [General function pr 90.99
KOG0315311 consensus G-protein beta subunit-like protein (con 89.33
KOG3669 705 consensus Uncharacterized conserved protein, conta 88.49
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 87.83
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 86.53
KOG0646 476 consensus WD40 repeat protein [General function pr 85.18
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 80.5
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-53  Score=390.17  Aligned_cols=369  Identities=26%  Similarity=0.465  Sum_probs=288.3

Q ss_pred             chhhhhceeecEEEEEeCCCCCccccCCCCCC-cCCeeeecC--CCCCeEEEEeCCcceEEeeCCCcccCCeEEEEecCC
Q 014875           24 IEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDE-LSPQLLNLS--SLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGS  100 (416)
Q Consensus        24 ~~~~~~~~~~g~v~~wG~n~~GqLG~g~~~~~-~~p~~i~~~--~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~  100 (416)
                      .+.....++...||+||+|...|||+|..... ..|++..+.  +...|++++||+.|+++|++     ||+||+||.|.
T Consensus        58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~-----Dg~lyswG~N~  132 (476)
T COG5184          58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDH-----DGNLYSWGDND  132 (476)
T ss_pred             ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecC-----CCCEEEeccCc
Confidence            33445778889999999999999999987655 688888776  55699999999999999999     99999999999


Q ss_pred             CCccCCCCC-------------C---CeeceeEeeecCC--CcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCC
Q 014875          101 SGQLGHGEM-------------V---DALYPKPVTFFDG--HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGD  162 (416)
Q Consensus       101 ~gqlG~~~~-------------~---~~~~p~~v~~~~~--~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~  162 (416)
                      .|+||....             .   ...+|..+.....  ...++++++||++++++|+++|+||.||....+.++.+.
T Consensus       133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~  212 (476)
T COG5184         133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGS  212 (476)
T ss_pred             ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccc
Confidence            999998761             1   2566777775211  114799999999999999999999999999999988885


Q ss_pred             CCCccc----ceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccC-CCCE
Q 014875          163 YRSHSS----PVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLH-DIEI  237 (416)
Q Consensus       163 ~~~~~~----p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~-~~~i  237 (416)
                      +.+...    ++++... ...|+++++|.+|.++|++   +|+||.||.|..||||...  .+....+..+..+. -..|
T Consensus       213 ~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~---~G~vy~~Gs~qkgqlG~~~--~e~~~~~~lv~~~f~i~~i  286 (476)
T COG5184         213 YKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTN---EGKVYGWGSNQKGQLGRPT--SERLKLVVLVGDPFAIRNI  286 (476)
T ss_pred             ccccccceeeeeeeecC-chheeeeccCCceEEEEec---CCcEEEecCCcccccCCch--hhhcccccccCChhhhhhh
Confidence            443322    3333322 3579999999999999999   9999999999999999983  33333333333332 2347


Q ss_pred             EEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCC----------Ccee--cCCCCCeeEEEecCceEEEEecCCCEEEeeC
Q 014875          238 VGISANGDRSAALSAEGHLYTWGRGFNSTSDVN----------CPQS--LPSSLSFSQAALGWNHVLVLTGDGEVLMLGG  305 (416)
Q Consensus       238 ~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~----------~p~~--~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~  305 (416)
                      ..|+||.+|++||+++|++|+||.|.++|++..          .|..  ++....|..|++|..|+++|..+|.||+||+
T Consensus       287 ~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr  366 (476)
T COG5184         287 KYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR  366 (476)
T ss_pred             hhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence            899999999999999999999999999998865          2222  2345569999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCCeeEEEECCCCEEEEECCCCCCccCCCCCC-ccCceEEec
Q 014875          306 SHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCD-QIHPKVVNL  384 (416)
Q Consensus       306 n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~vy~wG~n~~gqLG~g~~~~-~~~p~~v~~  384 (416)
                      ++.+|||.++.....   ...+.++..  ..++..|+||..|+++.+.+|.||+||+|++||||.|+... ...|+.++-
T Consensus       367 ~~~~qlg~~~~~~~~---~~~~~~ls~--~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~  441 (476)
T COG5184         367 GDRGQLGIQEEITID---VSTPTKLSV--AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ  441 (476)
T ss_pred             CccccccCcccceee---cCCcccccc--ccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccc
Confidence            999999998754222   222233322  23799999999999999999999999999999999997654 457777773


