Citrus Sinensis ID: 014962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK
Secondary Structure (PSIPRED)
ccccEEEEEEEEEccccccEEEEEccccEEEEEEEcccccccccccEEcccccccccccccccccccccccEEEEEcccEEEEEEccccccccccccccccccccEEEEEEEEccccccccEEEEEEccccccccccccEEEEEEEEcccccccccccccccEEcEEEEEEcccccEEEEEEEEccccEEEEcEEcccEEEEEEccEEEEEEEcccccccEEEEEEccccEEEEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEEcccccEEEEEEEEEccEEEEEEccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccccccEEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEccccccEEEEEccccEEEEEEEccccccccccEEEEccccccEEEEEEcccccccEEEEEEEEcccEEEEEEccccccccccccccccccccEEEEEEEccccccccccEEEcccccccccccccccHEEcccHHHccccccccccccccccccEcccccccEEEEEEEEccccccEEEccccccEEEEEEccEEEEEccccccccEEEEEEcccccEEEEEEEEcccEEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEEcccEEEEEcccccEEEEEccccccccccccccccccccEEcccHccHcccccEEEEcccccccccccccccccccEEEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccc
Coil and Loop (DISEMBL)
mvhnkrlnvrkfhlggtpkkvlYHSESRLLIVMRTElnndtcssdiccvdplsgsvlSSFKlelgetgksmeLVRVGHEQVLVVGtslssgpaimpsgeaestkGRLIVLCIEHmqnsdcgsmtfcskagsssqrtspFREIVGYATEqlsssslcsspddascdgikleETETWQLRLAYSTTWPGMVLAICPYLDRYFLAsagnafyvcgfpndnpqrVRRFAVGRTRFMIMLLTAHFTRIavgdcrdgilfYSYHEDARKLEQiycdpsqrlvaDCVLMDVDTAVvsdrkgsiavlscsdrlednaspecnltpncayhmGEIAVSIRKgsfiyklpaddalGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIhpltapllgndhsefrsrenpvrk
Flexible Loop (DISEMBL)
mvhnkrlnvrkfhlggtpkkvlyhSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEqlsssslcssPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLtapllgndhsefrsrenpvrk
Low Complexity Region (SEG)
MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQlsssslcsspddascdGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK
Disordered region (IsUnstruct)
********VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS*****************GRLIVLCIEHMQNSDCGSMTFC*************************************CDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLL****************
Disordered Region (DISOPRED)
**HNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTC**********************************GHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC***************PNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPV**
Disordered Region (DISEMBL)
MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFC**********SPFREIVGYATE***************CDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSE**********
Disordered Region (DISPRO)
***NKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL*************STKGRLIVLCIEHMQNSDCG***************SPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q9UTT2	1206	Pre-mRNA-splicing factor	yes	no	0.532	0.183	0.234	5e-09
Q4PGM6	1221	Pre-mRNA-splicing factor	N/A	no	0.421	0.143	0.269	2e-08
Q7RYR4	1209	Pre-mRNA-splicing factor	N/A	no	0.515	0.177	0.248	3e-08
Q921M3	1217	Splicing factor 3B subuni	yes	no	0.363	0.124	0.263	8e-08
Q15393	1217	Splicing factor 3B subuni	yes	no	0.363	0.124	0.263	8e-08
A0JN52	1217	Splicing factor 3B subuni	yes	no	0.363	0.124	0.263	8e-08
Q5RBI5	1217	Splicing factor 3B subuni	yes	no	0.363	0.124	0.263	8e-08
Q1LVE8	1217	Splicing factor 3B subuni	yes	no	0.366	0.124	0.229	3e-06
Q52E49	1216	Pre-mRNA-splicing factor	N/A	no	0.428	0.146	0.228	2e-05
Q54SA7	1256	Probable splicing factor	yes	no	0.373	0.123	0.251	7e-05

>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp12 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 39/260 (15%)

Query: 173  ETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFM 232
            E  +L L   T   G+ +A+ P+  R  LA  G    +      N + +R+  +      
Sbjct: 923  EGKKLELISHTEIDGIPMALTPFQGR-MLAGVGRFLRIYDL--GNKKMLRKGELSAVPLF 979

Query: 233  IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
            I  +T   +RI V D +  + F  Y  +   L     D   R     VL+D DT    D+
Sbjct: 980  ITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDK 1039

Query: 293  KGSIAVLSCSDRL-----EDNA-------SPECNLTPN-----CAYHMGEIAVSIRKGSF 335
             G+I +L C + +     E+N+        P  N TP+       +   +I  S++K   
Sbjct: 1040 FGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPTSLQKVQL 1099

Query: 336  IYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPL 394
            +                E ++  ++ + LLG++ +F P I+ E+    +  Q    +   
Sbjct: 1100 V----------------EGAREVLLWTGLLGTVGVFTPFINQEDVRFFQ--QLEFLLRKE 1141

Query: 395  TAPLLGNDHSEFRSRENPVR 414
              PL G DH  +RS   PV+
Sbjct: 1142 CPPLAGRDHLAYRSYYAPVK 1161

Involved in mRNA splicing and G2/M transition.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RSE1 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 233  IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
            ++ L A  +RI VGD ++ I+F SY     +L     D   + V  C ++D DT   +D+
Sbjct: 993  VVSLDAQGSRIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADK 1052

Query: 293  KGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASF 352
             G+I VL    RL+ N S   +  P     + E  V +   +    L A   +GD + S 
Sbjct: 1053 FGNIYVL----RLDGNTSRSVDEDPTGMTIVHEKPV-LMGAAHKASLVAHFFVGDIITSL 1107

Query: 353  ESS------QTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSE 405
              +      +  ++ + L GSI   +P +S E+ + L  +++ L        ++G DH  
Sbjct: 1108 HRTAMVAGGREVLLYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQE--NNSIVGRDHLA 1165

Query: 406  FRSRENPVR 414
            +RS   PV+
Sbjct: 1166 YRSSYAPVK 1174

Involved in pre-mRNA splicing and cell cycle control.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rse-1 PE=3 SV=2

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 19/233 (8%)

Query: 190  LAICPYLDRYFLASAGNAF--YVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD 247
            LA+ P+  R  LA  G     Y  G      Q +R+     T  +I+ L +   RI VGD
Sbjct: 942  LALIPFQGR-LLAGVGKTLRIYDLGLK----QLLRKAQADVTPTLIVSLQSQGNRIIVGD 996

Query: 248  CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLE- 306
             + GI +  Y  +  +L     D   R      ++D ++    D+ G+I ++ C +R+  
Sbjct: 997  LQQGITYVVYKAEGNRLIPFADDTLNRWTTCTTMVDYESVAGGDKFGNIYIVRCPERVSQ 1056

Query: 307  --DNASPECNLTPNCAY-HMGEIAVSIRKGSFIYKLPADDALGDCLASFE-SSQTTIIAS 362
              D    E +L     Y H     +S++   +   LP       C  S     Q  ++ S
Sbjct: 1057 ETDEPGSEIHLMHARNYLHGTPNRLSLQVHFYTQDLPT----SICKTSLVVGGQDVLLWS 1112

Query: 363  TLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
             L G++ +FIP +S E+ +  + ++  +       PL G DH  +R    PV+
Sbjct: 1113 GLQGTVGVFIPFVSREDVDFFQNLENHMRAE--DPPLAGRDHLIYRGYYTPVK 1163

Involved in pre-mRNA splicing and cell cycle control.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)

Query: 242  RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
            R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I    C
Sbjct: 999  RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054

Query: 302  SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
              RL  N + E +  P            N A         YH+GE  +S++K + I    
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110

Query: 341  ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
                             +++ +TL G I I +P +S E+++  + V+  L + HP   PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155

Query: 399  LGNDHSEFRSRENPVRK 415
             G DH  FRS   PV+ 
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Mus musculus (taxid: 10090)

>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)

Query: 242  RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
            R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I    C
Sbjct: 999  RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054

Query: 302  SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
              RL  N + E +  P            N A         YH+GE  +S++K + I    
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110

Query: 341  ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
                             +++ +TL G I I +P +S E+++  + V+  L + HP   PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155

Query: 399  LGNDHSEFRSRENPVRK 415
             G DH  FRS   PV+ 
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Homo sapiens (taxid: 9606)

>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)

Query: 242  RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
            R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I    C
Sbjct: 999  RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054

Query: 302  SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
              RL  N + E +  P            N A         YH+GE  +S++K + I    
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110

Query: 341  ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
                             +++ +TL G I I +P +S E+++  + V+  L + HP   PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155

Query: 399  LGNDHSEFRSRENPVRK 415
             G DH  FRS   PV+ 
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Bos taurus (taxid: 9913)

>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)

Query: 242  RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
            R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I    C
Sbjct: 999  RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054

Query: 302  SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
              RL  N + E +  P            N A         YH+GE  +S++K + I    
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALRDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110

Query: 341  ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
                             +++ +TL G I I +P +S E+++  + V+  L + HP   PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155

Query: 399  LGNDHSEFRSRENPVRK 415
             G DH  FRS   PV+ 
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Pongo abelii (taxid: 9601)

>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 44/196 (22%)

Query: 242  RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
            R+ V D ++ + +  Y  +  +L     D   R +    L+D DT   +D+ G+I    C
Sbjct: 999  RVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNI----C 1054

Query: 302  SDRLEDNASPECNLTPN---------------------CAYHMGEIAVSIRKGSFIYKLP 340
              RL  N S + +  P                        YH+GE  +S++K + I    
Sbjct: 1055 VVRLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLI---- 1110

Query: 341  ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLL 399
                             +++ +TL G I I +P +S E+++  + ++  + +     PL 
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLE--MHMRSEFPPLC 1156

Query: 400  GNDHSEFRSRENPVRK 415
            G DH  FRS   PV+ 
Sbjct: 1157 GRDHLSFRSYYFPVKN 1172

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Danio rerio (taxid: 7955)

>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 232  MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSD 291
            +I+ L    +RI VGD + G+++ +Y  +  +L     D   R      ++D D+   +D
Sbjct: 988  LIVSLNTQGSRIIVGDVQHGLIYVAYKSETNRLIPFADDTIARWTTCTTMVDYDSTAGAD 1047

Query: 292  RKGSIAVLSCSDRL---EDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDC 348
            + G++ +L C ++     D    E +L  +  Y  G    S R     +    D     C
Sbjct: 1048 KFGNLWILRCPEKASQESDEPGSEVHLVHSRDYLHG---TSNRLALMAHVYTQDIPTSIC 1104

Query: 349  LASF-ESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEF 406
              +     Q  ++     G+I + IP +S E+ +  ++++  L       PL G DH  +
Sbjct: 1105 KTNLVVGGQEVLLWGGFQGTIGVLIPFVSREDADFFQSLEQHLRSE--DPPLAGRDHLMY 1162

Query: 407  RSRENPVR 414
            R    PV+
Sbjct: 1163 RGCYVPVK 1170

Involved in pre-mRNA splicing and cell cycle control.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum GN=sf3b3 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 36/191 (18%)

Query: 242  RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS- 300
            R+ VGD ++ I F  Y      L     D + R +   V++D DT   +D+ G+I VL  
Sbjct: 1038 RLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRL 1097

Query: 301  ---CSDRLEDN--------ASPECNLTPNCAYHM-----GEIAVSIRKGSFIYKLPADDA 344
                SD +E++         S   N  P+   H+     G+   ++ K S +   P    
Sbjct: 1098 PLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFVGDTVTTLNKTSLVVGGPE--- 1154

Query: 345  LGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDH 403
                          I+ +T+ G+I   IP +S E+ +    ++  +    L  PL G DH
Sbjct: 1155 -------------VILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCL--PLCGRDH 1199

Query: 404  SEFRSRENPVR 414
              +RS   PV+
Sbjct: 1200 LAYRSYYFPVK 1210

Involved in pre-mRNA splicing. Probable subunit of a splicing factor complex and spliceosomes.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
297739782	1363	unnamed protein product [Vitis vinifera]	1.0	0.304	0.844	0.0
225441567	1387	PREDICTED: pre-mRNA-splicing factor rse1	0.990	0.296	0.819	0.0
449437538	1376	PREDICTED: pre-mRNA-splicing factor RSE1	0.995	0.300	0.831	0.0
255581562	1220	spliceosomal protein sap, putative [Rici	0.997	0.339	0.827	0.0
297829750	1384	predicted protein [Arabidopsis lyrata su	0.990	0.296	0.745	0.0
356570929	1258	PREDICTED: uncharacterized protein LOC10	0.992	0.327	0.769	0.0
356505471	1278	PREDICTED: uncharacterized protein LOC10	0.992	0.322	0.764	0.0
6671952	1331	hypothetical protein [Arabidopsis thalia	0.990	0.308	0.752	1e-179
42564075	1379	Cleavage and polyadenylation specificity	0.990	0.298	0.752	1e-179
30681985	1329	Cleavage and polyadenylation specificity	0.990	0.309	0.742	1e-178

>gi|297739782|emb|CBI29964.3| unnamed protein product [Vitis vinifera]

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/418 (84%), Positives = 388/418 (92%), Gaps = 3/418 (0%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KRLNV+KF+LGGTP+KVLYHSESRLL+VMRTEL+ DT SSDICCVDPLSGSVLSSF
Sbjct: 880  MVHSKRLNVQKFYLGGTPRKVLYHSESRLLLVMRTELSQDTYSSDICCVDPLSGSVLSSF 939

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KLELGETGKSMELVRV +EQVLV+GTSLSSGPA+MPSGEAESTKGRLIVLC+EHMQNSD 
Sbjct: 940  KLELGETGKSMELVRVVNEQVLVIGTSLSSGPAMMPSGEAESTKGRLIVLCLEHMQNSDS 999

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMTFCSKAGSSSQRTSPFREIVGYA EQLS SSLCSSPDD SCDG++LEE+E WQLRLA
Sbjct: 1000 GSMTFCSKAGSSSQRTSPFREIVGYAAEQLSGSSLCSSPDDTSCDGVRLEESEAWQLRLA 1059

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
            Y+ TWPGMVLAICPYLDRYFLASAGN+FYVCGFPNDNPQRVRRFAVGRTRFMIM LTAHF
Sbjct: 1060 YTATWPGMVLAICPYLDRYFLASAGNSFYVCGFPNDNPQRVRRFAVGRTRFMIMSLTAHF 1119

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRIAVGDCRDG++FYSYHED+RKLEQ+YCDP QRLVADC+LMDVDTAVVSDRKGSIAVLS
Sbjct: 1120 TRIAVGDCRDGVVFYSYHEDSRKLEQLYCDPEQRLVADCILMDVDTAVVSDRKGSIAVLS 1179

Query: 301  CSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLAS---FESSQT 357
            CS+ LEDNASPECNLT NC+Y+MGEIA+SI+KGSF YKLPADD L  C  S    + S+ 
Sbjct: 1180 CSNHLEDNASPECNLTLNCSYYMGEIAMSIKKGSFSYKLPADDVLKGCDGSNTIIDFSEN 1239

Query: 358  TIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK 415
            +I+A TLLGSI++ IPIS EE+ELLEAVQARLA+H LTAP+LGNDH+EFRSREN VRK
Sbjct: 1240 SIMAGTLLGSIIMLIPISREEHELLEAVQARLAVHQLTAPILGNDHNEFRSRENSVRK 1297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441567|ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-like [Vitis vinifera]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/427 (81%), Positives = 385/427 (90%), Gaps = 16/427 (3%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KRLNV+KF+LGGTP+KVLYHSESRLL+VMRTEL+ DT SSDICCVDPLSGSVLSSF
Sbjct: 894  MVHSKRLNVQKFYLGGTPRKVLYHSESRLLLVMRTELSQDTYSSDICCVDPLSGSVLSSF 953

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KLELGETGKSMELVRV +EQVLV+GTSLSSGPA+MPSGEAESTKGRLIVLC+EHMQNSD 
Sbjct: 954  KLELGETGKSMELVRVVNEQVLVIGTSLSSGPAMMPSGEAESTKGRLIVLCLEHMQNSDS 1013

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMTFCSKAGSSSQRTSPFREIVGYA EQLS SSLCSSPDD SCDG++LEE+E WQLRLA
Sbjct: 1014 GSMTFCSKAGSSSQRTSPFREIVGYAAEQLSGSSLCSSPDDTSCDGVRLEESEAWQLRLA 1073

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
            Y+ TWPGMVLAICPYLDRYFLASAGN+FYVCGFPNDNPQRVRRFAVGRTRFMIM LTAHF
Sbjct: 1074 YTATWPGMVLAICPYLDRYFLASAGNSFYVCGFPNDNPQRVRRFAVGRTRFMIMSLTAHF 1133

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRIAVGDCRDG++FYSYHED+RKLEQ+YCDP QRLVADC+LMDVDTAVVSDRKGSIAVLS
Sbjct: 1134 TRIAVGDCRDGVVFYSYHEDSRKLEQLYCDPEQRLVADCILMDVDTAVVSDRKGSIAVLS 1193

Query: 301  CSDRLE-------------DNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGD 347
            CS+ LE             DNASPECNLT NC+Y+MGEIA+SI+KGSF YKLPADD L  
Sbjct: 1194 CSNHLEELHGFKFLIISCPDNASPECNLTLNCSYYMGEIAMSIKKGSFSYKLPADDVLKG 1253

Query: 348  CLAS---FESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHS 404
            C  S    + S+ +I+A TLLGSI++ IPIS EE+ELLEAVQARLA+H LTAP+LGNDH+
Sbjct: 1254 CDGSNTIIDFSENSIMAGTLLGSIIMLIPISREEHELLEAVQARLAVHQLTAPILGNDHN 1313

Query: 405  EFRSREN 411
            EFRSREN
Sbjct: 1314 EFRSREN 1320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437538|ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-like [Cucumis sativus]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/416 (83%), Positives = 379/416 (91%), Gaps = 3/416 (0%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH KRLNV+KFHLGGTP+KVLYHSES+LL+VMRT+L NDT SSDICCVDPLSGS+LSS 
Sbjct: 897  MVHTKRLNVQKFHLGGTPRKVLYHSESKLLLVMRTQLINDTSSSDICCVDPLSGSILSSH 956

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KLE+GETGKSMELVR G+EQVLVVGTSLSSGPAIM SGEAESTKGRLIVLC+EH+QNSD 
Sbjct: 957  KLEIGETGKSMELVRNGNEQVLVVGTSLSSGPAIMASGEAESTKGRLIVLCLEHVQNSDT 1016

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMTFCSKAG SS + SPFREIVGYATEQLSSSSLCSSPDDAS DGIKLEETE WQLR+ 
Sbjct: 1017 GSMTFCSKAGLSSLQASPFREIVGYATEQLSSSSLCSSPDDASSDGIKLEETEAWQLRVV 1076

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
            YST+ PGMVLAICPYLDRYFLASAGNAFYVCGFPND+ QRV+RFAVGRTRFMI  LTAH 
Sbjct: 1077 YSTSLPGMVLAICPYLDRYFLASAGNAFYVCGFPNDSFQRVKRFAVGRTRFMITSLTAHV 1136

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
             RIAVGDCRDGILF+SY EDA+KLEQIY DPSQRLVADC L+DVDTAVVSDRKGSIA+LS
Sbjct: 1137 NRIAVGDCRDGILFFSYQEDAKKLEQIYSDPSQRLVADCTLLDVDTAVVSDRKGSIAILS 1196

Query: 301  CSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCL---ASFESSQT 357
            CSDRLEDNASPECNLT NCAY+MGEIA+++RKGSF YKLPADD L  C    + F+SS  
Sbjct: 1197 CSDRLEDNASPECNLTLNCAYYMGEIAMTLRKGSFSYKLPADDLLRGCAVPGSDFDSSHN 1256

Query: 358  TIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPV 413
            TIIASTLLGSIVIF P+S +EYELLEAVQA+LA+HPLT+P+LGNDH E+RSRENP+
Sbjct: 1257 TIIASTLLGSIVIFTPLSRDEYELLEAVQAKLAVHPLTSPILGNDHYEYRSRENPI 1312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581562|ref|XP_002531586.1| spliceosomal protein sap, putative [Ricinus communis] gi|223528782|gb|EEF30789.1| spliceosomal protein sap, putative [Ricinus communis]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/418 (82%), Positives = 378/418 (90%), Gaps = 4/418 (0%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KRLNV+KFHLGGTP+KVLYHSESRLL+VMRTEL+NDTCSSDICCVDPLSGSV+SSF
Sbjct: 798  MVHSKRLNVQKFHLGGTPRKVLYHSESRLLLVMRTELSNDTCSSDICCVDPLSGSVVSSF 857

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KLE GETGKSMELVRVG EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLC+EH+Q+SD 
Sbjct: 858  KLEHGETGKSMELVRVGTEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCLEHLQSSDS 917

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMTFCSKAGSSSQRTSPF E+VGY  EQLSSSSL  S  D SCDG+KLEE+E WQLRLA
Sbjct: 918  GSMTFCSKAGSSSQRTSPFCEVVGYTAEQLSSSSL-CSSPDDSCDGVKLEESEAWQLRLA 976

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
            Y+T WPGM L ICPYLDRYFLASAG+AFYVCGFPNDNPQRVR+FA+ RTRF I+ LTAHF
Sbjct: 977  YATKWPGMALTICPYLDRYFLASAGSAFYVCGFPNDNPQRVRKFAIARTRFTIISLTAHF 1036

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRIAVGDCRDGILFYSYHED RKLEQ+YCDPSQRLVADC+L+DVDTAVVSDRKGSIAVLS
Sbjct: 1037 TRIAVGDCRDGILFYSYHEDTRKLEQVYCDPSQRLVADCILLDVDTAVVSDRKGSIAVLS 1096

Query: 301  CSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA---SFESSQT 357
            CS   E NASPECNLT  CAY+MGEIA+SIRKGSF Y+LPADD L    A   +  +S  
Sbjct: 1097 CSGDSERNASPECNLTLTCAYYMGEIAMSIRKGSFSYRLPADDMLMGYDAVTPNNYASHN 1156

Query: 358  TIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK 415
            TI+ASTLLGSI+IFIP++ EE+ELLEAVQARL +HPLTAP+LGNDHSEFRSRENPVRK
Sbjct: 1157 TIMASTLLGSIIIFIPLTREEHELLEAVQARLVVHPLTAPILGNDHSEFRSRENPVRK 1214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829750|ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328597|gb|EFH59016.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/428 (74%), Positives = 362/428 (84%), Gaps = 17/428 (3%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KR N +KFHLGGTP+KV+YHSES+LLIVMRT+L  DTC+SDICCVDPLSGSVLSS+
Sbjct: 892  MVHSKRRNAQKFHLGGTPRKVIYHSESKLLIVMRTDLY-DTCTSDICCVDPLSGSVLSSY 950

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KL+ GETGKSMELVRVG+E VLVVGTSLSSGPAI+PSGEAESTKGRLI+LC+EH QNSD 
Sbjct: 951  KLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRLIILCLEHTQNSDS 1010

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMT CSKAGSSSQRTSPFR++VGY TEQLSSSS CSSPDD S DGIK +E ETWQLRLA
Sbjct: 1011 GSMTICSKAGSSSQRTSPFRDVVGYTTEQLSSSSHCSSPDDNSYDGIKFDEAETWQLRLA 1070

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
             +TTWPGMVLAICPYLD YFLASAGNAFYVCGFPND+P+R++RFAVGRTRFMI  L  +F
Sbjct: 1071 SATTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYF 1130

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRI VGDCRDG+LFYSYHE+++KL QIYCDP+QRLVADC LMD ++  VSDRKGSIA+LS
Sbjct: 1131 TRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILS 1190

Query: 301  CSDRLE--------------DNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALG 346
            C D  E              + +SPE NL  NCAY+MGEIA++I+KG  IYKLPADD L 
Sbjct: 1191 CQDHSEFGTKHLAFSPRDDPEYSSPESNLNLNCAYYMGEIAMAIKKGCNIYKLPADDVLR 1250

Query: 347  D--CLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHS 404
                  S +++  TIIA TLLGSI +F PISSEEYELLEAVQA+L IHPLTAP+LGNDH+
Sbjct: 1251 SYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEEYELLEAVQAKLGIHPLTAPVLGNDHN 1310

Query: 405  EFRSRENP 412
            EFR RENP
Sbjct: 1311 EFRGRENP 1318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570929|ref|XP_003553635.1| PREDICTED: uncharacterized protein LOC100799711 [Glycine max]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/416 (76%), Positives = 356/416 (85%), Gaps = 4/416 (0%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            M H KRLNV+KFHL GTP+KVLYH ES++L+VMRTELN   C SDICCVD LSGSVLSSF
Sbjct: 781  MGHGKRLNVQKFHLEGTPRKVLYHDESKMLLVMRTELNCGPCLSDICCVDSLSGSVLSSF 840

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            +LELGETGKSMELVRVG EQVLVVGTSLSSGP  MP+GEAES KGRL+VLC++H+QNSD 
Sbjct: 841  RLELGETGKSMELVRVGSEQVLVVGTSLSSGPHTMPTGEAESCKGRLLVLCLDHVQNSDS 900

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMTFCSKAGSSSQ+TSPF EIV YA E LSSSSL SSPDD S DGIKL E E WQ RLA
Sbjct: 901  GSMTFCSKAGSSSQKTSPFHEIVTYAPELLSSSSLGSSPDDNSSDGIKLHENEVWQFRLA 960

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
            Y+T WPG+VL ICPYLDRYFLA+AGNAFYVCGFPNDNPQRVRR+A+GRTR+MI  LTAH 
Sbjct: 961  YATKWPGVVLKICPYLDRYFLATAGNAFYVCGFPNDNPQRVRRYAMGRTRYMITSLTAHL 1020

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRIAVGDCRDGIL YSYHE+A+KLE +Y DPSQR+VADC+LMD DTAVVSDRKGSIAVL 
Sbjct: 1021 TRIAVGDCRDGILLYSYHEEAKKLELLYNDPSQRIVADCILMDADTAVVSDRKGSIAVL- 1079

Query: 301  CSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDAL---GDCLASFESSQT 357
            CSD LEDNA  +CN+T +CAY M EIA+SI+KGS+ Y+LPADD L        + +S Q 
Sbjct: 1080 CSDHLEDNAGAQCNMTLSCAYFMAEIAMSIKKGSYSYRLPADDVLEGGNGPKTNVDSLQN 1139

Query: 358  TIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPV 413
            TIIASTLLGSI+IFIP+S EEYELLE VQARL +H LTAP+LGNDH EFRSREN V
Sbjct: 1140 TIIASTLLGSIMIFIPLSREEYELLEVVQARLVVHHLTAPVLGNDHHEFRSRENRV 1195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505471|ref|XP_003521514.1| PREDICTED: uncharacterized protein LOC100806799 [Glycine max]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/416 (76%), Positives = 360/416 (86%), Gaps = 4/416 (0%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KRLN++KFHL GTP+KVLYH ES++L+VMRTELN  TC SDIC +DPLSGSVLSSF
Sbjct: 787  MVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICIMDPLSGSVLSSF 846

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            +LELGETGKSMELVRVG EQVLVVGTSLSSGP  M +GEAES KGRL+VLC++H+QNSD 
Sbjct: 847  RLELGETGKSMELVRVGSEQVLVVGTSLSSGPHTMATGEAESCKGRLLVLCLDHVQNSDS 906

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GS+TFCSKAGSSSQ+TSPFREIV YA EQLSSSSL SSPDD S DGIKL+E E WQ RL 
Sbjct: 907  GSVTFCSKAGSSSQKTSPFREIVTYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLT 966

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
            ++T WPG+VL ICPYLDRYFLA+AGNAFYVCGFPNDNPQRVRR+A+GR RFMI  LTAHF
Sbjct: 967  FATKWPGVVLKICPYLDRYFLATAGNAFYVCGFPNDNPQRVRRYAMGRARFMITSLTAHF 1026

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRIAVGDCRDGIL YSYHE+A+KLE +Y DPS RLVADC+LMD DTAVVSDRKGSIAVL 
Sbjct: 1027 TRIAVGDCRDGILLYSYHEEAKKLELLYNDPSLRLVADCILMDADTAVVSDRKGSIAVL- 1085

Query: 301  CSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDAL---GDCLASFESSQT 357
            CSD LEDNA  +CN+  +CAY M EIA+SI+KGS+ Y+LPADD L        + +S Q 
Sbjct: 1086 CSDHLEDNAGAQCNMALSCAYFMAEIAMSIKKGSYSYRLPADDVLQGGNGPKTNVDSLQN 1145

Query: 358  TIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPV 413
            TIIA+TLLGSI+IFIP+S EEYELLEAVQARL +H LTAP+LGNDH+EFRSREN V
Sbjct: 1146 TIIATTLLGSIMIFIPLSREEYELLEAVQARLVVHHLTAPVLGNDHNEFRSRENRV 1201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6671952|gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thaliana] gi|10998135|dbj|BAB03106.1| unnamed protein product [Arabidopsis thaliana]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/420 (75%), Positives = 359/420 (85%), Gaps = 9/420 (2%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KR N +KF LGGTP+KV+YHSES+LLIVMRT+L  DTC+SDICCVDPLSGSVLSS+
Sbjct: 847  MVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLY-DTCTSDICCVDPLSGSVLSSY 905

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KL+ GETGKSMELVRVG+E VLVVGTSLSSGPAI+PSGEAESTKGR+I+LC+EH QNSD 
Sbjct: 906  KLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRVIILCLEHTQNSDS 965

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMT CSKA SSSQRTSPF ++VGY TE LSSSSLCSSPDD S DGIKL+E ETWQLRLA
Sbjct: 966  GSMTICSKACSSSQRTSPFHDVVGYTTENLSSSSLCSSPDDYSYDGIKLDEAETWQLRLA 1025

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
             STTWPGMVLAICPYLD YFLASAGNAFYVCGFPND+P+R++RFAVGRTRFMI  L  +F
Sbjct: 1026 SSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYF 1085

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRI VGDCRDG+LFYSYHE+++KL QIYCDP+QRLVADC LMD ++  VSDRKGSIA+LS
Sbjct: 1086 TRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILS 1145

Query: 301  CSDRLE------DNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGD--CLASF 352
            C D  +      + +SPE NL  NCAY+MGEIA+SI+KG  IYKLPADD L       S 
Sbjct: 1146 CKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSI 1205

Query: 353  ESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412
            +++  TIIA TLLGSI +F PISSEEYELLE VQA+L IHPLTAP+LGNDH+EFR RENP
Sbjct: 1206 DTADDTIIAGTLLGSIFVFAPISSEEYELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENP 1265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42564075|ref|NP_187802.2| Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana] gi|29824376|gb|AAP04148.1| unknown protein [Arabidopsis thaliana] gi|110739103|dbj|BAF01468.1| hypothetical protein [Arabidopsis thaliana] gi|332641608|gb|AEE75129.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/420 (75%), Positives = 359/420 (85%), Gaps = 9/420 (2%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KR N +KF LGGTP+KV+YHSES+LLIVMRT+L  DTC+SDICCVDPLSGSVLSS+
Sbjct: 895  MVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLY-DTCTSDICCVDPLSGSVLSSY 953

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KL+ GETGKSMELVRVG+E VLVVGTSLSSGPAI+PSGEAESTKGR+I+LC+EH QNSD 
Sbjct: 954  KLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRVIILCLEHTQNSDS 1013

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMT CSKA SSSQRTSPF ++VGY TE LSSSSLCSSPDD S DGIKL+E ETWQLRLA
Sbjct: 1014 GSMTICSKACSSSQRTSPFHDVVGYTTENLSSSSLCSSPDDYSYDGIKLDEAETWQLRLA 1073

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
             STTWPGMVLAICPYLD YFLASAGNAFYVCGFPND+P+R++RFAVGRTRFMI  L  +F
Sbjct: 1074 SSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYF 1133

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRI VGDCRDG+LFYSYHE+++KL QIYCDP+QRLVADC LMD ++  VSDRKGSIA+LS
Sbjct: 1134 TRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILS 1193

Query: 301  CSDRLE------DNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGD--CLASF 352
            C D  +      + +SPE NL  NCAY+MGEIA+SI+KG  IYKLPADD L       S 
Sbjct: 1194 CKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSI 1253

Query: 353  ESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412
            +++  TIIA TLLGSI +F PISSEEYELLE VQA+L IHPLTAP+LGNDH+EFR RENP
Sbjct: 1254 DTADDTIIAGTLLGSIFVFAPISSEEYELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENP 1313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681985|ref|NP_850565.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana] gi|332641609|gb|AEE75130.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 318/428 (74%), Positives = 360/428 (84%), Gaps = 17/428 (3%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            MVH+KR N +KF LGGTP+KV+YHSES+LLIVMRT+L  DTC+SDICCVDPLSGSVLSS+
Sbjct: 837  MVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLY-DTCTSDICCVDPLSGSVLSSY 895

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
            KL+ GETGKSMELVRVG+E VLVVGTSLSSGPAI+PSGEAESTKGR+I+LC+EH QNSD 
Sbjct: 896  KLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRVIILCLEHTQNSDS 955

Query: 121  GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180
            GSMT CSKA SSSQRTSPF ++VGY TE LSSSSLCSSPDD S DGIKL+E ETWQLRLA
Sbjct: 956  GSMTICSKACSSSQRTSPFHDVVGYTTENLSSSSLCSSPDDYSYDGIKLDEAETWQLRLA 1015

Query: 181  YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
             STTWPGMVLAICPYLD YFLASAGNAFYVCGFPND+P+R++RFAVGRTRFMI  L  +F
Sbjct: 1016 SSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYF 1075

Query: 241  TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
            TRI VGDCRDG+LFYSYHE+++KL QIYCDP+QRLVADC LMD ++  VSDRKGSIA+LS
Sbjct: 1076 TRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILS 1135

Query: 301  CSDRLE-----------DN---ASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALG 346
            C D  +           DN   +SPE NL  NCAY+MGEIA+SI+KG  IYKLPADD L 
Sbjct: 1136 CKDHSDFGMKHLVKIPHDNPEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLR 1195

Query: 347  D--CLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHS 404
                  S +++  TIIA TLLGSI +F PISSEEYELLE VQA+L IHPLTAP+LGNDH+
Sbjct: 1196 SYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEEYELLEGVQAKLGIHPLTAPVLGNDHN 1255

Query: 405  EFRSRENP 412
            EFR RENP
Sbjct: 1256 EFRGRENP 1263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2081576	1379	AT3G11960 [Arabidopsis thalian	0.990	0.298	0.721	6.5e-161
UNIPROTKB|F1NZF7	504	SF3B3 "Uncharacterized protein	0.4	0.329	0.266	1.8e-07
POMBASE|SPAPJ698.03c	1206	prp12 "U2 snRNP-associated pro	0.556	0.191	0.237	7e-07
RGD|1311636	902	Sf3b3 "splicing factor 3b, sub	0.4	0.184	0.266	1.4e-06
UNIPROTKB|E9PT66	920	Sf3b3 "Protein Sf3b3" [Rattus	0.4	0.180	0.266	1.5e-06
UNIPROTKB|F1P529	1228	SF3B3 "Uncharacterized protein	0.4	0.135	0.266	1.7e-06
DICTYBASE|DDB_G0282569	1256	sf3b3 "splicing factor 3B subu	0.4	0.132	0.25	1.8e-06
UNIPROTKB|A0JN52	1217	SF3B3 "Splicing factor 3B subu	0.4	0.136	0.266	2.8e-06
UNIPROTKB|E2RR33	1217	SF3B3 "Uncharacterized protein	0.4	0.136	0.266	2.8e-06
UNIPROTKB|Q15393	1217	SF3B3 "Splicing factor 3B subu	0.4	0.136	0.266	2.8e-06

TAIR|locus:2081576 AT3G11960 [Arabidopsis thaliana (taxid:3702)]

 Score = 1567 (556.7 bits), Expect = 6.5e-161, P = 6.5e-161
 Identities = 303/420 (72%), Positives = 347/420 (82%)

Query:     1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
             MVH+KR N +KF LGGTP+KV+YHSES+LLIVMRT+L  DTC+SDICCVDPLSGSVLSS+
Sbjct:   895 MVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLY-DTCTSDICCVDPLSGSVLSSY 953

Query:    61 KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
             KL+ GETGKSMELVRVG+E VLVVGTSLSSGPAI+PSGEAESTKGR+I+LC+EH QNSD 
Sbjct:   954 KLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRVIILCLEHTQNSDS 1013

Query:   121 GSMTFCSKAGSSSQRTSPFREIVGYATEQXXXXXXXXXXXXXXXXGIKLEETETWQLRLA 180
             GSMT CSKA SSSQRTSPF ++VGY TE                 GIKL+E ETWQLRLA
Sbjct:  1014 GSMTICSKACSSSQRTSPFHDVVGYTTENLSSSSLCSSPDDYSYDGIKLDEAETWQLRLA 1073

Query:   181 YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
              STTWPGMVLAICPYLD YFLASAGNAFYVCGFPND+P+R++RFAVGRTRFMI  L  +F
Sbjct:  1074 SSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYF 1133

Query:   241 TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
             TRI VGDCRDG+LFYSYHE+++KL QIYCDP+QRLVADC LMD ++  VSDRKGSIA+LS
Sbjct:  1134 TRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILS 1193

Query:   301 CSDRLE------DNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDC-LA-SF 352
             C D  +      + +SPE NL  NCAY+MGEIA+SI+KG  IYKLPADD L    L+ S 
Sbjct:  1194 CKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSI 1253

Query:   353 ESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412
             +++  TIIA TLLGSI +F PISSEEYELLE VQA+L IHPLTAP+LGNDH+EFR RENP
Sbjct:  1254 DTADDTIIAGTLLGSIFVFAPISSEEYELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENP 1313

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

UNIPROTKB|F1NZF7 SF3B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 48/180 (26%), Positives = 82/180 (45%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I V+  
Sbjct:   286 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVV-- 343

Query:   302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
               RL  N + E +  P  N A +  G +  + +K   I      + +     +       
Sbjct:   344 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 401

Query:   357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
              +++ +TL G I I +P +S E+++  + V+  L + HP   PL G DH  FRS   PV+
Sbjct:   402 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 458

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPAPJ698.03c prp12 "U2 snRNP-associated protein Sap130 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 148 (57.2 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
 Identities = 58/244 (23%), Positives = 102/244 (41%)

Query:   176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIML 235
             +L L   T   G+ +A+ P+  R  LA  G    +  +   N + +R+  +      I  
Sbjct:   926 KLELISHTEIDGIPMALTPFQGR-MLAGVGRFLRI--YDLGNKKMLRKGELSAVPLFITH 982

Query:   236 LTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGS 295
             +T   +RI V D +  + F  Y  +   L     D   R     VL+D DT    D+ G+
Sbjct:   983 ITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGN 1042

Query:   296 IAVLSCSD---RLEDNASPECNLTPNCAY-HMGEIAVSIRKGSFIYKLPADDALGDCLAS 351
             I +L C +   +L D  + E  L     + +     + +    F   +P   +L   +  
Sbjct:  1043 IWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPT--SLQK-VQL 1099

Query:   352 FESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRE 410
              E ++  ++ + LLG++ +F P I+ E+    +  Q    +     PL G DH  +RS  
Sbjct:  1100 VEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQ--QLEFLLRKECPPLAGRDHLAYRSYY 1157

Query:   411 NPVR 414
              PV+
Sbjct:  1158 APVK 1161

GO:0000245 "spliceosomal complex assembly" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005686 "U2 snRNP" evidence=ISS

GO:0030620 "U2 snRNA binding" evidence=ISS

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS

RGD|1311636 Sf3b3 "splicing factor 3b, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 48/180 (26%), Positives = 82/180 (45%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I V+  
Sbjct:   684 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 741

Query:   302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
               RL  N + E +  P  N A +  G +  + +K   I      + +     +       
Sbjct:   742 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 799

Query:   357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
              +++ +TL G I I +P +S E+++  + V+  L + HP   PL G DH  FRS   PV+
Sbjct:   800 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 856

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|E9PT66 Sf3b3 "Protein Sf3b3" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 48/180 (26%), Positives = 82/180 (45%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I V+  
Sbjct:   702 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 759

Query:   302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
               RL  N + E +  P  N A +  G +  + +K   I      + +     +       
Sbjct:   760 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 817

Query:   357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
              +++ +TL G I I +P +S E+++  + V+  L + HP   PL G DH  FRS   PV+
Sbjct:   818 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 874

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P529 SF3B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 48/180 (26%), Positives = 82/180 (45%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I V+  
Sbjct:  1010 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVV-- 1067

Query:   302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
               RL  N + E +  P  N A +  G +  + +K   I      + +     +       
Sbjct:  1068 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1125

Query:   357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
              +++ +TL G I I +P +S E+++  + V+  L + HP   PL G DH  FRS   PV+
Sbjct:  1126 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1182

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

DICTYBASE|DDB_G0282569 sf3b3 "splicing factor 3B subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 120 (47.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 45/180 (25%), Positives = 77/180 (42%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ VGD ++ I F  Y      L     D + R +   V++D DT   +D+ G+I VL  
Sbjct:  1038 RLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRL 1097

Query:   302 SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTT--- 358
                + D    +   T    +  G +  +  K   I    A+  +GD + +   +      
Sbjct:  1098 PLLISDEVEEDPTGT-KLKFESGTLNGAPHKLDHI----ANFFVGDTVTTLNKTSLVVGG 1152

Query:   359 ---IIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
                I+ +T+ G+I   IP +S E+ +    ++  +    L  PL G DH  +RS   PV+
Sbjct:  1153 PEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCL--PLCGRDHLAYRSYYFPVK 1210

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA;ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|A0JN52 SF3B3 "Splicing factor 3B subunit 3" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 48/180 (26%), Positives = 82/180 (45%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I V+  
Sbjct:   999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 1056

Query:   302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
               RL  N + E +  P  N A +  G +  + +K   I      + +     +       
Sbjct:  1057 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1114

Query:   357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
              +++ +TL G I I +P +S E+++  + V+  L + HP   PL G DH  FRS   PV+
Sbjct:  1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1171

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RR33 SF3B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 48/180 (26%), Positives = 82/180 (45%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I V+  
Sbjct:   999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 1056

Query:   302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
               RL  N + E +  P  N A +  G +  + +K   I      + +     +       
Sbjct:  1057 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1114

Query:   357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
              +++ +TL G I I +P +S E+++  + V+  L + HP   PL G DH  FRS   PV+
Sbjct:  1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1171

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15393 SF3B3 "Splicing factor 3B subunit 3" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 48/180 (26%), Positives = 82/180 (45%)

Query:   242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
             R+ V D ++  ++  Y  +  +L     D   R V    L+D DT   +D+ G+I V+  
Sbjct:   999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 1056

Query:   302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
               RL  N + E +  P  N A +  G +  + +K   I      + +     +       
Sbjct:  1057 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1114

Query:   357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
              +++ +TL G I I +P +S E+++  + V+  L + HP   PL G DH  FRS   PV+
Sbjct:  1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1171

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025448001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1363 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
pfam03178	318	pfam03178, CPSF_A, CPSF A subunit region	1e-20

>gnl|CDD|217409 pfam03178, CPSF_A, CPSF A subunit region

 Score = 91.9 bits (229), Expect = 1e-20
 Identities = 67/241 (27%), Positives = 101/241 (41%), Gaps = 16/241 (6%)

Query: 170 EETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRT 229
           E     +L+L + T   G V A+C +  R  LA  G    V     D            T
Sbjct: 70  EPETNRKLKLVHKTEVKGAVTALCEFQGR-LLAGQGQKLRVYDLGKDKLLPKAFLDTPIT 128

Query: 230 RFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR-LVADCVLMDVDTAV 288
              ++ L     RI VGD    + F  Y E+  +L     D   R + A   L+D DT +
Sbjct: 129 Y--VVSLKVFGNRIIVGDLMKSVTFLGYDEEPYRLILFARDTQPRWVTAAEFLVDYDTIL 186

Query: 289 VSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDC 348
            +D+ G++ VL       ++   +  L     +H+G+I  S +KGS + K    ++    
Sbjct: 187 GADKFGNLHVLRYDPEAPESLDGDPRLLHRAEFHLGDIVTSFQKGSLVPKTGGAES---- 242

Query: 349 LASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFR 407
                +S   I+  TL GSI + +P IS EEY  L+ +Q +L        L G D   FR
Sbjct: 243 -----TSSPQILYGTLDGSIGLLVPFISEEEYRRLQHLQQQLRDE--LPHLCGLDPRAFR 295

Query: 408 S 408
           S
Sbjct: 296 S 296

This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs. The function of the aligned region is unknown but may be involved in RNA/DNA binding. Length = 318

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	100.0
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	100.0
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	100.0
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	100.0
COG5161	1319	SFT1 Pre-mRNA cleavage and polyadenylation specifi	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.64
PRK11028	330	6-phosphogluconolactonase; Provisional	97.15
PLN00181	793	protein SPA1-RELATED; Provisional	96.99
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	96.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	96.73
KOG1539	910	consensus WD repeat protein [General function pred	96.69
PRK11028	330	6-phosphogluconolactonase; Provisional	96.49
KOG1273	405	consensus WD40 repeat protein [General function pr	96.13
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.97
PTZ00420	568	coronin; Provisional	95.9
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.7
KOG0282	503	consensus mRNA splicing factor [Function unknown]	95.62
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.58
KOG2106	626	consensus Uncharacterized conserved protein, conta	95.44
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	95.33
PLN00181	793	protein SPA1-RELATED; Provisional	95.29
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	95.25
KOG0289	506	consensus mRNA splicing factor [General function p	94.75
KOG2048	691	consensus WD40 repeat protein [General function pr	94.7
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	94.36
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	93.87
KOG0646	476	consensus WD40 repeat protein [General function pr	93.75
KOG0289	506	consensus mRNA splicing factor [General function p	93.4
KOG0283	712	consensus WD40 repeat-containing protein [Function	93.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.3
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	93.15
KOG1274	933	consensus WD40 repeat protein [General function pr	93.11
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	93.02
KOG0772	641	consensus Uncharacterized conserved protein, conta	92.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.89
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.84
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.81
KOG0296	399	consensus Angio-associated migratory cell protein	92.7
KOG0288	459	consensus WD40 repeat protein TipD [General functi	92.48
KOG1273	405	consensus WD40 repeat protein [General function pr	92.36
KOG0315	311	consensus G-protein beta subunit-like protein (con	92.35
KOG0646	476	consensus WD40 repeat protein [General function pr	92.17
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.17
KOG2048	691	consensus WD40 repeat protein [General function pr	91.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	91.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	91.7
PTZ00420	568	coronin; Provisional	91.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	91.44
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	91.42
KOG1274	933	consensus WD40 repeat protein [General function pr	91.42
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.24
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	91.12
PHA03098	534	kelch-like protein; Provisional	90.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	90.37
KOG2110	391	consensus Uncharacterized conserved protein, conta	90.19
KOG0282	503	consensus mRNA splicing factor [Function unknown]	90.19
KOG0266	456	consensus WD40 repeat-containing protein [General	89.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	89.92
PHA02713	557	hypothetical protein; Provisional	89.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	89.72
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	89.61
KOG1407	313	consensus WD40 repeat protein [Function unknown]	89.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	89.37
KOG0278	334	consensus Serine/threonine kinase receptor-associa	89.29
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	88.96
PTZ00421	493	coronin; Provisional	88.77
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.3
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	88.22
KOG1539	910	consensus WD repeat protein [General function pred	87.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	87.52
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	87.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	87.33
KOG0263	707	consensus Transcription initiation factor TFIID, s	87.06
KOG0316	307	consensus Conserved WD40 repeat-containing protein	86.76
KOG2096	420	consensus WD40 repeat protein [General function pr	86.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	86.09
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	85.54
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.38
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	84.86
KOG0645	312	consensus WD40 repeat protein [General function pr	84.79
KOG0318	603	consensus WD40 repeat stress protein/actin interac	84.68
KOG0310	487	consensus Conserved WD40 repeat-containing protein	84.67
KOG0286	343	consensus G-protein beta subunit [General function	84.41
KOG3621	726	consensus WD40 repeat-containing protein [General	84.29
KOG0308	735	consensus Conserved WD40 repeat-containing protein	84.19
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	84.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	84.05
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.23
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	83.15
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	83.07
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	82.42
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	82.41
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	82.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	82.01
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	81.95
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	81.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	81.89
KOG3881	412	consensus Uncharacterized conserved protein [Funct	81.76
KOG2321	703	consensus WD40 repeat protein [General function pr	81.58
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	81.56
PHA02713	557	hypothetical protein; Provisional	81.43
KOG2055	514	consensus WD40 repeat protein [General function pr	80.52

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=100.00  E-value=3.6e-63  Score=524.08  Aligned_cols=331  Identities=23%  Similarity=0.340  Sum_probs=306.7

Q ss_pred             CCcCCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC-------CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEE
Q 014962            1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN-------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMEL   73 (415)
Q Consensus         1 ~~~~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~-------~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~   73 (415)
                      |+++||+|+|+|||+++||||+|++.+.+|+|.+.+...       +.|.++++++|++||++++.++|+++|.+.|+.+
T Consensus       700 id~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s  779 (1096)
T KOG1897|consen  700 IDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS  779 (1096)
T ss_pred             ecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence            689999999999999999999999998999999865432       4678999999999999999999999999999999


Q ss_pred             EEECCe--eEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccc
Q 014962           74 VRVGHE--QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLS  151 (415)
Q Consensus        74 ~~l~~~--~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  151 (415)
                      ++|.++  .|++|||++.+      |+|++|..|||++|++.+                                     
T Consensus       780 ~~~~~d~~t~~vVGT~~v~------Pde~ep~~GRIivfe~~e-------------------------------------  816 (1096)
T KOG1897|consen  780 CKFTDDPNTYYVVGTGLVY------PDENEPVNGRIIVFEFEE-------------------------------------  816 (1096)
T ss_pred             eeecCCCceEEEEEEEeec------cCCCCcccceEEEEEEec-------------------------------------
Confidence            999875  79999999988      899999999999999993                                     


Q ss_pred             cCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccce
Q 014962          152 SSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRF  231 (415)
Q Consensus       152 ~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~  231 (415)
                                            ..+|+++|++.++|+|++|+.|+|| ||||+|+.|.+|+|..  .++|+.++....+.
T Consensus       817 ----------------------~~~L~~v~e~~v~Gav~aL~~fngk-llA~In~~vrLye~t~--~~eLr~e~~~~~~~  871 (1096)
T KOG1897|consen  817 ----------------------LNSLELVAETVVKGAVYALVEFNGK-LLAGINQSVRLYEWTT--ERELRIECNISNPI  871 (1096)
T ss_pred             ----------------------CCceeeeeeeeeccceeehhhhCCe-EEEecCcEEEEEEccc--cceehhhhcccCCe
Confidence                                  1389999999999999999999999 9999999999999997  36899999999999


Q ss_pred             EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCCCCC
Q 014962          232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASP  311 (415)
Q Consensus       232 ~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~  311 (415)
                      ++..|++.+|+|+|||+|+|++++.|+.+++.|+++|||+.|+|+++++++|+++++++|++||+|++++|.++.+. ++
T Consensus       872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td-~e  950 (1096)
T KOG1897|consen  872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTD-EE  950 (1096)
T ss_pred             EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCch-hh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999765543 34


Q ss_pred             CCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEecChHHHHHHHHHHHHHhc
Q 014962          312 ECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAI  391 (415)
Q Consensus       312 ~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl~~~~~~~L~~LQ~~l~~  391 (415)
                      +++|+..+.||+||.|++|+.|++++..+++..         ...|+++|||.+|+||+|+.++++.+.||..||++|++
T Consensus       951 R~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~---------~~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk 1021 (1096)
T KOG1897|consen  951 RQILEEVGKFHLGELVNKFRHGSLVMQLGDSMI---------PLEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRK 1021 (1096)
T ss_pred             hhcccceeeEEeccceeeeeecceEeecccccc---------CCCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHH
Confidence            589999999999999999999999976443333         24577999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccccceec
Q 014962          392 HPLTAPLLGNDHSEFRSREN  411 (415)
Q Consensus       392 ~~~~~~~~gl~h~~~Rs~~~  411 (415)
                        .++++||++|.+||++++
T Consensus      1022 --~i~s~gglsH~~yrsf~~ 1039 (1096)
T KOG1897|consen 1022 --VIKSVGGLSHMDYRSFEF 1039 (1096)
T ss_pred             --hhcccCCcchhhHhhhhc
Confidence              999999999999999999

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=100.00  E-value=4.4e-57  Score=484.50  Aligned_cols=336  Identities=21%  Similarity=0.281  Sum_probs=295.4

Q ss_pred             CCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC----------------------CcceeeEEEEeCCCCcEEEEEe
Q 014962            4 NKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN----------------------DTCSSDICCVDPLSGSVLSSFK   61 (415)
Q Consensus         4 ~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~----------------------~~~~s~i~l~d~~t~~~i~s~~   61 (415)
                      -++||+++|||+.|||.++||++.++|+|+++.+..                      ....+.|+|++|.+|++++.++
T Consensus       942 dn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~ie 1021 (1366)
T KOG1896|consen  942 DNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIE 1021 (1366)
T ss_pred             CCCCcccccccccchhheeeeccceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccc
Confidence            478999999999999999999999999999865432                      1346899999999999999999


Q ss_pred             CCCCCeEEEEEEEEEC-------CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCc
Q 014962           62 LELGETGKSMELVRVG-------HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQ  134 (415)
Q Consensus        62 l~~~E~~~si~~~~l~-------~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~  134 (415)
                      |+++|++++|+.+.|.       .++||+|||++.+       |||.+++||+++|+|.                     
T Consensus      1022 fq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~-------gEDv~~RGr~hi~diI--------------------- 1073 (1366)
T KOG1896|consen 1022 FQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQ-------GEDVPARGRIHIFDII--------------------- 1073 (1366)
T ss_pred             cCccceeeEEEEEEEEecccccCCcceEEEEEeecc-------cccccCcccEEEEEEE---------------------
Confidence            9999999999999995       2599999999994       9999999999999999                     


Q ss_pred             cCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeC
Q 014962          135 RTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFP  214 (415)
Q Consensus       135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~  214 (415)
                            |||               |.    +|++.+   +.|||.+++++++|+|.++|.++|+ |+.+.|+||++|+|+
T Consensus      1074 ------eVV---------------Pe----pgkP~t---~~KlKel~~eE~KGtVsavceV~G~-l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1074 ------EVV---------------PE----PGKPFT---KNKLKELYIEEQKGTVSAVCEVRGH-LLSSQGQKIIVRKLD 1124 (1366)
T ss_pred             ------Eec---------------CC----CCCCcc---cceeeeeehhhcccceEEEEEeccE-EEEccCcEEEEEEec
Confidence                  466               33    345443   4799999999999999999999999 999999999999997


Q ss_pred             CCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC---eEEEeC
Q 014962          215 NDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSD  291 (415)
Q Consensus       215 ~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d---~~l~aD  291 (415)
                      +++  .|..+||+|++.|++++.+.||+|++||+|+|++|++|++++.+|++++||..++.|++++||.++   .|+++|
T Consensus      1125 r~~--~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1125 RDS--ELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred             cCC--cceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence            754  488889999999999999999999999999999999999999999999999999999999998654   799999


Q ss_pred             CCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCCceEE--EEeCCcceE
Q 014962          292 RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTII--ASTLLGSIV  369 (415)
Q Consensus       292 ~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il--y~T~~GsIG  369 (415)
                      +++||+++.|.|+..++-++ +||.++++||+|..|++|.+-...   ...+..        ..++..+  |||++|++|
T Consensus      1203 a~rNi~vy~Y~Pe~~eS~~G-~RLv~radfhvg~~vs~m~~lp~~---~~~e~~--------~~~~~~~~v~gtlDG~l~ 1270 (1366)
T KOG1896|consen 1203 ADRNIHVYMYAPENIESLSG-QRLVRRADFHVGAHVSTMFRLPCH---QNAEFG--------SNSPMFYEVFGTLDGGLG 1270 (1366)
T ss_pred             CCCcEEEEEeCCCCccccCc-ceeeeeeeeEeccceeeeEecccc---ccchhc--------cCCchhhhhhcccCCcee
Confidence            99999999999977766665 699999999999999999654311   111111        1234444  899999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhcCCCCCCCCCCCcccccceecC
Q 014962          370 IFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP  412 (415)
Q Consensus       370 ~l~pl~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~~p  412 (415)
                      .++||+|+.|++|..||++|.+  .++++|||||++||-...+
T Consensus      1271 ~~~Pl~e~~YRRL~~lQn~L~~--~~~hv~GLNPr~yR~~~s~ 1311 (1366)
T KOG1896|consen 1271 HLVPLDEKTYRRLLMLQNALMD--RLPHVGGLNPRAYRLLDSS 1311 (1366)
T ss_pred             EEecCCHHHHHHHHHHHHHHHH--hhhhhcCCCHHHhhhccch
Confidence            9999999999999999999999  8899999999999987654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=100.00  E-value=3.1e-55  Score=435.57  Aligned_cols=293  Identities=32%  Similarity=0.496  Sum_probs=239.3

Q ss_pred             eeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-----eeEEEEeeecCCCCCCCCCCCccccc-cEEEEEEEEecc
Q 014962           43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-----EQVLVVGTSLSSGPAIMPSGEAESTK-GRLIVLCIEHMQ  116 (415)
Q Consensus        43 ~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-----~~~lvVGT~~~~~~~~~~~~e~~~~~-Gri~vf~i~~~~  116 (415)
                      +|+|+|+|+.+|+++++|+|+++|.++|++.++|.+     .+||||||++..       +|+..++ |||++|++.+. 
T Consensus         1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~-------~~~~~~~~Gri~v~~i~~~-   72 (321)
T PF03178_consen    1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNY-------GEDPEPSSGRILVFEISES-   72 (321)
T ss_dssp             --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE---------TTSSS-S-EEEEEEEECSS-
T ss_pred             CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccc-------cccccccCcEEEEEEEEcc-
Confidence            479999999999999999999999999999999985     699999999985       4555444 99999999930 


Q ss_pred             cCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeC
Q 014962          117 NSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL  196 (415)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~  196 (415)
                                                                |            ...++|+++++++++|+|++|+.++
T Consensus        73 ------------------------------------------~------------~~~~~l~~i~~~~~~g~V~ai~~~~   98 (321)
T PF03178_consen   73 ------------------------------------------P------------ENNFKLKLIHSTEVKGPVTAICSFN   98 (321)
T ss_dssp             -----------------------------------------------------------EEEEEEEEEESS-EEEEEEET
T ss_pred             ------------------------------------------c------------ccceEEEEEEEEeecCcceEhhhhC
Confidence                                                      1            1136999999999999999999999


Q ss_pred             CceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCccee
Q 014962          197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLV  276 (415)
Q Consensus       197 g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~v  276 (415)
                      |+ |++|+|++|++|+|+.+  +.|.+.|+++.++++++|.+.+|+|+|||+++|+++++|+++..+|.++|||+.++|+
T Consensus        99 ~~-lv~~~g~~l~v~~l~~~--~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v  175 (321)
T PF03178_consen   99 GR-LVVAVGNKLYVYDLDNS--KTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWV  175 (321)
T ss_dssp             TE-EEEEETTEEEEEEEETT--SSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEE
T ss_pred             CE-EEEeecCEEEEEEccCc--ccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccE
Confidence            99 99999999999999984  3377779999999999999999999999999999999999988899999999999999


Q ss_pred             EEEEee-eCCeEEEeCCCCcEEEEecCCCcCCCCCCCC-ccceeeeeecCccccEEEeeceeccCCCCCccccccccCCC
Q 014962          277 ADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPEC-NLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFES  354 (415)
Q Consensus       277 ta~~~L-d~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~-kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~  354 (415)
                      ++++|| |++.++++|++|||++|++++...++.+ .+ +|+..++||+|+.||+|+++++.+. ......        .
T Consensus       176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~-~~~~L~~~~~f~lg~~v~~~~~~~l~~~-~~~~~~--------~  245 (321)
T PF03178_consen  176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRD-GDPKLERISSFHLGDIVNSFRRGSLIPR-SGSSES--------P  245 (321)
T ss_dssp             EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTT-TTTBEEEEEEEE-SS-EEEEEE--SS---SSSS-T--------T
T ss_pred             EEEEEecCCcEEEEEcCCCeEEEEEECCCCccccc-ccccceeEEEEECCCccceEEEEEeeec-CCCCcc--------c
Confidence            999999 7789999999999999999876554333 34 8999999999999999999998632 111110        1


Q ss_pred             CCceEEEEeCCcceEEEEe-cChHHHHHHHHHHHHHhcCCCCCCCCCCCcccccceecC
Q 014962          355 SQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP  412 (415)
Q Consensus       355 ~~~~ily~T~~GsIG~l~p-l~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~~p  412 (415)
                      ..+.++|+|++|+||.|+| +++++|++|+.||++|++  .+++++|++|++||++++|
T Consensus       246 ~~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~~l~~--~~~~~~gl~~~~~R~~~~~  302 (321)
T PF03178_consen  246 NRPQILYGTVDGSIGVLIPFLSEEEYRFLQALQNNLRK--HIPSLGGLNPRSFRSYKNP  302 (321)
T ss_dssp             EEEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHHHHHH--HS--TTS--HHHHTSEEES
T ss_pred             ccceEEEEecCCEEEEEEecCCHHHHHHHHHHHHHHHh--hCCCCccCChHHhccccCc
Confidence            2578999999999999999 799999999999999999  8899999999999999998

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=100.00  E-value=3.6e-55  Score=465.07  Aligned_cols=327  Identities=30%  Similarity=0.442  Sum_probs=296.8

Q ss_pred             CceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC---------------------------------------------
Q 014962            5 KRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN---------------------------------------------   39 (415)
Q Consensus         5 ~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~---------------------------------------------   39 (415)
                      ..++...+||++||||+++||+++++++++++++.                                             
T Consensus       763 ~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~  842 (1205)
T KOG1898|consen  763 KVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVY  842 (1205)
T ss_pred             ccccccccccccCcceEEEecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccc
Confidence            55899999999999999999999999999998753                                             


Q ss_pred             ------CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC---eeEEEEeeecCCCCCCCCCCCccccccEEEEE
Q 014962           40 ------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH---EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVL  110 (415)
Q Consensus        40 ------~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~---~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf  110 (415)
                            ..|.|+|+++|+.++.++..+++..||...|++.+.|.+   .++++||++.+.  .+.+..   -+.|++|+|
T Consensus       843 ~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~--~l~~~~---~~~g~~yty  917 (1205)
T KOG1898|consen  843 GSPRAGNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTE--QLDSKS---ISSGFVYTY  917 (1205)
T ss_pred             cCcccccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccc--cccccc---cCCCceEEE
Confidence                  138899999999999999999999999999999999974   369999999876  233322   378999999


Q ss_pred             EEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceE
Q 014962          111 CIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVL  190 (415)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~  190 (415)
                      ++..                                             +             +.+|+|+|+++++|+|.
T Consensus       918 k~~~---------------------------------------------~-------------g~~lellh~T~~~~~v~  939 (1205)
T KOG1898|consen  918 KFVR---------------------------------------------N-------------GDKLELLHKTEIPGPVG  939 (1205)
T ss_pred             EEEe---------------------------------------------c-------------CceeeeeeccCCCccce
Confidence            9994                                             1             23899999999999999


Q ss_pred             EEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecC
Q 014962          191 AICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCD  270 (415)
Q Consensus       191 al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD  270 (415)
                      |||+|.|+ +|+|+|+.+++|++++  +++||++.+-.++.+|++|++.+.+|+|||+++||.|++|+++.|+|+.+|+|
T Consensus       940 Ai~~f~~~-~LagvG~~l~~YdlG~--K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen  940 AICPFQGR-VLAGVGRFLRLYDLGK--KKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred             EEeccCCE-EEEecccEEEEeeCCh--HHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence            99999998 9999999999999998  57899977777799999999999999999999999999999999999999999


Q ss_pred             CCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCC--CCC---------------CCccceeeeeecCccccEEEee
Q 014962          271 PSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDN--ASP---------------ECNLTPNCAYHMGEIAVSIRKG  333 (415)
Q Consensus       271 ~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~--~~~---------------~~kL~~~~~fhlGd~Vt~~~~g  333 (415)
                      +.|||||++.+||++++++||++||++++|.|++.++.  ++|               .+|.+.+.+||+||.++++++.
T Consensus      1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~~g~lN~~~~K~~~i~~f~v~Dvits~q~~ 1096 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWEQGFLNDAPQKVQLISQFFVGDVITSLQKV 1096 (1205)
T ss_pred             CccceeeEEEEecCCceeeccccCcEEEEECCCcchhhhccCCccccceecccccccccHhhhhhhhccccCeeeeceee
Confidence            99999999999999999999999999999999976642  222               1689999999999999999988


Q ss_pred             ceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEec-ChHHHHHHHHHHHHHhcCCCCCCCCCCCcccccceecC
Q 014962          334 SFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPI-SSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP  412 (415)
Q Consensus       334 sl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl-~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~~p  412 (415)
                      ++.                +++++.++|+|+.|+||+++|+ ++++++||+.+|++|+.  +.+|++|+||.+|||||+|
T Consensus      1097 ~~i----------------~~a~e~~iy~tl~GtiG~f~p~~s~~d~~Ff~~~e~~~r~--e~ppl~GrDH~~yRsyy~P 1158 (1205)
T KOG1898|consen 1097 SSI----------------PGARESLIYTTLLGTIGVFAPFLSREDVDFFQHLEMHMRK--EYPPLLGRDHLEYRSYYAP 1158 (1205)
T ss_pred             eec----------------cCCcceeeeeeccccceEEeecccccchHHHHHHHHhccc--cCCcccCcchhhhhhhccc
Confidence            873                4778999999999999999999 78899999999999999  9999999999999999999


Q ss_pred             CCC
Q 014962          413 VRK  415 (415)
Q Consensus       413 ~~~  415 (415)
                      |||
T Consensus      1159 vk~ 1161 (1205)
T KOG1898|consen 1159 VKK 1161 (1205)
T ss_pred             hhh
Confidence            996

>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]

Probab=100.00  E-value=3.9e-45  Score=381.12  Aligned_cols=335  Identities=18%  Similarity=0.265  Sum_probs=293.8

Q ss_pred             CCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC---------------------CcceeeEEEEeCCCCcEEEEEeC
Q 014962            4 NKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN---------------------DTCSSDICCVDPLSGSVLSSFKL   62 (415)
Q Consensus         4 ~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~---------------------~~~~s~i~l~d~~t~~~i~s~~l   62 (415)
                      .+||+++++|++.|-.+|+||+..++|+|...+..+                     .-.++.|-|++|.+|++|++|+|
T Consensus       897 gnK~p~k~~~~~Ktlqklvyh~~~~~~~Vgsc~~~~f~~~gEdgE~~i~~D~Nvphaeg~~~~vdL~spksw~vID~yef  976 (1319)
T COG5161         897 GNKNPVKRTPKHKTLQKLVYHCAGRYMVVGSCEEAGFSPKGEDGESGIPVDTNVPHAEGYRFYVDLYSPKSWEVIDTYEF  976 (1319)
T ss_pred             cccCceeeccccccccceeeeccceEEEEEeeeecCccccCCCCCccCccCCCCcccccceeeEEEecCcceeEeeeeec
Confidence            589999999999999999999999999999766532                     12579999999999999999999


Q ss_pred             CCCCeEEEEEEEEEC-------CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCcc
Q 014962           63 ELGETGKSMELVRVG-------HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQR  135 (415)
Q Consensus        63 ~~~E~~~si~~~~l~-------~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~  135 (415)
                      ++||.+.+|+.+.+.       +.||++|||++.       .|||.|.+||+++|+|.+                     
T Consensus       977 ~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~-------~gED~p~rG~~hv~eII~--------------------- 1028 (1319)
T COG5161         977 DENEYVFHIKYLILDDMQGTKGKSPYILVGTTFI-------EGEDRPARGRLHVLEIIS--------------------- 1028 (1319)
T ss_pred             ccceeeeeeeeeeeeccccccCCCceEEEEeeec-------ccCccCCcCceEEEEEEE---------------------
Confidence            999999999999986       259999999998       699999999999999994                     


Q ss_pred             CCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCC
Q 014962          136 TSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPN  215 (415)
Q Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~  215 (415)
                            ||             ++|      |++ ++  +.|||++..++++|.|..+|.+.|+ ++.+.|+||+|+++++
T Consensus      1029 ------VV-------------P~p------g~P-~t--~~KLK~~~~Ee~kGTV~~vcEV~G~-~~~~qgqKV~Vr~i~~ 1079 (1319)
T COG5161        1029 ------VV-------------PSP------GSP-FT--DCKLKVLGIEETKGTVVRVCEVRGK-IALCQGQKVMVRKIDR 1079 (1319)
T ss_pred             ------ec-------------CCC------CCC-cc--cceeeEEehhhcccEEEEEEEEccE-EEeccCcEEEEEEecc
Confidence                  55             222      332 33  5799999999999999999999999 9999999999999998


Q ss_pred             CCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC---eEEEeCC
Q 014962          216 DNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSDR  292 (415)
Q Consensus       216 ~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d---~~l~aD~  292 (415)
                      ++  -+..++|+|.+.+++++++.+|++++||+|++++|+.|++++..++.+++....+.+++.+||..+   .|+++|+
T Consensus      1080 ~~--~iipV~F~Dl~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da 1157 (1319)
T COG5161        1080 SS--GIIPVGFYDLHIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDA 1157 (1319)
T ss_pred             cC--CcceeEEEeeeeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcC
Confidence            65  377789999999999999999999999999999999999999999999999999999999999653   7999999


Q ss_pred             CCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEE
Q 014962          293 KGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFI  372 (415)
Q Consensus       293 ~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~  372 (415)
                      .|||+++.|.|+.+++-++ +||+.++.||+|...++|.-.      |.++.-+..    .+..-+-+|+-++|++-.++
T Consensus      1158 ~gnih~l~Y~P~np~S~sG-~RLV~rssFtlhs~~~~m~ll------Prn~efG~~----~~~~f~~v~~~sdG~l~~vv 1226 (1319)
T COG5161        1158 KGNIHGLTYSPNNPISMSG-ARLVKRSSFTLHSAEIKMNLL------PRNSEFGAG----FKKNFIMVYSRSDGMLIHVV 1226 (1319)
T ss_pred             CCCEEEEecCCCCccccCc-ceeEeeccccccchhhhhhhc------cchhhhCCC----CCCceeEEEEccCCcEEEEe
Confidence            9999999999977766666 699999999999999998422      322222110    02245788999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhcCCCCCCCCCCCccccccee
Q 014962          373 PISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRE  410 (415)
Q Consensus       373 pl~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~  410 (415)
                      ||+++.|++|.-+|+++.+  .+.+++|+||++||-..
T Consensus      1227 pisd~~YrrL~~IQ~~i~~--r~~~vgGLNpr~yRL~~ 1262 (1319)
T COG5161        1227 PISDAHYRRLLGIQTAIMA--RLKSVGGLNPRDYRLNS 1262 (1319)
T ss_pred             ccCHHHHHHHHHHHHHHHH--HHHhhcCCChhhhhhcc
Confidence            9999999999999999999  78999999999999643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.23  E-value=0.00021  Score=73.93  Aligned_cols=199  Identities=17%  Similarity=0.209  Sum_probs=135.4

Q ss_pred             EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCC
Q 014962           12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG   91 (415)
Q Consensus        12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~   91 (415)
                      ++|+.+|+-++..++..+.+|+|..        .|.|+...+.-..-.+.|+    ..|+++  -.+..+++||--    
T Consensus       402 ~~lg~QP~~lav~~d~~~avv~~~~--------~iv~l~~~~~~~~~~~~y~----~s~vAv--~~~~~~vaVGG~----  463 (603)
T KOG0318|consen  402 VKLGSQPKGLAVLSDGGTAVVACIS--------DIVLLQDQTKVSSIPIGYE----SSAVAV--SPDGSEVAVGGQ----  463 (603)
T ss_pred             eecCCCceeEEEcCCCCEEEEEecC--------cEEEEecCCcceeeccccc----cceEEE--cCCCCEEEEecc----
Confidence            6899999999999998888888744        3777776543322222322    222222  235689999922    


Q ss_pred             CCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccc
Q 014962           92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE  171 (415)
Q Consensus        92 ~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~  171 (415)
                                  -|.+++|.+.-                                              +     .    
T Consensus       464 ------------Dgkvhvysl~g----------------------------------------------~-----~----  476 (603)
T KOG0318|consen  464 ------------DGKVHVYSLSG----------------------------------------------D-----E----  476 (603)
T ss_pred             ------------cceEEEEEecC----------------------------------------------C-----c----
Confidence                        36799999982                                              0     0    


Q ss_pred             cccceEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecC
Q 014962          172 TETWQLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCR  249 (415)
Q Consensus       172 ~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~  249 (415)
                          ..+-....+.+|++++|.-- .|.||+++ ...++.+|+...... .....+|+...+..++-.....++.-|-+-
T Consensus       477 ----l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  477 ----LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             ----ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence                11123336778999999844 46777776 677799999986322 233334444333333334455577778888


Q ss_pred             CcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          250 DGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       250 ~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      ..|.++..+.-...  .++++.++..|+.+.+||+.+++.+-.+-||-+...+
T Consensus       552 t~Viiysv~kP~~~--i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  552 TNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ceEEEEEccChhhh--eEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence            99988877654443  8889999999999999999999999999998877643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.84  E-value=0.014  Score=57.98  Aligned_cols=209  Identities=16%  Similarity=0.150  Sum_probs=133.6

Q ss_pred             eEEEEeCCC--ccCEEEEec-------CCCEEEEEEEeeCCC--cce-eeEEEEeCCCC-------cEEEEEeCCCCCeE
Q 014962            8 NVRKFHLGG--TPKKVLYHS-------ESRLLIVMRTELNND--TCS-SDICCVDPLSG-------SVLSSFKLELGETG   68 (415)
Q Consensus         8 ~i~~i~L~~--tp~~I~y~~-------~~~~~~v~~~~~~~~--~~~-s~i~l~d~~t~-------~~i~s~~l~~~E~~   68 (415)
                      .+.+++|..  .+..++...       ....++|++.....+  ... +.|.+++-...       +.+++.++  ...|
T Consensus        14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V   91 (321)
T PF03178_consen   14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPV   91 (321)
T ss_dssp             EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-E
T ss_pred             EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcc
Confidence            444555543  555444432       234566666554332  233 78888887662       35555555  4568


Q ss_pred             EEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeeccccc
Q 014962           69 KSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATE  148 (415)
Q Consensus        69 ~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  148 (415)
                      .+++.+   + .++++|..                 ++|++|++..                                  
T Consensus        92 ~ai~~~---~-~~lv~~~g-----------------~~l~v~~l~~----------------------------------  116 (321)
T PF03178_consen   92 TAICSF---N-GRLVVAVG-----------------NKLYVYDLDN----------------------------------  116 (321)
T ss_dssp             EEEEEE---T-TEEEEEET-----------------TEEEEEEEET----------------------------------
T ss_pred             eEhhhh---C-CEEEEeec-----------------CEEEEEEccC----------------------------------
Confidence            877776   3 33776643                 5899999993                                  


Q ss_pred             ccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeee
Q 014962          149 QLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVG  227 (415)
Q Consensus       149 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~  227 (415)
                                 +              .+|......+..-.|.+|..++++ +++| +-..+.++.|+.++ +.|...|--
T Consensus       117 -----------~--------------~~l~~~~~~~~~~~i~sl~~~~~~-I~vgD~~~sv~~~~~~~~~-~~l~~va~d  169 (321)
T PF03178_consen  117 -----------S--------------KTLLKKAFYDSPFYITSLSVFKNY-ILVGDAMKSVSLLRYDEEN-NKLILVARD  169 (321)
T ss_dssp             -----------T--------------SSEEEEEEE-BSSSEEEEEEETTE-EEEEESSSSEEEEEEETTT-E-EEEEEEE
T ss_pred             -----------c--------------ccchhhheecceEEEEEEeccccE-EEEEEcccCEEEEEEEccC-CEEEEEEec
Confidence                       1              147778888888899999999887 8877 45669999988643 346665654


Q ss_pred             ccceEEEEEEEe--CCEEEEeecCCcEEEEEEEccC------C-eEEEEecCCCcceeEEE---Eeee---C-C-----e
Q 014962          228 RTRFMIMLLTAH--FTRIAVGDCRDGILFYSYHEDA------R-KLEQIYCDPSQRLVADC---VLMD---V-D-----T  286 (415)
Q Consensus       228 ~~~~~i~sI~~~--~n~IlVGD~~~Sv~ll~y~~~~------~-~L~~varD~~~~~vta~---~~Ld---~-d-----~  286 (415)
                      ..+..++++...  ++.++++|....+++++|+++.      . +|..++.=.....+++.   .+..   . +     .
T Consensus       170 ~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~  249 (321)
T PF03178_consen  170 YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQ  249 (321)
T ss_dssp             SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEE
T ss_pred             CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccce
Confidence            456677787765  4599999999999999998642      2 78888877677777777   3332   1 2     2


Q ss_pred             EEEeCCCCcEEEEe
Q 014962          287 AVVSDRKGSIAVLS  300 (415)
Q Consensus       287 ~l~aD~~gNl~vl~  300 (415)
                      ++.+-.+|.|.++.
T Consensus       250 i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  250 ILYGTVDGSIGVLI  263 (321)
T ss_dssp             EEEEETTS-EEEEE
T ss_pred             EEEEecCCEEEEEE
Confidence            88899999999665

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.64  E-value=0.048  Score=49.87  Aligned_cols=111  Identities=8%  Similarity=0.023  Sum_probs=66.0

Q ss_pred             cCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcEEEEEEEcc
Q 014962          185 WPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       185 ~~g~V~al~~~~-g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      ..+++.+++-.. +.+|+++. .+.+.+|++...  +.+.......  ..+.++..  .++.++++..-..+.++..+  
T Consensus       134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~--  207 (289)
T cd00200         134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--KCVATLTGHT--GEVNSVAFSPDGEKLLSSSSDGTIKLWDLS--  207 (289)
T ss_pred             CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--ccceeEecCc--cccceEEECCCcCEEEEecCCCcEEEEECC--
Confidence            456788887555 56355555 778999999742  2233322222  24555554  44588888876677665543  


Q ss_pred             CCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962          261 ARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       261 ~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~  302 (415)
                      ..+....-. .....+.++.+..++ .+++++.+|.|.++...
T Consensus       208 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         208 TGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             CCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence            333322221 233477777776544 56666669999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.15  E-value=0.24  Score=48.97  Aligned_cols=129  Identities=12%  Similarity=0.075  Sum_probs=78.0

Q ss_pred             CCceEEEEe--CCeEEEEeeCCCCccceeeeeeec-------cceEE--EEEEEeCCEEEEeec-CCcEEEEEEEccCCe
Q 014962          196 LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGR-------TRFMI--MLLTAHFTRIAVGDC-RDGILFYSYHEDARK  263 (415)
Q Consensus       196 ~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~-------~~~~i--~sI~~~~n~IlVGD~-~~Sv~ll~y~~~~~~  263 (415)
                      .|++|.++-  .++|.+|++.... ..++......       .+.+.  ..+...+.++++++. ..++.++.++++...
T Consensus       185 dg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~  263 (330)
T PRK11028        185 NQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV  263 (330)
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence            456565553  6889999997421 1222211111       11122  334467789999985 578999999877666


Q ss_pred             EEEEecCCCcceeEEEEee-eCCeEEEeCC-CCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEe
Q 014962          264 LEQIYCDPSQRLVADCVLM-DVDTAVVSDR-KGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRK  332 (415)
Q Consensus       264 L~~varD~~~~~vta~~~L-d~d~~l~aD~-~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~  332 (415)
                      +..++.-....+...+.+- |...++++.. ++.|.+++.+..     +  ..|.....+..|..++++..
T Consensus       264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~-----~--g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE-----T--GLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC-----C--CcEEEccccccCCCceEEEE
Confidence            6666654332233334443 3346666665 778999987641     1  24767778888888888764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.99  E-value=0.25  Score=55.39  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=69.2

Q ss_pred             cCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCC----ccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962          185 WPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDN----PQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE  259 (415)
Q Consensus       185 ~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~----~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~  259 (415)
                      ..++|.++.-..+.+|+++ ..+.|.+|++....    .+.++...-+......+.+...+++|++|..-..+.++....
T Consensus       660 h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        660 HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            3467777776667645554 34568999986421    122333222233334455666788999999888887765332


Q ss_pred             cCCeEEE----------EecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEec
Q 014962          260 DARKLEQ----------IYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       260 ~~~~L~~----------varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~  301 (415)
                      ....+..          +.-+....+|.++.+-. ...++++..+|+|.++++
T Consensus       740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            1111110          11122344677777743 348899999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.97  E-value=0.28  Score=44.70  Aligned_cols=191  Identities=15%  Similarity=0.082  Sum_probs=109.4