Q ss_pred             CCcccCCCceEEEeecCCeEEEEccC
Q 014875          385 GDEFQNRDTQLEVFCGSGFTYAISRH  410 (416)
Q Consensus       385 ~~~~~~~~~v~~v~~G~~~t~~i~~~  410 (416)
                      +. + ....++..-||.+++++....
T Consensus       442 ~~-~-~~~~~i~~g~~~~~~v~~~~~  465 (476)
T COG5184         442 PL-L-SGHNIILAGYGNQFSVIEETM  465 (476)
T ss_pred             cc-c-CCCceEEeccCcceEEEecch
Confidence            11 1 223566676676666665543

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 7e-32
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-04
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-31
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-04
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-31
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-04
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-31
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 4e-04
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-23
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 9e-13
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 4e-11
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-09
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 6e-09
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 5e-08
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 1e-05
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 164/348 (47%), Gaps = 34/348 (9%)
Query: 73  ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
           + G +H +AL S     G  V SWGRG  GQLGHG+  D   P  ++  DGH+  I  ++
Sbjct: 12  SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 64
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
            G +H+   S SG  +++ G G FG+LGHG+     +P+ + +     + QIACG  H L
Sbjct: 65  CGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGV--SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAA 249
            +  +    +V  +G  + GQLG+  ++D +    +PQ       I I  ++A  + +AA
Sbjct: 125 AVTXE---GEVQSWGRNQNGQLGLGDTEDSL----VPQKIQAFEGIRIKXVAAGAEHTAA 177
Query: 250 LSAEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVL 301
           ++ +G LY WG       G    +D  V                 GW H + ++  G + 
Sbjct: 178 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALY 237
Query: 302 MLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWG 361
             G S +G L   +      P      K+  L    + QI+ GA H+  +T +  +  WG
Sbjct: 238 TYGWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGARHTXALTSDGKLYGWG 292
Query: 362 WGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 409
           W + GQ+G+GN  DQ  P  V     F +    ++V CG   T A++ 
Sbjct: 293 WNKFGQVGVGNNLDQCSPVQV----RFPDDQKVVQVSCGWRHTLAVTE 336
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-103
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-69
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-66
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-49
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-12
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-100
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-89
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-81
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-24
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-89
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-62
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-59
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-36
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-88
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-69
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-58
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-57
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-70
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-61
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-47
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-46
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-33
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-28
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-19
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  311 bits (798), Expect = e-103
 Identities = 94/386 (24%), Positives = 149/386 (38%), Gaps = 29/386 (7%)

Query: 35  KVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVF 94
            ++ WG    GQLG         P      +      L  G   + A+T+      GK++
Sbjct: 21  TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA-----DGKLY 75

Query: 95  SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
           + G G+ G+LG G       P  +            +++G  H   +S  G +++ G+  
Sbjct: 76  ATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAE 135

Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
            G+LGHG+      P  + S     V  +A G  HS  +        +Y +G G+ G+LG
Sbjct: 136 DGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAA---GDLYTWGKGRYGRLG 192

Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGIS--ANGDRSAALSAEGHLYTWGR------GFNST 266
            S    +    P++   L    +V I+  +   ++  L+ +  +++WG       G   +
Sbjct: 193 HSDSEDQLK--PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250

Query: 267 SDVNCPQ--SLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLS 324
                P      + L   +   G    + LT  G V   G   +  L         RP  
Sbjct: 251 DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRP-- 308

Query: 325 VALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNL 384
               +V  L G KVI IA G+ H    TE+  + TWG  + GQLG G T     P++V  
Sbjct: 309 ---RQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV-- 363

Query: 385 GDEFQNRDTQLEVFCGSGFTYAISRH 410
               Q +     V CGS  T A S  
Sbjct: 364 -AALQGKKVN-RVACGSAHTLAWSTS 387
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.92
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.81
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.39
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.36
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 95.54
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.36
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.3
3jrp_A379 Fusion protein of protein transport protein SEC13 95.19
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 95.19
3jro_A 753 Fusion protein of protein transport protein SEC13 94.4
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.85
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 92.49
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 92.18
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 91.89
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 90.95
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 90.12
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 89.93
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 89.92
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 89.74
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 86.89
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 86.4
3jrp_A379 Fusion protein of protein transport protein SEC13 86.22
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 84.18
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 83.75
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 83.52
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 83.04
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 82.73
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 82.27
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 81.4
4g56_B357 MGC81050 protein; protein arginine methyltransfera 80.46
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 80.08
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.5e-75  Score=560.47  Aligned_cols=369  Identities=25%  Similarity=0.378  Sum_probs=325.0

Q ss_pred             chhhhhceeecEEEEEeCCCCCccccCCCCCCcCCeeeecCCCCCeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCc
Q 014875           24 IEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQ  103 (416)
Q Consensus        24 ~~~~~~~~~~g~v~~wG~n~~GqLG~g~~~~~~~p~~i~~~~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gq  103 (416)
                      .......+.+|+||+||+|.+||||.++..+...|+++..+...+|++|+||..|+++|++     +|+||+||.|.+||
T Consensus        10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~-----~G~v~~wG~n~~Gq   84 (389)
T 3kci_A           10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA-----DGKLYATGYGAGGR   84 (389)
T ss_dssp             -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEET-----TSCEEEEECCGGGT
T ss_pred             cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcC-----CCcEEEEECCCCCC
Confidence            3445778899999999999999999998888888999887777799999999999999999     99999999999999


Q ss_pred             cCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEE
Q 014875          104 LGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQI  183 (416)
Q Consensus       104 lG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i  183 (416)
                      ||.+.......|+++..+.....++++|+||.+|+++|+++|+||+||.|.+||||.++......|.++..+.+.+|++|
T Consensus        85 LG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~v  164 (389)
T 3kci_A           85 LGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDV  164 (389)
T ss_dssp             TSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred             CCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEE
Confidence            99999888999999998887556778999999999999999999999999999999999888889999999888899999


Q ss_pred             EeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecCC--CeEEEEeCCCcEEEeeC
Q 014875          184 ACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGR  261 (416)
Q Consensus       184 ~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~  261 (416)
                      +||.+|+++|++   +|+||+||.|.+||||.+.  ......|.++..+...+|++|+||.  .|+++|+++|+||+||.
T Consensus       165 a~G~~hs~alt~---~G~v~~wG~n~~GqLG~~~--~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~  239 (389)
T 3kci_A          165 AAGGAHSACVTA---AGDLYTWGKGRYGRLGHSD--SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD  239 (389)
T ss_dssp             EECSSEEEEEET---TSCEEEEECCGGGTTCSSS--CCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEEC
T ss_pred             EeCcCeEEEEeC---CCeEEEeCCCCCCCcCCCC--CcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeC
Confidence            999999999999   9999999999999999984  3456778999888888999999985  89999999999999999