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....+.++|+.+.++++..       ...++++|..+.+.+..+.... ..+   ..+.+. +..++++|+.        
T Consensus        11 ~i~~~~~~~~~~~l~~~~~-------~g~i~i~~~~~~~~~~~~~~~~-~~i---~~~~~~~~~~~l~~~~~--------   71 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSG-------DGTIKVWDLETGELLRTLKGHT-GPV---RDVAASADGTYLASGSS--------   71 (289)
T ss_pred             CEEEEEEcCCCCEEEEeec-------CcEEEEEEeeCCCcEEEEecCC-cce---eEEEECCCCCEEEEEcC--------
Confidence            5567888998887777653       2468888887776555444322 222   223332 3457777643        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|++...                                                           .
T Consensus        72 --------~~~i~i~~~~~~-----------------------------------------------------------~   84 (289)
T cd00200          72 --------DKTIRLWDLETG-----------------------------------------------------------E   84 (289)
T ss_pred             --------CCeEEEEEcCcc-----------------------------------------------------------c
Confidence                    578889988720                                                           0


Q ss_pred             eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCc
Q 014962          176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDG  251 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~~-g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~S  251 (415)
                      .+..+  ...++++.+++-.. +++++++. .+.+.+|++...  +.+.....+  .-.+..+..  .+.++++|+.-..
T Consensus        85 ~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          85 CVRTL--TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             ceEEE--eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccC--CCcEEEEEEcCcCCEEEEEcCCCc
Confidence            11111  13345677777554 35344444 577999999741  223332222  223444444  4567777775666


Q ss_pred             EEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962          252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       252 v~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~  302 (415)
                      +.++..+  .++....-. .....+.++.+..++ .++.+..+|.+.++...
T Consensus       159 i~i~d~~--~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  207 (289)
T cd00200         159 IKLWDLR--TGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS  207 (289)
T ss_pred             EEEEEcc--ccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence            7665543  332222222 233467777776554 77777779999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=96.90  E-value=0.14  Score=49.23  Aligned_cols=107  Identities=14%  Similarity=0.136  Sum_probs=61.8

Q ss_pred             CceEEEeee-CCceEEEEeCCe--EEEEeeCCCC-ccceeeee-eeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEc
Q 014962          187 GMVLAICPY-LDRYFLASAGNA--FYVCGFPNDN-PQRVRRFA-VGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHE  259 (415)
Q Consensus       187 g~V~al~~~-~g~yLl~~vg~~--l~v~~~~~~~-~~~L~~~a-~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~  259 (415)
                      -+|++++.. .|. .++|++++  +|||++-.+. ...|.... +-...-+|.+..  ..+.+|+..-+-+-+.+++  .
T Consensus       168 ~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn--~  244 (311)
T KOG0315|consen  168 TSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN--T  244 (311)
T ss_pred             cceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe--c
Confidence            456666655 467 67888877  8898886532 11222211 111122455443  3556777777778776554  4


Q ss_pred             cCCeEEEEecCCCcceeEEEEeeeCCeEE-EeCCCCcE
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMDVDTAV-VSDRKGSI  296 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld~d~~l-~aD~~gNl  296 (415)
                      +.--..++--+...||+-.|.|-.++.+| .+..++-.
T Consensus       245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~  282 (311)
T KOG0315|consen  245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTA  282 (311)
T ss_pred             CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCce
Confidence            44422334455577999999997666554 44444433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.41  Score=47.18  Aligned_cols=190  Identities=16%  Similarity=0.103  Sum_probs=121.0

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~   95 (415)
                      .+..++-|+|.++.++|.+       |-++++|+|-.+++....|..  .-   .+..|.|.++.-+++|+.        
T Consensus        14 d~IS~v~f~~~~~~LLvss-------WDgslrlYdv~~~~l~~~~~~--~~---plL~c~F~d~~~~~~G~~--------   73 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSS-------WDGSLRLYDVPANSLKLKFKH--GA---PLLDCAFADESTIVTGGL--------   73 (323)
T ss_pred             hceeeEEEcCcCCcEEEEe-------ccCcEEEEeccchhhhhheec--CC---ceeeeeccCCceEEEecc--------
Confidence            3557888888877777774       677899999887765443332  22   345667778888888876        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|..++++.                                           ++                
T Consensus        74 --------dg~vr~~Dln~-------------------------------------------~~----------------   86 (323)
T KOG1036|consen   74 --------DGQVRRYDLNT-------------------------------------------GN----------------   86 (323)
T ss_pred             --------CceEEEEEecC-------------------------------------------Cc----------------
Confidence                    57888999882                                           00                


Q ss_pred             eEEEEEEEecCCceEEEeee--CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcE
Q 014962          176 QLRLAYSTTWPGMVLAICPY--LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGI  252 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~--~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv  252 (415)
                      ..+ +  -.-.++|.+|+..  .|. +++ +=++++.+|+...  +   ......+.+=-|.++++.+|+++||..-+.|
T Consensus        87 ~~~-i--gth~~~i~ci~~~~~~~~-vIsgsWD~~ik~wD~R~--~---~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v  157 (323)
T KOG1036|consen   87 EDQ-I--GTHDEGIRCIEYSYEVGC-VISGSWDKTIKFWDPRN--K---VVVGTFDQGKKVYCMDVSGNRLVVGTSDRKV  157 (323)
T ss_pred             cee-e--ccCCCceEEEEeeccCCe-EEEcccCccEEEEeccc--c---ccccccccCceEEEEeccCCEEEEeecCceE
Confidence            111 1  2235678888866  666 554 3567789999874  1   1112233333788999999999999999999


Q ss_pred             EEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecC
Q 014962          253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       253 ~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~  302 (415)
                      ..+..+.-..-+ ..--..-+..+.++.++. ...++++-.+|-+.+=-.+
T Consensus       158 ~iyDLRn~~~~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  158 LIYDLRNLDEPF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             EEEEcccccchh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence            776654322211 111112233455666554 3578888888877643333

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.69  E-value=0.15  Score=55.93  Aligned_cols=160  Identities=13%  Similarity=0.192  Sum_probs=103.8

Q ss_pred             ceEEEEEEE-ecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccc-eEEEEEEEeCCEEEEeecCCcE
Q 014962          175 WQLRLAYST-TWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR-FMIMLLTAHFTRIAVGDCRDGI  252 (415)
Q Consensus       175 ~~L~l~~~~-~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~-~~i~sI~~~~n~IlVGD~~~Sv  252 (415)
                      .||.|++.- +++.-|+|++..... ..+|-|+++++|..++.    ++  +++..+ --+.-+...|+.++.+|....+
T Consensus        64 ~kl~ll~vs~~lp~~I~alas~~~~-vy~A~g~~i~~~~rgk~----i~--~~~~~~~a~v~~l~~fGe~lia~d~~~~l  136 (910)
T KOG1539|consen   64 NKLNLLFVSKPLPDKITALASDKDY-VYVASGNKIYAYARGKH----IR--HTTLLHGAKVHLLLPFGEHLIAVDISNIL  136 (910)
T ss_pred             cceEEEEecCCCCCceEEEEecCce-EEEecCcEEEEEEccce----EE--EEeccccceEEEEeeecceEEEEEccCcE
Confidence            378888754 889999999999887 99999999999999852    22  233322 2678888999999999999999


Q ss_pred             EEEEEEcc-CC-eEEEEecCCCcceeEEEEeee-C-CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCcccc
Q 014962          253 LFYSYHED-AR-KLEQIYCDPSQRLVADCVLMD-V-DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAV  328 (415)
Q Consensus       253 ~ll~y~~~-~~-~L~~varD~~~~~vta~~~Ld-~-d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt  328 (415)
                      .+++...- .. .+...-....-..++++.-.+ + .-++.+-..|++.++....        .+.+..--+|.  +.||
T Consensus       137 ~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt--------~K~v~~f~~~~--s~IT  206 (910)
T KOG1539|consen  137 FVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRT--------GKVVYTFQEFF--SRIT  206 (910)
T ss_pred             EEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEecc--------CcEEEEecccc--ccee
Confidence            99887652 11 111011111111255544322 1 3467778889988887543        12333333443  8888


Q ss_pred             EEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEE
Q 014962          329 SIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIF  371 (415)
Q Consensus       329 ~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l  371 (415)
                      ++.+..                    .-..+..|+.+|.|-++
T Consensus       207 ~ieqsP--------------------aLDVVaiG~~~G~Viif  229 (910)
T KOG1539|consen  207 AIEQSP--------------------ALDVVAIGLENGTVIIF  229 (910)
T ss_pred             EeccCC--------------------cceEEEEeccCceEEEE
Confidence            875332                    23567777777777554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.49  E-value=0.92  Score=44.83  Aligned_cols=187  Identities=10%  Similarity=-0.009  Sum_probs=107.7

Q ss_pred             EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEE-----EEEeCCCCCeEEEEEEEEE-CCeeEEEEe
Q 014962           12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVL-----SSFKLELGETGKSMELVRV-GHEQVLVVG   85 (415)
Q Consensus        12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i-----~s~~l~~~E~~~si~~~~l-~~~~~lvVG   85 (415)
                      ++-...|+.++++|+.+.++|...      ....|.++|..+...+     ....++.++.+..+   .| .+..++.|.
T Consensus       122 ~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~---~~~pdg~~lyv~  192 (330)
T PRK11028        122 IEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM---VFHPNQQYAYCV  192 (330)
T ss_pred             ccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCceE---EECCCCCEEEEE
Confidence            333457888999999888777653      2346888887653322     22344555554433   33 345677665


Q ss_pred             eecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCC
Q 014962           86 TSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCD  165 (415)
Q Consensus        86 T~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  165 (415)
                      ..               ..+.|.+|++...                                                  
T Consensus       193 ~~---------------~~~~v~v~~~~~~--------------------------------------------------  207 (330)
T PRK11028        193 NE---------------LNSSVDVWQLKDP--------------------------------------------------  207 (330)
T ss_pred             ec---------------CCCEEEEEEEeCC--------------------------------------------------
Confidence            33               2578999999820                                                  


Q ss_pred             CccccccccceEEEEEEEe-----cCCc--e--EEEeeeCCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccce--E
Q 014962          166 GIKLEETETWQLRLAYSTT-----WPGM--V--LAICPYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRF--M  232 (415)
Q Consensus       166 g~~~~~~~~~~L~l~~~~~-----~~g~--V--~al~~~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~--~  232 (415)
                              +-+++++.+..     ..++  +  .++.+ +|++|.++.  .+.|.+|++..++ ..++......+..  .
T Consensus       208 --------~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~-~~~~~~~~~~~~~~p~  277 (330)
T PRK11028        208 --------HGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDG-SVLSFEGHQPTETQPR  277 (330)
T ss_pred             --------CCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCC-CeEEEeEEEeccccCC
Confidence                    00222222211     1111  1  12223 567677763  3568999997643 2233323322221  2


Q ss_pred             EEEEEEeCCEEEEeec-CCcEEEEEEEccCCeEEEEecCCCcceeEEEEee
Q 014962          233 IMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM  282 (415)
Q Consensus       233 i~sI~~~~n~IlVGD~-~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L  282 (415)
                      ...+...|.+++|+.. -..+.+++.+.+.+.|..+++=....+..++.||
T Consensus       278 ~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~~  328 (330)
T PRK11028        278 GFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSVL  328 (330)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEEE
Confidence            3455567889999886 4579899888877888777654455566666664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.13  E-value=0.3  Score=48.43  Aligned_cols=173  Identities=12%  Similarity=0.078  Sum_probs=101.9

Q ss_pred             CceEEEeee-CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEEccCCe
Q 014962          187 GMVLAICPY-LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       187 g~V~al~~~-~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      -||++||-- .|+.||. +.-+++.+|++...  ..|+...| +.|..-..... ..|..++.=+.+|-.+..|..-..+
T Consensus        66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~  142 (405)
T KOG1273|consen   66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS  142 (405)
T ss_pred             cceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee
Confidence            478888844 4663553 46677999999874  23544333 33444444444 4466777667778888888864444


Q ss_pred             EEEEecCCCcceeEEEEeeeCC--eEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCC
Q 014962          264 LEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPA  341 (415)
Q Consensus       264 L~~varD~~~~~vta~~~Ld~d--~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~  341 (415)
                      +...-.|-....+.++.+.|..  .++.+...|-|.++...           .|..++.|.+-. ++.+..--+.     
T Consensus       143 ~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-----------t~e~vas~rits-~~~IK~I~~s-----  205 (405)
T KOG1273|consen  143 VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-----------TLECVASFRITS-VQAIKQIIVS-----  205 (405)
T ss_pred             eccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-----------hheeeeeeeech-heeeeEEEEe-----
Confidence            4444444445556666666653  78899999999988832           356677777755 4444332221     


Q ss_pred             CCccccccccCCCCCceEEEEeCCcceEE--EEecC----hHHHHHHHHHHHHHhc
Q 014962          342 DDALGDCLASFESSQTTIIASTLLGSIVI--FIPIS----SEEYELLEAVQARLAI  391 (415)
Q Consensus       342 ~~~~~~~~~~~~~~~~~ily~T~~GsIG~--l~pl~----~~~~~~L~~LQ~~l~~  391 (415)
                                  -.+..+++-|.+-.|-.  +-.|.    ..+.+..+++|..+.+
T Consensus       206 ------------~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk  249 (405)
T KOG1273|consen  206 ------------RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK  249 (405)
T ss_pred             ------------ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence                        12345666666665532  22221    2245555666665554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.97  E-value=1  Score=49.25  Aligned_cols=200  Identities=14%  Similarity=0.112  Sum_probs=121.7

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEeccc------
Q 014962           44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQN------  117 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~------  117 (415)
                      .+|++-+-.|.+.+-+++-.   .++|.  .-..++.||++||-                .|.|.+|++.+...      
T Consensus       394 ~SikiWn~~t~kciRTi~~~---y~l~~--~Fvpgd~~Iv~G~k----------------~Gel~vfdlaS~~l~Eti~A  452 (888)
T KOG0306|consen  394 ESIKIWNRDTLKCIRTITCG---YILAS--KFVPGDRYIVLGTK----------------NGELQVFDLASASLVETIRA  452 (888)
T ss_pred             CcEEEEEccCcceeEEeccc---cEEEE--EecCCCceEEEecc----------------CCceEEEEeehhhhhhhhhc
Confidence            46888888888888776644   55443  33468899999987                44555555542110      


Q ss_pred             -----------CCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEe--
Q 014962          118 -----------SDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTT--  184 (415)
Q Consensus       118 -----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~--  184 (415)
                                 +|.++  |.-+.+-..++-+.|.=++.   |                +|.     .++.|.+.|...  
T Consensus       453 HdgaIWsi~~~pD~~g--~vT~saDktVkfWdf~l~~~---~----------------~gt-----~~k~lsl~~~rtLe  506 (888)
T KOG0306|consen  453 HDGAIWSISLSPDNKG--FVTGSADKTVKFWDFKLVVS---V----------------PGT-----QKKVLSLKHTRTLE  506 (888)
T ss_pred             cccceeeeeecCCCCc--eEEecCCcEEEEEeEEEEec---c----------------Ccc-----cceeeeeccceEEe
Confidence                       01111  11112224444454422220   1                222     123466666554  


Q ss_pred             cCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeec--cceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962          185 WPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGR--TRFMIMLLTAHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~--~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      ++.-|.|+..- +|+||+++ .+++|.||-+..  -+.  .+..|.  .|...+.|....+.|+-|-+-+.|-++..|-.
T Consensus       507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--lKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--LKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc--eee--eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence            56778888744 57877777 788899999974  111  123443  44444555567789999999999999887765


Q ss_pred             CCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEE
Q 014962          261 ARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIA  297 (415)
Q Consensus       261 ~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~  297 (415)
                      +=+-+.+|-|   -.|+++.|+..+ .|..+-++|-+-
T Consensus       583 DCHKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  583 DCHKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             hhhhhhhccc---CceeEEEEcccceeEEEecCcceEE
Confidence            5445556543   368999999876 667777777654

>PTZ00420 coronin; Provisional

Probab=95.90  E-value=3.3  Score=44.88  Aligned_cols=113  Identities=9%  Similarity=0.077  Sum_probs=61.6

Q ss_pred             CCceEEEee-eCCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccc--eEEEEE---EEeCCEEEEeecC----CcEE
Q 014962          186 PGMVLAICP-YLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTR--FMIMLL---TAHFTRIAVGDCR----DGIL  253 (415)
Q Consensus       186 ~g~V~al~~-~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~--~~i~sI---~~~~n~IlVGD~~----~Sv~  253 (415)
                      .+.|++++- ..|. +|++.  +.+|++|++...  +.+.....+...  ..+..+   ...+++|+.+..-    +.+.
T Consensus       167 ~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        167 PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC--cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence            467888873 3577 55543  567999999862  334332323222  122222   2345677774432    4577


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeeeCC---eEEEeCCCCcEEEEecCC
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d---~~l~aD~~gNl~vl~~~~  303 (415)
                      ++..+....-+..+.-|.....++.  +.|.+   .++++-.+++|+++.+..
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p--~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIP--HYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEE--eeeCCCCCEEEEEECCCeEEEEEccC
Confidence            7665543444444444433222221  22332   577888899999999754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.70  E-value=2.8  Score=42.46  Aligned_cols=138  Identities=14%  Similarity=0.159  Sum_probs=90.3

Q ss_pred             eeEEEEeCCCCcEEEEEeCC-CCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCC
Q 014962           44 SDICCVDPLSGSVLSSFKLE-LGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS  122 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~-~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~  122 (415)
                      .+|-+.|-++++++++++.- +|...+|.-+....+ -|++.=              +..+.|-+++|+....       
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp--------------~s~t~GdV~l~d~~nl-------  163 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYP--------------GSTTSGDVVLFDTINL-------  163 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEec--------------CCCCCceEEEEEcccc-------
Confidence            45889999999999999977 888877765553333 466532              2356899999999941       


Q ss_pred             ccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEe-eeCCceEE
Q 014962          123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAIC-PYLDRYFL  201 (415)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~-~~~g~yLl  201 (415)
                                                         +                 ....++  --+|++-||+ ...|. ||
T Consensus       164 -----------------------------------~-----------------~v~~I~--aH~~~lAalafs~~G~-ll  188 (391)
T KOG2110|consen  164 -----------------------------------Q-----------------PVNTIN--AHKGPLAALAFSPDGT-LL  188 (391)
T ss_pred             -----------------------------------e-----------------eeeEEE--ecCCceeEEEECCCCC-EE
Confidence                                               1                 122232  3467888887 55688 66


Q ss_pred             EEeCC---eEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcEEEEEEEcc
Q 014962          202 ASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       202 ~~vg~---~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      |....   -++||....  .+++....-.-.+..|.+|.-  ...++.+.---+.|.+++.+..
T Consensus       189 ATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  189 ATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            65433   378998865  344433222222445666653  5668888888899999988653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=95.62  E-value=0.14  Score=53.09  Aligned_cols=206  Identities=16%  Similarity=0.163  Sum_probs=115.0

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC--CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCC
Q 014962           44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVG--HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCG  121 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~--~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~  121 (415)
                      ..|+|.|-.|+.++.+|.+  ++.+.|+   +|.  +...+++|++                .|+|+-|++..       
T Consensus       280 ~~lKlwDtETG~~~~~f~~--~~~~~cv---kf~pd~~n~fl~G~s----------------d~ki~~wDiRs-------  331 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFHL--DKVPTCV---KFHPDNQNIFLVGGS----------------DKKIRQWDIRS-------  331 (503)
T ss_pred             eeeeeeccccceEEEEEec--CCCceee---ecCCCCCcEEEEecC----------------CCcEEEEeccc-------
Confidence            4799999999999887665  4555544   443  3478888977                67999999983       


Q ss_pred             CccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEe-cCCceEEEeeeC-Cce
Q 014962          122 SMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTT-WPGMVLAICPYL-DRY  199 (415)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~-~~g~V~al~~~~-g~y  199 (415)
                                        .+||+                                     +.+ -=|+|..|.=+. |++
T Consensus       332 ------------------~kvvq-------------------------------------eYd~hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  332 ------------------GKVVQ-------------------------------------EYDRHLGAILDITFVDEGRR  356 (503)
T ss_pred             ------------------hHHHH-------------------------------------HHHhhhhheeeeEEccCCce
Confidence                              12332                                     111 125566666442 454


Q ss_pred             EEEEeCC-eEEEEeeCCCCccceeeeeeecc-ceEEEEEEE---------eCCEEEEeecCCcEEEEEEEccCCeEEEEe
Q 014962          200 FLASAGN-AFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTA---------HFTRIAVGDCRDGILFYSYHEDARKLEQIY  268 (415)
Q Consensus       200 Ll~~vg~-~l~v~~~~~~~~~~L~~~a~~~~-~~~i~sI~~---------~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va  268 (415)
                      ++.+.-. .+++|+|+..-  .++-.+...+ .+..+.+..         .+|+|++=-     ...+|+.  ++-..+.
T Consensus       357 FissSDdks~riWe~~~~v--~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs-----~~~~~r~--nkkK~fe  427 (503)
T KOG0282|consen  357 FISSSDDKSVRIWENRIPV--PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS-----TVPPFRL--NKKKRFE  427 (503)
T ss_pred             EeeeccCccEEEEEcCCCc--cchhhcchhhccCcceecCCCCCeehhhccCceEEEEe-----ccccccc--CHhhhhc
Confidence            6666554 48999998632  1221111111 112333333         345555411     1122221  1112233


Q ss_pred             cCCCcceeEEEEe-eeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCcccc
Q 014962          269 CDPSQRLVADCVL-MDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGD  347 (415)
Q Consensus       269 rD~~~~~vta~~~-Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~  347 (415)
                      ....+..-+.+.| .|.++++.+|.+|+++++....         .+|.....-|- +.++..    .  ..|       
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt---------~kl~~~lkah~-~~ci~v----~--wHP-------  484 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT---------TKLVSKLKAHD-QPCIGV----D--WHP-------  484 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCCccEEEeechh---------hhhhhccccCC-cceEEE----E--ecC-------
Confidence            3444445566666 4667999999999999999765         35655555552 222222    1  122       


Q ss_pred             ccccCCCCCceEEEEeCCcceEE
Q 014962          348 CLASFESSQTTIIASTLLGSIVI  370 (415)
Q Consensus       348 ~~~~~~~~~~~ily~T~~GsIG~  370 (415)
                            .....++-++.+|.|-+
T Consensus       485 ------~e~Skvat~~w~G~Iki  501 (503)
T KOG0282|consen  485 ------VEPSKVATCGWDGLIKI  501 (503)
T ss_pred             ------CCcceeEecccCceeEe
Confidence                  22345777778887754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.58  E-value=3.6  Score=42.93  Aligned_cols=191  Identities=12%  Similarity=0.111  Sum_probs=119.5

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe-EEEEEEEEECCeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET-GKSMELVRVGHEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~-~~si~~~~l~~~~~lvVGT~~~~~~~~~   95 (415)
                      ..+.+-|+|..++..+.++|..      .+++.|..+..+  .+++...|- +-|. .|.-.++.+++-|.-        
T Consensus       112 pv~~~~f~~~d~t~l~s~sDd~------v~k~~d~s~a~v--~~~l~~htDYVR~g-~~~~~~~hivvtGsY--------  174 (487)
T KOG0310|consen  112 PVHVTKFSPQDNTMLVSGSDDK------VVKYWDLSTAYV--QAELSGHTDYVRCG-DISPANDHIVVTGSY--------  174 (487)
T ss_pred             ceeEEEecccCCeEEEecCCCc------eEEEEEcCCcEE--EEEecCCcceeEee-ccccCCCeEEEecCC--------
Confidence            4567778888888888887763      477777776664  567666654 4443 333345556665522        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              -|.|-+|+....                                                        + .+
T Consensus       175 --------Dg~vrl~DtR~~--------------------------------------------------------~-~~  189 (487)
T KOG0310|consen  175 --------DGKVRLWDTRSL--------------------------------------------------------T-SR  189 (487)
T ss_pred             --------CceEEEEEeccC--------------------------------------------------------C-ce
Confidence                    467888888830                                                        0 12


Q ss_pred             eEEEEEEEecCCceEEEeeeCC-ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcE
Q 014962          176 QLRLAYSTTWPGMVLAICPYLD-RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGI  252 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~~g-~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv  252 (415)
                          +.+.+-.-||-.|+.+.+ ..++.|-|+.+.||++-..+ +++.....+..  .+++|..  .+.+++-|-+-+=|
T Consensus       190 ----v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~-qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~~V  262 (487)
T KOG0310|consen  190 ----VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG-QLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDRHV  262 (487)
T ss_pred             ----eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc-eehhhhhcccc--eEEEEEeecCCceEeecccccce
Confidence                334455567888888876 52445678889999998543 55555343333  4666655  45789999888888


Q ss_pred             EEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEe
Q 014962          253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLS  300 (415)
Q Consensus       253 ~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~  300 (415)
                      -++.+.  ..+.+  -.=-.|..+.++..-+++ +++.+=.+|-+++-+
T Consensus       263 KVfd~t--~~Kvv--~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  263 KVFDTT--NYKVV--HSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             EEEEcc--ceEEE--EeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence            776632  33333  222345567777766554 677766677666554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=95.44  E-value=4.2  Score=42.84  Aligned_cols=200  Identities=11%  Similarity=0.127  Sum_probs=119.8

Q ss_pred             EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCC
Q 014962           12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSS   90 (415)
Q Consensus        12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~   90 (415)
                      .-+.+-.+...+||.. .+++.+.       ..-.-++|-.+-.++. +.-+ ||.++++   ++. +..|++||+.   
T Consensus       404 ~~~~d~~~~~~fhpsg-~va~Gt~-------~G~w~V~d~e~~~lv~-~~~d-~~~ls~v---~ysp~G~~lAvgs~---  467 (626)
T KOG2106|consen  404 KIIEDPAECADFHPSG-VVAVGTA-------TGRWFVLDTETQDLVT-IHTD-NEQLSVV---RYSPDGAFLAVGSH---  467 (626)
T ss_pred             EEecCceeEeeccCcc-eEEEeec-------cceEEEEecccceeEE-EEec-CCceEEE---EEcCCCCEEEEecC---
Confidence            3445666777788877 6666542       2346678887755555 3444 8887654   443 4589999977   


Q ss_pred             CCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccc
Q 014962           91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE  170 (415)
Q Consensus        91 ~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~  170 (415)
                                   -+.||+|+++.                                                        
T Consensus       468 -------------d~~iyiy~Vs~--------------------------------------------------------  478 (626)
T KOG2106|consen  468 -------------DNHIYIYRVSA--------------------------------------------------------  478 (626)
T ss_pred             -------------CCeEEEEEECC--------------------------------------------------------
Confidence                         35799999993                                                        


Q ss_pred             ccccceEEEEEEEecCCceEEEe-eeCCceEEEEeCCeEEEEeeCCCCccceee---e--eeec--cce-----------
Q 014962          171 ETETWQLRLAYSTTWPGMVLAIC-PYLDRYFLASAGNAFYVCGFPNDNPQRVRR---F--AVGR--TRF-----------  231 (415)
Q Consensus       171 ~~~~~~L~l~~~~~~~g~V~al~-~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~---~--a~~~--~~~-----------  231 (415)
                        +++++..+.+..- .+++++. +.++. .+.+....-.+.-|.....+..+.   +  +.+.  ..|           
T Consensus       479 --~g~~y~r~~k~~g-s~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i  554 (626)
T KOG2106|consen  479 --NGRKYSRVGKCSG-SPITHLDWSSDSQ-FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDI  554 (626)
T ss_pred             --CCcEEEEeeeecC-ceeEEeeecCCCc-eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchH
Confidence              1357777777766 8899888 44566 455544443444443211111111   0  1100  011           


Q ss_pred             EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEe
Q 014962          232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLS  300 (415)
Q Consensus       232 ~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~  300 (415)
                      .+++-...++.+.+||-.--|.+++|-=..-+-.-.-.-...+.++++.|+-+| .+++.-++-.|+..+
T Consensus       555 ~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  555 NAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             HHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence            122233356889999999999999985433222222223457789999999776 556555666666554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.33  E-value=2.2  Score=46.74  Aligned_cols=193  Identities=13%  Similarity=0.208  Sum_probs=120.5

Q ss_pred             EEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCC
Q 014962           20 KVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGE   99 (415)
Q Consensus        20 ~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e   99 (415)
                      .++|+|++..++.++.|       +.|++-|-.++-++.+|.    |+-.++..+.|.....+++..+.           
T Consensus       355 ~l~YSpDgq~iaTG~eD-------gKVKvWn~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSL-----------  412 (893)
T KOG0291|consen  355 SLAYSPDGQLIATGAED-------GKVKVWNTQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSL-----------  412 (893)
T ss_pred             eEEECCCCcEEEeccCC-------CcEEEEeccCceEEEEec----cCCCceEEEEEEecCCEEEEeec-----------
Confidence            45566665555555433       348888887777776654    44445566666655556666553           


Q ss_pred             ccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEE
Q 014962          100 AESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRL  179 (415)
Q Consensus       100 ~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l  179 (415)
                          -|++-.|++.+-                -..|++     .              .|.               ..++
T Consensus       413 ----DGtVRAwDlkRY----------------rNfRTf-----t--------------~P~---------------p~Qf  438 (893)
T KOG0291|consen  413 ----DGTVRAWDLKRY----------------RNFRTF-----T--------------SPE---------------PIQF  438 (893)
T ss_pred             ----CCeEEeeeeccc----------------ceeeee-----c--------------CCC---------------ceee
Confidence                478888988841                112222     1              121               1111


Q ss_pred             EEEEecCCceEEEeeeCCceEEEEeCCe---EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEE
Q 014962          180 AYSTTWPGMVLAICPYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYS  256 (415)
Q Consensus       180 ~~~~~~~g~V~al~~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~  256 (415)
                      .        ..|+. -.|. |++|-++.   ++||+++.  .++|-..+-+..|..-.++...++.++-|---+-|-++.
T Consensus       439 s--------cvavD-~sGe-lV~AG~~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  439 S--------CVAVD-PSGE-LVCAGAQDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             e--------EEEEc-CCCC-EEEeeccceEEEEEEEeec--CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            1        11222 2366 66555554   67888886  477877788888888888999999888888888887765


Q ss_pred             EEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          257 YHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       257 y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      .=...++-+.+.   ....++++.|- |.+.++++.-+|+|-++...+
T Consensus       507 if~s~~~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  507 IFSSSGTVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             eeccCceeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            544444444432   23457777775 567999999999999998544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.29  E-value=6.5  Score=44.15  Aligned_cols=112  Identities=6%  Similarity=0.008  Sum_probs=60.8

Q ss_pred             CCceEEEee--eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEEccC
Q 014962          186 PGMVLAICP--YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       186 ~g~V~al~~--~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      .+.|.++.-  -.|.+|++| ..+.|++|++.... ..+.....+.  ..|.++.. .+++|+.|..-..+.++..+...
T Consensus       617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~--~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHS--KTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCC--CCEEEEEEeCCCEEEEEECCCEEEEEeCCCCc
Confidence            456666653  246645544 34568999997531 1122212122  23444443 46788888777778777654321


Q ss_pred             -----CeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962          262 -----RKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       262 -----~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~  302 (415)
                           ..+..+..  ...++.++.+- +...++++..+|.++++...
T Consensus       694 ~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        694 SGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             cccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence                 12222222  22334444443 34467778889999998853

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.25  E-value=6.1  Score=43.54  Aligned_cols=123  Identities=13%  Similarity=0.142  Sum_probs=87.9

Q ss_pred             EEEEEecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceee---eeeeccce-EEEEEEEeC--CEEEEeecCCc
Q 014962          179 LAYSTTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRR---FAVGRTRF-MIMLLTAHF--TRIAVGDCRDG  251 (415)
Q Consensus       179 l~~~~~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~---~a~~~~~~-~i~sI~~~~--n~IlVGD~~~S  251 (415)
                      .+|...++.+|.||+-- +|+.+++++|+-+.+|......+..+-.   ...+..++ -|++|+-..  +++++|---.+
T Consensus        89 Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s  168 (893)
T KOG0291|consen   89 VLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLS  168 (893)
T ss_pred             eeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccce
Confidence            36778899999999944 5675888999999999887521101111   01112222 588887533  46677777778


Q ss_pred             EEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962          252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       252 v~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~  302 (415)
                      +.++..+..++ |...+-..+.-.|.+|.|-.+. .+...-++|-|+++.++
T Consensus       169 ~rl~~v~~~k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~  219 (893)
T KOG0291|consen  169 ARLFGVDGNKN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCD  219 (893)
T ss_pred             EEEEEeccccc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence            88888877666 7777777788899999987554 78888899999999877

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=94.75  E-value=5.4  Score=41.31  Aligned_cols=101  Identities=10%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             CCceEEEe-eeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeec-cceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          186 PGMVLAIC-PYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       186 ~g~V~al~-~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~-~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      .|+|.+|. .-||+||+++.... |.+|++++.  +.++....-+ .+...++++..|.++.++  -.++.++.|+...+
T Consensus       389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k  464 (506)
T KOG0289|consen  389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKTK  464 (506)
T ss_pred             CCceeEEEeccCceEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCCeEEee--cceeEEEEEecccc
Confidence            47788887 45789899999888 999999873  2333322211 134566667778888888  78899999986654


Q ss_pred             eEEEEecCCCc-ceeEEEEeeeCCeEEEe
Q 014962          263 KLEQIYCDPSQ-RLVADCVLMDVDTAVVS  290 (415)
Q Consensus       263 ~L~~varD~~~-~~vta~~~Ld~d~~l~a  290 (415)
                      +-.++---... ...+.+.|=+...+++.
T Consensus       465 ~W~~~~~~~~~sg~st~v~Fg~~aq~l~s  493 (506)
T KOG0289|consen  465 SWTEIKELADHSGLSTGVRFGEHAQYLAS  493 (506)
T ss_pred             cceeeehhhhcccccceeeecccceEEee
Confidence            33333222222 23445555444555444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=94.70  E-value=2.7  Score=45.45  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=69.3

Q ss_pred             CCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCC
Q 014962          196 LDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPS  272 (415)
Q Consensus       196 ~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~  272 (415)
                      +++.++++.+.. +.++++...+.+.|..+..--..-.|..|.+  +|++|++.+...-+++  |+-++.+...+.-++.
T Consensus       440 ~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v--~nl~~~~~~~l~~rln  517 (691)
T KOG2048|consen  440 KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFV--YNLETLESHLLKVRLN  517 (691)
T ss_pred             CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEE--EEcccceeecchhccC
Confidence            345244453332 5566665544344544333322225666654  8999999996666644  5566777778877777


Q ss_pred             cceeEEEEee--eCCeEEEeCCCCcEEEEecC
Q 014962          273 QRLVADCVLM--DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       273 ~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~  302 (415)
                       ..+||+.+-  +..+++++++++-++-+..+
T Consensus       518 -~~vTa~~~~~~~~~~lvvats~nQv~efdi~  548 (691)
T KOG2048|consen  518 -IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE  548 (691)
T ss_pred             -cceeeeeccccccCcEEEEecCCeEEEEecc
Confidence             999999987  44699999999999988873

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=94.36  E-value=4.7  Score=38.00  Aligned_cols=66  Identities=14%  Similarity=0.273  Sum_probs=42.2

Q ss_pred             EEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEee
Q 014962           10 RKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGT   86 (415)
Q Consensus        10 ~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT   86 (415)
                      +.++.+..|+.++++|+.+.+++...+      ...|+++|..+.+.+..++..  ..+.+   +.+. +..+++++.
T Consensus        67 ~~~~~~~~~~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~~~~--~~~~~---~~~~~dg~~l~~~~  133 (300)
T TIGR03866        67 GTLPSGPDPELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEIPVG--VEPEG---MAVSPDGKIVVNTS  133 (300)
T ss_pred             EeccCCCCccEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEeeCC--CCcce---EEECCCCCEEEEEe
Confidence            446666778899999998877665422      236999999888877766532  22222   3333 456777664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=93.87  E-value=5.3  Score=39.56  Aligned_cols=167  Identities=15%  Similarity=0.200  Sum_probs=97.3

Q ss_pred             CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCC
Q 014962           40 DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSD  119 (415)
Q Consensus        40 ~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~  119 (415)
                      +.|-..|++.|+.+-..+  ..++.++.|.||.+    ...-|||||+-.                ++++|++..+.   
T Consensus       112 gsWD~~ik~wD~R~~~~~--~~~d~~kkVy~~~v----~g~~LvVg~~~r----------------~v~iyDLRn~~---  166 (323)
T KOG1036|consen  112 GSWDKTIKFWDPRNKVVV--GTFDQGKKVYCMDV----SGNRLVVGTSDR----------------KVLIYDLRNLD---  166 (323)
T ss_pred             cccCccEEEEeccccccc--cccccCceEEEEec----cCCEEEEeecCc----------------eEEEEEccccc---
Confidence            468889999999863333  35666778777766    457889999833                68999998420   


Q ss_pred             CCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeC--C
Q 014962          120 CGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL--D  197 (415)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~--g  197 (415)
                                                            .|                  ....+..++-.+.+|+-+.  +
T Consensus       167 --------------------------------------~~------------------~q~reS~lkyqtR~v~~~pn~e  190 (323)
T KOG1036|consen  167 --------------------------------------EP------------------FQRRESSLKYQTRCVALVPNGE  190 (323)
T ss_pred             --------------------------------------ch------------------hhhccccceeEEEEEEEecCCC
Confidence                                                  01                  0122233444556666554  3


Q ss_pred             ceEEEEeCCeEEEEeeCCCCccceeeeeeeccc---------eEEEEEEE--eCCEEEEeecCCcEEEEEEEcc-CCeEE
Q 014962          198 RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR---------FMIMLLTA--HFTRIAVGDCRDGILFYSYHED-ARKLE  265 (415)
Q Consensus       198 ~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~---------~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~-~~~L~  265 (415)
                      .|.+-++-.+|.|=-+..+..-.-++.+|-..+         ..+.+|..  .-++.+-|+.- |+ +..|+.. .++|.
T Consensus       191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD-G~-V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD-GI-VNIWDLFNRKRLK  268 (323)
T ss_pred             ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC-ce-EEEccCcchhhhh
Confidence            447778888888766654311113344443222         13444432  33445555543 44 4667765 46889


Q ss_pred             EEecCCCcceeEEEEeeeC-CeEEEeC
Q 014962          266 QIYCDPSQRLVADCVLMDV-DTAVVSD  291 (415)
Q Consensus       266 ~varD~~~~~vta~~~Ld~-d~~l~aD  291 (415)
                      +++++  +..+.+..|=++ ..+..|+
T Consensus       269 q~~~~--~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  269 QLAKY--ETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             hccCC--CCceEEEEeccCCCeEEEEe
Confidence            99998  555666666433 3444443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.75  E-value=6.8  Score=40.78  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             EEecCCceEEEeeeC-CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeC
Q 014962          182 STTWPGMVLAICPYL-DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF  240 (415)
Q Consensus       182 ~~~~~g~V~al~~~~-g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~  240 (415)
                      ..-.+|+|.||...+ |.||+++ +-.+||+|.+..  ..+|....-+.  =.|++|+..+
T Consensus        77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~~aHY--Q~ITcL~fs~  133 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS--GILLNVLSAHY--QSITCLKFSD  133 (476)
T ss_pred             hcccccceeeeecCCCceEEEeecccCcEEEEEecc--ccHHHHHHhhc--cceeEEEEeC
Confidence            455799999999886 5667777 888999999986  34555432111  1477776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=93.40  E-value=1.6  Score=45.01  Aligned_cols=55  Identities=9%  Similarity=0.027  Sum_probs=36.0

Q ss_pred             cceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962           41 TCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH  114 (415)
Q Consensus        41 ~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~  114 (415)
                      ..-+.|++.|-.+...+.  .|+.++..  +..+.|...-|..+-++.               .|.+.+|++.+
T Consensus       366 t~d~~vkiwdlks~~~~a--~Fpght~~--vk~i~FsENGY~Lat~ad---------------d~~V~lwDLRK  420 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNVA--KFPGHTGP--VKAISFSENGYWLATAAD---------------DGSVKLWDLRK  420 (506)
T ss_pred             CCCceEEEEEcCCccccc--cCCCCCCc--eeEEEeccCceEEEEEec---------------CCeEEEEEehh
Confidence            445779999998777555  56664443  578888865554443331               35588899884

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.34  E-value=1.8  Score=47.58  Aligned_cols=141  Identities=11%  Similarity=0.104  Sum_probs=85.6

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCc
Q 014962           44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM  123 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~  123 (415)
                      ..+||-+-...++++=.++.  |.|+++|..  .+.++.||||-                .|..++|....-        
T Consensus       432 ~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~--PdGk~avIGt~----------------~G~C~fY~t~~l--------  483 (712)
T KOG0283|consen  432 GKVRLWSISDKKVVDWNDLR--DLITAVCYS--PDGKGAVIGTF----------------NGYCRFYDTEGL--------  483 (712)
T ss_pred             cceEEeecCcCeeEeehhhh--hhheeEEec--cCCceEEEEEe----------------ccEEEEEEccCC--------
Confidence            45888887777788766666  888877654  45689999987                567777776620        


Q ss_pred             cccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCc-eEEEeeeCC---ce
Q 014962          124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGM-VLAICPYLD---RY  199 (415)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~-V~al~~~~g---~y  199 (415)
                                       ..+                           .  .+.+.+--.+...+. |+++.-+.|   +.
T Consensus       484 -----------------k~~---------------------------~--~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~v  517 (712)
T KOG0283|consen  484 -----------------KLV---------------------------S--DFHIRLHNKKKKQGKRITGLQFFPGDPDEV  517 (712)
T ss_pred             -----------------eEE---------------------------E--eeeEeeccCccccCceeeeeEecCCCCCeE
Confidence                             000                           0  112222223333344 888876644   53


Q ss_pred             EEEEeCCeEEEEeeCCCCccceeee-eeeccce-EEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962          200 FLASAGNAFYVCGFPNDNPQRVRRF-AVGRTRF-MIMLLTAHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       200 Ll~~vg~~l~v~~~~~~~~~~L~~~-a~~~~~~-~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      ||.+.-++|++|+...  .+++.+. .+..+.. .--++...|.+|+.|---..|++++++..
T Consensus       518 LVTSnDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  518 LVTSNDSRIRIYDGRD--KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EEecCCCceEEEeccc--hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            4455667899999965  2333332 2333333 23345558999999996667777766443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.30  E-value=3.9  Score=44.37  Aligned_cols=114  Identities=12%  Similarity=0.016  Sum_probs=76.9

Q ss_pred             eEEEEEEEecCCceEEEeeeCCceEEEEeC--------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-e
Q 014962          176 QLRLAYSTTWPGMVLAICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-G  246 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~~g~yLl~~vg--------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-G  246 (415)
                      +...+........-.+++.++|+ |-+.-|        +.+..|+...   ..++..+...++-.-..+.+.+++|++ |
T Consensus       407 ~W~~va~m~~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t---~~W~~~~~M~~~R~~~g~a~~~~~iYvvG  482 (571)
T KOG4441|consen  407 KWTPVAPMLTRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPET---NTWTLIAPMNTRRSGFGVAVLNGKIYVVG  482 (571)
T ss_pred             cccccCCCCcceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCC---CceeecCCcccccccceEEEECCEEEEEC
Confidence            44444444444455566778887 655555        4567888875   346666666555555557788888776 4


Q ss_pred             ec-----CCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCc
Q 014962          247 DC-----RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGS  295 (415)
Q Consensus       247 D~-----~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gN  295 (415)
                      .-     .++  +-+|+++.++-..++.-..+|....+..++..-++++--+|+
T Consensus       483 G~~~~~~~~~--VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  483 GFDGTSALSS--VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             CccCCCccce--EEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence            42     333  588999999999998888888888888888876655544443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=93.15  E-value=3.7  Score=37.94  Aligned_cols=83  Identities=13%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             ceeEEEEeCCC--ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEE
Q 014962            6 RLNVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVL   82 (415)
Q Consensus         6 ~~~i~~i~L~~--tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~l   82 (415)
                      .-++..++|..  ..+.++++|.++.++|+....     ...+.|+|.+ .+.+..  |.. ....+   +.+. +..++
T Consensus        48 ~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----~~~v~lyd~~-~~~i~~--~~~-~~~n~---i~wsP~G~~l  115 (194)
T PF08662_consen   48 NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----PAKVTLYDVK-GKKIFS--FGT-QPRNT---ISWSPDGRFL  115 (194)
T ss_pred             CCccceeeccCCCceEEEEECcCCCEEEEEEccC-----CcccEEEcCc-ccEeEe--ecC-CCceE---EEECCCCCEE
Confidence            35677788864  589999999999998886322     2369999986 454444  332 23332   3343 55788


Q ss_pred             EEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        83 vVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      ++|..-+             ..|.|.+|++.
T Consensus       116 ~~~g~~n-------------~~G~l~~wd~~  133 (194)
T PF08662_consen  116 VLAGFGN-------------LNGDLEFWDVR  133 (194)
T ss_pred             EEEEccC-------------CCcEEEEEECC
Confidence            8875422             35889998887

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=93.11  E-value=2  Score=47.97  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=27.9

Q ss_pred             eCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEE
Q 014962           13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS   58 (415)
Q Consensus        13 ~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~   58 (415)
                      ++.+....|.|+|..+.++|+..+       +.|+++|-.++.+..
T Consensus       136 gh~apVl~l~~~p~~~fLAvss~d-------G~v~iw~~~~~~~~~  174 (933)
T KOG1274|consen  136 GHDAPVLQLSYDPKGNFLAVSSCD-------GKVQIWDLQDGILSK  174 (933)
T ss_pred             ccCCceeeeeEcCCCCEEEEEecC-------ceEEEEEcccchhhh
Confidence            445677788889988888888644       348888877766443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=2.1  Score=42.32  Aligned_cols=83  Identities=14%  Similarity=0.247  Sum_probs=63.1

Q ss_pred             eEEEEeCCC----ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEE
Q 014962            8 NVRKFHLGG----TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLV   83 (415)
Q Consensus         8 ~i~~i~L~~----tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lv   83 (415)
                      |-+++.+..    .-..|-|+|++|++.+.+.       .+.+.++|.-+++++.++++.+++--..+..+.-.+.+||+
T Consensus       176 PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-------~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl  248 (311)
T KOG1446|consen  176 PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-------ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL  248 (311)
T ss_pred             CceeEccCCCCccceeeeEEcCCCCEEEEEeC-------CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence            444455552    4467889999999887753       45699999999999999999999886665444446778888


Q ss_pred             EeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           84 VGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        84 VGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      .|.                ..|||++|.+.
T Consensus       249 ~gs----------------~dg~i~vw~~~  262 (311)
T KOG1446|consen  249 SGS----------------DDGTIHVWNLE  262 (311)
T ss_pred             Eec----------------CCCcEEEEEcC
Confidence            773                26899999997

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=92.94  E-value=11  Score=39.93  Aligned_cols=123  Identities=12%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             eEEEEEEEecCC---ceEEEeeeC--CceEEEE-eCCeEEEEeeCCCC--ccceeeeeeeccceEEEEEE--EeCCEEEE
Q 014962          176 QLRLAYSTTWPG---MVLAICPYL--DRYFLAS-AGNAFYVCGFPNDN--PQRVRRFAVGRTRFMIMLLT--AHFTRIAV  245 (415)
Q Consensus       176 ~L~l~~~~~~~g---~V~al~~~~--g~yLl~~-vg~~l~v~~~~~~~--~~~L~~~a~~~~~~~i~sI~--~~~n~IlV  245 (415)
                      +++.+......|   +|++ |.|+  |+.+.+| ....|.+|+.+.-.  .....+ ..+..+.-|++|.  ..|++++-
T Consensus       304 q~qVik~k~~~g~Rv~~ts-C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTS-CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-DAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             heeEEeeccCCCcccCcee-eecCCCcchhhhcccCCceeeeecCCcccccceEee-eccCCCCceeEEEeccccchhhh
Confidence            444444333332   3444 5563  5623344 44568999986411  111222 2233334567766  35666666


Q ss_pred             eecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEE-------eCCCCcEEEEe
Q 014962          246 GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVV-------SDRKGSIAVLS  300 (415)
Q Consensus       246 GD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~-------aD~~gNl~vl~  300 (415)
                      =---.++-++..+.-+.-|...-.=+.+.-.+.|.|--++.+|.       ++..|+|++|.
T Consensus       382 Rg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d  443 (641)
T KOG0772|consen  382 RGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD  443 (641)
T ss_pred             ccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence            55566787877776666665555556666778888865543333       36678888887

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.89  E-value=5.8  Score=36.63  Aligned_cols=98  Identities=10%  Similarity=-0.012  Sum_probs=57.0

Q ss_pred             CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccce----------EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeE
Q 014962          196 LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRF----------MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKL  264 (415)
Q Consensus       196 ~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~----------~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L  264 (415)
                      ++. ++++. +..|+.++.+..  +.+-.... ..+.          ....+...++.|++++....  ++.++...++.
T Consensus       122 ~~~-~~~~~~~g~l~~~d~~tG--~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--~~~~d~~tg~~  195 (238)
T PF13360_consen  122 GDR-LYVGTSSGKLVALDPKTG--KLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR--VVAVDLATGEK  195 (238)
T ss_dssp             TTE-EEEEETCSEEEEEETTTT--EEEEEEES-STT-SS--EEEETTEEEEEECCTTEEEEECCTSS--EEEEETTTTEE
T ss_pred             cCE-EEEEeccCcEEEEecCCC--cEEEEeec-CCCCCCcceeeecccccceEEECCEEEEEcCCCe--EEEEECCCCCE
Confidence            445 77776 788888888752  23222222 2211          12333444668888776665  35557777764


Q ss_pred             EEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          265 EQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       265 ~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      . -.++  .....+.-..+++.+++.+++|+|++++..
T Consensus       196 ~-w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  196 L-WSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             E-EEEC--SS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred             E-EEec--CCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence            4 3333  223334344577788777799999999854

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.84  E-value=11  Score=37.68  Aligned_cols=92  Identities=12%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             eEEEe-eeCCceEEEEe--CCeEEEEeeCCCCccceeeeeeecc---ceEEEEEEEeCCEEEEeecC-CcEEEEEEEccC
Q 014962          189 VLAIC-PYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRT---RFMIMLLTAHFTRIAVGDCR-DGILFYSYHEDA  261 (415)
Q Consensus       189 V~al~-~~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~---~~~i~sI~~~~n~IlVGD~~-~Sv~ll~y~~~~  261 (415)
                      ..+|. .=.|++|.++.  .+.|.+|++...+ ..|+......+   ...-..+...|++++|++-. ..|.+++.+++.
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~-g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPAT-GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTT-TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCC-CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            34444 23577677764  4569999995432 24554444332   12344445589999999854 589999999999


Q ss_pred             CeEEEEecCCCcceeEEEEe
Q 014962          262 RKLEQIYCDPSQRLVADCVL  281 (415)
Q Consensus       262 ~~L~~varD~~~~~vta~~~  281 (415)
                      +.|..+++...--..+|+.|
T Consensus       326 G~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  326 GKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TEEEEEEEEEESSSEEEEEE
T ss_pred             CcEEEecccccCCCCEEEeC
Confidence            99999987654444555544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.81  E-value=7.1  Score=39.36  Aligned_cols=138  Identities=14%  Similarity=0.191  Sum_probs=81.8

Q ss_pred             eeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCC----CcEEEEEeCCC-C-CeEEEEEEEEEC-Ce
Q 014962            7 LNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS----GSVLSSFKLEL-G-ETGKSMELVRVG-HE   79 (415)
Q Consensus         7 ~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t----~~~i~s~~l~~-~-E~~~si~~~~l~-~~   79 (415)
                      ...-.++=|.=||+|++||..+...+++      +-.|.|.+..-+.    ++.++.+..-| + .--.....+.+. +.
T Consensus       182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~------EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG  255 (346)
T COG2706         182 ADPAEVKPGAGPRHIVFHPNGKYAYLVN------ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG  255 (346)
T ss_pred             ccccccCCCCCcceEEEcCCCcEEEEEe------ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence            3444567778999999999999776664      3345555543322    33444444222 2 111223333333 45


Q ss_pred             eEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCC
Q 014962           80 QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSP  159 (415)
Q Consensus        80 ~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  159 (415)
                      +||.+.--          +-|     .|-+|.+..                                             
T Consensus       256 rFLYasNR----------g~d-----sI~~f~V~~---------------------------------------------  275 (346)
T COG2706         256 RFLYASNR----------GHD-----SIAVFSVDP---------------------------------------------  275 (346)
T ss_pred             CEEEEecC----------CCC-----eEEEEEEcC---------------------------------------------
Confidence            78776522          212     788888882                                             


Q ss_pred             CCCCCCCccccccccceEEEEEEEecCCc-eEEEe-eeCCceEEEEeCCe---EEEEeeCCCCccceeeee
Q 014962          160 DDASCDGIKLEETETWQLRLAYSTTWPGM-VLAIC-PYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFA  225 (415)
Q Consensus       160 ~~~~~~g~~~~~~~~~~L~l~~~~~~~g~-V~al~-~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a  225 (415)
                      +             +-+|.++..++..|- +.... .-.|+ +|++.|++   |.+|+..... ..|.++.
T Consensus       276 ~-------------~g~L~~~~~~~teg~~PR~F~i~~~g~-~Liaa~q~sd~i~vf~~d~~T-G~L~~~~  331 (346)
T COG2706         276 D-------------GGKLELVGITPTEGQFPRDFNINPSGR-FLIAANQKSDNITVFERDKET-GRLTLLG  331 (346)
T ss_pred             C-------------CCEEEEEEEeccCCcCCccceeCCCCC-EEEEEccCCCcEEEEEEcCCC-ceEEecc
Confidence            2             127999988888887 55544 22367 66666665   8999998753 3455533

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=92.70  E-value=0.58  Score=47.11  Aligned_cols=64  Identities=9%  Similarity=-0.026  Sum_probs=41.2

Q ss_pred             EEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE
Q 014962          180 AYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV  245 (415)
Q Consensus       180 ~~~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV  245 (415)
                      .|..+.+.+|+.+.-.+..||++| ++.+|+.|+-+.  .+++-.+--+..+++--.+...+++|+-
T Consensus       321 R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt--G~l~~~y~GH~~~Il~f~ls~~~~~vvT  385 (399)
T KOG0296|consen  321 RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART--GQLKFTYTGHQMGILDFALSPQKRLVVT  385 (399)
T ss_pred             heeccCCCceEEEEEcCcchheeeccCceEEeeeccc--cceEEEEecCchheeEEEEcCCCcEEEE
Confidence            344666777999998876667765 667788888765  2444444444455555566666776654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=92.48  E-value=1.5  Score=44.98  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS   87 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~   87 (415)
                      .+.+|++.-...+-..++..-+... ++.      -.+.++|-.++++...|.-+.+-...-..-+.|. +..|++-|.+
T Consensus       335 ~~sv~~gg~vtSl~ls~~g~~lLss-sRD------dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  335 TRSVPLGGRVTSLDLSMDGLELLSS-SRD------DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             eeEeecCcceeeEeeccCCeEEeee-cCC------CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence            4567777766666655554333333 322      2489999999999988886665555545555664 6799999955


Q ss_pred             cCCCCCCCCCCCccccccEEEEEEEE
Q 014962           88 LSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        88 ~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                                      -|++++|.+.
T Consensus       408 ----------------dgsv~iW~v~  417 (459)
T KOG0288|consen  408 ----------------DGSVYIWSVF  417 (459)
T ss_pred             ----------------CCcEEEEEcc
Confidence                            7899999998

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=92.36  E-value=6.5  Score=39.28  Aligned_cols=63  Identities=13%  Similarity=0.161  Sum_probs=35.8

Q ss_pred             eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          239 HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       239 ~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      .|.||+.|.. +-=.++.|...-+.|+.+=--...-....+.-=-...+|.+=..|++++....
T Consensus       260 dgeYv~a~s~-~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  260 DGEYVCAGSA-RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV  322 (405)
T ss_pred             CccEEEeccc-cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence            5678888874 33446778787888876633222111111111011356777789998888743

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=92.35  E-value=1.6  Score=42.26  Aligned_cols=112  Identities=11%  Similarity=0.125  Sum_probs=66.9

Q ss_pred             CceEEEeeeC-CceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEE
Q 014962          187 GMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLE  265 (415)
Q Consensus       187 g~V~al~~~~-g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~  265 (415)
                      +-|.+++--. +++|++|.+++|++|++...+..-+........+..++.....|-..+-|----.+-++..+.     -
T Consensus        41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-----~  115 (311)
T KOG0315|consen   41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-----L  115 (311)
T ss_pred             cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-----c
Confidence            3455544322 344888899999999998654333444444444556666666666666655444444443332     2


Q ss_pred             EEecCCCcceeEEEEeee--CCeEEEeCCCCcEEEEecCC
Q 014962          266 QIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       266 ~varD~~~~~vta~~~Ld--~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ..-|.+..........|.  ...+|++|..|||++..+-.
T Consensus       116 ~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~  155 (311)
T KOG0315|consen  116 SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE  155 (311)
T ss_pred             ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence            223444433333444444  34899999999999998654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=92.17  E-value=0.71  Score=47.72  Aligned_cols=106  Identities=10%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             EEeeeCCceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccCCeEEE
Q 014962          191 AICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDARKLEQ  266 (415)
Q Consensus       191 al~~~~g~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~  266 (415)
                      ++..+++.||++|.-.+  |.+|.|.+.  .++..  ....|-.+..|.  ..|.+++.|.+...++++...  .+.|.-
T Consensus        44 sl~~l~~~yllsaq~~rp~l~vw~i~k~--~~~~q--~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~  117 (476)
T KOG0646|consen   44 SLTALNNEYLLSAQLKRPLLHVWEILKK--DQVVQ--YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLN  117 (476)
T ss_pred             hhhhhchhheeeecccCccccccccCch--hhhhh--hcccccceeeeecCCCceEEEeecccCcEEEEEec--cccHHH
Confidence            34445566688876655  788998862  22332  222333455554  478899999999999888765  455543


Q ss_pred             EecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962          267 IYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       267 varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~  303 (415)
                      +- +.+-..+|++.|.|++ .++.+-++|-++++.+-.
T Consensus       118 v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen  118 VL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             HH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence            33 6677789999998776 788889999999998533

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=2.9  Score=42.55  Aligned_cols=135  Identities=9%  Similarity=0.028  Sum_probs=79.3

Q ss_pred             EecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCC--ccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEE
Q 014962          183 TTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDN--PQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       183 ~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~--~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~  258 (415)
                      .--.++|..+...+|. |+.++++. +.+|..+..+  +..|.+.+... +.+.+.-.. ..+.++.|-.-+=.-+=.|+
T Consensus       102 ~l~~~~I~gl~~~dg~-Litc~~sG~l~~~~~k~~d~hss~l~~la~g~-g~~~~r~~~~~p~Iva~GGke~~n~lkiwd  179 (412)
T KOG3881|consen  102 SLGTKSIKGLKLADGT-LITCVSSGNLQVRHDKSGDLHSSKLIKLATGP-GLYDVRQTDTDPYIVATGGKENINELKIWD  179 (412)
T ss_pred             ccccccccchhhcCCE-EEEEecCCcEEEEeccCCccccccceeeecCC-ceeeeccCCCCCceEecCchhcccceeeee
Confidence            4456788888888999 88887765 7888887422  23355556553 444444433 33444445544211122233


Q ss_pred             ccCCeEEEEecCC--------CcceeEEEEeeeCC---eEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccc
Q 014962          259 EDARKLEQIYCDP--------SQRLVADCVLMDVD---TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIA  327 (415)
Q Consensus       259 ~~~~~L~~varD~--------~~~~vta~~~Ld~d---~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~V  327 (415)
                      -++.+=+--|+..        .|.|.+++.||+.+   .|+.+-+.+-+.++.--          ..-.+.++|-+.+.+
T Consensus       180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~----------~qRRPV~~fd~~E~~  249 (412)
T KOG3881|consen  180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR----------HQRRPVAQFDFLENP  249 (412)
T ss_pred             cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc----------ccCcceeEeccccCc
Confidence            3333333333332        47899999999773   78899999988776621          123345666666654


Q ss_pred             cE
Q 014962          328 VS  329 (415)
Q Consensus       328 t~  329 (415)
                      .+
T Consensus       250 is  251 (412)
T KOG3881|consen  250 IS  251 (412)
T ss_pred             ce
Confidence            44

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=91.74  E-value=23  Score=38.63  Aligned_cols=69  Identities=16%  Similarity=0.076  Sum_probs=45.4

Q ss_pred             eEEEEeCCC-ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc-EEEEEeCCCCCeEEEEEEEEECCeeEEEEe
Q 014962            8 NVRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS-VLSSFKLELGETGKSMELVRVGHEQVLVVG   85 (415)
Q Consensus         8 ~i~~i~L~~-tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~-~i~s~~l~~~E~~~si~~~~l~~~~~lvVG   85 (415)
                      .+|.+...- +.+.+||+..++.+||.+++.+       |++.++...+ ..--+..+++-.+.+++-+  ++...+-+|
T Consensus        17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~-------IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g   87 (691)
T KOG2048|consen   17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGN-------IEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSG   87 (691)
T ss_pred             EEEEEeeeccceEEEEEeccCCceeeeccCCc-------EEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeec
Confidence            344443332 4456788888899888876654       8888887765 3455677888888877665  333555444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=91.71  E-value=11  Score=34.80  Aligned_cols=104  Identities=12%  Similarity=0.044  Sum_probs=52.5

Q ss_pred             eeeCCceEEEEe-CCeEEEEeeCCCCccceeeeeee--cc-ceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEe
Q 014962          193 CPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVG--RT-RFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIY  268 (415)
Q Consensus       193 ~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~--~~-~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va  268 (415)
                      ....++ ++++. ++.|+.++... +..+++.....  .. ..........++++++++.-..  ++.++...+++.--.
T Consensus        73 ~~~~~~-v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   73 VVDGGR-VYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK--LVALDPKTGKLLWKY  148 (238)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE--EEEEETTTTEEEEEE
T ss_pred             eecccc-cccccceeeeEecccCC-cceeeeeccccccccccccccCceEecCEEEEEeccCc--EEEEecCCCcEEEEe
Confidence            344566 66554 45677777543 22233311111  01 1123344445899999888444  477788777663222


Q ss_pred             cCCCccee---------EEEEeeeCCeEEEeCCCCcEEEEe
Q 014962          269 CDPSQRLV---------ADCVLMDVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       269 rD~~~~~v---------ta~~~Ld~d~~l~aD~~gNl~vl~  300 (415)
                      .=..+...         .+-..++++.++.++.+|.++.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD  189 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred             ecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence            22222211         223334555778888888755443

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.70  E-value=16  Score=36.61  Aligned_cols=126  Identities=15%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             EEEEEEEecC---CceEEEeeeCCceEEEEeCCe---EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCC
Q 014962          177 LRLAYSTTWP---GMVLAICPYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRD  250 (415)
Q Consensus       177 L~l~~~~~~~---g~V~al~~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~  250 (415)
                      ++++|..+..   -.+.++|+..++.+||.-|.+   |.+-++......-=.....++..+..+.|.-.|.+|. .-..+
T Consensus       124 ~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vA-TaStk  202 (346)
T KOG2111|consen  124 PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVA-TASTK  202 (346)
T ss_pred             hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEE-EeccC
Confidence            4445544443   347777777787788888876   5777776421100011134555555666665666544 34556


Q ss_pred             cEEEEEEEccC-CeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962          251 GILFYSYHEDA-RKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       251 Sv~ll~y~~~~-~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~  303 (415)
                      |--+=.|+.+. ..|.++-|-..+-.+.++.|-.+. -+.++-..|-|++|.+-+
T Consensus       203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            66566788765 467889999999999999997555 556677789999998644

>PTZ00420 coronin; Provisional

Probab=91.56  E-value=9.1  Score=41.55  Aligned_cols=84  Identities=14%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             EEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe-EEEEEEEEEC-CeeEEEEeeec
Q 014962           11 KFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET-GKSMELVRVG-HEQVLVVGTSL   88 (415)
Q Consensus        11 ~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~-~~si~~~~l~-~~~~lvVGT~~   88 (415)
                      .+........++++|+++.++..+.+       ..|+++|+.+++.+.++.-..+-. ..++....|. +..+|+. |++
T Consensus       163 ~i~~~~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlT-tG~  234 (568)
T PTZ00420        163 QINMPKKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILS-TGF  234 (568)
T ss_pred             EEecCCcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEE-EEc
Confidence            34445567888999998887666533       359999999999887665433321 1112222333 3345443 332


Q ss_pred             CCCCCCCCCCCccccccEEEEEEEE
Q 014962           89 SSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        89 ~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      ..           .+.+.|.+|++.
T Consensus       235 d~-----------~~~R~VkLWDlr  248 (568)
T PTZ00420        235 SK-----------NNMREMKLWDLK  248 (568)
T ss_pred             CC-----------CCccEEEEEECC
Confidence            21           223568899988

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=91.44  E-value=3.7  Score=43.51  Aligned_cols=88  Identities=14%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             CCceEEEeee-CCceEEEEeCCe--EEEEeeCCCCcccee-eeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962          186 PGMVLAICPY-LDRYFLASAGNA--FYVCGFPNDNPQRVR-RFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       186 ~g~V~al~~~-~g~yLl~~vg~~--l~v~~~~~~~~~~L~-~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      +|++...|-. .|+ .||.|++.  |+||++..   ++|. ..-+|-..+..++-...|.||++|---+=|+++.|-+  
T Consensus       290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt---~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e--  363 (636)
T KOG2394|consen  290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT---QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE--  363 (636)
T ss_pred             cccccceeEcCCCc-eEEEEecCceEEEeeccH---HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc--
Confidence            3566666633 567 56777766  89999985   3333 2235556778888888999999999999899988853  


Q ss_pred             CeEEEEec-CCCcceeEEEEe
Q 014962          262 RKLEQIYC-DPSQRLVADCVL  281 (415)
Q Consensus       262 ~~L~~var-D~~~~~vta~~~  281 (415)
                      .  ..+|| .-++.||+.+.|
T Consensus       364 r--RVVARGqGHkSWVs~VaF  382 (636)
T KOG2394|consen  364 R--RVVARGQGHKSWVSVVAF  382 (636)
T ss_pred             c--eEEEeccccccceeeEee
Confidence            3  34555 456789999888

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.42  E-value=2.8  Score=43.43  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=82.7

Q ss_pred             EecCCceEEEeeeCC--ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEe--CCEEEEeecCCcEEEEEEE
Q 014962          183 TTWPGMVLAICPYLD--RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       183 ~~~~g~V~al~~~~g--~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~--~n~IlVGD~~~Sv~ll~y~  258 (415)
                      +..+|+|.+++=..|  ....++.--.+.+|..+.   -.... .++..+..|..|++.  +--+-||-.-+++-+++. 
T Consensus       241 ~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---~s~ve-tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-  315 (479)
T KOG0299|consen  241 KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---LSYVE-TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-  315 (479)
T ss_pred             cccccceeeeeeecCccceeeeecCCceEEEehhH---hHHHH-HHhCCccceeeechhcccceEEeccccceeEEEec-
Confidence            456889999986555  313455666689999975   11223 466667788888873  445777889999999998 


Q ss_pred             ccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962          259 EDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       259 ~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~  301 (415)
                      +++-+|+-.+-   ...+-|+.|++++.|+.+-.+|+|.....
T Consensus       316 ~eesqlifrg~---~~sidcv~~In~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  316 PEESQLIFRGG---EGSIDCVAFINDEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             cccceeeeeCC---CCCeeeEEEecccceeeccCCceEEEeee
Confidence            77778877765   44677899999999999999999988774

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=91.42  E-value=29  Score=39.17  Aligned_cols=104  Identities=10%  Similarity=0.155  Sum_probs=65.2

Q ss_pred             CCceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc--CCeEEEEecCC
Q 014962          196 LDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED--ARKLEQIYCDP  271 (415)
Q Consensus       196 ~g~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~--~~~L~~varD~  271 (415)
                      .|. .+|+-+..  |.+.+....  ...+...-++.+...++....++++++.+.--.|.++.++..  .+.|.-+.+|.
T Consensus       107 ~g~-~iaagsdD~~vK~~~~~D~--s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n  183 (933)
T KOG1274|consen  107 SGK-MIAAGSDDTAVKLLNLDDS--SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN  183 (933)
T ss_pred             CCc-EEEeecCceeEEEEecccc--chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccc
Confidence            356 55555555  445555542  223333567888888899999999999999999988877643  24556666665


Q ss_pred             Ccc---eeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962          272 SQR---LVADCVLM-DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       272 ~~~---~vta~~~L-d~d~~l~aD~~gNl~vl~~~  302 (415)
                      .-.   -++-...= +..++++.-.++-+.+++..
T Consensus       184 ~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  184 EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             cccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence            533   22222221 33577776666677777643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.24  E-value=18  Score=36.41  Aligned_cols=96  Identities=14%  Similarity=-0.028  Sum_probs=51.4

Q ss_pred             CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc
Q 014962          196 LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR  274 (415)
Q Consensus       196 ~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~  274 (415)
                      ++. +++ +.++.++.++.... ...++. ..   . ........+++|++++....+  +.++...+++.--..+....
T Consensus       241 ~~~-vy~~~~~g~l~a~d~~tG-~~~W~~-~~---~-~~~~p~~~~~~vyv~~~~G~l--~~~d~~tG~~~W~~~~~~~~  311 (377)
T TIGR03300       241 GGQ-VYAVSYQGRVAALDLRSG-RVLWKR-DA---S-SYQGPAVDDNRLYVTDADGVV--VALDRRSGSELWKNDELKYR  311 (377)
T ss_pred             CCE-EEEEEcCCEEEEEECCCC-cEEEee-cc---C-CccCceEeCCEEEEECCCCeE--EEEECCCCcEEEccccccCC
Confidence            344 444 45667888888642 222322 21   1 122334568899998855444  45555555432111111111


Q ss_pred             eeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962          275 LVADCVLMDVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       275 ~vta~~~Ld~d~~l~aD~~gNl~vl~~  301 (415)
                       ..+.-.+.++.+++++.+|.|++++.
T Consensus       312 -~~ssp~i~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       312 -QLTAPAVVGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             -ccccCEEECCEEEEEeCCCEEEEEEC
Confidence             22222346778888999999999873

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=91.12  E-value=2.7  Score=45.07  Aligned_cols=106  Identities=9%  Similarity=0.167  Sum_probs=62.0

Q ss_pred             CCceEEEe--eeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccC
Q 014962          186 PGMVLAIC--PYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       186 ~g~V~al~--~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      +|-|.++.  +..-. |++|.-..|++|+|-+   +.|++ ...-....|.+|.  ..|+-|++|..-+=+..+-.+-..
T Consensus       566 kG~vq~v~FHPs~p~-lfVaTq~~vRiYdL~k---qelvK-kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss  640 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPY-LFVATQRSVRIYDLSK---QELVK-KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS  640 (733)
T ss_pred             CCceeEEEecCCCce-EEEEeccceEEEehhH---HHHHH-HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence            45566554  34445 9999999999999986   44444 2222233455554  467889998887777555544321


Q ss_pred             --CeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEe
Q 014962          262 --RKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       262 --~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~  300 (415)
                        .+-..    .+..-++++.|= -...|+.+-.+|.++||.
T Consensus       641 kPyk~lr----~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  641 KPYKTLR----LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             chhHHhh----hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence              11111    123345555542 234666777778877776

>PHA03098 kelch-like protein; Provisional

Probab=90.37  E-value=18  Score=38.39  Aligned_cols=91  Identities=11%  Similarity=0.014  Sum_probs=52.5

Q ss_pred             EeeeCCceEEEEeC--------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC------cEEEEE
Q 014962          192 ICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD------GILFYS  256 (415)
Q Consensus       192 l~~~~g~yLl~~vg--------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~------Sv~ll~  256 (415)
                      ++.++|+ |.+.-|        +.+..|++..   ..+...+....+....+..+.++.|++ |-...      .-.+..
T Consensus       385 ~~~~~~~-iYv~GG~~~~~~~~~~v~~yd~~t---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  460 (534)
T PHA03098        385 VVNVNNL-IYVIGGISKNDELLKTVECFSLNT---NKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES  460 (534)
T ss_pred             EEEECCE-EEEECCcCCCCcccceEEEEeCCC---CeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence            3445666 544333        3477888764   235544433223334455566777665 42110      112789


Q ss_pred             EEccCCeEEEEecCCCcceeEEEEeeeCCe
Q 014962          257 YHEDARKLEQIYCDPSQRLVADCVLMDVDT  286 (415)
Q Consensus       257 y~~~~~~L~~varD~~~~~vta~~~Ld~d~  286 (415)
                      |++..++-..++.-+.+++-.++..+++.-
T Consensus       461 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i  490 (534)
T PHA03098        461 YNPVTNKWTELSSLNFPRINASLCIFNNKI  490 (534)
T ss_pred             ecCCCCceeeCCCCCcccccceEEEECCEE
Confidence            999999888888766777766665555443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=90.37  E-value=15  Score=37.92  Aligned_cols=102  Identities=20%  Similarity=0.287  Sum_probs=64.5

Q ss_pred             eeeEEEEeCCCCcEEEEEeCCC-------CCeEEEEEEEEE--CCe----eEEEEeeecCCCCCCCCCCCccccccEEEE
Q 014962           43 SSDICCVDPLSGSVLSSFKLEL-------GETGKSMELVRV--GHE----QVLVVGTSLSSGPAIMPSGEAESTKGRLIV  109 (415)
Q Consensus        43 ~s~i~l~d~~t~~~i~s~~l~~-------~E~~~si~~~~l--~~~----~~lvVGT~~~~~~~~~~~~e~~~~~Gri~v  109 (415)
                      ..+|-++|-..-.+|..-.+.+       .+.+++++-..+  +++    ..+.|||.                .|.+++
T Consensus       106 ~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn----------------~G~v~~  169 (395)
T PF08596_consen  106 SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN----------------SGNVLT  169 (395)
T ss_dssp             TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET----------------TSEEEE
T ss_pred             CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC----------------CCCEEE
Confidence            4579999998878887655544       467777654443  343    79999988                699999


Q ss_pred             EEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEE-ecCCc
Q 014962          110 LCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYST-TWPGM  188 (415)
Q Consensus       110 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~-~~~g~  188 (415)
                      |.+....                                                       .++|..+++..+ ..+++
T Consensus       170 fkIlp~~-------------------------------------------------------~g~f~v~~~~~~~~~~~~  194 (395)
T PF08596_consen  170 FKILPSS-------------------------------------------------------NGRFSVQFAGATTNHDSP  194 (395)
T ss_dssp             EEEEE-G-------------------------------------------------------GG-EEEEEEEEE--SS--
T ss_pred             EEEecCC-------------------------------------------------------CCceEEEEeeccccCCCc
Confidence            9998310                                                       124778888877 67888


Q ss_pred             eEEEeeeCC-----------------------ceEEEEeCCeEEEEeeCC
Q 014962          189 VLAICPYLD-----------------------RYFLASAGNAFYVCGFPN  215 (415)
Q Consensus       189 V~al~~~~g-----------------------~yLl~~vg~~l~v~~~~~  215 (415)
                      |.+|++|+.                       .|++++.-..++++.+..
T Consensus       195 i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~  244 (395)
T PF08596_consen  195 ILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK  244 (395)
T ss_dssp             --EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred             eEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence            988888831                       247777777799998876

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=90.19  E-value=23  Score=36.01  Aligned_cols=145  Identities=15%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             ceEEEEEEE--------ecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeee---ccceEEEEEEEeCCEE
Q 014962          175 WQLRLAYST--------TWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVG---RTRFMIMLLTAHFTRI  243 (415)
Q Consensus       175 ~~L~l~~~~--------~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~---~~~~~i~sI~~~~n~I  243 (415)
                      ++|+++|-+        .++.+|.++.--+.| |+|..-..+|+|+++.  -++|.....+   .....+.++...+.++
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~R-LvV~Lee~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~yl  144 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSILAVRMNRKR-LVVCLEESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYL  144 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCceEEEEEccce-EEEEEcccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceE
Confidence            578888755        467889998866778 9999999999999986  4455443333   1223555555566688


Q ss_pred             EEeecCCcEEEEEEEccCCeE-EEEecCCCcceeEEEEeeeCCeE-EEeCCCCc-EEEEecCCCcCCCCCCCCccceeee
Q 014962          244 AVGDCRDGILFYSYHEDARKL-EQIYCDPSQRLVADCVLMDVDTA-VVSDRKGS-IAVLSCSDRLEDNASPECNLTPNCA  320 (415)
Q Consensus       244 lVGD~~~Sv~ll~y~~~~~~L-~~varD~~~~~vta~~~Ld~d~~-l~aD~~gN-l~vl~~~~~~~~~~~~~~kL~~~~~  320 (415)
                      ..=|...+=.++-|+..+-+= ..+.  .+...+.|+.|=.++++ ..|-..|- |.|+..+.        .+|+   -+
T Consensus       145 Ayp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--------G~kl---~e  211 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--------GQKL---YE  211 (391)
T ss_pred             EecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------ccEe---ee
Confidence            887777766677777654211 2221  33445555555444444 34444444 67777653        1343   45


Q ss_pred             eecCccccEEEeece
Q 014962          321 YHMGEIAVSIRKGSF  335 (415)
Q Consensus       321 fhlGd~Vt~~~~gsl  335 (415)
                      |.=|-...++..-+|
T Consensus       212 FRRG~~~~~IySL~F  226 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSF  226 (391)
T ss_pred             eeCCceeeEEEEEEE
Confidence            666666555554444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=90.19  E-value=2.7  Score=43.83  Aligned_cols=201  Identities=14%  Similarity=0.142  Sum_probs=123.4

Q ss_pred             EEEEeCCCccCEEEEecCC-CEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-eeEEEEee
Q 014962            9 VRKFHLGGTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGT   86 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~-~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-~~~lvVGT   86 (415)
                      +.+..++..|..+-+||+. +.|+++.++.       .|+..|-.++++++.|.    ++.-++..+.|-. ..++| .|
T Consensus       293 ~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~-------ki~~wDiRs~kvvqeYd----~hLg~i~~i~F~~~g~rFi-ss  360 (503)
T KOG0282|consen  293 LSRFHLDKVPTCVKFHPDNQNIFLVGGSDK-------KIRQWDIRSGKVVQEYD----RHLGAILDITFVDEGRRFI-SS  360 (503)
T ss_pred             EEEEecCCCceeeecCCCCCcEEEEecCCC-------cEEEEeccchHHHHHHH----hhhhheeeeEEccCCceEe-ee
Confidence            4578899999999999997 7888876654       49999999999887663    5666777777743 34443 33


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      +-               -+.+++|+...                                            |-      
T Consensus       361 SD---------------dks~riWe~~~--------------------------------------------~v------  375 (503)
T KOG0282|consen  361 SD---------------DKSVRIWENRI--------------------------------------------PV------  375 (503)
T ss_pred             cc---------------CccEEEEEcCC--------------------------------------------Cc------
Confidence            31               12677777762                                            11      


Q ss_pred             ccccccccceEEEEEEE-ecCCceEEEeeeCCceEEE-EeCCeEEEEeeCCCCccceee-eeeeccceEEEEEEE--eCC
Q 014962          167 IKLEETETWQLRLAYST-TWPGMVLAICPYLDRYFLA-SAGNAFYVCGFPNDNPQRVRR-FAVGRTRFMIMLLTA--HFT  241 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~~-~~~g~V~al~~~~g~yLl~-~vg~~l~v~~~~~~~~~~L~~-~a~~~~~~~i~sI~~--~~n  241 (415)
                               .++++... ...-|..++.+..+- +++ +++|.+++|.....-+.-.++ ..-+...-|.+.+..  .|.
T Consensus       376 ---------~ik~i~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  376 ---------PIKNIADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             ---------cchhhcchhhccCcceecCCCCCe-ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence                     22222222 233456666666444 444 688889998876421111111 122233336666654  678


Q ss_pred             EEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC--CeEEEeCCCCcEEEE
Q 014962          242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVL  299 (415)
Q Consensus       242 ~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~--d~~l~aD~~gNl~vl  299 (415)
                      +++-||.--.|.|+.|+...  |.-.-+-. ..-|+.+..-+.  +.+++++-+|-|.++
T Consensus       446 ~l~SGdsdG~v~~wdwkt~k--l~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTK--LVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             eEEeecCCccEEEeechhhh--hhhccccC-CcceEEEEecCCCcceeEecccCceeEec
Confidence            99999999999999988532  22222222 223445554433  467888888887654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.96  E-value=28  Score=36.53  Aligned_cols=115  Identities=7%  Similarity=0.041  Sum_probs=76.3

Q ss_pred             EecCCceEEEeee-CCceEEEEeC--CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962          183 TTWPGMVLAICPY-LDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE  259 (415)
Q Consensus       183 ~~~~g~V~al~~~-~g~yLl~~vg--~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~  259 (415)
                      ......|++++=. .|. ++++.+  ..|++|+.+.  .+.++++..+..++........+++|+.++...=+  .-|+.
T Consensus       243 ~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i--~vwd~  317 (456)
T KOG0266|consen  243 KGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI--RVWDL  317 (456)
T ss_pred             cCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE--EEEEC
Confidence            3567778888722 355 555444  3489999987  35677778787777777777889999999664444  55677


Q ss_pred             cCCe---EEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962          260 DARK---LEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       260 ~~~~---L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~  302 (415)
                      ..++   +.++.++..+..++.+.|= +.+.++.+=.++.+..+.+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            6666   3455555555577777773 44566666556566665544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=89.92  E-value=15  Score=40.68  Aligned_cols=172  Identities=10%  Similarity=0.060  Sum_probs=107.3

Q ss_pred             eEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCcc
Q 014962           45 DICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMT  124 (415)
Q Consensus        45 ~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~  124 (415)
                      +|||-++...+.+..|.  =++.|+|++- .--++.|++=|.-                -|++-+|.|..          
T Consensus       391 TVRLWh~~~~~CL~~F~--HndfVTcVaF-nPvDDryFiSGSL----------------D~KvRiWsI~d----------  441 (712)
T KOG0283|consen  391 TVRLWHPGRKECLKVFS--HNDFVTCVAF-NPVDDRYFISGSL----------------DGKVRLWSISD----------  441 (712)
T ss_pred             cEEeecCCCcceeeEEe--cCCeeEEEEe-cccCCCcEeeccc----------------ccceEEeecCc----------
Confidence            68888888888887654  4567776532 1126789998854                46788888872          


Q ss_pred             ccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEE
Q 014962          125 FCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLAS  203 (415)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~  203 (415)
                                                                          -+.++-.+++..|+|+|-. .|+|.|+|
T Consensus       442 ----------------------------------------------------~~Vv~W~Dl~~lITAvcy~PdGk~avIG  469 (712)
T KOG0283|consen  442 ----------------------------------------------------KKVVDWNDLRDLITAVCYSPDGKGAVIG  469 (712)
T ss_pred             ----------------------------------------------------CeeEeehhhhhhheeEEeccCCceEEEE
Confidence                                                                2345568888999999954 46767776


Q ss_pred             -eCCeEEEEeeCCCCccceeeeeeeccc---------eEEEEEEEe---CCEEEEeecCCcEEEEEEEccCCeEEEEecC
Q 014962          204 -AGNAFYVCGFPNDNPQRVRRFAVGRTR---------FMIMLLTAH---FTRIAVGDCRDGILFYSYHEDARKLEQIYCD  270 (415)
Q Consensus       204 -vg~~l~v~~~~~~~~~~L~~~a~~~~~---------~~i~sI~~~---~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD  270 (415)
                       ....+++|.-..-  + ++.  ...+.         -.|+.++..   .+.|+|...--=+-+  |+-.+..|++.-+.
T Consensus       470 t~~G~C~fY~t~~l--k-~~~--~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI--~d~~~~~lv~KfKG  542 (712)
T KOG0283|consen  470 TFNGYCRFYDTEGL--K-LVS--DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRI--YDGRDKDLVHKFKG  542 (712)
T ss_pred             EeccEEEEEEccCC--e-EEE--eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEE--Eeccchhhhhhhcc
Confidence             5666788876541  1 111  01111         147777764   346777554444433  34444566666665


Q ss_pred             CCccee-EEEEee-eCCeEEEeCCCCcEEEEecCCC
Q 014962          271 PSQRLV-ADCVLM-DVDTAVVSDRKGSIAVLSCSDR  304 (415)
Q Consensus       271 ~~~~~v-ta~~~L-d~d~~l~aD~~gNl~vl~~~~~  304 (415)
                      +....- ..+.|. |...+|++-.+-.+++.++++.
T Consensus       543 ~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  543 FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             cccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            554332 344454 5557888878888999997553

>PHA02713 hypothetical protein; Provisional

Probab=89.91  E-value=24  Score=38.18  Aligned_cols=95  Identities=14%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecC---CcE-EEEEEEccC-CeEEEEecCCCcceeEEE
Q 014962          206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCR---DGI-LFYSYHEDA-RKLEQIYCDPSQRLVADC  279 (415)
Q Consensus       206 ~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~---~Sv-~ll~y~~~~-~~L~~varD~~~~~vta~  279 (415)
                      +.+..|+...   ..+...+....+-.-..+.+.++.|+| |...   ... .+.+|+++. ++-..++.=+.+|....+
T Consensus       432 ~~ve~YDP~t---d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        432 NKVIRYDTVN---NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             ceEEEECCCC---CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence            3477788875   335555554444344566778888766 5332   112 357999998 789999887788888888


Q ss_pred             EeeeCCeEEEeCCCCcEEEEecCC
Q 014962          280 VLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       280 ~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ..+++.-++.+-.+|.--+-.|++
T Consensus       509 ~~~~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        509 ILHDNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             EEECCEEEEEeeecceeehhhcCc
Confidence            888888655554455322333444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=89.72  E-value=4.9  Score=38.95  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEe
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVG   85 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVG   85 (415)
                      -+.++-+..-+..+-++++.+.+.++        ..++|.+.|+++|..+.+++++-|=.     +..|. ++.++|-|
T Consensus       177 ~v~sL~~~s~VtSlEvs~dG~ilTia--------~gssV~Fwdaksf~~lKs~k~P~nV~-----SASL~P~k~~fVaG  242 (334)
T KOG0278|consen  177 EVQSLEFNSPVTSLEVSQDGRILTIA--------YGSSVKFWDAKSFGLLKSYKMPCNVE-----SASLHPKKEFFVAG  242 (334)
T ss_pred             EEEEEecCCCCcceeeccCCCEEEEe--------cCceeEEeccccccceeeccCccccc-----cccccCCCceEEec
Confidence            45677788888888888888776554        36889999999999999999887644     34443 45666666

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=89.61  E-value=7.8  Score=39.09  Aligned_cols=124  Identities=14%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             EEEEeCCeEEEEeeCCCCc--cceeee-----eeecc-ceEEEEEEEeCCEEEEeec-CCcEEEEEEEccCCeEEEEecC
Q 014962          200 FLASAGNAFYVCGFPNDNP--QRVRRF-----AVGRT-RFMIMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCD  270 (415)
Q Consensus       200 Ll~~vg~~l~v~~~~~~~~--~~L~~~-----a~~~~-~~~i~sI~~~~n~IlVGD~-~~Sv~ll~y~~~~~~L~~varD  270 (415)
                      ++.=.++.|.||++.....  +.|+..     .|.+. ..-...|+..|.++++.+= .+|+++++.++..++|..++.-
T Consensus       207 ~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~  286 (346)
T COG2706         207 LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT  286 (346)
T ss_pred             EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence            4455667777777765210  112221     22211 1246677778999999994 5699999999999999988765


Q ss_pred             CCcce-eEEEEeeeCC-eEEEe-CCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEE
Q 014962          271 PSQRL-VADCVLMDVD-TAVVS-DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI  330 (415)
Q Consensus       271 ~~~~~-vta~~~Ld~d-~~l~a-D~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~  330 (415)
                      ..-.. -..-.|=..+ .++++ .+..||.+|+.++     ++  -+|.....+-.+..++++
T Consensus       287 ~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~-----~T--G~L~~~~~~~~~p~Pvcv  342 (346)
T COG2706         287 PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK-----ET--GRLTLLGRYAVVPEPVCV  342 (346)
T ss_pred             ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC-----CC--ceEEecccccCCCCcEEE
Confidence            44333 2233332222 33443 5567799999876     22  256666665554444444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=89.42  E-value=11  Score=36.86  Aligned_cols=79  Identities=10%  Similarity=0.168  Sum_probs=49.8

Q ss_pred             EEEEEEecCCceEEEee-eCCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEE
Q 014962          178 RLAYSTTWPGMVLAICP-YLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFY  255 (415)
Q Consensus       178 ~l~~~~~~~g~V~al~~-~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll  255 (415)
                      +.+++.+++--+.-++- +.+.++++..| .+|.+..|..  -+-+...-.+-.+++...+...|-+..+|-+-..++|+
T Consensus       139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW  216 (313)
T KOG1407|consen  139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW  216 (313)
T ss_pred             ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence            33444555555555553 33443666677 6788988864  11222223344556888888899999999888888887


Q ss_pred             EEE
Q 014962          256 SYH  258 (415)
Q Consensus       256 ~y~  258 (415)
                      -.+
T Consensus       217 D~~  219 (313)
T KOG1407|consen  217 DVD  219 (313)
T ss_pred             Chh
Confidence            554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=89.37  E-value=32  Score=36.41  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             EEEecCCCEEEEEEEee-----------CCCcceeeEEEEeCCCCcEEEEEeCCCC
Q 014962           21 VLYHSESRLLIVMRTEL-----------NNDTCSSDICCVDPLSGSVLSSFKLELG   65 (415)
Q Consensus        21 I~y~~~~~~~~v~~~~~-----------~~~~~~s~i~l~d~~t~~~i~s~~l~~~   65 (415)
                      .++++..+.+++.+.+.           .++.+.+.|--+|..|++.+.++++.+.
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~  277 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH  277 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence            46666667676765432           1234556899999999999999987654

The alignment model contains an 8-bladed beta-propeller.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=89.29  E-value=7.3  Score=37.83  Aligned_cols=120  Identities=10%  Similarity=0.001  Sum_probs=81.8

Q ss_pred             EEEEEEEecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEE--EEEEEeCCEEEEeecCCcEE
Q 014962          177 LRLAYSTTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMI--MLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       177 L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i--~sI~~~~n~IlVGD~~~Sv~  253 (415)
                      -+.+++-+++.+|.++.-. .|+||.+|-|..|.-|+.+.     +..+-.+++|+.|  .+|...+++.++|--+-  +
T Consensus       175 gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks-----f~~lKs~k~P~nV~SASL~P~k~~fVaGged~--~  247 (334)
T KOG0278|consen  175 GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS-----FGLLKSYKMPCNVESASLHPKKEFFVAGGEDF--K  247 (334)
T ss_pred             CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc-----ccceeeccCccccccccccCCCceEEecCcce--E
Confidence            4557778899999999854 57888899999999999875     3333456777654  45667778777776543  4


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +++||-..+.=+..----.+.-|-|+.|- |...+..+-.+|.|.+.+..+
T Consensus       248 ~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  248 VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             EEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            46666544321222112344556777775 445788888899999999765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.96  E-value=35  Score=36.31  Aligned_cols=232  Identities=13%  Similarity=0.106  Sum_probs=124.4

Q ss_pred             CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCC
Q 014962           15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~   94 (415)
                      .+.+..+.|.+++..++|++..       +.|+|.|..+...+..+...-..+|-|+.-    +...+..|.-       
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~-------g~v~iwD~~~~k~~~~~~~~h~~rvg~laW----~~~~lssGsr-------  278 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSD-------GTVQIWDVKEQKKTRTLRGSHASRVGSLAW----NSSVLSSGSR-------  278 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecC-------CeEEEEehhhccccccccCCcCceeEEEec----cCceEEEecC-------
Confidence            6688999999999999998744       459999988777666555543455555432    2344444432       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCC----CCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDC----GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE  170 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~  170 (415)
                               -|.|+.+++...+.-..    -...+|+=+-+..-+-         -+..+|.+..            .+=
T Consensus       279 ---------~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~---------lASGgnDN~~------------~Iw  328 (484)
T KOG0305|consen  279 ---------DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ---------LASGGNDNVV------------FIW  328 (484)
T ss_pred             ---------CCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---------eccCCCccce------------Eec
Confidence                     45566666653110000    0001111111100000         0000000000            000


Q ss_pred             ccccceEEEEEEEecCCceEEEe--eeCCceEEEEeCCe---EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCE--E
Q 014962          171 ETETWQLRLAYSTTWPGMVLAIC--PYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTR--I  243 (415)
Q Consensus       171 ~~~~~~L~l~~~~~~~g~V~al~--~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~--I  243 (415)
                      .. ...-.+++-.+..++|.||.  ++....|+.|-|.+   |..|+-..  .+.+   ...++...|.+|.=.+.+  |
T Consensus       329 d~-~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~--g~~i---~~vdtgsQVcsL~Wsk~~kEi  402 (484)
T KOG0305|consen  329 DG-LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT--GARI---DSVDTGSQVCSLIWSKKYKEL  402 (484)
T ss_pred             cC-CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC--CcEe---cccccCCceeeEEEcCCCCEE
Confidence            00 00112234466778888876  77666244455554   34444432  1223   345667788888765543  4


Q ss_pred             EE--eecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          244 AV--GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       244 lV--GD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +.  |....-|.+++|-. -+.+..+......  |..+..= |.++++.+..+.||.++.+-+
T Consensus       403 ~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R--Vl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  403 LSTHGYSENQITLWKYPS-MKLVAELLGHTSR--VLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEecCCCCCcEEEEeccc-cceeeeecCCcce--eEEEEECCCCCEEEEecccCcEEeccccC
Confidence            43  78888999999965 3444555444333  5554443 446899999999999999644

>PTZ00421 coronin; Provisional

Probab=88.77  E-value=36  Score=36.26  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=53.6

Q ss_pred             cCCceEEEee-eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEE-Eeec---CCcEEEEE
Q 014962          185 WPGMVLAICP-YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIA-VGDC---RDGILFYS  256 (415)
Q Consensus       185 ~~g~V~al~~-~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~Il-VGD~---~~Sv~ll~  256 (415)
                      ..+.|++|+- -.|.+|+.+ -.++|.+|++...  +.+.....+. ......+.  ..+++|+ +|..   .+.+.++.
T Consensus       167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg--~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG--TIVSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             CCCceEEEEEECCCCEEEEecCCCEEEEEECCCC--cEEEEEecCC-CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence            3467888873 356634333 3456999999852  3333322221 11111111  2334554 3422   34566655


Q ss_pred             EEccCCeEEEEecCCCcceeEEEEeeeCC--eE-EEeCCCCcEEEEecCC
Q 014962          257 YHEDARKLEQIYCDPSQRLVADCVLMDVD--TA-VVSDRKGSIAVLSCSD  303 (415)
Q Consensus       257 y~~~~~~L~~varD~~~~~vta~~~Ld~d--~~-l~aD~~gNl~vl~~~~  303 (415)
                      .+.....+....-|..  ....+.+.+.+  .+ +++..+|+|.++++..
T Consensus       244 lr~~~~p~~~~~~d~~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        244 TRKMASPYSTVDLDQS--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CCCCCCceeEeccCCC--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            4432323332222221  12233344544  33 4445689999998754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.30  E-value=30  Score=34.69  Aligned_cols=137  Identities=11%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             CceEEEeee-CCceEEE--EeCCeEEEEeeCCCCcc--ceeeeeee----cc--ceEEEEEEEeCCEEEEeec-CCcEEE
Q 014962          187 GMVLAICPY-LDRYFLA--SAGNAFYVCGFPNDNPQ--RVRRFAVG----RT--RFMIMLLTAHFTRIAVGDC-RDGILF  254 (415)
Q Consensus       187 g~V~al~~~-~g~yLl~--~vg~~l~v~~~~~~~~~--~L~~~a~~----~~--~~~i~sI~~~~n~IlVGD~-~~Sv~l  254 (415)
                      ..+..|.-- +|+++.+  -..+.|.+|++...+..  .+...+..    ..  ...-..|...+.+++|+.- ..++++
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            345555522 4553433  35788999999832211  12221211    10  1234445567899999985 568999


Q ss_pred             EEEEccCCeEEEEecCCC-cceeEEEEee-eCCeEEEeC-CCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEE
Q 014962          255 YSYHEDARKLEQIYCDPS-QRLVADCVLM-DVDTAVVSD-RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI  330 (415)
Q Consensus       255 l~y~~~~~~L~~varD~~-~~~vta~~~L-d~d~~l~aD-~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~  330 (415)
                      ++.+++.++|..+..=.. ..+-..+.+- |.+.++++. ..++|.+++.++     ++  -+|...+...-...++++
T Consensus       272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~-----~t--G~l~~~~~~~~~~~p~ci  343 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP-----DT--GKLTPVGSSVPIPSPVCI  343 (345)
T ss_dssp             EEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET-----TT--TEEEEEEEEEESSSEEEE
T ss_pred             EEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC-----CC--CcEEEecccccCCCCEEE
Confidence            999888787877654322 2233444442 334566665 566799998865     12  367776654444444443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.22  E-value=57  Score=37.84  Aligned_cols=228  Identities=17%  Similarity=0.175  Sum_probs=139.7

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC--CCCeEEEEEEEEECCeeEEEEeeecCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE--LGETGKSMELVRVGHEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~--~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~   94 (415)
                      .|+.+.+||-..+++++--       +..|++.|-...+.+..|...  +.-.|+.++.+.=.+..++++|+.       
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~-------r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~------- 1131 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADD-------RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS------- 1131 (1387)
T ss_pred             CCceeeecCCCceeEEcCC-------cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc-------
Confidence            5888999999888887731       234888888777777766643  356777777775555688888866       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               -|-|-+|+=-.                                             +     +       -
T Consensus      1132 ---------dGvIRIwk~y~---------------------------------------------~-----~-------~ 1145 (1387)
T KOG1517|consen 1132 ---------DGVIRIWKDYA---------------------------------------------D-----K-------W 1145 (1387)
T ss_pred             ---------CceEEEecccc---------------------------------------------c-----c-------c
Confidence                     34444444321                                             0     0       0


Q ss_pred             ceEEEEEE----------EecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEE---eC
Q 014962          175 WQLRLAYS----------TTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HF  240 (415)
Q Consensus       175 ~~L~l~~~----------~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~---~~  240 (415)
                      .+.+|+..          ..--|.|..-....|+ |+++-+-+ |++|+....  +.... --+.....+++|..   .|
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E--~~~~d-iP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKE--QVVAD-IPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccc--eeEee-cccCCCccceeecccccCC
Confidence            01222210          0011355555666787 76665444 678888752  22222 12234456777765   57


Q ss_pred             CEEEEeecCCcEEEEEEEcc-CCeEEEEecCCCcce-eEEEEee--eCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccc
Q 014962          241 TRIAVGDCRDGILFYSYHED-ARKLEQIYCDPSQRL-VADCVLM--DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLT  316 (415)
Q Consensus       241 n~IlVGD~~~Sv~ll~y~~~-~~~L~~varD~~~~~-vta~~~L--d~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~  316 (415)
                      |.|++|=.--||-++.-+-. ...++.+-|..+... +.-+.+=  ..+.++.+-.+|.|.+++.--...     ...+.
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~~~ 1296 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETFLT 1296 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----cccce
Confidence            99999999999988755432 456777777766553 3333332  223688999999999988533111     12466


Q ss_pred             eeeeeecCccccEEEee
Q 014962          317 PNCAYHMGEIAVSIRKG  333 (415)
Q Consensus       317 ~~~~fhlGd~Vt~~~~g  333 (415)
                      -..++..|...|+|..-
T Consensus      1297 iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVH 1313 (1387)
T ss_pred             eeeccccCccceeeeec
Confidence            66777778878887533

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=87.80  E-value=52  Score=36.94  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=74.3

Q ss_pred             ecCCceEEEeeeCCce-EEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962          184 TWPGMVLAICPYLDRY-FLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       184 ~~~g~V~al~~~~g~y-Ll~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      .+...|+++.+-.--- +++| .+.+|++++++.|  +.|+...--..+..-.+-.+.|+.+++.--..|. +.-||-+.
T Consensus       200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~-m~~wDLe~  276 (910)
T KOG1539|consen  200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD-MAFWDLEK  276 (910)
T ss_pred             ccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEccccceeEEEeccCCCeeEEeccCCce-EEEEEcCC
Confidence            3557788887544321 3344 3466999999985  4566633322444444445678887775544442 34567788


Q ss_pred             CeEEEEecCCCcceeEEEEeeeCCeEEEe---CCCCcEEEEe
Q 014962          262 RKLEQIYCDPSQRLVADCVLMDVDTAVVS---DRKGSIAVLS  300 (415)
Q Consensus       262 ~~L~~varD~~~~~vta~~~Ld~d~~l~a---D~~gNl~vl~  300 (415)
                      .+|+-+-++.+...++...||....++++   |..--+|++.
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence            99999999989889999999988865543   5444455555

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=87.52  E-value=25  Score=32.94  Aligned_cols=79  Identities=9%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS   87 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~   87 (415)
                      +..++.+..|+.++++|+.+.+++...+      ...+..+|..+++.+.....  .+.+.+   +.+. +..++++++.
T Consensus       108 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~~~~~~~~~~~--~~~~~~---~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       108 LAEIPVGVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTKTYEIVDNVLV--DQRPRF---AEFTADGKELWVSSE  176 (300)
T ss_pred             EeEeeCCCCcceEEECCCCCEEEEEecC------CCeEEEEeCCCCeEEEEEEc--CCCccE---EEECCCCCEEEEEcC
Confidence            4556667778899999998887766422      12466678888776654432  333333   3333 4456665532


Q ss_pred             cCCCCCCCCCCCccccccEEEEEEEE
Q 014962           88 LSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        88 ~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                                     ..|++.+|++.
T Consensus       177 ---------------~~~~v~i~d~~  187 (300)
T TIGR03866       177 ---------------IGGTVSVIDVA  187 (300)
T ss_pred             ---------------CCCEEEEEEcC
Confidence                           24688888887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.51  E-value=33  Score=34.30  Aligned_cols=81  Identities=20%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             EEEEeCCC-ccCEEEEecCCCEEEEE----EEeeC-------CCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEE
Q 014962            9 VRKFHLGG-TPKKVLYHSESRLLIVM----RTELN-------NDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV   76 (415)
Q Consensus         9 i~~i~L~~-tp~~I~y~~~~~~~~v~----~~~~~-------~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l   76 (415)
                      +..+|..+ -||-|..+|+.++++|+    .+.+.       -....++|-++|..+++++...+|++.-+=+||.-+-+
T Consensus        91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~  170 (305)
T PF07433_consen   91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV  170 (305)
T ss_pred             EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence            44566666 89999999999999998    23322       24678999999999999999999999999999999888


Q ss_pred             CCeeEEEEeeecC
Q 014962           77 GHEQVLVVGTSLS   89 (415)
Q Consensus        77 ~~~~~lvVGT~~~   89 (415)
                      ..+-.+++|--+.
T Consensus       171 ~~~G~V~~a~Q~q  183 (305)
T PF07433_consen  171 DGDGTVAFAMQYQ  183 (305)
T ss_pred             cCCCcEEEEEecC
Confidence            8777777776654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=87.33  E-value=35  Score=37.12  Aligned_cols=104  Identities=15%  Similarity=0.097  Sum_probs=76.1

Q ss_pred             EEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE--e-e----cCCcEEE
Q 014962          182 STTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV--G-D----CRDGILF  254 (415)
Q Consensus       182 ~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV--G-D----~~~Sv~l  254 (415)
                      ...+.|.+|++-+++|..-+    +.+-.|+...   ..+..++....+-....+.+.+++|++  | |    ..+|  +
T Consensus       376 v~~l~g~iYavGG~dg~~~l----~svE~YDp~~---~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s--v  446 (571)
T KOG4441|consen  376 VAVLDGKLYAVGGFDGEKSL----NSVECYDPVT---NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS--V  446 (571)
T ss_pred             eEEECCEEEEEecccccccc----ccEEEecCCC---CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce--E
Confidence            35567777777777663122    3567888875   347776766666677888888887766  3 2    3334  4


Q ss_pred             EEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCC
Q 014962          255 YSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKG  294 (415)
Q Consensus       255 l~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~g  294 (415)
                      ..|++..++=..++.=..+|....+..+++.-++++..+|
T Consensus       447 e~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  447 ECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG  486 (571)
T ss_pred             EEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence            8999999999999999999999899999988776666555

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=87.06  E-value=8.8  Score=42.14  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEE-CCeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV-GHEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l-~~~~~lvVGT~~~~~~~~~   95 (415)
                      -.+.+.|||.+++.+-..++.       .+|+-|-.++..+--|   .++.. .+.++.+ .+..|++-|-.        
T Consensus       537 DV~cv~FHPNs~Y~aTGSsD~-------tVRlWDv~~G~~VRiF---~GH~~-~V~al~~Sp~Gr~LaSg~e--------  597 (707)
T KOG0263|consen  537 DVDCVSFHPNSNYVATGSSDR-------TVRLWDVSTGNSVRIF---TGHKG-PVTALAFSPCGRYLASGDE--------  597 (707)
T ss_pred             ccceEEECCcccccccCCCCc-------eEEEEEcCCCcEEEEe---cCCCC-ceEEEEEcCCCceEeeccc--------
Confidence            456788888877776665554       3677776666665544   23322 2333333 35678887733        


Q ss_pred             CCCCccccccEEEEEEEE
Q 014962           96 PSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~  113 (415)
                              -|+|.+|++.
T Consensus       598 --------d~~I~iWDl~  607 (707)
T KOG0263|consen  598 --------DGLIKIWDLA  607 (707)
T ss_pred             --------CCcEEEEEcC
Confidence                    6899999999

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.76  E-value=15  Score=35.49  Aligned_cols=142  Identities=15%  Similarity=0.160  Sum_probs=86.1

Q ss_pred             EEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc---CCeEEEEecCCCcce
Q 014962          201 LASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED---ARKLEQIYCDPSQRL  275 (415)
Q Consensus       201 l~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~---~~~L~~varD~~~~~  275 (415)
                      +++.|..  +++|+...  .+.+|+..-+..+...+...-.-..|+-|-+-.|+-++.-+..   +=+...-|+|    .
T Consensus        74 f~s~GgDk~v~vwDV~T--Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D----~  147 (307)
T KOG0316|consen   74 FASCGGDKAVQVWDVNT--GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD----G  147 (307)
T ss_pred             cccCCCCceEEEEEccc--CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC----c
Confidence            4544443  67888865  3567776666666555555444456666777778877655432   2233333444    4


Q ss_pred             eEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCC
Q 014962          276 VADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESS  355 (415)
Q Consensus       276 vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~  355 (415)
                      |+++.. .+..++++-.+|++.++..-.            -+...=++|+.||++...                    ..
T Consensus       148 V~Si~v-~~heIvaGS~DGtvRtydiR~------------G~l~sDy~g~pit~vs~s--------------------~d  194 (307)
T KOG0316|consen  148 VSSIDV-AEHEIVAGSVDGTVRTYDIRK------------GTLSSDYFGHPITSVSFS--------------------KD  194 (307)
T ss_pred             eeEEEe-cccEEEeeccCCcEEEEEeec------------ceeehhhcCCcceeEEec--------------------CC
Confidence            444443 566789999999999887432            222444789999998432                    23


Q ss_pred             CceEEEEeCCcceEEEEecChHHHHHHHH
Q 014962          356 QTTIIASTLLGSIVIFIPISSEEYELLEA  384 (415)
Q Consensus       356 ~~~ily~T~~GsIG~l~pl~~~~~~~L~~  384 (415)
                      .++.+-++++++|-+|   +++.=++|..
T Consensus       195 ~nc~La~~l~stlrLl---Dk~tGklL~s  220 (307)
T KOG0316|consen  195 GNCSLASSLDSTLRLL---DKETGKLLKS  220 (307)
T ss_pred             CCEEEEeeccceeeec---ccchhHHHHH
Confidence            4677777777766544   4555555543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=86.70  E-value=38  Score=34.14  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=72.8

Q ss_pred             CceEE-EEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc-cCCeEEEEecCCC--
Q 014962          197 DRYFL-ASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE-DARKLEQIYCDPS--  272 (415)
Q Consensus       197 g~yLl-~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~-~~~~L~~varD~~--  272 (415)
                      ++||. ++.+++|.+|+++.   +.|.........-+-..+..+|-||++.-..--|.++..-- .++.|.++.|-+.  
T Consensus       199 ~k~imsas~dt~i~lw~lkG---q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk  275 (420)
T KOG2096|consen  199 AKYIMSASLDTKICLWDLKG---QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK  275 (420)
T ss_pred             ceEEEEecCCCcEEEEecCC---ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence            46554 56888999999984   66766555444456677788899999988777776664321 2456666666554  


Q ss_pred             --cceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962          273 --QRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       273 --~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~  303 (415)
                        ..-|++..|-.++ .++..-++|.+.++..+-
T Consensus       276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             cchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence              3457777776554 899999999999887543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=86.09  E-value=6.4  Score=33.40  Aligned_cols=64  Identities=13%  Similarity=0.086  Sum_probs=45.6

Q ss_pred             eEEEEeeeC-----CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccc
Q 014962          276 VADCVLMDV-----DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA  350 (415)
Q Consensus       276 vta~~~Ld~-----d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~  350 (415)
                      |+|+.+.|.     +.++++-.+..|.+|+-.             +...++...+.|++++.-                 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------------e~~~Ei~e~~~v~~L~~~-----------------   51 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------------EIVAEITETDKVTSLCSL-----------------   51 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------------cEEEEEecccceEEEEEc-----------------
Confidence            566666653     267777778899999822             234677778888887522                 


Q ss_pred             cCCCCCceEEEEeCCcceEEEEe
Q 014962          351 SFESSQTTIIASTLLGSIVIFIP  373 (415)
Q Consensus       351 ~~~~~~~~ily~T~~GsIG~l~p  373 (415)
                          ...+..|+..+|+||+.-.
T Consensus        52 ----~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   52 ----GGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             ----CCCEEEEEecCCEEEEEeC
Confidence                1256999999999999854

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=85.54  E-value=45  Score=33.93  Aligned_cols=96  Identities=13%  Similarity=0.052  Sum_probs=51.2

Q ss_pred             CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc
Q 014962          196 LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR  274 (415)
Q Consensus       196 ~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~  274 (415)
                      .|. |++ +-+..++.++.... +.+++. .+..    ...+...+++|++++....+  +.++...++..= ..+....
T Consensus       256 ~~~-vy~~~~~g~l~ald~~tG-~~~W~~-~~~~----~~~~~~~~~~vy~~~~~g~l--~ald~~tG~~~W-~~~~~~~  325 (394)
T PRK11138        256 GGV-VYALAYNGNLVALDLRSG-QIVWKR-EYGS----VNDFAVDGGRIYLVDQNDRV--YALDTRGGVELW-SQSDLLH  325 (394)
T ss_pred             CCE-EEEEEcCCeEEEEECCCC-CEEEee-cCCC----ccCcEEECCEEEEEcCCCeE--EEEECCCCcEEE-cccccCC
Confidence            444 444 33556777777542 223332 2111    12345678889998866554  555555553321 1111111


Q ss_pred             eeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962          275 LVADCVLMDVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       275 ~vta~~~Ld~d~~l~aD~~gNl~vl~~  301 (415)
                      +..+.-.+.++.++++|.+|.|+++..
T Consensus       326 ~~~~sp~v~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        326 RLLTAPVLYNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             CcccCCEEECCEEEEEeCCCEEEEEEC
Confidence            222223346778888999999998873

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.38  E-value=9.3  Score=43.67  Aligned_cols=194  Identities=20%  Similarity=0.154  Sum_probs=112.0

Q ss_pred             CcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCC
Q 014962           54 GSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSS  133 (415)
Q Consensus        54 ~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~  133 (415)
                      +-+..+.+.+++|....|+....++..--.|+|+...++...|..+....+++-.+..+...+  ++..++.|..+=|.+
T Consensus       811 g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~--ne~a~~v~~~~fs~~  888 (1205)
T KOG1898|consen  811 GGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVELGQ--NEAAFSVCAVDFSSS  888 (1205)
T ss_pred             ccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEeecC--CcchhheeeeeeccC
Confidence            335567888888888888888777655556777766433223334444555666666666433  355555555555555


Q ss_pred             ccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEee
Q 014962          134 QRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGF  213 (415)
Q Consensus       134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~  213 (415)
                      .+. +|-.|+.+.+|+.                                             +-+ -+  ....++.|++
T Consensus       889 ~~~-~~~~v~~~~~~~l---------------------------------------------~~~-~~--~~g~~ytyk~  919 (1205)
T KOG1898|consen  889 EYQ-PFVAVGVATTEQL---------------------------------------------DSK-SI--SSGFVYTYKF  919 (1205)
T ss_pred             CCc-eEEEEEeeccccc---------------------------------------------ccc-cc--CCCceEEEEE
Confidence            554 4444443333321                                             111 11  4445677777


Q ss_pred             CCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCC-cceeEEEEeeeCCeEEEeCC
Q 014962          214 PNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPS-QRLVADCVLMDVDTAVVSDR  292 (415)
Q Consensus       214 ~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~-~~~vta~~~Ld~d~~l~aD~  292 (415)
                      -..+ +.|.-.....++..+..|...++++++|=   +=.|+-|+--+++|.--++--. |..++.+.- ....++++|.
T Consensus       920 ~~~g-~~lellh~T~~~~~v~Ai~~f~~~~Lagv---G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-~~~RI~VgD~  994 (1205)
T KOG1898|consen  920 VRNG-DKLELLHKTEIPGPVGAICPFQGRVLAGV---GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT-YGARIVVGDI  994 (1205)
T ss_pred             EecC-ceeeeeeccCCCccceEEeccCCEEEEec---ccEEEEeeCChHHHHhhhhhccCceEEEEEee-cceEEEEeec
Confidence            5433 23444333445557888888888888752   2235556655555544444433 444444433 5668899999


Q ss_pred             CCcEEEEecCC
Q 014962          293 KGSIAVLSCSD  303 (415)
Q Consensus       293 ~gNl~vl~~~~  303 (415)
                      .-.++.+++.+
T Consensus       995 qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  995 QESVHFVRYRR 1005 (1205)
T ss_pred             cceEEEEEEec
Confidence            88888888766

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=84.86  E-value=29  Score=33.03  Aligned_cols=111  Identities=10%  Similarity=0.151  Sum_probs=58.9

Q ss_pred             eEEEeeeC--CceEEEEeCCeEEEEeeCCCCcccee-------------ee-eeeccceEEEEEEEeCCEEEEeecCCcE
Q 014962          189 VLAICPYL--DRYFLASAGNAFYVCGFPNDNPQRVR-------------RF-AVGRTRFMIMLLTAHFTRIAVGDCRDGI  252 (415)
Q Consensus       189 V~al~~~~--g~yLl~~vg~~l~v~~~~~~~~~~L~-------------~~-a~~~~~~~i~sI~~~~n~IlVGD~~~Sv  252 (415)
                      |..|..+.  +. |++=.++.|++|++..-......             +. ...+..++...-...+.+.++.=..+.+
T Consensus        38 I~ql~vl~~~~~-llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNL-LLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCE-EEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            77777776  56 66667889999998741100000             11 1112222331222345667777777899


Q ss_pred             EEEEEEccCCeE-EEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          253 LFYSYHEDARKL-EQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       253 ~ll~y~~~~~~L-~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      .++.|+...+++ ..+..=..+..+.++.++ .+.++++-+. .+.++..+
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~~-~f~~idl~  165 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTSK-GFYLIDLN  165 (275)
T ss_pred             EEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeCC-ceEEEecC
Confidence            999999854444 222222234455566666 4444444322 24445544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=84.79  E-value=42  Score=33.00  Aligned_cols=238  Identities=13%  Similarity=0.069  Sum_probs=130.9

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEe--CCCCcEEEEEeCCCCCeEEEEEEEEECC-eeEEEEeeecCCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVD--PLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSLSSGP   92 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d--~~t~~~i~s~~l~~~E~~~si~~~~l~~-~~~lvVGT~~~~~~   92 (415)
                      ++.|+|+++|.+++++.+.-+-.       +-+..  ...|++++.+|=.+||.    +++.+.. ..||+-.+--    
T Consensus        62 rsVRsvAwsp~g~~La~aSFD~t-------~~Iw~k~~~efecv~~lEGHEnEV----K~Vaws~sG~~LATCSRD----  126 (312)
T KOG0645|consen   62 RSVRSVAWSPHGRYLASASFDAT-------VVIWKKEDGEFECVATLEGHENEV----KCVAWSASGNYLATCSRD----  126 (312)
T ss_pred             heeeeeeecCCCcEEEEeeccce-------EEEeecCCCceeEEeeeeccccce----eEEEEcCCCCEEEEeeCC----
Confidence            58999999999998887765432       22322  35588999888888884    6666764 4787755331    


Q ss_pred             CCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccc
Q 014962           93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET  172 (415)
Q Consensus        93 ~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  172 (415)
                                  -.+.++++.+                                             ++      ..|+ 
T Consensus       127 ------------KSVWiWe~de---------------------------------------------dd------Efec-  142 (312)
T KOG0645|consen  127 ------------KSVWIWEIDE---------------------------------------------DD------EFEC-  142 (312)
T ss_pred             ------------CeEEEEEecC---------------------------------------------CC------cEEE-
Confidence                        2467777773                                             10      0111 


Q ss_pred             ccceEEEEEEEecCCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccce-EEEEE--EEeCCEEEEee
Q 014962          173 ETWQLRLAYSTTWPGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLL--TAHFTRIAVGD  247 (415)
Q Consensus       173 ~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~-~i~sI--~~~~n~IlVGD  247 (415)
                        ...-.=|.+++++.+-.  +-.+  ||++  --+.|.+|+...++.  +.-++.++... .+-++  ...|++++.++
T Consensus       143 --~aVL~~HtqDVK~V~WH--Pt~d--lL~S~SYDnTIk~~~~~~ddd--W~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  143 --IAVLQEHTQDVKHVIWH--PTED--LLFSCSYDNTIKVYRDEDDDD--WECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             --EeeeccccccccEEEEc--CCcc--eeEEeccCCeEEEEeecCCCC--eeEEEEecCccceEEEEEecCCCceEEEec
Confidence              01112244455543322  3233  4544  457788887774321  33333333332 33333  45677888877


Q ss_pred             cCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccc
Q 014962          248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIA  327 (415)
Q Consensus       248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~V  327 (415)
                      =-.-+.++++...      + -+.+.+.+..+.-- .+.+..+=.++-|.+|+-...   ...|...|...-+--.+.-|
T Consensus       215 dD~tv~Iw~~~~~------~-~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~---~d~p~~~l~~~~~~aHe~dV  283 (312)
T KOG0645|consen  215 DDGTVSIWRLYTD------L-SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDS---PDEPSWNLLAKKEGAHEVDV  283 (312)
T ss_pred             CCcceEeeeeccC------c-chhcccceEeeeec-ccceEeccCCCEEEEEEecCC---CCCchHHHHHhhhccccccc
Confidence            7767766764311      0 12344445444433 556666667778888884421   12233333332222335578


Q ss_pred             cEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEE
Q 014962          328 VSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVI  370 (415)
Q Consensus       328 t~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~  370 (415)
                      |+++      .+|             +.+..++-++-+|.|-+
T Consensus       284 NsV~------w~p-------------~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  284 NSVQ------WNP-------------KVSNRLASGGDDGIVNF  307 (312)
T ss_pred             ceEE------EcC-------------CCCCceeecCCCceEEE
Confidence            8774      222             33456777777877654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=84.68  E-value=17  Score=38.65  Aligned_cols=132  Identities=13%  Similarity=0.125  Sum_probs=73.8

Q ss_pred             EEecCCceEEEeeeCCceEEEEeC---CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEE
Q 014962          182 STTWPGMVLAICPYLDRYFLASAG---NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       182 ~~~~~g~V~al~~~~g~yLl~~vg---~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~  258 (415)
                      +.++.-.+.+++.-.++ =.+|||   .+|++|.+..+....--++.-+..+...++....+.++++||+++=+.++...
T Consensus       439 ~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~  517 (603)
T KOG0318|consen  439 SIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA  517 (603)
T ss_pred             eeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence            33343344444433333 124444   56999999874311111223445555666777788999999999999776544


Q ss_pred             ccCCeEEEEecCCCccee------EEEEee-eCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEE
Q 014962          259 EDARKLEQIYCDPSQRLV------ADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIR  331 (415)
Q Consensus       259 ~~~~~L~~varD~~~~~v------ta~~~L-d~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~  331 (415)
                      ..+  .      -..+|.      .++.-- +...+..+--+-|++++.+..       |... ..+-.-|.+. ||++.
T Consensus       518 s~~--~------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k-------P~~~-i~iknAH~~g-Vn~v~  580 (603)
T KOG0318|consen  518 SRE--V------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK-------PAKH-IIIKNAHLGG-VNSVA  580 (603)
T ss_pred             cCc--e------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC-------hhhh-eEeccccccC-ceeEE
Confidence            322  1      233444      222211 233566667788999998643       2223 3444556666 88764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=84.67  E-value=19  Score=37.68  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=75.2

Q ss_pred             eCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCC
Q 014962           13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGP   92 (415)
Q Consensus        13 ~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~   92 (415)
                      .=+.-...+++.|....++-+.        .+.|++.|-.++-.+-.-.+.-+-+|+|+....  +..-++-|       
T Consensus       194 nhg~pVe~vl~lpsgs~iasAg--------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s--~~~rLlS~-------  256 (487)
T KOG0310|consen  194 NHGCPVESVLALPSGSLIASAG--------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS--DSTRLLSG-------  256 (487)
T ss_pred             cCCCceeeEEEcCCCCEEEEcC--------CCeEEEEEecCCceehhhhhcccceEEEEEeec--CCceEeec-------
Confidence            3344556666766655555443        467999998866544333444677888887764  22333322       


Q ss_pred             CCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccc
Q 014962           93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET  172 (415)
Q Consensus        93 ~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  172 (415)
                               .--|++-+|++.                                                           
T Consensus       257 ---------sLD~~VKVfd~t-----------------------------------------------------------  268 (487)
T KOG0310|consen  257 ---------SLDRHVKVFDTT-----------------------------------------------------------  268 (487)
T ss_pred             ---------ccccceEEEEcc-----------------------------------------------------------
Confidence                     124677888855                                                           


Q ss_pred             ccceEEEEEEEecCCceEEEeeeCC-ceEEEEeCCeEEEEe
Q 014962          173 ETWQLRLAYSTTWPGMVLAICPYLD-RYFLASAGNAFYVCG  212 (415)
Q Consensus       173 ~~~~L~l~~~~~~~g~V~al~~~~g-~yLl~~vg~~l~v~~  212 (415)
                         .++++|.-.++|||.+|.-..| ..+++|.++-+..+.
T Consensus       269 ---~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  269 ---NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ---ceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence               5788999999999999998764 558899998877666

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=84.41  E-value=44  Score=33.22  Aligned_cols=122  Identities=13%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             eEEEEEEEecCC---ceEEEeeeC-CceEE-EEeCCeEEEEeeCCCCccceeeeeeeccc---eEEEEEEEeCCEEEEee
Q 014962          176 QLRLAYSTTWPG---MVLAICPYL-DRYFL-ASAGNAFYVCGFPNDNPQRVRRFAVGRTR---FMIMLLTAHFTRIAVGD  247 (415)
Q Consensus       176 ~L~l~~~~~~~g---~V~al~~~~-g~yLl-~~vg~~l~v~~~~~~~~~~L~~~a~~~~~---~~i~sI~~~~n~IlVGD  247 (415)
                      +++.-....++|   .|+++.--. .++|| ++...+|+||+---.++.     .....+   .+.......+++|.+|-
T Consensus        42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----haipl~s~WVMtCA~sPSg~~VAcGG  116 (343)
T KOG0286|consen   42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----HAIPLPSSWVMTCAYSPSGNFVACGG  116 (343)
T ss_pred             eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----eEEecCceeEEEEEECCCCCeEEecC
Confidence            444444455554   577777443 35354 346778999987643321     111112   14555667899999999


Q ss_pred             cCCcEEEEEEEcc-CCeEEEEecCC--CcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          248 CRDGILFYSYHED-ARKLEQIYCDP--SQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       248 ~~~Sv~ll~y~~~-~~~L~~varD~--~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      +-.=.++|..... ......+.|..  +...+++|.|+|+..+|.+-.+.-......+
T Consensus       117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie  174 (343)
T KOG0286|consen  117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE  174 (343)
T ss_pred             cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc
Confidence            9887777777632 23334444443  3558899999998888887666555555543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.29  E-value=17  Score=39.90  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=96.5

Q ss_pred             eeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCC
Q 014962           43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS  122 (415)
Q Consensus        43 ~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~  122 (415)
                      +..|-|++..+++... +..+-.+.+++++++. .++.++|.||+                +||+-+|.+.+        
T Consensus        54 ~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs-~~e~lvAagt~----------------~g~V~v~ql~~--------  107 (726)
T KOG3621|consen   54 AGSVYLYNRHTGEMRK-LKNEGATGITCVRSVS-SVEYLVAAGTA----------------SGRVSVFQLNK--------  107 (726)
T ss_pred             cceEEEEecCchhhhc-ccccCccceEEEEEec-chhHhhhhhcC----------------CceEEeehhhc--------
Confidence            4567778777665432 2333345555444432 24578888887                79999999983        


Q ss_pred             ccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEec--CCceEEEeeeC-Cce
Q 014962          123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTW--PGMVLAICPYL-DRY  199 (415)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~--~g~V~al~~~~-g~y  199 (415)
                                                        .+|               ..+.++...+.  +--|+|++--. |+-
T Consensus       108 ----------------------------------~~p---------------~~~~~~t~~d~~~~~rVTal~Ws~~~~k  138 (726)
T KOG3621|consen  108 ----------------------------------ELP---------------RDLDYVTPCDKSHKCRVTALEWSKNGMK  138 (726)
T ss_pred             ----------------------------------cCC---------------CcceeeccccccCCceEEEEEecccccE
Confidence                                              112               14555555555  67799999553 432


Q ss_pred             EEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc--ee
Q 014962          200 FLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR--LV  276 (415)
Q Consensus       200 Ll~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~--~v  276 (415)
                      |..|= -.+|..-.+.....-+............|+.|+....+++|..+.+++-+   +.+..++..|++-+...  ..
T Consensus       139 ~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc---~tE~eti~QIG~k~R~~~~~~  215 (726)
T KOG3621|consen  139 LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILC---QTEAETITQIGKKPRKSLIDF  215 (726)
T ss_pred             EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhhee---ecchhHHHHhcCCCcCCcccc
Confidence            55542 23344444443000001111122334579999999999999999999844   45555677777766665  44


Q ss_pred             EEEEeee
Q 014962          277 ADCVLMD  283 (415)
Q Consensus       277 ta~~~Ld  283 (415)
                      -||.|-.
T Consensus       216 GACF~~g  222 (726)
T KOG3621|consen  216 GACFFPG  222 (726)
T ss_pred             ceEEeec
Confidence            5555543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=84.19  E-value=11  Score=40.86  Aligned_cols=112  Identities=8%  Similarity=0.066  Sum_probs=76.5

Q ss_pred             CCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962          186 PGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       186 ~g~V~al~~~~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      +.+||+++.-+...++++  ..+.|++|+...  .+++.+..-+..+..+.-+...|.+++-|-.---+-++....+.-.
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEecccc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            456888885544335554  334489999986  3445555556667778888888999999888777777776654433


Q ss_pred             EEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962          264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       264 L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~  301 (415)
                      ...++-+ ...|...+. -+.+.+..+|++|||+.-.+
T Consensus       249 ~T~~vH~-e~VWaL~~~-~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  249 ATYIVHK-EGVWALQSS-PSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             eeEEecc-CceEEEeeC-CCcceEEecCCCCcEEeccc
Confidence            4433333 447877776 24568999999999987664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=84.13  E-value=26  Score=35.25  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             EEEEeCCCCcEEEEEe-CCCCCeEEEEEEEEECC-eeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962           46 ICCVDPLSGSVLSSFK-LELGETGKSMELVRVGH-EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH  114 (415)
Q Consensus        46 i~l~d~~t~~~i~s~~-l~~~E~~~si~~~~l~~-~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~  114 (415)
                      |++.|.-|++.-.+|. .+.-+++++..++.|.. .++|..|=                 +-.|.+|.+.+
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-----------------krcirvFdt~R  188 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-----------------KRCIRVFDTSR  188 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-----------------cceEEEeeccC
Confidence            9999999999888877 44558888888888874 46777672                 23577888863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=84.05  E-value=49  Score=33.18  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=17.8

Q ss_pred             eeEEEEeCCCCcEEEEEeCCC
Q 014962           44 SDICCVDPLSGSVLSSFKLEL   64 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~   64 (415)
                      ..|..+|+.+++.+.++++..
T Consensus        75 g~v~a~d~~tG~~~W~~~~~~   95 (377)
T TIGR03300        75 GTVVALDAETGKRLWRVDLDE   95 (377)
T ss_pred             CeEEEEEccCCcEeeeecCCC
Confidence            458889999999999888875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.23  E-value=4.7  Score=38.12  Aligned_cols=73  Identities=16%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             eEEEEEEEecCCce--EEEeeeCCceEEEEeCCeEEEEeeCCCCc--cceeeee------eeccceEEEEEEEeCCEEEE
Q 014962          176 QLRLAYSTTWPGMV--LAICPYLDRYFLASAGNAFYVCGFPNDNP--QRVRRFA------VGRTRFMIMLLTAHFTRIAV  245 (415)
Q Consensus       176 ~L~l~~~~~~~g~V--~al~~~~g~yLl~~vg~~l~v~~~~~~~~--~~L~~~a------~~~~~~~i~sI~~~~n~IlV  245 (415)
                      .++.+ +-+.+.++  .|.|+..|. ||+|.++++.+|.++...-  ..+.-..      .+...+.+..+..++++|.+
T Consensus       125 qleii-ElPl~~~p~ciaCC~~tG~-LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~  202 (215)
T PF14761_consen  125 QLEII-ELPLSEPPLCIACCPVTGN-LLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAV  202 (215)
T ss_pred             ceEEE-EecCCCCCCEEEecCCCCC-EEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEE
Confidence            35555 45666554  455688999 9999999999999985210  1111112      22334568888889999988


Q ss_pred             eecCC
Q 014962          246 GDCRD  250 (415)
Q Consensus       246 GD~~~  250 (415)
                      -+-.+
T Consensus       203 ~s~~e  207 (215)
T PF14761_consen  203 MSDLE  207 (215)
T ss_pred             ecCCE
Confidence            65443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=83.15  E-value=12  Score=39.09  Aligned_cols=114  Identities=11%  Similarity=0.073  Sum_probs=76.8

Q ss_pred             CCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc-CC
Q 014962          186 PGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED-AR  262 (415)
Q Consensus       186 ~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~-~~  262 (415)
                      +--|++|.-- .|-.|+.| -+..+++|+...   .++..+.+++.|++..+=.-.|++|+-|+.-+-..++.-... ..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence            3558888844 35523334 345578888764   467777888888766666678899999999888866643222 12


Q ss_pred             eEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcC
Q 014962          263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLE  306 (415)
Q Consensus       263 ~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~  306 (415)
                      +-.+++.-+    ...++-.+++.|..++.+|-|+|+++..+.+
T Consensus       312 q~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P  351 (524)
T KOG0273|consen  312 QQFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGEDRP  351 (524)
T ss_pred             EeeeeccCC----ccceEEecCceEeecCCCceEEEEEecCCCc
Confidence            222222221    3456667889999999999999999877544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=83.07  E-value=16  Score=34.86  Aligned_cols=67  Identities=7%  Similarity=0.059  Sum_probs=44.4

Q ss_pred             ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEE
Q 014962          198 RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQI  267 (415)
Q Consensus       198 ~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~v  267 (415)
                      ++|++++..+|.+|+|..+..+..+....+..+-.+.+|...++.|+||. .++..++..+  ++....+
T Consensus       106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~-~~~f~~idl~--~~~~~~l  172 (275)
T PF00780_consen  106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT-SKGFYLIDLN--TGSPSEL  172 (275)
T ss_pred             eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe-CCceEEEecC--CCCceEE
Confidence            55899999999999998742111022233555667888888899999998 5556555554  3444444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=82.42  E-value=11  Score=40.47  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             CcCCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEE-EEeCCCCCeEEEEEEEEECCee
Q 014962            2 VHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS-SFKLELGETGKSMELVRVGHEQ   80 (415)
Q Consensus         2 ~~~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~-s~~l~~~E~~~si~~~~l~~~~   80 (415)
                      +.+|+..+.+|||+..+..-+.+|+...++++|.|-       +|.|+|..+..+.. ..+|.     -....| -.+..
T Consensus       246 ~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg-------SiiLyD~~~~~t~~~ka~~~-----P~~iaW-Hp~ga  312 (545)
T PF11768_consen  246 NKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG-------SIILYDTTRGVTLLAKAEFI-----PTLIAW-HPDGA  312 (545)
T ss_pred             CceeEEEEEEEecCCcceEEecCcccceEEEEecCC-------eEEEEEcCCCeeeeeeeccc-----ceEEEE-cCCCc
Confidence            357889999999999999999999999999998664       69999997764331 11221     112222 13558


Q ss_pred             EEEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        81 ~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      +|+||..                +|.|..|++.
T Consensus       313 i~~V~s~----------------qGelQ~FD~A  329 (545)
T PF11768_consen  313 IFVVGSE----------------QGELQCFDMA  329 (545)
T ss_pred             EEEEEcC----------------CceEEEEEee
Confidence            9999954                8999999998

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=82.41  E-value=14  Score=37.82  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             CCceEEEEeCCe-EEEEeeCCCCc--cceeeeeeeccceEEEEEEEeCCEEEEeecCCcE-EEEEEEccCCeEEEEecCC
Q 014962          196 LDRYFLASAGNA-FYVCGFPNDNP--QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGI-LFYSYHEDARKLEQIYCDP  271 (415)
Q Consensus       196 ~g~yLl~~vg~~-l~v~~~~~~~~--~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv-~ll~y~~~~~~L~~varD~  271 (415)
                      .|++|.++.+.+ .+++.+...++  +++...++-. ...+.+.......++|+|-..=+ .+-.+........++....
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhv  151 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHV  151 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhh
Confidence            467556677777 45888875432  2333323322 33444555566678888865433 2223332223333332221


Q ss_pred             CcceeEEEEee-eCCeEEEeCCCCcEEEEecCCC
Q 014962          272 SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDR  304 (415)
Q Consensus       272 ~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~~  304 (415)
                        .-++++.+. |+..+|.+|+++.|++.++|..
T Consensus       152 --Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~  183 (390)
T KOG3914|consen  152 --SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT  183 (390)
T ss_pred             --hhhheeeecCCCCEEEEecCCceEEEEecCcc
Confidence              123444544 4458999999999999999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=82.34  E-value=31  Score=35.46  Aligned_cols=112  Identities=9%  Similarity=0.137  Sum_probs=76.7

Q ss_pred             CceEEEeee--CCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962          187 GMVLAICPY--LDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       187 g~V~al~~~--~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      ++|.++. |  .|++|+-+.|.. +++|++.-..  -+..+--++.=...++....+..|+-|..--++.+  |++..++
T Consensus       116 e~Vl~~~-fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~  190 (480)
T KOG0271|consen  116 EAVLSVQ-FSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQ  190 (480)
T ss_pred             CcEEEEE-ecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCC
Confidence            5666654 3  355577777765 7899997532  13343344443455566678888888888888854  6787777


Q ss_pred             EEEEecCCCcceeEEEEe----eeC--CeEEEeCCCCcEEEEecCC
Q 014962          264 LEQIYCDPSQRLVADCVL----MDV--DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       264 L~~varD~~~~~vta~~~----Ld~--d~~l~aD~~gNl~vl~~~~  303 (415)
                      .+--+--.+..|+++..+    ++.  ..+..+-++|++++.....
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~  236 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL  236 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence            666666667889998885    333  3678888899999998654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=82.01  E-value=63  Score=32.95  Aligned_cols=56  Identities=16%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEee---CCCcceeeEEEEeCCCCcEEEEEeCCCC
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTEL---NNDTCSSDICCVDPLSGSVLSSFKLELG   65 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~---~~~~~~s~i~l~d~~t~~~i~s~~l~~~   65 (415)
                      +..||.+..||-+ .+|+.+.+.|+++-.   .-++..-.|.++|..|.+.+..+.+++.
T Consensus        40 ~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        40 LGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             EEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence            4789999999986 999999988887632   2244456799999999999999998766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=81.95  E-value=44  Score=36.92  Aligned_cols=113  Identities=8%  Similarity=0.075  Sum_probs=71.9

Q ss_pred             CCceEEEeeeC--CceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEcc
Q 014962          186 PGMVLAICPYL--DRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       186 ~g~V~al~~~~--g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      ++-|+.|+-++  ..+|++|.|.. +.+|+......+.++.  -.+   .+.+++  ..|.+|+-|---+|+-|+|++..
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G--H~e---~vlSL~~~~~g~llat~sKD~svilWr~~~~  397 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG--HTE---AVLSLDVWSSGDLLATGSKDKSVILWRLNNN  397 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC--chh---heeeeeecccCcEEEEecCCceEEEEEecCC
Confidence            45566777554  14488888876 8899776543332221  111   477777  45668888888899999999766


Q ss_pred             CCeEEEEecCC-CcceeEEEEee--eCCeEEEeCCCCcEEEEecCC
Q 014962          261 ARKLEQIYCDP-SQRLVADCVLM--DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       261 ~~~L~~varD~-~~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ..++..+|.-. ....|+++.+-  ...-++.+-.++-|-+..++.
T Consensus       398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~  443 (775)
T KOG0319|consen  398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK  443 (775)
T ss_pred             cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence            66666665543 34456666652  223456666777777777665

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=81.93  E-value=13  Score=40.10  Aligned_cols=99  Identities=22%  Similarity=0.369  Sum_probs=76.9

Q ss_pred             eeEEEEeCCC--ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEe--CCCCcEEEEEeCCCCCeEEEEEEEEECCe-eE
Q 014962            7 LNVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVD--PLSGSVLSSFKLELGETGKSMELVRVGHE-QV   81 (415)
Q Consensus         7 ~~i~~i~L~~--tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d--~~t~~~i~s~~l~~~E~~~si~~~~l~~~-~~   81 (415)
                      ...|||.+.+  +|.-|+|+|..++.+|+..-      ...|.++.  +.+.--++.++|+.+|+...+|..  .++ =.
T Consensus       328 T~trKV~IPGILvPDliAfn~kaq~VAVASNT------cn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFl--tdklLL  399 (671)
T PF15390_consen  328 TTTRKVSIPGILVPDLIAFNPKAQVVAVASNT------CNIILVYSVTPSSMPNIQQIQLESNERPKGICFL--TDKLLL  399 (671)
T ss_pred             EEeeeeccccccccceeeeCCcCCEEEEEecC------CcEEEEEEeccccCCCeeEEEcccCCCCceeeEc--cCCeEE
Confidence            4568888888  99999999999999999622      22355544  566778899999999999988764  444 46


Q ss_pred             EEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           82 LVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        82 lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      +.||--...++.++|..+...-.=|+.+.++.
T Consensus       400 ilVGkqK~td~aFLPSS~sd~Y~irL~vkEv~  431 (671)
T PF15390_consen  400 ILVGKQKSTDPAFLPSSKSDKYIIRLMVKEVM  431 (671)
T ss_pred             EEeccccCCCcccCCCCccccEEEEEEEEEee
Confidence            67898887788999987777777788887777

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=81.89  E-value=52  Score=31.89  Aligned_cols=114  Identities=11%  Similarity=0.074  Sum_probs=76.8

Q ss_pred             EecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962          183 TTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       183 ~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      .+.+..|.+|.-- +..++++ +-.+++.|++..   ..+.. ..+.-|...+++...+|..++|-+--++-|+  +++.
T Consensus       142 dea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~---G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLl--Dk~t  214 (307)
T KOG0316|consen  142 DEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRK---GTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLL--DKET  214 (307)
T ss_pred             hhhcCceeEEEec-ccEEEeeccCCcEEEEEeec---ceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeec--ccch
Confidence            4567788887744 5425654 778899999986   23444 3444466666667788999999988888776  4556


Q ss_pred             CeEEEEecCC-CcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962          262 RKLEQIYCDP-SQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       262 ~~L~~varD~-~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~  303 (415)
                      ++|...-+-. +.-.=+.|.+...+ .++.+-.+|-+|++.+-+
T Consensus       215 GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  215 GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence            6554433332 23344566777665 677778899999998654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.76  E-value=11  Score=38.57  Aligned_cols=99  Identities=15%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             eeeEEEEeCCCCc-EEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCC
Q 014962           43 SSDICCVDPLSGS-VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCG  121 (415)
Q Consensus        43 ~s~i~l~d~~t~~-~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~  121 (415)
                      -+.+|++|+.... .+.+|.|.  |.+.+.. -.+.+..+|++|++                +|-+-.|++..       
T Consensus       225 ~hqvR~YDt~~qRRPV~~fd~~--E~~is~~-~l~p~gn~Iy~gn~----------------~g~l~~FD~r~-------  278 (412)
T KOG3881|consen  225 YHQVRLYDTRHQRRPVAQFDFL--ENPISST-GLTPSGNFIYTGNT----------------KGQLAKFDLRG-------  278 (412)
T ss_pred             ceeEEEecCcccCcceeEeccc--cCcceee-eecCCCcEEEEecc----------------cchhheecccC-------
Confidence            3579999998875 77877776  5554432 22345578888876                55666666662       


Q ss_pred             CccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCC-ceE
Q 014962          122 SMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLD-RYF  200 (415)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g-~yL  200 (415)
                                                                           .+|--..-..+.|.+.+|.-..+ + +
T Consensus       279 -----------------------------------------------------~kl~g~~~kg~tGsirsih~hp~~~-~  304 (412)
T KOG3881|consen  279 -----------------------------------------------------GKLLGCGLKGITGSIRSIHCHPTHP-V  304 (412)
T ss_pred             -----------------------------------------------------ceeeccccCCccCCcceEEEcCCCc-e
Confidence                                                                 13333334667888999887766 5 7


Q ss_pred             EEEeCCe--EEEEeeCCCCccceee
Q 014962          201 LASAGNA--FYVCGFPNDNPQRVRR  223 (415)
Q Consensus       201 l~~vg~~--l~v~~~~~~~~~~L~~  223 (415)
                      |+++|=.  |+||+.+.  .++|.+
T Consensus       305 las~GLDRyvRIhD~kt--rkll~k  327 (412)
T KOG3881|consen  305 LASCGLDRYVRIHDIKT--RKLLHK  327 (412)
T ss_pred             EEeeccceeEEEeeccc--chhhhh
Confidence            7776654  77888875  355554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=81.58  E-value=9.6  Score=40.89  Aligned_cols=99  Identities=13%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             EEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC----eEEEEec-CC---
Q 014962          200 FLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR----KLEQIYC-DP---  271 (415)
Q Consensus       200 Ll~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~----~L~~var-D~---  271 (415)
                      +++|.|..||-+++.+  .+.|...+.--....+++|.....+|.+|..--.|-|+  ++-..    .|..... +.   
T Consensus       149 y~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw--DpR~ksrv~~l~~~~~v~s~pg  224 (703)
T KOG2321|consen  149 YLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW--DPRDKSRVGTLDAASSVNSHPG  224 (703)
T ss_pred             EEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEecccCceEEEe--cchhhhhheeeecccccCCCcc
Confidence            7899999999999987  46788777665677888999899999999988777665  33222    2222111 11   


Q ss_pred             --CcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962          272 --SQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       272 --~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~  302 (415)
                        ....|||+.|=|+. ++.++-+.|.++++.+-
T Consensus       225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             ccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence              23459999998766 88999999999988753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=81.56  E-value=55  Score=34.81  Aligned_cols=97  Identities=12%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             EEEEecCCceEEEeeeCCceEEEEeC--CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEE
Q 014962          180 AYSTTWPGMVLAICPYLDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY  257 (415)
Q Consensus       180 ~~~~~~~g~V~al~~~~g~yLl~~vg--~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y  257 (415)
                      +|+-+..|.  |+++.+.. |+++||  .+|++|+.+.   +.+.++-.+..|+..+....+|-++++|...-=+.+|..
T Consensus       206 ~HsAP~~gi--cfspsne~-l~vsVG~Dkki~~yD~~s---~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  206 AHSAPCRGI--CFSPSNEA-LLVSVGYDKKINIYDIRS---QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             hccCCcCcc--eecCCccc-eEEEecccceEEEeeccc---ccccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence            455544443  45588888 888877  5688999884   567777788889988888889999999988887765554


Q ss_pred             EccCCeEEEEecCCCcceeEEEEeeeC
Q 014962          258 HEDARKLEQIYCDPSQRLVADCVLMDV  284 (415)
Q Consensus       258 ~~~~~~L~~varD~~~~~vta~~~Ld~  284 (415)
                      +..+.-+..  +......|+++.|-..
T Consensus       280 R~~k~Pv~v--~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  280 RSTKAPVAV--RSAHDASVTRVAFQPS  304 (673)
T ss_pred             ccCCCCceE--eeecccceeEEEeeec
Confidence            433322222  2222334777776433

>PHA02713 hypothetical protein; Provisional

Probab=81.43  E-value=66  Score=34.76  Aligned_cols=81  Identities=10%  Similarity=-0.028  Sum_probs=52.2

Q ss_pred             eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---------------------cEEEEEEEccCCeE
Q 014962          207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---------------------GILFYSYHEDARKL  264 (415)
Q Consensus       207 ~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---------------------Sv~ll~y~~~~~~L  264 (415)
                      .+..|++..   ..+...+....+..-..+.+.+++|+| |-...                     .-.+..|+++.++-
T Consensus       368 sve~Ydp~~---~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W  444 (557)
T PHA02713        368 TIECYTMGD---DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW  444 (557)
T ss_pred             eEEEEECCC---CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence            477888875   335555544444344455567787776 43211                     23478999999999


Q ss_pred             EEEecCCCcceeEEEEeeeCCeEEEe
Q 014962          265 EQIYCDPSQRLVADCVLMDVDTAVVS  290 (415)
Q Consensus       265 ~~varD~~~~~vta~~~Ld~d~~l~a  290 (415)
                      ..++.=..+|.-.++..+++.-++.+
T Consensus       445 ~~v~~m~~~r~~~~~~~~~~~IYv~G  470 (557)
T PHA02713        445 ETLPNFWTGTIRPGVVSHKDDIYVVC  470 (557)
T ss_pred             eecCCCCcccccCcEEEECCEEEEEe
Confidence            98887667776667777777755544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=80.52  E-value=41  Score=35.27  Aligned_cols=116  Identities=9%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             EecCCceEEEeeeCC--ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCC-EEEEeecCCcEEEEEEEc
Q 014962          183 TTWPGMVLAICPYLD--RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFT-RIAVGDCRDGILFYSYHE  259 (415)
Q Consensus       183 ~~~~g~V~al~~~~g--~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n-~IlVGD~~~Sv~ll~y~~  259 (415)
                      .+..+++++|.=..+  -.|+++.+..+.+|.+...-..+|...-+-+.|+....+...|. .|+.+--  .=+++.|+-
T Consensus       210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--rky~ysyDl  287 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--RKYLYSYDL  287 (514)
T ss_pred             CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc--ceEEEEeec
Confidence            344588888874444  22567889999999997532346777666677777777777887 6665543  345789998


Q ss_pred             cCCeEEEEecCCCcc--eeEEEEee-eCCeEEEeCCCCcEEEEe
Q 014962          260 DARKLEQIYCDPSQR--LVADCVLM-DVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       260 ~~~~L~~varD~~~~--~vta~~~L-d~d~~l~aD~~gNl~vl~  300 (415)
                      +..++..+.+=+..-  .+-.-+.- |...++.+-.+|-|++|.
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh  331 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH  331 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh
Confidence            888888776544322  22222222 233556667788888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	1e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158

 Score =  162 bits (410), Expect = 1e-43
 Identities = 68/416 (16%), Positives = 140/416 (33%), Gaps = 38/416 (9%)

Query: 1    MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
            +   ++L++R   L  +P+K+ Y   S+   V+ + +     S     + P + +   S 
Sbjct: 722  IDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSS 781

Query: 61   KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLC-IEHMQNSD 119
             +   +   S                  S G  +         +    VL   + +QN  
Sbjct: 782  SVSSSKLFSSSTAPH-----------ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEY 830

Query: 120  CGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRL 179
              S+  C      +        IVG A        +     +     I + +    +L+ 
Sbjct: 831  ALSLVSCKLGKDPNTY-----FIVGTAM-------VYPEEAEPKQGRIVVFQYSDGKLQT 878

Query: 180  AYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH 239
                   G V ++  +  +  LAS  +   +  +  +  + +R         M + L   
Sbjct: 879  VAEKEVKGAVYSMVEFNGK-LLASINSTVRLYEWTTE--KELRTECNHYNNIMALYLKTK 935

Query: 240  FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVL 299
               I VGD    +L  +Y       E+I  D +   ++   ++D D  + ++   ++ V 
Sbjct: 936  GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 995

Query: 300  SCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTI 359
               D          +L     +H+GE       GS + +   + +          +Q ++
Sbjct: 996  QK-DSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETST--------PTQGSV 1046

Query: 360  IASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK 415
            +  T+ G I +   +S   Y LL  +Q RL        +   +HS +RS     + 
Sbjct: 1047 LFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKV--IKSVGKIEHSFWRSFHTERKT 1100

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 43/321 (13%), Positives = 96/321 (29%), Gaps = 79/321 (24%)

Query: 18  PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSM--ELVR 75
               L   E + L++   +        ++   +P     LS     + + G +       
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRD-GLATWDNWKH 349

Query: 76  VGHEQVL-VVGTSLSS-GP----------AIMPSGEAESTKGRLIVLCI--EHMQNSDCG 121
           V  +++  ++ +SL+   P          ++ P     S     I+L +    +  SD  
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAHIPTILLSLIWFDVIKSDVM 405

Query: 122 S-MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET--ETWQLR 178
             +    K     ++          +   +         ++ +     L  +  + + + 
Sbjct: 406 VVVNKLHKYSLVEKQPKEST----ISIPSIYLELKVKLENEYA-----LHRSIVDHYNIP 456

Query: 179 LAYSTTWPGMVLAICPYLDRYF-------LASAGNAFYVCGFP----NDN--PQRVRR-- 223
             +      ++    PYLD+YF       L +  +   +  F     +     Q++R   
Sbjct: 457 KTFD--SDDLIP---PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 224 FAVGRTRFMIMLLT-------------AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCD 270
            A   +  ++  L                + R+ V    D   F    E     E + C 
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERL-VNAILD---FLPKIE-----ENLICS 562

Query: 271 PSQRLVADCVLMDVDTAVVSD 291
               L+    LM  D A+  +
Sbjct: 563 KYTDLL-RIALMAEDEAIFEE 582

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.82
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.81
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.81
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.8
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.79
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.75
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.74
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.73
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.66
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.66
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.64
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.63
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.63
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.63
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.62
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.62
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.61
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.59
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.57
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.57
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.57
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.55
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.54
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.54
3jro_A	753	Fusion protein of protein transport protein SEC13	97.54
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.53
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.52
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.51
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.51
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.51
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.49
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.48
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.46
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.45
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.44
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.44
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.4
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.39
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.37
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.36
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.36
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.35
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.32
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.29
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.29
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.29
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.23
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.23
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.14
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.14
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.13
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.13
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.07
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.07
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.06
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.01
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.99
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.89
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.89
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.87
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.77
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.75
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.72
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.66
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.66
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.62
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.62
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.6
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.58
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.57
3jro_A	753	Fusion protein of protein transport protein SEC13	96.55
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.54
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.35
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.34
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.33
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.33
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.29
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.21
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.2
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.16
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.02
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.89
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.75
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.74
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	95.69
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.67
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.67
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.62
2pm7_B	297	Protein transport protein SEC13, protein transport	95.58
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.54
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.5
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.43
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.43
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.37
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	95.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.2
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.2
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.13
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.11
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.82
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.81
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.76
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.63
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	94.14
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	93.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.93
2pm7_B	297	Protein transport protein SEC13, protein transport	93.74
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	93.36
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	93.31
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	93.16
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	92.65
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	92.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	92.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	92.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	91.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.76
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.75
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.43
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	91.17
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	91.1
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	90.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	90.39
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	90.27
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.18
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.99
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	89.79
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.66
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	88.63
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	88.54
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	88.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	88.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	88.03
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	87.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	87.67
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.41
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	86.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	86.47
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	86.4
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	85.9
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.65
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	85.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	85.14
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	84.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	83.95
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	83.86
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	83.72
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	81.9
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	80.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	80.29

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=100.00  E-value=3.5e-64  Score=570.80  Aligned_cols=331  Identities=20%  Similarity=0.292  Sum_probs=292.8

Q ss_pred             CCcCCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC-----------------------------------------
Q 014962            1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN-----------------------------------------   39 (415)
Q Consensus         1 ~~~~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~-----------------------------------------   39 (415)
                      |+++++||+++|||++|||||+|||++++|+|++++.+.                                         
T Consensus       722 i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  801 (1158)
T 3ei3_A          722 IDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG  801 (1158)
T ss_dssp             ECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred             ecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence            356799999999999999999999999999999876420                                         


Q ss_pred             -CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC--eeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecc
Q 014962           40 -DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH--EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQ  116 (415)
Q Consensus        40 -~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~--~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~  116 (415)
                       ..|+|+|+|+||.+|+++++|+|++||.++|++.|.|.+  ++||||||++..      ++|+++++|||++|++..  
T Consensus       802 ~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~------~~e~~~~~Gri~vf~v~~--  873 (1158)
T 3ei3_A          802 EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVY------PEEAEPKQGRIVVFQYSD--  873 (1158)
T ss_dssp             CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECC------TTCSSCCCEEEEEEEEET--
T ss_pred             CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecC------CCCCCCCceEEEEEEEEC--
Confidence             137899999999999999999999999999999999985  589999999875      688999999999999992  


Q ss_pred             cCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeC
Q 014962          117 NSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL  196 (415)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~  196 (415)
                                                                                .||+++|+++++|+|+|||+|+
T Consensus       874 ----------------------------------------------------------~kL~lv~~~~v~g~v~al~~~~  895 (1158)
T 3ei3_A          874 ----------------------------------------------------------GKLQTVAEKEVKGAVYSMVEFN  895 (1158)
T ss_dssp             ----------------------------------------------------------TEEEEEEEEEESSCEEEEEEET
T ss_pred             ----------------------------------------------------------CEEEEEEEEEcCCcCEEEeeeC
Confidence                                                                      3899999999999999999999


Q ss_pred             CceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCccee
Q 014962          197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLV  276 (415)
Q Consensus       197 g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~v  276 (415)
                      |+ ||+|+|++|++|+|+++  ++|+..+.....+.+++|++.||+|+|||+|+|++|++|++++++|+++|||+.++|+
T Consensus       896 g~-Lla~ig~~l~vy~l~~~--~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~v  972 (1158)
T 3ei3_A          896 GK-LLASINSTVRLYEWTTE--KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM  972 (1158)
T ss_dssp             TE-EEEEETTEEEEEEECTT--SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCE
T ss_pred             CE-EEEEcCCEEEEEECCCC--ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccE
Confidence            98 99999999999999973  4677433222233477999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCC
Q 014962          277 ADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQ  356 (415)
Q Consensus       277 ta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~  356 (415)
                      +|++|||+++++++|++|||++++++++..++. +.++|+..++||+||.||+|+++++.+..+.+..        ...+
T Consensus       973 ta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~-~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~--------~~~~ 1043 (1158)
T 3ei3_A          973 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDE-ERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETS--------TPTQ 1043 (1158)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEEECTTCCSTT-GGGBEEEEEEEECSSCEEEEEECCSCCC---------------CEE
T ss_pred             EEEEEEccCcEEEEcCCCcEEEEecCCCCCCcc-ccceeeeEEEEeCCCcEeeEEeeeeecCCCcccc--------cccc
Confidence            999999999999999999999999998655433 3479999999999999999999999743321111        1346


Q ss_pred             ceEEEEeCCcceEEEEecChHHHHHHHHHHHHHhcCCCCCCCCCCCcccccceec
Q 014962          357 TTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSREN  411 (415)
Q Consensus       357 ~~ily~T~~GsIG~l~pl~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~~  411 (415)
                      ++++|||++|+||+|+||++++|+||..||++|++  .++++||+||++||+|++
T Consensus      1044 ~~il~~T~~GsIg~l~pl~~~~~~~L~~Lq~~l~~--~~~~~~gl~~~~~Rs~~~ 1096 (1158)
T 3ei3_A         1044 GSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNK--VIKSVGKIEHSFWRSFHT 1096 (1158)
T ss_dssp             EEEEEEETTSCEEEEEEECHHHHHHHHHHHHHHHH--HSCCTTSCCHHHHHSEEC
T ss_pred             ceEEEEecCCEEEEEEEcCHHHHHHHHHHHHHHHh--hCCCCcCCCHHHhhCeec
Confidence            78999999999999999999999999999999999  889999999999999999

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.0074  Score=56.80  Aligned_cols=194  Identities=15%  Similarity=0.145  Sum_probs=120.5

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++++..+       ..|++.|..+++.+..+.-. ...+.++   .+. +..+|+.|..        
T Consensus        34 ~v~~~~~s~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~h-~~~v~~~---~~~~~~~~l~s~~~--------   94 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKD-------SSASVWYSLNGERLGTLDGH-TGTIWSI---DVDCFTKYCVTGSA--------   94 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESS-------SCEEEEETTTCCEEEEECCC-SSCEEEE---EECTTSSEEEEEET--------
T ss_pred             eEEEEEEcCCCCEEEEEeCC-------CEEEEEeCCCchhhhhhhhc-CCcEEEE---EEcCCCCEEEEEeC--------
Confidence            67788999998887776533       35999999999888766533 3344444   343 4578887744        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|++..                                                   |        .
T Consensus        95 --------dg~i~iwd~~~---------------------------------------------------~--------~  107 (369)
T 3zwl_B           95 --------DYSIKLWDVSN---------------------------------------------------G--------Q  107 (369)
T ss_dssp             --------TTEEEEEETTT---------------------------------------------------C--------C
T ss_pred             --------CCeEEEEECCC---------------------------------------------------C--------c
Confidence                    47889988772                                                   0        0


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEEeC------CeEEEEeeCCCCc-cc--------eeeeeeecc--ceEEEEEE
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLASAG------NAFYVCGFPNDNP-QR--------VRRFAVGRT--RFMIMLLT  237 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~vg------~~l~v~~~~~~~~-~~--------L~~~a~~~~--~~~i~sI~  237 (415)
                      .+.   .....++|.+++-. .|++|+++..      ..|.+|++..... ..        +........  ......+.
T Consensus       108 ~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          108 CVA---TWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             EEE---EEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             EEE---EeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence            122   22367788888744 4564666555      5799999975321 01        111111111  33344445


Q ss_pred             EeCCEEEEeecCCcEEEEEEEccC-CeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecC
Q 014962          238 AHFTRIAVGDCRDGILFYSYHEDA-RKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       238 ~~~n~IlVGD~~~Sv~ll~y~~~~-~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~  302 (415)
                      ..++++++|+.-..+.++.  ... ......-. .....++++.+-. ...++.+..+|.|.++...
T Consensus       185 ~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          185 TKGKYIIAGHKDGKISKYD--VSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             GGGCEEEEEETTSEEEEEE--TTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCEEEEEcCCCEEEEEE--CCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            5678999998888776654  443 33322222 2455678888764 4478888999999999854

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.011  Score=55.81  Aligned_cols=197  Identities=8%  Similarity=0.065  Sum_probs=120.9

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCC--CCcEEEEEeCCCC-CeEEEEEEEEEC-C--eeEEEEeeecCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL--SGSVLSSFKLELG-ETGKSMELVRVG-H--EQVLVVGTSLSS   90 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~--t~~~i~s~~l~~~-E~~~si~~~~l~-~--~~~lvVGT~~~~   90 (415)
                      ..+.++++|+.+.++++..+       ..|++.|..  +++.+..  +..+ ..+.++   .+. +  ..+|+.|..   
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~--~~~h~~~v~~~---~~~~~~~~~~l~s~~~---   77 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSD-------KTIKIFEVEGETHKLIDT--LTGHEGPVWRV---DWAHPKFGTILASCSY---   77 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETT-------SCEEEEEEETTEEEEEEE--ECCCSSCEEEE---EECCGGGCSEEEEEET---
T ss_pred             cEEEEEEcCCCCEEEEEECC-------CcEEEEecCCCcceeeeE--ecCCCCcEEEE---EeCCCCCCCEEEEecc---
Confidence            56788999998888776533       347887765  3444443  3332 334443   342 2  578887754   


Q ss_pred             CCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccc
Q 014962           91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE  170 (415)
Q Consensus        91 ~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~  170 (415)
                                   .|.|.+|++..                                                        
T Consensus        78 -------------dg~v~iwd~~~--------------------------------------------------------   88 (379)
T 3jrp_A           78 -------------DGKVLIWKEEN--------------------------------------------------------   88 (379)
T ss_dssp             -------------TSCEEEEEEET--------------------------------------------------------
T ss_pred             -------------CCEEEEEEcCC--------------------------------------------------------
Confidence                         47899999882                                                        


Q ss_pred             ccccceEEEEE-EEecCCceEEEeeeC---CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-------
Q 014962          171 ETETWQLRLAY-STTWPGMVLAICPYL---DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-------  238 (415)
Q Consensus       171 ~~~~~~L~l~~-~~~~~g~V~al~~~~---g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-------  238 (415)
                          .+...+. .....++|.+++-..   |.+|+++ ....|.+|++.....  ............+.++..       
T Consensus        89 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           89 ----GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             ----TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEEEECCCC---
T ss_pred             ----CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEEEEcCccccc
Confidence                0222222 233567888888543   5535544 455699999986321  111122222223444443       


Q ss_pred             --------eCCEEEEeecCCcEEEEEEEccCCeEEEEe-cCCCcceeEEEEeeeC----CeEEEeCCCCcEEEEecCC
Q 014962          239 --------HFTRIAVGDCRDGILFYSYHEDARKLEQIY-CDPSQRLVADCVLMDV----DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       239 --------~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va-rD~~~~~vta~~~Ld~----d~~l~aD~~gNl~vl~~~~  303 (415)
                              .++++++|..-..+.++..+........+. -......++++.+-.+    ..++.+..+|.|.++....
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                    368899999999998888776554433332 2234567888888644    4788889999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.97  E-value=0.0062  Score=56.69  Aligned_cols=233  Identities=9%  Similarity=0.008  Sum_probs=137.8

Q ss_pred             CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCC-CeEEEEEEEEECCeeEEEEeeecCCCCC
Q 014962           15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGPA   93 (415)
Q Consensus        15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~-E~~~si~~~~l~~~~~lvVGT~~~~~~~   93 (415)
                      ....+.++++|+.+.++++..+       ..|++.|..+.+......+... ..+.++..  ..+..++++|+.      
T Consensus        97 ~~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~------  161 (337)
T 1gxr_A           97 DNYIRSCKLLPDGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAI--SPDSKVCFSCCS------  161 (337)
T ss_dssp             TSBEEEEEECTTSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEE--CTTSSEEEEEET------
T ss_pred             CCcEEEEEEcCCCCEEEEEcCC-------CcEEEEECCCCCcceeeecccCCCceEEEEE--CCCCCEEEEEeC------
Confidence            3467788999988877776532       4699999888773333333332 33444332  124578887754      


Q ss_pred             CCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccc
Q 014962           94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE  173 (415)
Q Consensus        94 ~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  173 (415)
                                .|.|.+|++..                                                           
T Consensus       162 ----------dg~v~~~d~~~-----------------------------------------------------------  172 (337)
T 1gxr_A          162 ----------DGNIAVWDLHN-----------------------------------------------------------  172 (337)
T ss_dssp             ----------TSCEEEEETTT-----------------------------------------------------------
T ss_pred             ----------CCcEEEEeCCC-----------------------------------------------------------
Confidence                      46788887762                                                           


Q ss_pred             cceEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCc
Q 014962          174 TWQLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG  251 (415)
Q Consensus       174 ~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~S  251 (415)
                      +..+..+  ....++|.+++-- +|.+|+++ ..+.|++|++...  +.+... ....+.....+...++++++|..-..
T Consensus       173 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          173 QTLVRQF--QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG--RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             TEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             Cceeeee--ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC--ceEeee-cCCCceEEEEECCCCCEEEEEcCCCc
Confidence            0011111  2246778887744 45545544 3557999999762  333332 22333344444456789999998888


Q ss_pred             EEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEE
Q 014962          252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI  330 (415)
Q Consensus       252 v~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~  330 (415)
                      +.++.  ........+  ......++++.+-. ...++.+..+|.|.+++....        ..+   ..+..+..|+++
T Consensus       248 i~~~~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~--------~~~---~~~~~~~~v~~~  312 (337)
T 1gxr_A          248 VEVLH--VNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--------ASI---FQSKESSSVLSC  312 (337)
T ss_dssp             EEEEE--TTSSCEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEE---EEEECSSCEEEE
T ss_pred             EEEEE--CCCCCeEEE--cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC--------eEE---EEecCCCcEEEE
Confidence            86654  444444433  23456788888864 447888888999999986531        122   222334556655


Q ss_pred             EeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEE
Q 014962          331 RKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIF  371 (415)
Q Consensus       331 ~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l  371 (415)
                      .   +.                 .....++.++.+|.|-+.
T Consensus       313 ~---~s-----------------~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          313 D---IS-----------------VDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             E---EC-----------------TTSCEEEEEETTSCEEEE
T ss_pred             E---EC-----------------CCCCEEEEecCCCeEEEE
Confidence            3   21                 123568888999988754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.96  E-value=0.0041  Score=58.55  Aligned_cols=193  Identities=8%  Similarity=0.057  Sum_probs=120.6

Q ss_pred             CccCEEEEecCC---CEEEEEEEeeCCCcceeeEEEEeCCC-CcEE-EEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecC
Q 014962           16 GTPKKVLYHSES---RLLIVMRTELNNDTCSSDICCVDPLS-GSVL-SSFKLELGETGKSMELVRVG-HEQVLVVGTSLS   89 (415)
Q Consensus        16 ~tp~~I~y~~~~---~~~~v~~~~~~~~~~~s~i~l~d~~t-~~~i-~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~   89 (415)
                      .....|+++|+.   +.++.+..+       ..|++.|..+ ...+ ..+. .....+.++   .+. +..+|+.|+.  
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~---~~~~~~~~l~s~~~--  106 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWA-------NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDV---CWSDDGSKVFTASC--  106 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETT-------SEEEEEEECTTSCEEEEEEE-ECSSCEEEE---EECTTSSEEEEEET--
T ss_pred             CceEEEEEcCCCCCceEEEEECCC-------CcEEEEEcCCCCceeEEEec-cccCCEEEE---EECcCCCEEEEEcC--
Confidence            366889999985   555554322       3589999876 4444 3322 223344444   343 5578887754  


Q ss_pred             CCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccc
Q 014962           90 SGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL  169 (415)
Q Consensus        90 ~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~  169 (415)
                                    .|.|.+|++..                                                       
T Consensus       107 --------------dg~v~iwd~~~-------------------------------------------------------  117 (368)
T 3mmy_A          107 --------------DKTAKMWDLSS-------------------------------------------------------  117 (368)
T ss_dssp             --------------TSEEEEEETTT-------------------------------------------------------
T ss_pred             --------------CCcEEEEEcCC-------------------------------------------------------
Confidence                          47888888762                                                       


Q ss_pred             cccccceEEEEEEEecCCceEEEee---eCCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE
Q 014962          170 EETETWQLRLAYSTTWPGMVLAICP---YLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV  245 (415)
Q Consensus       170 ~~~~~~~L~l~~~~~~~g~V~al~~---~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV  245 (415)
                           .++.  ......++|.+++-   -.|.+|+++. .+.|++|++...  +.+....   .+..+..+....+.+++
T Consensus       118 -----~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          118 -----NQAI--QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS--NPMMVLQ---LPERCYCADVIYPMAVV  185 (368)
T ss_dssp             -----TEEE--EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS--SCSEEEE---CSSCEEEEEEETTEEEE
T ss_pred             -----CCce--eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC--cEEEEEe---cCCCceEEEecCCeeEE
Confidence                 0111  12446788999984   3566344443 467999999863  3343322   23357777888999999


Q ss_pred             eecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-C----eEEEeCCCCcEEEEecCC
Q 014962          246 GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-D----TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       246 GD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d----~~l~aD~~gNl~vl~~~~  303 (415)
                      +..-..+.++..+.....+..+. ........++.+... .    .++.+..+|.+.++....
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  247 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP  247 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred             EeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence            99999998887765544444433 334444555554422 2    389999999999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.95  E-value=0.0036  Score=58.27  Aligned_cols=189  Identities=6%  Similarity=0.023  Sum_probs=117.5

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++++..+       ..|++.|..+++.+..+.-. ...+.++   .+. +..++++|+.        
T Consensus       143 ~i~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~~~~~-~~~i~~~---~~~~~~~~l~~~~~--------  203 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQGH-TDGASCI---DISNDGTKLWTGGL--------  203 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCC-SSCEEEE---EECTTSSEEEEEET--------
T ss_pred             ceEEEEECCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeecc-cCceEEE---EECCCCCEEEEEec--------
Confidence            45678888887777766532       35999999998887766532 3344433   343 4578887754        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|++..                                                            .
T Consensus       204 --------dg~i~~~d~~~------------------------------------------------------------~  215 (337)
T 1gxr_A          204 --------DNTVRSWDLRE------------------------------------------------------------G  215 (337)
T ss_dssp             --------TSEEEEEETTT------------------------------------------------------------T
T ss_pred             --------CCcEEEEECCC------------------------------------------------------------C
Confidence                    46888888762                                                            0


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEE
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~  253 (415)
                      +  .+......+++.+++-- .|++|+++. .+.|++|++...  + +.....+..+.........++++++|..-..+.
T Consensus       216 ~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          216 R--QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--D-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             E--EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--C-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             c--eEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--C-eEEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence            1  12223567888888743 456455554 466999999863  2 222222233333333344578899998877776


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEec
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~  301 (415)
                      ++  +...++.....  .....++++.+-.+ ..++.+..+|.|.++++
T Consensus       291 ~~--~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          291 AW--RTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE--ETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EE--ECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            55  44444443222  24556888887644 47788899999998874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.90  E-value=0.02  Score=55.88  Aligned_cols=239  Identities=9%  Similarity=0.024  Sum_probs=137.7

Q ss_pred             CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCC
Q 014962           15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~   94 (415)
                      ......++++|+.+.++++..+       +.|++.|..+++.+..+. .....+.++..    +..+++.|..       
T Consensus       134 ~~~v~~v~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~----~~~~l~~~~~-------  194 (401)
T 4aez_A          134 STYVASVKWSHDGSFLSVGLGN-------GLVDIYDVESQTKLRTMA-GHQARVGCLSW----NRHVLSSGSR-------  194 (401)
T ss_dssp             TCCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEEC-CCSSCEEEEEE----ETTEEEEEET-------
T ss_pred             CCCEEEEEECCCCCEEEEECCC-------CeEEEEECcCCeEEEEec-CCCCceEEEEE----CCCEEEEEcC-------
Confidence            3467789999988887776533       359999999998887766 33445555543    4467777754       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               .|.|.+|++..                                             .             +
T Consensus       195 ---------dg~i~i~d~~~---------------------------------------------~-------------~  207 (401)
T 4aez_A          195 ---------SGAIHHHDVRI---------------------------------------------A-------------N  207 (401)
T ss_dssp             ---------TSEEEEEETTS---------------------------------------------S-------------S
T ss_pred             ---------CCCEEEEeccc---------------------------------------------C-------------c
Confidence                     47888888872                                             0             0


Q ss_pred             ceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eC-CEEEEee--
Q 014962          175 WQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HF-TRIAVGD--  247 (415)
Q Consensus       175 ~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~-n~IlVGD--  247 (415)
                      ..+..+  ....++|.+++-. .|.+|+++. .+.|.+|++...  +.+.....+..  .+.++..  .+ ++++.|.  
T Consensus       208 ~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~--~v~~~~~~p~~~~ll~~~~gs  281 (401)
T 4aez_A          208 HQIGTL--QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNA--AVKAVAWCPWQSNLLATGGGT  281 (401)
T ss_dssp             CEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS--SEEEEECCCSS--CCCEEEECTTSTTEEEEECCT
T ss_pred             ceeeEE--cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC--CccEEecCCcc--eEEEEEECCCCCCEEEEecCC
Confidence            122222  3457888888744 456455544 367999999862  22333222232  3444444  33 4555554  


Q ss_pred             cCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEE--eCCCCcEEEEecCCCcCCCCCCCCccceeeeee-c
Q 014962          248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVV--SDRKGSIAVLSCSDRLEDNASPECNLTPNCAYH-M  323 (415)
Q Consensus       248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~--aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fh-l  323 (415)
                      .-..+.+  |+...++....-.  ....++++.+-.++ .+++  +..+|.|.++.+...         .+.....+. .
T Consensus       282 ~d~~i~i--~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~---------~~~~~~~~~~h  348 (401)
T 4aez_A          282 MDKQIHF--WNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS---------GLTKQVDIPAH  348 (401)
T ss_dssp             TTCEEEE--EETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT---------EEEEEEEEECC
T ss_pred             CCCEEEE--EECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc---------cceeEEEecCC
Confidence            4445544  5554444333222  34568888876444 5665  457999999986541         222222221 1


Q ss_pred             CccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEecChHH
Q 014962          324 GEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEE  378 (415)
Q Consensus       324 Gd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl~~~~  378 (415)
                      ...|+++.   +.                 .....++.++.+|.|-+.-.-+.+.
T Consensus       349 ~~~v~~~~---~s-----------------~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          349 DTRVLYSA---LS-----------------PDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             SSCCCEEE---EC-----------------TTSSEEEEECTTSEEEEEECCC---
T ss_pred             CCCEEEEE---EC-----------------CCCCEEEEEeCCCcEEEEECCCCcc
Confidence            23455542   21                 1235688889999988775554443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.87  E-value=0.0024  Score=60.04  Aligned_cols=207  Identities=10%  Similarity=0.016  Sum_probs=122.1

Q ss_pred             eCCCccCEEEEecCCC-EEEEEEEeeCCCcceeeEEEEeC-CCCcEEEEEeCC---CCCeEEEEEEEEECCeeEEEEeee
Q 014962           13 HLGGTPKKVLYHSESR-LLIVMRTELNNDTCSSDICCVDP-LSGSVLSSFKLE---LGETGKSMELVRVGHEQVLVVGTS   87 (415)
Q Consensus        13 ~L~~tp~~I~y~~~~~-~~~v~~~~~~~~~~~s~i~l~d~-~t~~~i~s~~l~---~~E~~~si~~~~l~~~~~lvVGT~   87 (415)
                      ........++++|+.+ .++++..+       ..|++.|. .+.+.   ..+.   ....+.++....   ..+++.|+.
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~---~~~l~s~~~  120 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQ-------GEILKVDLIGSPSF---QALTNNEANLGICRICKYG---DDKLIAASW  120 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETT-------SCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET---TTEEEEEET
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCC-------CeEEEEEeccCCce---EeccccCCCCceEEEEeCC---CCEEEEEcC
Confidence            4445778899999888 66665532       35999998 77765   2333   345566665433   567776644


Q ss_pred             cCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCc
Q 014962           88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI  167 (415)
Q Consensus        88 ~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~  167 (415)
                                      .|.|.+|++.....                                          +     ..
T Consensus       121 ----------------d~~i~iwd~~~~~~------------------------------------------~-----~~  137 (342)
T 1yfq_A          121 ----------------DGLIEVIDPRNYGD------------------------------------------G-----VI  137 (342)
T ss_dssp             ----------------TSEEEEECHHHHTT------------------------------------------B-----CE
T ss_pred             ----------------CCeEEEEccccccc------------------------------------------c-----cc
Confidence                            46888888772000                                          0     00


Q ss_pred             cccccccceEEEEEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCC-CCccceeeeeeeccceEEEEEEE-eCCEEE
Q 014962          168 KLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPN-DNPQRVRRFAVGRTRFMIMLLTA-HFTRIA  244 (415)
Q Consensus       168 ~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~-~~~~~L~~~a~~~~~~~i~sI~~-~~n~Il  244 (415)
                            ....+.+......+.|++++-..+. |+++ ....|.+|++.. ..............+.....+.. .+++++
T Consensus       138 ------~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  210 (342)
T 1yfq_A          138 ------AVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             ------EEEESCSSSSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             ------cccCCeeeEEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEE
Confidence                  0000001112256778888866666 5555 455899999975 32111112122222333333444 578999


Q ss_pred             EeecCCcEEEEEEEcc-----CCeEEEEecCCC-------cceeEEEEeee-CCeEEEeCCCCcEEEEecC
Q 014962          245 VGDCRDGILFYSYHED-----ARKLEQIYCDPS-------QRLVADCVLMD-VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       245 VGD~~~Sv~ll~y~~~-----~~~L~~varD~~-------~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~  302 (415)
                      +|..-..+.++.|+..     ......+.....       ...++++.+-. ...++.+..+|.|.++...
T Consensus       211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            9999889988888775     132333322211       33788888764 4578888999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.004  Score=59.93  Aligned_cols=193  Identities=13%  Similarity=0.112  Sum_probs=114.8

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe--------------EEEEEEEEECCeeEE
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET--------------GKSMELVRVGHEQVL   82 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~--------------~~si~~~~l~~~~~l   82 (415)
                      ....++++|+.+.++.+..+       ..|++.|..+++.+..+.......              +.++.   +..+..+
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  220 (425)
T 1r5m_A          151 PIVSVKWNKDGTHIISMDVE-------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE---WVDDDKF  220 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------CCEEEEETTTTEEEEEECCC---------------CCCBSCCE---EEETTEE
T ss_pred             cEEEEEECCCCCEEEEEecC-------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE---EcCCCEE
Confidence            56678888887776655432       359999999998888777655431              22222   2223456


Q ss_pred             EEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCC
Q 014962           83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDA  162 (415)
Q Consensus        83 vVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  162 (415)
                      ++|+.                .|.|++|++...                                               
T Consensus       221 ~~~~~----------------~g~i~~~d~~~~-----------------------------------------------  237 (425)
T 1r5m_A          221 VIPGP----------------KGAIFVYQITEK-----------------------------------------------  237 (425)
T ss_dssp             EEECG----------------GGCEEEEETTCS-----------------------------------------------
T ss_pred             EEEcC----------------CCeEEEEEcCCC-----------------------------------------------
Confidence            66644                578888887720                                               


Q ss_pred             CCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeC
Q 014962          163 SCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF  240 (415)
Q Consensus       163 ~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~  240 (415)
                          .        .+..+  ....++|.+++-- .|++|+++. ...|.+|++...  +.+.....+..  .+.++....
T Consensus       238 ----~--------~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~--~i~~~~~~~  299 (425)
T 1r5m_A          238 ----T--------PTGKL--IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG--NSQNCFYGHSQ--SIVSASWVG  299 (425)
T ss_dssp             ----S--------CSEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB--SCSEEECCCSS--CEEEEEEET
T ss_pred             ----c--------eeeee--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--ccceEecCCCc--cEEEEEECC
Confidence                0        11111  2346778887744 455455554 466999999762  22333222222  455555433


Q ss_pred             C-EEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          241 T-RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       241 n-~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      + ++++|..-..+.++  +...++....-. .....++++.+-. ...++++..+|.|.++....
T Consensus       300 ~~~l~~~~~d~~i~i~--d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          300 DDKVISCSMDGSVRLW--SLKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             TTEEEEEETTSEEEEE--ETTTTEEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             CCEEEEEeCCCcEEEE--ECCCCcEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            2 88888877777554  544454443333 2345777887764 44788888999999998654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.86  E-value=0.012  Score=60.06  Aligned_cols=238  Identities=10%  Similarity=0.003  Sum_probs=124.1

Q ss_pred             CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCC----cEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCC
Q 014962           15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG----SVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSS   90 (415)
Q Consensus        15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~----~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~   90 (415)
                      ...+..++++|+.+.++++.        ...|++.|..++    +.+..+.-.....+.++..-...+..+|++|..   
T Consensus        18 ~~~v~~~~~spdg~~l~~~~--------~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~---   86 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC--------GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE---   86 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE--------TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET---
T ss_pred             cCceeEEEECCCCCEEEEec--------CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC---
Confidence            45778899999999888876        136999999888    666655433332266655431115578888754   


Q ss_pred             CCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeec-ccccccccCcCCCCCCCCCCCCccc
Q 014962           91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVG-YATEQLSSSSLCSSPDDASCDGIKL  169 (415)
Q Consensus        91 ~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~g~~~  169 (415)
                                   .|.|.+|++.......             .+.    .+.+. .......-..+.-.|+     |..+
T Consensus        87 -------------dg~v~vw~~~~~~~~~-------------~~~----~~~~~~~~~~~~~v~~~~~s~~-----~~~l  131 (615)
T 1pgu_A           87 -------------SGKVIVWGWTFDKESN-------------SVE----VNVKSEFQVLAGPISDISWDFE-----GRRL  131 (615)
T ss_dssp             -------------TSEEEEEEEEEEGGGT-------------EEE----EEEEEEEECCSSCEEEEEECTT-----SSEE
T ss_pred             -------------CCEEEEEeCCCCcccc-------------ccc----ccccchhhcccccEEEEEEeCC-----CCEE
Confidence                         4788888886200000             000    00000 0000000000011122     1100


Q ss_pred             cccc-c----ceEE------EEE-EEecCCceEEEeeeC-Cc-eEEEE-eCCeEEEEeeCCCCccceeeeeeecc---ce
Q 014962          170 EETE-T----WQLR------LAY-STTWPGMVLAICPYL-DR-YFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRT---RF  231 (415)
Q Consensus       170 ~~~~-~----~~L~------l~~-~~~~~g~V~al~~~~-g~-yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~---~~  231 (415)
                      -... .    -.+.      .+. -....+.|.+++-.. |. .|+.+ ..+.|.+|++..  .+.+.....+..   ..
T Consensus       132 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v  209 (615)
T 1pgu_A          132 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--FKFSASDRTHHKQGSFV  209 (615)
T ss_dssp             EEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--BEEEEEECSSSCTTCCE
T ss_pred             EEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--cceeeeecccCCCCceE
Confidence            0000 0    0000      000 011245677766333 32 24433 345688888765  233333222332   33


Q ss_pred             EEEEEEEe-CCEEEEeecCCcEEEEEEEccCCeEEEEecC---CCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          232 MIMLLTAH-FTRIAVGDCRDGILFYSYHEDARKLEQIYCD---PSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       232 ~i~sI~~~-~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD---~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      ........ ++++++|..-..+.++  +...++....-..   .....+.++.+.+...++.+..+|.|.+++..
T Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          210 RDVEFSPDSGEFVITVGSDRKISCF--DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEE--ETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEE--ECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECC
Confidence            33444445 7799999988888665  4444444444322   56667888888745578888999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.82  E-value=0.0075  Score=59.73  Aligned_cols=111  Identities=7%  Similarity=0.109  Sum_probs=75.0

Q ss_pred             cCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962          185 WPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       185 ~~g~V~al~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      ..++|++++. .|.+|+++. .+.|.+|++...  +.+....  .....+..+...++++++|..-..+.++..  ..++
T Consensus       278 ~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~--~~~~  350 (445)
T 2ovr_B          278 HTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETG--NCIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDI--KTGQ  350 (445)
T ss_dssp             CSSCEEEEEE-CSSEEEEEETTSCEEEEETTTC--CEEEEEC--CCCSCEEEEEEETTEEEEEETTSCEEEEET--TTCC
T ss_pred             CCCceEEEEE-CCCEEEEEeCCCeEEEEECCCC--CEEEEEc--CCcccEEEEEEeCCEEEEEeCCCeEEEEEC--CCCc
Confidence            4678888876 776566554 566999999762  3333322  223356677778999999998888877654  3333


Q ss_pred             -EEEEec-CCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          264 -LEQIYC-DPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       264 -L~~var-D~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                       +..+.. ......++++.+ +.+.++++..+|.|.+++...
T Consensus       351 ~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~iwd~~~  391 (445)
T 2ovr_B          351 CLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKT  391 (445)
T ss_dssp             EEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEEEECCC
Confidence             333322 235567777777 677899999999999998653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.82  E-value=0.0011  Score=64.57  Aligned_cols=192  Identities=9%  Similarity=0.064  Sum_probs=114.0

Q ss_pred             cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 014962           18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS   97 (415)
Q Consensus        18 p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~   97 (415)
                      ...++|+|+.+.++.+..+       ..|++.|..+.+....  +... .+.++..+. .+..+|++|..          
T Consensus        59 ~~~~~~s~~g~~l~~~~~d-------~~v~i~d~~~~~~~~~--~~~~-~~~~~~~~~-~~~~~l~~~~~----------  117 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLD-------GHDFLFNTIIRDGSKM--LKRA-DYTAVDTAK-LQMRRFILGTT----------  117 (420)
T ss_dssp             CTTCEEEEEETTEEEEEET-------TEEEEEECCSEETTTT--SCSC-CEEEEEEEC-SSSCEEEEEET----------
T ss_pred             ccceeeeecCCeEEEEEcC-------CcEEEEEecccceeeE--EecC-CceEEEEEe-cCCCEEEEEEC----------
Confidence            4578899998888777653       3589999877654322  2222 344433322 34578888854          


Q ss_pred             CCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceE
Q 014962           98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL  177 (415)
Q Consensus        98 ~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L  177 (415)
                            .|.|.+|++..                                                            .++
T Consensus       118 ------dg~i~iwd~~~------------------------------------------------------------~~~  131 (420)
T 3vl1_A          118 ------EGDIKVLDSNF------------------------------------------------------------NLQ  131 (420)
T ss_dssp             ------TSCEEEECTTS------------------------------------------------------------CEE
T ss_pred             ------CCCEEEEeCCC------------------------------------------------------------cce
Confidence                  46777776551                                                            011


Q ss_pred             EEEEE-EecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEE
Q 014962          178 RLAYS-TTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILF  254 (415)
Q Consensus       178 ~l~~~-~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~l  254 (415)
                        +.. ....++|++++-. .|++|+.+. ...|++|++...  +.++....+............+++++.|..-..+.+
T Consensus       132 --~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          132 --REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             --EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             --eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence              111 2456889988854 456455443 356999999762  334443334444444444556788999988888866


Q ss_pred             EEEEccCCeEEEEec--CCCcceeEEEEee----------------------eCCeEEEeCCCCcEEEEecC
Q 014962          255 YSYHEDARKLEQIYC--DPSQRLVADCVLM----------------------DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       255 l~y~~~~~~L~~var--D~~~~~vta~~~L----------------------d~d~~l~aD~~gNl~vl~~~  302 (415)
                      +.  ...++....-+  ......+.++.+.                      +...++++..+|.|.++...
T Consensus       208 wd--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  277 (420)
T 3vl1_A          208 WE--CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF  277 (420)
T ss_dssp             EE--TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred             eE--CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence            54  44443333222  2234455555553                      22367888999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.81  E-value=0.0028  Score=59.75  Aligned_cols=201  Identities=9%  Similarity=0.063  Sum_probs=122.5

Q ss_pred             CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCC
Q 014962           15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~   94 (415)
                      ......++++|+.+.++.+..+       ..|++.|..+.+.+....  ....+.++....-.+..+|+.|..       
T Consensus        86 ~~~v~~~~~~~~~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~-------  149 (368)
T 3mmy_A           86 TGPVLDVCWSDDGSKVFTASCD-------KTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSW-------  149 (368)
T ss_dssp             SSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEE--CSSCEEEEEEEECSSCEEEEEEET-------
T ss_pred             cCCEEEEEECcCCCEEEEEcCC-------CcEEEEEcCCCCceeecc--ccCceEEEEEEeCCCCCEEEEccC-------
Confidence            3467788888888877766432       369999999888776443  345566665443445677887754       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               .|.|.+|++..                                                   ++       
T Consensus       150 ---------dg~i~vwd~~~---------------------------------------------------~~-------  162 (368)
T 3mmy_A          150 ---------DKTLKFWDTRS---------------------------------------------------SN-------  162 (368)
T ss_dssp             ---------TSEEEEECSSC---------------------------------------------------SS-------
T ss_pred             ---------CCcEEEEECCC---------------------------------------------------Cc-------
Confidence                     46788888772                                                   00       


Q ss_pred             ceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeee-eeeccceEEEEEEEeCCE----EEEeecC
Q 014962          175 WQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTAHFTR----IAVGDCR  249 (415)
Q Consensus       175 ~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~-a~~~~~~~i~sI~~~~n~----IlVGD~~  249 (415)
                       .   +........+.++.......++++....+.+|++..... .+... ........+..+......    +++|..-
T Consensus       163 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          163 -P---MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             -C---SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE-EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             -E---EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc-hhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence             0   112334567788887777634556667799999986321 12111 112233345555544433    8888888


Q ss_pred             CcEEEEEEEccCC---eEEEEecCCC---------cceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          250 DGILFYSYHEDAR---KLEQIYCDPS---------QRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       250 ~Sv~ll~y~~~~~---~L~~varD~~---------~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ..+.++.++....   ....-+.+..         ...++++.+-. ...++.+..+|.|.+++...
T Consensus       238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence            8887777654421   1122111111         01577887753 34888999999999998653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.012  Score=57.72  Aligned_cols=204  Identities=12%  Similarity=0.104  Sum_probs=122.1

Q ss_pred             eCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCC---CC--------cEEEEEeCC---CCCeEEEEEEEEECC
Q 014962           13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL---SG--------SVLSSFKLE---LGETGKSMELVRVGH   78 (415)
Q Consensus        13 ~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~---t~--------~~i~s~~l~---~~E~~~si~~~~l~~   78 (415)
                      .-......++++|+.+.++.+..+.       .|++.|..   ++        ..+..+.+.   ..+.+.++....-.+
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDG-------QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTS-------EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCC-------EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence            4455778899999888777765332       35665542   22        244566666   456677666554456


Q ss_pred             eeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCC
Q 014962           79 EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSS  158 (415)
Q Consensus        79 ~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  158 (415)
                      ..+++.|+.                .|.|.+|++..                                            
T Consensus       182 ~~~l~~~~~----------------d~~i~iwd~~~--------------------------------------------  201 (437)
T 3gre_A          182 KSLLVALTN----------------LSRVIIFDIRT--------------------------------------------  201 (437)
T ss_dssp             CEEEEEEET----------------TSEEEEEETTT--------------------------------------------
T ss_pred             CCEEEEEeC----------------CCeEEEEeCCC--------------------------------------------
Confidence            688888865                47888888772                                            


Q ss_pred             CCCCCCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEE
Q 014962          159 PDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL  236 (415)
Q Consensus       159 ~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI  236 (415)
                                     +..+..+......++|++++-- .|++|+++. ...|.+|++..  .+.+..... .....|.++
T Consensus       202 ---------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~-~~~~~v~~~  263 (437)
T 3gre_A          202 ---------------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF--NVLIRSWSF-GDHAPITHV  263 (437)
T ss_dssp             ---------------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT--TEEEEEEBC-TTCEEEEEE
T ss_pred             ---------------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC--ccEEEEEec-CCCCceEEE
Confidence                           0122222111246789998843 456455544 44599999986  233333221 223456666


Q ss_pred             EEe------CCEEEEeecCCcEEEEEEEccCCeEEEEec-------------------------CCCcceeEEEEeeeCC
Q 014962          237 TAH------FTRIAVGDCRDGILFYSYHEDARKLEQIYC-------------------------DPSQRLVADCVLMDVD  285 (415)
Q Consensus       237 ~~~------~n~IlVGD~~~Sv~ll~y~~~~~~L~~var-------------------------D~~~~~vta~~~Ld~d  285 (415)
                      ...      +.+++.|..-..+.++  +...++....-.                         +....+++++.+-+..
T Consensus       264 ~~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~  341 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGGSSKTFLTIW--NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDK  341 (437)
T ss_dssp             EECTTTCTTEEEEEEESTTEEEEEE--ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTE
T ss_pred             EeccccCCCccEEEEEcCCCcEEEE--EcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCce
Confidence            432      2367777666666555  444333322222                         1245568888887555


Q ss_pred             eEEEeCCCCcEEEEecCC
Q 014962          286 TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       286 ~~l~aD~~gNl~vl~~~~  303 (415)
                      .++.+..+|.|.++....
T Consensus       342 ~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             EEEEEGGGTEEEEEETTC
T ss_pred             EEEecCCCCeEEEEECCC
Confidence            788899999999999654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.80  E-value=0.0013  Score=62.14  Aligned_cols=190  Identities=12%  Similarity=0.136  Sum_probs=113.2

Q ss_pred             ecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc-EEEEEeCCCCC---eEEEEEEEE-E-CCeeEEEEeeecCCCCCCCCC
Q 014962           24 HSESRLLIVMRTELNNDTCSSDICCVDPLSGS-VLSSFKLELGE---TGKSMELVR-V-GHEQVLVVGTSLSSGPAIMPS   97 (415)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~-~i~s~~l~~~E---~~~si~~~~-l-~~~~~lvVGT~~~~~~~~~~~   97 (415)
                      +|+.+.++.+..+       ..|++.|..+.+ .+..+....++   .+.++.... + .+..++++|+.          
T Consensus       126 s~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------  188 (357)
T 3i2n_A          126 GEGAPEIVTGSRD-------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD----------  188 (357)
T ss_dssp             C-CCCEEEEEETT-------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET----------
T ss_pred             CCCccEEEEEeCC-------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc----------
Confidence            4455555544322       359999998876 66766665554   444443211 2 24578888754          


Q ss_pred             CCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceE
Q 014962           98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL  177 (415)
Q Consensus        98 ~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L  177 (415)
                            .|.|.+|++..                                                            .++
T Consensus       189 ------d~~i~i~d~~~------------------------------------------------------------~~~  202 (357)
T 3i2n_A          189 ------NGDIKLFDLRN------------------------------------------------------------MAL  202 (357)
T ss_dssp             ------TSEEEEEETTT------------------------------------------------------------TEE
T ss_pred             ------CCeEEEEECcc------------------------------------------------------------Cce
Confidence                  47888888772                                                            122


Q ss_pred             EEEEEEecCCceEEEeee----CCceEEEEe-CCeEEEEeeCCCCccceeeee---eeccceEEEEEEEe--CC-EEEEe
Q 014962          178 RLAYSTTWPGMVLAICPY----LDRYFLASA-GNAFYVCGFPNDNPQRVRRFA---VGRTRFMIMLLTAH--FT-RIAVG  246 (415)
Q Consensus       178 ~l~~~~~~~g~V~al~~~----~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a---~~~~~~~i~sI~~~--~n-~IlVG  246 (415)
                        +.....+++|.+++--    .+.+|+++. .+.|.+|++...  +.+....   .......+.++...  +. +++.|
T Consensus       203 --~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          203 --RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ--HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             --EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE--ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             --eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC--CcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence              2335567889988854    466465553 567999999752  2222211   11122245555543  44 78888


Q ss_pred             ecCCcEEEEEEEccCC------------------eEEEEecCCCcceeEEEEeeeCC-eEE-EeCCCCcEEEEecC
Q 014962          247 DCRDGILFYSYHEDAR------------------KLEQIYCDPSQRLVADCVLMDVD-TAV-VSDRKGSIAVLSCS  302 (415)
Q Consensus       247 D~~~Sv~ll~y~~~~~------------------~L~~varD~~~~~vta~~~Ld~d-~~l-~aD~~gNl~vl~~~  302 (415)
                      ..-..+.++.++....                  .+..+.  .....++++.+-.++ .++ .+..+|.|.++...
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            8888898888774322                  122222  235578888886444 565 68889999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.79  E-value=0.026  Score=53.35  Aligned_cols=199  Identities=9%  Similarity=0.058  Sum_probs=122.0

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc--EEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS--VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~--~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~   94 (415)
                      ....++++|+.+.++++..+       ..|++.|..+.+  .+..+.- ....+.++...  .+..+|+.|..       
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d-------~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~~~~~-------   72 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNN-------HEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWA--PDSNRIVTCGT-------   72 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSS-------SEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEE--TTTTEEEEEET-------
T ss_pred             CeEEEEECCCCCEEEEEeCC-------CEEEEEeCCCCcEEeeeeecC-CCCcccEEEEe--CCCCEEEEEcC-------
Confidence            67889999999888776432       469999988876  5555542 23445555432  35578887753       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               .|.|.+|++..                                                            
T Consensus        73 ---------dg~i~vwd~~~------------------------------------------------------------   83 (372)
T 1k8k_C           73 ---------DRNAYVWTLKG------------------------------------------------------------   83 (372)
T ss_dssp             ---------TSCEEEEEEET------------------------------------------------------------
T ss_pred             ---------CCeEEEEECCC------------------------------------------------------------
Confidence                     47899999872                                                            


Q ss_pred             ceEEE-EEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecC
Q 014962          175 WQLRL-AYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCR  249 (415)
Q Consensus       175 ~~L~l-~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~  249 (415)
                      .++.. .......++|.+++-. .|++|+++. ...|.+|++.......+...-.......+.++..  .++++++|..-
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            01111 1123456788888744 456465554 4569999998632111111111111224555554  56799999988


Q ss_pred             CcEEEEEEE----------------ccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          250 DGILFYSYH----------------EDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       250 ~Sv~ll~y~----------------~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      ..+.++..+                ...++....-. .....++++.+-.+ ..++.+..+|.|.++...
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            888777643                11223322222 34557888888644 478888999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.75  E-value=0.013  Score=62.22  Aligned_cols=195  Identities=12%  Similarity=0.133  Sum_probs=122.3

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~   95 (415)
                      ...+.+++||+.+.++++..       .+.|++.|..+++.+..+.... ..+.++..  ..+..+|++|+.        
T Consensus        14 ~~v~~i~~sp~~~~la~~~~-------~g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~--s~~~~~l~~~~~--------   75 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLY-------SGRVEIWNYETQVEVRSIQVTE-TPVRAGKF--IARKNWIIVGSD--------   75 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEECCS-SCEEEEEE--EGGGTEEEEEET--------
T ss_pred             CceEEEEECCCCCEEEEEeC-------CCEEEEEECCCCceEEEEecCC-CcEEEEEE--eCCCCEEEEEeC--------
Confidence            36788999999998887752       2469999999999888877432 33444332  135578888854        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|++..                                                   |        .
T Consensus        76 --------dg~i~vw~~~~---------------------------------------------------~--------~   88 (814)
T 3mkq_A           76 --------DFRIRVFNYNT---------------------------------------------------G--------E   88 (814)
T ss_dssp             --------TSEEEEEETTT---------------------------------------------------C--------C
T ss_pred             --------CCeEEEEECCC---------------------------------------------------C--------c
Confidence                    47888988762                                                   0        1


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE---eCCEEEEeecCC
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HFTRIAVGDCRD  250 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~---~~n~IlVGD~~~  250 (415)
                      .+..+  ....++|++++-- .|.+|+.+. ...|.+|++.... ........+..  .+.++..   .++++++|..-.
T Consensus        89 ~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           89 KVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             EEEEE--ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEEEEECCSS--CEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEEE--ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCC--cEEEEEEEcCCCCEEEEEeCCC
Confidence            22222  3356888888844 455455544 3579999997521 22222222233  3445543   566888898888


Q ss_pred             cEEEEEEEccCCeEEEEecCCCcceeEEEEee---eCCeEEEeCCCCcEEEEecC
Q 014962          251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLM---DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L---d~d~~l~aD~~gNl~vl~~~  302 (415)
                      .+.++............  ......+.++.+-   +...++.+..+|.|.+++..
T Consensus       164 ~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~  216 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (814)
T ss_dssp             EEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred             eEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            88776543333333332  2333556666665   44578889999999999854

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.75  E-value=0.041  Score=54.34  Aligned_cols=217  Identities=13%  Similarity=0.121  Sum_probs=125.3

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP   96 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~   96 (415)
                      ....++++|+. .++.+..       -..|++.|..+++.+..+.- ....+.++......+..+++.|+.         
T Consensus       164 ~V~~l~~~~~~-~l~s~s~-------dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~---------  225 (464)
T 3v7d_B          164 GVWALKYAHGG-ILVSGST-------DRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSR---------  225 (464)
T ss_dssp             CEEEEEECSTT-EEEEEET-------TSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEEEEET---------
T ss_pred             CEEEEEEcCCC-EEEEEeC-------CCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEEEEcC---------
Confidence            55667777665 3333322       24699999999988776652 356677776665566688888865         


Q ss_pred             CCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccce
Q 014962           97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ  176 (415)
Q Consensus        97 ~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  176 (415)
                             .|.|.+|++......                ..         ..+..........|+           ....-
T Consensus       226 -------d~~i~vwd~~~~~~~----------------~~---------~~~~~~~~~~~~~~~-----------~~~~~  262 (464)
T 3v7d_B          226 -------DNTLHVWKLPKESSV----------------PD---------HGEEHDYPLVFHTPE-----------ENPYF  262 (464)
T ss_dssp             -------TSCEEEEECCCCCCC-------------------------------CCSSEEESCGG-----------GCTTE
T ss_pred             -------CCcEEEeeCCCCccc----------------cc---------ccccCCcceEeeccC-----------CCeEE
Confidence                   467888888731000                00         000000000000010           00011


Q ss_pred             EEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEE
Q 014962          177 LRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFY  255 (415)
Q Consensus       177 L~l~~~~~~~g~V~al~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll  255 (415)
                      +..  .....++|.++..- +.+|+++. .+.|++|++..  .+.+.....+............++++++|..-..+.++
T Consensus       263 ~~~--~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw  337 (464)
T 3v7d_B          263 VGV--LRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW  337 (464)
T ss_dssp             EEE--ECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             EEE--ccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCC--CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            211  23456788888655 54366554 56699999975  23344333333344444555567899999988888665


Q ss_pred             EEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          256 SYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       256 ~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                        +...++....-+ .....++++.+ +++.++.+..+|.|.++....
T Consensus       338 --d~~~~~~~~~~~-~h~~~v~~~~~-~~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          338 --DLENGELMYTLQ-GHTALVGLLRL-SDKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             --ETTTTEEEEEEC-CCSSCEEEEEE-CSSEEEEEETTSEEEEEETTT
T ss_pred             --ECCCCcEEEEEe-CCCCcEEEEEE-cCCEEEEEeCCCcEEEEECCC
Confidence              444454443333 24556766666 567889999999999998643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.0098  Score=57.16  Aligned_cols=109  Identities=7%  Similarity=0.058  Sum_probs=67.5

Q ss_pred             eEEEeeeCCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEE
Q 014962          189 VLAICPYLDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQI  267 (415)
Q Consensus       189 V~al~~~~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~v  267 (415)
                      +.+++-..+..+++ +..+.|++|++...  +.+.....+..+.....+...++++++|..-..+.++..+.... +..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~  285 (425)
T 1r5m_A          209 GVDVEWVDDDKFVIPGPKGAIFVYQITEK--TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCF  285 (425)
T ss_dssp             BSCCEEEETTEEEEECGGGCEEEEETTCS--SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-SEEE
T ss_pred             eeEEEEcCCCEEEEEcCCCeEEEEEcCCC--ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-ceEe
Confidence            55555444432444 35556999999863  33333333344444445555678999999888887665443221 2222


Q ss_pred             ecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          268 YCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       268 arD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                        ......++++.+..++.++.+..+|.|.++...
T Consensus       286 --~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~  318 (425)
T 1r5m_A          286 --YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK  318 (425)
T ss_dssp             --CCCSSCEEEEEEETTTEEEEEETTSEEEEEETT
T ss_pred             --cCCCccEEEEEECCCCEEEEEeCCCcEEEEECC
Confidence              224557888888765588888999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.73  E-value=0.03  Score=52.26  Aligned_cols=195  Identities=7%  Similarity=0.015  Sum_probs=117.3

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ..+.++++|+.+.++.+..+       ..|++.|..+++.+..+.-. ...+.   .+.+. +..+|+.|..        
T Consensus        25 ~v~~~~~s~~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~h-~~~v~---~~~~~~~~~~l~s~~~--------   85 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSAD-------KLIKIWGAYDGKFEKTISGH-KLGIS---DVAWSSDSNLLVSASD--------   85 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEECCC-SSCEE---EEEECTTSSEEEEEET--------
T ss_pred             cEEEEEECCCCCEEEEeeCC-------CeEEEEeCCCcccchhhccC-CCceE---EEEEcCCCCEEEEECC--------
Confidence            56788999998877766533       35899998888876655422 22333   33443 4578887744        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|++..                                                           +.
T Consensus        86 --------d~~i~vwd~~~-----------------------------------------------------------~~   98 (312)
T 4ery_A           86 --------DKTLKIWDVSS-----------------------------------------------------------GK   98 (312)
T ss_dssp             --------TSEEEEEETTT-----------------------------------------------------------CC
T ss_pred             --------CCEEEEEECCC-----------------------------------------------------------Cc
Confidence                    46788888762                                                           01


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEE
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~  253 (415)
                      .+..+  ....+.|.+++-. .+.+|+.+ ....|.+|++...  +.+.....+..+.........++++++|..-..+.
T Consensus        99 ~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
T 4ery_A           99 CLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  174 (312)
T ss_dssp             EEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            12222  2345677777633 35535444 3466999999752  33443333333434444445678999998888886


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++  +...++....-.......+.++.+-. ...++++..+|.|.++.+..
T Consensus       175 ~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          175 IW--DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             EE--ETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EE--ECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            65  44444333322233344566666643 34788889999999998643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.69  E-value=0.0072  Score=58.94  Aligned_cols=201  Identities=10%  Similarity=0.052  Sum_probs=118.4

Q ss_pred             cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCCC
Q 014962           18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIMP   96 (415)
Q Consensus        18 p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~~   96 (415)
                      +|-++++|+.+.+++++...     -..|++.|..+++.+..++..  ..+.+   +.|. +..+++.|+.         
T Consensus       136 ~~~v~fSpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~~~~--~~V~~---v~fspdg~~l~s~s~---------  196 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEIETR--GEVKD---LHFSTDGKVVAYITG---------  196 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEEECS--SCCCE---EEECTTSSEEEEECS---------
T ss_pred             EEEEEEcCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEeCCC--CceEE---EEEccCCceEEeccc---------
Confidence            56789999999998887432     257999999999988777632  33444   4454 5578877743         


Q ss_pred             CCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccce
Q 014962           97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ  176 (415)
Q Consensus        97 ~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  176 (415)
                              +.+.++....                                                   |        ..
T Consensus       197 --------~~~~~~~~~~---------------------------------------------------~--------~~  209 (365)
T 4h5i_A          197 --------SSLEVISTVT---------------------------------------------------G--------SC  209 (365)
T ss_dssp             --------SCEEEEETTT---------------------------------------------------C--------CE
T ss_pred             --------eeEEEEEecc---------------------------------------------------C--------cc
Confidence                    1233333220                                                   0        01


Q ss_pred             EEEEEEEecCCceEEEeee-CCceEEEEe-CC----eEEEEeeCCCCccceee--eeeeccceEEEEEEEeCCEEEEeec
Q 014962          177 LRLAYSTTWPGMVLAICPY-LDRYFLASA-GN----AFYVCGFPNDNPQRVRR--FAVGRTRFMIMLLTAHFTRIAVGDC  248 (415)
Q Consensus       177 L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~----~l~v~~~~~~~~~~L~~--~a~~~~~~~i~sI~~~~n~IlVGD~  248 (415)
                      +.......-.+.|.+++-. .|++|+++. .+    .+..|+........++.  ......+...+.+...+.+|++|..
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            1111111223456666533 456454443 22    24455554321111111  1112223333444457889999999


Q ss_pred             CCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCCCcC
Q 014962          249 RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSDRLE  306 (415)
Q Consensus       249 ~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~~~~  306 (415)
                      -.+|.++  +....++...-...+..+|+++.|-.+ ..++.+-.++.|.++++|++..
T Consensus       290 D~~V~iw--d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~  346 (365)
T 4h5i_A          290 DNSIALV--KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA  346 (365)
T ss_dssp             TSCEEEE--ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred             CCEEEEE--ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            8888665  566666655445667788999999744 4777888999999999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0014  Score=62.89  Aligned_cols=171  Identities=8%  Similarity=0.041  Sum_probs=103.6

Q ss_pred             EEEEeCCC--ccCEEEEec--CCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEE
Q 014962            9 VRKFHLGG--TPKKVLYHS--ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLV   83 (415)
Q Consensus         9 i~~i~L~~--tp~~I~y~~--~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lv   83 (415)
                      ++.+.++.  ....++++|  ..+.++.+..+       ..|++.|..+++.+..+.......+.|+   .+. +..+++
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~~i~~~---~~~pdg~~la  186 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNR-------GTIGFQSYEDDSQYIVHSAKSDVEYSSG---VLHKDSLLLA  186 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETT-------CCEEEEESSSSCEEEEECCCSSCCCCEE---EECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC-------CcEEEEECCCCcEEEEEecCCCCceEEE---EECCCCCEEE
Confidence            44455453  467788888  77776655533       3599999998888665544444455444   343 557888


Q ss_pred             EeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCC
Q 014962           84 VGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDAS  163 (415)
Q Consensus        84 VGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  163 (415)
                      +|+.                .|.|.+|++...                                                
T Consensus       187 sg~~----------------dg~i~iwd~~~~------------------------------------------------  202 (343)
T 3lrv_A          187 LYSP----------------DGILDVYNLSSP------------------------------------------------  202 (343)
T ss_dssp             EECT----------------TSCEEEEESSCT------------------------------------------------
T ss_pred             EEcC----------------CCEEEEEECCCC------------------------------------------------
Confidence            8854                578999988830                                                


Q ss_pred             CCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeeeee---eccce--EEEEEE
Q 014962          164 CDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAV---GRTRF--MIMLLT  237 (415)
Q Consensus       164 ~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~---~~~~~--~i~sI~  237 (415)
                         ..      ...++  +..-.++|++|+-- +|++|+++....|.+|++....  .+.....   ...+.  ......
T Consensus       203 ---~~------~~~~~--~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T 3lrv_A          203 ---DQ------ASSRF--PVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV--GTLAYPTYTIPEFKTGTVTYDID  269 (343)
T ss_dssp             ---TS------CCEEC--CCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSST--TCBSSCCCBC-----CCEEEEEC
T ss_pred             ---CC------CccEE--eccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCC--cceeecccccccccccceEEEEC
Confidence               00      00011  01235788888733 4665777777789999998632  2221111   11111  235555


Q ss_pred             EeCCEEEEeec-CCcEEEEEEEccCCeEEE
Q 014962          238 AHFTRIAVGDC-RDGILFYSYHEDARKLEQ  266 (415)
Q Consensus       238 ~~~n~IlVGD~-~~Sv~ll~y~~~~~~L~~  266 (415)
                      ..+.++++|.. -..+.++.|+........
T Consensus       270 ~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          270 DSGKNMIAYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred             CCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence            67889999777 778999998766655544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.66  E-value=0.017  Score=55.06  Aligned_cols=201  Identities=10%  Similarity=0.107  Sum_probs=121.9

Q ss_pred             EEEEeCCC-ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEee
Q 014962            9 VRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGT   86 (415)
Q Consensus         9 i~~i~L~~-tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT   86 (415)
                      ++.+..+. ....++++|+.+.++.+..       ...|++.|..+.+....+... ...+.+   +.+. +..+|+.|.
T Consensus       115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~-------dg~v~i~~~~~~~~~~~~~~~-~~~v~~---~~~spdg~~lasg~  183 (321)
T 3ow8_A          115 IKSIDAGPVDAWTLAFSPDSQYLATGTH-------VGKVNIFGVESGKKEYSLDTR-GKFILS---IAYSPDGKYLASGA  183 (321)
T ss_dssp             EEEEECCTTCCCCEEECTTSSEEEEECT-------TSEEEEEETTTCSEEEEEECS-SSCEEE---EEECTTSSEEEEEE
T ss_pred             EEEEeCCCccEEEEEECCCCCEEEEEcC-------CCcEEEEEcCCCceeEEecCC-CceEEE---EEECCCCCEEEEEc
Confidence            34444443 5667889998887776532       246999999888876665543 334444   3343 557888885


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      .                .|.|.+|++..                                                    
T Consensus       184 ~----------------dg~i~iwd~~~----------------------------------------------------  195 (321)
T 3ow8_A          184 I----------------DGIINIFDIAT----------------------------------------------------  195 (321)
T ss_dssp             T----------------TSCEEEEETTT----------------------------------------------------
T ss_pred             C----------------CCeEEEEECCC----------------------------------------------------
Confidence            4                46788887761                                                    


Q ss_pred             ccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEE
Q 014962          167 IKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA  244 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~Il  244 (415)
                             +..+..+  ....++|++++-- +|++|+.+. ...|.+|++...  +.+.....+......+.....+.+++
T Consensus       196 -------~~~~~~~--~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~  264 (321)
T 3ow8_A          196 -------GKLLHTL--EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--NLAGTLSGHASWVLNVAFCPDDTHFV  264 (321)
T ss_dssp             -------TEEEEEE--CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             -------CcEEEEE--cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--ceeEEEcCCCCceEEEEECCCCCEEE
Confidence                   0011111  2345778888743 456344433 345999999752  33333222332333333344677899


Q ss_pred             EeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          245 VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       245 VGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      .|..-..+.++.  ...++....-.. ....|.++.|-.+ ..++.+..+|.|.++++|
T Consensus       265 s~s~D~~v~iwd--~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          265 SSSSDKSVKVWD--VGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTSCEEEEE--TTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEeCCCcEEEEe--CCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            998888886654  444444433332 4457888888644 478888999999998865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.64  E-value=0.059  Score=53.14  Aligned_cols=186  Identities=11%  Similarity=0.081  Sum_probs=115.9

Q ss_pred             EEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCcc
Q 014962           22 LYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAE  101 (415)
Q Consensus        22 ~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~  101 (415)
                      +.+++.+.++.+..+       ..|++.|..+++.+..+.-. ...+.|+..    +..++++|+.              
T Consensus       138 ~~~~d~~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~----~~~~l~sg~~--------------  191 (435)
T 1p22_A          138 CLQYDDQKIVSGLRD-------NTIKIWDKNTLECKRILTGH-TGSVLCLQY----DERVIITGSS--------------  191 (435)
T ss_dssp             EEECCSSEEEEEESS-------SCEEEEESSSCCEEEEECCC-SSCEEEEEC----CSSEEEEEET--------------
T ss_pred             EEEECCCEEEEEeCC-------CeEEEEeCCCCeEEEEEcCC-CCcEEEEEE----CCCEEEEEcC--------------
Confidence            344455555554422       46999999999887765532 345555543    5678888855              


Q ss_pred             ccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEE
Q 014962          102 STKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAY  181 (415)
Q Consensus       102 ~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~  181 (415)
                        .|.|.+|++..                                                   |        ..+..+ 
T Consensus       192 --dg~i~vwd~~~---------------------------------------------------~--------~~~~~~-  209 (435)
T 1p22_A          192 --DSTVRVWDVNT---------------------------------------------------G--------EMLNTL-  209 (435)
T ss_dssp             --TSCEEEEESSS---------------------------------------------------C--------CEEEEE-
T ss_pred             --CCeEEEEECCC---------------------------------------------------C--------cEEEEE-
Confidence              47888988872                                                   0        011111 


Q ss_pred             EEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962          182 STTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       182 ~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                       ..-.++|.+++-- +.+|+++ ..+.|.+|++.......+.. ........+.++...++++++|..-..+.++  +..
T Consensus       210 -~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw--d~~  284 (435)
T 1p22_A          210 -IHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDFDDKYIVSASGDRTIKVW--NTS  284 (435)
T ss_dssp             -CCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEE-EECCCSSCEEEEEEETTEEEEEETTSEEEEE--ETT
T ss_pred             -cCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeee-EecCCCCcEEEEEeCCCEEEEEeCCCeEEEE--ECC
Confidence             2346778888754 4435554 44669999998632111111 2222233567777789999999988887665  444


Q ss_pred             CCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          261 ARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       261 ~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      .++....-. .....++++.+ +++.++++..+|.|.++...
T Consensus       285 ~~~~~~~~~-~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~  324 (435)
T 1p22_A          285 TCEFVRTLN-GHKRGIACLQY-RDRLVVSGSSDNTIRLWDIE  324 (435)
T ss_dssp             TCCEEEEEE-CCSSCEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred             cCcEEEEEc-CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECC
Confidence            444433322 24456777766 77889999999999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.63  E-value=0.024  Score=55.33  Aligned_cols=207  Identities=14%  Similarity=0.080  Sum_probs=121.5

Q ss_pred             EEEeC-CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962           10 RKFHL-GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS   87 (415)
Q Consensus        10 ~~i~L-~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~   87 (415)
                      ++++. +..|..++++|+.+.++++...      ...|+++|..+++.+..+..  ...+.   .+.+. +..+++++..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~--~~~~~---~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          205 ATVDLTGKWSKILLYDPIRDLVYCSNWI------SEDISVIDRKTKLEIRKTDK--IGLPR---GLLLSKDGKELYIAQF  273 (433)
T ss_dssp             EEEECSSSSEEEEEEETTTTEEEEEETT------TTEEEEEETTTTEEEEECCC--CSEEE---EEEECTTSSEEEEEEE
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEecC------CCcEEEEECCCCcEEEEecC--CCCce---EEEEcCCCCEEEEEEC
Confidence            44543 3478899999998877666522      23699999999988776554  33333   34443 4567777765


Q ss_pred             cCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCc
Q 014962           88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI  167 (415)
Q Consensus        88 ~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~  167 (415)
                      ...        .-....|.|++|++..                                                   | 
T Consensus       274 ~~~--------~~~~~dg~i~~~d~~~---------------------------------------------------~-  293 (433)
T 3bws_A          274 SAS--------NQESGGGRLGIYSMDK---------------------------------------------------E-  293 (433)
T ss_dssp             ESC--------TTCSCCEEEEEEETTT---------------------------------------------------T-
T ss_pred             CCC--------ccccCCCeEEEEECCC---------------------------------------------------C-
Confidence            321        1112578899988762                                                   0 


Q ss_pred             cccccccceEEEEEEEecCCceEEEeee-CCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEE
Q 014962          168 KLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA  244 (415)
Q Consensus       168 ~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~Il  244 (415)
                             ..+..+   ...+.+.+++-- .|++|+++  -.+.|.+|++..  .+.+.... .........+...+.+++
T Consensus       294 -------~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--~~~~~~~~-~~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          294 -------KLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--KKVQKSIP-VFDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             -------EEEEEE---EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT--TEEEEEEE-CSSSEEEEEECTTSSEEE
T ss_pred             -------cEEeec---cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC--CcEEEEec-CCCCCCeEEEcCCCCEEE
Confidence                   011211   223456666532 35446554  456799999975  23333322 222333334444577899


Q ss_pred             EeecCCc-E------------EEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeC-CCCcEEEEecC
Q 014962          245 VGDCRDG-I------------LFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSD-RKGSIAVLSCS  302 (415)
Q Consensus       245 VGD~~~S-v------------~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD-~~gNl~vl~~~  302 (415)
                      +++.... +            .+..|+...+++...-..  ..++.++.+-.+ ..+++++ .++.|.+++.+
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            9886542 1            467778777665544433  345677777544 3556665 48999998864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.016  Score=54.46  Aligned_cols=213  Identities=9%  Similarity=0.058  Sum_probs=122.7

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeE---------EEEEEEEEC-C
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETG---------KSMELVRVG-H   78 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~---------~si~~~~l~-~   78 (415)
                      ++.++....+..++++|+.+.++++..+..  .....|+++|..+......+.....+.+         ..+..+.+. +
T Consensus       109 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (369)
T 3zwl_B          109 VATWKSPVPVKRVEFSPCGNYFLAILDNVM--KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK  186 (369)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEECCBT--TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred             EEEeecCCCeEEEEEccCCCEEEEecCCcc--CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence            455666778889999999888877764421  1224577777654432111111111110         023333343 4


Q ss_pred             eeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCC
Q 014962           79 EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSS  158 (415)
Q Consensus        79 ~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  158 (415)
                      ..++++|+.                .|.|.+|++..                                            
T Consensus       187 ~~~l~~~~~----------------dg~i~i~d~~~--------------------------------------------  206 (369)
T 3zwl_B          187 GKYIIAGHK----------------DGKISKYDVSN--------------------------------------------  206 (369)
T ss_dssp             GCEEEEEET----------------TSEEEEEETTT--------------------------------------------
T ss_pred             CCEEEEEcC----------------CCEEEEEECCC--------------------------------------------
Confidence            467887754                47888888762                                            


Q ss_pred             CCCCCCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEE
Q 014962          159 PDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL  236 (415)
Q Consensus       159 ~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI  236 (415)
                       .             ...+..+  ....++|.+++-- .|.+|+++. .+.|.+|++..  .+.+.... ...+.....+
T Consensus       207 -~-------------~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~-~~~~~~~~~~  267 (369)
T 3zwl_B          207 -N-------------YEYVDSI--DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST--LQVLKKYE-TDCPLNTAVI  267 (369)
T ss_dssp             -T-------------TEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEE-CSSCEEEEEE
T ss_pred             -C-------------cEeEEEE--ecCCCceeEEEECCCCCEEEEecCCceEEEEECCC--Cceeeeec-CCCCceeEEe
Confidence             0             0012212  2346788888744 466455543 46799999976  23343322 3444555556


Q ss_pred             EEeCCEEEEeecCCcE------------EEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          237 TAHFTRIAVGDCRDGI------------LFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       237 ~~~~n~IlVGD~~~Sv------------~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ...+.++++|....+.            .+..|+....+....-.. ....++++.+-. ...++.++.+|.|.++++..
T Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec-ccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            6678899998877643            334455544444333222 345677888764 45788889999999998754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.63  E-value=0.049  Score=51.98  Aligned_cols=197  Identities=9%  Similarity=0.113  Sum_probs=121.3

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++.+..+       ..|++.|..+++.+..+..... .+.   .+.+. +..+++.|..        
T Consensus        57 ~v~~~~~s~d~~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~~-~v~---~~~~s~~~~~l~s~~~--------  117 (340)
T 1got_B           57 KIYAMHWGTDSRLLLSASQD-------GKLIIWDSYTTNKVHAIPLRSS-WVM---TCAYAPSGNYVACGGL--------  117 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------TEEEEEETTTCCEEEEEECSSS-CEE---EEEECTTSSEEEEEET--------
T ss_pred             ceEEEEECCCCCEEEEEeCC-------CcEEEEECCCCCcceEeecCCc-cEE---EEEECCCCCEEEEEeC--------
Confidence            55678888888877666533       3599999999988887776543 333   33443 4578888754        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.+.+|++...                                            .              .
T Consensus       118 --------d~~v~iw~~~~~--------------------------------------------~--------------~  131 (340)
T 1got_B          118 --------DNICSIYNLKTR--------------------------------------------E--------------G  131 (340)
T ss_dssp             --------TCEEEEEETTTC--------------------------------------------S--------------B
T ss_pred             --------CCeEEEEECccC--------------------------------------------C--------------C
Confidence                    367888877620                                            0              0


Q ss_pred             eEEEEEE-EecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEE
Q 014962          176 QLRLAYS-TTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       176 ~L~l~~~-~~~~g~V~al~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~  253 (415)
                      ..++... ..-.+.|.++.-..+..|+.+. ...|.+|++...  +.+.....+........+...+++++.|..-..+.
T Consensus       132 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG--QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC--cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            1111111 2346778887755544366554 455899999752  33333232333334444445677899999888887


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++.  ...+.....-. .....++++.|-. ...++.+..+|.+.++....
T Consensus       210 ~wd--~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          210 LWD--VREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             EEE--TTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEE--CCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence            754  43443332222 2445688888764 45788889999999998643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.62  E-value=0.019  Score=54.39  Aligned_cols=202  Identities=8%  Similarity=0.041  Sum_probs=120.2

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCC-CeEEEEEEEEEC-CeeEEEEeeecCCCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVG-HEQVLVVGTSLSSGPA   93 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~-E~~~si~~~~l~-~~~~lvVGT~~~~~~~   93 (415)
                      .....++++|+.+.++.+..+       ..|++.|..+.+....+.+... ..+.++   .+. +..+|++|+.      
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~------  116 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTD-------RNAYVWTLKGRTWKPTLVILRINRAARCV---RWAPNEKKFAVGSG------  116 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-------SCEEEEEEETTEEEEEEECCCCSSCEEEE---EECTTSSEEEEEET------
T ss_pred             CcccEEEEeCCCCEEEEEcCC-------CeEEEEECCCCeeeeeEEeecCCCceeEE---EECCCCCEEEEEeC------
Confidence            367788999988887766532       3589999888876666665543 344443   343 4578888864      


Q ss_pred             CCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccc
Q 014962           94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE  173 (415)
Q Consensus        94 ~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  173 (415)
                                .|.|.+|++...                                            .             
T Consensus       117 ----------d~~v~i~d~~~~--------------------------------------------~-------------  129 (372)
T 1k8k_C          117 ----------SRVISICYFEQE--------------------------------------------N-------------  129 (372)
T ss_dssp             ----------TSSEEEEEEETT--------------------------------------------T-------------
T ss_pred             ----------CCEEEEEEecCC--------------------------------------------C-------------
Confidence                      467899998830                                            0             


Q ss_pred             cceEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCC----------------CccceeeeeeeccceEEEE
Q 014962          174 TWQLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPND----------------NPQRVRRFAVGRTRFMIML  235 (415)
Q Consensus       174 ~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~----------------~~~~L~~~a~~~~~~~i~s  235 (415)
                      .+.+.........+.|.+++-. .|.+|+++ ..+.|++|++...                ..+.+.....+........
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (372)
T 1k8k_C          130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC  209 (372)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred             cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence            0111111122346788888744 45545554 3567999996410                0122322222222333333


Q ss_pred             EEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          236 LTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       236 I~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ....+++|++|..-..+.++..+. ...+..+.  .....++++.+-.++.++++-.+|.+.++....
T Consensus       210 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          210 FSANGSRVAWVSHDSTVCLADADK-KMAVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEGGG-TTEEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCC-CceeEEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            444677999999877776665432 22333333  234467888887666555555889999988654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.62  E-value=0.04  Score=53.76  Aligned_cols=176  Identities=11%  Similarity=0.048  Sum_probs=110.6

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCc
Q 014962           44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM  123 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~  123 (415)
                      ..|++.|..+++....+.......+.+++.-  .+..+|++|+.                .|.|.+|++..         
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~----------------dg~i~iwd~~~---------  165 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWS--HDGSFLSVGLG----------------NGLVDIYDVES---------  165 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEEC--TTSSEEEEEET----------------TSCEEEEETTT---------
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEEC--CCCCEEEEECC----------------CCeEEEEECcC---------
Confidence            4699999999999888888767777766432  35578998865                46788887762         


Q ss_pred             cccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEE
Q 014962          124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLAS  203 (415)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~  203 (415)
                                                                        +..+..+  ....++|.+++- ++.+|+.+
T Consensus       166 --------------------------------------------------~~~~~~~--~~~~~~v~~~~~-~~~~l~~~  192 (401)
T 4aez_A          166 --------------------------------------------------QTKLRTM--AGHQARVGCLSW-NRHVLSSG  192 (401)
T ss_dssp             --------------------------------------------------CCEEEEE--CCCSSCEEEEEE-ETTEEEEE
T ss_pred             --------------------------------------------------CeEEEEe--cCCCCceEEEEE-CCCEEEEE
Confidence                                                              0122222  245678888875 66645544


Q ss_pred             -eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee
Q 014962          204 -AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM  282 (415)
Q Consensus       204 -vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L  282 (415)
                       -...|.+|++.... +.+.....+............++++++|..-..+.++..  ...+....-. ....++.++.+-
T Consensus       193 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~--~~~~~~~~~~-~~~~~v~~~~~~  268 (401)
T 4aez_A          193 SRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA--RSSIPKFTKT-NHNAAVKAVAWC  268 (401)
T ss_dssp             ETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET--TCSSEEEEEC-CCSSCCCEEEEC
T ss_pred             cCCCCEEEEecccCc-ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC--CCCCccEEec-CCcceEEEEEEC
Confidence             34568999998432 223332333333333334446779999998888866644  3333332222 345678888886


Q ss_pred             e-CCeEEE-eC--CCCcEEEEecCC
Q 014962          283 D-VDTAVV-SD--RKGSIAVLSCSD  303 (415)
Q Consensus       283 d-~d~~l~-aD--~~gNl~vl~~~~  303 (415)
                      . .+.+++ +.  .+|.|.++....
T Consensus       269 p~~~~ll~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          269 PWQSNLLATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             TTSTTEEEEECCTTTCEEEEEETTT
T ss_pred             CCCCCEEEEecCCCCCEEEEEECCC
Confidence            4 344444 33  689999998643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.61  E-value=0.011  Score=55.16  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=58.3

Q ss_pred             eEEEEeCCC---ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCC-eEEEEEEEEEC-CeeEE
Q 014962            8 NVRKFHLGG---TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE-TGKSMELVRVG-HEQVL   82 (415)
Q Consensus         8 ~i~~i~L~~---tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E-~~~si~~~~l~-~~~~l   82 (415)
                      .+++++++.   .|+.++++|+.+.+++....      ...|.++|..+++.+..+.+.... .......+.+. +..++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l   96 (337)
T 1pby_B           23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             EEEEEECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEE
T ss_pred             EEEEEEcCCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEE
Confidence            456788888   79999999999877666522      246999999999988888875411 11112233343 44566


Q ss_pred             EEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        83 vVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      +++.....   .. +++.....|+|.+|++.
T Consensus        97 ~~~~~~~~---~~-~~~~~~~~~~i~v~d~~  123 (337)
T 1pby_B           97 AIYESPVR---LE-LTHFEVQPTRVALYDAE  123 (337)
T ss_dssp             EEEEEEEE---EC-SSCEEECCCEEEEEETT
T ss_pred             EEEecccc---cc-cccccccCceEEEEECC
Confidence            66643110   00 11111135788888765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.59  E-value=0.045  Score=51.38  Aligned_cols=193  Identities=11%  Similarity=0.128  Sum_probs=118.0

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEE-CCeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV-GHEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l-~~~~~lvVGT~~~~~~~~~   95 (415)
                      ..+.|+++|+.+.++.+..+       ..|++.|..+++.+..+..... .+.+   +.| .+..+|+.|..        
T Consensus        15 ~V~~~~fsp~~~~l~s~~~d-------g~v~lWd~~~~~~~~~~~~~~~-~v~~---~~~~~~~~~l~s~s~--------   75 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYS-------GRVELWNYETQVEVRSIQVTET-PVRA---GKFIARKNWIIVGSD--------   75 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSS-CEEE---EEEEGGGTEEEEEET--------
T ss_pred             ceEEEEECCCCCEEEEEcCC-------CcEEEEECCCCceeEEeeccCC-cEEE---EEEeCCCCEEEEECC--------
Confidence            57889999998887766532       4699999999988877765432 3333   333 35578888754        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              -|.|.+|++..                                                   |        .
T Consensus        76 --------d~~i~vwd~~~---------------------------------------------------~--------~   88 (304)
T 2ynn_A           76 --------DFRIRVFNYNT---------------------------------------------------G--------E   88 (304)
T ss_dssp             --------TSEEEEEETTT---------------------------------------------------C--------C
T ss_pred             --------CCEEEEEECCC---------------------------------------------------C--------c
Confidence                    46788887762                                                   0        1


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE---eCCEEEEeecCC
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HFTRIAVGDCRD  250 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~---~~n~IlVGD~~~  250 (415)
                      .+..+  ..-.+.|++|+-- .+.+|+.|. ...|.+|++...  ..+.. .+....-.|.++..   .+++++.|..-.
T Consensus        89 ~~~~~--~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~-~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           89 KVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             EEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT--TEEEE-EECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             EEEEE--eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC--cchhh-hhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            22222  3356788888844 355354443 356999999752  12222 12122224555554   346888898888


Q ss_pred             cEEEEEEEccCCeEEEEecCCCcceeEEEEee---eCCeEEEeCCCCcEEEEecC
Q 014962          251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLM---DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L---d~d~~l~aD~~gNl~vl~~~  302 (415)
                      .+.++........+...  ......+..+.+.   +...++.+..+|.|.++...
T Consensus       164 ~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             EEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             eEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            88776554333333332  2233455555554   23478888999999999854

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.57  E-value=0.0091  Score=57.16  Aligned_cols=198  Identities=10%  Similarity=0.067  Sum_probs=117.5

Q ss_pred             CccCEEEEec-CCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC------------CCCeEEEEEEEEEC--Cee
Q 014962           16 GTPKKVLYHS-ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE------------LGETGKSMELVRVG--HEQ   80 (415)
Q Consensus        16 ~tp~~I~y~~-~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~------------~~E~~~si~~~~l~--~~~   80 (415)
                      .....++++| +.+.++.+..+       ..|++.|..+.+....+...            ....+.++   .+.  +..
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~  113 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSD-------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV---QWYPHDTG  113 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETT-------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE---EECTTCTT
T ss_pred             CcEEEEEEecCCCCEEEEEcCC-------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEE---EEccCCCc
Confidence            3667899999 77777766533       35899998877644433321            23344444   333  335


Q ss_pred             EEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCC
Q 014962           81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPD  160 (415)
Q Consensus        81 ~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  160 (415)
                      +++.|+.                .|.|.+|++..                                              
T Consensus       114 ~l~s~~~----------------d~~i~iwd~~~----------------------------------------------  131 (408)
T 4a11_B          114 MFTSSSF----------------DKTLKVWDTNT----------------------------------------------  131 (408)
T ss_dssp             CEEEEET----------------TSEEEEEETTT----------------------------------------------
T ss_pred             EEEEEeC----------------CCeEEEeeCCC----------------------------------------------
Confidence            6776643                46888887762                                              


Q ss_pred             CCCCCCccccccccceEEEEEEEecCCceEEEeee----CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEE
Q 014962          161 DASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY----LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIML  235 (415)
Q Consensus       161 ~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~----~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~s  235 (415)
                                    .+.  +......+++.+++-.    ++.+|+++ ..+.|.+|++...  +.+.....+..+.....
T Consensus       132 --------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          132 --------------LQT--ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--SCSHILQGHRQEILAVS  193 (408)
T ss_dssp             --------------TEE--EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--CCCEEECCCCSCEEEEE
T ss_pred             --------------Ccc--ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--ceeeeecCCCCcEEEEE
Confidence                          011  2223356777777643    23335544 4456999999763  33433333333333333


Q ss_pred             EEEeCC-EEEEeecCCcEEEEEEEccCCeEEEEec-------------CCCcceeEEEEeeeC-CeEEEeCCCCcEEEEe
Q 014962          236 LTAHFT-RIAVGDCRDGILFYSYHEDARKLEQIYC-------------DPSQRLVADCVLMDV-DTAVVSDRKGSIAVLS  300 (415)
Q Consensus       236 I~~~~n-~IlVGD~~~Sv~ll~y~~~~~~L~~var-------------D~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~  300 (415)
                      ....++ ++++|+.-..+.++..+.....+..+..             ......++++.+-.+ ..++.+..+|.|.+++
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            334455 5778888888877765544333333311             234567888888644 4788889999999999


Q ss_pred             cCC
Q 014962          301 CSD  303 (415)
Q Consensus       301 ~~~  303 (415)
                      ...
T Consensus       274 ~~~  276 (408)
T 4a11_B          274 SSN  276 (408)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.57  E-value=0.029  Score=52.25  Aligned_cols=233  Identities=12%  Similarity=0.099  Sum_probs=129.2

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeC---CCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEE
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDP---LSGSVLSSFKLELGETGKSMELVRVG-HEQVLV   83 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~---~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lv   83 (415)
                      .+..++....|..++++|+.+.++++...      ...|.++|.   .+.+.+..+.  ....+.++   .+. +..+++
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~---~~s~dg~~l~  144 (343)
T 1ri6_A           76 FAAESALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVE--GLDGCHSA---NISPDNRTLW  144 (343)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEEC--CCTTBCCC---EECTTSSEEE
T ss_pred             eccccccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCcccccccccc--CCCCceEE---EECCCCCEEE
Confidence            45577777799999999999877666521      245777776   3334444433  23333332   233 345666


Q ss_pred             EeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCC
Q 014962           84 VGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDAS  163 (415)
Q Consensus        84 VGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  163 (415)
                      ++..               ..|+|.+|++..                                             +   
T Consensus       145 ~~~~---------------~~~~v~~~d~~~---------------------------------------------~---  161 (343)
T 1ri6_A          145 VPAL---------------KQDRICLFTVSD---------------------------------------------D---  161 (343)
T ss_dssp             EEEG---------------GGTEEEEEEECT---------------------------------------------T---
T ss_pred             EecC---------------CCCEEEEEEecC---------------------------------------------C---
Confidence            6532               246889998872                                             0   


Q ss_pred             CCCccccccccceEEEEE--EE--ecCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccc--eeeeeeecc----c
Q 014962          164 CDGIKLEETETWQLRLAY--ST--TWPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQR--VRRFAVGRT----R  230 (415)
Q Consensus       164 ~~g~~~~~~~~~~L~l~~--~~--~~~g~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~--L~~~a~~~~----~  230 (415)
                        |         ++..+.  ..  .....+.+++-- .|++|+++.  .+.+.+|++.....+.  +........    .
T Consensus       162 --~---------~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          162 --G---------HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT  230 (343)
T ss_dssp             --S---------CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred             --C---------ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence              0         222221  11  222345555522 456465553  5679999996422111  111111111    1


Q ss_pred             eEE--EEEEEeCCEEEEeecC-CcEEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeC-CCCcEEEEecCCCc
Q 014962          231 FMI--MLLTAHFTRIAVGDCR-DGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSD-RKGSIAVLSCSDRL  305 (415)
Q Consensus       231 ~~i--~sI~~~~n~IlVGD~~-~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD-~~gNl~vl~~~~~~  305 (415)
                      ..+  ..+...+.++++++.. ..+.++..+...+++..+..-.....+.++.+-. ...+++++ .++.+.+++++.. 
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~-  309 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE-  309 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT-
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCC-
Confidence            123  3444457788887754 4576666664455555544332223355666643 34567776 5788988887641 


Q ss_pred             CCCCCCCCccceeeeeecCccccEEEe
Q 014962          306 EDNASPECNLTPNCAYHMGEIAVSIRK  332 (415)
Q Consensus       306 ~~~~~~~~kL~~~~~fhlGd~Vt~~~~  332 (415)
                          .  .++.....+..|..+..+..
T Consensus       310 ----~--g~~~~~~~~~~g~~p~~i~~  330 (343)
T 1ri6_A          310 ----Q--GLLHEKGRYAVGQGPMWVVV  330 (343)
T ss_dssp             ----T--TEEEEEEEEECSSSCCEEEE
T ss_pred             ----C--ceeeEccccccCCCCeeEEE
Confidence                1  35777788888888887753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.57  E-value=0.014  Score=54.66  Aligned_cols=195  Identities=14%  Similarity=0.145  Sum_probs=121.2

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc----EEEEEeCCCCCeEEEEEEEEECCee-EEEEeeecCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS----VLSSFKLELGETGKSMELVRVGHEQ-VLVVGTSLSS   90 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~----~i~s~~l~~~E~~~si~~~~l~~~~-~lvVGT~~~~   90 (415)
                      .....++++|+.+.++++..+       ..|++.|..+.+    ....+  .....+.+++..  .+.. +|++|+.   
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d-------~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~l~~~~~---   77 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWD-------GSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI--DNTDLQIYVGTV---   77 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETT-------SEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE--ESSSEEEEEEET---
T ss_pred             CcEEEEEEcCCCCEEEEEcCC-------CeEEEEEeCCCCccccceeee--ecCCceEEEEEC--CCCCcEEEEEcC---
Confidence            366789999998888776532       358888877666    33322  334566665432  2456 8888864   


Q ss_pred             CCCCCCCCCccccccEEEEEEE-EecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccc
Q 014962           91 GPAIMPSGEAESTKGRLIVLCI-EHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL  169 (415)
Q Consensus        91 ~~~~~~~~e~~~~~Gri~vf~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~  169 (415)
                                   .|.|.+|++ ..                                                       
T Consensus        78 -------------dg~i~~wd~~~~-------------------------------------------------------   89 (342)
T 1yfq_A           78 -------------QGEILKVDLIGS-------------------------------------------------------   89 (342)
T ss_dssp             -------------TSCEEEECSSSS-------------------------------------------------------
T ss_pred             -------------CCeEEEEEeccC-------------------------------------------------------
Confidence                         468888887 52                                                       


Q ss_pred             cccccceEEEEEEEe--cCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCC-------ccceeeeeeeccceEEEEEEEe
Q 014962          170 EETETWQLRLAYSTT--WPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDN-------PQRVRRFAVGRTRFMIMLLTAH  239 (415)
Q Consensus       170 ~~~~~~~L~l~~~~~--~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~-------~~~L~~~a~~~~~~~i~sI~~~  239 (415)
                           .++..+  ..  ..++|.+|+-..+.+|+.+ ..+.|.+|++...+       .+.+..   +.....+.++...
T Consensus        90 -----~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~  159 (342)
T 1yfq_A           90 -----PSFQAL--TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN---TKVKNKIFTMDTN  159 (342)
T ss_dssp             -----SSEEEC--BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS---SSSCCCEEEEEEC
T ss_pred             -----CceEec--cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeE---EeeCCceEEEEec
Confidence                 011111  22  4567877774435535544 44568999886300       011222   2234467788888


Q ss_pred             CCEEEEeecCCcEEEEEEEc-cCCeEEEEecCCCcceeEEEEee--eCCeEEEeCCCCcEEEEecCC
Q 014962          240 FTRIAVGDCRDGILFYSYHE-DARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       240 ~n~IlVGD~~~Sv~ll~y~~-~~~~L~~varD~~~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      .+.+++|..-..+.++..+. ....+... .......+.++.+.  +...++++..+|.+.++.++.
T Consensus       160 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~  225 (342)
T 1yfq_A          160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             CCcEEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence            88899998888887776654 22222222 22345578888887  456888889999999988755

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.55  E-value=0.024  Score=54.44  Aligned_cols=115  Identities=7%  Similarity=0.035  Sum_probs=69.7

Q ss_pred             cCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCccceeeeee---e---ccceEEEEEEEeCCEEEEeecC---CcEEE
Q 014962          185 WPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAV---G---RTRFMIMLLTAHFTRIAVGDCR---DGILF  254 (415)
Q Consensus       185 ~~g~V~al~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~---~---~~~~~i~sI~~~~n~IlVGD~~---~Sv~l  254 (415)
                      ..+.|.+++-..+.+|+++. ...|.+|++..  .+.+.....   +   ..+.........++++++|..-   ..+.+
T Consensus       185 ~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i  262 (397)
T 1sq9_A          185 PSQFATSVDISERGLIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL  262 (397)
T ss_dssp             SCCCCCEEEECTTSEEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred             CCCCceEEEECCCceEEEEeCCCcEEEEECCC--CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEE
Confidence            36678887755433355543 46699999975  233444333   2   3333344444467899998876   56655


Q ss_pred             EEEEccCCeEEEEecCC------------CcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          255 YSYHEDARKLEQIYCDP------------SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       255 l~y~~~~~~L~~varD~------------~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                        |+....+....-...            ...+++++.+- +...++.+..+|.|.++....
T Consensus       263 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          263 --YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             --EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             --EECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence              454444333332221            45678888886 445788889999999998643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.54  E-value=0.018  Score=55.13  Aligned_cols=115  Identities=9%  Similarity=0.043  Sum_probs=71.8

Q ss_pred             cCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          185 WPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      -.++|.+++-. .|++|+.+ ....|.+|++...  +.+.....+......+.....+++++.|..-..+.++..+. ..
T Consensus       183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~  259 (340)
T 1got_B          183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQ  259 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-Cc
Confidence            46788888754 35634443 3466999999752  23333233333334444445678999999888887765432 22


Q ss_pred             eEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          263 KLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       263 ~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      .+..+..+.....++++.|-.+ ..++++..+|++.++...
T Consensus       260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence            3334444444456888887644 478888999999999854

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.54  E-value=0.07  Score=51.44  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=46.7

Q ss_pred             EEEEEEEeCCEEEEeecCCc-EEEEEEEccCCeEE-EEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962          232 MIMLLTAHFTRIAVGDCRDG-ILFYSYHEDARKLE-QIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       232 ~i~sI~~~~n~IlVGD~~~S-v~ll~y~~~~~~L~-~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~  303 (415)
                      ..+.....+++++.|..-.. +.++  +...++.. .+.+......|.++.|-.+ ..++.+..+|.+.++++..
T Consensus       199 ~~~~~s~~g~~l~s~s~d~~~v~iw--d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          199 KMVRLNRKSDMVATCSQDGTIIRVF--KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEEEECTTSSEEEEEETTCSEEEEE--ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEE--ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            33444446778888888777 7555  44444443 3432336678888888644 4677888899999999754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.04  Score=59.29  Aligned_cols=197  Identities=8%  Similarity=0.067  Sum_probs=120.5

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCC--CCcEEEEEeCCCC-CeEEEEEEEEEC-C--eeEEEEeeecCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL--SGSVLSSFKLELG-ETGKSMELVRVG-H--EQVLVVGTSLSS   90 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~--t~~~i~s~~l~~~-E~~~si~~~~l~-~--~~~lvVGT~~~~   90 (415)
                      ..+.++++|+.+.++.++.+       ..|++.|..  +++.+..  +..+ ..|.++   .+. +  ..+++.|..   
T Consensus        11 ~V~~l~~s~dg~~latg~~d-------g~I~vwd~~~~~~~~~~~--l~~h~~~V~~l---~~s~~~~~~~l~s~s~---   75 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSD-------KTIKIFEVEGETHKLIDT--LTGHEGPVWRV---DWAHPKFGTILASCSY---   75 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETT-------TEEEEEEEETTEEEEEEE--ECCCSSCEEEE---EECCTTSCSEEEEEET---
T ss_pred             eeEEEEECCCCCeEEEEECC-------CcEEEEecCCCCCcccee--ccCCcCceEEE---EecCCCCCCEEEEEeC---
Confidence            55678889988877766532       358888765  3344443  3333 334443   442 2  578887754   


Q ss_pred             CCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccc
Q 014962           91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE  170 (415)
Q Consensus        91 ~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~  170 (415)
                                   .|.|.+|++..                                                        
T Consensus        76 -------------Dg~I~vwd~~~--------------------------------------------------------   86 (753)
T 3jro_A           76 -------------DGKVLIWKEEN--------------------------------------------------------   86 (753)
T ss_dssp             -------------TSCEEEEEEET--------------------------------------------------------
T ss_pred             -------------CCeEEEEECCC--------------------------------------------------------
Confidence                         47899999882                                                        


Q ss_pred             ccccceEEEE-EEEecCCceEEEeeeC---CceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-------
Q 014962          171 ETETWQLRLA-YSTTWPGMVLAICPYL---DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-------  238 (415)
Q Consensus       171 ~~~~~~L~l~-~~~~~~g~V~al~~~~---g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-------  238 (415)
                          .+.+.+ ......++|++++--.   |.+|+++. .+.|.+|++...+.  ............+.++..       
T Consensus        87 ----~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           87 ----GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             ----TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--CCCEEEECCSSCEEEEEECCCC---
T ss_pred             ----CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--cceeEeecCCCceEEEEecCccccc
Confidence                011112 2234578888888443   55355443 35699999986421  111122222334555543       


Q ss_pred             --------eCCEEEEeecCCcEEEEEEEccCCeEEEEe-cCCCcceeEEEEeeeC----CeEEEeCCCCcEEEEecCC
Q 014962          239 --------HFTRIAVGDCRDGILFYSYHEDARKLEQIY-CDPSQRLVADCVLMDV----DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       239 --------~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va-rD~~~~~vta~~~Ld~----d~~l~aD~~gNl~vl~~~~  303 (415)
                              .++++++|..-..+.++..+........+. -......++++.+-.+    ..++.+..+|.|.++....
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                    367899999989998888776544332222 2234567888888644    4688889999999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.53  E-value=0.06  Score=50.37  Aligned_cols=114  Identities=5%  Similarity=0.046  Sum_probs=71.3

Q ss_pred             CceEEEe-----eeCCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccceEEEEEEE---eCCEEEEeecCCcEEEEEE
Q 014962          187 GMVLAIC-----PYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HFTRIAVGDCRDGILFYSY  257 (415)
Q Consensus       187 g~V~al~-----~~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~---~~n~IlVGD~~~Sv~ll~y  257 (415)
                      ..|.+++     .-.+.+|+++.. ..|++|++...  + +.....+...........   .++++++|..-..+.++..
T Consensus       165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM--A-LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--E-EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--c-eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence            3666665     235664555544 67999999862  2 222233333334444444   5789999998888888776


Q ss_pred             EccC--CeEEEEecCCCcceeEEEEeeeCC--eEEEeCCCCcEEEEecCC
Q 014962          258 HEDA--RKLEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       258 ~~~~--~~L~~varD~~~~~vta~~~Ld~d--~~l~aD~~gNl~vl~~~~  303 (415)
                      +...  ..+...........++++.+-.++  .++.+..+|.|.++++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            5432  233322223456678888886544  578889999999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.52  E-value=0.0073  Score=58.07  Aligned_cols=113  Identities=7%  Similarity=0.028  Sum_probs=72.1

Q ss_pred             CCceEEEeee-CCceEEEEeC----CeEEEEeeCCCCccceeeeee-------------eccceEEEEEEEeCCEEEEee
Q 014962          186 PGMVLAICPY-LDRYFLASAG----NAFYVCGFPNDNPQRVRRFAV-------------GRTRFMIMLLTAHFTRIAVGD  247 (415)
Q Consensus       186 ~g~V~al~~~-~g~yLl~~vg----~~l~v~~~~~~~~~~L~~~a~-------------~~~~~~i~sI~~~~n~IlVGD  247 (415)
                      .++|.+++-- .|++|+++..    ..|.+|++...  +.+.....             +............+++++.|.
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence            6788888743 4664555544    47999999752  33443332             333334444445678999998


Q ss_pred             cCCcEEEEEEEccCCeEEEEecC-----CC---------------cceeEEEEeeeC-----------CeEEEeCCCCcE
Q 014962          248 CRDGILFYSYHEDARKLEQIYCD-----PS---------------QRLVADCVLMDV-----------DTAVVSDRKGSI  296 (415)
Q Consensus       248 ~~~Sv~ll~y~~~~~~L~~varD-----~~---------------~~~vta~~~Ld~-----------d~~l~aD~~gNl  296 (415)
                      .-..+.++  +....+....-..     ..               ...++++.+..+           ..++.+..+|.|
T Consensus       311 ~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          311 WDGKLRFW--DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             TTSEEEEE--ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             CCCeEEEE--EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence            77777665  4444444333330     12               667889988766           478888999999


Q ss_pred             EEEecC
Q 014962          297 AVLSCS  302 (415)
Q Consensus       297 ~vl~~~  302 (415)
                      .+++..
T Consensus       389 ~iw~~~  394 (397)
T 1sq9_A          389 RWFREA  394 (397)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            998864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.015  Score=55.05  Aligned_cols=119  Identities=7%  Similarity=-0.013  Sum_probs=75.1

Q ss_pred             EecCCceEEEeeeC--------------CceEEEEe-CCeEEEEeeCCCCcc--ceeeeeeeccceEEEEEE--Ee---C
Q 014962          183 TTWPGMVLAICPYL--------------DRYFLASA-GNAFYVCGFPNDNPQ--RVRRFAVGRTRFMIMLLT--AH---F  240 (415)
Q Consensus       183 ~~~~g~V~al~~~~--------------g~yLl~~v-g~~l~v~~~~~~~~~--~L~~~a~~~~~~~i~sI~--~~---~  240 (415)
                      ....++|++++-..              +.+|+++. ...|++|++......  .+.....+..  .+.++.  ..   +
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLR  221 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSS
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC--cEeEEEECCCCCCC
Confidence            44567788887543              66455443 456999999753211  1111111222  344554  44   6


Q ss_pred             CEEEEeecCCcEEEEEEEccCC--eEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962          241 TRIAVGDCRDGILFYSYHEDAR--KLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       241 n~IlVGD~~~Sv~ll~y~~~~~--~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++++.|+.-..+.++..+....  ....+........++++.+-.+ ..++.+..+|.|.++++..
T Consensus       222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            7899999888998887765432  3344444446677888888644 4677778899999999754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.032  Score=55.50  Aligned_cols=126  Identities=10%  Similarity=-0.002  Sum_probs=76.3

Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEEeC-CeEEEEeeCCCCcc--ceeeeeeeccceEEEEEEEe---CCEEEEeec
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLASAG-NAFYVCGFPNDNPQ--RVRRFAVGRTRFMIMLLTAH---FTRIAVGDC  248 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~vg-~~l~v~~~~~~~~~--~L~~~a~~~~~~~i~sI~~~---~n~IlVGD~  248 (415)
                      .++.+......+.|++|+-- .|++|+++-. ..+++|++......  .+.....+......+.....   +.+|+.|+.
T Consensus       139 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~  218 (450)
T 2vdu_B          139 VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR  218 (450)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET
T ss_pred             eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC
Confidence            45555555677889998744 4564555433 55888887652111  11121222333344444555   668999998


Q ss_pred             CCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          249 RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       249 ~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      -..+.++.++.  ++....-......+++++.|-|...++.+..+|.|.++.+..
T Consensus       219 d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          219 DEHIKISHYPQ--CFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             TSCEEEEEESC--TTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTT
T ss_pred             CCcEEEEECCC--CceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCC
Confidence            88888877643  333222223345678888877445788888899999998643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.51  E-value=0.0088  Score=57.64  Aligned_cols=198  Identities=11%  Similarity=0.114  Sum_probs=122.6

Q ss_pred             CccCEEEEecCC-CEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC-CCCeEEEEEEEEEC-CeeEEEEeeecCCCC
Q 014962           16 GTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE-LGETGKSMELVRVG-HEQVLVVGTSLSSGP   92 (415)
Q Consensus        16 ~tp~~I~y~~~~-~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~-~~E~~~si~~~~l~-~~~~lvVGT~~~~~~   92 (415)
                      .....++++|+. +.++.+..+       ..|++.|..+.+....+.+. ....+.+++.  .. +..+|+.|..     
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~-----  139 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKG-------GDIILWDYDVQNKTSFIQGMGPGDAITGMKF--NQFNTNQLFVSSI-----  139 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBT-------SCEEEEETTSTTCEEEECCCSTTCBEEEEEE--ETTEEEEEEEEET-----
T ss_pred             CCEEEEEECCCCCCEEEEEcCC-------CeEEEEeCCCcccceeeecCCcCCceeEEEe--CCCCCCEEEEEeC-----
Confidence            367789999997 666666543       35999999988887777763 3445555442  23 4478887744     


Q ss_pred             CCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccc
Q 014962           93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET  172 (415)
Q Consensus        93 ~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  172 (415)
                                 .|.|.+|++..                                                          
T Consensus       140 -----------d~~i~iwd~~~----------------------------------------------------------  150 (383)
T 3ei3_B          140 -----------RGATTLRDFSG----------------------------------------------------------  150 (383)
T ss_dssp             -----------TTEEEEEETTS----------------------------------------------------------
T ss_pred             -----------CCEEEEEECCC----------------------------------------------------------
Confidence                       46788887761                                                          


Q ss_pred             ccceEEEEE-EEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCC-EEEEeec
Q 014962          173 ETWQLRLAY-STTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFT-RIAVGDC  248 (415)
Q Consensus       173 ~~~~L~l~~-~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n-~IlVGD~  248 (415)
                        ..++.+. .....++|.+++-- .|++|+++. .+.|.+|++..   +.+.....+............+. +++.|..
T Consensus       151 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          151 --SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEKLHKAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             --CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEECSSSCEEEEEECSSCTTEEEEEET
T ss_pred             --CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEeccCCCcEEEEEECCCCCCEEEEEeC
Confidence              0222221 12234778888744 356455443 45689999853   33444333333333444444555 8888888


Q ss_pred             CCcEEEEEEEccC--CeEEEEecCCCcceeEEEEeee--CCeEEEeCCCCcEEEEecCC
Q 014962          249 RDGILFYSYHEDA--RKLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       249 ~~Sv~ll~y~~~~--~~L~~varD~~~~~vta~~~Ld--~d~~l~aD~~gNl~vl~~~~  303 (415)
                      -..+.++..+...  ..+...-  .....++++.+-.  ...++.+..+|.|.++....
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          226 DATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             TSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             CCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            7788776554321  3333222  2566888888864  45788889999999998653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.49  E-value=0.038  Score=52.66  Aligned_cols=173  Identities=13%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCC
Q 014962           44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS  122 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~  122 (415)
                      ..|++.|..+++.+..+...+.. +.+   +.+. +..+|+.|+.                .|.+.+|++..        
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~-~~~---~~~spdg~~l~~g~~----------------dg~v~i~~~~~--------  153 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVD-AWT---LAFSPDSQYLATGTH----------------VGKVNIFGVES--------  153 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTC-CCC---EEECTTSSEEEEECT----------------TSEEEEEETTT--------
T ss_pred             CcEEEEECCCCCEEEEEeCCCcc-EEE---EEECCCCCEEEEEcC----------------CCcEEEEEcCC--------
Confidence            46999999999888777655433 222   3343 5578888754                46788887762        


Q ss_pred             ccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeee-CCceEE
Q 014962          123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFL  201 (415)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl  201 (415)
                                                                 |        .....+  ..-...|.+++-- .|++|+
T Consensus       154 -------------------------------------------~--------~~~~~~--~~~~~~v~~~~~spdg~~la  180 (321)
T 3ow8_A          154 -------------------------------------------G--------KKEYSL--DTRGKFILSIAYSPDGKYLA  180 (321)
T ss_dssp             -------------------------------------------C--------SEEEEE--ECSSSCEEEEEECTTSSEEE
T ss_pred             -------------------------------------------C--------ceeEEe--cCCCceEEEEEECCCCCEEE
Confidence                                                       0        011111  2234567777633 467455


Q ss_pred             EE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEE
Q 014962          202 AS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCV  280 (415)
Q Consensus       202 ~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~  280 (415)
                      ++ ..+.|.+|++..  .+.+.....+..+.........+.+++.|..-..+.++..  ....+...-. ....+|+++.
T Consensus       181 sg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~~~  255 (321)
T 3ow8_A          181 SGAIDGIINIFDIAT--GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV--QHANLAGTLS-GHASWVLNVA  255 (321)
T ss_dssp             EEETTSCEEEEETTT--TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEET--TTCCEEEEEC-CCSSCEEEEE
T ss_pred             EEcCCCeEEEEECCC--CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEEC--CCcceeEEEc-CCCCceEEEE
Confidence            54 345699999975  2344443333334444445556778999988888866644  3443332222 2456788888


Q ss_pred             eee-CCeEEEeCCCCcEEEEecC
Q 014962          281 LMD-VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       281 ~Ld-~d~~l~aD~~gNl~vl~~~  302 (415)
                      |-. ...++.+..+|.+.+++..
T Consensus       256 ~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          256 FCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCC
Confidence            864 4578888999999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.48  E-value=0.08  Score=50.73  Aligned_cols=201  Identities=10%  Similarity=0.099  Sum_probs=120.5

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEee
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGT   86 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT   86 (415)
                      .++.++.+..|+.++++|+.+.+++....      ...|+++|..+++.+..+....  .+.++   .+. +..+++++.
T Consensus        24 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------d~~i~v~d~~~~~~~~~~~~~~--~v~~~---~~spdg~~l~~~~   92 (391)
T 1l0q_A           24 VTATIPVGSNPMGAVISPDGTKVYVANAH------SNDVSIIDTATNNVIATVPAGS--SPQGV---AVSPDGKQVYVTN   92 (391)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEEGG------GTEEEEEETTTTEEEEEEECSS--SEEEE---EECTTSSEEEEEE
T ss_pred             EEEEeecCCCcceEEECCCCCEEEEECCC------CCeEEEEECCCCeEEEEEECCC--Cccce---EECCCCCEEEEEE
Confidence            34567778889999999999877666422      2479999999999888777654  44443   343 456666653


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      .               ..|.|.+|++..                                                    
T Consensus        93 ~---------------~~~~v~v~d~~~----------------------------------------------------  105 (391)
T 1l0q_A           93 M---------------ASSTLSVIDTTS----------------------------------------------------  105 (391)
T ss_dssp             T---------------TTTEEEEEETTT----------------------------------------------------
T ss_pred             C---------------CCCEEEEEECCC----------------------------------------------------
Confidence            3               136788887661                                                    


Q ss_pred             ccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEE
Q 014962          167 IKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRI  243 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~I  243 (415)
                             + +.  +........+.+++-- .|++|+++.  .+.|++|++..  .+.+...... .......+...++++
T Consensus       106 -------~-~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~~~dg~~l  172 (391)
T 1l0q_A          106 -------N-TV--AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT--KAVINTVSVG-RSPKGIAVTPDGTKV  172 (391)
T ss_dssp             -------T-EE--EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred             -------C-eE--EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC--CcEEEEEecC-CCcceEEECCCCCEE
Confidence                   0 11  1112344567777633 455454443  46799999875  2333332222 222334444467788


Q ss_pred             EEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeC---CCCcEEEEecC
Q 014962          244 AVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSD---RKGSIAVLSCS  302 (415)
Q Consensus       244 lVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD---~~gNl~vl~~~  302 (415)
                      ++.....+- +..|+...++.......  ...+.++.+-.+ ..++++.   .++.|.++...
T Consensus       173 ~~~~~~~~~-v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          173 YVANFDSMS-ISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEEETTTTE-EEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EEEeCCCCE-EEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            776555432 45567766665544432  346666666533 3566655   68889888853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.46  E-value=0.1  Score=51.40  Aligned_cols=172  Identities=15%  Similarity=0.121  Sum_probs=111.0

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCc
Q 014962           44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM  123 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~  123 (415)
                      +.|++.|..+++.+..+.- ..+.+.++.   +. ..+++.|+.                .|.|.+|++...        
T Consensus       193 g~i~vwd~~~~~~~~~~~~-h~~~v~~l~---~~-~~~l~s~s~----------------dg~i~vwd~~~~--------  243 (435)
T 1p22_A          193 STVRVWDVNTGEMLNTLIH-HCEAVLHLR---FN-NGMMVTCSK----------------DRSIAVWDMASP--------  243 (435)
T ss_dssp             SCEEEEESSSCCEEEEECC-CCSCEEEEE---CC-TTEEEEEET----------------TSCEEEEECSSS--------
T ss_pred             CeEEEEECCCCcEEEEEcC-CCCcEEEEE---Ec-CCEEEEeeC----------------CCcEEEEeCCCC--------
Confidence            4699999999988877653 344555544   33 357777754                468889988720        


Q ss_pred             cccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEE
Q 014962          124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLAS  203 (415)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~  203 (415)
                                                                 .      ...+. .......++|.+++. .|.+|+++
T Consensus       244 -------------------------------------------~------~~~~~-~~~~~~~~~v~~~~~-~~~~l~s~  272 (435)
T 1p22_A          244 -------------------------------------------T------DITLR-RVLVGHRAAVNVVDF-DDKYIVSA  272 (435)
T ss_dssp             -------------------------------------------S------CCEEE-EEECCCSSCEEEEEE-ETTEEEEE
T ss_pred             -------------------------------------------C------Cceee-eEecCCCCcEEEEEe-CCCEEEEE
Confidence                                                       0      01111 111345678888876 67646655


Q ss_pred             e-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee
Q 014962          204 A-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM  282 (415)
Q Consensus       204 v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L  282 (415)
                      . .+.|.+|++...  +.+.....+  ...+.++...++++++|..-..+.++.  ...++....-+ .....++++.+ 
T Consensus       273 ~~dg~i~vwd~~~~--~~~~~~~~~--~~~v~~~~~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~~-~h~~~v~~~~~-  344 (435)
T 1p22_A          273 SGDRTIKVWNTSTC--EFVRTLNGH--KRGIACLQYRDRLVVSGSSDNTIRLWD--IECGACLRVLE-GHEELVRCIRF-  344 (435)
T ss_dssp             ETTSEEEEEETTTC--CEEEEEECC--SSCEEEEEEETTEEEEEETTSCEEEEE--TTTCCEEEEEC-CCSSCEEEEEC-
T ss_pred             eCCCeEEEEECCcC--cEEEEEcCC--CCcEEEEEeCCCEEEEEeCCCeEEEEE--CCCCCEEEEEe-CCcCcEEEEEe-
Confidence            4 456999999762  334443322  234667777899999999888886654  44443333222 24556788877 


Q ss_pred             eCCeEEEeCCCCcEEEEecCC
Q 014962          283 DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       283 d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +...++++..+|.|.++....
T Consensus       345 ~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          345 DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             CSSEEEEEETTSCEEEEEHHH
T ss_pred             cCCEEEEEeCCCcEEEEECCC
Confidence            778899999999999998643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.45  E-value=0.051  Score=50.05  Aligned_cols=206  Identities=9%  Similarity=0.084  Sum_probs=118.6

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc----EEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS----VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGP   92 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~----~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~   92 (415)
                      ..+.++++|+.+.++.+..+       ..|++.|..+..    .+..+. .....+.+++.....+..+|+.|..     
T Consensus        13 ~v~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~-----   79 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSD-------QHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASY-----   79 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETT-------SEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEET-----
T ss_pred             ceeEEEEcCCCCEEEEeeCC-------CeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcC-----
Confidence            67889999998887776533       358888876653    333333 2234455443321113578888754     


Q ss_pred             CCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccc
Q 014962           93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET  172 (415)
Q Consensus        93 ~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  172 (415)
                                 .|.|.+|++....                                          +.   +.       
T Consensus        80 -----------dg~v~vwd~~~~~------------------------------------------~~---~~-------   96 (351)
T 3f3f_A           80 -----------DKTVKLWEEDPDQ------------------------------------------EE---CS-------   96 (351)
T ss_dssp             -----------TSCEEEEEECTTS------------------------------------------CT---TS-------
T ss_pred             -----------CCeEEEEecCCCc------------------------------------------cc---cc-------
Confidence                       4789999998310                                          00   00       


Q ss_pred             ccceEEEEEEE-ecCCceEEEeeeC---CceEEEE-eCCeEEEEeeCCCCccceeeee-------------eeccceEEE
Q 014962          173 ETWQLRLAYST-TWPGMVLAICPYL---DRYFLAS-AGNAFYVCGFPNDNPQRVRRFA-------------VGRTRFMIM  234 (415)
Q Consensus       173 ~~~~L~l~~~~-~~~g~V~al~~~~---g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a-------------~~~~~~~i~  234 (415)
                       ...++.+... ...++|.+++-..   +.+|+++ ....|++|++....  .+....             .........
T Consensus        97 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (351)
T 3f3f_A           97 -GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS--DLRSWTLTSEMKVLSIPPANHLQSDFCL  173 (351)
T ss_dssp             -SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT--CTTCCEEEEEEESCSCCCSSCSCCCEEE
T ss_pred             -ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH--HhccccccccccccccccCCcccceeEE
Confidence             1233333333 4578899988543   5545544 34679999997632  121111             011112222


Q ss_pred             EEEEe---CCEEEEeecCCcEEEEEEEccCCeEEEE-ecCCCcceeEEEEeeeC-----CeEEEeCCCCcEEEEecCC
Q 014962          235 LLTAH---FTRIAVGDCRDGILFYSYHEDARKLEQI-YCDPSQRLVADCVLMDV-----DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       235 sI~~~---~n~IlVGD~~~Sv~ll~y~~~~~~L~~v-arD~~~~~vta~~~Ld~-----d~~l~aD~~gNl~vl~~~~  303 (415)
                      .....   ++++++|..-..+ ++ +....+++..+ .-......++++.+-.+     ..++.+..+|.|.+++...
T Consensus       174 ~~~p~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          174 SWCPSRFSPEKLAVSALEQAI-IY-QRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             EECCCSSSCCEEEEEETTEEE-EE-EECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             EeccCCCCCcEEEEecCCCcE-EE-EccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            33332   7789999887776 33 33334444322 22335668889888755     3688889999999998654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.068  Score=48.95  Aligned_cols=193  Identities=8%  Similarity=0.024  Sum_probs=123.2

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP   96 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~   96 (415)
                      ..+.+++ |+.+.++.+..+       ..|++.|..+.+....+... ...+.++..  ..+..++++|..         
T Consensus        20 ~v~~~~~-~~~~~l~s~~~d-------g~v~vw~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~~~~~---------   79 (313)
T 3odt_A           20 DVRDVVA-VDDSKVASVSRD-------GTVRLWSKDDQWLGTVVYTG-QGFLNSVCY--DSEKELLLFGGK---------   79 (313)
T ss_dssp             CEEEEEE-EETTEEEEEETT-------SEEEEEEESSSEEEEEEEEC-SSCEEEEEE--ETTTTEEEEEET---------
T ss_pred             CcEEEEe-cCCCEEEEEEcC-------CcEEEEECCCCEEEEEeecC-CccEEEEEE--CCCCCEEEEecC---------
Confidence            5667777 777776665422       36999998888777665543 445555433  235678888855         


Q ss_pred             CCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccce
Q 014962           97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ  176 (415)
Q Consensus        97 ~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  176 (415)
                             .|.+.+|++...                                            .    .+        ..
T Consensus        80 -------dg~i~~~~~~~~--------------------------------------------~----~~--------~~   96 (313)
T 3odt_A           80 -------DTMINGVPLFAT--------------------------------------------S----GE--------DP   96 (313)
T ss_dssp             -------TSCEEEEETTCC--------------------------------------------T----TS--------CC
T ss_pred             -------CCeEEEEEeeec--------------------------------------------C----CC--------Cc
Confidence                   467888887730                                            0    00        01


Q ss_pred             EEEEEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEE
Q 014962          177 LRLAYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILF  254 (415)
Q Consensus       177 L~l~~~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~l  254 (415)
                      +..+  ....++|.+++- .+.+|+++ ..+.|.+|+..    +.+........+........ .++++++|..-..+.+
T Consensus        97 ~~~~--~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  169 (313)
T 3odt_A           97 LYTL--IGHQGNVCSLSF-QDGVVISGSWDKTAKVWKEG----SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL  169 (313)
T ss_dssp             -CEE--CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETT----EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccch--hhcccCEEEEEe-cCCEEEEEeCCCCEEEEcCC----cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence            1111  345678888876 56545554 45568899822    33433333333333333334 6889999998888877


Q ss_pred             EEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          255 YSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       255 l~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +.    ..+....-.......++++.+..++.++.+..+|.|.++....
T Consensus       170 ~d----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          170 WQ----NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             EE----TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred             Ee----cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCc
Confidence            64    3444555555577789999998887899999999999998653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.44  E-value=0.0094  Score=60.75  Aligned_cols=204  Identities=13%  Similarity=0.199  Sum_probs=123.5

Q ss_pred             eeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEee
Q 014962            7 LNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT   86 (415)
Q Consensus         7 ~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT   86 (415)
                      |.+++-.+...|+.++++|+.+.++..        ....+++++..+++.+..+..  ...+.+++.   . ..++++|+
T Consensus       398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~-~~~l~~~~  463 (615)
T 1pgu_A          398 NGITKHEFGSQPKVASANNDGFTAVLT--------NDDDLLILQSFTGDIIKSVRL--NSPGSAVSL---S-QNYVAVGL  463 (615)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEE--------TTSEEEEEETTTCCEEEEEEC--SSCEEEEEE---C-SSEEEEEE
T ss_pred             EEcccCcccCCceEEEEcCCCCEEEEe--------CCCceEEEeccCCceeeeccc--CCCceEEEE---c-CCEEEEee
Confidence            334443444456667777766544433        123588888878888877763  344555443   3 56777774


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      .               ..|.|.+|++..                                                    
T Consensus       464 ~---------------~d~~i~~~~~~~----------------------------------------------------  476 (615)
T 1pgu_A          464 E---------------EGNTIQVFKLSD----------------------------------------------------  476 (615)
T ss_dssp             T---------------TTSCEEEEETTE----------------------------------------------------
T ss_pred             c---------------CCCeEEEEECCC----------------------------------------------------
Confidence            3               146788888772                                                    


Q ss_pred             ccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeee-eccceEEEEEEE-----
Q 014962          167 IKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAV-GRTRFMIMLLTA-----  238 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~-~~~~~~i~sI~~-----  238 (415)
                              .++....-....++|++++-- .|++|+++- ...|++|++..  .+.+..... +...........     
T Consensus       477 --------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~  546 (615)
T 1pgu_A          477 --------LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS--REVKTSRWAFRTSKINAISWKPAEKGA  546 (615)
T ss_dssp             --------EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             --------ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC--CcceeEeecCCCCceeEEEEcCccccc
Confidence                    011111112245678887733 567455553 45799999975  233333221 333444444445     


Q ss_pred             -----eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          239 -----HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       239 -----~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                           .+.++++|+.-..+.++.++.....+..+  ......++++.|..++.++.+..+|.|.++++..
T Consensus       547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred             cccccCCCEEEEEcCCCcEEEEECCCCceechhh--hcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence                 67899999999999887765432333332  3346789999998666688899999999998653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.40  E-value=0.064  Score=52.84  Aligned_cols=229  Identities=7%  Similarity=0.063  Sum_probs=130.1

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++.+..+       ..|++.|..+++.+..+.-. ...+.   .+.+. +..+|+.|..        
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D-------~~i~iwd~~~~~~~~~~~~h-~~~V~---~v~~~p~~~~l~s~s~--------  212 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSAD-------MTIKLWDFQGFECIRTMHGH-DHNVS---SVSIMPNGDHIVSASR--------  212 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SCCCEEETTSSCEEECCCCC-SSCEE---EEEECSSSSEEEEEET--------
T ss_pred             cEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCceeEEEcCC-CCCEE---EEEEeCCCCEEEEEeC--------
Confidence            55678888888776666533       34889999888877654322 12333   34443 4567777643        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              -|.|.+|++..                                                           +.
T Consensus       213 --------D~~i~~wd~~~-----------------------------------------------------------~~  225 (410)
T 1vyh_C          213 --------DKTIKMWEVQT-----------------------------------------------------------GY  225 (410)
T ss_dssp             --------TSEEEEEETTT-----------------------------------------------------------CC
T ss_pred             --------CCeEEEEECCC-----------------------------------------------------------Cc
Confidence                    46788888762                                                           01


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE---------------
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---------------  238 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~---------------  238 (415)
                      .++.+  ..-.+.|.+++.- .|.+|+.+ ..+.|.+|++...  +.......+  ...+.++..               
T Consensus       226 ~~~~~--~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~--~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          226 CVKTF--TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK--ECKAELREH--RHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             EEEEE--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             EEEEE--eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeEecCC--CceEEEEEEcCcccccchhhhccc
Confidence            12211  2345667777644 35634333 3456999999752  222221111  223333332               


Q ss_pred             -------eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCCCcCCCCC
Q 014962          239 -------HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSDRLEDNAS  310 (415)
Q Consensus       239 -------~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~~~~~~~~  310 (415)
                             .+.+++.|..-..+.++  +...++....-. ....+|+++.|-.+ ..++.+..+|.|.++.+...      
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iw--d~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~------  370 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMW--DVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK------  370 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEE--ETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS------
T ss_pred             cccccCCCCCEEEEEeCCCeEEEE--ECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------
Confidence                   15688888887777665  444443322222 24568888888544 47888899999999986431      


Q ss_pred             CCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEE
Q 014962          311 PECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVI  370 (415)
Q Consensus       311 ~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~  370 (415)
                         ++...-.-| .+.|+++...                    ...+.++-|+.+|.|-+
T Consensus       371 ---~~~~~~~~h-~~~v~~l~~~--------------------~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          371 ---RCMKTLNAH-EHFVTSLDFH--------------------KTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             ---CCCEEEECC-SSCEEEEEEC--------------------SSSSCEEEEETTSEEEE
T ss_pred             ---ceEEEEcCC-CCcEEEEEEc--------------------CCCCEEEEEeCCCcEEE
Confidence               111111222 3356665321                    12356888899998865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.39  E-value=0.0046  Score=58.30  Aligned_cols=231  Identities=10%  Similarity=0.075  Sum_probs=125.4

Q ss_pred             EEEe-CCCccCEEEEec-CCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEe--CCCCCeEEEEEEEEECCeeEEEEe
Q 014962           10 RKFH-LGGTPKKVLYHS-ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFK--LELGETGKSMELVRVGHEQVLVVG   85 (415)
Q Consensus        10 ~~i~-L~~tp~~I~y~~-~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~--l~~~E~~~si~~~~l~~~~~lvVG   85 (415)
                      +.+. -......++++| +.+.++.+..+       ..|++.|..+++.+..+.  -.....+.++..  ..+..+++.|
T Consensus       109 ~~~~~~~~~i~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~  179 (366)
T 3k26_A          109 KHYVGHGNAINELKFHPRDPNLLLSVSKD-------HALRLWNIQTDTLVAIFGGVEGHRDEVLSADY--DLLGEKIMSC  179 (366)
T ss_dssp             EEEESCCSCEEEEEECSSCTTEEEEEETT-------SCEEEEETTTTEEEEEECSTTSCSSCEEEEEE--CTTSSEEEEE
T ss_pred             eeecCCCCcEEEEEECCCCCCEEEEEeCC-------CeEEEEEeecCeEEEEecccccccCceeEEEE--CCCCCEEEEe
Confidence            3344 334677888898 66666555432       359999999988877663  123344444432  1345677777


Q ss_pred             eecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCC
Q 014962           86 TSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCD  165 (415)
Q Consensus        86 T~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  165 (415)
                      ..                .|.|.+|++.....                ..  .+       ..     ...-.|+     
T Consensus       180 ~~----------------dg~i~i~d~~~~~~----------------~~--~~-------~~-----~~~~~~~-----  208 (366)
T 3k26_A          180 GM----------------DHSLKLWRINSKRM----------------MN--AI-------KE-----SYDYNPN-----  208 (366)
T ss_dssp             ET----------------TSCEEEEESCSHHH----------------HH--HH-------HH-----HHTCCGG-----
T ss_pred             cC----------------CCCEEEEECCCCcc----------------cc--cc-------ce-----eEEecCC-----
Confidence            44                46889998873100                00  00       00     0000000     


Q ss_pred             Cccccc-cccceEEEEE-EEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCc------------cceeeeeeeccc
Q 014962          166 GIKLEE-TETWQLRLAY-STTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNP------------QRVRRFAVGRTR  230 (415)
Q Consensus       166 g~~~~~-~~~~~L~l~~-~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~------------~~L~~~a~~~~~  230 (415)
                      +..+.. +......... .....++|.+++-. |.+|+++ ..+.|.+|++.....            ..+.........
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (366)
T 3k26_A          209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD  287 (366)
T ss_dssp             GCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred             CCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence            000000 0000000011 12256788888855 6635544 456699999975321            012111112222


Q ss_pred             eEEEEEEEe--CCEEEEeecCCcEEEEEEEccC---CeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEec
Q 014962          231 FMIMLLTAH--FTRIAVGDCRDGILFYSYHEDA---RKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       231 ~~i~sI~~~--~n~IlVGD~~~Sv~ll~y~~~~---~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~  301 (415)
                      .....+...  +++|++|+.-..+.++..+...   ..+..+........++++.+-.+ ..++.+..+|.|.++++
T Consensus       288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            223333445  8899999988888887765432   13344444444678888888644 47888899999998875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.37  E-value=0.039  Score=53.44  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=61.9

Q ss_pred             CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCC-EEEEeecCCcEEEEEEEccCCeEEEEecCC
Q 014962          196 LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFT-RIAVGDCRDGILFYSYHEDARKLEQIYCDP  271 (415)
Q Consensus       196 ~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n-~IlVGD~~~Sv~ll~y~~~~~~L~~varD~  271 (415)
                      .|++|+++. ...|.+|++...  +.+.... ......+.++..  .+. ++++|..-..+.++..+.....+..+... 
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-  333 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSK--EQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-  333 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTC--CEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-
T ss_pred             CCCEEEEEcCCCeEEEEECCCC--ceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-
Confidence            466455554 345999999763  2232211 111224555554  455 89999988888776654333223333322 


Q ss_pred             CcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          272 SQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       272 ~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ....++++.+-+...++.+..+|.+.++....
T Consensus       334 ~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          334 EGTPINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             TTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             CCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence            33456666555555788889999999998654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.36  E-value=0.038  Score=53.57  Aligned_cols=114  Identities=11%  Similarity=0.151  Sum_probs=66.6

Q ss_pred             EecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCC-EEEEeecCCcEEEEEE
Q 014962          183 TTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFT-RIAVGDCRDGILFYSY  257 (415)
Q Consensus       183 ~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n-~IlVGD~~~Sv~ll~y  257 (415)
                      ..-+++|++|+-. .|++|+.+- ...|.+|++..  .+.++....+..  .|.++..  .+. +++.|..-..|.++  
T Consensus       124 ~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~~~~~~~h~~--~V~~~~~~~~~~~~l~s~s~D~~v~iw--  197 (344)
T 4gqb_B          124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVVLSSYRAHAA--QVTCVAASPHKDSVFLSCSEDNRILLW--  197 (344)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSS--CEEEEEECSSCTTEEEEEETTSCEEEE--
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCcCC--ceEEEEecCCCCCceeeeccccccccc--
Confidence            3457899999844 467455443 45699999986  233444333333  3445543  443 55667766777554  


Q ss_pred             EccCC-eEEEEecCCCcceeEEEEeee-CC-eEEEeCCCCcEEEEecC
Q 014962          258 HEDAR-KLEQIYCDPSQRLVADCVLMD-VD-TAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       258 ~~~~~-~L~~varD~~~~~vta~~~Ld-~d-~~l~aD~~gNl~vl~~~  302 (415)
                      +...+ .+..+........++++.+-. +. .++.+..+|.|.++...
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            54433 334444444455677887763 33 46678899999998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.36  E-value=0.16  Score=51.42  Aligned_cols=189  Identities=7%  Similarity=0.079  Sum_probs=115.0

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      .+..++++|+.+.++.+..+       ..|++.|. +++.+..+.-. ...+.++   .|. +..+|+.|..        
T Consensus       346 ~v~~~~~s~~g~~l~~~~~d-------g~v~~~~~-~~~~~~~~~~~-~~~v~~~---~~s~dg~~l~~~~~--------  405 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDD-------KTVKLWNR-NGQLLQTLTGH-SSSVRGV---AFSPDGQTIASASD--------  405 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SEEEEEET-TCCEEEEEECC-SSCEEEE---EECTTSSCEEEEET--------
T ss_pred             CEEEEEECCCCCEEEEEeCC-------CEEEEEcC-CCCEEEEecCC-CCCeEEE---EECCCCCEEEEEeC--------
Confidence            55678889988877766422       35888885 45666655432 2344443   443 4577777743        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|+...                                                            .
T Consensus       406 --------d~~v~~~~~~~------------------------------------------------------------~  417 (577)
T 2ymu_A          406 --------DKTVKLWNRNG------------------------------------------------------------Q  417 (577)
T ss_dssp             --------TSEEEEECTTC------------------------------------------------------------C
T ss_pred             --------CCEEEEEeCCC------------------------------------------------------------C
Confidence                    35677765320                                                            1


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEE
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~  253 (415)
                      .++.+  ....++|++++-- ++++|+.+. ...|.+|+...   +.++....+............+.+|+.|..-..+.
T Consensus       418 ~~~~~--~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~  492 (577)
T 2ymu_A          418 LLQTL--TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  492 (577)
T ss_dssp             EEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             EEEEe--cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence            22222  3346778887743 456455443 45689998753   44555444444444445555778899988877776


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      ++  +.+...+..+..  ....|+++.|-.+ ..++.++.+|.|.+++++
T Consensus       493 iw--~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          493 LW--NRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EE--ETTSCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EE--cCCCCEEEEEeC--CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            65  454444444432  3456888888644 478888999999999753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.35  E-value=0.13  Score=50.14  Aligned_cols=193  Identities=10%  Similarity=0.075  Sum_probs=113.3

Q ss_pred             cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCCC
Q 014962           18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIMP   96 (415)
Q Consensus        18 p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~~   96 (415)
                      .+.++++|+.+.++.+..+       ..|++.|..+++.+..+.-. ...+.+   +.+. +..+|+.|..         
T Consensus       126 v~~v~~s~dg~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~h-~~~v~~---~~~~p~~~~l~s~s~---------  185 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAED-------RLIRIWDIENRKIVMILQGH-EQDIYS---LDYFPSGDKLVSGSG---------  185 (393)
T ss_dssp             EEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCC-SSCEEE---EEECTTSSEEEEEET---------
T ss_pred             EEEEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEEEccC-CCCEEE---EEEcCCCCEEEEecC---------
Confidence            5678999998887766533       35999999988877654322 223443   3443 4567776643         


Q ss_pred             CCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccce
Q 014962           97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ  176 (415)
Q Consensus        97 ~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  176 (415)
                             -|.|.+|++..                                                            .+
T Consensus       186 -------d~~v~iwd~~~------------------------------------------------------------~~  198 (393)
T 1erj_A          186 -------DRTVRIWDLRT------------------------------------------------------------GQ  198 (393)
T ss_dssp             -------TSEEEEEETTT------------------------------------------------------------TE
T ss_pred             -------CCcEEEEECCC------------------------------------------------------------Ce
Confidence                   46788887762                                                            01


Q ss_pred             EEEEEEEecCCceEEEeee--CCceEEEE-eCCeEEEEeeCCCCccceeeee-------eeccceEEEEEEEeCCEEEEe
Q 014962          177 LRLAYSTTWPGMVLAICPY--LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFA-------VGRTRFMIMLLTAHFTRIAVG  246 (415)
Q Consensus       177 L~l~~~~~~~g~V~al~~~--~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a-------~~~~~~~i~sI~~~~n~IlVG  246 (415)
                      ..  ......+.|.+++-.  .|++|+++ ..+.|.+|++...  +.+....       .+......+.....+.+|+.|
T Consensus       199 ~~--~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~  274 (393)
T 1erj_A          199 CS--LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG--FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  274 (393)
T ss_dssp             EE--EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC--CEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             eE--EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence            11  122356677777754  56745444 3456999998752  2232211       112223333334467799999


Q ss_pred             ecCCcEEEEEEEccCC----------eEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecC
Q 014962          247 DCRDGILFYSYHEDAR----------KLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       247 D~~~Sv~ll~y~~~~~----------~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~  302 (415)
                      ..-..+.++..+....          ..... -.....++.++.+-. ...++.+..+|.+.++...
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVT-YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEE-EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEE-EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            9988898876653211          11111 112345677777754 4577888899999998853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.011  Score=57.96  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEE-EEC-CeeEEEEeeecCCCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELV-RVG-HEQVLVVGTSLSSGPA   93 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~-~l~-~~~~lvVGT~~~~~~~   93 (415)
                      .....++++|+.+.++.+..+       ..|++.|..+++.+.++.+.....+.+++.. .+. +..+|+.|+.      
T Consensus       215 ~~v~~~~~s~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~------  281 (437)
T 3gre_A          215 GAVSSICIDEECCVLILGTTR-------GIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS------  281 (437)
T ss_dssp             CCEEEEEECTTSCEEEEEETT-------SCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST------
T ss_pred             CceEEEEECCCCCEEEEEcCC-------CeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC------
Confidence            467788889987777766533       3599999999999998888766666666443 222 3568887744      


Q ss_pred             CCCCCCccccccEEEEEEEE
Q 014962           94 IMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        94 ~~~~~e~~~~~Gri~vf~i~  113 (415)
                                .|.|.+|++.
T Consensus       282 ----------dg~i~iwd~~  291 (437)
T 3gre_A          282 ----------KTFLTIWNFV  291 (437)
T ss_dssp             ----------TEEEEEEETT
T ss_pred             ----------CCcEEEEEcC
Confidence                      4678888776

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.29  E-value=0.06  Score=52.13  Aligned_cols=193  Identities=11%  Similarity=0.013  Sum_probs=114.1

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC--CeeEEEEeeecCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG--HEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~--~~~~lvVGT~~~~~~~~   94 (415)
                      ..+.|+++|+.+.++.+..+       ..|++.|..+++.+..+.-. ...+.+   +.+.  +..+++.|..       
T Consensus       129 ~V~~v~~spdg~~l~sgs~d-------~~i~iwd~~~~~~~~~~~~h-~~~V~~---~~~~~~~~~~l~s~s~-------  190 (344)
T 4gqb_B          129 IVSTVSVLSSGTQAVSGSKD-------ICIKVWDLAQQVVLSSYRAH-AAQVTC---VAASPHKDSVFLSCSE-------  190 (344)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCC-SSCEEE---EEECSSCTTEEEEEET-------
T ss_pred             CEEEEEECCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEcCc-CCceEE---EEecCCCCCceeeecc-------
Confidence            56788999998887766533       35999999999988765422 233443   3343  2345555532       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               -|.|.+|++..                                                   |        
T Consensus       191 ---------D~~v~iwd~~~---------------------------------------------------~--------  202 (344)
T 4gqb_B          191 ---------DNRILLWDTRC---------------------------------------------------P--------  202 (344)
T ss_dssp             ---------TSCEEEEETTS---------------------------------------------------S--------
T ss_pred             ---------ccccccccccc---------------------------------------------------c--------
Confidence                     36788887762                                                   0        


Q ss_pred             ceEEEEEEEecCCceEEEeee--CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeC-CEEEEeec
Q 014962          175 WQLRLAYSTTWPGMVLAICPY--LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHF-TRIAVGDC  248 (415)
Q Consensus       175 ~~L~l~~~~~~~g~V~al~~~--~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~-n~IlVGD~  248 (415)
                      ..+..+....-...+++++-.  .+++|+.+ ..+.|.+|++...  +.++....+...  |.+|.  ..+ .+|+.|..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--~~~~~~~~h~~~--v~~v~fsp~g~~~lasgs~  278 (344)
T 4gqb_B          203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--SCVLSSAVHSQC--VTGLVFSPHSVPFLASLSE  278 (344)
T ss_dssp             SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CCEEEECCSSC--EEEEEECSSSSCCEEEEET
T ss_pred             ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--cEEEEEcCCCCC--EEEEEEccCCCeEEEEEeC
Confidence            011111112223456666643  45634433 3467999999762  344443433333  44554  345 45777777


Q ss_pred             CCcEEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEE-EeCCCCcEEEEecCC
Q 014962          249 RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAV-VSDRKGSIAVLSCSD  303 (415)
Q Consensus       249 ~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l-~aD~~gNl~vl~~~~  303 (415)
                      -..|.+  |+...+++..+  ..+..+|+++.|- ++..++ .+-.+|.|.+..++.
T Consensus       279 D~~i~v--wd~~~~~~~~~--~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          279 DCSLAV--LDSSLSELFRS--QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             TSCEEE--ECTTCCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             CCeEEE--EECCCCcEEEE--cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            777766  46666666554  3356689999885 444554 567789999998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.29  E-value=0.049  Score=51.15  Aligned_cols=211  Identities=11%  Similarity=0.073  Sum_probs=116.9

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeec
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL   88 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~   88 (415)
                      +..++++..|..++++|+.+.+++.............|.++|..+++.+..+.....  +.++..  -.+..+++|+...
T Consensus        34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~--s~dg~~l~v~~~~  109 (353)
T 3vgz_A           34 MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK--PFGATI--NNTTQTLWFGNTV  109 (353)
T ss_dssp             EEEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC--CCSEEE--ETTTTEEEEEETT
T ss_pred             hhhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC--cceEEE--CCCCCEEEEEecC
Confidence            456788889999999999988877765432222356899999999999888876433  322211  1233555554331


Q ss_pred             CCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcc
Q 014962           89 SSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK  168 (415)
Q Consensus        89 ~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~  168 (415)
                                     .|.|.+|+...                                                   |+ 
T Consensus       110 ---------------~~~v~~~d~~~---------------------------------------------------~~-  122 (353)
T 3vgz_A          110 ---------------NSAVTAIDAKT---------------------------------------------------GE-  122 (353)
T ss_dssp             ---------------TTEEEEEETTT---------------------------------------------------CC-
T ss_pred             ---------------CCEEEEEeCCC---------------------------------------------------Ce-
Confidence                           35676666541                                                   00 


Q ss_pred             ccccccceEEEEEEEec-------CCceEEEeee-CCceEEEEe---CCeEEEEeeCCCCccceeeeeeeccceEEEEEE
Q 014962          169 LEETETWQLRLAYSTTW-------PGMVLAICPY-LDRYFLASA---GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT  237 (415)
Q Consensus       169 ~~~~~~~~L~l~~~~~~-------~g~V~al~~~-~g~yLl~~v---g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~  237 (415)
                             .+..+....-       ...+.++.-- .|++|+++.   ++.|++|+...  .+.+..............+.
T Consensus       123 -------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          123 -------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN--IKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             -------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT--TEEEEEECCCCTTCCCCEEE
T ss_pred             -------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC--CceEEEecCCCCccceEEEC
Confidence                   1111100000       0013333321 455466665   45688998874  22233222122222344556


Q ss_pred             EeCCEEEEeecCCcEEEEEEEccCCeEEEEecC---CCcceeEEEEee-eCCeEEEeCCC-CcEEEEec
Q 014962          238 AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCD---PSQRLVADCVLM-DVDTAVVSDRK-GSIAVLSC  301 (415)
Q Consensus       238 ~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD---~~~~~vta~~~L-d~d~~l~aD~~-gNl~vl~~  301 (415)
                      ..++++++++.-..+  ..|+...+++.....-   ....++.++.+- |.+.+++++.. +.|+++..
T Consensus       194 ~dg~~l~~~~~~~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  260 (353)
T 3vgz_A          194 SEGKRLYTTNADGEL--ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT  260 (353)
T ss_dssp             TTTTEEEEECTTSEE--EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred             CCCCEEEEEcCCCeE--EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            678899999875555  4577777665433222   223345556654 33455566554 77888874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.29  E-value=0.12  Score=49.47  Aligned_cols=199  Identities=11%  Similarity=0.058  Sum_probs=114.5

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS   87 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~   87 (415)
                      ++.++.+..++.++++|+.+.++++..+      ...|+++|..+++.+..+...  ..+.+   +.+. +..++++...
T Consensus        67 ~~~~~~~~~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~--~~~~~---~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A           67 IATVPAGSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG--KSPLG---LALSPDGKKLYVTNN  135 (391)
T ss_dssp             EEEEECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS--SSEEE---EEECTTSSEEEEEET
T ss_pred             EEEEECCCCccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCC--CCcce---EEECCCCCEEEEEeC
Confidence            5677888899999999999877776532      246999999999988776643  34443   3343 4455533321


Q ss_pred             cCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCc
Q 014962           88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI  167 (415)
Q Consensus        88 ~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~  167 (415)
                                     ..|.|++|++..                                                     
T Consensus       136 ---------------~~~~v~~~d~~~-----------------------------------------------------  147 (391)
T 1l0q_A          136 ---------------GDKTVSVINTVT-----------------------------------------------------  147 (391)
T ss_dssp             ---------------TTTEEEEEETTT-----------------------------------------------------
T ss_pred             ---------------CCCEEEEEECCC-----------------------------------------------------
Confidence                           146788887651                                                     


Q ss_pred             cccccccceEEEEEEEecCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEE
Q 014962          168 KLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA  244 (415)
Q Consensus       168 ~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~Il  244 (415)
                             .++  +........+.+++-- .|++|+++.  ++.|++|++...  +.+.... .........+...+++++
T Consensus       148 -------~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~-~~~~~~~~~~~~~g~~l~  215 (391)
T 1l0q_A          148 -------KAV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--SVIDTVK-VEAAPSGIAVNPEGTKAY  215 (391)
T ss_dssp             -------TEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEE-CSSEEEEEEECTTSSEEE
T ss_pred             -------CcE--EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC--eEEEEEe-cCCCccceEECCCCCEEE
Confidence                   011  1222334556666533 455464543  356999999752  2233222 122222333344577899


Q ss_pred             Eeec---CCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eE-EEeCCCCcEEEEecC
Q 014962          245 VGDC---RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TA-VVSDRKGSIAVLSCS  302 (415)
Q Consensus       245 VGD~---~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~-l~aD~~gNl~vl~~~  302 (415)
                      +++.   ...+  ..|+...++....-..  ...+.++.+-.++ .+ +.+..++.+.++...
T Consensus       216 ~~~~~~~~~~v--~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          216 VTNVDKYFNTV--SMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             EEEECSSCCEE--EEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEecCcCCCcE--EEEECCCCeEEEEEec--CCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            9884   3444  5566655544332222  2245566664333 45 455778889988854

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.23  E-value=0.13  Score=47.78  Aligned_cols=194  Identities=10%  Similarity=0.066  Sum_probs=113.8

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++.+..+       ..|++.|..+++.+..+.-.. ..+.+   +.+. +..+++.|..        
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~~~-~~v~~---~~~~~~~~~l~s~~~--------  127 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDD-------KTLKIWDVSSGKCLKTLKGHS-NYVFC---CNFNPQSNLIVSGSF--------  127 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEEEECCS-SCEEE---EEECSSSSEEEEEET--------
T ss_pred             ceEEEEEcCCCCEEEEECCC-------CEEEEEECCCCcEEEEEcCCC-CCEEE---EEEcCCCCEEEEEeC--------
Confidence            45678888887777665432       369999999888877665432 33433   3343 4577777754        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|++..                                                           +.
T Consensus       128 --------d~~i~iwd~~~-----------------------------------------------------------~~  140 (312)
T 4ery_A          128 --------DESVRIWDVKT-----------------------------------------------------------GK  140 (312)
T ss_dssp             --------TSCEEEEETTT-----------------------------------------------------------CC
T ss_pred             --------CCcEEEEECCC-----------------------------------------------------------CE
Confidence                    46788888762                                                           01


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeee-eeccceEEEEEEEeCCEEEEeecCCcE
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHFTRIAVGDCRDGI  252 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a-~~~~~~~i~sI~~~~n~IlVGD~~~Sv  252 (415)
                      .+..+  ....++|.+++-- .|++|+++ ..+.|.+|++...  +.+.... ....+.........++++++|..-..+
T Consensus       141 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
T 4ery_A          141 CLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL  216 (312)
T ss_dssp             EEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred             EEEEe--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence            12111  2235678887743 45645544 3456999999752  3333321 112233444555567899999888877


Q ss_pred             EEEEEEccCCeEE-EEecCCCcceeEEEEe-e-eCCeEEEeCCCCcEEEEecC
Q 014962          253 LFYSYHEDARKLE-QIYCDPSQRLVADCVL-M-DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       253 ~ll~y~~~~~~L~-~varD~~~~~vta~~~-L-d~d~~l~aD~~gNl~vl~~~  302 (415)
                      .++.  ....+.. .+.......++..+.+ . +...++.+..+|.|.++...
T Consensus       217 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          217 KLWD--YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             EEEE--TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred             EEEE--CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence            6654  4444433 3333333333333333 2 33467888999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.23  E-value=0.067  Score=55.75  Aligned_cols=120  Identities=9%  Similarity=0.174  Sum_probs=76.7

Q ss_pred             EEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceee--eeeeccceEEEEEEEeCCEEEEeecCCcEEEE
Q 014962          180 AYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRR--FAVGRTRFMIMLLTAHFTRIAVGDCRDGILFY  255 (415)
Q Consensus       180 ~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~--~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll  255 (415)
                      +......+.|++|+-- +|++|+.+ ...++++|+..... +.+..  ...+......+.....+.+|+.|..-..|.++
T Consensus       485 ~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~-~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW  563 (611)
T 1nr0_A          485 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW  563 (611)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC-ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence            3345567889998833 56745544 34568999987421 22221  11233344445555577899999999999887


Q ss_pred             EEEccCCeEEEEecCCC-cceeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962          256 SYHEDARKLEQIYCDPS-QRLVADCVLMDVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       256 ~y~~~~~~L~~varD~~-~~~vta~~~Ld~d~~l~aD~~gNl~vl~~  301 (415)
                      .++.....+..+ ...+ ...|+++.|..++.++.+..+|.|.+.+.
T Consensus       564 ~~~~~~~~~~~~-~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          564 NMNKPSDHPIII-KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  609 (611)
T ss_dssp             ETTCTTSCCEEE-TTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             ECCCcccccchh-hccCcccCeeEEEEcCCCEEEEecCCCCEEEEec
Confidence            765433223122 2334 57899999988877888889999988875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.14  E-value=0.26  Score=55.30  Aligned_cols=150  Identities=5%  Similarity=0.008  Sum_probs=90.5

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++.+..+       ..|++.|..+++.+..+.-. ...+.|   +.|. +..+++.|+.        
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d-------~~i~vw~~~~~~~~~~~~~h-~~~v~~---~~~s~~~~~l~s~~~--------  677 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGAD-------KTLQVFKAETGEKLLDIKAH-EDEVLC---CAFSSDDSYIATCSA--------  677 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEECCC-SSCEEE---EEECTTSSEEEEEET--------
T ss_pred             cEEEEEECCCCCEEEEEeCC-------CeEEEEECCCCCEEEEeccC-CCCEEE---EEEecCCCEEEEEeC--------
Confidence            55678899998888766532       35999999999988776522 334443   4443 5578888854        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.|.+|++..                                                   |        .
T Consensus       678 --------d~~v~vwd~~~---------------------------------------------------~--------~  690 (1249)
T 3sfz_A          678 --------DKKVKIWDSAT---------------------------------------------------G--------K  690 (1249)
T ss_dssp             --------TSEEEEEETTT---------------------------------------------------C--------C
T ss_pred             --------CCeEEEEECCC---------------------------------------------------C--------c
Confidence                    46788888762                                                   0        0


Q ss_pred             eEEEEEEEecCCceEEEeeeC---CceEEEEe--CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCC
Q 014962          176 QLRLAYSTTWPGMVLAICPYL---DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRD  250 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~~---g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~  250 (415)
                      .+..+  ....++|.+++-..   +. ++++.  ...|.+|++...  +.+.....+..+.........++++++|..-.
T Consensus       691 ~~~~~--~~~~~~v~~~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          691 LVHTY--DEHSEQVNCCHFTNKSNHL-LLATGSNDFFLKLWDLNQK--ECRNTMFGHTNSVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             EEEEE--ECCSSCEEEEEECSSSSCC-EEEEEETTSCEEEEETTSS--SEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred             eEEEE--cCCCCcEEEEEEecCCCce-EEEEEeCCCeEEEEECCCc--chhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence            12212  24567788877443   33 44333  345999999762  23333223333334444445667788877776


Q ss_pred             cEEEEEE
Q 014962          251 GILFYSY  257 (415)
Q Consensus       251 Sv~ll~y  257 (415)
                      .+.++..
T Consensus       766 ~v~vwd~  772 (1249)
T 3sfz_A          766 TLRLWDV  772 (1249)
T ss_dssp             EEEEEEG
T ss_pred             eEEEEeC
Confidence            6666543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.14  E-value=0.026  Score=54.72  Aligned_cols=193  Identities=11%  Similarity=0.043  Sum_probs=114.3

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC--CeeEEEEeeecCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG--HEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~--~~~~lvVGT~~~~~~~~   94 (415)
                      ..+.++++|+.+.++.+..+       ..|++.|..+++.+..+.-.. ..+.++   .+.  ++.+++.|..       
T Consensus       141 ~V~~v~~spdg~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~h~-~~v~~v---~~s~~~~~~~~s~~~-------  202 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKD-------FSVKVWDLSQKAVLKSYNAHS-SEVNCV---AACPGKDTIFLSCGE-------  202 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETT-------SCEEEEETTTTEEEEEECCCS-SCEEEE---EECTTCSSCEEEEET-------
T ss_pred             CEEEEEECCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEcCCC-CCEEEE---EEccCCCceeeeecc-------
Confidence            56778999998887766533       359999999999887765432 334443   343  2345555532       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               -|.|.+|++...                                                   +       
T Consensus       203 ---------dg~v~~wd~~~~---------------------------------------------------~-------  215 (357)
T 4g56_B          203 ---------DGRILLWDTRKP---------------------------------------------------K-------  215 (357)
T ss_dssp             ---------TSCEEECCTTSS---------------------------------------------------S-------
T ss_pred             ---------CCceEEEECCCC---------------------------------------------------c-------
Confidence                     367777776520                                                   0       


Q ss_pred             ceEEEEEEEecCCceEEEeee--CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeC-CEEEEeec
Q 014962          175 WQLRLAYSTTWPGMVLAICPY--LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHF-TRIAVGDC  248 (415)
Q Consensus       175 ~~L~l~~~~~~~g~V~al~~~--~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~-n~IlVGD~  248 (415)
                       .+..+......+.|++++-.  ++.+|++| ....|++|++..  .+.++........  |.+|.  ..+ .+|+.|..
T Consensus       216 -~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~--~~~~~~~~~~~~~--v~~l~~sp~~~~~lasgs~  290 (357)
T 4g56_B          216 -PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN--PDSAQTSAVHSQN--ITGLAYSYHSSPFLASISE  290 (357)
T ss_dssp             -CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--GGGCEEECCCSSC--EEEEEECSSSSCCEEEEET
T ss_pred             -eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--CcEeEEEecccee--EEEEEEcCCCCCEEEEEeC
Confidence             00000001224556666633  45634333 345699999976  2344443333333  44554  344 45667776


Q ss_pred             CCcEEEEEEEccCCeEEEEecCCCcceeEEEEee--eCCeEEEeCCCCcEEEEecCC
Q 014962          249 RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       249 ~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      -..|.+  |+.+.+++...-  .....|+++.|-  |...++.+-.+|.|.+..++.
T Consensus       291 D~~i~i--wd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          291 DCTVAV--LDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             TSCEEE--ECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CCEEEE--EECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            667755  455566554432  355678999884  556788888999999999765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.13  E-value=0.17  Score=47.27  Aligned_cols=206  Identities=10%  Similarity=0.087  Sum_probs=114.7

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe-----EEEEEEEEE-CCeeE
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET-----GKSMELVRV-GHEQV   81 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~-----~~si~~~~l-~~~~~   81 (415)
                      .++.++++..|..++++|+.+.+++....      ...|.++|..+++.+..+.+.....     ......+.+ .+..+
T Consensus        81 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  154 (353)
T 3vgz_A           81 VTQAIHNDLKPFGATINNTTQTLWFGNTV------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT  154 (353)
T ss_dssp             EEEEEEESSCCCSEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE
T ss_pred             EEEEEecCCCcceEEECCCCCEEEEEecC------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE
Confidence            46778888899999999999876666432      2479999999999999888865432     111222333 23355


Q ss_pred             EEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCC
Q 014962           82 LVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDD  161 (415)
Q Consensus        82 lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  161 (415)
                      ++++...              ..|+|++|+...                                               
T Consensus       155 l~~~~~~--------------~~~~i~~~d~~~-----------------------------------------------  173 (353)
T 3vgz_A          155 VYISGIG--------------KESVIWVVDGGN-----------------------------------------------  173 (353)
T ss_dssp             EEEEEES--------------SSCEEEEEETTT-----------------------------------------------
T ss_pred             EEEEecC--------------CCceEEEEcCCC-----------------------------------------------
Confidence            6665431              146777776551                                               


Q ss_pred             CCCCCccccccccceEEEEEEEe-cCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeec--cceEE--E
Q 014962          162 ASCDGIKLEETETWQLRLAYSTT-WPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR--TRFMI--M  234 (415)
Q Consensus       162 ~~~~g~~~~~~~~~~L~l~~~~~-~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~--~~~~i--~  234 (415)
                                   .++  +...+ ....+.+++-- .|++|+++. ++.|++|+...  .+.+.......  ....+  .
T Consensus       174 -------------~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~  236 (353)
T 3vgz_A          174 -------------IKL--KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD--NKILSRKKLLDDGKEHFFINI  236 (353)
T ss_dssp             -------------TEE--EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT--TEEEEEEECCCSSSCCCEEEE
T ss_pred             -------------Cce--EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC--CeEEEEEEcCCCCCCcccceE
Confidence                         011  11112 11223333322 455455553 45788888875  23333322211  12233  4


Q ss_pred             EEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeC-CCCcEEEEec
Q 014962          235 LLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSD-RKGSIAVLSC  301 (415)
Q Consensus       235 sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD-~~gNl~vl~~  301 (415)
                      .+...++++++++...+ .+..|+...+++...-.-..+   .++.+-. .+.+++++ .++.|.++..
T Consensus       237 ~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          237 SLDTARQRAFITDSKAA-EVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             EEETTTTEEEEEESSSS-EEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EECCCCCEEEEEeCCCC-EEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            45556889999986633 356677766655433332222   2344432 33455555 5777888874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.13  E-value=0.15  Score=50.06  Aligned_cols=193  Identities=10%  Similarity=0.067  Sum_probs=113.1

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++.+..+       ..|++.|..+++.+..+.-. ...+.++   .|. +..+|+.|..        
T Consensus       110 ~V~~~~~~p~~~~l~s~s~D-------g~i~vwd~~~~~~~~~l~~h-~~~V~~v---~~~~~~~~l~sgs~--------  170 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASED-------ATIKVWDYETGDFERTLKGH-TDSVQDI---SFDHSGKLLASCSA--------  170 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESS-------SCEEEEETTTCCCCEEECCC-SSCEEEE---EECTTSSEEEEEET--------
T ss_pred             cEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEecc-CCcEEEE---EEcCCCCEEEEEeC--------
Confidence            34578888887776665533       35999999988877665532 2344444   343 4578887755        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              -|.|.+|++..                                                   +        .
T Consensus       171 --------D~~i~iwd~~~---------------------------------------------------~--------~  183 (410)
T 1vyh_C          171 --------DMTIKLWDFQG---------------------------------------------------F--------E  183 (410)
T ss_dssp             --------TSCCCEEETTS---------------------------------------------------S--------C
T ss_pred             --------CCeEEEEeCCC---------------------------------------------------C--------c
Confidence                    35667776651                                                   0        0


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEE
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~  253 (415)
                      .++.+  ....++|.+++-. .|.+|+.| ....|.+|++...  +.+.....+............+++|+.|..-..+.
T Consensus       184 ~~~~~--~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          184 CIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             EEECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            11111  2235678888744 35545544 3456899999752  33433332332333344444677899998888887


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeee---------------------CCeEEEeCCCCcEEEEecC
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMD---------------------VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld---------------------~d~~l~aD~~gNl~vl~~~  302 (415)
                      ++..  ........-+ .....+.++.|-.                     ...++.+..+|.|.++...
T Consensus       260 vwd~--~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          260 VWVV--ATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             EEET--TTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             EEEC--CCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            6654  3333222222 2345666776643                     2357888889999998854

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.07  E-value=0.013  Score=56.74  Aligned_cols=203  Identities=12%  Similarity=0.113  Sum_probs=107.6

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEe---CCCCCeEEEEEEEEECCeeEEEEeeecCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFK---LELGETGKSMELVRVGHEQVLVVGTSLSSGPA   93 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~---l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~   93 (415)
                      ..+.++|+|++++++.+..+ ....|-..|++.+..++.....+.   ..-...+.++   .|..+..+++|..      
T Consensus        44 ~V~~v~fSpDG~~las~s~d-~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~s~d~~~l~~s~------  113 (357)
T 4g56_B           44 QIGAVRYRRDGALLLAASSL-SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDV---AWVSEKGILVASD------  113 (357)
T ss_dssp             EEEEEEECSSSCEEEEEECS-SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEE---EEETTTEEEEEET------
T ss_pred             CEEEEEECCCCCEEEEEcCC-CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEE---EEcCCCCEEEEEC------
Confidence            46789999999888766543 224567789999877654322111   1112234443   3333333444432      


Q ss_pred             CCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccc
Q 014962           94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE  173 (415)
Q Consensus        94 ~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  173 (415)
                                .|.|.+|++...                                                   +.+.   
T Consensus       114 ----------dg~v~lWd~~~~---------------------------------------------------~~~~---  129 (357)
T 4g56_B          114 ----------SGAVELWEILEK---------------------------------------------------ESLL---  129 (357)
T ss_dssp             ----------TSCEEEC-----------------------------------------------------------C---
T ss_pred             ----------CCEEEEeecccc---------------------------------------------------ceeE---
Confidence                      367888888730                                                   0000   


Q ss_pred             cceEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCC-EEEEeec
Q 014962          174 TWQLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFT-RIAVGDC  248 (415)
Q Consensus       174 ~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n-~IlVGD~  248 (415)
                      ..++   ....-.++|++|+-. .|++|+.+ ....|.+|++..  .+.+.....+..  .+.+|..  .++ +++.|..
T Consensus       130 ~~~~---~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~~~~~~~h~~--~v~~v~~s~~~~~~~~s~~~  202 (357)
T 4g56_B          130 VNKF---AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVLKSYNAHSS--EVNCVAACPGKDTIFLSCGE  202 (357)
T ss_dssp             CCCE---EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEEEEEECCCSS--CEEEEEECTTCSSCEEEEET
T ss_pred             EEee---ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCCCC--CEEEEEEccCCCceeeeecc
Confidence            0011   123446889998854 45645544 345699999975  233333222222  3555554  343 5666666


Q ss_pred             CCcEEEEEEEccCCeE-EEEecCCCcceeEEEEeeeC-C-eEEEeCCCCcEEEEecC
Q 014962          249 RDGILFYSYHEDARKL-EQIYCDPSQRLVADCVLMDV-D-TAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       249 ~~Sv~ll~y~~~~~~L-~~varD~~~~~vta~~~Ld~-d-~~l~aD~~gNl~vl~~~  302 (415)
                      -..+.++  +....+. ..+........++++.|-.+ + .+++++.+|.|.++...
T Consensus       203 dg~v~~w--d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          203 DGRILLW--DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             TSCEEEC--CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             CCceEEE--ECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence            5666554  4433322 22222334556788887633 3 56678999999999854

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.07  E-value=0.093  Score=53.18  Aligned_cols=187  Identities=7%  Similarity=0.075  Sum_probs=112.0

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~   94 (415)
                      ..++.++++|+.+.++.+..+       ..|++.|. +++.+..+.-. ...+.+   +.|. +..+|++|..       
T Consensus       386 ~~v~~~~~s~dg~~l~~~~~d-------~~v~~~~~-~~~~~~~~~~~-~~~v~~---~~~s~d~~~l~~~~~-------  446 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTIASASDD-------KTVKLWNR-NGQLLQTLTGH-SSSVWG---VAFSPDDQTIASASD-------  446 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETT-------SEEEEECT-TCCEEEEEECC-SSCEEE---EEECTTSSEEEEEET-------
T ss_pred             CCeEEEEECCCCCEEEEEeCC-------CEEEEEeC-CCCEEEEecCC-CCCeEE---EEECCCCCEEEEEcC-------
Confidence            356778888888777665422       35888884 45666655432 233443   3443 5677877644       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               .|.|.+|+...                                                            
T Consensus       447 ---------d~~v~~w~~~~------------------------------------------------------------  457 (577)
T 2ymu_A          447 ---------DKTVKLWNRNG------------------------------------------------------------  457 (577)
T ss_dssp             ---------TSEEEEEETTS------------------------------------------------------------
T ss_pred             ---------CCEEEEEECCC------------------------------------------------------------
Confidence                     35677776430                                                            


Q ss_pred             ceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcE
Q 014962          175 WQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGI  252 (415)
Q Consensus       175 ~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv  252 (415)
                      ..++.+  ....++|++++-- .|++|+.+. ...|++|+...   +.++....+......+.....+.+++.|+.-..|
T Consensus       458 ~~~~~~--~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          458 QLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             CEEEEE--ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             CEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence            122222  3456788888733 467454443 35689998643   4455544444443344444567789999888888


Q ss_pred             EEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEE
Q 014962          253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVL  299 (415)
Q Consensus       253 ~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl  299 (415)
                      .++.  .....+..+.  .....|+++.|..+ +.++.+..+|.|++.
T Consensus       533 ~lwd--~~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          533 KLWN--RNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             EEEC--TTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEe--CCCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            7764  4444444443  24567888888744 477888888988765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.06  E-value=0.15  Score=48.70  Aligned_cols=197  Identities=9%  Similarity=0.014  Sum_probs=116.9

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCC--CeEEEEEEEEEC-CeeEEEEeeecCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG--ETGKSMELVRVG-HEQVLVVGTSLSSGPA   93 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~--E~~~si~~~~l~-~~~~lvVGT~~~~~~~   93 (415)
                      ....++++|+.+.++.+..+.       .|+|.|..+...+....+..+  ..+.   .+.+. +..+|+.|..      
T Consensus        18 ~v~~l~~sp~g~~las~~~D~-------~i~iw~~~~~~~~~~~~~~~~h~~~v~---~~~~sp~g~~l~s~s~------   81 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDR-------RIRIWGTEGDSWICKSVLSEGHQRTVR---KVAWSPCGNYLASASF------   81 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTS-------CEEEEEEETTEEEEEEEECSSCSSCEE---EEEECTTSSEEEEEET------
T ss_pred             cEEEEEECCCCCEEEEEcCCC-------eEEEEEcCCCcceeeeeeccccCCcEE---EEEECCCCCEEEEEEC------
Confidence            346789999998887765433       488888777664433333222  3344   34443 4578887754      


Q ss_pred             CCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccc
Q 014962           94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE  173 (415)
Q Consensus        94 ~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  173 (415)
                                -|.+.+|++..                                                           
T Consensus        82 ----------D~~v~iw~~~~-----------------------------------------------------------   92 (345)
T 3fm0_A           82 ----------DATTCIWKKNQ-----------------------------------------------------------   92 (345)
T ss_dssp             ----------TSCEEEEEECC-----------------------------------------------------------
T ss_pred             ----------CCcEEEEEccC-----------------------------------------------------------
Confidence                      35677777762                                                           


Q ss_pred             cceEEEEEE-EecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCc-cceeeeeeeccceEEEEEEEeCCEEEEeecC
Q 014962          174 TWQLRLAYS-TTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNP-QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCR  249 (415)
Q Consensus       174 ~~~L~l~~~-~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~-~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~  249 (415)
                       ..++.+.. ..-.++|.+|+-- .|++|+.+ ....|++|++..... ..+.....+......+.....+++|+.|..-
T Consensus        93 -~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A           93 -DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             -C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred             -CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence             02222222 2346788888744 46645443 345699999975321 1122212222233334444567889999988


Q ss_pred             CcEEEEEEEccCCeEEEE-ecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEec
Q 014962          250 DGILFYSYHEDARKLEQI-YCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       250 ~Sv~ll~y~~~~~~L~~v-arD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~  301 (415)
                      ..+.++..+.  +....+ --......|+++.|-.+ ..++.+..+|.|.+.+.
T Consensus       172 ~~i~~w~~~~--~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          172 DTVKLYREEE--DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             SCEEEEEEET--TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CcEEEEEecC--CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            8898876654  322211 12234567888888644 47888899999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.01  E-value=0.28  Score=47.56  Aligned_cols=112  Identities=12%  Similarity=0.037  Sum_probs=60.1

Q ss_pred             ecCCceEEEeee-CCceEEEEe---------CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEE
Q 014962          184 TWPGMVLAICPY-LDRYFLASA---------GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       184 ~~~g~V~al~~~-~g~yLl~~v---------g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~  253 (415)
                      ...+.+.+++-- .|++|+++.         ...|++|++..  .+.+..... ........+...++++++.....+- 
T Consensus       251 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~--~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~-  326 (433)
T 3bws_A          251 DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK--EKLIDTIGP-PGNKRHIVSGNTENKIYVSDMCCSK-  326 (433)
T ss_dssp             CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT--TEEEEEEEE-EECEEEEEECSSTTEEEEEETTTTE-
T ss_pred             cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC--CcEEeeccC-CCCcceEEECCCCCEEEEEecCCCE-
Confidence            345567776643 455455554         34789999875  233333221 1122233344456788777655542 


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCC---------------CCcEEEEec
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDR---------------KGSIAVLSC  301 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~---------------~gNl~vl~~  301 (415)
                      +..|+...+++...-.  ....+.++.+-.++ .+++++.               +|.|+++..
T Consensus       327 v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          327 IEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             EEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             EEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            4556766665544332  23456666665333 4555544               357887774

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.25  Score=46.77  Aligned_cols=116  Identities=14%  Similarity=0.052  Sum_probs=71.4

Q ss_pred             cCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--e--CCEEEEeecCCcEEEEEEE
Q 014962          185 WPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--H--FTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~--~n~IlVGD~~~Sv~ll~y~  258 (415)
                      ..++|.+|+-- .|.+|+.+- ...|.+|+....+.+.+.....+..  .|.++..  .  +.+++.|..-..|.++.+.
T Consensus       152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC--cEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence            46778888743 456344433 4569999886421122322222222  3444443  3  3478888888899888876


Q ss_pred             ccCC------eEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          259 EDAR------KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       259 ~~~~------~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      ....      .....-.+....+|.++.+-++..++.+..+|.|.+++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence            4311      2222223446678999998766788888899999998853

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.98  E-value=0.26  Score=46.75  Aligned_cols=97  Identities=9%  Similarity=0.040  Sum_probs=56.1

Q ss_pred             EEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEE
Q 014962          200 FLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVAD  278 (415)
Q Consensus       200 Ll~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta  278 (415)
                      |+. +....|.+|+...   +.+.....+..+.....+...+.+|+.|..-..+.++...........+..   ...+.+
T Consensus       187 l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~---~~~v~~  260 (343)
T 2xzm_R          187 FASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA---GSTINQ  260 (343)
T ss_dssp             EEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC---SSCEEE
T ss_pred             EEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC---CCcEEE
Confidence            443 3456789999432   223332333334444445557789999998888877765322222222221   224777


Q ss_pred             EEeeeCCeEEEeCCCCcEEEEecC
Q 014962          279 CVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       279 ~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      +.|-.+..++++-.++.+.++...
T Consensus       261 v~~sp~~~~la~~~d~~v~iw~~~  284 (343)
T 2xzm_R          261 IAFNPKLQWVAVGTDQGVKIFNLM  284 (343)
T ss_dssp             EEECSSSCEEEEEESSCEEEEESS
T ss_pred             EEECCCCCEEEEECCCCEEEEEeC
Confidence            777555556655566778888754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.92  E-value=0.34  Score=47.12  Aligned_cols=199  Identities=9%  Similarity=0.072  Sum_probs=116.8

Q ss_pred             CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe--------------EEEEEEEEEC-Ce
Q 014962           15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET--------------GKSMELVRVG-HE   79 (415)
Q Consensus        15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~--------------~~si~~~~l~-~~   79 (415)
                      ......++++|+.+.++.++ +       ..+++.+..+++.+..+.-.....              -..+..+.|. +.
T Consensus        64 ~~~V~~v~fspdg~~la~g~-~-------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg  135 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGC-N-------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  135 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-B-------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             CCEEEEEEECCCCCEEEEEc-C-------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence            34678899999988777653 2       248888888888766554322110              0013445554 45


Q ss_pred             eEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCC
Q 014962           80 QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSP  159 (415)
Q Consensus        80 ~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  159 (415)
                      .+|+.|..                .|.|.+|++..                                             
T Consensus       136 ~~l~s~~~----------------d~~i~iwd~~~---------------------------------------------  154 (393)
T 1erj_A          136 KFLATGAE----------------DRLIRIWDIEN---------------------------------------------  154 (393)
T ss_dssp             SEEEEEET----------------TSCEEEEETTT---------------------------------------------
T ss_pred             CEEEEEcC----------------CCeEEEEECCC---------------------------------------------
Confidence            77777643                36778887662                                             


Q ss_pred             CCCCCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEE
Q 014962          160 DDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT  237 (415)
Q Consensus       160 ~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~  237 (415)
                                    +..+..+  ..-.++|++++-. .|.+|+.+. ...|.+|++...  +.+.... .........+.
T Consensus       155 --------------~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~  215 (393)
T 1erj_A          155 --------------RKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG--QCSLTLS-IEDGVTTVAVS  215 (393)
T ss_dssp             --------------TEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEE-CSSCEEEEEEC
T ss_pred             --------------CcEEEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC--eeEEEEE-cCCCcEEEEEE
Confidence                          0012112  2346788888754 355455544 456899999752  2222212 22233333444


Q ss_pred             E-eCCEEEEeecCCcEEEEEEEccCCeEEEEec------CCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962          238 A-HFTRIAVGDCRDGILFYSYHEDARKLEQIYC------DPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       238 ~-~~n~IlVGD~~~Sv~ll~y~~~~~~L~~var------D~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~  303 (415)
                      . .+++|++|..-..+.++  +...+.+...-.      .....+++++.|-.+ ..++.+..+|.|.++.+..
T Consensus       216 ~~~~~~l~~~s~d~~v~iw--d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVW--DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             STTCCEEEEEETTSCEEEE--ETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCEEEEEcCCCcEEEE--ECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            3 56789999888888665  444444332221      234567888888644 4788889999999998643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.92  E-value=0.33  Score=46.95  Aligned_cols=175  Identities=11%  Similarity=0.060  Sum_probs=90.1

Q ss_pred             EEecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEE--EEeCCEEEEeecC--CcEEEEE
Q 014962          182 STTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL--TAHFTRIAVGDCR--DGILFYS  256 (415)
Q Consensus       182 ~~~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI--~~~~n~IlVGD~~--~Sv~ll~  256 (415)
                      ..+..+.|++|+-- .|++|+.+....+.+|.....  +.+...........+.++  ...+.+++.+-.-  ..+.+..
T Consensus       172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTG--SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTC--CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             EeCCCCceEEEEEccCCceEEeccceeEEEEEeccC--cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            34467889998732 577566666777888877652  222221122222334444  4566677776543  3456666


Q ss_pred             EEccCCeEEE--E-ecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEe
Q 014962          257 YHEDARKLEQ--I-YCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRK  332 (415)
Q Consensus       257 y~~~~~~L~~--v-arD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~  332 (415)
                      |+........  . .-.....+|+++.|-.+ ..++.+..+|.|.++....       . +.+...-.-| ...|+++. 
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-------~-~~~~~~~~gH-~~~V~~v~-  319 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-------L-SMSKIFKQAH-SFAITEVT-  319 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-------T-EEEEEETTSS-SSCEEEEE-
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-------C-cEEEEecCcc-cCCEEEEE-
Confidence            6654432211  1 11223456888887533 4677788899999998532       1 1222211223 34567663 


Q ss_pred             eceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEecC------hHHHHHHHHHHHH
Q 014962          333 GSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPIS------SEEYELLEAVQAR  388 (415)
Q Consensus       333 gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl~------~~~~~~L~~LQ~~  388 (415)
                        +.   |              ....|+-|+.+|+|=+. .|+      ....+.|.+||.+
T Consensus       320 --fS---p--------------dg~~laS~S~D~tvrvw-~ip~~~~~~~s~~~~l~kl~~~  361 (365)
T 4h5i_A          320 --IS---P--------------DSTYVASVSAANTIHII-KLPLNYANYTSMKQKISKLEHH  361 (365)
T ss_dssp             --EC---T--------------TSCEEEEEETTSEEEEE-ECCTTTTC--------------
T ss_pred             --EC---C--------------CCCEEEEEeCCCeEEEE-EcCCCCcCccCccccceeeecc
Confidence              21   2              23568888999999665 342      2344566666654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.24  Score=45.23  Aligned_cols=110  Identities=8%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             ecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCc-cceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962          184 TWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNP-QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       184 ~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~-~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      ..+++|.+++-. .|++|+++ ....+.+|++..... +.+....  .....+.++...++++++|..-..+.++.   .
T Consensus        57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~  131 (313)
T 3odt_A           57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI--GHQGNVCSLSFQDGVVISGSWDKTAKVWK---E  131 (313)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEE---T
T ss_pred             cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh--hcccCEEEEEecCCEEEEEeCCCCEEEEc---C
Confidence            347889998854 45645544 344588998875321 1222222  22335677777899999999988887765   2


Q ss_pred             CCeEEEEecCCCcceeEEEEeee--CCeEEEeCCCCcEEEEe
Q 014962          261 ARKLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       261 ~~~L~~varD~~~~~vta~~~Ld--~d~~l~aD~~gNl~vl~  300 (415)
                      ...+..+.  .....+.++.+..  .+.++.+..+|.|.++.
T Consensus       132 ~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A          132 GSLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             TEEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CcEEEecc--cCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            22223332  2455677777764  56889999999999987

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.094  Score=52.00  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             cCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeee-----------------------ccceEEEEEEE--
Q 014962          185 WPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVG-----------------------RTRFMIMLLTA--  238 (415)
Q Consensus       185 ~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~-----------------------~~~~~i~sI~~--  238 (415)
                      -.++|.+++--.|++|+.+ ..+.|.+|++...  +.+......                       .....+.+|..  
T Consensus       240 h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          240 HKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CSSCEEEEEECSTTEEEEEESSSEEEEEETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCceEEEEECCCCEEEEEeCCCeEEEEECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            4578888873367745544 3456999999752  333332211                       11223555554  


Q ss_pred             eCCEEEEee-cCCcEEEEEE-EccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCC
Q 014962          239 HFTRIAVGD-CRDGILFYSY-HEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR  292 (415)
Q Consensus       239 ~~n~IlVGD-~~~Sv~ll~y-~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~  292 (415)
                      .+++|+++. --..+.++.. +...++|..+..=.....+.++.+..+..++..+.
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence            467888887 6778888887 34444444443322336677888766555666655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.89  E-value=0.38  Score=47.23  Aligned_cols=111  Identities=11%  Similarity=0.014  Sum_probs=73.8

Q ss_pred             ecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          184 TWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       184 ~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      ...++|.+++.-.+. |+++ ..+.|.+|++...  +.+.....+  ...+.++...++++++|+.-..+.++  +....
T Consensus       197 ~h~~~v~~~~~~~~~-l~s~s~dg~i~~wd~~~~--~~~~~~~~~--~~~v~~~~~~~~~l~~~~~dg~i~iw--d~~~~  269 (445)
T 2ovr_B          197 GHTSTVRCMHLHEKR-VVSGSRDATLRVWDIETG--QCLHVLMGH--VAAVRCVQYDGRRVVSGAYDFMVKVW--DPETE  269 (445)
T ss_dssp             CCSSCEEEEEEETTE-EEEEETTSEEEEEESSSC--CEEEEEECC--SSCEEEEEECSSCEEEEETTSCEEEE--EGGGT
T ss_pred             CCCCcEEEEEecCCE-EEEEeCCCEEEEEECCCC--cEEEEEcCC--cccEEEEEECCCEEEEEcCCCEEEEE--ECCCC
Confidence            346778888764444 5554 4567999999862  334332222  23466666688999999998888665  44444


Q ss_pred             eEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       263 ~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +....-. .....++++.+ +...++.+..+|.|.++....
T Consensus       270 ~~~~~~~-~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~  308 (445)
T 2ovr_B          270 TCLHTLQ-GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVET  308 (445)
T ss_dssp             EEEEEEC-CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTT
T ss_pred             cEeEEec-CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCC
Confidence            4333222 34557788888 777899999999999998643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.89  E-value=0.064  Score=51.37  Aligned_cols=49  Identities=10%  Similarity=0.137  Sum_probs=37.5

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCC
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL   64 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~   64 (415)
                      +++|+....|+.|+++++.++|+...       +...|.++|+.+++++..+.+..
T Consensus        77 ~~~i~~~~~p~~i~~~~~g~lyv~~~-------~~~~v~~iD~~t~~~~~~i~~g~  125 (328)
T 3dsm_A           77 VGRITGFTSPRYIHFLSDEKAYVTQI-------WDYRIFIINPKTYEITGYIECPD  125 (328)
T ss_dssp             EEEEECCSSEEEEEEEETTEEEEEEB-------SCSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEcCCCCCCcEEEEeCCCeEEEEEC-------CCCeEEEEECCCCeEEEEEEcCC
Confidence            36788888999999988875544321       24579999999999988888755

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.87  E-value=0.2  Score=48.59  Aligned_cols=117  Identities=8%  Similarity=0.006  Sum_probs=67.8

Q ss_pred             ecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeee-----eeeccceEEEEEE--EeC-CEEEEeecCCcEEE
Q 014962          184 TWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRF-----AVGRTRFMIMLLT--AHF-TRIAVGDCRDGILF  254 (415)
Q Consensus       184 ~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~-----a~~~~~~~i~sI~--~~~-n~IlVGD~~~Sv~l  254 (415)
                      ...++|++++-- .|++|+.+-...|.+|++.... +.+...     .+......+.++.  ..+ ++++.|..-..+.+
T Consensus       175 ~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          175 AHTYHINSISINSDYETYLSADDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            356788888743 4665777766679999998421 222211     0111122345554  455 78999998888877


Q ss_pred             EEEEccCC---eEEEEecCCCc----------ceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962          255 YSYHEDAR---KLEQIYCDPSQ----------RLVADCVLMDVD-TAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       255 l~y~~~~~---~L~~varD~~~----------~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~  302 (415)
                      +..+....   .+..+.....+          ..++++.|-.++ .+++++. |.|.++...
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            65443221   02333222111          278888886544 6666677 999999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.81  E-value=0.08  Score=50.42  Aligned_cols=73  Identities=14%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             CccCEEEEec-CCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCC
Q 014962           16 GTPKKVLYHS-ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPA   93 (415)
Q Consensus        16 ~tp~~I~y~~-~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~   93 (415)
                      .....++++| ..+.++.+..+       ..|++.|..+++.+..+.+  .+.+.++...... +..++++|+.      
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------  164 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFD-------KTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTR------  164 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETT-------SEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEES------
T ss_pred             CcEEEEEEccCCCcEEEEEeCC-------CeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcC------
Confidence            4667888888 45555554322       4699999999998887774  4455555544333 3458888855      


Q ss_pred             CCCCCCccccccEEEEEEEE
Q 014962           94 IMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        94 ~~~~~e~~~~~Gri~vf~i~  113 (415)
                                .|.|.+|++.
T Consensus       165 ----------~~~v~~~d~~  174 (408)
T 4a11_B          165 ----------GPKVQLCDLK  174 (408)
T ss_dssp             ----------SSSEEEEESS
T ss_pred             ----------CCeEEEEeCC
Confidence                      4688898887

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.78  E-value=0.19  Score=53.32  Aligned_cols=116  Identities=12%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             ecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962          184 TWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       184 ~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      ...++|.+++-- .|++|+++- ...|.+|++...  +.+.....+............+.+|++|+.-..+.++.++...
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~  130 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW  130 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence            457889888844 456455543 356999999752  3344333333333444444567799999988888776654322


Q ss_pred             CeEEEEecCCCcceeEEEEee--eCCeEEEeCCCCcEEEEecCC
Q 014962          262 RKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       262 ~~L~~varD~~~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~~  303 (415)
                       .+...-. .....++++.+-  +...++.+..+|.|.++....
T Consensus       131 -~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          131 -ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             -EEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             -eEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence             3332222 244568888886  345788899999999998643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.78  E-value=0.31  Score=44.60  Aligned_cols=112  Identities=11%  Similarity=0.140  Sum_probs=66.3

Q ss_pred             ceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEe-CCEEEEeecCCcEEEEEEEccCCe
Q 014962          188 MVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       188 ~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~-~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      .+.+|+-- +|+ |+++-  ++.|++|+...   +.+...........+..|... .+.|+|+|....=.+..|+.+...
T Consensus       165 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~  240 (286)
T 1q7f_A          165 FPNGVVVNDKQE-IFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL  240 (286)
T ss_dssp             SEEEEEECSSSE-EEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE
T ss_pred             CcEEEEECCCCC-EEEEECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE
Confidence            35666633 466 66653  67899998753   334332221101234555543 346888887653234667777666


Q ss_pred             EEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       264 L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +..+........+.++.+-.++.++++|.++.|.++++..
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          241 ISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             EEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            6666655444445566654455777778888899998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.77  E-value=0.37  Score=45.73  Aligned_cols=94  Identities=14%  Similarity=0.054  Sum_probs=59.9

Q ss_pred             eEEEe-eeCCceEEEEe-C--CeEEEEeeCCCCccceeeeeeecc--ceEEEEEEEeCCEEEEeec-CCcEEEEEEEccC
Q 014962          189 VLAIC-PYLDRYFLASA-G--NAFYVCGFPNDNPQRVRRFAVGRT--RFMIMLLTAHFTRIAVGDC-RDGILFYSYHEDA  261 (415)
Q Consensus       189 V~al~-~~~g~yLl~~v-g--~~l~v~~~~~~~~~~L~~~a~~~~--~~~i~sI~~~~n~IlVGD~-~~Sv~ll~y~~~~  261 (415)
                      +.+|+ .=.|++|+++. +  +.|.+|++...+ ..++.......  ...-..+...+++|++++. -..+.+++++.+.
T Consensus       261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~-g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~  339 (361)
T 3scy_A          261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETN-GTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT  339 (361)
T ss_dssp             EEEEEECTTSSEEEEEECSSSCEEEEEEECTTT-CCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred             cccEEECCCCCEEEEECCCCCCEEEEEEEcCCC-CcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence            34444 22577665654 3  679999997321 12333222221  2233445567889999984 5789999999989


Q ss_pred             CeEEEEecCCCcceeEEEEeee
Q 014962          262 RKLEQIYCDPSQRLVADCVLMD  283 (415)
Q Consensus       262 ~~L~~varD~~~~~vta~~~Ld  283 (415)
                      +++..+.....-..++|+.|+|
T Consensus       340 g~~~~~~~~~~~~~p~~v~~~~  361 (361)
T 3scy_A          340 GLLTDIKKDIKVDKPVCLKFVD  361 (361)
T ss_dssp             CCEEECSCCEECSSEEEEEEEC
T ss_pred             CcEeecceeeeCCCCeEEEEcC
Confidence            9999888765555678888764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.77  E-value=0.057  Score=52.48  Aligned_cols=200  Identities=9%  Similarity=0.039  Sum_probs=113.2

Q ss_pred             CccCEEEEecCCC-EEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEe-CCCCCeEEEEEEEEECCeeEEEEeeecCCCCC
Q 014962           16 GTPKKVLYHSESR-LLIVMRTELNNDTCSSDICCVDPLSGSVLSSFK-LELGETGKSMELVRVGHEQVLVVGTSLSSGPA   93 (415)
Q Consensus        16 ~tp~~I~y~~~~~-~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~-l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~   93 (415)
                      .....++++|+.+ .++.+..+       ..|++.|..+++.+..+. -.....+.++..-  .+..+|++|..      
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~------  196 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCD-------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS--RDGALICTSCR------  196 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETT-------SCEEEEETTTTEEEEEECTTTCCSCEEEEEEC--TTSSCEEEEET------
T ss_pred             CeEEEEEECcCCCCEEEEEcCC-------CEEEEEECCCCCccEEEecCCCCCceEEEEEC--CCCCEEEEEec------
Confidence            3667788999874 55554422       359999999998887764 2234455544321  25577777753      


Q ss_pred             CCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccc
Q 014962           94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE  173 (415)
Q Consensus        94 ~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  173 (415)
                                .|.|.+|++..                                                           
T Consensus       197 ----------d~~i~iwd~~~-----------------------------------------------------------  207 (402)
T 2aq5_A          197 ----------DKRVRVIEPRK-----------------------------------------------------------  207 (402)
T ss_dssp             ----------TSEEEEEETTT-----------------------------------------------------------
T ss_pred             ----------CCcEEEEeCCC-----------------------------------------------------------
Confidence                      47888888762                                                           


Q ss_pred             cceEEEEEEEecCCc-eEEEeee-CCceEEEE----eCCeEEEEeeCCCCccceeeee-eeccceEEEEEEEeCCEEEE-
Q 014962          174 TWQLRLAYSTTWPGM-VLAICPY-LDRYFLAS----AGNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHFTRIAV-  245 (415)
Q Consensus       174 ~~~L~l~~~~~~~g~-V~al~~~-~g~yLl~~----vg~~l~v~~~~~~~~~~L~~~a-~~~~~~~i~sI~~~~n~IlV-  245 (415)
                       .+..........+. +.+++-. +|++|+++    ....|.+|++.... ..+.... ..............++++++ 
T Consensus       208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          208 -GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE-EPLSLQELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             -TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS-SCSEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred             -CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc-CCceEEeccCCCceeEEEEcCCCCEEEEE
Confidence             01111111122333 5555533 46634444    35669999997632 1122211 12223344444556777764 


Q ss_pred             eecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          246 GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       246 GD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      |..-..+.++.++.....+..+..-.....+.++.|..+..++++ .++.+.+++..
T Consensus       286 g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~  341 (402)
T 2aq5_A          286 GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLH  341 (402)
T ss_dssp             ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEE
T ss_pred             EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcC
Confidence            556677888877654432555544445677888888766655444 23466666654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.75  E-value=0.086  Score=50.79  Aligned_cols=190  Identities=12%  Similarity=0.090  Sum_probs=110.3

Q ss_pred             CEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCC
Q 014962           19 KKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSG   98 (415)
Q Consensus        19 ~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~   98 (415)
                      ..+.++|+.+.++.+..       -..|++.|..+++.+..+.-.. ..+.++....-.+..+|+.|..           
T Consensus       158 ~~~~~~~~~~~l~t~s~-------D~~v~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~-----------  218 (354)
T 2pbi_B          158 SACSFTNSDMQILTASG-------DGTCALWDVESGQLLQSFHGHG-ADVLCLDLAPSETGNTFVSGGC-----------  218 (354)
T ss_dssp             EEEEECSSSSEEEEEET-------TSEEEEEETTTCCEEEEEECCS-SCEEEEEECCCSSCCEEEEEET-----------
T ss_pred             EEEEEeCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEEeCCCCCEEEEEeC-----------
Confidence            34556666555544432       2469999999998887765332 3344443221123367777744           


Q ss_pred             CccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEE
Q 014962           99 EAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLR  178 (415)
Q Consensus        99 e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~  178 (415)
                           -|.|.+|++..                                                   |        ..++
T Consensus       219 -----Dg~v~~wd~~~---------------------------------------------------~--------~~~~  234 (354)
T 2pbi_B          219 -----DKKAMVWDMRS---------------------------------------------------G--------QCVQ  234 (354)
T ss_dssp             -----TSCEEEEETTT---------------------------------------------------C--------CEEE
T ss_pred             -----CCeEEEEECCC---------------------------------------------------C--------cEEE
Confidence                 46788888762                                                   0        0111


Q ss_pred             EEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEE--EEeCCEEEEeecCCcEEE
Q 014962          179 LAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL--TAHFTRIAVGDCRDGILF  254 (415)
Q Consensus       179 l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI--~~~~n~IlVGD~~~Sv~l  254 (415)
                      .+  ..-.++|.+++-. .|.+|+.+ ....|.+|++...  +.+...........+.++  ...+.++++|..-..+.+
T Consensus       235 ~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v  310 (354)
T 2pbi_B          235 AF--ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD--REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV  310 (354)
T ss_dssp             EE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             Ee--cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence            11  2345778888754 35534443 3456999999763  223222211111223344  446789999998888876


Q ss_pred             EEEEccCC-eEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEE
Q 014962          255 YSYHEDAR-KLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVL  299 (415)
Q Consensus       255 l~y~~~~~-~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl  299 (415)
                      +..  ..+ .+..+.  ....+|+++.|-. ...++.+..+|.+.++
T Consensus       311 wd~--~~~~~~~~l~--~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          311 WDV--LKGSRVSILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             EET--TTCSEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EEC--CCCceEEEEE--CCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            543  333 333332  3456788888864 4478888999988775

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.72  E-value=0.22  Score=46.49  Aligned_cols=115  Identities=4%  Similarity=-0.036  Sum_probs=73.5

Q ss_pred             cCCceEEEeeeC-----CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEE
Q 014962          185 WPGMVLAICPYL-----DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSY  257 (415)
Q Consensus       185 ~~g~V~al~~~~-----g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y  257 (415)
                      ..+.|++++-..     |.+|+++ ..+.|.+|++..  .+.+.....+..+........ .++++++|..-..+.++. 
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd-  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN-  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE-
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE-
Confidence            457888888443     4535544 445699999975  233444332333333333334 568999999888886664 


Q ss_pred             EccCCeEEEEec--CCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          258 HEDARKLEQIYC--DPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       258 ~~~~~~L~~var--D~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                       ...++....-.  ......++++.+-. ...++.+..+|.|.++....
T Consensus       145 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          145 -IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             -TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             -eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence             44444444432  45667888888864 45788889999999998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.66  E-value=0.51  Score=46.32  Aligned_cols=167  Identities=9%  Similarity=0.011  Sum_probs=101.3

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCc
Q 014962           44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM  123 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~  123 (415)
                      ..|++.|..+++.+..+.-. ...+.++..  -.+..++++|+.                .|.|.+|++..         
T Consensus       290 ~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~sg~~----------------dg~i~vwd~~~---------  341 (464)
T 3v7d_B          290 NTLIVWDVAQMKCLYILSGH-TDRIYSTIY--DHERKRCISASM----------------DTTIRIWDLEN---------  341 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCC-SSCEEEEEE--ETTTTEEEEEET----------------TSCEEEEETTT---------
T ss_pred             CeEEEEECCCCcEEEEecCC-CCCEEEEEE--cCCCCEEEEEeC----------------CCcEEEEECCC---------
Confidence            45999999999888766432 334444432  234578887754                46788888762         


Q ss_pred             cccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEE
Q 014962          124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLAS  203 (415)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~  203 (415)
                                                                |        ..+..+  ..-.++|.+++- .+.+|+.+
T Consensus       342 ------------------------------------------~--------~~~~~~--~~h~~~v~~~~~-~~~~l~s~  368 (464)
T 3v7d_B          342 ------------------------------------------G--------ELMYTL--QGHTALVGLLRL-SDKFLVSA  368 (464)
T ss_dssp             ------------------------------------------T--------EEEEEE--CCCSSCEEEEEE-CSSEEEEE
T ss_pred             ------------------------------------------C--------cEEEEE--eCCCCcEEEEEE-cCCEEEEE
Confidence                                                      0        011111  234677888774 46646654


Q ss_pred             e-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee
Q 014962          204 A-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM  282 (415)
Q Consensus       204 v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L  282 (415)
                      . .+.|.+|++...  +.... ........+..+...++++++|. -..+  .-|+...+++...-.-.....+.++.| 
T Consensus       369 s~dg~v~vwd~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i--~iwd~~~g~~~~~~~~~~~~~v~~v~~-  441 (464)
T 3v7d_B          369 AADGSIRGWDANDY--SRKFS-YHHTNLSAITTFYVSDNILVSGS-ENQF--NIYNLRSGKLVHANILKDADQIWSVNF-  441 (464)
T ss_dssp             ETTSEEEEEETTTC--CEEEE-EECTTCCCEEEEEECSSEEEEEE-TTEE--EEEETTTCCEEESCTTTTCSEEEEEEE-
T ss_pred             eCCCcEEEEECCCC--ceeee-ecCCCCccEEEEEeCCCEEEEec-CCeE--EEEECCCCcEEehhhccCCCcEEEEEe-
Confidence            4 457999999863  22222 22333456777888899999988 4444  556666676665322334667888888 


Q ss_pred             eCC-eEEEeCCCCcEEE
Q 014962          283 DVD-TAVVSDRKGSIAV  298 (415)
Q Consensus       283 d~d-~~l~aD~~gNl~v  298 (415)
                      +++ .+++++.+|..++
T Consensus       442 ~~~~l~~~~~~~g~~~i  458 (464)
T 3v7d_B          442 KGKTLVAAVEKDGQSFL  458 (464)
T ss_dssp             ETTEEEEEEEETTEEEE
T ss_pred             cCCEEEEEEEeCCeEEE
Confidence            455 4455566665443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.66  E-value=0.48  Score=45.10  Aligned_cols=251  Identities=10%  Similarity=0.030  Sum_probs=137.6

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCC-eEEEEEEEEEC-CeeEEEEeeecCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE-TGKSMELVRVG-HEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E-~~~si~~~~l~-~~~~lvVGT~~~~~~~~   94 (415)
                      ..+.++++|+.+.++.+..+.       .+++.|..+.+......|..++ .+.+   +.+. +..+|+.|..       
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~-------~v~iw~~~~~~~~~~~~~~~h~~~v~~---v~~sp~~~~l~s~s~-------  125 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDA-------TTCIWKKNQDDFECVTTLEGHENEVKS---VAWAPSGNLLATCSR-------  125 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-------CEEEEEECCC-EEEEEEECCCSSCEEE---EEECTTSSEEEEEET-------
T ss_pred             cEEEEEECCCCCEEEEEECCC-------cEEEEEccCCCeEEEEEccCCCCCceE---EEEeCCCCEEEEEEC-------
Confidence            567889999988877665332       4777776555432223344332 3443   3443 4578887744       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               -|.|.+|++...                                                           
T Consensus       126 ---------D~~v~iwd~~~~-----------------------------------------------------------  137 (345)
T 3fm0_A          126 ---------DKSVWVWEVDEE-----------------------------------------------------------  137 (345)
T ss_dssp             ---------TSCEEEEEECTT-----------------------------------------------------------
T ss_pred             ---------CCeEEEEECCCC-----------------------------------------------------------
Confidence                     467889988720                                                           


Q ss_pred             ceEEEEEE-EecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCc
Q 014962          175 WQLRLAYS-TTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG  251 (415)
Q Consensus       175 ~~L~l~~~-~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~S  251 (415)
                      ...+.+.. ....+.|.+++-- .|.+|+.+. ...|.+|+........+.....+......+.....+++++.|..-..
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            01222221 2345678887743 355455443 45689999875211111121222223333344456789999999999


Q ss_pred             EEEEEEEccCC-------------eEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCCCcCCCCCCCCccce
Q 014962          252 ILFYSYHEDAR-------------KLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTP  317 (415)
Q Consensus       252 v~ll~y~~~~~-------------~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~  317 (415)
                      |.++.......             +............+.++.+-. ...++.+..++.+.++........ ..  ..+..
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~-~~--~~~~~  294 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP-QQ--PTFSL  294 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT-TS--CCEEE
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc-ce--eeEEE
Confidence            98886532211             122222334566788888754 347888888999999986542110 11  12222


Q ss_pred             eeeeec--CccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEec
Q 014962          318 NCAYHM--GEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPI  374 (415)
Q Consensus       318 ~~~fhl--Gd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl  374 (415)
                      ..+.+-  .+.|+++...      |             .....++-|+.+|.|-+--.-
T Consensus       295 ~~~~~~~h~~~V~~v~~~------p-------------~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          295 TAHLHQAHSQDVNCVAWN------P-------------KEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EEEETTSSSSCEEEEEEC------S-------------SSTTEEEEEETTSCEEEEEEC
T ss_pred             EeeecccccCcEeEeEEe------C-------------CCceEEEEcCCCCcEEEEEec
Confidence            223222  3456665321      1             122357778889998766544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.62  E-value=0.59  Score=45.67  Aligned_cols=178  Identities=12%  Similarity=0.087  Sum_probs=106.8

Q ss_pred             eeEEEEeCCCCcEEEEEeCCCC-CeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCC
Q 014962           44 SDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS  122 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~~-E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~  122 (415)
                      .+|+|-|..|++++..+++..+ ..|+|++.-  .+..+|++|+.                -|.|.+|++..        
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs--pdg~~lasgs~----------------Dg~v~iWd~~~--------  178 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWI--KEGNYLAVGTS----------------SAEVQLWDVQQ--------  178 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEEC--TTSSEEEEEET----------------TSCEEEEETTT--------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEEC--CCCCEEEEEEC----------------CCeEEEEEcCC--------
Confidence            4699999999999998888754 566665431  35589999966                46788888762        


Q ss_pred             ccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEE
Q 014962          123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLA  202 (415)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~  202 (415)
                                                                         +..+...  ....+.|.++. +++.+|+.
T Consensus       179 ---------------------------------------------------~~~~~~~--~~h~~~v~~~s-~~~~~l~s  204 (420)
T 4gga_A          179 ---------------------------------------------------QKRLRNM--TSHSARVGSLS-WNSYILSS  204 (420)
T ss_dssp             ---------------------------------------------------TEEEEEE--CCCSSCEEEEE-EETTEEEE
T ss_pred             ---------------------------------------------------CcEEEEE--eCCCCceEEEe-eCCCEEEE
Confidence                                                               0122211  23456677776 45763444


Q ss_pred             Ee-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeE-EEEecCCCcceeEEEE
Q 014962          203 SA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKL-EQIYCDPSQRLVADCV  280 (415)
Q Consensus       203 ~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L-~~varD~~~~~vta~~  280 (415)
                      +. ...+.+|++.... ..+.....+............+++++.|..-..+.++......... ...........|.++.
T Consensus       205 gs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~  283 (420)
T 4gga_A          205 GSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA  283 (420)
T ss_dssp             EETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE
T ss_pred             EeCCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeee
Confidence            33 3447778776532 2233333344444555555677888888888888776554332211 1112233445677777


Q ss_pred             eeeCC-eEE---EeCCCCcEEEEecC
Q 014962          281 LMDVD-TAV---VSDRKGSIAVLSCS  302 (415)
Q Consensus       281 ~Ld~d-~~l---~aD~~gNl~vl~~~  302 (415)
                      +...+ .++   ++..++.|.++...
T Consensus       284 ~~p~~~~~la~~~gs~D~~I~iwd~~  309 (420)
T 4gga_A          284 WCPWQSNVLATGGGTSDRHIRIWNVC  309 (420)
T ss_dssp             ECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred             eCCCcccEEEEEeecCCCEEEEEeCC
Confidence            76433 332   34678899888754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.62  E-value=0.069  Score=50.90  Aligned_cols=172  Identities=12%  Similarity=0.025  Sum_probs=87.6

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc---EEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS---VLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSG   91 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~---~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~   91 (415)
                      .....++++|+.+.++.+..+       ..|++.|..+.+   .+..+.-.....+.++.   +. +..+|+.|..    
T Consensus       101 ~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~l~~~~~----  166 (377)
T 3dwl_C          101 RAATFVRWSPNEDKFAVGSGA-------RVISVCYFEQENDWWVSKHLKRPLRSTILSLD---WHPNNVLLAAGCA----  166 (377)
T ss_dssp             SCEEEEECCTTSSCCEEEESS-------SCEEECCC-----CCCCEEECSSCCSCEEEEE---ECTTSSEEEEEES----
T ss_pred             CceEEEEECCCCCEEEEEecC-------CeEEEEEECCcccceeeeEeecccCCCeEEEE---EcCCCCEEEEEeC----
Confidence            356677888887777666533       348888876655   34444432344555443   33 4578888754    


Q ss_pred             CCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccc
Q 014962           92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE  171 (415)
Q Consensus        92 ~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~  171 (415)
                                  .|.|.+|++..... +.                                   ...+.   ..|.++  
T Consensus       167 ------------d~~i~iwd~~~~~~-~~-----------------------------------~~~~~---~~~~~~--  193 (377)
T 3dwl_C          167 ------------DRKAYVLSAYVRDV-DA-----------------------------------KPEAS---VWGSRL--  193 (377)
T ss_dssp             ------------SSCEEEEEECCSSC-C------------------------------------CCCSC---SSCSCC--
T ss_pred             ------------CCEEEEEEEEeccc-CC-----------------------------------Ccccc---cccccc--
Confidence                        46799999873100 00                                   00000   011110  


Q ss_pred             cccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCc--cceeeeeeeccceEEEEEEEeCCEEEEee
Q 014962          172 TETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNP--QRVRRFAVGRTRFMIMLLTAHFTRIAVGD  247 (415)
Q Consensus       172 ~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~--~~L~~~a~~~~~~~i~sI~~~~n~IlVGD  247 (415)
                         ..-+++......++|++++-- .|++|+.+. .+.|++|++.....  ..+.....+..+.........+.+|+.|.
T Consensus       194 ---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          194 ---PFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             ---CEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred             ---chhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence               122333333667889998843 466465553 45799999986321  00333333333444444445566666664


Q ss_pred             cCCcEEEEEEE
Q 014962          248 CRDGILFYSYH  258 (415)
Q Consensus       248 ~~~Sv~ll~y~  258 (415)
                       ..++.++...
T Consensus       271 -~~~~~~~~~~  280 (377)
T 3dwl_C          271 -NYSPILLQGN  280 (377)
T ss_dssp             -SSSEEEECCC
T ss_pred             -CCcEEEEEeC
Confidence             5555555443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.61  E-value=0.017  Score=57.26  Aligned_cols=200  Identities=12%  Similarity=0.088  Sum_probs=113.5

Q ss_pred             eCCCccCEEEEecC-CCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCC-CeEEEEEEEEEC--CeeEEEEeeec
Q 014962           13 HLGGTPKKVLYHSE-SRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVG--HEQVLVVGTSL   88 (415)
Q Consensus        13 ~L~~tp~~I~y~~~-~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~-E~~~si~~~~l~--~~~~lvVGT~~   88 (415)
                      +-......|++||. .++++++..+       ..|+|.|..+.+....+.+..+ ..|+|+   .|.  +..+|+.|.. 
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~d-------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l---~f~p~~~~~l~s~s~-  185 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKG-------GDIMLWNFGIKDKPTFIKGIGAGGSITGL---KFNPLNTNQFYASSM-  185 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETT-------SCEEEECSSCCSCCEEECCCSSSCCCCEE---EECSSCTTEEEEECS-
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCC-------CEEEEEECCCCCceeEEEccCCCCCEEEE---EEeCCCCCEEEEEeC-
Confidence            33445678999996 4566655433       3599999887765555555543 344444   443  3467776532 


Q ss_pred             CCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcc
Q 014962           89 SSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK  168 (415)
Q Consensus        89 ~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~  168 (415)
                                     -|.|.+|++..                                                      
T Consensus       186 ---------------D~~v~iwd~~~------------------------------------------------------  196 (435)
T 4e54_B          186 ---------------EGTTRLQDFKG------------------------------------------------------  196 (435)
T ss_dssp             ---------------SSCEEEEETTS------------------------------------------------------
T ss_pred             ---------------CCEEEEeeccC------------------------------------------------------
Confidence                           35677777651                                                      


Q ss_pred             ccccccceEEEEE-EEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCC-E
Q 014962          169 LEETETWQLRLAY-STTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFT-R  242 (415)
Q Consensus       169 ~~~~~~~~L~l~~-~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n-~  242 (415)
                            ..++.+. .......+.+++-- .|++|++|- ...|++|++..   +.+.....+..  .|.+|..  .++ +
T Consensus       197 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---~~~~~~~~h~~--~v~~v~~~p~~~~~  265 (435)
T 4e54_B          197 ------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---KELWNLRMHKK--KVTHVALNPCCDWF  265 (435)
T ss_dssp             ------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---CBCCCSBCCSS--CEEEEEECTTCSSE
T ss_pred             ------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---ceeEEEecccc--eEEeeeecCCCceE
Confidence                  0222222 12234445555532 466344432 34599999864   33433333333  3455543  444 6


Q ss_pred             EEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       243 IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++.|..-..|.++..+.............+...|+++.|- |...++.+..+|.|.++....
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            6677777777666544332222223333456678888875 345788889999999998643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.60  E-value=0.28  Score=45.58  Aligned_cols=96  Identities=15%  Similarity=0.110  Sum_probs=59.5

Q ss_pred             eEEEEeCCC--ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCC--CeEEEEEEEEEC-CeeEE
Q 014962            8 NVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG--ETGKSMELVRVG-HEQVL   82 (415)
Q Consensus         8 ~i~~i~L~~--tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~--E~~~si~~~~l~-~~~~l   82 (415)
                      .++.++++.  .|+.++++|+.+.+++...      ....|.++|..+++.+..+.+...  +....+..+.+. +..++
T Consensus        33 ~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  106 (349)
T 1jmx_B           33 VYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV  106 (349)
T ss_dssp             EEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred             EEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEE
Confidence            456788887  8999999999986666642      224699999999998888877542  112222333443 44677


Q ss_pred             EEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        83 vVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      +++.....    .+..+.....++|.+|++.
T Consensus       107 ~~~~~~~~----~~~~~~~~~~~~i~~~d~~  133 (349)
T 1jmx_B          107 YATVNPTQ----RLNDHYVVKPPRLEVFSTA  133 (349)
T ss_dssp             EEEEEEEE----ECSSCEEECCCEEEEEEGG
T ss_pred             EEEccccc----ccccccccCCCeEEEEECC
Confidence            77764211    0011111224788888876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.58  E-value=0.12  Score=50.20  Aligned_cols=137  Identities=9%  Similarity=-0.030  Sum_probs=73.0

Q ss_pred             cCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccc--eEEEEEEEeCCEEEEe---ecCCcEEEEEE
Q 014962          185 WPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTR--FMIMLLTAHFTRIAVG---DCRDGILFYSY  257 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~--~~i~sI~~~~n~IlVG---D~~~Sv~ll~y  257 (415)
                      ..++|++++-- .|.+|+++ -.+.|++|++...  +.+.........  .........+.++++|   ..-..+.++..
T Consensus       175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC--ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            46778888744 46645554 3567999999862  333332111111  2222333455677777   44555555443


Q ss_pred             EccCCeEEEEecCCCcceeEEEEeeeCC-eE-EEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEE
Q 014962          258 HEDARKLEQIYCDPSQRLVADCVLMDVD-TA-VVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIR  331 (415)
Q Consensus       258 ~~~~~~L~~varD~~~~~vta~~~Ld~d-~~-l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~  331 (415)
                      +.....+....-+ ....+.++.+-.++ .+ +++..+|.|.+++....       ...+.....+..+..|+++.
T Consensus       253 ~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~-------~~~~~~l~~~~~~~~v~~~~  320 (402)
T 2aq5_A          253 KHLEEPLSLQELD-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE-------APFLHYLSMFSSKESQRGMG  320 (402)
T ss_dssp             TBCSSCSEEEECC-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS-------TTCEEEEEEECCSSCCSEEE
T ss_pred             ccccCCceEEecc-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC-------CcceEeecccccCCcccceE
Confidence            3222212222222 33457777765443 44 45677999999997541       11244555555566777775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.57  E-value=0.29  Score=45.28  Aligned_cols=93  Identities=8%  Similarity=-0.015  Sum_probs=56.7

Q ss_pred             CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC
Q 014962          205 GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV  284 (415)
Q Consensus       205 g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~  284 (415)
                      ...|.+|++..  .+.+.....+..+...+.+...+++++.|..-..+.++  +....+....-.  ....+.++.+..+
T Consensus       194 d~~i~i~d~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw--d~~~~~~~~~~~--~~~~v~~~~~~~~  267 (340)
T 4aow_A          194 DKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW--DLNEGKHLYTLD--GGDIINALCFSPN  267 (340)
T ss_dssp             TSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEE--ETTTTEEEEEEE--CSSCEEEEEECSS
T ss_pred             CCEEEEEECCC--CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEE--EeccCceeeeec--CCceEEeeecCCC
Confidence            35689999976  23333323233333334444467899999888877665  443333322222  2346777878777


Q ss_pred             CeEEEeCCCCcEEEEecCC
Q 014962          285 DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       285 d~~l~aD~~gNl~vl~~~~  303 (415)
                      +.++++-.++.|.++....
T Consensus       268 ~~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          268 RYWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             SSEEEEEETTEEEEEETTT
T ss_pred             CceeeccCCCEEEEEECCC
Confidence            7777777789999887543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.061  Score=57.79  Aligned_cols=119  Identities=6%  Similarity=-0.034  Sum_probs=72.9

Q ss_pred             EecCCceEEEeeeC--------------CceEEEEe-CCeEEEEeeCCCCc--cceeeeeeeccceEEEEEE--Ee---C
Q 014962          183 TTWPGMVLAICPYL--------------DRYFLASA-GNAFYVCGFPNDNP--QRVRRFAVGRTRFMIMLLT--AH---F  240 (415)
Q Consensus       183 ~~~~g~V~al~~~~--------------g~yLl~~v-g~~l~v~~~~~~~~--~~L~~~a~~~~~~~i~sI~--~~---~  240 (415)
                      ....++|.+++-..              |.+|+++. .+.|++|++.....  ..+.....+..  .|.++.  ..   +
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~  219 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLR  219 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSS
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC--cEEEEEeccCCCCC
Confidence            34567788877443              55455554 45699999975321  11111112222  455555  44   6


Q ss_pred             CEEEEeecCCcEEEEEEEccCCe--EEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          241 TRIAVGDCRDGILFYSYHEDARK--LEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       241 n~IlVGD~~~Sv~ll~y~~~~~~--L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++++.|+.-..+.++..+.....  ............++++.+-. ...++++..+|.|.+++...
T Consensus       220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            78999999889988877654321  12222333556778888753 44788889999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.2  Score=47.50  Aligned_cols=177  Identities=9%  Similarity=0.019  Sum_probs=91.2

Q ss_pred             EEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccc
Q 014962           46 ICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTF  125 (415)
Q Consensus        46 i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~  125 (415)
                      +.+.|..+.+++..+++...+.+.++..-...+..+++.|..                .|.|.+|++..           
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----------------dg~i~~wd~~~-----------  158 (343)
T 3lrv_A          106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN----------------RGTIGFQSYED-----------  158 (343)
T ss_dssp             EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET----------------TCCEEEEESSS-----------
T ss_pred             eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC----------------CCcEEEEECCC-----------
Confidence            444566677777777777666676655432114467777754                46788888772           


Q ss_pred             cccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEE-E
Q 014962          126 CSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLA-S  203 (415)
Q Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~-~  203 (415)
                                                                       .+...+.......+|.+++-- .|.+|++ +
T Consensus       159 -------------------------------------------------~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          159 -------------------------------------------------DSQYIVHSAKSDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             -------------------------------------------------SCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred             -------------------------------------------------CcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence                                                             012222223345567777743 4563443 3


Q ss_pred             eCCeEEEEeeCCCCccce-eeeee-eccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeE----EEEecCCCcceeE
Q 014962          204 AGNAFYVCGFPNDNPQRV-RRFAV-GRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKL----EQIYCDPSQRLVA  277 (415)
Q Consensus       204 vg~~l~v~~~~~~~~~~L-~~~a~-~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L----~~varD~~~~~vt  277 (415)
                      ..+.|.+|++...  +.+ ..... +..+...+.....+.+++.|. -..+.+  |+....+.    ..+..+..+....
T Consensus       190 ~dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          190 PDGILDVYNLSSP--DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVC--FDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             TTSCEEEEESSCT--TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEE--EETTSSTTCBSSCCCBC-----CCE
T ss_pred             CCCEEEEEECCCC--CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEE--EEcCCCCcceeecccccccccccce
Confidence            4567999999863  223 23222 333333444444677888888 345544  44433221    1100010111112


Q ss_pred             EEEeeeCC-eEEEeCC-CCcEEEEecCC
Q 014962          278 DCVLMDVD-TAVVSDR-KGSIAVLSCSD  303 (415)
Q Consensus       278 a~~~Ld~d-~~l~aD~-~gNl~vl~~~~  303 (415)
                      ++.|-.++ .++++.. ++.+.++++..
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence            45553333 4444344 77888888754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.35  E-value=0.18  Score=49.82  Aligned_cols=210  Identities=11%  Similarity=0.103  Sum_probs=120.7

Q ss_pred             EEEEeCCCccCEEEEecCC-CEEEEEEEeeCCCcceeeEEEEeCCC----------CcEEEEEeCCCCCeEEEEEEEEEC
Q 014962            9 VRKFHLGGTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLS----------GSVLSSFKLELGETGKSMELVRVG   77 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~-~~~~v~~~~~~~~~~~s~i~l~d~~t----------~~~i~s~~l~~~E~~~si~~~~l~   77 (415)
                      .+.++-...+.+|+++|.. +++++++ .      .+.|+++|..+          ...+..+.-... .+.++   .+.
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~-~------dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l---~~~  190 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKT-P------SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGL---SWN  190 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEEC-S------SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCE---EEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEEC-C------CCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEE---EeC
Confidence            5667778899999999974 4444443 2      23588888654          344444443222 23333   332


Q ss_pred             -Cee-EEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcC
Q 014962           78 -HEQ-VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSL  155 (415)
Q Consensus        78 -~~~-~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  155 (415)
                       +.. +|+.|..                .|.|.+|++...                                        
T Consensus       191 ~~~~~~l~s~~~----------------dg~i~vwd~~~~----------------------------------------  214 (430)
T 2xyi_A          191 PNLNGYLLSASD----------------DHTICLWDINAT----------------------------------------  214 (430)
T ss_dssp             TTSTTEEEEECT----------------TSCEEEEETTSC----------------------------------------
T ss_pred             CCCCCeEEEEeC----------------CCeEEEEeCCCC----------------------------------------
Confidence             233 7777733                578999988730                                        


Q ss_pred             CCCCCCCCCCCccccccccceEEEEEE-EecCCceEEEeee--CCceEEEE--eCCeEEEEeeCCCC-ccceeeeeeecc
Q 014962          156 CSSPDDASCDGIKLEETETWQLRLAYS-TTWPGMVLAICPY--LDRYFLAS--AGNAFYVCGFPNDN-PQRVRRFAVGRT  229 (415)
Q Consensus       156 ~~~~~~~~~~g~~~~~~~~~~L~l~~~-~~~~g~V~al~~~--~g~yLl~~--vg~~l~v~~~~~~~-~~~L~~~a~~~~  229 (415)
                         ..            ....+..... ....+.|.+++-.  .+. ++++  ....|++|++.... .+.+.....+..
T Consensus       215 ---~~------------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          215 ---PK------------EHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             ---CB------------GGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             ---CC------------CCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence               00            0011211111 2346778888754  355 4443  35679999998632 122333223333


Q ss_pred             ceEEEEEEEeCC-EEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC--eEEEeCCCCcEEEEecCC
Q 014962          230 RFMIMLLTAHFT-RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       230 ~~~i~sI~~~~n-~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d--~~l~aD~~gNl~vl~~~~  303 (415)
                      ..........+. ++++|..-..|.++.++.....+..+..  ....++++.+-.++  .++.+..+|.|.++.+..
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            333333334454 6778888888877776543333444332  45678888886544  477788899999998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.34  E-value=0.03  Score=53.50  Aligned_cols=199  Identities=11%  Similarity=0.068  Sum_probs=111.9

Q ss_pred             CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCC--cEEEEEeCCC-CCeEEEEEEEEEC-CeeEEEEeeecCC
Q 014962           15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG--SVLSSFKLEL-GETGKSMELVRVG-HEQVLVVGTSLSS   90 (415)
Q Consensus        15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~--~~i~s~~l~~-~E~~~si~~~~l~-~~~~lvVGT~~~~   90 (415)
                      ......++++|+.+.++.+..+       ..|++.|..+.  +.+..  |.. ...+.++   .+. +..+|+.|..   
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d-------~~i~iw~~~~~~~~~~~~--~~~h~~~v~~~---~~s~~~~~l~s~s~---   75 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTAT-------NQVELYEQDGNGWKHART--FSDHDKIVTCV---DWAPKSNRIVTCSQ---   75 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSS-------SCBCEEEEETTEEEECCC--BCCCSSCEEEE---EECTTTCCEEEEET---
T ss_pred             CCcEEEEEECCCCCEEEEecCC-------CEEEEEEccCCceEEEEE--EecCCceEEEE---EEeCCCCEEEEEeC---
Confidence            3467889999998877665432       35788887776  44333  333 2344443   443 4467777753   


Q ss_pred             CCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccc
Q 014962           91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE  170 (415)
Q Consensus        91 ~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~  170 (415)
                                   .|.|.+|++...                                                   .   
T Consensus        76 -------------d~~v~vwd~~~~---------------------------------------------------~---   88 (377)
T 3dwl_C           76 -------------DRNAYVYEKRPD---------------------------------------------------G---   88 (377)
T ss_dssp             -------------TSSEEEC------------------------------------------------------------
T ss_pred             -------------CCeEEEEEcCCC---------------------------------------------------C---
Confidence                         467888888830                                                   0   


Q ss_pred             ccccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCcc-ceeeeee-eccceEEEEEE--EeCCEEE
Q 014962          171 ETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQ-RVRRFAV-GRTRFMIMLLT--AHFTRIA  244 (415)
Q Consensus       171 ~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~-~L~~~a~-~~~~~~i~sI~--~~~n~Il  244 (415)
                         .++.. .......++|++++-- +|++|+++. ...|.+|++...... .++.... +..  .+.+|.  ..+++++
T Consensus        89 ---~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           89 ---TWKQT-LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS--TILSLDWHPNNVLLA  162 (377)
T ss_dssp             ---CCCCE-EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS--CEEEEEECTTSSEEE
T ss_pred             ---ceeee-eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC--CeEEEEEcCCCCEEE
Confidence               00000 1112356788888743 455455543 456999999863210 1222221 222  455554  4567999


Q ss_pred             EeecCCcEEEEEEEccC----------------CeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962          245 VGDCRDGILFYSYHEDA----------------RKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       245 VGD~~~Sv~ll~y~~~~----------------~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~  303 (415)
                      .|..-..+.++..+...                +++...-  ....+++++.|-.+ ..++.+..+|.|.++....
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            99988889888764211                2222221  45667888888644 4788889999999888654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.13  Score=56.81  Aligned_cols=195  Identities=15%  Similarity=0.156  Sum_probs=117.3

Q ss_pred             EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCC
Q 014962           12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG   91 (415)
Q Consensus        12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~   91 (415)
                      .........++|+|+.++++++..+       ..|+|.|..+.+.+..  +.....|.++....  + .+|+.|..    
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~D-------g~I~lw~~~~~~~~~~--~~~~~~V~~l~fsp--g-~~L~S~s~----   77 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVT-------GEVHIYGQQQVEVVIK--LEDRSAIKEMRFVK--G-IYLVVINA----   77 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETT-------SEEEEECSTTCEEEEE--CSSCCCEEEEEEET--T-TEEEEEET----
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCC-------CEEEEEeCCCcEEEEE--cCCCCCEEEEEEcC--C-CEEEEEEC----
Confidence            3345678899999999998887644       3699999887776543  44455666665443  3 47776643    


Q ss_pred             CCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccc
Q 014962           92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE  171 (415)
Q Consensus        92 ~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~  171 (415)
                                  .|.|.+|++..                                                   |     
T Consensus        78 ------------D~~v~lWd~~~---------------------------------------------------~-----   89 (902)
T 2oaj_A           78 ------------KDTVYVLSLYS---------------------------------------------------Q-----   89 (902)
T ss_dssp             ------------TCEEEEEETTT---------------------------------------------------C-----
T ss_pred             ------------cCeEEEEECCC---------------------------------------------------C-----
Confidence                        46788888762                                                   0     


Q ss_pred             cccceEEEEEEEecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeee----------eccceEEEEEEEe
Q 014962          172 TETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAV----------GRTRFMIMLLTAH  239 (415)
Q Consensus       172 ~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~----------~~~~~~i~sI~~~  239 (415)
                         ..+   +.....+.|++++-- .|.+|++|. ...|.+|++...  + +.....          ....-.|.+|.-.
T Consensus        90 ---~~~---~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~--~-~~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           90 ---KVL---TTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD--Q-LSSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             ---SEE---EEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT--E-EEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             ---cEE---EEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC--c-cccceeccccccccccccCCCCeEEEEEc
Confidence               011   222356789988843 456566654 456999999752  2 211110          0011134555543


Q ss_pred             ---CCEEEEeecCCcEEEEEEEccCCeEEEEecCC-----------------CcceeEEEEeee-CCeEEEeCCCCcEEE
Q 014962          240 ---FTRIAVGDCRDGILFYSYHEDARKLEQIYCDP-----------------SQRLVADCVLMD-VDTAVVSDRKGSIAV  298 (415)
Q Consensus       240 ---~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~-----------------~~~~vta~~~Ld-~d~~l~aD~~gNl~v  298 (415)
                         ++.+++|..-..+ +  |+...++....-...                 ...+|+++.|-. ...++.+..+|.|.+
T Consensus       161 p~~~~~l~~g~~dg~v-l--Wd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          161 PRDIGTVLISYEYVTL-T--YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             TTEEEEEEEECSSCEE-E--EETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             cCCCCEEEEEeCCCcE-E--EECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence               2467777655444 4  455454433222211                 125688888864 447888899999999


Q ss_pred             EecC
Q 014962          299 LSCS  302 (415)
Q Consensus       299 l~~~  302 (415)
                      ++..
T Consensus       238 Wd~~  241 (902)
T 2oaj_A          238 WDAN  241 (902)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.33  E-value=0.68  Score=43.09  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=72.9

Q ss_pred             cCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          185 WPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      ..++|.+++-. .|++|++|. ...|.+|++...  +.+.....+......+.+...+++++.|..-..+.++.++.. .
T Consensus        54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~  130 (304)
T 2ynn_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-W  130 (304)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-T
T ss_pred             cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-c
Confidence            46778887744 355455443 456999999762  334443333333444444556789999999899977655432 2


Q ss_pred             eEEEEecCCCcceeEEEEeee--CCeEEEeCCCCcEEEEecC
Q 014962          263 KLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       263 ~L~~varD~~~~~vta~~~Ld--~d~~l~aD~~gNl~vl~~~  302 (415)
                      .+...- ......|+++.|-.  ...++.+..+|.+.++...
T Consensus       131 ~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~  171 (304)
T 2ynn_A          131 ALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG  171 (304)
T ss_dssp             EEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred             chhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            333222 33556788888863  3578888999999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.29  E-value=0.68  Score=42.72  Aligned_cols=229  Identities=12%  Similarity=0.076  Sum_probs=121.6

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCC--CCc--EEEEEeCCCCCeEEEEEEEEEC-CeeEE
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL--SGS--VLSSFKLELGETGKSMELVRVG-HEQVL   82 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~--t~~--~i~s~~l~~~E~~~si~~~~l~-~~~~l   82 (415)
                      .+..++....|..++++|+.+.++++..+      ...|++++..  +++  .+..+....  .+.   .+.+. +..++
T Consensus        30 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~s~dg~~l   98 (343)
T 1ri6_A           30 LTQVVDVPGQVQPMVVSPDKRYLYVGVRP------EFRVLAYRIAPDDGALTFAAESALPG--SLT---HISTDHQGQFV   98 (343)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEEEETT------TTEEEEEEECTTTCCEEEEEEEECSS--CCS---EEEECTTSSEE
T ss_pred             EeeeEecCCCCceEEECCCCCEEEEeecC------CCeEEEEEecCCCCceeeccccccCC--CCc---EEEEcCCCCEE
Confidence            45667888899999999999977776532      1457775543  544  445554432  333   23343 44566


Q ss_pred             EEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCC
Q 014962           83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDA  162 (415)
Q Consensus        83 vVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  162 (415)
                      +++..               ..|.|.+|++..                                                
T Consensus        99 ~~~~~---------------~~~~i~~~d~~~------------------------------------------------  115 (343)
T 1ri6_A           99 FVGSY---------------NAGNVSVTRLED------------------------------------------------  115 (343)
T ss_dssp             EEEET---------------TTTEEEEEEEET------------------------------------------------
T ss_pred             EEEec---------------CCCeEEEEECCC------------------------------------------------
Confidence            55532               147899998851                                                


Q ss_pred             CCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccceeeee----eecc--ceEE
Q 014962          163 SCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFA----VGRT--RFMI  233 (415)
Q Consensus       163 ~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a----~~~~--~~~i  233 (415)
                         |        ...+.+........+.+++-- .|++|+++.  .+.|.+|++..+.  .+....    ....  ....
T Consensus       116 ---~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~  182 (343)
T 1ri6_A          116 ---G--------LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG--HLVAQDPAEVTTVEGAGPRH  182 (343)
T ss_dssp             ---T--------EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS--CEEEEEEEEEECSTTCCEEE
T ss_pred             ---C--------ccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC--ceeeecccccccCCCCCcce
Confidence               0        012223223333445555422 355466653  5779999997532  232111    1111  2223


Q ss_pred             EEEEEeCCEEEEeecC-CcEEEEEEEccCCeEE---EEec---C-CCcceeEEEEeeeCC-eEEEeC-CCCcEEEEecCC
Q 014962          234 MLLTAHFTRIAVGDCR-DGILFYSYHEDARKLE---QIYC---D-PSQRLVADCVLMDVD-TAVVSD-RKGSIAVLSCSD  303 (415)
Q Consensus       234 ~sI~~~~n~IlVGD~~-~Sv~ll~y~~~~~~L~---~var---D-~~~~~vta~~~Ld~d-~~l~aD-~~gNl~vl~~~~  303 (415)
                      ..+...++++++++.. ..+.++.++...+.+.   .+..   . ....++.++.+-.++ .+++++ .++.|.+++...
T Consensus       183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          183 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            3444567788888744 4566666544334332   2221   1 113456666664333 455454 578899888753


Q ss_pred             CcCCCCCCCCccceeeeeecCccccEE
Q 014962          304 RLEDNASPECNLTPNCAYHMGEIAVSI  330 (415)
Q Consensus       304 ~~~~~~~~~~kL~~~~~fhlGd~Vt~~  330 (415)
                      .     .  ..+.....+..+..+..+
T Consensus       263 ~-----~--~~~~~~~~~~~~~~~~~~  282 (343)
T 1ri6_A          263 D-----G--SVLSKEGFQPTETQPRGF  282 (343)
T ss_dssp             T-----S--CCEEEEEEEECSSSCCCE
T ss_pred             C-----C--CceEEeeeecCCCccceE
Confidence            1     1  134444445444445444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.047  Score=52.55  Aligned_cols=114  Identities=14%  Similarity=0.155  Sum_probs=65.7

Q ss_pred             cCCceEEEeeeC--CceEEEE--eCCeEEEEeeCCCCccceeeeeeecc----ceEEEEEEE--eC-CEEEEeecCC---
Q 014962          185 WPGMVLAICPYL--DRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRT----RFMIMLLTA--HF-TRIAVGDCRD---  250 (415)
Q Consensus       185 ~~g~V~al~~~~--g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~----~~~i~sI~~--~~-n~IlVGD~~~---  250 (415)
                      ..++|.+++-..  +. ++++  ....|.+|++...  +.+........    ...+.++..  .+ .++++|..-.   
T Consensus       164 ~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAH-VFASAGSSNFASIWDLKAK--KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             SSCCCCEEEECSSCTT-EEEEESSSSCEEEEETTTT--EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred             CCCCeeEEEeCCCCCc-EEEEEcCCCCEEEEECCCC--CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence            456777777443  45 4443  3456999999862  33333222200    223555554  44 4777777665   


Q ss_pred             cEEEEEEEccCCeEEEEecCCCcceeEEEEee--eCCeEEEeCCCCcEEEEecC
Q 014962          251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~  302 (415)
                      .+.++..+.....+..+ .......++++.+-  +...++.+..+|.|.++...
T Consensus       241 ~i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          241 SILIWDLRNANTPLQTL-NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             CCCEEETTSTTSCSBCC-CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             eEEEEeCCCCCCCcEEe-ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence            77666544322222222 11345678888885  44578888999999999854

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.20  E-value=0.7  Score=43.93  Aligned_cols=105  Identities=11%  Similarity=0.077  Sum_probs=58.4

Q ss_pred             eEEEeeeCCceEEEEe---CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEe-CCEEEEeecCC---------cEEEE
Q 014962          189 VLAICPYLDRYFLASA---GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRD---------GILFY  255 (415)
Q Consensus       189 V~al~~~~g~yLl~~v---g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~-~n~IlVGD~~~---------Sv~ll  255 (415)
                      +..|+--.++ |.++.   ++.|.++++...  +.+.......   .+..|... .+.+++++.-.         +-.++
T Consensus       133 p~~i~~~~~~-lyv~~~~~~~~v~viD~~t~--~~~~~i~~g~---~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~  206 (328)
T 3dsm_A          133 TEQMVQYGKY-VYVNCWSYQNRILKIDTETD--KVVDELTIGI---QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLY  206 (328)
T ss_dssp             CCCEEEETTE-EEEEECTTCCEEEEEETTTT--EEEEEEECSS---CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred             cceEEEECCE-EEEEcCCCCCEEEEEECCCC--eEEEEEEcCC---CccceEEcCCCCEEEEECCCccCCccccCCceEE
Confidence            3444444455 77763   678999998752  3333322222   22333332 35678877654         35678


Q ss_pred             EEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEec
Q 014962          256 SYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       256 ~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~  301 (415)
                      .++...+++...-.=....+...+.+- |.+.+.+++.  .++++..
T Consensus       207 ~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          207 RIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             EEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred             EEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence            889887776533221111244555553 3557778886  7776664

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.071  Score=51.28  Aligned_cols=112  Identities=8%  Similarity=0.067  Sum_probs=68.7

Q ss_pred             CCceEEEeeeC-C-ceEEEEeCC----eEEEEeeCCCCccceeeee-eeccceEEEEEEE---eCCEEEEeecCCcEEEE
Q 014962          186 PGMVLAICPYL-D-RYFLASAGN----AFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTA---HFTRIAVGDCRDGILFY  255 (415)
Q Consensus       186 ~g~V~al~~~~-g-~yLl~~vg~----~l~v~~~~~~~~~~L~~~a-~~~~~~~i~sI~~---~~n~IlVGD~~~Sv~ll  255 (415)
                      .++|.+++-.. | .+|+++...    .|++|++.... +.+.... .+..  .+.++..   .+++++.|..-..+.++
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~dg~v~~w  290 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQK--GILSLDWCHQDEHLLLSSGRDNTVLLW  290 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSS--CEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccC--ceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence            57788887443 3 435555544    89999998632 2232222 2222  3555543   56789999887777665


Q ss_pred             EEEccCCeEEEEecCCCcceeEEEEeeeC--CeEEEeCCCCcEEEEecCC
Q 014962          256 SYHEDARKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       256 ~y~~~~~~L~~varD~~~~~vta~~~Ld~--d~~l~aD~~gNl~vl~~~~  303 (415)
                      .  ...++....-. ....+++++.+-.+  ..++.+..+|.|.++++..
T Consensus       291 d--~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          291 N--PESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             C--SSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             e--CCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            4  33333322222 23457778888654  4678888999999999765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.02  E-value=1  Score=42.26  Aligned_cols=192  Identities=12%  Similarity=0.059  Sum_probs=106.7

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+.+.++.+..+       ..|++.|..+++.+..+.-.. ..+.+   +.+. +..+|+.|..        
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D-------~~v~~wd~~~~~~~~~~~~h~-~~v~~---~~~~~~~~~l~s~s~--------  127 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWD-------KTLRLWDVATGETYQRFVGHK-SDVMS---VDIDKKASMIISGSR--------  127 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCS-SCEEE---EEECTTSCEEEEEET--------
T ss_pred             cEEEEEECCCCCEEEEEeCC-------CEEEEEECCCCCeeEEEccCC-CcEEE---EEEcCCCCEEEEEeC--------
Confidence            45567788887776655433       469999999998877665322 23443   3343 4567777744        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              -|.|.+|++..                                                            .
T Consensus       128 --------D~~i~vwd~~~------------------------------------------------------------~  139 (319)
T 3frx_A          128 --------DKTIKVWTIKG------------------------------------------------------------Q  139 (319)
T ss_dssp             --------TSCEEEEETTS------------------------------------------------------------C
T ss_pred             --------CCeEEEEECCC------------------------------------------------------------C
Confidence                    35677776651                                                            0


Q ss_pred             eEEEEEEEecCCceEEEeeeC-------CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEee
Q 014962          176 QLRLAYSTTWPGMVLAICPYL-------DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD  247 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~~-------g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD  247 (415)
                      .+..+  ....+.|.+++-..       +.+|+.+ ....|.+|++...  +.......+..+.........+.+|+.|.
T Consensus       140 ~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          140 CLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             EEEEE--CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT--EEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEE--eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc--hhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence            11111  12345566555332       3324433 4455899999752  22222222333334444445678999998


Q ss_pred             cCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      .-..+.++.  ....+....-.  ....+.++.|-.+..++++-....+.++..+.
T Consensus       216 ~dg~i~iwd--~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~  267 (319)
T 3frx_A          216 KDGEIMLWN--LAAKKAMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP  267 (319)
T ss_dssp             TTCEEEEEE--TTTTEEEEEEE--CCSCEEEEEECSSSSEEEEEETTEEEEEEETT
T ss_pred             CCCeEEEEE--CCCCcEEEEec--CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCc
Confidence            888886654  44443322222  13467888886555444443345577777553

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.89  E-value=1.2  Score=43.75  Aligned_cols=111  Identities=7%  Similarity=-0.002  Sum_probs=62.4

Q ss_pred             CCceEEEeee-CCceEEEEeCC----eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCc-EEEEEEEc
Q 014962          186 PGMVLAICPY-LDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG-ILFYSYHE  259 (415)
Q Consensus       186 ~g~V~al~~~-~g~yLl~~vg~----~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~S-v~ll~y~~  259 (415)
                      .+.+.+++-- .|++|+.+...    +|++|++...  + ++.................+++|+++....+ ..++.|+.
T Consensus       266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~--~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC--C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            4556666532 46656665542    5777777642  2 3322222222233444557888888776543 56778888


Q ss_pred             cCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCC---cEEEEecC
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKG---SIAVLSCS  302 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~g---Nl~vl~~~  302 (415)
                      +.+++..+....   .+.++.+-.++ .++.+..++   .|+++...
T Consensus       343 ~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          343 ATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             TTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            877776665542   66777775443 444443333   57776643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.75  E-value=0.12  Score=51.14  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             cCCceEEEee--eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeec-cceEE--EEEEEeCCEEEEeecCCcEEEEEEE
Q 014962          185 WPGMVLAICP--YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGR-TRFMI--MLLTAHFTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       185 ~~g~V~al~~--~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~-~~~~i--~sI~~~~n~IlVGD~~~Sv~ll~y~  258 (415)
                      -.++|++|+-  .++.+|+.+ ..+.|.+|++..   ..++.....+ ....+  ......+++|++|+.-..|.++.  
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd--  237 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN--  237 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS---CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE--
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC---CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec--
Confidence            4678999883  456634433 235699999975   2233322221 12223  34445678999999888887764  


Q ss_pred             ccCCeEEEEecCCCcceeEEEEeeeC-C-eEEEeCCCCcEEEEecCC
Q 014962          259 EDARKLEQIYCDPSQRLVADCVLMDV-D-TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       259 ~~~~~L~~varD~~~~~vta~~~Ld~-d-~~l~aD~~gNl~vl~~~~  303 (415)
                      .....+..+  .....+|+++.|-.. + .++.+..+|.|.++....
T Consensus       238 ~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          238 MDGKELWNL--RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             SSSCBCCCS--BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             cCcceeEEE--ecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            333333222  224557888888533 3 466778889988887543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.74  E-value=1.5  Score=48.19  Aligned_cols=113  Identities=11%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             cCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962          185 WPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       185 ~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      -.++|.+|+-..|++|+.+ -.+.|.+|++..  .+.+.... +......+.....++++++|+.-..|.++  +....+
T Consensus        57 ~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~--~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lw--d~~~~~  131 (902)
T 2oaj_A           57 DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYS--QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVY--DIDRDQ  131 (902)
T ss_dssp             SCCCEEEEEEETTTEEEEEETTCEEEEEETTT--CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEE--ETTTTE
T ss_pred             CCCCEEEEEEcCCCEEEEEECcCeEEEEECCC--CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEE--ECCCCc
Confidence            4678999985558745543 456799999975  23344432 22233344444578899999998888665  555555


Q ss_pred             EEEEe--------c--CCCcceeEEEEeeeC--CeEEEeCCCCcEEEEecCC
Q 014962          264 LEQIY--------C--DPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       264 L~~va--------r--D~~~~~vta~~~Ld~--d~~l~aD~~gNl~vl~~~~  303 (415)
                      +...-        +  ......|+++.|-..  ..++++..+|.+ ++....
T Consensus       132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~  182 (902)
T 2oaj_A          132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE  182 (902)
T ss_dssp             EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT
T ss_pred             cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC
Confidence            53221        1  223457888888633  478888889998 887543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=95.69  E-value=1.3  Score=43.46  Aligned_cols=127  Identities=8%  Similarity=0.040  Sum_probs=77.1

Q ss_pred             eEEEEEEEecCCceEEEeeeC--CceEEEEe--CCeEEEEeeCCC-------C-ccceeeeeeeccceEEEEEEEeCC-E
Q 014962          176 QLRLAYSTTWPGMVLAICPYL--DRYFLASA--GNAFYVCGFPND-------N-PQRVRRFAVGRTRFMIMLLTAHFT-R  242 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~~--g~yLl~~v--g~~l~v~~~~~~-------~-~~~L~~~a~~~~~~~i~sI~~~~n-~  242 (415)
                      +++........++|++|+-..  +. ++++.  ...|++|++...       . .+.+.....+.......+....+. +
T Consensus       118 ~~~~~~~~~h~~~v~~l~~~p~~~~-~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          118 KIEIEIKINHEGEVNRARYMPQNAC-VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             CEEEEEEEEESSCCSEEEEETTEEE-EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred             ceEEEEEEcCCCcEEEEEECCCCCc-EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence            677777777889999999775  34 55544  346999999751       0 112222233333333344444455 8


Q ss_pred             EEEeecCCcEEEEEEEccC---CeEEEE-ecCCCcceeEEEEeee--CCeEEEeCCCCcEEEEecCC
Q 014962          243 IAVGDCRDGILFYSYHEDA---RKLEQI-YCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       243 IlVGD~~~Sv~ll~y~~~~---~~L~~v-arD~~~~~vta~~~Ld--~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++.|+.-..+.++..+...   ..+... .-......+.++.+-.  ...++.+..+|.|.++....
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999988888887665421   111111 1113445678888764  34667778899999998654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.67  E-value=1.2  Score=49.86  Aligned_cols=101  Identities=7%  Similarity=-0.001  Sum_probs=62.1

Q ss_pred             CceEEEEeCCeEEEEeeCCCCccceeeee-eeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcce
Q 014962          197 DRYFLASAGNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRL  275 (415)
Q Consensus       197 g~yLl~~vg~~l~v~~~~~~~~~~L~~~a-~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~  275 (415)
                      |++|+++.++.+.+|++...  ..+.... .+............++++++|+.-..+.++.  ...+....... ....+
T Consensus       810 g~~l~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd--~~~~~~~~~~~-~h~~~  884 (1249)
T 3sfz_A          810 GDKIIVAAKNKVLLFDIHTS--GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN--IDSRLKVADCR-GHLSW  884 (1249)
T ss_dssp             SSEEEEEETTEEEEEETTTC--CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE--TTTTEEEEEEC-CCSSC
T ss_pred             CCEEEEEcCCcEEEEEecCC--CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE--cCCCceeeecC-CCccc
Confidence            44456666666777766542  2222211 1222333444455678899998888876654  44454444333 35668


Q ss_pred             eEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          276 VADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       276 vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      ++++.|-.+ ..++.+..+|.+.+++..
T Consensus       885 v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          885 VHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            888888644 478888999999999853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.67  E-value=2.6  Score=44.15  Aligned_cols=112  Identities=8%  Similarity=-0.018  Sum_probs=64.9

Q ss_pred             CCceEEEeeeC-C--ceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962          186 PGMVLAICPYL-D--RYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       186 ~g~V~al~~~~-g--~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      .+.|.+++--. +  .+|+.+ ..+.|.+|++..  .+.+.....+...+..+.+...+++|+.|..-..|.++.  ...
T Consensus       517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~--~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd--~~~  592 (694)
T 3dm0_A          517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD--LAE  592 (694)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE--TTT
T ss_pred             CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE--CCC
Confidence            34566665332 1  324443 456699999976  233333333333444444555678999999888887664  434


Q ss_pred             CeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          262 RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       262 ~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++....-.  ....+.++.|-.++.++++-.++.|.++....
T Consensus       593 ~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~  632 (694)
T 3dm0_A          593 GKKLYSLE--ANSVIHALCFSPNRYWLCAATEHGIKIWDLES  632 (694)
T ss_dssp             TEEEECCB--CSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             CceEEEec--CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC
Confidence            43322211  23457777776666666665667788888543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.62  E-value=1.5  Score=41.09  Aligned_cols=81  Identities=17%  Similarity=0.047  Sum_probs=50.9

Q ss_pred             ceEEEee-eCCceEEEEe--CCeEEEEeeCCCCccceeeeeeecc---ceEEEEEEEeCCEEEEeecC-CcEEEEEEEcc
Q 014962          188 MVLAICP-YLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRT---RFMIMLLTAHFTRIAVGDCR-DGILFYSYHED  260 (415)
Q Consensus       188 ~V~al~~-~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~---~~~i~sI~~~~n~IlVGD~~-~Sv~ll~y~~~  260 (415)
                      .+.+++- -.|++|+++.  .+.|.+|++..++  .++.......   ...-..+...+.+|++++.. ..+.+++++.+
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG--HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGG--CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCC--cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence            3555552 2467565543  4779999997432  2333222222   22334455677899999876 67888888888


Q ss_pred             CCeEEEEecC
Q 014962          261 ARKLEQIYCD  270 (415)
Q Consensus       261 ~~~L~~varD  270 (415)
                      .+++..+...
T Consensus       319 tg~l~~~~~~  328 (347)
T 3hfq_A          319 SGKLSLLQKD  328 (347)
T ss_dssp             TCCEEEEEEE
T ss_pred             CCeEEecccc
Confidence            8888877754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.58  E-value=1.4  Score=40.66  Aligned_cols=117  Identities=9%  Similarity=0.055  Sum_probs=70.3

Q ss_pred             cCCceEEEeeeC---CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--e-------------CCEEEE
Q 014962          185 WPGMVLAICPYL---DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--H-------------FTRIAV  245 (415)
Q Consensus       185 ~~g~V~al~~~~---g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~-------------~n~IlV  245 (415)
                      -.++|.+++-..   |.+|+++ ..+.|.+|++.............+..  .+.++.-  .             +.+|+.
T Consensus        98 h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~~~~l~s  175 (297)
T 2pm7_B           98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVT  175 (297)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS--CEEEEEECCCC------------CCEEEE
T ss_pred             CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC--ccceEeecCCcccccccCCCCCCcceEEE
Confidence            356788887432   5535543 45679999997532111111111222  2333332  1             458899


Q ss_pred             eecCCcEEEEEEEccCCeEEEEe-cCCCcceeEEEEeeeC----CeEEEeCCCCcEEEEecCC
Q 014962          246 GDCRDGILFYSYHEDARKLEQIY-CDPSQRLVADCVLMDV----DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       246 GD~~~Sv~ll~y~~~~~~L~~va-rD~~~~~vta~~~Ld~----d~~l~aD~~gNl~vl~~~~  303 (415)
                      |..-..|.++.++.......... -..+..+|.++.|-.+    ..++.+..+|.+.+.....
T Consensus       176 gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            99989999988876543332221 1235668889988543    3677888899999998653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.54  E-value=1.7  Score=41.24  Aligned_cols=113  Identities=11%  Similarity=0.077  Sum_probs=72.8

Q ss_pred             ecCCceEEEeeeC--CceEEEE-eCCeEEEEeeCCCCccceeeeeeec---cceEEEEEEEeCCEEEEeecCCcEEEEEE
Q 014962          184 TWPGMVLAICPYL--DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGR---TRFMIMLLTAHFTRIAVGDCRDGILFYSY  257 (415)
Q Consensus       184 ~~~g~V~al~~~~--g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~---~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y  257 (415)
                      ...++|.+++-..  +.+|+++ ....|.+|++..   +.++......   .......+...++++++|+.-..+.++..
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  192 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL  192 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence            4678899988554  4535544 346799999985   2333322222   23344445556889999998888766554


Q ss_pred             EccCCeEEEEecCCCcceeEEEEeeeCC--eEEEeCCCCcEEEEecCC
Q 014962          258 HEDARKLEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       258 ~~~~~~L~~varD~~~~~vta~~~Ld~d--~~l~aD~~gNl~vl~~~~  303 (415)
                        ....+..+.  .....+.++.+-.++  .++.+..+|.|.++....
T Consensus       193 --~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          193 --DGHEIFKEK--LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             --TSCEEEEEE--CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             --CCCEEEEec--cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence              444444443  245678888887554  578888999999998654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.50  E-value=1.5  Score=45.46  Aligned_cols=196  Identities=8%  Similarity=0.014  Sum_probs=115.7

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeC------CCCCeEEEEEEEEEC-CeeEEEEeeecC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKL------ELGETGKSMELVRVG-HEQVLVVGTSLS   89 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l------~~~E~~~si~~~~l~-~~~~lvVGT~~~   89 (415)
                      ..+.++++|+.+.++.+..+       ..|+|.|..+++.+..+.-      .-...+.   .+.|. +..+|+.|..  
T Consensus       192 ~V~~v~fspdg~~las~s~D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~---~v~~spdg~~l~s~s~--  259 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGD-------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF---GLTWSPDGTKIASASA--  259 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEE---EEEECTTSSEEEEEET--
T ss_pred             ceEEEEECCCCCEEEEEECC-------CcEEEEECCCCcEeeeeccccccccccCCCEE---EEEECCCCCEEEEEeC--
Confidence            46678889988877666533       3599999988887765532      1122333   44454 4577776643  


Q ss_pred             CCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccc
Q 014962           90 SGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL  169 (415)
Q Consensus        90 ~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~  169 (415)
                                    -|.|.+|++..                                                   |   
T Consensus       260 --------------D~~v~lWd~~~---------------------------------------------------~---  271 (611)
T 1nr0_A          260 --------------DKTIKIWNVAT---------------------------------------------------L---  271 (611)
T ss_dssp             --------------TSEEEEEETTT---------------------------------------------------T---
T ss_pred             --------------CCeEEEEeCCC---------------------------------------------------C---
Confidence                          36788887762                                                   0   


Q ss_pred             cccccceEEEE-EEEecCCceEEEeeeCCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEee
Q 014962          170 EETETWQLRLA-YSTTWPGMVLAICPYLDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD  247 (415)
Q Consensus       170 ~~~~~~~L~l~-~~~~~~g~V~al~~~~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD  247 (415)
                           ..++.+ ........+.++.. .+.+|+. +..+.+.+|+....  +.++...-+......+.....+.+|+.|.
T Consensus       272 -----~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~--~~~~~~~gh~~~v~~l~~spdg~~l~s~s  343 (611)
T 1nr0_A          272 -----KVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPELG--SIDQVRYGHNKAITALSSSADGKTLFSAD  343 (611)
T ss_dssp             -----EEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -----ceeeeecCCCCccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCC--CcceEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence                 011111 00112233334333 4543444 45566888987642  22322222333334444445678999999


Q ss_pred             cCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      .-..+.++  +...+....+-.+.....+.++.+-+++.++.+-.++.+.++...
T Consensus       344 ~D~~v~~W--d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          344 AEGHINSW--DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             TTSCEEEE--ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             CCCcEEEE--ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence            88888654  555555555544556778888888877778888788888877654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.43  E-value=2.1  Score=41.61  Aligned_cols=111  Identities=13%  Similarity=0.249  Sum_probs=66.4

Q ss_pred             EecCCceEEEee--eCCceEEE-EeC---CeEEEEeeCCCCccceeeeeeeccceEEEEE--EEeCCEEEEee--cCCcE
Q 014962          183 TTWPGMVLAICP--YLDRYFLA-SAG---NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL--TAHFTRIAVGD--CRDGI  252 (415)
Q Consensus       183 ~~~~g~V~al~~--~~g~yLl~-~vg---~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI--~~~~n~IlVGD--~~~Sv  252 (415)
                      ....++|.+++-  ..+. +++ +.|   ..|.+|++...  +.+....   ....+.++  ...++.++++.  .-..+
T Consensus       273 ~~~~~~V~~~~~~p~~~~-~la~~~gs~D~~I~iwd~~t~--~~~~~~~---~~~~v~~~~~~~~~~~lv~~sg~~d~~I  346 (420)
T 4gga_A          273 TQHQGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSG--ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQL  346 (420)
T ss_dssp             CCCSSCEEEEEECTTCTT-EEEEEECTTTCEEEEEETTTT--EEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred             cccCCceeeeeeCCCccc-EEEEEeecCCCEEEEEeCCcc--ccceeec---cccceeeeeecCCCCeEEEEEecCCCEE
Confidence            456788888774  3455 544 444   46999999752  3333322   22233444  34567777754  44566


Q ss_pred             EEEEEEccCCeE-EEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          253 LFYSYHEDARKL-EQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       253 ~ll~y~~~~~~L-~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      .++.+  ...+. ..+.  .+...|+++.|- |...++.+..+|.|.+.++.+
T Consensus       347 ~iwd~--~~~~~v~~l~--gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          347 VIWKY--PTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEEET--TTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEC--CCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            66544  33333 3332  245678888886 445788888999999998654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.43  E-value=0.91  Score=43.75  Aligned_cols=115  Identities=4%  Similarity=0.027  Sum_probs=69.6

Q ss_pred             cCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeecc-------ceEEEEEEEeCCEEEEeecCCcEEEE
Q 014962          185 WPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRT-------RFMIMLLTAHFTRIAVGDCRDGILFY  255 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~-------~~~i~sI~~~~n~IlVGD~~~Sv~ll  255 (415)
                      ..++|.+|+-. .|.+|+.+ -...|.+|++...  +.+........       ....+.....+.++++|..-..+.++
T Consensus       248 h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw  325 (380)
T 3iz6_a          248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW  325 (380)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred             cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence            46788888754 45634433 2346999999862  22322111100       12334445578899999887777665


Q ss_pred             EEEccCCeEE-EEec--CCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          256 SYHEDARKLE-QIYC--DPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       256 ~y~~~~~~L~-~var--D~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                        +....+.. .+..  ......|+++.|-. ...++.+..+|.|.+..+..
T Consensus       326 --d~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          326 --DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             --ETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             --ECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence              54443332 3322  34556788888754 45788889999999998653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.42  E-value=1.3  Score=40.63  Aligned_cols=72  Identities=8%  Similarity=0.036  Sum_probs=46.5

Q ss_pred             EEEEeCCC------ccCEEEEecCCCEEEEEEEee--CCCc---ceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC
Q 014962            9 VRKFHLGG------TPKKVLYHSESRLLIVMRTEL--NNDT---CSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG   77 (415)
Q Consensus         9 i~~i~L~~------tp~~I~y~~~~~~~~v~~~~~--~~~~---~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~   77 (415)
                      +++++++.      .|+.++++|+.+.++++....  ....   ....|.++|..+++.+..+...  ..+.++.   +.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~---~s  143 (337)
T 1pby_B           69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLA---WA  143 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEE---EC
T ss_pred             EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeE---EC
Confidence            45677766      899999999998777775321  1111   2368999999999888777653  3333332   33


Q ss_pred             -CeeEEEEe
Q 014962           78 -HEQVLVVG   85 (415)
Q Consensus        78 -~~~~lvVG   85 (415)
                       +..+++++
T Consensus       144 ~dg~~l~~~  152 (337)
T 1pby_B          144 RDGSKLYGL  152 (337)
T ss_dssp             TTSSCEEEE
T ss_pred             CCCCEEEEe
Confidence             44555555

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.37  E-value=1  Score=43.13  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc
Q 014962          196 LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR  274 (415)
Q Consensus       196 ~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~  274 (415)
                      .|. |.++. +..|+.++.... ..+++. ..   . ....+...++.|++++....+  +.|+...+++.--.......
T Consensus       239 ~~~-v~~~~~~g~l~~~d~~tG-~~~w~~-~~---~-~~~~~~~~~~~l~~~~~~g~l--~~~d~~tG~~~w~~~~~~~~  309 (376)
T 3q7m_A          239 NGV-VFALAYNGNLTALDLRSG-QIMWKR-EL---G-SVNDFIVDGNRIYLVDQNDRV--MALTIDGGVTLWTQSDLLHR  309 (376)
T ss_dssp             TTE-EEEECTTSCEEEEETTTC-CEEEEE-CC---C-CEEEEEEETTEEEEEETTCCE--EEEETTTCCEEEEECTTTTS
T ss_pred             CCE-EEEEecCcEEEEEECCCC-cEEeec-cC---C-CCCCceEECCEEEEEcCCCeE--EEEECCCCcEEEeecccCCC
Confidence            455 66554 567888887642 112222 11   1 134456679999999876665  66777766654333322222


Q ss_pred             eeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962          275 LVADCVLMDVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       275 ~vta~~~Ld~d~~l~aD~~gNl~vl~~  301 (415)
                      ... .-.+.++.+++++.+|.|+++..
T Consensus       310 ~~~-~~~~~~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          310 LLT-SPVLYNGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             CCC-CCEEETTEEEEECTTSEEEEEET
T ss_pred             ccc-CCEEECCEEEEEeCCCeEEEEEC
Confidence            222 22346788888999999998883

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=95.28  E-value=0.31  Score=47.27  Aligned_cols=77  Identities=9%  Similarity=0.085  Sum_probs=45.2

Q ss_pred             CceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccc---------------eEEEEEEEeCCEEEEeecCC
Q 014962          187 GMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR---------------FMIMLLTAHFTRIAVGDCRD  250 (415)
Q Consensus       187 g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~---------------~~i~sI~~~~n~IlVGD~~~  250 (415)
                      ++|.+++-- .|++|+++..+.|.+|++..+. +.+.....+...               .+.......+.+|+.|..-.
T Consensus       286 ~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg  364 (447)
T 3dw8_B          286 SSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN-RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN  364 (447)
T ss_dssp             TCEEEEEECTTSSEEEEEESSEEEEEETTCCS-SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT
T ss_pred             ceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc-cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC
Confidence            478888743 4676777766889999997532 223332222100               11144556678888888877


Q ss_pred             cEEEEEEEccCCeEEE
Q 014962          251 GILFYSYHEDARKLEQ  266 (415)
Q Consensus       251 Sv~ll~y~~~~~~L~~  266 (415)
                      .|.++  +...++...
T Consensus       365 ~v~iw--d~~~~~~~~  378 (447)
T 3dw8_B          365 FFRMF--DRNTKRDIT  378 (447)
T ss_dssp             EEEEE--ETTTCCEEE
T ss_pred             EEEEE--EcCCCccee
Confidence            77665  444444433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.20  E-value=1.8  Score=44.61  Aligned_cols=50  Identities=14%  Similarity=0.086  Sum_probs=41.3

Q ss_pred             eEEEEeCCCccCEEEEec----CCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC
Q 014962            8 NVRKFHLGGTPKKVLYHS----ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE   63 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~----~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~   63 (415)
                      .+++++.+..|+.++++|    +.+.++++..      +...|.++|..|++.+..+...
T Consensus       214 ~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~------~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          214 KVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             EEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEecCCCcceEEeCCCcCCCCCEEEEEEc------cCCeEEEEeccccccceeeccc
Confidence            357889999999999999    9998887753      2356999999999999888763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.20  E-value=2  Score=40.18  Aligned_cols=62  Identities=21%  Similarity=0.386  Sum_probs=41.0

Q ss_pred             CEEEEeecCCcEEEEEEEccCCeEEEE-ecCCCcceeEEEEeeeC-----CeEEEeCCCCcEEEEecCC
Q 014962          241 TRIAVGDCRDGILFYSYHEDARKLEQI-YCDPSQRLVADCVLMDV-----DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       241 n~IlVGD~~~Sv~ll~y~~~~~~L~~v-arD~~~~~vta~~~Ld~-----d~~l~aD~~gNl~vl~~~~  303 (415)
                      .+++.|..-..+.++..+.. +.+..+ .-..+..+|.++.|-.+     ..++.+..+|.|.++....
T Consensus       180 ~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          180 KRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             ceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            57888888888888776432 222111 12235568888888532     4688889999999998643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.13  E-value=2.4  Score=40.47  Aligned_cols=118  Identities=11%  Similarity=0.020  Sum_probs=67.2

Q ss_pred             ecCCceEEEeee-CCceEEEEe-CCe-EEEEeeCCCCccceeeeee--eccceEEEEEEEeCCEEEEeecCCcEEEEEEE
Q 014962          184 TWPGMVLAICPY-LDRYFLASA-GNA-FYVCGFPNDNPQRVRRFAV--GRTRFMIMLLTAHFTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       184 ~~~g~V~al~~~-~g~yLl~~v-g~~-l~v~~~~~~~~~~L~~~a~--~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~  258 (415)
                      .-.++|.+|+-- +|++|+.|. ... |.+|++..  .+.+.....  +............+++++.|..-..+.++.++
T Consensus       193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~--~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED--GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT--CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC--CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            457889998833 567455443 344 89999985  233444331  33334444445567899999888888887765


Q ss_pred             ccC-CeEEE-----EecCCCcce--------------eEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962          259 EDA-RKLEQ-----IYCDPSQRL--------------VADCVLMDVD-TAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       259 ~~~-~~L~~-----varD~~~~~--------------vta~~~Ld~d-~~l~aD~~gNl~vl~~~~  303 (415)
                      ... ++...     +.+-+...|              ...+.+-.++ .++++..+|.+.++.+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            321 11111     111111222              1334444333 677788888888877644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.11  E-value=2.4  Score=40.42  Aligned_cols=115  Identities=11%  Similarity=0.024  Sum_probs=70.0

Q ss_pred             cCCceEEEee--e-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962          185 WPGMVLAICP--Y-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       185 ~~g~V~al~~--~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      -.+.|.+++-  - .|.+|+.+ ....|++|++...  +.+.....+......+.....+++++.|..-..+.++..+. 
T Consensus       195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-  271 (354)
T 2pbi_B          195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-  271 (354)
T ss_dssp             CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-
T ss_pred             CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-
Confidence            3566777653  2 35535543 4567999999762  33433333333333444444678999999888887764432 


Q ss_pred             CCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962          261 ARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       261 ~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~  302 (415)
                      ...+..+..+.....++++.|- +...++++..+|.|.++...
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          272 DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence            2233444444444567777775 34577888899999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.94  E-value=2.1  Score=38.88  Aligned_cols=191  Identities=13%  Similarity=0.088  Sum_probs=107.3

Q ss_pred             EEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCC-CeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCC
Q 014962           21 VLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGE   99 (415)
Q Consensus        21 I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~-E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e   99 (415)
                      |.+++. ++++|+. +       ..|+|-|..|++.+..+++... ..|.|+..  ..+..+++.|..            
T Consensus        31 l~WS~~-~~lAvg~-D-------~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~--~~~~~~l~sgs~------------   87 (318)
T 4ggc_A           31 VDWSSG-NVLAVAL-D-------NSVYLWSASSGDILQLLQMEQPGEYISSVAW--IKEGNYLAVGTS------------   87 (318)
T ss_dssp             EEECTT-SEEEEEE-T-------TEEEEEETTTCCEEEEEECCSTTCCEEEEEE--CTTSSEEEEEET------------
T ss_pred             EEECCC-CEEEEEe-C-------CEEEEEECCCCCEEEEEEecCCCCeEEEEEE--CCCCCEEEEEEC------------
Confidence            556654 4666553 2       3599999999999998888764 34555432  235588998855            


Q ss_pred             ccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEE
Q 014962          100 AESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRL  179 (415)
Q Consensus       100 ~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l  179 (415)
                          -|.|.+|++..                                                           +..++.
T Consensus        88 ----Dg~v~iw~~~~-----------------------------------------------------------~~~~~~  104 (318)
T 4ggc_A           88 ----SAEVQLWDVQQ-----------------------------------------------------------QKRLRN  104 (318)
T ss_dssp             ----TSEEEEEETTT-----------------------------------------------------------TEEEEE
T ss_pred             ----CCcEEEeecCC-----------------------------------------------------------ceeEEE
Confidence                46788887762                                                           011221


Q ss_pred             EEEEecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEE
Q 014962          180 AYSTTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       180 ~~~~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~  258 (415)
                      .  ..-...+.++... +.+|+.+.... +.++...... ..+.....+............+++++.|..-..+.++...
T Consensus       105 ~--~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          105 M--TSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             E--ECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             e--cCccceEEEeecC-CCEEEEEecCCceEeeecCCCc-eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            1  2334556665544 55355444443 4555554421 2233323333344455555677899999988888776543


Q ss_pred             ccCCe-EEEEecCCCcceeEEEEeeeCC-e---EEEeCCCCcEEEEec
Q 014962          259 EDARK-LEQIYCDPSQRLVADCVLMDVD-T---AVVSDRKGSIAVLSC  301 (415)
Q Consensus       259 ~~~~~-L~~varD~~~~~vta~~~Ld~d-~---~l~aD~~gNl~vl~~  301 (415)
                      ..+.. ............+.++.+...+ .   +..++.++.+.+...
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~  228 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  228 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence            32211 1112222334456666665433 2   234567788877764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.82  E-value=2.6  Score=39.30  Aligned_cols=166  Identities=15%  Similarity=0.067  Sum_probs=98.8

Q ss_pred             EEEEeCCCc--cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEee
Q 014962            9 VRKFHLGGT--PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT   86 (415)
Q Consensus         9 i~~i~L~~t--p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT   86 (415)
                      ++.+|....  -.-+.|++  +.+.+.+...    ..|.|+.+|+.|++++.++.+++.--...+...   ++..++ .|
T Consensus        12 ~~~~phd~~~ftqGL~~~~--~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~---~~~ly~-lt   81 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR--GHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW---RDRLIQ-LT   81 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET--TEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEE-EE
T ss_pred             EEEcCCCCccccccEEEEC--CEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcceeEEEEe---CCEEEE-EE
Confidence            344555442  23566666  4444444221    257899999999999999999876544444433   333333 34


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      -               ..+++++|+..                                                     
T Consensus        82 w---------------~~~~v~v~D~~-----------------------------------------------------   93 (243)
T 3mbr_X           82 W---------------RNHEGFVYDLA-----------------------------------------------------   93 (243)
T ss_dssp             S---------------SSSEEEEEETT-----------------------------------------------------
T ss_pred             e---------------eCCEEEEEECC-----------------------------------------------------
Confidence            3               14566666655                                                     


Q ss_pred             ccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccce---EEEEEEEeCCE
Q 014962          167 IKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRF---MIMLLTAHFTR  242 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~---~i~sI~~~~n~  242 (415)
                               .++++.+-+..+.-.+||.-.++ |+++-|.. |++++...  -+.++.....+.+.   .+..|...+.+
T Consensus        94 ---------tl~~~~ti~~~~~Gwglt~dg~~-L~vSdgs~~l~~iDp~t--~~~~~~I~V~~~g~~~~~lNeLe~~~G~  161 (243)
T 3mbr_X           94 ---------TLTPRARFRYPGEGWALTSDDSH-LYMSDGTAVIRKLDPDT--LQQVGSIKVTAGGRPLDNLNELEWVNGE  161 (243)
T ss_dssp             ---------TTEEEEEEECSSCCCEEEECSSC-EEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEETTE
T ss_pred             ---------cCcEEEEEeCCCCceEEeeCCCE-EEEECCCCeEEEEeCCC--CeEEEEEEEccCCcccccceeeEEeCCE
Confidence                     23444444455555677766566 88876644 77777764  23344434333222   45667777889


Q ss_pred             EEEeecCCcEEEEEEEccCCeEE
Q 014962          243 IAVGDCRDGILFYSYHEDARKLE  265 (415)
Q Consensus       243 IlVGD~~~Sv~ll~y~~~~~~L~  265 (415)
                      |++..-+.- .+++.|+..++..
T Consensus       162 lyanvw~s~-~I~vIDp~tG~V~  183 (243)
T 3mbr_X          162 LLANVWLTS-RIARIDPASGKVV  183 (243)
T ss_dssp             EEEEETTTT-EEEEECTTTCBEE
T ss_pred             EEEEECCCC-eEEEEECCCCCEE
Confidence            998885543 5677888776543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.81  E-value=2.3  Score=38.64  Aligned_cols=115  Identities=10%  Similarity=-0.001  Sum_probs=67.6

Q ss_pred             CCceEEEee----eCCceEEEEeCCeEEEEeeCCCCccceeee-eeeccceEEEEEEE--eC----CEEEEeecCCcEEE
Q 014962          186 PGMVLAICP----YLDRYFLASAGNAFYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTA--HF----TRIAVGDCRDGILF  254 (415)
Q Consensus       186 ~g~V~al~~----~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~-a~~~~~~~i~sI~~--~~----n~IlVGD~~~Sv~l  254 (415)
                      .+.+.+++-    +.+.+|+++......+|.....+  .+... .+......|.++..  .+    ++++.|..-..+.+
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            345666653    23665777777776666665432  12111 11112224555554  44    57888998888988


Q ss_pred             EEEEccCC--------------------------------------------eEEEEecCCCcceeEEEEeee-CCeEEE
Q 014962          255 YSYHEDAR--------------------------------------------KLEQIYCDPSQRLVADCVLMD-VDTAVV  289 (415)
Q Consensus       255 l~y~~~~~--------------------------------------------~L~~varD~~~~~vta~~~Ld-~d~~l~  289 (415)
                      +..+....                                            ++...-+ .....|+++.+-. ...++.
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEE
Confidence            88775310                                            1111111 2345688888853 457888


Q ss_pred             eCCCCcEEEEecCC
Q 014962          290 SDRKGSIAVLSCSD  303 (415)
Q Consensus       290 aD~~gNl~vl~~~~  303 (415)
                      +..+|.|.++++..
T Consensus       324 ~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          324 AGDDGKVRLWKATY  337 (351)
T ss_dssp             EETTSCEEEEEECT
T ss_pred             ecCCCcEEEEecCc
Confidence            89999999999764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.76  E-value=3.1  Score=39.93  Aligned_cols=114  Identities=9%  Similarity=0.058  Sum_probs=68.2

Q ss_pred             CCceEEEee--eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          186 PGMVLAICP--YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       186 ~g~V~al~~--~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      .+.|.+++-  .++.+|+.+ ....|.+|++.... +.++....+......+.....+++++.|..-..+.++  +...+
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lw--d~~~~  281 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF--DMRTG  281 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEE--ETTTT
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEE--ECCCC
Confidence            456777763  356634433 34669999997422 2233323333333444444567788888887888665  44444


Q ss_pred             eEE-EEecC-----CCcceeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962          263 KLE-QIYCD-----PSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       263 ~L~-~varD-----~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~  302 (415)
                      +.. .+...     ....+++++.|- +...++++..+|.|.++...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            333 33222     222357788875 45578888999999999853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.72  E-value=2.3  Score=44.59  Aligned_cols=116  Identities=12%  Similarity=0.072  Sum_probs=73.7

Q ss_pred             EecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962          183 TTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       183 ~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      ....+.|.+++-- .|++|+.+ ....|++|++..  .+.++....+......+.....+++|+.|..-..+.++  +..
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw--d~~  502 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW--NTL  502 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE--CTT
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE--ECC
Confidence            3456788888744 46645444 346799999975  23344433333343444444567789999888888665  443


Q ss_pred             CCeEEEEec--CCCcceeEEEEeeeC---CeEEEeCCCCcEEEEecC
Q 014962          261 ARKLEQIYC--DPSQRLVADCVLMDV---DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       261 ~~~L~~var--D~~~~~vta~~~Ld~---d~~l~aD~~gNl~vl~~~  302 (415)
                      ......+..  ..+..+|+++.|-.+   ..++.+..+|.|.++...
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~  549 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS  549 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence            333333332  345667888888643   368888999999999864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.63  E-value=3  Score=39.26  Aligned_cols=206  Identities=12%  Similarity=0.017  Sum_probs=117.0

Q ss_pred             eEEEEeCCCc--cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEe
Q 014962            8 NVRKFHLGGT--PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVG   85 (415)
Q Consensus         8 ~i~~i~L~~t--p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVG   85 (415)
                      -++++|++..  |+-++|+++. .+.+++..    ...+.|+.+|+.|++++.++.++.+.....+...   ++. +.+.
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~----~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~-lyv~   81 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGL----YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEK-LYQV   81 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTT-EEEEEECS----TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTE-EEEE
T ss_pred             EEEEEECCCCCCcccEEEeCCC-eEEEECCC----CCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCE-EEEE
Confidence            4688999974  7899999984 55555432    2247899999999999999999887666655443   333 3344


Q ss_pred             eecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCC
Q 014962           86 TSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCD  165 (415)
Q Consensus        86 T~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  165 (415)
                      |-               ..|++.+|+..                                                    
T Consensus        82 t~---------------~~~~v~viD~~----------------------------------------------------   94 (266)
T 2iwa_A           82 VW---------------LKNIGFIYDRR----------------------------------------------------   94 (266)
T ss_dssp             ET---------------TCSEEEEEETT----------------------------------------------------
T ss_pred             Ee---------------cCCEEEEEECC----------------------------------------------------
Confidence            33               14566665544                                                    


Q ss_pred             CccccccccceEEEEEEEecC-CceEEEeeeCCceEEEEeC-CeEEEEeeCCCCccceeeeeeecc--ce-EEEEEEEeC
Q 014962          166 GIKLEETETWQLRLAYSTTWP-GMVLAICPYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRT--RF-MIMLLTAHF  240 (415)
Q Consensus       166 g~~~~~~~~~~L~l~~~~~~~-g~V~al~~~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~--~~-~i~sI~~~~  240 (415)
                                .++++.+-++. +.-..|+.=.++ |+++-| ++|.+++...  .+.++.......  +. .+..+...+
T Consensus        95 ----------t~~v~~~i~~g~~~g~glt~Dg~~-l~vs~gs~~l~viD~~t--~~v~~~I~Vg~~~~p~~~~nele~~d  161 (266)
T 2iwa_A           95 ----------TLSNIKNFTHQMKDGWGLATDGKI-LYGSDGTSILYEIDPHT--FKLIKKHNVKYNGHRVIRLNELEYIN  161 (266)
T ss_dssp             ----------TTEEEEEEECCSSSCCEEEECSSS-EEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEET
T ss_pred             ----------CCcEEEEEECCCCCeEEEEECCCE-EEEECCCCeEEEEECCC--CcEEEEEEECCCCcccccceeEEEEC
Confidence                      12223333333 333456653345 777755 4577777754  233333332221  11 244555557


Q ss_pred             CEEEEeecCCcEEEEEEEccCCeEEEEec----------CCCc-ceeEEEEeeeC--CeEEEe-CCCCcEEEEecCC
Q 014962          241 TRIAVGDCRDGILFYSYHEDARKLEQIYC----------DPSQ-RLVADCVLMDV--DTAVVS-DRKGSIAVLSCSD  303 (415)
Q Consensus       241 n~IlVGD~~~Sv~ll~y~~~~~~L~~var----------D~~~-~~vta~~~Ld~--d~~l~a-D~~gNl~vl~~~~  303 (415)
                      .++++...... .+...|+..++....-.          +..+ ..+.....++.  +.++++ -..+++++.++.+
T Consensus       162 g~lyvn~~~~~-~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          162 GEVWANIWQTD-CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TEEEEEETTSS-EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CEEEEecCCCC-eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            78888875543 46777887664422211          1111 12333333443  355444 4577799988654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=94.14  E-value=3.4  Score=37.85  Aligned_cols=112  Identities=5%  Similarity=-0.009  Sum_probs=61.0

Q ss_pred             ecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEe-CCEEEEeecCCcEEEEEEEcc
Q 014962          184 TWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       184 ~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~-~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      .-.++|++|+-- .|++|+.+ ..+.|.+|++...  +.+....   ..-.+..+... ++++++|..-.++.++  +.+
T Consensus       213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~---~~~~v~~~~~~~~~~~~~~~~d~~i~iw--d~~  285 (340)
T 4aow_A          213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIW--DLE  285 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEE---CSSCEEEEEECSSSSEEEEEETTEEEEE--ETT
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--ceeeeec---CCceEEeeecCCCCceeeccCCCEEEEE--ECC
Confidence            346789988733 46645443 3357999999862  3333322   12234444332 2334444434444433  333


Q ss_pred             CCeEEE--------EecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          261 ARKLEQ--------IYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       261 ~~~L~~--------varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      ...+..        ......+.+|+++.|-.+ ..++.+..+|.|.+++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            332222        222345668888888543 477888999999998854

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.94  E-value=3.8  Score=37.69  Aligned_cols=211  Identities=10%  Similarity=0.107  Sum_probs=114.1

Q ss_pred             eEEEEeCCCccCE-EEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEe
Q 014962            8 NVRKFHLGGTPKK-VLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVG   85 (415)
Q Consensus         8 ~i~~i~L~~tp~~-I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVG   85 (415)
                      ..+.++.+..|.. ++++|+.+.+++.. ..   .....|.++|..+++.+..+...  ..+.   .+.+. +..++++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~---~~~~~i~v~d~~~~~~~~~~~~~--~~~~---~~~~spdg~~l~~~  145 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVT-GL---NHPFNMQSYSFLKNKFISTIPIP--YDAV---GIAISPNGNGLILI  145 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECC-CS---SSSCEEEEEETTTTEEEEEEECC--TTEE---EEEECTTSSCEEEE
T ss_pred             eEEecccCCCCccceEECCCCCEEEEec-CC---CCcccEEEEECCCCCeEEEEECC--CCcc---ceEECCCCCEEEEE
Confidence            3677788888999 99999998777321 11   01127999999999988876653  3343   33343 33445554


Q ss_pred             eecCCCCCCCCCCCccccccE-EEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCC
Q 014962           86 TSLSSGPAIMPSGEAESTKGR-LIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC  164 (415)
Q Consensus        86 T~~~~~~~~~~~~e~~~~~Gr-i~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  164 (415)
                      ...               .++ |.+|++..                                             +    
T Consensus       146 ~~~---------------~~~~i~~~~~~~---------------------------------------------~----  161 (331)
T 3u4y_A          146 DRS---------------SANTVRRFKIDA---------------------------------------------D----  161 (331)
T ss_dssp             EET---------------TTTEEEEEEECT---------------------------------------------T----
T ss_pred             ecC---------------CCceEEEEEECC---------------------------------------------C----
Confidence            331               245 88888872                                             0    


Q ss_pred             CCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccc---eeeeeeeccceEEEEEEE
Q 014962          165 DGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQR---VRRFAVGRTRFMIMLLTA  238 (415)
Q Consensus       165 ~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~---L~~~a~~~~~~~i~sI~~  238 (415)
                       |. +     .... .........+.+++-- .|++|+++.  ++.|.+|++...  +.   +..... .....-..+..
T Consensus       162 -g~-~-----~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~--~~~~~~~~~~~-~~~~~~~~~sp  230 (331)
T 3u4y_A          162 -GV-L-----FDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP--ENITLLNAVGT-NNLPGTIVVSR  230 (331)
T ss_dssp             -CC-E-----EEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST--TSCEEEEEEEC-SSCCCCEEECT
T ss_pred             -Cc-E-----eecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC--cccceeeeccC-CCCCceEEECC
Confidence             10 0     0111 1111333445555532 466566654  567999998752  33   322221 11222334455


Q ss_pred             eCCEEEEeecCCcEEEEEEEccCCeEEEEe-------cCCCccee-EEEEee-eCCeEEE-eCCCCcEEEEecCC
Q 014962          239 HFTRIAVGDCRDGILFYSYHEDARKLEQIY-------CDPSQRLV-ADCVLM-DVDTAVV-SDRKGSIAVLSCSD  303 (415)
Q Consensus       239 ~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va-------rD~~~~~v-ta~~~L-d~d~~l~-aD~~gNl~vl~~~~  303 (415)
                      .+.++++++....- +..|+.+.+++..+.       .+..+... .++.|- |...+++ +...+.+.+++...
T Consensus       231 dg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          231 DGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCCEEEEEEcCCCE-EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            67888888764432 455787777763332       12222222 223443 2334444 44556788888643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=93.93  E-value=3.5  Score=37.31  Aligned_cols=115  Identities=10%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             EecCCceEEEeee--CCceEEEEeCC---eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEee--cCCcEEEE
Q 014962          183 TTWPGMVLAICPY--LDRYFLASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD--CRDGILFY  255 (415)
Q Consensus       183 ~~~~g~V~al~~~--~g~yLl~~vg~---~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD--~~~Sv~ll  255 (415)
                      ....++|.++...  .+..+.++.|.   .|.+|+....  ..... ...............++.++++-  .-..+.+ 
T Consensus       193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i-  268 (318)
T 4ggc_A          193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVI-  268 (318)
T ss_dssp             CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC--CEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEE-
T ss_pred             cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc--ccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEE-
Confidence            4456788877744  34523344443   4889988752  22222 33333444555555677776643  3445654 


Q ss_pred             EEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          256 SYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       256 ~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                       |+...+++...-+ .+...|+++.|-. ...++.+..+|.|.+.++.+
T Consensus       269 -wd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          269 -WKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             -EETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             -EECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence             4554444433322 2456789988864 44788889999999998644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.93  E-value=11  Score=42.87  Aligned_cols=113  Identities=12%  Similarity=0.192  Sum_probs=72.6

Q ss_pred             ecCCceEEEeee--C---CceEEEEe-----------CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEee
Q 014962          184 TWPGMVLAICPY--L---DRYFLASA-----------GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD  247 (415)
Q Consensus       184 ~~~g~V~al~~~--~---g~yLl~~v-----------g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD  247 (415)
                      +-+-.|.+++..  .   ..||++|.           ..++++|++.+   ..|+.+......-.+++|...++++++| 
T Consensus       826 ~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~v~g~v~al~~~~g~Lla~-  901 (1158)
T 3ei3_A          826 LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKEVKGAVYSMVEFNGKLLAS-  901 (1158)
T ss_dssp             CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEEESSCEEEEEEETTEEEEE-
T ss_pred             CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEEcCCcCEEEeeeCCEEEEE-
Confidence            344557777743  2   24588876           24588998873   3455555444455688899999998887 


Q ss_pred             cCCcEEEEEEEccCCeEEEEecCCCcceeEEEEe-eeCCeEEEeCCCCcEEEEecCC
Q 014962          248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL-MDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~-Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +-+.+.++.|..++ .|..-++.+..  +++... ...+.++++|....++++++.+
T Consensus       902 ig~~l~vy~l~~~~-~L~~~~~~~~~--i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~  955 (1158)
T 3ei3_A          902 INSTVRLYEWTTEK-ELRTECNHYNN--IMALYLKTKGDFILVGDLMRSVLLLAYKP  955 (1158)
T ss_dssp             ETTEEEEEEECTTS-CEEEEEEECCC--SCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred             cCCEEEEEECCCCc-eEEEEeecccc--EEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence            45778888887543 34422332221  222222 2467899999999999999865

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=93.74  E-value=4.1  Score=37.44  Aligned_cols=105  Identities=8%  Similarity=0.023  Sum_probs=62.6

Q ss_pred             CceEEEE-eCCeEEEEeeCCCCcc--ceeeeeeeccceEEEEEEE--e---CCEEEEeecCCcEEEEEEEccCC--eEEE
Q 014962          197 DRYFLAS-AGNAFYVCGFPNDNPQ--RVRRFAVGRTRFMIMLLTA--H---FTRIAVGDCRDGILFYSYHEDAR--KLEQ  266 (415)
Q Consensus       197 g~yLl~~-vg~~l~v~~~~~~~~~--~L~~~a~~~~~~~i~sI~~--~---~n~IlVGD~~~Sv~ll~y~~~~~--~L~~  266 (415)
                      +++|+.| ..+.|.+|++......  .+.....+.  -.|.++.-  .   +++++.|..-..+.++..+....  ....
T Consensus       170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~--~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~  247 (297)
T 2pm7_B          170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL  247 (297)
T ss_dssp             CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred             cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC--CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence            4535544 4567999999753211  111111122  23555553  3   35788888888998887765332  2233


Q ss_pred             EecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          267 IYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       267 varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +.....+.++.++.|- +...++.+..+|.+.+++.+.
T Consensus       248 ~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            3223446678888885 445777888899999998653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=93.36  E-value=4.7  Score=37.87  Aligned_cols=113  Identities=8%  Similarity=0.052  Sum_probs=71.5

Q ss_pred             ecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962          184 TWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       184 ~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      .-.++|.+++-- .|.+|+.+ ....|.+|++...  +.++....+......+.....+++|+.|..-..+.++...  .
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~--~  149 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL--G  149 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS--S
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc--C
Confidence            346788888744 35634433 3467999999762  3444434344444455555678899999988888776543  2


Q ss_pred             CeEEEEe-cCCCcceeEEEEeeeC-----------CeEEEeCCCCcEEEEe
Q 014962          262 RKLEQIY-CDPSQRLVADCVLMDV-----------DTAVVSDRKGSIAVLS  300 (415)
Q Consensus       262 ~~L~~va-rD~~~~~vta~~~Ld~-----------d~~l~aD~~gNl~vl~  300 (415)
                      ....... ......++.++.+-..           ..++.+..+|.|.++.
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  200 (343)
T 2xzm_R          150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN  200 (343)
T ss_dssp             CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred             CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence            2222222 2245567888887533           3578888899999887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=93.31  E-value=4.5  Score=36.57  Aligned_cols=108  Identities=8%  Similarity=0.080  Sum_probs=57.8

Q ss_pred             ceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEe-CCEEEEeecCCcEEEEEEEccCCe
Q 014962          188 MVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       188 ~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~-~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      .+.+|+-- +|+ |+++-  +++|++|+...   +.+...........+..|... .+.|+|+|....- +..|+.+...
T Consensus       122 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~g~~  196 (286)
T 1q7f_A          122 HPRGVTVDNKGR-IIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYEGQY  196 (286)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEETTCCE
T ss_pred             CceEEEEeCCCC-EEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcCCCCE
Confidence            35555532 567 66653  46788888643   334332211111134555543 3468999875432 4667776666


Q ss_pred             EEEEecCCCcceeEEEEeeeCCeEEEeCCCC--cEEEEe
Q 014962          264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKG--SIAVLS  300 (415)
Q Consensus       264 L~~varD~~~~~vta~~~Ld~d~~l~aD~~g--Nl~vl~  300 (415)
                      +..+..+....+..++.+-.++.++++|...  .|.++.
T Consensus       197 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          197 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence            6666654333445555443334666666543  466665

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.16  E-value=4.6  Score=42.45  Aligned_cols=196  Identities=15%  Similarity=0.114  Sum_probs=113.1

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe---EEEEEEEEEC-CeeEEEEeeecCCC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET---GKSMELVRVG-HEQVLVVGTSLSSG   91 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~---~~si~~~~l~-~~~~lvVGT~~~~~   91 (415)
                      .....++++|+.+.++++..+.       .+++.|..+  .+..  ++ ++.   -.++..+.|. +..+|++|+.    
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg-------~V~iwd~~~--~l~~--l~-~~~~~~~~sv~svafSPDG~~LAsgs~----  149 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNG-------NVSVFKDNK--MLTN--LD-SKGNLSSRTYHCFEWNPIESSIVVGNE----  149 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTS-------CEEEEETTE--EEEE--CC-CSSCSTTTCEEEEEECSSSSCEEEEET----
T ss_pred             CcEEEEEECCCCCEEEEEeCCC-------cEEEEeCCc--eeee--cc-CCCccccccEEEEEEcCCCCEEEEEcC----
Confidence            4567888999998888876443       488888544  4443  33 332   0123355554 5689999965    


Q ss_pred             CCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccc
Q 014962           92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE  171 (415)
Q Consensus        92 ~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~  171 (415)
                                  -|.|.+|++..                                                   |. +. 
T Consensus       150 ------------DGtVkIWd~~~---------------------------------------------------~~-l~-  164 (588)
T 2j04_A          150 ------------DGELQFFSIRK---------------------------------------------------NS-EN-  164 (588)
T ss_dssp             ------------TSEEEEEECCC---------------------------------------------------CT-TT-
T ss_pred             ------------CCEEEEEECCC---------------------------------------------------Cc-cc-
Confidence                        57899999872                                                   00 00 


Q ss_pred             cccceEEEEEEE-----ecCCceEEEeeeCCceEEE-EeCCeEEEEeeCCCCcc-ceeeeeeeccceEEEEEEEeCCEEE
Q 014962          172 TETWQLRLAYST-----TWPGMVLAICPYLDRYFLA-SAGNAFYVCGFPNDNPQ-RVRRFAVGRTRFMIMLLTAHFTRIA  244 (415)
Q Consensus       172 ~~~~~L~l~~~~-----~~~g~V~al~~~~g~yLl~-~vg~~l~v~~~~~~~~~-~L~~~a~~~~~~~i~sI~~~~n~Il  244 (415)
                        ..++-++..-     .-.+.|++++-..+. |++ +.++.+++|++...... .++.... .....|.++.-.+++|+
T Consensus       165 --~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~svaFsg~~LA  240 (588)
T 2j04_A          165 --TPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITDLKIVDYKVV  240 (588)
T ss_dssp             --CCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCCEEEETTEEE
T ss_pred             --cccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEEEEEECCEEE
Confidence              0121222221     124689999877666 554 45667999999763210 0111110 11234444444477877


Q ss_pred             EeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-C--eEEEeCCCCcEEEEec
Q 014962          245 VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-D--TAVVSDRKGSIAVLSC  301 (415)
Q Consensus       245 VGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d--~~l~aD~~gNl~vl~~  301 (415)
                      ++. .+.|  .-|+...+++...-.. +...+..+.|.|. +  .++.|+.+|- .+...
T Consensus       241 Sa~-~~tI--kLWd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          241 LTC-PGYV--HKIDLKNYSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             EEC-SSEE--EEEETTTTEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             EEe-CCeE--EEEECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            764 4656  4456666777444433 6667777777432 2  5888888888 44443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=92.65  E-value=6.3  Score=36.49  Aligned_cols=65  Identities=14%  Similarity=0.095  Sum_probs=43.4

Q ss_pred             EEEeCCC--ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEee
Q 014962           10 RKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT   86 (415)
Q Consensus        10 ~~i~L~~--tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT   86 (415)
                      .+++.+.  .++.+...|+.++++  +.       ...|..+|+ +++.+..+.......+.++.  .+.+..+++...
T Consensus        29 w~~~~~~~~~~~~~~~~pdG~ilv--s~-------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~--~~~dG~~lv~~~   95 (276)
T 3no2_A           29 WEYPLEKGWECNSVAATKAGEILF--SY-------SKGAKMITR-DGRELWNIAAPAGCEMQTAR--ILPDGNALVAWC   95 (276)
T ss_dssp             EEEECCTTCCCCEEEECTTSCEEE--EC-------BSEEEEECT-TSCEEEEEECCTTCEEEEEE--ECTTSCEEEEEE
T ss_pred             EEeCCCccCCCcCeEECCCCCEEE--eC-------CCCEEEECC-CCCEEEEEcCCCCccccccE--ECCCCCEEEEec
Confidence            4566654  689999999998776  21       235999999 89999999886443444332  234556666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=92.64  E-value=6.8  Score=36.85  Aligned_cols=169  Identities=17%  Similarity=0.095  Sum_probs=99.4

Q ss_pred             EEEEeCCCcc--CEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEee
Q 014962            9 VRKFHLGGTP--KKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT   86 (415)
Q Consensus         9 i~~i~L~~tp--~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT   86 (415)
                      ++++|-...+  +-|.|+ . +.+.+++...    -.|.|+.+|+.|++++.++.+++.--...+...   ++..++ .|
T Consensus        34 v~~~phd~~~ftqGL~~~-~-~~LyestG~~----g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~---g~~ly~-lt  103 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-N-GYFYESTGLN----GRSSIRKVDIESGKTLQQIELGKRYFGEGISDW---KDKIVG-LT  103 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-T-TEEEEEEEET----TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE---TTEEEE-EE
T ss_pred             EEEecCCCCcccceEEEE-C-CEEEEECCCC----CCceEEEEECCCCcEEEEEecCCccceeEEEEe---CCEEEE-EE
Confidence            4667777777  778888 3 4555555433    258899999999999999998765333333332   333333 23


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      -               ..+++++|+..                                                     
T Consensus       104 w---------------~~~~v~v~D~~-----------------------------------------------------  115 (262)
T 3nol_A          104 W---------------KNGLGFVWNIR-----------------------------------------------------  115 (262)
T ss_dssp             S---------------SSSEEEEEETT-----------------------------------------------------
T ss_pred             e---------------eCCEEEEEECc-----------------------------------------------------
Confidence            3               14566666654                                                     


Q ss_pred             ccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCC-eEEEEeeCCCCccceeeeeeecc--c-eEEEEEEEeCCE
Q 014962          167 IKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGN-AFYVCGFPNDNPQRVRRFAVGRT--R-FMIMLLTAHFTR  242 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~-~l~v~~~~~~~~~~L~~~a~~~~--~-~~i~sI~~~~n~  242 (415)
                               .++++.+-+..+--.+++.-.++ |+++-|. +|.+++...  -+.++.....+.  + ..+..+...+.+
T Consensus       116 ---------t~~~~~ti~~~~eG~glt~dg~~-L~~SdGs~~i~~iDp~T--~~v~~~I~V~~~g~~~~~lNELe~~~G~  183 (262)
T 3nol_A          116 ---------NLRQVRSFNYDGEGWGLTHNDQY-LIMSDGTPVLRFLDPES--LTPVRTITVTAHGEELPELNELEWVDGE  183 (262)
T ss_dssp             ---------TCCEEEEEECSSCCCCEEECSSC-EEECCSSSEEEEECTTT--CSEEEEEECEETTEECCCEEEEEEETTE
T ss_pred             ---------cCcEEEEEECCCCceEEecCCCE-EEEECCCCeEEEEcCCC--CeEEEEEEeccCCccccccceeEEECCE
Confidence                     23333333443333456644445 8887753 477777764  233443333221  1 134456666889


Q ss_pred             EEEeecCCcEEEEEEEccCCeEEEEe
Q 014962          243 IAVGDCRDGILFYSYHEDARKLEQIY  268 (415)
Q Consensus       243 IlVGD~~~Sv~ll~y~~~~~~L~~va  268 (415)
                      |++..-+.. .+++.|+..++....-
T Consensus       184 lyan~w~~~-~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          184 IFANVWQTN-KIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEEEETTSS-EEEEECTTTCBEEEEE
T ss_pred             EEEEEccCC-eEEEEECCCCcEEEEE
Confidence            998886554 5688888877664443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=92.53  E-value=7.2  Score=36.85  Aligned_cols=162  Identities=11%  Similarity=0.036  Sum_probs=93.1

Q ss_pred             EEEEeCCCcc--CEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEee
Q 014962            9 VRKFHLGGTP--KKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT   86 (415)
Q Consensus         9 i~~i~L~~tp--~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT   86 (415)
                      ++.+|-...+  +-|.|+.  +.+.+++...      ..|+.+|+.|++++.++ +++.--...+..   .++..++ .|
T Consensus        46 v~~~phd~~~ftqGL~~~~--~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~---~g~~Ly~-lt  112 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFHQ--GHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIFAEGLAS---DGERLYQ-LT  112 (268)
T ss_dssp             EEEEECCTTCCEEEEEEET--TEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCCEEEEEE---CSSCEEE-EE
T ss_pred             EEEEcCCCccccceEEEEC--CEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcceeEEEE---eCCEEEE-EE
Confidence            4666766655  6777764  4555554322      23999999999999988 776433333322   2333333 23


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      -               ..+++++|+..                                                     
T Consensus       113 w---------------~~~~v~V~D~~-----------------------------------------------------  124 (268)
T 3nok_A          113 W---------------TEGLLFTWSGM-----------------------------------------------------  124 (268)
T ss_dssp             S---------------SSCEEEEEETT-----------------------------------------------------
T ss_pred             c---------------cCCEEEEEECC-----------------------------------------------------
Confidence            2               14566666554                                                     


Q ss_pred             ccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccce---EEEEEEEeCCE
Q 014962          167 IKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRF---MIMLLTAHFTR  242 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~---~i~sI~~~~n~  242 (415)
                               .++++.+-+..+.-.+|+.-.++ |+++-| ++|++++...  -+.++.....+.+.   .+..|...+.+
T Consensus       125 ---------Tl~~~~ti~~~~eGwGLt~Dg~~-L~vSdGs~~l~~iDp~T--~~v~~~I~V~~~g~~v~~lNeLe~~dG~  192 (268)
T 3nok_A          125 ---------PPQRERTTRYSGEGWGLCYWNGK-LVRSDGGTMLTFHEPDG--FALVGAVQVKLRGQPVELINELECANGV  192 (268)
T ss_dssp             ---------TTEEEEEEECSSCCCCEEEETTE-EEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEETTE
T ss_pred             ---------cCcEEEEEeCCCceeEEecCCCE-EEEECCCCEEEEEcCCC--CeEEEEEEeCCCCcccccccccEEeCCE
Confidence                     23334444444444567755455 888764 4477777764  23344433333222   34566767888


Q ss_pred             EEEeecCCcEEEEEEEccCCeE
Q 014962          243 IAVGDCRDGILFYSYHEDARKL  264 (415)
Q Consensus       243 IlVGD~~~Sv~ll~y~~~~~~L  264 (415)
                      |++..-... .+++.|+..++.
T Consensus       193 lyanvw~s~-~I~vIDp~TG~V  213 (268)
T 3nok_A          193 IYANIWHSS-DVLEIDPATGTV  213 (268)
T ss_dssp             EEEEETTCS-EEEEECTTTCBE
T ss_pred             EEEEECCCC-eEEEEeCCCCcE
Confidence            998885544 567778877654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.32  E-value=7.1  Score=36.29  Aligned_cols=131  Identities=13%  Similarity=0.085  Sum_probs=69.9

Q ss_pred             eEEEeee-CCceEEEEe--CCeEEEEeeCCCCccceeeeeee--cc--ceEEEEEEEeCCEEEEeec-CCcEEEEEEEcc
Q 014962          189 VLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVG--RT--RFMIMLLTAHFTRIAVGDC-RDGILFYSYHED  260 (415)
Q Consensus       189 V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~--~~--~~~i~sI~~~~n~IlVGD~-~~Sv~ll~y~~~  260 (415)
                      +.+++-- .|+ |+++-  +++|.+|++..++  .+......  ..  ...-..+...++++++.+. -..+.++.++..
T Consensus       143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  219 (347)
T 3hfq_A          143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAG--QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ  219 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEEEECTTS--CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceEEEECCCCc-EEEEeCCCCEEEEEEECCCC--cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            5545422 467 65553  4579999998432  23322211  11  1122344556778888665 457788888876


Q ss_pred             CCeEEEEec---CCCc----ceeEEEEeeeCC-eEEEeC-CCCcEEEEecCCCcCCCCCCCCccceeeeeec-CccccEE
Q 014962          261 ARKLEQIYC---DPSQ----RLVADCVLMDVD-TAVVSD-RKGSIAVLSCSDRLEDNASPECNLTPNCAYHM-GEIAVSI  330 (415)
Q Consensus       261 ~~~L~~var---D~~~----~~vta~~~Ld~d-~~l~aD-~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhl-Gd~Vt~~  330 (415)
                      .+++..+..   ....    .++.++.|-.++ .+++++ .++.|.+++++..        ..+.....+.. |..+..+
T Consensus       220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~--------g~~~~~~~~~~~~~~~~~~  291 (347)
T 3hfq_A          220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD--------GHLTLIQQISTEGDFPRDF  291 (347)
T ss_dssp             TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG--------GCEEEEEEEECSSSCCCEE
T ss_pred             CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC--------CcEEEeEEEecCCCCcCeE
Confidence            666654432   1111    356666664333 444554 4677888887531        13444455544 4445554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=92.21  E-value=7.3  Score=36.19  Aligned_cols=117  Identities=11%  Similarity=0.034  Sum_probs=79.9

Q ss_pred             ceEEEEEEEecCCc--eEEEeeeCCceEEEEeCC----eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeec
Q 014962          175 WQLRLAYSTTWPGM--VLAICPYLDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDC  248 (415)
Q Consensus       175 ~~L~l~~~~~~~g~--V~al~~~~g~yLl~~vg~----~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~  248 (415)
                      +..+++.+.+.+..  ...|.--.+. |..+.|.    .|.++++..  .+.++.. ......+...|...+++|++.+-
T Consensus         7 ~~~~v~~~~phd~~~ftqGL~~~~~~-LyestG~~g~S~v~~vD~~t--gkv~~~~-~l~~~~fgeGi~~~~~~ly~ltw   82 (243)
T 3mbr_X            7 QGYRVVKRYPHDTTAFTEGLFYLRGH-LYESTGETGRSSVRKVDLET--GRILQRA-EVPPPYFGAGIVAWRDRLIQLTW   82 (243)
T ss_dssp             CCEEEEEEEECCTTCCEEEEEEETTE-EEEEECCTTSCEEEEEETTT--CCEEEEE-ECCTTCCEEEEEEETTEEEEEES
T ss_pred             cceEEEEEcCCCCccccccEEEECCE-EEEECCCCCCceEEEEECCC--CCEEEEE-eCCCCcceeEEEEeCCEEEEEEe
Confidence            46777777776544  5577644455 9999887    799999986  3445553 33445566778888999999998


Q ss_pred             CCcEEEEEEEccCCeEE-EEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEe
Q 014962          249 RDGILFYSYHEDARKLE-QIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       249 ~~Sv~ll~y~~~~~~L~-~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~  300 (415)
                      ..+. ++.||.+..++. .+.-. ..-|..+   -|.+.++++|..+.|+++.
T Consensus        83 ~~~~-v~v~D~~tl~~~~ti~~~-~~Gwglt---~dg~~L~vSdgs~~l~~iD  130 (243)
T 3mbr_X           83 RNHE-GFVYDLATLTPRARFRYP-GEGWALT---SDDSHLYMSDGTAVIRKLD  130 (243)
T ss_dssp             SSSE-EEEEETTTTEEEEEEECS-SCCCEEE---ECSSCEEEECSSSEEEEEC
T ss_pred             eCCE-EEEEECCcCcEEEEEeCC-CCceEEe---eCCCEEEEECCCCeEEEEe
Confidence            8776 567888765443 33333 2334443   2567899999988888776

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=91.92  E-value=6.6  Score=37.25  Aligned_cols=100  Identities=8%  Similarity=-0.036  Sum_probs=49.7

Q ss_pred             CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceE----EEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecC
Q 014962          196 LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFM----IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCD  270 (415)
Q Consensus       196 ~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~----i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD  270 (415)
                      .|. |+++. +..|+.++.... +.+++. .... +..    .......++.|++|..-..  ++.|+...+++.-....
T Consensus       143 ~~~-v~v~~~~g~l~~~d~~tG-~~~W~~-~~~~-~~~~~~~~~~~~~~~~~v~~g~~~g~--l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          143 DGL-VLIHTSNGQLQALNEADG-AVKWTV-NLDM-PSLSLRGESAPTTAFGAAVVGGDNGR--VSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             TTE-EEEECTTSEEEEEETTTC-CEEEEE-ECCC------CCCCCCEEETTEEEECCTTTE--EEEEETTTCCEEEEEEC
T ss_pred             CCE-EEEEcCCCeEEEEECCCC-cEEEEE-eCCC-CceeecCCCCcEEECCEEEEEcCCCE--EEEEECCCCcEEEEEec
Confidence            555 66665 445777777532 122222 1111 110    1223334788888865443  46677766555433222


Q ss_pred             CCcce---------eEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962          271 PSQRL---------VADCVLMDVDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       271 ~~~~~---------vta~~~Ld~d~~l~aD~~gNl~vl~~  301 (415)
                      ..+..         +.+.-.++++.++++..+|.|+.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          217 SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             CC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence            21111         11222345667777777788888774

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.76  E-value=8.3  Score=35.86  Aligned_cols=93  Identities=18%  Similarity=0.084  Sum_probs=54.9

Q ss_pred             EeeeCCceEEEEeC--------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---cEEEEEEEc
Q 014962          192 ICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---GILFYSYHE  259 (415)
Q Consensus       192 l~~~~g~yLl~~vg--------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---Sv~ll~y~~  259 (415)
                      ++.++|+ |.+.-|        +.+.+|++..   ..+...+....+-.-.+..+.++.|+| |-...   .-.+..|+.
T Consensus       144 ~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~  219 (315)
T 4asc_A          144 VLSHMDL-VYVIGGKGSDRKCLNKMCVYDPKK---FEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI  219 (315)
T ss_dssp             EEEETTE-EEEECCBCTTSCBCCCEEEEETTT---TEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred             EEEECCE-EEEEeCCCCCCcccceEEEEeCCC---CeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence            3446666 444333        3578888775   234443432222223334445666554 54322   235788999


Q ss_pred             cCCeEEEEecCCCcceeEEEEeeeCCeEE
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMDVDTAV  288 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld~d~~l  288 (415)
                      +.++-..++.-+.+|.-.++..+++.-++
T Consensus       220 ~~~~W~~~~~~p~~r~~~~~~~~~~~l~v  248 (315)
T 4asc_A          220 TDNKWAPFEAFPQERSSLSLVSLVGTLYA  248 (315)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred             CCCeEEECCCCCCcccceeEEEECCEEEE
Confidence            99999999887888887777776655333

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.75  E-value=7.8  Score=35.57  Aligned_cols=96  Identities=8%  Similarity=-0.039  Sum_probs=55.9

Q ss_pred             EEeeeCCceEEEEeC-------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---cEEEEEEEc
Q 014962          191 AICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---GILFYSYHE  259 (415)
Q Consensus       191 al~~~~g~yLl~~vg-------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---Sv~ll~y~~  259 (415)
                      +++.++|+ |.+.-|       +.+.+|++..   ..+...+....+..-.++.+.++.|++ |-...   .-.+..|+.
T Consensus       154 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~d~~~---~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          154 GLVVASGV-IYCLGGYDGLNILNSVEKYDPHT---GHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             EEEEETTE-EEEECCBCSSCBCCCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             eEEEECCE-EEEECCCCCCcccceEEEEeCCC---CcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeC
Confidence            44455666 544322       5578888875   235443333222233344445666555 54321   234578999


Q ss_pred             cCCeEEEEecCCCcceeEEEEeeeCCeEEEe
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMDVDTAVVS  290 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld~d~~l~a  290 (415)
                      +.++...++.-+.+|.-.++..+++.-++.+
T Consensus       230 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  260 (301)
T 2vpj_A          230 RTDSWTTVTSMTTPRCYVGATVLRGRLYAIA  260 (301)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             CCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence            9999999988888887766666655544443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.54  E-value=8.3  Score=35.41  Aligned_cols=89  Identities=11%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             EEeeeCCceEEEEeC-------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---cEEEEEEEc
Q 014962          191 AICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---GILFYSYHE  259 (415)
Q Consensus       191 al~~~~g~yLl~~vg-------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---Sv~ll~y~~  259 (415)
                      +++.++++ |++.-|       +.+.+|++..   ..+...+....+-.-.++.+.++.|++ |....   .-.+..|+.
T Consensus       201 ~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          201 GVALLNDH-IYVVGGFDGTAHLSSVEAYNIRT---DSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             EEEEETTE-EEEECCBCSSSBCCCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred             eEEEECCE-EEEEeCCCCCcccceEEEEeCCC---CcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence            44456676 544332       4578888875   234443332222222233444666544 54321   245688999


Q ss_pred             cCCeEEEEecCCCcceeEEEEeee
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMD  283 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld  283 (415)
                      +.++-..+..-+.+|.-.++..++
T Consensus       277 ~~~~W~~~~~~~~~r~~~~~~~~~  300 (301)
T 2vpj_A          277 IIDSWEVVTSMGTQRCDAGVCVLR  300 (301)
T ss_dssp             TTTEEEEEEEEEEEEESCEEEEEE
T ss_pred             CCCeEEEcCCCCcccccceEEEeC
Confidence            988888887766666665555553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.43  E-value=8.3  Score=36.41  Aligned_cols=115  Identities=10%  Similarity=0.012  Sum_probs=79.0

Q ss_pred             eEEEEEEEecCCce--EEEeeeCCceEEEEeCC--eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCc
Q 014962          176 QLRLAYSTTWPGMV--LAICPYLDRYFLASAGN--AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG  251 (415)
Q Consensus       176 ~L~l~~~~~~~g~V--~al~~~~g~yLl~~vg~--~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~S  251 (415)
                      ..+++.+.+.....  ..|.--.+. |.++.|.  +|.++++..  .+.++..  .....+...|...+++|++.+-..+
T Consensus        42 ~~~Vv~~~phd~~~ftqGL~~~~~~-Ly~stG~~g~v~~iD~~T--gkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~  116 (268)
T 3nok_A           42 VAHIIREYPHATNAFTQGLVFHQGH-FFESTGHQGTLRQLSLES--AQPVWME--RLGNIFAEGLASDGERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEEEECCTTCCEEEEEEETTE-EEEEETTTTEEEECCSSC--SSCSEEE--ECTTCCEEEEEECSSCEEEEESSSC
T ss_pred             ceEEEEEEcCCCccccceEEEECCE-EEEEcCCCCEEEEEECCC--CcEEeEE--CCCCcceeEEEEeCCEEEEEEccCC
Confidence            56777777765444  677644445 8899888  588888875  3455554  5556677778888999999988777


Q ss_pred             EEEEEEEccCCeEE-EEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEe
Q 014962          252 ILFYSYHEDARKLE-QIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       252 v~ll~y~~~~~~L~-~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~  300 (415)
                      . ++.||.+..++. .+.-... -|..+   -|...++++|..+.|+++.
T Consensus       117 ~-v~V~D~~Tl~~~~ti~~~~e-GwGLt---~Dg~~L~vSdGs~~l~~iD  161 (268)
T 3nok_A          117 L-LFTWSGMPPQRERTTRYSGE-GWGLC---YWNGKLVRSDGGTMLTFHE  161 (268)
T ss_dssp             E-EEEEETTTTEEEEEEECSSC-CCCEE---EETTEEEEECSSSEEEEEC
T ss_pred             E-EEEEECCcCcEEEEEeCCCc-eeEEe---cCCCEEEEECCCCEEEEEc
Confidence            6 677898765443 4433322 34444   3677899999877787776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=91.17  E-value=15  Score=37.63  Aligned_cols=188  Identities=11%  Similarity=0.066  Sum_probs=107.5

Q ss_pred             ceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-eeEEEE
Q 014962            6 RLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVV   84 (415)
Q Consensus         6 ~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-~~~lvV   84 (415)
                      .+.+.+++.+..|+.++++|+.+.++++...      ...|.++|..+++++..++....-+.-....+...+ .++++.
T Consensus       314 ~l~~~~i~~~~~~~~~~~spdg~~l~va~~~------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s  387 (543)
T 1nir_A          314 NLTVTSIGAAPFLHDGGWDSSHRYFMTAANN------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  387 (543)
T ss_dssp             SCEEEEEECCSSCCCEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEE
T ss_pred             cceeEEeccCcCccCceECCCCCEEEEEecC------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEe
Confidence            3456688888899999999999987776532      346999999999998887753221110111122333 455553


Q ss_pred             eeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCC
Q 014962           85 GTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC  164 (415)
Q Consensus        85 GT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  164 (415)
                      +..               ..+.|.+|++...                                 .        .|+    
T Consensus       388 ~~~---------------~d~~V~v~d~~~~---------------------------------~--------~~~----  407 (543)
T 1nir_A          388 SHL---------------GDGSISLIGTDPK---------------------------------N--------HPQ----  407 (543)
T ss_dssp             EBS---------------SSSEEEEEECCTT---------------------------------T--------CTT----
T ss_pred             ccC---------------CCceEEEEEeCCC---------------------------------C--------Cch----
Confidence            311               1356777777620                                 0        000    


Q ss_pred             CCccccccccceEEEEEEEecC-CceEEEee-eCCceEEEEe--------CCeEEEEeeCCCCccce-eee--ee----e
Q 014962          165 DGIKLEETETWQLRLAYSTTWP-GMVLAICP-YLDRYFLASA--------GNAFYVCGFPNDNPQRV-RRF--AV----G  227 (415)
Q Consensus       165 ~g~~~~~~~~~~L~l~~~~~~~-g~V~al~~-~~g~yLl~~v--------g~~l~v~~~~~~~~~~L-~~~--a~----~  227 (415)
                                ..++.+..-+.. +.+..|.- =+|++|.++.        .+.|.||+....  +.+ ...  +.    .
T Consensus       408 ----------~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~--~~~~~~~~v~~~~~~~  475 (543)
T 1nir_A          408 ----------YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL--DAKYQVLPIAEWADLG  475 (543)
T ss_dssp             ----------TBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT--TSCCEEECHHHHHCCC
T ss_pred             ----------hcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC--CCCeEEeechhhcccC
Confidence                      123334444443 45555653 3567677765        458999999852  112 110  00    0


Q ss_pred             ccceEEEEEE--EeCCEEEEeec----CCcEEEEEEEccCCeEEEEecCCC
Q 014962          228 RTRFMIMLLT--AHFTRIAVGDC----RDGILFYSYHEDARKLEQIYCDPS  272 (415)
Q Consensus       228 ~~~~~i~sI~--~~~n~IlVGD~----~~Sv~ll~y~~~~~~L~~varD~~  272 (415)
                      ..+-.+..+.  ..|+.++++.-    ..+ .+..||....++...-+|..
T Consensus       476 ~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~-~i~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          476 EGAKRVVQPEYNKRGDEVWFSVWNGKNDSS-ALVVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             SSCCEEEEEEECSSSSEEEEEEECCTTSCC-EEEEEETTTTEEEEEECCTT
T ss_pred             CCCCceEeccCCCCCCEEEEEeecCCCCCC-eEEEEECCCceEEEeecCCC
Confidence            1122455554  36788887642    223 33448888888877777644

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=91.10  E-value=11  Score=35.83  Aligned_cols=125  Identities=12%  Similarity=0.025  Sum_probs=67.6

Q ss_pred             ceEEEeee-CCceEEEEe--CCeEEEEeeCCCCccce---eeeeeeccc----e-------EEEE---EEEeCCEEEEee
Q 014962          188 MVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRV---RRFAVGRTR----F-------MIML---LTAHFTRIAVGD  247 (415)
Q Consensus       188 ~V~al~~~-~g~yLl~~v--g~~l~v~~~~~~~~~~L---~~~a~~~~~----~-------~i~s---I~~~~n~IlVGD  247 (415)
                      .+.+++-- .|++|+++.  ++.+.+|++...+.++.   .........    .       .+..   +...+.++++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            46666522 466565553  46899998864221211   111111110    0       2334   445678999988


Q ss_pred             cCC------cEEEEEEEccCCeEEE----Ee-cCCCcceeEEEEee----eCCeEEEeCCC-CcEEEEecCCCcCCCCCC
Q 014962          248 CRD------GILFYSYHEDARKLEQ----IY-CDPSQRLVADCVLM----DVDTAVVSDRK-GSIAVLSCSDRLEDNASP  311 (415)
Q Consensus       248 ~~~------Sv~ll~y~~~~~~L~~----va-rD~~~~~vta~~~L----d~d~~l~aD~~-gNl~vl~~~~~~~~~~~~  311 (415)
                      ...      ++.++..+. .+++..    +. ....++++   .+-    |.+.+++++.+ +.+.+++.+.        
T Consensus       274 ~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~---a~sp~~~dg~~l~v~~~~~~~v~v~~~~~--------  341 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSN---AVSPCPWSDEWMAITDDQEGWLEIYRWKD--------  341 (365)
T ss_dssp             EESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCC---CEEECTTCTTEEEEECSSSCEEEEEEEET--------
T ss_pred             CCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccc---eecCCCcCCCEEEEEEcCCCeEEEEEEch--------
Confidence            644      687777764 455553    21 12234433   222    45677777764 7888888654        


Q ss_pred             CCccceeeeeecCc
Q 014962          312 ECNLTPNCAYHMGE  325 (415)
Q Consensus       312 ~~kL~~~~~fhlGd  325 (415)
                       ..|...+.+.+++
T Consensus       342 -~~l~~~~~~~~~~  354 (365)
T 1jof_A          342 -EFLHRVARVRIPE  354 (365)
T ss_dssp             -TEEEEEEEEECCS
T ss_pred             -hhCceeeEEEcCC
Confidence             1455555666665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.04  E-value=7.7  Score=39.51  Aligned_cols=94  Identities=11%  Similarity=0.089  Sum_probs=56.1

Q ss_pred             eEEEEeCCCccCE----EEEecCCCEEEEEEEe--------eCCC----cceeeEEEEeCCCCcEEEEEeCCCCCeEEEE
Q 014962            8 NVRKFHLGGTPKK----VLYHSESRLLIVMRTE--------LNND----TCSSDICCVDPLSGSVLSSFKLELGETGKSM   71 (415)
Q Consensus         8 ~i~~i~L~~tp~~----I~y~~~~~~~~v~~~~--------~~~~----~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si   71 (415)
                      -+.+++.+..|..    +-|+|..+.+++...-        .+..    .....|.++|..+++.+.++.+...+. . -
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~-~-P  253 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR-M-A  253 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE-E-E
T ss_pred             EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC-c-c
Confidence            3567777766654    4459999966665311        0011    346789999999999999988863211 1 1


Q ss_pred             EEEEE--C-CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           72 ELVRV--G-HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        72 ~~~~l--~-~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      .-+.|  . +..++.|+.....          ..-.+.|.+|..+
T Consensus       254 ~~i~f~~~Pdg~~aYV~~e~~~----------~~Lss~V~v~~~d  288 (462)
T 2ece_A          254 LELRPLHDPTKLMGFINMVVSL----------KDLSSSIWLWFYE  288 (462)
T ss_dssp             EEEEECSSTTCCEEEEEEEEET----------TTCCEEEEEEEEE
T ss_pred             ceeEeeECCCCCEEEEEEeeec----------cCCCceEEEEEec
Confidence            22334  3 4466666666322          1124677777665

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.92  E-value=5.2  Score=37.32  Aligned_cols=37  Identities=14%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc
Q 014962           18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS   55 (415)
Q Consensus        18 p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~   55 (415)
                      .+..+.. ..++|++.............+..+|+.+.+
T Consensus       102 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  138 (318)
T 2woz_A          102 LFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAK  138 (318)
T ss_dssp             SCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTE
T ss_pred             ccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCC
Confidence            3344444 345666666543334556789999997643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=90.67  E-value=11  Score=35.20  Aligned_cols=118  Identities=6%  Similarity=0.033  Sum_probs=67.8

Q ss_pred             cCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCc--cceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962          185 WPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNP--QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~--~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      -.++|++++-- .|++|+.+. ...|++|++.....  +.+.....+......+.....+++|+.|..-..+.++.....
T Consensus       106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            45788888733 467455443 45699999953211  112222222222333333446789999998889988765543


Q ss_pred             CCeEEEEecCCCcceeEEEEeeeC---CeEEEeCCCCcEEEEecCC
Q 014962          261 ARKLEQIYCDPSQRLVADCVLMDV---DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       261 ~~~L~~varD~~~~~vta~~~Ld~---d~~l~aD~~gNl~vl~~~~  303 (415)
                      ..+....- .....+|.++.|-.+   ..++.+..+|.+.+++...
T Consensus       186 ~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          186 DWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            22222221 234557788887643   2577788889999988643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=90.39  E-value=9.9  Score=35.74  Aligned_cols=117  Identities=9%  Similarity=0.075  Sum_probs=79.5

Q ss_pred             ceEEEEEEEecCCce--EEEeeeCCceEEEEeCC----eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeec
Q 014962          175 WQLRLAYSTTWPGMV--LAICPYLDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDC  248 (415)
Q Consensus       175 ~~L~l~~~~~~~g~V--~al~~~~g~yLl~~vg~----~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~  248 (415)
                      +..+++.+.+.....  ..|.--+|. |..+.|.    .|.++++..  .+.++.. ..+...+...|...+++|++.+-
T Consensus        29 ~~~~vv~~~phd~~~ftqGL~~~~~~-LyestG~~g~S~v~~vD~~T--gkv~~~~-~l~~~~FgeGit~~g~~ly~ltw  104 (262)
T 3nol_A           29 YDYQIVHSYPHDTKAFTEGFFYRNGY-FYESTGLNGRSSIRKVDIES--GKTLQQI-ELGKRYFGEGISDWKDKIVGLTW  104 (262)
T ss_dssp             EEEEEEEEEECCTTCEEEEEEEETTE-EEEEEEETTEEEEEEECTTT--CCEEEEE-ECCTTCCEEEEEEETTEEEEEES
T ss_pred             cceEEEEEecCCCCcccceEEEECCE-EEEECCCCCCceEEEEECCC--CcEEEEE-ecCCccceeEEEEeCCEEEEEEe
Confidence            567888877776554  667644555 8898876    799999986  3445553 33445577778888999999998


Q ss_pred             CCcEEEEEEEccCCeE-EEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEe
Q 014962          249 RDGILFYSYHEDARKL-EQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       249 ~~Sv~ll~y~~~~~~L-~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~  300 (415)
                      ..+. ++.||.+..++ ..+.-.. .-|..+   -|.+.++.+|..+.|+++.
T Consensus       105 ~~~~-v~v~D~~t~~~~~ti~~~~-eG~glt---~dg~~L~~SdGs~~i~~iD  152 (262)
T 3nol_A          105 KNGL-GFVWNIRNLRQVRSFNYDG-EGWGLT---HNDQYLIMSDGTPVLRFLD  152 (262)
T ss_dssp             SSSE-EEEEETTTCCEEEEEECSS-CCCCEE---ECSSCEEECCSSSEEEEEC
T ss_pred             eCCE-EEEEECccCcEEEEEECCC-CceEEe---cCCCEEEEECCCCeEEEEc
Confidence            8776 66788876544 3444332 224333   2567889999877777665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=90.27  E-value=7.4  Score=36.08  Aligned_cols=118  Identities=9%  Similarity=0.021  Sum_probs=63.8

Q ss_pred             ecCCceEEEeee---CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEe--CCEEEEeecCCcEEEEEE
Q 014962          184 TWPGMVLAICPY---LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSY  257 (415)
Q Consensus       184 ~~~g~V~al~~~---~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~--~n~IlVGD~~~Sv~ll~y  257 (415)
                      .-.++|++|+-.   .|.+|+.+ ...+|.+|++.....+.+.....+......+.....  +.+++.|..-..+.++.+
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~  134 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY  134 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence            457889999832   36635443 346699999975211112221112222223333333  568999999899988876


Q ss_pred             EccCCeEEE-EecCCCcceeEEEEeeeC------------------CeEEEeCCCCcEEEEecC
Q 014962          258 HEDARKLEQ-IYCDPSQRLVADCVLMDV------------------DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       258 ~~~~~~L~~-varD~~~~~vta~~~Ld~------------------d~~l~aD~~gNl~vl~~~  302 (415)
                      +... .... .-.......+.++.+-.+                  ..++.+..+|.|.++...
T Consensus       135 ~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          135 TGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             CSSS-CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred             CCCC-CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence            5432 1111 111222334444444221                  357777888888877754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.18  E-value=11  Score=34.48  Aligned_cols=113  Identities=10%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             CCceEEEe-eeCCceEEEEeCC----eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecC-Cc-EEEEEEE
Q 014962          186 PGMVLAIC-PYLDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCR-DG-ILFYSYH  258 (415)
Q Consensus       186 ~g~V~al~-~~~g~yLl~~vg~----~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~-~S-v~ll~y~  258 (415)
                      .++..+++ .-.|++|+++-+.    .|.+|++..  .+.++..... ....-..+...++++++++.. .. +.++.++
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence            44444233 2346657766555    799999875  2333332222 222344445566788888875 56 8777776


Q ss_pred             ccCCeEEEEecC--CCcceeEEEEeeeCC-eEEEeC-CCCcEEEEecC
Q 014962          259 EDARKLEQIYCD--PSQRLVADCVLMDVD-TAVVSD-RKGSIAVLSCS  302 (415)
Q Consensus       259 ~~~~~L~~varD--~~~~~vta~~~Ld~d-~~l~aD-~~gNl~vl~~~  302 (415)
                      ... .+......  .......++.+-.++ .+++++ ..+.+.+++..
T Consensus       160 ~~g-~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          160 ADG-VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             TTC-CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCC-cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            432 22211100  112234444543333 355554 46678888753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.99  E-value=20  Score=37.22  Aligned_cols=46  Identities=17%  Similarity=0.050  Sum_probs=32.4

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeC
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKL   62 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l   62 (415)
                      ..+..++++|+++.++.+..... +.....|.++|..+++....+..
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~-~~~~~~i~~~d~~~g~~~~~~~~   82 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDS-DRNQLDLWSYDIGSGQTRLLVDS   82 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSS-CTTEEEEEEEETTTCCEEEEECG
T ss_pred             CCCCCceEecCCCEEEEEeccCC-CCcccEEEEEECCCCceeEccch
Confidence            35778999999998877764211 22356899999999886655544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=89.79  E-value=3.1  Score=42.77  Aligned_cols=111  Identities=7%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             cCCceEEEe-eeC--C-ceEEEE--eCCeEEEEeeCCCCccceeeeeee-c-cceEEEEEEEeCCEEEEeecCCcEEEEE
Q 014962          185 WPGMVLAIC-PYL--D-RYFLAS--AGNAFYVCGFPNDNPQRVRRFAVG-R-TRFMIMLLTAHFTRIAVGDCRDGILFYS  256 (415)
Q Consensus       185 ~~g~V~al~-~~~--g-~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~-~-~~~~i~sI~~~~n~IlVGD~~~Sv~ll~  256 (415)
                      -.++|++|+ .+.  | . ++++  ....|.+|++...  +.+...... . .....+.....+..++.|+....|.++.
T Consensus       307 H~~~V~sv~~~~s~~g~~-~laS~S~D~tvklWD~~~~--~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd  383 (524)
T 2j04_B          307 HDSYILSVSTAYSDFEDT-VVSTVAVDGYFYIFNPKDI--ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP  383 (524)
T ss_dssp             SSSCEEEEEEECCTTSCC-EEEEEETTSEEEEECGGGH--HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred             ccccEEEEEEEcCCCCCe-EEEEeccCCeEEEEECCCC--CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence            467899994 343  4 5 5554  3456999999752  222221111 1 1122334444567888888888776654


Q ss_pred             EEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEec
Q 014962          257 YHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       257 y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~  301 (415)
                      .+.. ..+..+..  ...+|+++.|-. ...++.+..+|.+.++..
T Consensus       384 ~~~~-~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          384 SRAA-FAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             TTCT-TCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             Cccc-ccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            3321 12222322  455788888743 346778888898887663

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.74  E-value=10  Score=35.27  Aligned_cols=95  Identities=9%  Similarity=-0.004  Sum_probs=55.7

Q ss_pred             EEeeeCCceEEEEeC----------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eec-C---CcEEEE
Q 014962          191 AICPYLDRYFLASAG----------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDC-R---DGILFY  255 (415)
Q Consensus       191 al~~~~g~yLl~~vg----------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~-~---~Sv~ll  255 (415)
                      +++.++++ |.+.-|          +.+.+|++..   ..++..+....+..-.+..+.++.|+| |-. .   ..-.+.
T Consensus        93 ~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  168 (315)
T 4asc_A           93 GLGEALNS-IYVVGGREIKDGERCLDSVMCYDRLS---FKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMC  168 (315)
T ss_dssp             EEEEETTE-EEEECCEESSTTCCBCCCEEEEETTT---TEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEE
T ss_pred             eEEEECCE-EEEEeCCcCCCCCcccceEEEECCCC---CcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEE
Confidence            34455666 555444          3477888764   235444433222233334446666554 543 1   123458


Q ss_pred             EEEccCCeEEEEecCCCcceeEEEEeeeCCeEEE
Q 014962          256 SYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVV  289 (415)
Q Consensus       256 ~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~  289 (415)
                      .|+...++-..++.-+.+|.-.++..+++.-++.
T Consensus       169 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  202 (315)
T 4asc_A          169 VYDPKKFEWKELAPMQTARSLFGATVHDGRIIVA  202 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred             EEeCCCCeEEECCCCCCchhceEEEEECCEEEEE
Confidence            8999999999998888888877777766654443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.93  E-value=14  Score=34.10  Aligned_cols=87  Identities=18%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             EEeeeCCceEEEEeC-------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecC---CcEEEEEEEc
Q 014962          191 AICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCR---DGILFYSYHE  259 (415)
Q Consensus       191 al~~~~g~yLl~~vg-------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~---~Sv~ll~y~~  259 (415)
                      +++.++++ |++.-|       +.+.+|++..   ..+........+-.-.++.+.++.|+| |-..   ..-.+..|+.
T Consensus       210 ~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          210 GVCVLHNC-IYAAGGYDGQDQLNSVERYDVET---ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             EEEEETTE-EEEECCBCSSSBCCCEEEEETTT---TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             eEEEECCE-EEEEeCCCCCCccceEEEEeCCC---CcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence            34455676 444332       5588888875   234443322222222334445666555 5321   1235688999


Q ss_pred             cCCeEEEEecCCCcceeEEEEe
Q 014962          260 DARKLEQIYCDPSQRLVADCVL  281 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~  281 (415)
                      +.++-..++.-+.+|.-.++..
T Consensus       286 ~~~~W~~~~~~p~~r~~~~~~~  307 (308)
T 1zgk_A          286 DTDTWSEVTRMTSGRSGVGVAV  307 (308)
T ss_dssp             TTTEEEEEEECSSCCBSCEEEE
T ss_pred             CCCEEeecCCCCCCcccceeEe
Confidence            9999999888888876655543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.66  E-value=15  Score=33.84  Aligned_cols=95  Identities=14%  Similarity=0.007  Sum_probs=53.9

Q ss_pred             EEeeeCCceEEEEeC--------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC-------cEEE
Q 014962          191 AICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD-------GILF  254 (415)
Q Consensus       191 al~~~~g~yLl~~vg--------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~-------Sv~l  254 (415)
                      +++.++|+ |++.-|        +.+.+|++..   ..+...+....+..-.++.+.++.|+| |-...       .-.+
T Consensus        96 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  171 (306)
T 3ii7_A           96 AACAAEGK-IYTSGGSEVGNSALYLFECYDTRT---ESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSC  171 (306)
T ss_dssp             EEEEETTE-EEEECCBBTTBSCCCCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCE
T ss_pred             eEEEECCE-EEEECCCCCCCcEeeeEEEEeCCC---CceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceE
Confidence            44456676 554433        3477888765   234443333222222333445666555 43211       2335


Q ss_pred             EEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEE
Q 014962          255 YSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVV  289 (415)
Q Consensus       255 l~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~  289 (415)
                      ..|+.+.++-..++.-+.+|.-.++..+++.-++.
T Consensus       172 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~  206 (306)
T 3ii7_A          172 EVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV  206 (306)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred             EEeCCCCCeEEECCCccchhhcceEEEECCEEEEE
Confidence            78899999999998777777766666665554444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=88.63  E-value=12  Score=32.84  Aligned_cols=65  Identities=3%  Similarity=-0.081  Sum_probs=39.0

Q ss_pred             EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCC-CcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962           12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS-GSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS   87 (415)
Q Consensus        12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t-~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~   87 (415)
                      ......+..++++|+.+.+++..        ...|.++|..+ ++............+.   .+.+. +..+|+++..
T Consensus        38 ~~~~~~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           38 WQTPELFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNN---DHGISPDGALYAISDK  104 (297)
T ss_dssp             EEESSCCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCS---CCEECTTSSEEEEEEC
T ss_pred             ccCCcceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEecccccccccc---ceEECCCCCEEEEEEe
Confidence            33455677889999988777653        13699999988 7655433322223333   23343 4567776653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=88.54  E-value=13  Score=38.12  Aligned_cols=112  Identities=7%  Similarity=-0.016  Sum_probs=62.9

Q ss_pred             CCceEEEeeeCCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccceEEEEEE----EeC-CEEEEeecCCcEEEEEEEc
Q 014962          186 PGMVLAICPYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT----AHF-TRIAVGDCRDGILFYSYHE  259 (415)
Q Consensus       186 ~g~V~al~~~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~----~~~-n~IlVGD~~~Sv~ll~y~~  259 (415)
                      .++|++++--.+.+|++|.. ..|.+|++.... ..+.....+..  .|.+|.    ..+ ++++.|..-..+.++..+.
T Consensus       266 ~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~-~~~~~~~~H~~--~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          266 DSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-VPSFYDQVHDS--YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             TTCEEEEEESSSSEEEEEETTSEEEEEETTBCS-SCSEEEECSSS--CEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             CCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC-CceEEeecccc--cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            57899887545554666544 669999997521 11222222322  466663    134 5677777777786664432


Q ss_pred             cCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEec
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~  301 (415)
                      ........+.. ...++.++.|-. ...+++++.++.+.++..
T Consensus       343 ~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~  384 (524)
T 2j04_B          343 IATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGASSLRAVPS  384 (524)
T ss_dssp             HHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSSEEEEEET
T ss_pred             CCccccccccc-ccCcccceEeCCCcCeEEEeCCCCcEEEEEC
Confidence            11111222221 112466677754 347888888888888874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=88.46  E-value=12  Score=32.76  Aligned_cols=112  Identities=10%  Similarity=-0.032  Sum_probs=66.5

Q ss_pred             cCCceEEEeee-CCceEEEEeCCeEEEEeeCC-CCccceeeeeeec--cceEEEEEEEeCCEEEEeecC--CcEEEEEEE
Q 014962          185 WPGMVLAICPY-LDRYFLASAGNAFYVCGFPN-DNPQRVRRFAVGR--TRFMIMLLTAHFTRIAVGDCR--DGILFYSYH  258 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~-~~~~~L~~~a~~~--~~~~i~sI~~~~n~IlVGD~~--~Sv~ll~y~  258 (415)
                      ..+.|.+++-- .|++|+++....|++|++.. ..   ........  .......+...+.+|+++...  ....++.++
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~  116 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPS---PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP  116 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCS---CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCC---ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence            37788887733 46768888888899999875 32   12111111  122234455567788887733  467778888


Q ss_pred             ccCCeEEEEecCCCcceeEEEEeeeC-CeEE-EeCCCCcEEEEecC
Q 014962          259 EDARKLEQIYCDPSQRLVADCVLMDV-DTAV-VSDRKGSIAVLSCS  302 (415)
Q Consensus       259 ~~~~~L~~varD~~~~~vta~~~Ld~-d~~l-~aD~~gNl~vl~~~  302 (415)
                      ...++...+.....   +.++.+-.+ ..++ .+..++.+.++.++
T Consensus       117 ~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A          117 STGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             TTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             CCCCceEEeecCCC---ccceEECCCCCEEEEEECCCCceEEEEEE
Confidence            77666666655432   555555433 3444 56667766666643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=88.43  E-value=21  Score=35.34  Aligned_cols=52  Identities=10%  Similarity=0.082  Sum_probs=40.9

Q ss_pred             eEEEEeCCC--------ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCC
Q 014962            8 NVRKFHLGG--------TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL   64 (415)
Q Consensus         8 ~i~~i~L~~--------tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~   64 (415)
                      .+++|+++.        .|+.++++|+.+.+.|...     .....|.+||..+++++.++.++.
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-----~~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-----SPAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-----SSSCEEEEEETTTTEEEEEEECCS
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-----CCCCeEEEEECCCCcEEEEEECCC
Confidence            357787753        7999999999998777632     123579999999999999998764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=88.03  E-value=8.7  Score=38.10  Aligned_cols=104  Identities=14%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             eEEEeeeCCceEEEEeCCeEEEEeeCCCC------ccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC-
Q 014962          189 VLAICPYLDRYFLASAGNAFYVCGFPNDN------PQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA-  261 (415)
Q Consensus       189 V~al~~~~g~yLl~~vg~~l~v~~~~~~~------~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~-  261 (415)
                      ..++.+-.|. |++|-++.+++|+++.-.      ............+. ++.|...++.++||  ..+ .+..|+-.. 
T Consensus        42 lLais~~~gl-l~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~--~~~-~l~v~dv~sl  116 (388)
T 1xip_A           42 NLDISNSKSL-FVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS--TRN-ALYSLDLEEL  116 (388)
T ss_dssp             CEEEETTTTE-EEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE--ESS-EEEEEESSST
T ss_pred             EEEEcCCCCE-EEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE--cCC-cEEEEEchhh
Confidence            3444555666 778888999998875310      00011111222344 66666678899999  333 355565422 


Q ss_pred             ---CeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          262 ---RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       262 ---~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                         ..+..+     ...+.++.++.. .++.+..+|.|+++.+..
T Consensus       117 ~~~~~~~~~-----~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~  155 (388)
T 1xip_A          117 SEFRTVTSF-----EKPVFQLKNVNN-TLVILNSVNDLSALDLRT  155 (388)
T ss_dssp             TCEEEEEEC-----SSCEEEEEECSS-EEEEEETTSEEEEEETTT
T ss_pred             hccCcccee-----ecceeeEEecCC-CEEEEECCCCEEEEEccC
Confidence               112111     122556666654 488889999999999654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=87.69  E-value=17  Score=33.37  Aligned_cols=81  Identities=11%  Similarity=-0.067  Sum_probs=47.3

Q ss_pred             CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC-----cEEEEEEEccCCeEEEEecCCCcceeEEE
Q 014962          206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD-----GILFYSYHEDARKLEQIYCDPSQRLVADC  279 (415)
Q Consensus       206 ~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~-----Sv~ll~y~~~~~~L~~varD~~~~~vta~  279 (415)
                      +.+.+|++..   ..+...+....+-.-.++.+.++.|++ |-...     .-.+..|+...++-..++.-+.+|.-.++
T Consensus       124 ~~~~~~d~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  200 (302)
T 2xn4_A          124 SSVEAYNIKS---NEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV  200 (302)
T ss_dssp             EEEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ceEEEEeCCC---CeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE
Confidence            3577888765   235444433223233334445676655 42210     12357889999999998877778877666


Q ss_pred             EeeeCCeEEE
Q 014962          280 VLMDVDTAVV  289 (415)
Q Consensus       280 ~~Ld~d~~l~  289 (415)
                      ..+++.-++.
T Consensus       201 ~~~~~~iyv~  210 (302)
T 2xn4_A          201 GVLNNLLYAV  210 (302)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEEEE
Confidence            6665554444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=87.67  E-value=16  Score=33.25  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=17.9

Q ss_pred             eeEEEEeCCCCcEEEEEeCCC
Q 014962           44 SDICCVDPLSGSVLSSFKLEL   64 (415)
Q Consensus        44 s~i~l~d~~t~~~i~s~~l~~   64 (415)
                      ..|.++|..+++.+..+.+..
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~   41 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPD   41 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSS
T ss_pred             CeEEEEECCCCcEEEEEecCC
Confidence            469999999999998888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.47  E-value=16  Score=33.82  Aligned_cols=81  Identities=10%  Similarity=-0.105  Sum_probs=46.6

Q ss_pred             CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---cEEEEEEEccCCeEEEEecCCCcceeEEEEe
Q 014962          206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVL  281 (415)
Q Consensus       206 ~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~  281 (415)
                      +.+.+|++..   ..+...+....+-.-.++.+.++.|++ |-...   .-.+..|+.+.++-..+..-+.+|.-.++..
T Consensus       184 ~~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~  260 (308)
T 1zgk_A          184 NSAECYYPER---NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV  260 (308)
T ss_dssp             CCEEEEETTT---TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ceEEEEeCCC---CeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE
Confidence            4578888865   234443322222222233444666555 53321   2345889999999999987777777666666


Q ss_pred             eeCCeEEE
Q 014962          282 MDVDTAVV  289 (415)
Q Consensus       282 Ld~d~~l~  289 (415)
                      +++.-++.
T Consensus       261 ~~~~i~v~  268 (308)
T 1zgk_A          261 HQGRIYVL  268 (308)
T ss_dssp             ETTEEEEE
T ss_pred             ECCEEEEE
Confidence            65443333

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.41  E-value=17  Score=33.30  Aligned_cols=82  Identities=11%  Similarity=-0.034  Sum_probs=49.0

Q ss_pred             CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---cEEEEEEEccCCeEEEEecCCCcceeEEEEe
Q 014962          206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVL  281 (415)
Q Consensus       206 ~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~  281 (415)
                      +.+.+|++..   ..+...+....+..-.++.+.+++|++ |-...   .-.+..|+.+.++-..++.-+.+|.-.++..
T Consensus       169 ~~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          169 NSCEVYDPAT---ETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             ceEEEeCCCC---CeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            4477888875   235444433222233344445666555 43221   2235789999999999988888887777777


Q ss_pred             eeCCeEEEe
Q 014962          282 MDVDTAVVS  290 (415)
Q Consensus       282 Ld~d~~l~a  290 (415)
                      +++.-++.+
T Consensus       246 ~~~~i~v~G  254 (306)
T 3ii7_A          246 VGSIVYVLA  254 (306)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEe
Confidence            655544443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=86.52  E-value=15  Score=36.16  Aligned_cols=83  Identities=14%  Similarity=0.050  Sum_probs=52.4

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCC--------cEEEEEeCCC--CCeEEEEEEEEEC-
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG--------SVLSSFKLEL--GETGKSMELVRVG-   77 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~--------~~i~s~~l~~--~E~~~si~~~~l~-   77 (415)
                      ..++++...++.++++|+.+.++|+..-   +..-..|++.|..++        +.+..+....  ...+.++   .+. 
T Consensus        86 ~~~~~~~~~v~~l~~spdg~~lav~~~s---gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v---~~~p  159 (434)
T 2oit_A           86 GLLVPMKFPIHHLALSCDNLTLSACMMS---SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDM---KWNP  159 (434)
T ss_dssp             CEEECCSSCEEEEEECTTSCEEEEEEEE---TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEE---EECS
T ss_pred             cccccCCCcccEEEEcCCCCEEEEEEec---cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEE---EECC
Confidence            3567888889999999999988875310   223457889886543        2333344332  2344443   443 


Q ss_pred             -CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           78 -HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        78 -~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                       +..+|+.|+.                -|.|.+|++.
T Consensus       160 ~~~~~las~s~----------------Dg~v~iwD~~  180 (434)
T 2oit_A          160 TVPSMVAVCLA----------------DGSIAVLQVT  180 (434)
T ss_dssp             SCTTEEEEEET----------------TSCEEEEEES
T ss_pred             CCCCEEEEEEC----------------CCeEEEEEcC
Confidence             2467777754                4678999887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=86.47  E-value=35  Score=35.91  Aligned_cols=48  Identities=15%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             CEEEEecCCCEEEEEEEee------------CCCcceeeEEEEeCCCCcEEEEEeCCCCC
Q 014962           19 KKVLYHSESRLLIVMRTEL------------NNDTCSSDICCVDPLSGSVLSSFKLELGE   66 (415)
Q Consensus        19 ~~I~y~~~~~~~~v~~~~~------------~~~~~~s~i~l~d~~t~~~i~s~~l~~~E   66 (415)
                      ..++|+|+.+++++.+.+.            ..+.+.++|..+|+.|++.+..+++.+++
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d  305 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD  305 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc
Confidence            3589999998888776443            22344567999999999999999987653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=86.40  E-value=33  Score=35.53  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             EEEEecCCCEEEEEEEeeC-----------------CCcceeeEEEEeCCCCcEEEEEeCCCCC
Q 014962           20 KVLYHSESRLLIVMRTELN-----------------NDTCSSDICCVDPLSGSVLSSFKLELGE   66 (415)
Q Consensus        20 ~I~y~~~~~~~~v~~~~~~-----------------~~~~~s~i~l~d~~t~~~i~s~~l~~~E   66 (415)
                      -.+|+|+.+++++.+....                 ++.+.++|.-+|+.|++.+..+++.+++
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d  313 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPND  313 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTC
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCC
Confidence            3688999888888875321                 2344578999999999999999987654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=85.90  E-value=24  Score=33.32  Aligned_cols=91  Identities=11%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             eEEEe--eeCCceEEEEe-C-C-----eEEEEeeCCCCccceeeee-ee---ccceEEEEEEE---eCCEEEEeecC-Cc
Q 014962          189 VLAIC--PYLDRYFLASA-G-N-----AFYVCGFPNDNPQRVRRFA-VG---RTRFMIMLLTA---HFTRIAVGDCR-DG  251 (415)
Q Consensus       189 V~al~--~~~g~yLl~~v-g-~-----~l~v~~~~~~~~~~L~~~a-~~---~~~~~i~sI~~---~~n~IlVGD~~-~S  251 (415)
                      +.+++  .=.|++|+++. + +     .|.+|++..++ + +.... ..   ........+..   .+++|++++.. ..
T Consensus       256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g-~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG-S-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS-C-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC-C-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence            55555  22467565543 3 3     79999996422 2 33211 11   11112334555   58899999875 68


Q ss_pred             EEEEEEEccCCeEEEEe--cCCCcceeEEEEeee
Q 014962          252 ILFYSYHEDARKLEQIY--CDPSQRLVADCVLMD  283 (415)
Q Consensus       252 v~ll~y~~~~~~L~~va--rD~~~~~vta~~~Ld  283 (415)
                      |.++..+.+  .|..++  .=+.|.++..|.++|
T Consensus       334 v~v~~~~~~--~l~~~~~~~~~~p~~~~~~~~~~  365 (365)
T 1jof_A          334 LEIYRWKDE--FLHRVARVRIPEPGFGMNAIWYD  365 (365)
T ss_dssp             EEEEEEETT--EEEEEEEEECCSTTEEEEEEEEC
T ss_pred             EEEEEEchh--hCceeeEEEcCCCcceeeeEecC
Confidence            888887764  565554  334566777777765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.65  E-value=22  Score=32.85  Aligned_cols=80  Identities=13%  Similarity=0.132  Sum_probs=46.5

Q ss_pred             eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---cEEEEEEEccCCeEEEEecCCCcceeEEEEee
Q 014962          207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVLM  282 (415)
Q Consensus       207 ~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L  282 (415)
                      .+.+|++..   ..+...+....+-.-.++.+.++.|+| |-...   .-.+..|+.+.++-..++.-+.+|.-.++..+
T Consensus       176 ~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  252 (318)
T 2woz_A          176 RVFIYNPKK---GDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL  252 (318)
T ss_dssp             CEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE
T ss_pred             eEEEEcCCC---CEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE
Confidence            478888875   234443332222222333445665554 53221   23467899999999999887778776666666


Q ss_pred             eCCeEEE
Q 014962          283 DVDTAVV  289 (415)
Q Consensus       283 d~d~~l~  289 (415)
                      ++.-++.
T Consensus       253 ~~~i~v~  259 (318)
T 2woz_A          253 AGSLYAI  259 (318)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            5544333

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=85.55  E-value=5.8  Score=41.70  Aligned_cols=63  Identities=14%  Similarity=0.070  Sum_probs=39.0

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc-------EEEEEeCCCCCeEEEEEEEEECCeeEEEEeee
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS-------VLSSFKLELGETGKSMELVRVGHEQVLVVGTS   87 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~-------~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~   87 (415)
                      +.+.++++|+++.++++.-+       +.|++.|..++.       .+.+++.....+...+..+.+..+. ++.|..
T Consensus       131 sv~svafSPDG~~LAsgs~D-------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~  200 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNED-------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS  200 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETT-------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET
T ss_pred             cEEEEEEcCCCCEEEEEcCC-------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC
Confidence            47789999999999888633       469999998875       3566553332122334444443333 555533

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=85.14  E-value=27  Score=33.29  Aligned_cols=55  Identities=11%  Similarity=-0.023  Sum_probs=43.3

Q ss_pred             EEEEeCCCccCEEEEecCCCEEEEEEEeeCC---CcceeeEEEEeCCCCcEEEEEeCCC
Q 014962            9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNN---DTCSSDICCVDPLSGSVLSSFKLEL   64 (415)
Q Consensus         9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~---~~~~s~i~l~d~~t~~~i~s~~l~~   64 (415)
                      +.++|.+..| .|+++|+.+.++|+......   +.....|.++|..+++.+..+.+.+
T Consensus        44 ~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           44 LGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             EEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             EEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            5789999999 99999999988887643321   2345679999999999999888754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=84.53  E-value=26  Score=36.09  Aligned_cols=47  Identities=11%  Similarity=0.046  Sum_probs=35.0

Q ss_pred             EEEEecCCCEEEEEEEeeC---------CCcceeeEEEEeCCCCcEEEEEeCCCCC
Q 014962           20 KVLYHSESRLLIVMRTELN---------NDTCSSDICCVDPLSGSVLSSFKLELGE   66 (415)
Q Consensus        20 ~I~y~~~~~~~~v~~~~~~---------~~~~~s~i~l~d~~t~~~i~s~~l~~~E   66 (415)
                      -++|+++.+++.+.+....         .+.+.++|..+|+.|++.+..+++.+++
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d  294 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD  294 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence            4789998888777654321         2344567999999999999999987653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=83.95  E-value=42  Score=34.63  Aligned_cols=50  Identities=10%  Similarity=0.046  Sum_probs=41.5

Q ss_pred             eEEEEeCCCccCEEEEe----cCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC
Q 014962            8 NVRKFHLGGTPKKVLYH----SESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE   63 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~----~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~   63 (415)
                      .+.+|+.+..|+.|+++    |+.+.++|+.      .+...|.++|..|++.+..+...
T Consensus       232 ~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n------~~~~~v~ViD~~t~~~~~~i~~~  285 (567)
T 1qks_A          232 TVAEIKIGSEARSIETSKMEGWEDKYAIAGA------YWPPQYVIMDGETLEPKKIQSTR  285 (567)
T ss_dssp             EEEEEECCSEEEEEEECCSTTCTTTEEEEEE------EETTEEEEEETTTCCEEEEEECC
T ss_pred             EeEEEecCCCCceeEEccccCCCCCEEEEEE------ccCCeEEEEECCCCcEEEEEecc
Confidence            46789999999999999    6888887775      34467999999999999887764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=83.86  E-value=26  Score=32.15  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=26.0

Q ss_pred             eeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEE
Q 014962           43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLV   83 (415)
Q Consensus        43 ~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lv   83 (415)
                      ...|.++|+.|++.+.++.....+.+.++..  ..+..+++
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~--~pdG~ilv   52 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAA--TKAGEILF   52 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCTTCCCCEEEE--CTTSCEEE
T ss_pred             CCEEEEEECCCCeEEEEeCCCccCCCcCeEE--CCCCCEEE
Confidence            3579999999999999998865444444332  23445555

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=83.72  E-value=26  Score=32.00  Aligned_cols=82  Identities=12%  Similarity=-0.087  Sum_probs=47.4

Q ss_pred             CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---cEEEEEEEccCCeEEEEecCCCcceeEEEEe
Q 014962          206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVL  281 (415)
Q Consensus       206 ~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~  281 (415)
                      +.+.+|++..   ..+...+....+..-.++.+.++.|++ |-...   .-.+..|+.+.++-..++.-+.+|.-.++..
T Consensus       173 ~~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~  249 (302)
T 2xn4_A          173 STVECYNATT---NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA  249 (302)
T ss_dssp             CCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             cEEEEEeCCC---CcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence            3477888765   234443332222222344455666555 53321   2246889999999999988777777666666


Q ss_pred             eeCCeEEEe
Q 014962          282 MDVDTAVVS  290 (415)
Q Consensus       282 Ld~d~~l~a  290 (415)
                      +++.-++.+
T Consensus       250 ~~~~i~v~G  258 (302)
T 2xn4_A          250 VNGLLYVVG  258 (302)
T ss_dssp             ETTEEEEEC
T ss_pred             ECCEEEEEC
Confidence            555444443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=81.90  E-value=39  Score=32.72  Aligned_cols=112  Identities=11%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             CCceEEEeee-CCceEEEEeC----CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCCcEEEEEEEc
Q 014962          186 PGMVLAICPY-LDRYFLASAG----NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRDGILFYSYHE  259 (415)
Q Consensus       186 ~g~V~al~~~-~g~yLl~~vg----~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~Sv~ll~y~~  259 (415)
                      .+.|.+++-- .|++|+.+..    ..|++|++...  + .+.................+.+|++ +..-....++.|+.
T Consensus       178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~-~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~  254 (415)
T 2hqs_A          178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--A-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  254 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--C-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--c-EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence            4677777633 4664554443    37999999752  2 2232333333444555567787774 44444556777888


Q ss_pred             cCCeEEEEecCCCcceeEEEEeeeCC-eE-EEeCCCC--cEEEEecC
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMDVD-TA-VVSDRKG--SIAVLSCS  302 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld~d-~~-l~aD~~g--Nl~vl~~~  302 (415)
                      ..+++..+...  ...+.++.+-.++ .+ .+++++|  .|+++...
T Consensus       255 ~~~~~~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          255 ASGQIRQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             TTCCEEECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCCEEeCcCC--CCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            77777665543  3467777775444 34 3455556  56666643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=80.68  E-value=32  Score=30.99  Aligned_cols=104  Identities=10%  Similarity=-0.054  Sum_probs=51.5

Q ss_pred             ceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccce-eeeeeec-cceEEEEE--EEeCCEEEEeecCCcEEEEEEEccC
Q 014962          188 MVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRV-RRFAVGR-TRFMIMLL--TAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       188 ~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L-~~~a~~~-~~~~i~sI--~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      .+..++-- .|+.|++.. +++|++|++..++  .+ .....+. ....+..|  +..| .|+|++ -.+  +.+|+++.
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g--~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~-~~~--v~~~~~~g  246 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARG--ETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA-GDG--VHVLTPDG  246 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSS--CEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE-TTE--EEEECTTS
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCC--cCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc-CCe--EEEECCCC
Confidence            34555532 466343333 3679999987432  23 1111111 11122233  3344 577877 444  57788875


Q ss_pred             CeEEEEecCCCcceeEEEEeee-C-CeEEEeCCCCcEEEEec
Q 014962          262 RKLEQIYCDPSQRLVADCVLMD-V-DTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       262 ~~L~~varD~~~~~vta~~~Ld-~-d~~l~aD~~gNl~vl~~  301 (415)
                      ..+..+... ..  ++++.|-. + +.+.++.. +.|+.++.
T Consensus       247 ~~~~~~~~~-~~--~~~~~f~~~d~~~L~v~t~-~~l~~~~~  284 (296)
T 3e5z_A          247 DELGRVLTP-QT--TSNLCFGGPEGRTLYMTVS-TEFWSIET  284 (296)
T ss_dssp             CEEEEEECS-SC--CCEEEEESTTSCEEEEEET-TEEEEEEC
T ss_pred             CEEEEEECC-CC--ceeEEEECCCCCEEEEEcC-CeEEEEEc
Confidence            555555432 22  67777742 2 34555544 45666653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=80.29  E-value=37  Score=31.47  Aligned_cols=57  Identities=21%  Similarity=0.193  Sum_probs=35.0

Q ss_pred             CccCEEEEecCCCEEEEEEEeeCC-----------------CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEE
Q 014962           16 GTPKKVLYHSESRLLIVMRTELNN-----------------DTCSSDICCVDPLSGSVLSSFKLELGETGKSME   72 (415)
Q Consensus        16 ~tp~~I~y~~~~~~~~v~~~~~~~-----------------~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~   72 (415)
                      ..|.-|+.+|+.++|+.......-                 ......|.++|+.+++++..+.-.....+.+++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia   97 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS   97 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE
Confidence            368899999999888554433210                 011247999999999887654422223455443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.93
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.87
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.73
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.62
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.61
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.56
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.54
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.51
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.38
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.3
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.17
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.99
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.68
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.6
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.49
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.36
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.01
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	95.7
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	95.59
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.52
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.78
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.73
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.69
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.52
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	94.24
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.14
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	93.6
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.57
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	93.42
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	91.35
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	91.11
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	89.5
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.8
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	88.5
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	88.21
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	87.29
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	85.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	82.7
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	80.59
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	80.58

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=0.0016  Score=57.96  Aligned_cols=118  Identities=9%  Similarity=0.165  Sum_probs=71.9

Q ss_pred             EecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeee---eeeccceEEEEEEEeCCEEEEeecCCcEEEEEE
Q 014962          183 TTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRF---AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY  257 (415)
Q Consensus       183 ~~~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~---a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y  257 (415)
                      ..-+++|++++-- .+.+|+++- ...+.+|++...  ..+...   ..+..+.........+++|+.|..-..+.++..
T Consensus       176 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         176 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN--FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT--TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccceEEEcCCCEEEEEEC
Confidence            3456788888743 456455543 356999998752  222221   122223333334456789999988888877655


Q ss_pred             EccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          258 HEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       258 ~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      +.................+.++.+.+++.++.+-.+|+|.+.++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         254 NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            443333333333334445666767788888888889999988764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=0.0056  Score=55.85  Aligned_cols=196  Identities=11%  Similarity=0.036  Sum_probs=116.3

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP   96 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~   96 (415)
                      +|.-|+++|+++.++.+.        ..++.+.|..+.+....|.- -.+.++|++.  ..+..||++|..         
T Consensus        19 ~~~~~a~~~~g~~l~~~~--------~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~--sp~g~~latg~~---------   78 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN--------GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKT--SPSGYYCASGDV---------   78 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE--------TTEEEEEETTCSSCCEEECC-CSSCEEEEEE--CTTSSEEEEEET---------
T ss_pred             CeEEEEEcCCCCEEEEEe--------CCEEEEEECCCCceeEEEcC-CCCCEEEEEE--eCCCCeEecccc---------
Confidence            666799999999987763        13488888887776665531 1245555533  235689998855         


Q ss_pred             CCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccce
Q 014962           97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ  176 (415)
Q Consensus        97 ~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  176 (415)
                             .|.|.+|++...                                                          ...
T Consensus        79 -------dg~i~iwd~~~~----------------------------------------------------------~~~   93 (311)
T d1nr0a1          79 -------HGNVRIWDTTQT----------------------------------------------------------THI   93 (311)
T ss_dssp             -------TSEEEEEESSST----------------------------------------------------------TCC
T ss_pred             -------CceEeeeeeecc----------------------------------------------------------ccc
Confidence                   478999988720                                                          011


Q ss_pred             EEEEEEEecCCceEEEeee-CCceEEEEeCC---eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCE-EEEeecCCc
Q 014962          177 LRLAYSTTWPGMVLAICPY-LDRYFLASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTR-IAVGDCRDG  251 (415)
Q Consensus       177 L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~---~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~-IlVGD~~~S  251 (415)
                      ++.. -....++|.+|+-- .|++|+++-..   .+.+|+|+..  +.+.....+......+.....+++ ++.|..-..
T Consensus        94 ~~~~-~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~--~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          94 LKTT-IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             EEEE-EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             cccc-cccccCccccccccccccccccccccccccccccccccc--cccccccccccccccccccccceeeecccccccc
Confidence            2211 13356889998733 35634443322   2778988752  223332222223333333334554 555766666


Q ss_pred             EEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962          252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       252 v~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +.+  |+....+....-+. ....++++.+- +...++.+..+|++.++....
T Consensus       171 i~i--~d~~~~~~~~~~~~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         171 VAI--FEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             EEE--EETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccc--cccccccccccccc-ccccccccccCcccccccccccccccccccccc
Confidence            655  45555555554444 34567777775 345778889999999988543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=0.0092  Score=52.64  Aligned_cols=200  Identities=11%  Similarity=0.082  Sum_probs=117.8

Q ss_pred             EEeCCC--ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962           11 KFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS   87 (415)
Q Consensus        11 ~i~L~~--tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~   87 (415)
                      ++.-|.  ....|+++|+.+.++.+..+       ..|++.|..+++.+..+.-.....+.++   .+. +..++++|. 
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~D-------g~v~vWd~~~~~~~~~~~~~h~~~v~~v---~~~~~g~~~~~~~-   74 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAE-------GHINSWDISTGISNRVFPDVHATMITGI---KTTSKGDLFTVSW-   74 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEECSSCSCSSCEEEE---EECTTSCEEEEET-
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEEEcCCCCCcEEEE---Eeeccceeecccc-
Confidence            344443  46789999998877665432       2599999988887755432223445544   343 445665541 


Q ss_pred             cCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCc
Q 014962           88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI  167 (415)
Q Consensus        88 ~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~  167 (415)
                                      .|.+.++.+...   .                                       ..       
T Consensus        75 ----------------d~~v~~~~~~~~---~---------------------------------------~~-------   89 (299)
T d1nr0a2          75 ----------------DDHLKVVPAGGS---G---------------------------------------VD-------   89 (299)
T ss_dssp             ----------------TTEEEEECSSSS---S---------------------------------------SC-------
T ss_pred             ----------------eeeEEEeccCCc---c---------------------------------------cc-------
Confidence                            245555554410   0                                       00       


Q ss_pred             cccccccceEEEEEEEecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEe
Q 014962          168 KLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVG  246 (415)
Q Consensus       168 ~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVG  246 (415)
                            ..+   .+.....+.+.+++-. .|++++++..+.+.+|+.+.     +.... .........+...++++++|
T Consensus        90 ------~~~---~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~-----~~~~~-~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          90 ------SSK---AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK-----LTEVP-ISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             ------TTS---CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE-----EEEEE-CSSCEEEEEECTTSCEEEEE
T ss_pred             ------ccc---ccccccccccccccccccccccccccccccccccccc-----ccccc-cccccccccccccccccccc
Confidence                  000   1113344555555532 45647777888888887643     22211 22233445555677899999


Q ss_pred             ecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962          247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       247 D~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~  303 (415)
                      ..-..+.++..+  .+++..+-....+.+++++.+-.+ ..+++++.+|.+.++....
T Consensus       155 ~~dg~i~~~d~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         155 GQDSKVHVYKLS--GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             ETTSEEEEEEEE--TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence            988888776655  444444433345667888887543 4788899999999998643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.62  E-value=0.018  Score=50.80  Aligned_cols=118  Identities=9%  Similarity=0.038  Sum_probs=72.6

Q ss_pred             EEecCCceEEEeeeC-CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962          182 STTWPGMVLAICPYL-DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE  259 (415)
Q Consensus       182 ~~~~~g~V~al~~~~-g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~  259 (415)
                      .......+....... +.+++.+ ....+.+|++..  .+.+.....+..+...+.+...++++++|..-..+.++.++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~--~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccccceeEeeeccccccceeEEeecCceEEEEECCC--CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc
Confidence            344455666666544 3424433 345689999875  233443333333333334444678999998877887665432


Q ss_pred             cCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          260 DARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       260 ~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                       ...+..+........++++.+-.+ ..++++..+|.|.++...
T Consensus       258 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~  300 (340)
T d1tbga_         258 -DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             -TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred             -cccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECC
Confidence             234455556666777888887644 477888899999999854

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=0.0032  Score=55.59  Aligned_cols=200  Identities=15%  Similarity=0.220  Sum_probs=118.8

Q ss_pred             ceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEe
Q 014962            6 RLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVG   85 (415)
Q Consensus         6 ~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVG   85 (415)
                      -|.+....++.+|+.+..+++...+++..        ...+.+++..+.+.+..+.+...  +.++   .. +...++||
T Consensus        71 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~-~~~~~~v~  136 (287)
T d1pgua2          71 VNGITKHEFGSQPKVASANNDGFTAVLTN--------DDDLLILQSFTGDIIKSVRLNSP--GSAV---SL-SQNYVAVG  136 (287)
T ss_dssp             ETTEEEEECSSCEEEEEECSSSEEEEEET--------TSEEEEEETTTCCEEEEEECSSC--EEEE---EE-CSSEEEEE
T ss_pred             cccccccccccceeeeeeccCCceEEEee--------cccceeeeccceeeeeeccccce--eeee---ec-cCcceeee
Confidence            35566666777777777777654444322        12477888888888887776643  2222   22 44677777


Q ss_pred             eecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCC
Q 014962           86 TSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCD  165 (415)
Q Consensus        86 T~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  165 (415)
                      +.-               .+.+.+|.+..                                                   
T Consensus       137 ~~~---------------~~~v~~~~~~~---------------------------------------------------  150 (287)
T d1pgua2         137 LEE---------------GNTIQVFKLSD---------------------------------------------------  150 (287)
T ss_dssp             ETT---------------TSCEEEEETTE---------------------------------------------------
T ss_pred             ccc---------------cceeeeeeccc---------------------------------------------------
Confidence            652               23456665541                                                   


Q ss_pred             CccccccccceEEEEEEEecCCceEEEee-eCCceEEEE-eCCeEEEEeeCCCCcccee-eeeeeccceEEEEEE-----
Q 014962          166 GIKLEETETWQLRLAYSTTWPGMVLAICP-YLDRYFLAS-AGNAFYVCGFPNDNPQRVR-RFAVGRTRFMIMLLT-----  237 (415)
Q Consensus       166 g~~~~~~~~~~L~l~~~~~~~g~V~al~~-~~g~yLl~~-vg~~l~v~~~~~~~~~~L~-~~a~~~~~~~i~sI~-----  237 (415)
                               .+.........+++|++|+- -+|.+|+++ ..++|++|++...  +.+. ....+..  .+.++.     
T Consensus       151 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~h~~--~v~~~~~~p~~  217 (287)
T d1pgua2         151 ---------LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--EVKTSRWAFRTS--KINAISWKPAE  217 (287)
T ss_dssp             ---------EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEECCSCCCSS--CEEEEEECCCC
T ss_pred             ---------cceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc--cccccccccccc--ccceeeecccc
Confidence                     11222222446788888873 346656665 4557999998752  1111 1112221  234443     


Q ss_pred             -------EeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEe
Q 014962          238 -------AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       238 -------~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~  300 (415)
                             ..+++++.|..-..+.++..+.....+..  ...+...|+++.+.+++.++.+-.+|.|.+.+
T Consensus       218 ~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~--~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--LNAHKDGVNNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             ------CCSCCEEEEEETTSCEEEEESSCTTCCEEE--TTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE--eCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence                   23567888887778877654332223332  34456789999998888888888899998875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.56  E-value=0.03  Score=51.58  Aligned_cols=125  Identities=10%  Similarity=-0.017  Sum_probs=78.4

Q ss_pred             eEEEEEE-EecCCceEEEee-eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCC
Q 014962          176 QLRLAYS-TTWPGMVLAICP-YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRD  250 (415)
Q Consensus       176 ~L~l~~~-~~~~g~V~al~~-~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~  250 (415)
                      +++.++. ..-+++|.+|+- -+|+||+.+ ....|++|++...  .......+....-.+.++.  ..++++++|..-+
T Consensus        40 ~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR--TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT--EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc--ccccccccccccccccccccccccccceeecccC
Confidence            3444433 335789999983 356745543 3357999999752  1111212222222344444  4678999999999


Q ss_pred             cEEEEEEEccCCeEEE-EecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          251 GILFYSYHEDARKLEQ-IYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       251 Sv~ll~y~~~~~~L~~-varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      .+.++.++........ .-.......++++.+-.+ ..++.+..+|.+.++...
T Consensus       118 ~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_         118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             cceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeec
Confidence            9999998876654332 334445567888888544 367778889999988754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.022  Score=51.59  Aligned_cols=189  Identities=6%  Similarity=0.037  Sum_probs=111.7

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM   95 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~   95 (415)
                      ....++++|+...++.+..+       ..|++.|..+++....+. .....+.++   .+. +..++++|+.        
T Consensus       143 ~v~~~~~~~~~~~l~s~~~d-------~~i~~~~~~~~~~~~~~~-~~~~~v~~l---~~s~~~~~~~~~~~--------  203 (337)
T d1gxra_         143 ACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQ-GHTDGASCI---DISNDGTKLWTGGL--------  203 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEEC-CCSSCEEEE---EECTTSSEEEEEET--------
T ss_pred             cccccccccccccccccccc-------cccccccccccccccccc-ccccccccc---cccccccccccccc--------
Confidence            34456667766665544322       248888888877665433 234445554   343 4567777754        


Q ss_pred             CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962           96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW  175 (415)
Q Consensus        96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  175 (415)
                              .|.+.+|++..                                                             
T Consensus       204 --------d~~v~i~d~~~-------------------------------------------------------------  214 (337)
T d1gxra_         204 --------DNTVRSWDLRE-------------------------------------------------------------  214 (337)
T ss_dssp             --------TSEEEEEETTT-------------------------------------------------------------
T ss_pred             --------ccccccccccc-------------------------------------------------------------
Confidence                    46777777651                                                             


Q ss_pred             eEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEE
Q 014962          176 QLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL  253 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~  253 (415)
                       .+.+......++|++++-- ++.+|+++ ..+.+.+|++...  +.. ....+..+.........+++++.|..-..+.
T Consensus       215 -~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~  290 (337)
T d1gxra_         215 -GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--DKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             -TEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--CEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             -ceeecccccccceEEEEEcccccccceecccccccccccccc--ccc-cccccccccceEEECCCCCEEEEEeCCCeEE
Confidence             0123345678899998733 45645544 4566999999863  222 2222333333333344667888887766665


Q ss_pred             EEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEec
Q 014962          254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSC  301 (415)
Q Consensus       254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~  301 (415)
                      ++  +...++....-.  ....++++.|-.+ ..++.+..+|.|.++++
T Consensus       291 iw--d~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         291 AW--RTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE--ETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EE--ECCCCCEEEEcc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            54  555544443333  3457888887644 46777788899988863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=0.032  Score=50.55  Aligned_cols=209  Identities=11%  Similarity=0.107  Sum_probs=114.5

Q ss_pred             CCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc--EEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCC
Q 014962           14 LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS--VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG   91 (415)
Q Consensus        14 L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~--~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~   91 (415)
                      ++..|..++|+|..+.++++..+      ...|+.+|.....  .+..+.-.....++|++.--..+..||+-|..    
T Consensus        16 ~~~~~t~l~~~~~~~~la~~~~~------~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~----   85 (325)
T d1pgua1          16 QRNFTTHLSYDPTTNAIAYPCGK------SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE----   85 (325)
T ss_dssp             CTTCCCCCEEETTTTEEEEEETT------EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET----
T ss_pred             CCCCeEEEEECCCCCEEEEEeCC------CEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC----
Confidence            44477789999999998877522      2246667654433  33444333334555543311124578876633    


Q ss_pred             CCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccc
Q 014962           92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE  171 (415)
Q Consensus        92 ~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~  171 (415)
                                  .|.|.+|++....                                                   .+  
T Consensus        86 ------------Dg~i~iWd~~~~~---------------------------------------------------~~--  100 (325)
T d1pgua1          86 ------------SGKVIVWGWTFDK---------------------------------------------------ES--  100 (325)
T ss_dssp             ------------TSEEEEEEEEEEG---------------------------------------------------GG--
T ss_pred             ------------CCCEEEeeecCCc---------------------------------------------------ce--
Confidence                        5789999998410                                                   00  


Q ss_pred             cccceEEEEEE-EecCCceEEEee-eCCceEEEEeC---CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCE-EEE
Q 014962          172 TETWQLRLAYS-TTWPGMVLAICP-YLDRYFLASAG---NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTR-IAV  245 (415)
Q Consensus       172 ~~~~~L~l~~~-~~~~g~V~al~~-~~g~yLl~~vg---~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~-IlV  245 (415)
                       ...+..+..+ ....++|.+|+- ..|++|+++.+   ..+.+|.|...  +.+.....+..+.....+...+++ ++.
T Consensus       101 -~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1         101 -NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             -TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             -eeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc--ccceeeeecccccccccccccccceEEE
Confidence             0011222221 335788999883 45674554432   34788888752  334332222323233333334554 455


Q ss_pred             eecCCcEEEEEEEccCCeEEEEe--cCCCcceeEEEEeee-C-CeEEEeCCCCcEEEEecC
Q 014962          246 GDCRDGILFYSYHEDARKLEQIY--CDPSQRLVADCVLMD-V-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       246 GD~~~Sv~ll~y~~~~~~L~~va--rD~~~~~vta~~~Ld-~-d~~l~aD~~gNl~vl~~~  302 (415)
                      |..-.++.+  |+....++..--  ......+++++.|-. . ..++.+..+|.|.++...
T Consensus       178 ~~~d~~v~~--~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         178 VGDDGSVVF--YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             EETTTEEEE--EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             eeccccccc--ccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            655556644  454444433322  234456788888753 3 356778889999998743

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.38  E-value=0.0071  Score=55.15  Aligned_cols=114  Identities=11%  Similarity=0.002  Sum_probs=67.1

Q ss_pred             CCceEEEee-eCCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          186 PGMVLAICP-YLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       186 ~g~V~al~~-~~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      .+.|++|+- -.|.+++++  -...|.+|++..  .+.+.....+..+...+.....++++++|..-..+.++.... ..
T Consensus       146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~--~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~-~~  222 (311)
T d1nr0a1         146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GT  222 (311)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CC
T ss_pred             ccccccccccccceeeecccccccccccccccc--cccccccccccccccccccCcccccccccccccccccccccc-cc
Confidence            456777762 135544543  235699999975  222333222333333444444678999998888886654332 22


Q ss_pred             eEEEEecCC-----CcceeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962          263 KLEQIYCDP-----SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       263 ~L~~varD~-----~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~  302 (415)
                      ....+..+.     ...+|+++.|- ++..++.+..+|.|.++.+.
T Consensus       223 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            233332222     23578888885 34577788889999999854

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.063  Score=49.27  Aligned_cols=199  Identities=10%  Similarity=0.117  Sum_probs=118.5

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCC-eEEEEEEEEE-CCeeEEEEeeecCCCCCC
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE-TGKSMELVRV-GHEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E-~~~si~~~~l-~~~~~lvVGT~~~~~~~~   94 (415)
                      -...++++|+.+.++++..+       ..|++.|..+.+......|..++ .|.|+   .| .+..+|+.|..       
T Consensus         9 pIt~~~~s~dg~~la~~~~~-------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l---~fsp~~~~l~s~s~-------   71 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNN-------HEVHIYEKSGNKWVQVHELKEHNGQVTGV---DWAPDSNRIVTCGT-------   71 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSS-------SEEEEEEEETTEEEEEEEEECCSSCEEEE---EEETTTTEEEEEET-------
T ss_pred             CeEEEEECCCCCEEEEEeCC-------CEEEEEECCCCCEEEEEEecCCCCCEEEE---EECCCCCEEEEEEC-------
Confidence            35899999999888776422       35999998777655555565544 34444   33 35578887743       


Q ss_pred             CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962           95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET  174 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  174 (415)
                               -|.|.+|++...                                                          .
T Consensus        72 ---------D~~i~vWd~~~~----------------------------------------------------------~   84 (371)
T d1k8kc_          72 ---------DRNAYVWTLKGR----------------------------------------------------------T   84 (371)
T ss_dssp             ---------TSCEEEEEEETT----------------------------------------------------------E
T ss_pred             ---------CCeEEEEeeccc----------------------------------------------------------c
Confidence                     367899988820                                                          0


Q ss_pred             ceEEEEEEEecCCceEEEeee-CCceEEEEeCC-eEEEEeeCCCCccceeeeeee-ccceEEEEEE--EeCCEEEEeecC
Q 014962          175 WQLRLAYSTTWPGMVLAICPY-LDRYFLASAGN-AFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLT--AHFTRIAVGDCR  249 (415)
Q Consensus       175 ~~L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~-~l~v~~~~~~~~~~L~~~a~~-~~~~~i~sI~--~~~n~IlVGD~~  249 (415)
                      ++. .+......++|++++-- .|++|+++.+. .+.+|.+.......... ... .....|.++.  ..+.+++.|..-
T Consensus        85 ~~~-~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          85 WKP-TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             EEE-EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccc-ccccccccccccccccccccccceeecccCcceeeeeeccccccccc-ccccccccccccccccccccceeccccC
Confidence            111 11113346778888732 46657766554 48899887643211111 111 1122345554  456789889888


Q ss_pred             CcEEEEEEEccC----------------CeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecC
Q 014962          250 DGILFYSYHEDA----------------RKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       250 ~Sv~ll~y~~~~----------------~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~  302 (415)
                      ..+.++......                +.+. ........++.++.|-.+ ..++.+..+|.|.++...
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELM-FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE-EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             cEEEEEeeccCccccccccccccccccceeee-eeccCccCcEEEEEeecccccccccccCCcceEEeee
Confidence            888776543211                1122 223345667888887543 466667778999988864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.08  Score=47.83  Aligned_cols=115  Identities=8%  Similarity=0.088  Sum_probs=62.6

Q ss_pred             cCCceEEEeeeC-CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          185 WPGMVLAICPYL-DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       185 ~~g~V~al~~~~-g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      ..++|.+++... +.+++.+ ....+.+|+....  ..+...........+......+++|++|..-..+.++..  ...
T Consensus       162 h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~--~~~  237 (388)
T d1erja_         162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG--QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS--ETG  237 (388)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEET--TTC
T ss_pred             ccccccccccccccccccccccceeeeeeecccc--ccccccccccccccccccCCCCCeEEEEcCCCeEEEeec--ccC
Confidence            467788877543 3434444 3456889988752  222221221211111111224678888887777766543  332


Q ss_pred             eEE-EEecC-----CCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          263 KLE-QIYCD-----PSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       263 ~L~-~varD-----~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ... .+...     .....++++.+-. ...++++..+|.+.++.+..
T Consensus       238 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence            222 21111     1245688888764 45788889999999998644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.11  Score=46.54  Aligned_cols=201  Identities=12%  Similarity=0.049  Sum_probs=116.3

Q ss_pred             EEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc---EEEEEeCCC-CCeEEEEEEEEECCeeEEEEee
Q 014962           11 KFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS---VLSSFKLEL-GETGKSMELVRVGHEQVLVVGT   86 (415)
Q Consensus        11 ~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~---~i~s~~l~~-~E~~~si~~~~l~~~~~lvVGT   86 (415)
                      .+.-......|+++|+++.++.+. +       .+|++.|-.+..   .+....... ...+.|++.  ..+..+|++|.
T Consensus        47 ~~~H~~~V~~v~fs~~g~~latg~-d-------g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~--s~dg~~l~s~~  116 (337)
T d1gxra_          47 TLNHGEVVCAVTISNPTRHVYTGG-K-------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL--LPDGCTLIVGG  116 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-B-------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE--CTTSSEEEEEE
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEE-C-------CEEEEEEccCCcccceeEEeeecCCCCcEEEEEE--cCCCCEEEEee
Confidence            344456778899999988876542 1       259999865543   334444333 334555443  23568888875


Q ss_pred             ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962           87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG  166 (415)
Q Consensus        87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g  166 (415)
                      .                -|.|.+|++...                                                   
T Consensus       117 ~----------------dg~i~iwd~~~~---------------------------------------------------  129 (337)
T d1gxra_         117 E----------------ASTLSIWDLAAP---------------------------------------------------  129 (337)
T ss_dssp             S----------------SSEEEEEECCCC---------------------------------------------------
T ss_pred             c----------------cccccccccccc---------------------------------------------------
Confidence            4                478999988720                                                   


Q ss_pred             ccccccccceEEEEEE-EecCCceEEEeee-CCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEE
Q 014962          167 IKLEETETWQLRLAYS-TTWPGMVLAICPY-LDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRI  243 (415)
Q Consensus       167 ~~~~~~~~~~L~l~~~-~~~~g~V~al~~~-~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~I  243 (415)
                               +.++..+ ......|.+++-- ++.+|+.+.. ..+.+|++..  .+..+....+..+.....+...++++
T Consensus       130 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~~  198 (337)
T d1gxra_         130 ---------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             -----------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ---------ccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence                     1111221 2334566666533 3553444333 4588999875  23333322223333333344567899


Q ss_pred             EEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          244 AVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       244 lVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ++|..-..+.++  +...++....-.  ....++++.+-. .+.++++..+|.+.++....
T Consensus       199 ~~~~~d~~v~i~--d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         199 WTGGLDNTVRSW--DLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEEETTSEEEEE--ETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             cccccccccccc--ccccceeecccc--cccceEEEEEcccccccceeccccccccccccc
Confidence            999888887665  444443322221  345677887753 34777888999999998643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.2  Score=44.94  Aligned_cols=195  Identities=10%  Similarity=0.090  Sum_probs=107.3

Q ss_pred             cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 014962           18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS   97 (415)
Q Consensus        18 p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~   97 (415)
                      .+.|+++|+.+.++.+..+       ..|++.|..+++.+..+.-. ...+.++..  ..+...+++|+.          
T Consensus       124 V~~l~~s~~~~~l~s~~~d-------g~v~i~~~~~~~~~~~~~~h-~~~v~~~~~--~~~~~~~~~~~~----------  183 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAED-------RLIRIWDIENRKIVMILQGH-EQDIYSLDY--FPSGDKLVSGSG----------  183 (388)
T ss_dssp             EEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCC-SSCEEEEEE--CTTSSEEEEEET----------
T ss_pred             EEEEEECCCCCcceecccc-------cccccccccccccccccccc-ccccccccc--cccccccccccc----------
Confidence            4678899998887766533       35999999888877655432 334443332  134467777754          


Q ss_pred             CCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceE
Q 014962           98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL  177 (415)
Q Consensus        98 ~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L  177 (415)
                            .|.+.+|+...                                                            ...
T Consensus       184 ------~~~i~~~d~~~------------------------------------------------------------~~~  197 (388)
T d1erja_         184 ------DRTVRIWDLRT------------------------------------------------------------GQC  197 (388)
T ss_dssp             ------TSEEEEEETTT------------------------------------------------------------TEE
T ss_pred             ------ceeeeeeeccc------------------------------------------------------------ccc
Confidence                  45677776551                                                            011


Q ss_pred             EEEEEEecCCceEEEe--eeCCceEEEE-eCCeEEEEeeCCCCccceeeeeee-----ccceEEEEEE--EeCCEEEEee
Q 014962          178 RLAYSTTWPGMVLAIC--PYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVG-----RTRFMIMLLT--AHFTRIAVGD  247 (415)
Q Consensus       178 ~l~~~~~~~g~V~al~--~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~-----~~~~~i~sI~--~~~n~IlVGD  247 (415)
                      .  ......+...++.  +..|.+|+++ ..+.+.+|+....  ..+......     ...-.|.+|.  ..+++|++|.
T Consensus       198 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         198 S--LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG--FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             E--EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC--CEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             c--cccccccccccccccCCCCCeEEEEcCCCeEEEeecccC--ccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            1  1122333333333  3356644443 4466899998752  222221110     0011345554  4567899998


Q ss_pred             cCCcEEEEEEEccCCeE---------EEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecC
Q 014962          248 CRDGILFYSYHEDARKL---------EQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       248 ~~~Sv~ll~y~~~~~~L---------~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~  302 (415)
                      .-..+.++.++......         ...........++++.+-. +..++++..+|.|.+++..
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            88888777654322111         1122223345677777753 4477888999999999854

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.60  E-value=0.19  Score=43.63  Aligned_cols=110  Identities=9%  Similarity=0.035  Sum_probs=68.0

Q ss_pred             cCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEcc
Q 014962          185 WPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHED  260 (415)
Q Consensus       185 ~~g~V~al~~~-~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~  260 (415)
                      ..++|++|+-. +|.+|+++. ...+.+|++...  +.+...........+.++.  ..+++|++|..-..|.++  +..
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iw--d~~  300 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW--DAL  300 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEE--ETT
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc--ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEE--ECC
Confidence            46789988743 466455543 456899999862  3333323333333344444  467799999888888665  544


Q ss_pred             CCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEE
Q 014962          261 ARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVL  299 (415)
Q Consensus       261 ~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl  299 (415)
                      .+++...-+ .+...|+++.+-.+ ..++.+..+|.|.+.
T Consensus       301 ~~~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         301 KADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             TCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            444433322 23457888888644 467778889998775

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.22  Score=42.99  Aligned_cols=105  Identities=6%  Similarity=0.050  Sum_probs=66.2

Q ss_pred             eeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCC
Q 014962          193 CPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDP  271 (415)
Q Consensus       193 ~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~  271 (415)
                      ..+++.+|+.+ ..+.|++|++...  +.+....  .....+.++...+++++.|..-..+.++.....+......+...
T Consensus       183 ~~~~~~~l~s~~~dg~i~~~d~~~~--~~~~~~~--~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  258 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDTSIRVWDVETG--NCIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK  258 (342)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTC--CEEEEEC--CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred             ccCCCCEEEEEeCCCeEEEeecccc--eeeeEec--ccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccce
Confidence            34567645544 4566999999762  3343322  22335677888899999999988887765443222222222233


Q ss_pred             CcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          272 SQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       272 ~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      ....+.++.+ +.+.++.+..+|.|.++.+.
T Consensus       259 ~~~~~~~~~~-~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         259 HQSAVTCLQF-NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CSSCEEEEEE-CSSEEEEEETTSEEEEEETT
T ss_pred             eeeceeeccc-CCCeeEEEcCCCEEEEEECC
Confidence            3444544444 67788888899999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.25  Score=42.56  Aligned_cols=113  Identities=10%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             CCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeee-eeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962          186 PGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       186 ~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a-~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      .+.|.++.. .+.+|+++ ..+.+++|++...  +...... .......+..+...+++++.|..-..|.++  +...++
T Consensus       217 ~~~v~~~~~-~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iw--d~~tg~  291 (342)
T d2ovrb2         217 QSLTSGMEL-KDNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW--DLKTGE  291 (342)
T ss_dssp             CSCEEEEEE-ETTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEE--ETTTCC
T ss_pred             ccceeEEec-CCCEEEEEcCCCEEEEEecccc--cccccccccceeeeceeecccCCCeeEEEcCCCEEEEE--ECCCCC
Confidence            456777664 45546654 3456999998763  2222211 112233567777789999999877777554  544444


Q ss_pred             E-EEEec---CCCcceeEEEEeeeCC-eEEEeCCCCc----EEEEecCC
Q 014962          264 L-EQIYC---DPSQRLVADCVLMDVD-TAVVSDRKGS----IAVLSCSD  303 (415)
Q Consensus       264 L-~~var---D~~~~~vta~~~Ld~d-~~l~aD~~gN----l~vl~~~~  303 (415)
                      + ..+..   ......|+++.+-.+. .++++..+|.    |+++.++.
T Consensus       292 ~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            3 23322   2234468888886554 4556677775    88888764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.31  Score=43.51  Aligned_cols=112  Identities=10%  Similarity=0.023  Sum_probs=63.8

Q ss_pred             cCCceEEEeee--CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccce--EEEEEE-EeCCEEEEeecCCcEEEEEEE
Q 014962          185 WPGMVLAICPY--LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRF--MIMLLT-AHFTRIAVGDCRDGILFYSYH  258 (415)
Q Consensus       185 ~~g~V~al~~~--~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~--~i~sI~-~~~n~IlVGD~~~Sv~ll~y~  258 (415)
                      ..++|++++--  .+.+|+++ ..+.|++|+....  +.+........+.  .+.++. ..+.+++.|..-..+.+  |+
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~--~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i--wd  279 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV--WD  279 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC--CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE--EE
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeeccc--cccccccccccccccceeeeeccCCCEEEEEeCCCeEEE--EE
Confidence            45668887632  35634433 4566999998752  3333322222221  234444 24678888887777766  45


Q ss_pred             ccCCeEEE-EecCCCcceeE--EEEeeeCCeEEEeCCCCcEEEEe
Q 014962          259 EDARKLEQ-IYCDPSQRLVA--DCVLMDVDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       259 ~~~~~L~~-varD~~~~~vt--a~~~Ld~d~~l~aD~~gNl~vl~  300 (415)
                      .+.+++.. +.-......+.  ++..-.+..++.+..+|.|.+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         280 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             TTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            55555433 33344444433  44333455788888899999876

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=95.70  E-value=0.52  Score=40.16  Aligned_cols=51  Identities=14%  Similarity=0.279  Sum_probs=41.0

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCC
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL   64 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~   64 (415)
                      -+++|+++..|+.|+++|+.+.++|+...      ...|+++|..+++.+..+....
T Consensus        24 ~~~~i~~g~~p~~va~spdG~~l~v~~~~------~~~i~v~d~~t~~~~~~~~~~~   74 (301)
T d1l0qa2          24 VTATIPVGSNPMGAVISPDGTKVYVANAH------SNDVSIIDTATNNVIATVPAGS   74 (301)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEEGG------GTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEECCCCceEEEEeCCCCEEEEEECC------CCEEEEEECCCCceeeeeeccc
Confidence            35789999999999999999987776532      2469999999999988776543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.51  Score=39.39  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=67.7

Q ss_pred             ecCCceEEEeeeCCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962          184 TWPGMVLAICPYLDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       184 ~~~g~V~al~~~~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      .-...|.++...... ++. +-...+.+|+....  +.+....  .....+..+...+++++.|..-..+.++  +....
T Consensus       136 ~~~~~v~~~~~~~~~-~~~~s~d~~i~~~d~~~~--~~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~--d~~~~  208 (293)
T d1p22a2         136 GHRAAVNVVDFDDKY-IVSASGDRTIKVWNTSTC--EFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLW--DIECG  208 (293)
T ss_dssp             CCSSCEEEEEEETTE-EEEEETTSEEEEEETTTC--CEEEEEE--CCSSCEEEEEEETTEEEEEETTSCEEEE--ETTTC
T ss_pred             ccccccccceecccc-cccccCCCceeeecCCCC--cEEEEEc--ccccccccccCCCCeEEEecCCCEEEEE--ecccc
Confidence            345667766655554 444 45556889998752  3333322  2233466677778999999998888665  44444


Q ss_pred             eEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962          263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       263 ~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +....... ....+.+ ...+...++.+..+|.|.++.+..
T Consensus       209 ~~~~~~~~-~~~~v~~-~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         209 ACLRVLEG-HEELVRC-IRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             CEEEEECC-CSSCEEE-EECCSSEEEEEETTSCEEEEEHHH
T ss_pred             eeeeeecc-cceeeee-ccccceEEEEEcCCCEEEEEECCC
Confidence            44333332 2223333 334666888899999999998543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.52  E-value=0.65  Score=40.06  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=49.5

Q ss_pred             eEEEEeCC---CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe-EEEEEEEEEC-CeeEE
Q 014962            8 NVRKFHLG---GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET-GKSMELVRVG-HEQVL   82 (415)
Q Consensus         8 ~i~~i~L~---~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~-~~si~~~~l~-~~~~l   82 (415)
                      .++++++.   ..|..|+++|+.+.++|+.+.      ...|.++|..|++.+.++....... ......+.+. +..++
T Consensus        23 ~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             EEEEEECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEE
T ss_pred             EEEEEECCCCCCCccEEEECCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEE
Confidence            46678875   368999999999987776422      2469999999999999888765433 2333334443 34555


Q ss_pred             EEeee
Q 014962           83 VVGTS   87 (415)
Q Consensus        83 vVGT~   87 (415)
                      +++..
T Consensus        97 ~~~~~  101 (337)
T d1pbyb_          97 AIYES  101 (337)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            54433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.78  E-value=1.1  Score=38.64  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             EEEEeC--CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe--EEEEEEEEEC-CeeEEE
Q 014962            9 VRKFHL--GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET--GKSMELVRVG-HEQVLV   83 (415)
Q Consensus         9 i~~i~L--~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~--~~si~~~~l~-~~~~lv   83 (415)
                      ++++++  +.-|..|+++|+.+.++|....      ...|.++|..+++.+.++.......  ......+.+. +..++.
T Consensus        31 ~~t~~~~~~~~p~~l~~spDG~~l~v~~~~------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          31 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             EEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcceEEECCCCCEEEEEECC------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEE
Confidence            455565  5689999999999987776532      2469999999999998887654432  2223344444 334444


Q ss_pred             Ee
Q 014962           84 VG   85 (415)
Q Consensus        84 VG   85 (415)
                      |+
T Consensus       105 v~  106 (346)
T d1jmxb_         105 AT  106 (346)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.73  E-value=1  Score=38.14  Aligned_cols=101  Identities=16%  Similarity=0.135  Sum_probs=55.3

Q ss_pred             EeCCeEEEEeeCCCCcc--ceeeee--eeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEE
Q 014962          203 SAGNAFYVCGFPNDNPQ--RVRRFA--VGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVAD  278 (415)
Q Consensus       203 ~vg~~l~v~~~~~~~~~--~L~~~a--~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta  278 (415)
                      +....+.+|++......  ......  ..........+...+++++.|..-..+.++..+...................+
T Consensus       119 ~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (342)
T d1yfqa_         119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD  198 (342)
T ss_dssp             ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE
T ss_pred             ccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceee
Confidence            44566888887531110  011100  11112245566777889999998888877665443332222223333333444


Q ss_pred             EEee--eCCeEEEeCCCCcEEEEecCC
Q 014962          279 CVLM--DVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       279 ~~~L--d~d~~l~aD~~gNl~vl~~~~  303 (415)
                      ....  +...++.+..+|++.+...+.
T Consensus       199 ~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         199 VALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             eEeecCCCCEEEeecCCCeEEEEEecC
Confidence            4433  344777888889988887654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=1  Score=37.84  Aligned_cols=100  Identities=7%  Similarity=0.084  Sum_probs=58.7

Q ss_pred             eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe-EEEEecCCC
Q 014962          195 YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK-LEQIYCDPS  272 (415)
Q Consensus       195 ~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~-L~~varD~~  272 (415)
                      ..+.+++++ ..+.+.+|++..  .+.+.....+..+.........+++|+.|..-..|.++.++  .++ +..+.  ..
T Consensus       215 ~~~~~~~~~~~d~~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~--~h  288 (317)
T d1vyhc1         215 KPGPFLLSGSRDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--NKRCMKTLN--AH  288 (317)
T ss_dssp             --CCEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT--TSCCCEEEE--CC
T ss_pred             cCCceeEeccCCCEEEEEECCC--CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC--CCcEEEEEc--CC
Confidence            345534444 345688999875  23444433334343444444567789999877777666543  333 22332  23


Q ss_pred             cceeEEEEeee-CCeEEEeCCCCcEEEEe
Q 014962          273 QRLVADCVLMD-VDTAVVSDRKGSIAVLS  300 (415)
Q Consensus       273 ~~~vta~~~Ld-~d~~l~aD~~gNl~vl~  300 (415)
                      ...|+++.|-. ...++.+..+|.|.+++
T Consensus       289 ~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            45688888753 34788888899988753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.52  E-value=1  Score=38.33  Aligned_cols=118  Identities=14%  Similarity=0.092  Sum_probs=70.1

Q ss_pred             EEEEecCCceEEEeeeCCceEEEEeC--CeEEEEeeCCCCccceeee-eeeccceEEEEEEEeCCEEEEeecCCcEEEEE
Q 014962          180 AYSTTWPGMVLAICPYLDRYFLASAG--NAFYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYS  256 (415)
Q Consensus       180 ~~~~~~~g~V~al~~~~g~yLl~~vg--~~l~v~~~~~~~~~~L~~~-a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~  256 (415)
                      +.......++.+++.-... ++++..  +.+.+|++...  +..... .....+...+.....++++++|+.-..+.++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d  190 (287)
T d1pgua2         114 IKSVRLNSPGSAVSLSQNY-VAVGLEEGNTIQVFKLSDL--EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD  190 (287)
T ss_dssp             EEEEECSSCEEEEEECSSE-EEEEETTTSCEEEEETTEE--EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeccccceeeeeeccCcc-eeeeccccceeeeeecccc--ceeeeeeeccCCceeEEEeccCcccccccccccccccee
Confidence            4445567778887766555 666544  45899988642  111110 11222333334445678999999999987654


Q ss_pred             EEccCCeEEEEecCCCcceeEEEEe-----------eeCCeEEEeCCCCcEEEEecC
Q 014962          257 YHEDARKLEQIYCDPSQRLVADCVL-----------MDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       257 y~~~~~~L~~varD~~~~~vta~~~-----------Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                        ...+.....-.......+.++.+           .+...++.+..+|+|+++...
T Consensus       191 --~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         191 --LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             --TTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             --ecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence              44444433223344455666654           233467778889999999853

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.47  Score=41.25  Aligned_cols=124  Identities=12%  Similarity=0.052  Sum_probs=71.4

Q ss_pred             eEEEEEEEecCCceEEEe-eeCCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccce--EEEEEEEeCCEEEEeecC-
Q 014962          176 QLRLAYSTTWPGMVLAIC-PYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRF--MIMLLTAHFTRIAVGDCR-  249 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~-~~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~--~i~sI~~~~n~IlVGD~~-  249 (415)
                      .|+++...+..+.|.+|+ .=.|++|+++.  .+.|.+|++..++ ..++.........  .-..+...|+++++++.. 
T Consensus        26 ~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~-~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~  104 (333)
T d1ri6a_          26 ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-GALTFAAESALPGSLTHISTDHQGQFVFVGSYNA  104 (333)
T ss_dssp             CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT
T ss_pred             CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEeeecccCCCceEEEEcCCCCEEeecccCC
Confidence            577777778889999886 33578786766  4679999997643 2232222222222  234556678899999864 


Q ss_pred             CcEEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCC-CcEEEEec
Q 014962          250 DGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRK-GSIAVLSC  301 (415)
Q Consensus       250 ~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~-gNl~vl~~  301 (415)
                      .++.++...... ..........+.++.++.+-. ...++.++.. ..+.++..
T Consensus       105 ~~v~~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_         105 GNVSVTRLEDGL-PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             TEEEEEEEETTE-EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             Cceeeecccccc-ceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            466666554322 233333444555666655543 3345555543 34666554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.14  E-value=1.6  Score=38.01  Aligned_cols=101  Identities=12%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             EEEE--eCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcce
Q 014962          200 FLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRL  275 (415)
Q Consensus       200 Ll~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~  275 (415)
                      |+++  -+++|++|+...   +.+...+.....-.+..|.  ..|+ |+|+|....-.+..|+++..-+..++.+.....
T Consensus       170 i~v~d~~~~~V~~~d~~G---~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~  245 (279)
T d1q7fa_         170 IFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLISALESKVKHAQ  245 (279)
T ss_dssp             EEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEEEEEESSCCSC
T ss_pred             EEeeeccccceeeeecCC---ceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCEEEEEeCCCCCCC
Confidence            4444  445677777653   3444433211111344444  4555 889998765456778876554556665555555


Q ss_pred             eEEEEeeeCCeEEEeCCCCcEEEEecCCC
Q 014962          276 VADCVLMDVDTAVVSDRKGSIAVLSCSDR  304 (415)
Q Consensus       276 vta~~~Ld~d~~l~aD~~gNl~vl~~~~~  304 (415)
                      ...+.+-.+..++++|.+.-|.++++.+-
T Consensus       246 p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         246 CFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             EeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            66666555568888998888999997653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.60  E-value=0.44  Score=41.17  Aligned_cols=111  Identities=13%  Similarity=0.140  Sum_probs=64.7

Q ss_pred             CCce-EEEeeeCCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEEccCC
Q 014962          186 PGMV-LAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYHEDAR  262 (415)
Q Consensus       186 ~g~V-~al~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~~~~~  262 (415)
                      .+.| +|+ .+.|.+|+.|- ...|.+|++..  .+.++....+..+  |.+|.. .+++++.|..-..+.++.+  ...
T Consensus        12 ~~~vitc~-~~~~~~l~tgs~Dg~i~vWd~~~--~~~~~~l~~H~~~--V~~l~~s~~~~l~s~s~D~~i~iw~~--~~~   84 (355)
T d1nexb2          12 MTSVITCL-QFEDNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGG--VWALKYAHGGILVSGSTDRTVRVWDI--KKG   84 (355)
T ss_dssp             SSSCEEEE-EEETTEEEEEETTTEEEEEETTT--TEEEEEEECCSSC--EEEEEEETTTEEEEEETTCCEEEEET--TTT
T ss_pred             CCCcEEEE-EECCCEEEEEeCCCeEEEEECCC--CcEEEEEECCCCC--EEEEEEcCCCEEEEEecccccccccc--ccc
Confidence            3444 554 57788555543 35799999975  3445554444433  555543 4678888888888866554  444


Q ss_pred             eEEEEecCCCc-ceeEEEEeee-CCeEEEeCCCCcEEEEecCC
Q 014962          263 KLEQIYCDPSQ-RLVADCVLMD-VDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       263 ~L~~varD~~~-~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +.......... .......+.. ...++.+..+|.+.++....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~  127 (355)
T d1nexb2          85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  127 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred             ccccccccccccccccccccccccceeeeecCCCcEEEEEccC
Confidence            44433333333 3333333322 23577778889999887654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.57  E-value=1.8  Score=36.52  Aligned_cols=126  Identities=5%  Similarity=-0.043  Sum_probs=66.3

Q ss_pred             eEEEEEEEecCCceEEEeee--CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccce-EEEEEEEeCCEEEEeecCCc
Q 014962          176 QLRLAYSTTWPGMVLAICPY--LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLLTAHFTRIAVGDCRDG  251 (415)
Q Consensus       176 ~L~l~~~~~~~g~V~al~~~--~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~-~i~sI~~~~n~IlVGD~~~S  251 (415)
                      ..++.......++|++++-.  .+.+|+.| ....+.+|++....  ............ ........++.++.+.....
T Consensus        46 ~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (342)
T d1yfqa_          46 NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--SFQALTNNEANLGICRICKYGDDKLIAASWDGL  123 (342)
T ss_dssp             EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS--SEEECBSCCCCSCEEEEEEETTTEEEEEETTSE
T ss_pred             ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc--ccccccccccccccccccccccccccccccccc
Confidence            44555555678999999844  34423333 34568999987632  222212222122 33333445667777777777


Q ss_pred             EEEEEEEccC--CeEEEEecCCC-cceeEEEEe-eeCCeEEEeCCCCcEEEEecCC
Q 014962          252 ILFYSYHEDA--RKLEQIYCDPS-QRLVADCVL-MDVDTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       252 v~ll~y~~~~--~~L~~varD~~-~~~vta~~~-Ld~d~~l~aD~~gNl~vl~~~~  303 (415)
                      +.++..+...  ..+........ ........+ .+...++.+..+|.+.++....
T Consensus       124 ~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  179 (342)
T d1yfqa_         124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             EEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred             cceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEeccc
Confidence            7665433222  22222222211 112222222 2445778888899999988654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.42  E-value=1.8  Score=36.11  Aligned_cols=60  Identities=12%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962           17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS   87 (415)
Q Consensus        17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~   87 (415)
                      ....|+++|+.+.++.+..+       ..|++.|..+++.+.+++... ..+.+   +.+. +..+++.+..
T Consensus        19 ~I~~l~~sp~~~~l~s~s~D-------g~i~iWd~~~~~~~~~~~~h~-~~V~~---~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASED-------ATIKVWDYETGDFERTLKGHT-DSVQD---ISFDHSGKLLASCSA   79 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESS-------SCEEEEETTTCCCCEEECCCS-SCEEE---EEECTTSSEEEEEET
T ss_pred             CeEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCCEEEEEeCCC-CcEEE---Eeeeccccccccccc
Confidence            56789999998877665433       359999999998888776432 33443   3333 4466666654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=3.7  Score=34.79  Aligned_cols=113  Identities=12%  Similarity=0.047  Sum_probs=68.9

Q ss_pred             EecCCceEEEeeeCCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962          183 TTWPGMVLAICPYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA  261 (415)
Q Consensus       183 ~~~~g~V~al~~~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~  261 (415)
                      ......|.+...- |.+++.+.. ..+.+|+...  .+.+..................++++++|..-..+.++.  ...
T Consensus       158 ~~~~~~v~~~~~~-~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d--~~~  232 (355)
T d1nexb2         158 RGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD--LEN  232 (355)
T ss_dssp             ECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE--TTT
T ss_pred             eeccccccccccc-cceeeeecccceeeeeeccc--ccceeeeeccccccccccccccceeeecccccceEEeee--ccc
Confidence            3345556665554 443555544 4588888875  233433333333444555556788999998888886654  444


Q ss_pred             CeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          262 RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       262 ~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      +.+...-+ .....++++.+ +++.++.+..+|.|.++..+
T Consensus       233 ~~~~~~~~-~h~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         233 GELMYTLQ-GHTALVGLLRL-SDKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             CCEEEEEC-CCSSCCCEEEE-CSSEEEEECTTSEEEEEETT
T ss_pred             cccccccc-ccccccccccc-ccceeeeeeccccccccccc
Confidence            44433333 23445666655 67789999999999998854

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=3.4  Score=33.92  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=67.0

Q ss_pred             cCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962          185 WPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK  263 (415)
Q Consensus       185 ~~g~V~al~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~  263 (415)
                      -.++|++|+ +++++|+.|- ...+.+|++....  ....  ...............+.++.+.....+.++........
T Consensus        54 H~~~V~~v~-~~~~~l~s~s~D~~i~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (293)
T d1p22a2          54 HTGSVLCLQ-YDERVIITGSSDSTVRVWDVNTGE--MLNT--LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI  128 (293)
T ss_dssp             CSSCEEEEE-CCSSEEEEEETTSCEEEEESSSCC--EEEE--ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred             CCCCEeeee-cccceeeccccccccccccccccc--cccc--ccccccccccccccccceeecccccceeEeeccccccc
Confidence            468899987 5788555443 3458899987632  1222  11222234455566778888888888877766554444


Q ss_pred             EEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962          264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS  302 (415)
Q Consensus       264 L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~  302 (415)
                      ............+.+..+ ....++.+..++.+.++...
T Consensus       129 ~~~~~~~~~~~~v~~~~~-~~~~~~~~s~d~~i~~~d~~  166 (293)
T d1p22a2         129 TLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTS  166 (293)
T ss_dssp             EEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETT
T ss_pred             ccccccccccccccccee-cccccccccCCCceeeecCC
Confidence            444444444555555444 44555556667777777643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=5.5  Score=33.83  Aligned_cols=94  Identities=15%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             EEEEEEeCCEEEEeecC-CcEEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCC-CcEEEEecCCCcCCCC
Q 014962          233 IMLLTAHFTRIAVGDCR-DGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRK-GSIAVLSCSDRLEDNA  309 (415)
Q Consensus       233 i~sI~~~~n~IlVGD~~-~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~-gNl~vl~~~~~~~~~~  309 (415)
                      ...+...++++++.... ..+.++..+.....+..........+...+.|= |...++++..+ +.|.+++++.     +
T Consensus       234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~-----~  308 (333)
T d1ri6a_         234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG-----E  308 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET-----T
T ss_pred             eEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC-----C
Confidence            34455567777776654 467777777666555555444333334444443 34466777765 5588888765     2


Q ss_pred             CCCCccceeeeeecCccccEEEee
Q 014962          310 SPECNLTPNCAYHMGEIAVSIRKG  333 (415)
Q Consensus       310 ~~~~kL~~~~~fhlGd~Vt~~~~g  333 (415)
                      +  .+|...+.+.+|+.+..+.-.
T Consensus       309 t--G~l~~~~~~~~g~~p~~v~~~  330 (333)
T d1ri6a_         309 Q--GLLHEKGRYAVGQGPMWVVVN  330 (333)
T ss_dssp             T--TEEEEEEEEECSSSCCEEEEE
T ss_pred             C--CcEEEEEeccCCCCCcEEEEE
Confidence            2  479999999999988887543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.80  E-value=8.1  Score=34.85  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc-----EEEEEeCCCC----------CeEEEEEEEEEC-
Q 014962           14 LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS-----VLSSFKLELG----------ETGKSMELVRVG-   77 (415)
Q Consensus        14 L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~-----~i~s~~l~~~----------E~~~si~~~~l~-   77 (415)
                      -+..||.|++||+.+.+.|+.      +..+.|.+++.++..     .+.++.+.+.          ........+.+. 
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~------e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp  264 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALM------EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEE------TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             CCCceEEEEECCCCceEEEec------cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC
Confidence            356999999999999777764      333456666644332     2233333221          122223334443 


Q ss_pred             CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962           78 HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        78 ~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                      +..++.|+..          +.+....+.|..|++.
T Consensus       265 dG~~lyvsnr----------~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         265 SGKYMFASSR----------ANKFELQGYIAGFKLR  290 (365)
T ss_dssp             TSSEEEEEEE----------ESSTTSCCEEEEEEEC
T ss_pred             CCCEEEEEcc----------cCCCccceEEEEEEec
Confidence            5567776644          2345677888888888

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.50  E-value=2.6  Score=36.41  Aligned_cols=106  Identities=12%  Similarity=0.053  Sum_probs=70.1

Q ss_pred             EeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCC
Q 014962          192 ICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDP  271 (415)
Q Consensus       192 l~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~  271 (415)
                      ..+-.|++++.+...+|++|+...   ..++... +......+.....+++|+++-...+-.+..|+.+.+.+..+-.  
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~---~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~--   83 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE--   83 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTS---SBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC--
T ss_pred             ccCCCCCEEEEEECCeEEEEECCC---CcEEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC--
Confidence            455568767777888999999875   2344432 3334344444456778877666666667788888877766543  


Q ss_pred             CcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962          272 SQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD  303 (415)
Q Consensus       272 ~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~  303 (415)
                      ....+.++.+-.+ ..++.+..++.+++.....
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCceEEeeeecccccccceeccccccccccccc
Confidence            4555667777544 4777778888888887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.21  E-value=6.6  Score=33.10  Aligned_cols=50  Identities=14%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCC
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE   66 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E   66 (415)
                      ..+.++....|+.++++|+.+.++++.         ..+.++|..+++.+..+......
T Consensus       127 ~~~~~~~~~~~~~~~~s~dg~~l~~~~---------~~~~~~d~~~~~~~~~~~~~~~~  176 (337)
T d1pbyb_         127 RRKAFEAPRQITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             EEEEEECCSSCCCEEECTTSSCEEEES---------SSEEEEETTTTEEEEEECSTTTT
T ss_pred             EEEeccccCCceEEEEcCCCCEEEEEc---------CCcceeeeecCcEEEEeecCCcc
Confidence            456678888899999999988877652         23567899888888777665443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.29  E-value=10  Score=34.32  Aligned_cols=75  Identities=20%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             EeCCCccCEEEEecCCC-EEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecC
Q 014962           12 FHLGGTPKKVLYHSESR-LLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLS   89 (415)
Q Consensus        12 i~L~~tp~~I~y~~~~~-~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~   89 (415)
                      +|+..-|.++.+..+.+ .++|..++      ...|+++|..|++++.++..  ++.+.   .+.|. +..+++++..  
T Consensus        15 ~~~~~~p~~~~~~~d~~~~~~V~~~~------dg~v~vwD~~t~~~~~~l~~--g~~~~---~vafSPDGk~l~~~~~--   81 (426)
T d1hzua2          15 VKPEDRPKKQLNDLDLPNLFSVTLRD------AGQIALVDGDSKKIVKVIDT--GYAVH---ISRMSASGRYLLVIGR--   81 (426)
T ss_dssp             SCGGGSCSSCCSCCCGGGEEEEEETT------TTEEEEEETTTCSEEEEEEC--CSSEE---EEEECTTSCEEEEEET--
T ss_pred             CCcccCCCcccccCCCCeEEEEEEcC------CCEEEEEECCCCcEEEEEeC--CCCee---EEEECCCCCEEEEEeC--
Confidence            67888899998888744 55555432      35799999999999998875  45554   44554 5567776522  


Q ss_pred             CCCCCCCCCCccccccEEEEEEEE
Q 014962           90 SGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        90 ~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                                    -|.+.+|++.
T Consensus        82 --------------d~~v~vwd~~   91 (426)
T d1hzua2          82 --------------DARIDMIDLW   91 (426)
T ss_dssp             --------------TSEEEEEETT
T ss_pred             --------------CCCEEEEEcc
Confidence                          2567777776

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.69  E-value=12  Score=34.42  Aligned_cols=75  Identities=13%  Similarity=0.172  Sum_probs=49.5

Q ss_pred             EeCCCccCEEEEecCC-CEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecC
Q 014962           12 FHLGGTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLS   89 (415)
Q Consensus        12 i~L~~tp~~I~y~~~~-~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~   89 (415)
                      +|.+.-|.+.++..+. ++++|..++.      ..|.|+|..|++++..++.  ++.+.   .+.|. +..+++++..  
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~v~~~d~------g~v~v~D~~t~~v~~~~~~--g~~~~---~v~fSpDG~~l~~~s~--   81 (432)
T d1qksa2          15 VAPEDRPTQQMNDWDLENLFSVTLRDA------GQIALIDGSTYEIKTVLDT--GYAVH---ISRLSASGRYLFVIGR--   81 (432)
T ss_dssp             SCGGGSCSSCCSCCCGGGEEEEEETTT------TEEEEEETTTCCEEEEEEC--SSCEE---EEEECTTSCEEEEEET--
T ss_pred             cccccCCCceeecCCCCcEEEEEEcCC------CEEEEEECCCCcEEEEEeC--CCCee---EEEECCCCCEEEEEcC--
Confidence            4555566777776663 4555665433      4699999999999998875  44444   44564 5578877522  


Q ss_pred             CCCCCCCCCCccccccEEEEEEEE
Q 014962           90 SGPAIMPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        90 ~~~~~~~~~e~~~~~Gri~vf~i~  113 (415)
                                    .|.+.++++.
T Consensus        82 --------------dg~v~~~d~~   91 (432)
T d1qksa2          82 --------------DGKVNMIDLW   91 (432)
T ss_dssp             --------------TSEEEEEETT
T ss_pred             --------------CCCEEEEEee
Confidence                          3567777765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=85.05  E-value=0.75  Score=39.80  Aligned_cols=54  Identities=19%  Similarity=0.189  Sum_probs=45.5

Q ss_pred             eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeE
Q 014962            8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETG   68 (415)
Q Consensus         8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~   68 (415)
                      .++.++++..|+.++++|+++.++++..+       +.|+++|..|++.+.++.++.++.-
T Consensus       284 ~~~~~~~~~~~~~va~s~DG~~l~v~~~d-------~~v~v~D~~t~~~i~~i~~p~g~~~  337 (346)
T d1jmxb_         284 LIKAANLDHTYYCVAFDKKGDKLYLGGTF-------NDLAVFNPDTLEKVKNIKLPGGDMS  337 (346)
T ss_dssp             EEEEEECSSCCCEEEECSSSSCEEEESBS-------SEEEEEETTTTEEEEEEECSSSCCB
T ss_pred             EEEEEcCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECccCCEEEEEECCCCCcc
Confidence            46778999999999999999988876422       4699999999999999999887743

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.70  E-value=13  Score=31.67  Aligned_cols=62  Identities=11%  Similarity=0.078  Sum_probs=35.2

Q ss_pred             EEEEEEe-CCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCc
Q 014962          233 IMLLTAH-FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGS  295 (415)
Q Consensus       233 i~sI~~~-~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gN  295 (415)
                      +..|.+. .+.|++.|...+. +..|+.+...+..++.+-...+...+.+-.++.++++|..+|
T Consensus       159 ~~~i~~d~~g~i~v~d~~~~~-V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~  221 (279)
T d1q7fa_         159 PNGVVVNDKQEIFISDNRAHC-VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN  221 (279)
T ss_dssp             EEEEEECSSSEEEEEEGGGTE-EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             cceeeeccceeEEeeeccccc-eeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCC
Confidence            3444433 3468888887654 567888887787777554433344433322234555555443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=80.59  E-value=14  Score=30.45  Aligned_cols=52  Identities=19%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             eeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCC
Q 014962            7 LNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL   64 (415)
Q Consensus         7 ~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~   64 (415)
                      -.+++++.+..|+.++++++.+.+++....      ...+.+.+..+++.+..+....
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  116 (301)
T d1l0qa2          65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTGK  116 (301)
T ss_dssp             EEEEEEECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSS
T ss_pred             ceeeeeeccccccccccccccccccccccc------cceeeecccccceeeeeccccc
Confidence            356788999999999999998877776422      2357888988888777766544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.58  E-value=9.6  Score=33.89  Aligned_cols=75  Identities=12%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCC--CeEEEEEEEEEC-CeeEEEEeeecCCCCCC
Q 014962           18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG--ETGKSMELVRVG-HEQVLVVGTSLSSGPAI   94 (415)
Q Consensus        18 p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~--E~~~si~~~~l~-~~~~lvVGT~~~~~~~~   94 (415)
                      +..++++|+. .++.+. .      -..|++.|..+++.+..++...-  .+-..+..+.|. +..+|+.|..-      
T Consensus       187 ~~~v~~s~dg-~lasgs-~------Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D------  252 (393)
T d1sq9a_         187 ATSVDISERG-LIATGF-N------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS------  252 (393)
T ss_dssp             CCEEEECTTS-EEEEEC-T------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE------
T ss_pred             EEEEEECCCC-EEEEEe-C------CCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC------
Confidence            4568888875 443332 1      13599999999998887775432  112223444454 55788888652      


Q ss_pred             CCCCCccccccEEEEEEEE
Q 014962           95 MPSGEAESTKGRLIVLCIE  113 (415)
Q Consensus        95 ~~~~e~~~~~Gri~vf~i~  113 (415)
                             .+-|.|.+|++.
T Consensus       253 -------~t~~~i~lwd~~  264 (393)
T d1sq9a_         253 -------NSFGCITLYETE  264 (393)
T ss_dssp             -------TTEEEEEEEETT
T ss_pred             -------CCcceeeecccc
Confidence                   224667777765