Q ss_pred             CCCCCCCC------CCceecC--CCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccC
Q 014875          262 GFNSTSDV------NCPQSLP--SSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNL  333 (416)
Q Consensus       262 ~~~~~~~~------~~p~~~~--~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~  333 (416)
                      |.++|++.      ..|.+++  ...+|++|+||..|+++|+++|+||+||.|.+||||.+....     ...|.+++.+
T Consensus       240 n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-----~~~P~~v~~l  314 (389)
T 3kci_A          240 GDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH-----VRRPRQVQGL  314 (389)
T ss_dssp             CGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCC-----EEEEEECGGG
T ss_pred             CCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcc-----ccCCeEeccC
Confidence            99999885      3455553  355799999999999999999999999999999999987543     4457778888


Q ss_pred             CCCcEEEEecCCCeeEEEECCCCEEEEECCCCCCccCCCCCCccCceEEecCCcccCCCceEEEeecCCeEEEEccCC
Q 014875          334 DGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC  411 (416)
Q Consensus       334 ~~~~v~~i~~G~~h~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~v~~v~~G~~~t~~i~~~~  411 (416)
                      .+.+|++|+||.+|+++++++|+||+||+|.+||||.|+..+...|++|+....    .+|.+|+||.+||++|+++.
T Consensus       315 ~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~----~~v~~va~G~~ht~al~~~~  388 (389)
T 3kci_A          315 QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG----KKVNRVACGSAHTLAWSTSK  388 (389)
T ss_dssp             TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT----SCCCEEEEETTEEEEECC--
T ss_pred             CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCC----CCEEEEEecCCcEEEEecCC
Confidence            888999999999999999999999999999999999999999999999975532    37999999999999999864
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-35
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-17
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-15
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-09
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-06
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-11
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-05
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (328), Expect = 8e-35
 Identities = 79/396 (19%), Positives = 139/396 (35%), Gaps = 36/396 (9%)

Query: 35  KVWSWGAGTDGQLGTG-RLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKV 93
            V + G G  GQLG G  + +   P L+++     V     GG H + L+       G+V
Sbjct: 16  LVLTLGQGDVGQLGLGENVMERKKPALVSI--PEDVVQAEAGGMHTVCLSK-----SGQV 68

Query: 94  FSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDG 153
           +S+G    G LG    V+     P       +            +        L+     
Sbjct: 69  YSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 128

Query: 154 TFGQLGHGD----------YRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVY 203
             G +G  +           +     VKV+S  +  V   A G  ++L   +     +V 
Sbjct: 129 NNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVP 188

Query: 204 GFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGF 263
              + + G+ G+ +  +    + +       +           + A+S EGH+Y +G   
Sbjct: 189 ELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSN 248

Query: 264 NSTSDVN----------CPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSD 313
                                  S+ S+   + G +H + +  +G+   LG + +G L  
Sbjct: 249 YHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGL 308

Query: 314 PERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNT 373
            E        +     +S L  V    +A GA     VT++  +  WG G + QLG G  
Sbjct: 309 GEGAEEKSIPT----LISRLPAVS--SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD 362

Query: 374 CDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 409
            D   P  + +G + +NR   L V  G   T  + +
Sbjct: 363 EDAWSPVEM-MGKQLENR-VVLSVSSGGQHTVLLVK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.69
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.07
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 89.65
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 88.42
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 86.86
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 84.88
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-62  Score=475.74  Aligned_cols=370  Identities=24%  Similarity=0.334  Sum_probs=300.6

Q ss_pred             hhhhhceeecEEEEEeCCCCCccccCCCC-CCcCCeeeecCCCCCeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCc
Q 014875           25 EEEEEEQQVVKVWSWGAGTDGQLGTGRLH-DELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQ  103 (416)
Q Consensus        25 ~~~~~~~~~g~v~~wG~n~~GqLG~g~~~-~~~~p~~i~~~~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gq  103 (416)
                      .=....+++|+||+||.|.+||||+|+.. ++..|.++..+  .+|++|+||..|++||++     +|+||+||.|.+||
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~ia~G~~h~~al~~-----~G~vy~wG~n~~GQ   78 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSK-----SGQVYSFGCNDEGA   78 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEET-----TSCEEEEECCTTST
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCC--CCeEEEEeCCCEEEEEeC-----CCEEEEEeCCCCCC
Confidence            34467899999999999999999999654 56677777665  679999999999999999     99999999999999


Q ss_pred             cCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCCC-cccceEeeecCCCceEE
Q 014875          104 LGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRS-HSSPVKVSSFVNKNVHQ  182 (416)
Q Consensus       104 lG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~  182 (416)
                      ||++.......|.+......  .+|++|+||..|+++++++|+||+||.+..++++...... ...+..+......+|++
T Consensus        79 LG~g~~~~~~~~~~~~~~~~--~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (401)
T d1a12a_          79 LGRDTSVEGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVK  156 (401)
T ss_dssp             TCSCCCSTTGGGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEE
T ss_pred             CCcccccccccccccccccc--cceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeE
Confidence            99998877766666665555  6799999999999999999999999988766655443332 22333344444578999


Q ss_pred             EEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCc---------ceeecCeEecc-----cCCCCEEEEecCCCeEE
Q 014875          183 IACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRI---------RSVSLPQVTIG-----LHDIEIVGISANGDRSA  248 (416)
Q Consensus       183 i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~---------~~~~~p~~~~~-----~~~~~i~~i~~g~~~~~  248 (416)
                      |+||..|+++++.   +|++|+||.|.++|||......         .....|..+..     ....+|.+|+||..|++
T Consensus       157 i~~g~~~~~~~~~---~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~  233 (401)
T d1a12a_         157 VASGNDHLVMLTA---DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF  233 (401)
T ss_dssp             EEECSSEEEEEET---TSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEE
T ss_pred             EEecccceeeeec---CCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEE
Confidence            9999999999999   9999999999999999764211         11123333332     23457999999999999


Q ss_pred             EEeCCCcEEEeeCCCCCCCCCCCc------eec----CCCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCc
Q 014875          249 ALSAEGHLYTWGRGFNSTSDVNCP------QSL----PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVS  318 (416)
Q Consensus       249 ~lt~~G~vy~wG~~~~~~~~~~~p------~~~----~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~  318 (416)
                      +|+++|+||.||.+.+++++....      ..+    .....++.+++|..|+++++++|+||+||.|.+||||.++...
T Consensus       234 ~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~  313 (401)
T d1a12a_         234 AISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAE  313 (401)
T ss_dssp             EEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCC
T ss_pred             EEecCCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccc
Confidence            999999999999999999874321      111    1345799999999999999999999999999999999986543


Q ss_pred             ccCccccceeeeccCCCCcEEEEecCCCeeEEEECCCCEEEEECCCCCCccCCCCCCccCceEEecCCcccCCCceEEEe
Q 014875          319 STRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVF  398 (416)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~v~~v~  398 (416)
                          ....|..++.+.  +|++|+||.+|++||+++|+||+||+|.+||||+|++.++..|++|.....  ...+|.+|+
T Consensus       314 ----~~~~P~~i~~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~--~~~~v~~v~  385 (401)
T d1a12a_         314 ----EKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQL--ENRVVLSVS  385 (401)
T ss_dssp             ----CEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTT--TTEEEEEEE
T ss_pred             ----cccCCEEcCCCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCC--CCCEEEEEE
Confidence                233455665554  799999999999999999999999999999999999999999999875421  234799999


Q ss_pred             ecCCeEEEEccCCCCC
Q 014875          399 CGSGFTYAISRHCLPS  414 (416)
Q Consensus       399 ~G~~~t~~i~~~~~~~  414 (416)
                      ||.+||++|++|..++
T Consensus       386 ~G~~hs~~l~~d~~~~  401 (401)
T d1a12a_         386 SGGQHTVLLVKDKEQS  401 (401)
T ss_dssp             ECSSEEEEEEEECSCC
T ss_pred             EccceEEEEEECCccC
Confidence            9999999999987653
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure