Citrus Sinensis ID: 015230
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 411 | 2.2.26 [Sep-21-2011] | |||||||
| P31593 | 478 | Glutamate-1-semialdehyde | N/A | no | 1.0 | 0.859 | 0.883 | 0.0 | |
| Q42522 | 472 | Glutamate-1-semialdehyde | yes | no | 1.0 | 0.870 | 0.868 | 0.0 | |
| P45621 | 466 | Glutamate-1-semialdehyde | yes | no | 1.0 | 0.881 | 0.866 | 0.0 | |
| Q85WB7 | 473 | Glutamate-1-semialdehyde | N/A | no | 1.0 | 0.868 | 0.858 | 0.0 | |
| Q40147 | 481 | Glutamate-1-semialdehyde | N/A | no | 1.0 | 0.854 | 0.871 | 0.0 | |
| P42799 | 474 | Glutamate-1-semialdehyde | no | no | 1.0 | 0.867 | 0.851 | 0.0 | |
| Q6YZE2 | 478 | Glutamate-1-semialdehyde | yes | no | 1.0 | 0.859 | 0.841 | 0.0 | |
| P18492 | 469 | Glutamate-1-semialdehyde | N/A | no | 1.0 | 0.876 | 0.836 | 0.0 | |
| B1X023 | 433 | Glutamate-1-semialdehyde | yes | no | 1.0 | 0.949 | 0.742 | 0.0 | |
| B2J7M9 | 432 | Glutamate-1-semialdehyde | yes | no | 1.0 | 0.951 | 0.744 | 0.0 |
| >sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/411 (88%), Positives = 385/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 68 MPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAA 127
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR +
Sbjct: 128 LAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRPK 187
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG PK AT +TLTAP+ND+SA+E+LFE +
Sbjct: 188 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGGPKAATSDTLTAPYNDISAVESLFEEH 247
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGE+AAIILEPVVGN+GFI P DFL AIR+ITKEN ALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 248 KGEVAAIILEPVVGNAGFIQPNLDFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYF 307
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 308 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 367
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+ PGTYEYL+KITGELTQGI+DAGKK GHA+CGGYI GMFGF F EGPV NF DAKKS+
Sbjct: 368 LQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVNNFSDAKKSD 427
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKVL+QI
Sbjct: 428 TEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQKTVAAAEKVLKQI 478
|
Nicotiana tabacum (taxid: 4097) EC: 5EC: .EC: 4EC: .EC: 3EC: .EC: 8 |
| >sp|Q42522|GSA2_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/411 (86%), Positives = 386/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 62 MPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAA 121
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG+++
Sbjct: 122 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKQK 181
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LFE N
Sbjct: 182 FIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLFEAN 241
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 242 KGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQEYF 301
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 302 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 361
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAKKS+
Sbjct: 362 LSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAKKSD 421
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 422 TEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P45621|GSA_SOYBN Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/411 (86%), Positives = 383/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPIV DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADDQVLAA
Sbjct: 56 MPGGVNSPVRAFKSVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 115
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
LGETMKKGTSFGAPCLLEN LAE+VI AVPSIEMVRFVNSGTEACMG LRLARA+TGRE+
Sbjct: 116 LGETMKKGTSFGAPCLLENTLAELVIDAVPSIEMVRFVNSGTEACMGALRLARAYTGREK 175
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT+ETLTAP+ND A+E LFE N
Sbjct: 176 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDTEAIEKLFEAN 235
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAA+ LEPVVGN+GFI PKPDF + +R+ITKEN LL+FDEVMTGFRL+YGGAQEYF
Sbjct: 236 KGEIAAVFLEPVVGNAGFIVPKPDFHSFLRKITKENNTLLVFDEVMTGFRLSYGGAQEYF 295
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD+TTLGKIIGGGLPVGAYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI TL+R
Sbjct: 296 GITPDITTLGKIIGGGLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAMTAGIETLQR 355
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
+KEPGTYEYL+KITGEL +GII+AGK+AGHAICGG+I GMFGFFFTEGPVYNF DAKKS+
Sbjct: 356 IKEPGTYEYLDKITGELVEGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVYNFADAKKSD 415
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KFARF+ GML EGVY APSQFEAGFTSLAH+SDDI+ TI AAEKV R+I
Sbjct: 416 TAKFARFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 466
|
Glycine max (taxid: 3847) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q85WB7|GSA_BRANA Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/411 (85%), Positives = 386/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 63 MPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAA 122
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT +E+
Sbjct: 123 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTNKEK 182
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+ LFE +
Sbjct: 183 FIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAKLFEAH 242
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NGALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 243 KGEISAVILEPVVGNSGFITPTPEFINGLRQLTKDNGALLIFDEVMTGFRLAYGGAQEYF 302
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 303 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 362
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LK+PGTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF DAKKS+
Sbjct: 363 LKQPGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADAKKSD 422
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF +F+RGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ TI+AAE+VL +I
Sbjct: 423 TEKFGKFFRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQFTISAAERVLGRI 473
|
Brassica napus (taxid: 3708) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q40147|GSA_SOLLC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/411 (87%), Positives = 384/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 71 MPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAA 130
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT R +
Sbjct: 131 LAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPK 190
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+SA+E+LFE +
Sbjct: 191 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEH 250
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAA+ILEPVVGN+GFI PK +FL AIR+ITKEN ALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 251 KGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYF 310
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 311 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 370
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+ GTYE+L+KIT ELTQGI+DAGKK GHA+CGG I GMFGFFF +GP+YNF DAKKS+
Sbjct: 371 LQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSD 430
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ T+ AAEKVL+QI
Sbjct: 431 TEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI 481
|
Solanum lycopersicum (taxid: 4081) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P42799|GSA1_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/411 (85%), Positives = 382/411 (92%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 64 MPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAA 123
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT +E+
Sbjct: 124 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTNKEK 183
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF +
Sbjct: 184 FIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLFAAH 243
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQEYF
Sbjct: 244 KGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQEYF 303
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 304 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+KKS+
Sbjct: 364 LKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSKKSD 423
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+VL +I
Sbjct: 424 TEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSRI 474
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q6YZE2|GSA_ORYSJ Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/411 (84%), Positives = 381/411 (92%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPIVFDSVKGS MWD+DGNEYIDYVGSWGPAIIGHADD V AA
Sbjct: 68 MPGGVNSPVRAFKSVGGQPIVFDSVKGSRMWDVDGNEYIDYVGSWGPAIIGHADDTVNAA 127
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ET+KKGTSFGAPC+LENVLAEMVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+
Sbjct: 128 LIETLKKGTSFGAPCVLENVLAEMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREK 187
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPKGAT ETLTAP+NDV A++ LFE N
Sbjct: 188 ILKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKGATSETLTAPYNDVEAVKKLFEEN 247
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KG+IAA+ LEPVVGN+GFI P+P FLNA+R +TK++GALL+FDEVMTGFRLAYGGAQEYF
Sbjct: 248 KGQIAAVFLEPVVGNAGFIPPQPGFLNALRDLTKQDGALLVFDEVMTGFRLAYGGAQEYF 307
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD++TLGKIIGGGLPVGAYGGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 308 GITPDVSTLGKIIGGGLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 367
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L EPGTY+YL+KITG+L +G++DAG K GH +CGG+I GMFGFFFT GPV+NF DAKKS+
Sbjct: 368 LMEPGTYDYLDKITGDLVRGVLDAGAKTGHEMCGGHIRGMFGFFFTAGPVHNFGDAKKSD 427
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RFYRGMLEEGVY APSQFEAGFTSLAH+S DI+ T+ AA KVLR+I
Sbjct: 428 TAKFGRFYRGMLEEGVYLAPSQFEAGFTSLAHTSQDIEKTVEAAAKVLRRI 478
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P18492|GSA_HORVU Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/411 (83%), Positives = 379/411 (92%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWD+DGNEYIDYVGSWGPAIIGHADD+V AA
Sbjct: 59 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDVDGNEYIDYVGSWGPAIIGHADDKVNAA 118
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ET+KKGTSFGAPC LENVLA+MVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+
Sbjct: 119 LIETLKKGTSFGAPCALENVLAQMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREK 178
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPKGAT TLTAP+ND A++ LFE+N
Sbjct: 179 ILKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKGATVGTLTAPYNDADAVKKLFEDN 238
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAA+ LEPVVGN+GFI P+P FLNA+R +TK++GALL+FDEVMTGFRLAYGGAQEYF
Sbjct: 239 KGEIAAVFLEPVVGNAGFIPPQPAFLNALREVTKQDGALLVFDEVMTGFRLAYGGAQEYF 298
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD+TTLGKIIGGGLPVGAYGGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 299 GITPDVTTLGKIIGGGLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 358
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L EPGTYEYL+K+TGEL +GI+D G K GH +CGG+I GMFGFFF GPV+NF+DAKKS+
Sbjct: 359 LMEPGTYEYLDKVTGELVRGILDVGAKTGHEMCGGHIRGMFGFFFAGGPVHNFDDAKKSD 418
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RF+RGML EGVY APSQFEAGFTSLAH++ DI+ T+ AAEKVLR I
Sbjct: 419 TAKFGRFHRGMLGEGVYLAPSQFEAGFTSLAHTTQDIEKTVEAAEKVLRWI 469
|
Hordeum vulgare (taxid: 4513) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|B1X023|GSA_CYAA5 Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain ATCC 51142) GN=hemL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/411 (74%), Positives = 355/411 (86%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPAI GHA +V+AA
Sbjct: 23 MPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVIAA 82
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L + + +GTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACM VLRL RAFTGR++
Sbjct: 83 LHDALDRGTSFGAPCLLENVLAEMVIDAVPSIEMVRFVNSGTEACMSVLRLMRAFTGRDK 142
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKF+GCYHGHAD FLV+AGSGVATLGLPDSPGVPK T TLTAP+ND+ A++ LF N
Sbjct: 143 IIKFQGCYHGHADMFLVQAGSGVATLGLPDSPGVPKTTTANTLTAPYNDLEAVKALFAEN 202
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIA +ILEPVVGNSGF+ P FL +R +T E GALL+FDEVMTGFRL+YGGAQE F
Sbjct: 203 PDEIAGVILEPVVGNSGFVVPDGGFLQGLRELTNEYGALLVFDEVMTGFRLSYGGAQEKF 262
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLTTLGK+IGGGLPVGAYGGR+DIM MVAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 263 GVTPDLTTLGKVIGGGLPVGAYGGRKDIMSMVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 322
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTY L +IT +L++G++ K+AGH +CGGYI MFG FFTEGPV N++DAKKS+
Sbjct: 323 LQKPGTYNQLEQITQQLSEGLLKIAKEAGHQVCGGYIGAMFGLFFTEGPVRNYDDAKKSD 382
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF RF+RGMLE+GVY APSQFEAGFTSLAH+S+DI+ T+ AA+ VL +
Sbjct: 383 LAKFGRFHRGMLEKGVYLAPSQFEAGFTSLAHTSEDIEKTLAAAKDVLSNL 433
|
Cyanothece sp. (strain ATCC 51142) (taxid: 43989) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|B2J7M9|GSA_NOSP7 Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/411 (74%), Positives = 351/411 (85%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPAI GHA +V+AA
Sbjct: 22 MPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVIAA 81
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L E ++KGTSFGAP LENVLAEMVI AVPSIEMVRFVNSGTEACMGVLRL RAFT R++
Sbjct: 82 LHEALEKGTSFGAPSTLENVLAEMVIDAVPSIEMVRFVNSGTEACMGVLRLMRAFTNRDK 141
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK AT TLTAP+ND+ +++ LFE N
Sbjct: 142 IIKFEGCYHGHADTFLVKAGSGVATLGLPDSPGVPKAATSTTLTAPYNDLESVKALFEEN 201
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+ EIA +ILEPVVGN+GFIAP FL +R +T E GALL+FDEVMTGFR+AYGGAQE F
Sbjct: 202 RDEIAGVILEPVVGNAGFIAPDAGFLEGLRELTHEYGALLVFDEVMTGFRIAYGGAQEKF 261
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLTTLGK+IGGGLPVGAYGGRRDIM MVAPAGP+YQAGTLSGNPLAMTAGI TL+
Sbjct: 262 GVTPDLTTLGKVIGGGLPVGAYGGRRDIMSMVAPAGPVYQAGTLSGNPLAMTAGIKTLEL 321
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTY+YL +IT +L G++ K+ GH CGG IS MFG FFT GPV+N+EDAKKS+
Sbjct: 322 LQKPGTYDYLERITKKLADGLLQIAKETGHTACGGQISAMFGLFFTSGPVHNYEDAKKSD 381
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RF+RGMLE GVY APSQFEAGFTS AH+ +DI T+ A V+ +
Sbjct: 382 TAKFGRFHRGMLERGVYLAPSQFEAGFTSFAHTEEDIDQTLAIARDVMSSL 432
|
Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 411 | ||||||
| 449438260 | 471 | PREDICTED: glutamate-1-semialdehyde 2,1- | 1.0 | 0.872 | 0.905 | 0.0 | |
| 255571784 | 473 | glutamate-1-semialdehyde 2,1-aminomutase | 1.0 | 0.868 | 0.909 | 0.0 | |
| 224134068 | 479 | predicted protein [Populus trichocarpa] | 1.0 | 0.858 | 0.897 | 0.0 | |
| 225456404 | 473 | PREDICTED: glutamate-1-semialdehyde 2,1- | 1.0 | 0.868 | 0.892 | 0.0 | |
| 307136451 | 471 | glutamate-1-semialdehyde 21-aminomutase | 1.0 | 0.872 | 0.892 | 0.0 | |
| 19875 | 478 | glutamate-1-semialdehyde 2,1-aminomutase | 1.0 | 0.859 | 0.883 | 0.0 | |
| 357467549 | 468 | Glutamate-1-semialdehyde 2,1-aminomutase | 1.0 | 0.878 | 0.863 | 0.0 | |
| 399785 | 478 | RecName: Full=Glutamate-1-semialdehyde 2 | 1.0 | 0.859 | 0.883 | 0.0 | |
| 345451030 | 471 | glutamate 1-semialdehyde aminotransferas | 1.0 | 0.872 | 0.861 | 0.0 | |
| 297816078 | 476 | glutamate-1-semialdehyde 2,1-aminomutase | 1.0 | 0.863 | 0.871 | 0.0 |
| >gi|449438260|ref|XP_004136907.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] gi|449527822|ref|XP_004170908.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/411 (90%), Positives = 398/411 (96%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKGSHMWDIDGNEY+DYVGSWGPAIIGHADD+VLAA
Sbjct: 61 MPGGVNSPVRAFKSVGGQPIIIDSVKGSHMWDIDGNEYVDYVGSWGPAIIGHADDEVLAA 120
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG+E+
Sbjct: 121 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKEK 180
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
+IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAPFND+SA+E++F N
Sbjct: 181 LIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPFNDISAVESIFNAN 240
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAAIILEPVVGNSGFIAPKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGGAQEYF
Sbjct: 241 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGGAQEYF 300
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 301 GITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 360
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LKEPGTYEYL+KIT EL +G++ AGKKAGHAICGGYI+GMFGFFFT+GPVYNFEDAKKS+
Sbjct: 361 LKEPGTYEYLDKITSELVEGLVAAGKKAGHAICGGYINGMFGFFFTDGPVYNFEDAKKSD 420
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RFYRGMLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV +QI
Sbjct: 421 TAKFGRFYRGMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKVFKQI 471
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571784|ref|XP_002526835.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] gi|223533839|gb|EEF35570.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/411 (90%), Positives = 396/411 (96%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPIV DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA
Sbjct: 63 MPGGVNSPVRAFKSVGGQPIVMDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 122
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVI AVP IEMVRFVNSGTEACMGVLRLARAFTG+E+
Sbjct: 123 LAETMKKGTSFGAPCLLENVLAEMVIKAVPCIEMVRFVNSGTEACMGVLRLARAFTGQEK 182
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
+IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT+ETLTAPFND++A+E LFE N
Sbjct: 183 LIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPFNDIAAVEKLFEAN 242
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAAIILEPVVGNSGFI PKPDFLNAIRRITKEN ALLIFDEVMTGFRL+YGGAQEYF
Sbjct: 243 KGEIAAIILEPVVGNSGFIPPKPDFLNAIRRITKENNALLIFDEVMTGFRLSYGGAQEYF 302
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDL+TLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 303 GITPDLSTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 362
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+EPG+YEYL+KITGEL QGI+DAGKKAGHA+CGG+ISGMFGFFFTEGPVYNF DAKKS+
Sbjct: 363 LQEPGSYEYLDKITGELIQGILDAGKKAGHAMCGGHISGMFGFFFTEGPVYNFSDAKKSD 422
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KFARFY+GMLEEGVYFAPSQFEAGFTSLAH+++DIQ TI AAEKV RQI
Sbjct: 423 TAKFARFYQGMLEEGVYFAPSQFEAGFTSLAHTTEDIQRTIKAAEKVFRQI 473
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134068|ref|XP_002321728.1| predicted protein [Populus trichocarpa] gi|222868724|gb|EEF05855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/411 (89%), Positives = 393/411 (95%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPIVFDSVKGSHM DIDGN+YIDYVGSWGPAIIGHADD+VLAA
Sbjct: 69 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMRDIDGNDYIDYVGSWGPAIIGHADDEVLAA 128
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACMGVLRLARA+TGRE+
Sbjct: 129 LSETMKKGTSFGAPCLLENVLAEMVIKAVPSIEMVRFVNSGTEACMGVLRLARAYTGREK 188
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAP+ND++A+ENLFENN
Sbjct: 189 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPYNDIAAVENLFENN 248
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEI IILEPVVGN+GFI PKP+F+NAIRRIT+EN ALLIFDEVMTGFRL+YGGAQEYF
Sbjct: 249 KGEICGIILEPVVGNAGFIPPKPEFINAIRRITEENNALLIFDEVMTGFRLSYGGAQEYF 308
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 309 GITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 368
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PG+YEYL+KIT EL QGIIDAGKK GHAICGGYI GMFGFFFTEGPVYNF DAKKS+
Sbjct: 369 LQKPGSYEYLDKITSELVQGIIDAGKKTGHAICGGYIRGMFGFFFTEGPVYNFADAKKSD 428
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KFARFY+GML EGVYFAPSQFEAGFTSLAH+++DIQ TI AAE VLRQI
Sbjct: 429 TAKFARFYQGMLREGVYFAPSQFEAGFTSLAHTAEDIQKTIAAAENVLRQI 479
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456404|ref|XP_002284200.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Vitis vinifera] gi|147861754|emb|CAN83169.1| hypothetical protein VITISV_021914 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/411 (89%), Positives = 396/411 (96%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 63 MPGGVNSPVRAFKSVGGQPILFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDEVLAA 122
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLEN+LAEMVISAVPSIEMVRFVNSGTEACMG+LRLARAFTG+E+
Sbjct: 123 LAETMKKGTSFGAPCLLENILAEMVISAVPSIEMVRFVNSGTEACMGMLRLARAFTGKEK 182
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP+ AT+ETLT+PFND+S +E LFE N
Sbjct: 183 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPRAATFETLTSPFNDLSTVEKLFEAN 242
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAA+ILEPVVGNSGFIAPKPDFLNA++ ITKENGALL+FDEVMTGFR++YGGAQEYF
Sbjct: 243 KGEIAAVILEPVVGNSGFIAPKPDFLNALQEITKENGALLVFDEVMTGFRISYGGAQEYF 302
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD+TTLGKIIGGGLPVGAYGGRR+IME+VAPAGPMYQAGTLSGNPLAMTAGI TLKR
Sbjct: 303 GITPDITTLGKIIGGGLPVGAYGGRREIMELVAPAGPMYQAGTLSGNPLAMTAGIQTLKR 362
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LKEPG+YEYL+KITGEL QGI+DAGKKAGHAICGGYISGMFGFFFTEGPVYNF DAK S+
Sbjct: 363 LKEPGSYEYLDKITGELIQGILDAGKKAGHAICGGYISGMFGFFFTEGPVYNFGDAKNSD 422
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KFARF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAEKV R+I
Sbjct: 423 TAKFARFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQQTIAAAEKVFRKI 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136451|gb|ADN34256.1| glutamate-1-semialdehyde 21-aminomutase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/411 (89%), Positives = 394/411 (95%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKGSHMWDIDGNEY+DYVGSWGPAIIGHADD+VLAA
Sbjct: 61 MPGGVNSPVRAFKSVGGQPIIIDSVKGSHMWDIDGNEYVDYVGSWGPAIIGHADDEVLAA 120
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG+E+
Sbjct: 121 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKEK 180
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
+IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT ETLTAPFND+SA+E++F N
Sbjct: 181 LIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATSETLTAPFNDLSAVESIFNAN 240
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAAIILEPVVGNSGFI PKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGGAQEYF
Sbjct: 241 KGEIAAIILEPVVGNSGFIPPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGGAQEYF 300
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 301 GITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 360
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LKEPGTYEYL+KIT EL +G++ AGKKAGHAI GGYI+GMFGFFFT+GPV+NFEDAKKS+
Sbjct: 361 LKEPGTYEYLDKITSELVEGLVAAGKKAGHAISGGYINGMFGFFFTDGPVHNFEDAKKSD 420
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RFYR MLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV +QI
Sbjct: 421 TAKFGRFYRAMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKVFKQI 471
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19875|emb|CAA46787.1| glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/411 (88%), Positives = 388/411 (94%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGN+YIDYVGSWGPAIIGHADD+VLAA
Sbjct: 68 MPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNDYIDYVGSWGPAIIGHADDEVLAA 127
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR +
Sbjct: 128 LAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRPK 187
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+SA+E+LF+ +
Sbjct: 188 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATTDTLTAPYNDISAVESLFKEH 247
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGE+AAIILEPVVGN+GFI P PDFL AIR+ITKEN ALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 248 KGEVAAIILEPVVGNAGFIQPNPDFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYF 307
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 308 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 367
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+ PGTY+YL+KITGELTQGI+DAGKK GHA+CGGYI GMFGFFF EGPV NF DAKKS+
Sbjct: 368 LQGPGTYDYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFFFVEGPVNNFSDAKKSD 427
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKVL+QI
Sbjct: 428 TEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQRTVAAAEKVLKQI 478
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467549|ref|XP_003604059.1| Glutamate-1-semialdehyde 2,1-aminomutase [Medicago truncatula] gi|345451028|gb|AEN94094.1| glutamate 1-semialdehyde aminotransferase [Medicago truncatula] gi|355493107|gb|AES74310.1| Glutamate-1-semialdehyde 2,1-aminomutase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/411 (86%), Positives = 386/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKG+ MWDIDGN+YIDYVGSWGPAIIGHADDQVLAA
Sbjct: 58 MPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLAA 117
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMG LRLARA+TG+E+
Sbjct: 118 LAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEK 177
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT ETLTAPFND +A+E +FE N
Sbjct: 178 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEAN 237
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIA + LEPVVGNSGFI PKPDFL+++R+ITKEN ALL+FDEVMTGFRL+YGGAQEYF
Sbjct: 238 KGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQEYF 297
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD+TTLGKIIGGGLPVGAYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI TLKR
Sbjct: 298 GITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIETLKR 357
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
+KEPGTYEYL+KITGEL QGI++AGK+AGHAICGG+I+GMFGFFFTEGPVYNF DAKKS+
Sbjct: 358 IKEPGTYEYLDKITGELVQGIVEAGKRAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSD 417
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KFA+F+ GML EGVY APSQFEAGFTSLAH+SDDI+ TI AAEKV R+I
Sbjct: 418 TAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 468
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|399785|sp|P31593.1|GSA_TOBAC RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic; Short=GSA; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT; Flags: Precursor gi|19873|emb|CAA46786.1| glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/411 (88%), Positives = 385/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 68 MPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAA 127
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR +
Sbjct: 128 LAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRPK 187
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG PK AT +TLTAP+ND+SA+E+LFE +
Sbjct: 188 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGGPKAATSDTLTAPYNDISAVESLFEEH 247
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGE+AAIILEPVVGN+GFI P DFL AIR+ITKEN ALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 248 KGEVAAIILEPVVGNAGFIQPNLDFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYF 307
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 308 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 367
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+ PGTYEYL+KITGELTQGI+DAGKK GHA+CGGYI GMFGF F EGPV NF DAKKS+
Sbjct: 368 LQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVNNFSDAKKSD 427
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKVL+QI
Sbjct: 428 TEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQKTVAAAEKVLKQI 478
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345451030|gb|AEN94095.1| glutamate 1-semialdehyde aminotransferase [Medicago sativa] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/411 (86%), Positives = 386/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPI+ DSVKG+ MWDIDGN+YIDYVGSWGPAIIGHADDQVL+A
Sbjct: 61 MPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLSA 120
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMG LRLARA+TG+E+
Sbjct: 121 LAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEK 180
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT ETLTAPFND +A+E +FE N
Sbjct: 181 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEAN 240
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIA + LEPVVGNSGFI PKPDFL+++R+ITKEN ALL+FDEVMTGFRL+YGGAQ+YF
Sbjct: 241 KGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQQYF 300
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD+TTLGKIIGGGLPVGAYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI TLKR
Sbjct: 301 GITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIETLKR 360
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
+KEPGTYEYL+KITGEL QGI++AGKKAGHAICGG+I+GMFGFFFTEGPVYNF DAKKS+
Sbjct: 361 IKEPGTYEYLDKITGELVQGIVEAGKKAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSD 420
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KFA+F+ GML EGVY APSQFEAGFTSLAH+SDDI+ TI AAEKV R+I
Sbjct: 421 TAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 471
|
Source: Medicago sativa Species: Medicago sativa Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816078|ref|XP_002875922.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis lyrata subsp. lyrata] gi|297321760|gb|EFH52181.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/411 (87%), Positives = 386/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 66 MPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAA 125
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG+++
Sbjct: 126 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKQK 185
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LFE N
Sbjct: 186 FIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKSATSDTLTAPYNDIAAVEQLFEAN 245
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 246 KGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQEYF 305
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 306 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 365
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAKKS+
Sbjct: 366 LSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAKKSD 425
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL +I
Sbjct: 426 TEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRI 476
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 411 | ||||||
| TAIR|locus:2114520 | 472 | GSA2 "glutamate-1-semialdehyde | 1.0 | 0.870 | 0.839 | 1.1e-188 | |
| TAIR|locus:2160554 | 474 | GSA1 ""glutamate-1-semialdehyd | 1.0 | 0.867 | 0.822 | 8.2e-186 | |
| TIGR_CMR|CHY_1212 | 432 | CHY_1212 "glutamate-1-semialde | 0.995 | 0.946 | 0.569 | 1.5e-122 | |
| TIGR_CMR|GSU_0337 | 427 | GSU_0337 "glutamate-1-semialde | 0.982 | 0.946 | 0.559 | 4.2e-118 | |
| TIGR_CMR|BA_4693 | 429 | BA_4693 "glutamate-1-semialdeh | 0.992 | 0.951 | 0.556 | 2.3e-117 | |
| UNIPROTKB|P23893 | 426 | hemL "glutamate-1-semialdehyde | 1.0 | 0.964 | 0.516 | 3.1e-115 | |
| TIGR_CMR|SO_1300 | 430 | SO_1300 "glutamate-1-semialdeh | 1.0 | 0.955 | 0.519 | 6.6e-113 | |
| UNIPROTKB|Q9KU97 | 432 | hemL "Glutamate-1-semialdehyde | 0.987 | 0.939 | 0.523 | 4.8e-110 | |
| TIGR_CMR|VC_0626 | 432 | VC_0626 "glutamate-1-semialdeh | 0.987 | 0.939 | 0.523 | 4.8e-110 | |
| TIGR_CMR|CPS_4629 | 427 | CPS_4629 "glutamate-1-semialde | 1.0 | 0.962 | 0.481 | 9.2e-107 |
| TAIR|locus:2114520 GSA2 "glutamate-1-semialdehyde 2,1-aminomutase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1829 (648.9 bits), Expect = 1.1e-188, P = 1.1e-188
Identities = 345/411 (83%), Positives = 374/411 (90%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 62 MPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAA 121
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG+++
Sbjct: 122 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKQK 181
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LFE N
Sbjct: 182 FIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLFEAN 241
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQEYF
Sbjct: 242 KGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQEYF 301
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 302 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 361
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAKKS+
Sbjct: 362 LSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAKKSD 421
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 422 TEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
|
| TAIR|locus:2160554 GSA1 ""glutamate-1-semialdehyde-2,1-aminomutase"" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1802 (639.4 bits), Expect = 8.2e-186, P = 8.2e-186
Identities = 338/411 (82%), Positives = 370/411 (90%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 64 MPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAA 123
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT +E+
Sbjct: 124 LAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTNKEK 183
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF +
Sbjct: 184 FIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLFAAH 243
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQEYF
Sbjct: 244 KGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQEYF 303
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 304 GITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+KKS+
Sbjct: 364 LKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSKKSD 423
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+VL +I
Sbjct: 424 TEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSRI 474
|
|
| TIGR_CMR|CHY_1212 CHY_1212 "glutamate-1-semialdehyde-2,1-aminomutase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 233/409 (56%), Positives = 289/409 (70%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAFKSVG P+ + +GS ++DIDGN YIDYVGSWGP I+GH +V A
Sbjct: 19 IPGGVNSPVRAFKSVGLNPVFIERGEGSKIYDIDGNCYIDYVGSWGPLILGHRHPKVEEA 78
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L +KKGTSFGAP LLE +AE++++A P+++MVR VNSGTEA M +RLAR FTGR +
Sbjct: 79 LANCLKKGTSFGAPTLLETEMAEIIVNAFPAMDMVRMVNSGTEATMSAIRLARGFTGRNK 138
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KFEGCYHGHAD L+KAGSG TLG+P SPGVP T+TA FND++ LE +F
Sbjct: 139 IVKFEGCYHGHADSLLIKAGSGALTLGVPTSPGVPANIANNTITAQFNDLALLEEIFAQE 198
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IAA+ILEPV GN G + PKP FL +R +T++ GALLI DEVMTGFR+ +GGAQ +
Sbjct: 199 GNDIAAVILEPVAGNMGVVPPKPGFLEGVRELTRKYGALLIMDEVMTGFRVHWGGAQVLY 258
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
V PD PVGAYGGRR+IMEMVAPAGP+YQAGTLSGNPLAMTAGI TL
Sbjct: 259 NVEPDITTLGKIIGGGLPVGAYGGRREIMEMVAPAGPVYQAGTLSGNPLAMTAGIATLTV 318
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LKE G YE L + + L G+ +A + AG + + M FFT V +++ A S+
Sbjct: 319 LKEEGVYEQLEEKSSYLESGLKEAARAAGLKLWFNRVGSMLCTFFTSEEVVDYKTACTSD 378
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 409
T KFA F++ +LE G+Y APSQFEA F SLAHS DD+ TI A+ K +
Sbjct: 379 TQKFAVFFKTLLENGIYIAPSQFEAMFVSLAHSKDDLDKTIEASYKAFK 427
|
|
| TIGR_CMR|GSU_0337 GSU_0337 "glutamate-1-semialdehyde-2,1-aminomutase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 226/404 (55%), Positives = 278/404 (68%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAFKSVG P+ G + D D N YIDYVGSWGP I+GH QV+ A
Sbjct: 17 IPGGVNSPVRAFKSVGADPLFIKKAFGCTITDADNNSYIDYVGSWGPMILGHCHPQVVEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ ++ G+SFGAP LE LA MVI AVPSIEMVR V+SGTEA M +RLAR +TGR++
Sbjct: 77 VKRAVESGSSFGAPTELEITLARMVIDAVPSIEMVRMVSSGTEATMSAIRLARGYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKF GCYHGHAD LVKAGSG AT G+PDSPGVP TLTA FND+ ++ L + N
Sbjct: 137 IIKFSGCYHGHADALLVKAGSGAATFGVPDSPGVPVDVAKNTLTAQFNDLDSVSKLIDEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
K EIA II+EP+ GN G + P FL +R I G +LIFDEVMTGFR+AYGGAQE +
Sbjct: 197 KNEIACIIVEPIAGNMGTVPPGEGFLEGLRSICDSEGIVLIFDEVMTGFRVAYGGAQELY 256
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGA+GG++DIM++++P+G +YQAGTLSGNPLAMTAGI TLK
Sbjct: 257 GVTPDMTTLGKIIGGGLPVGAFGGKKDIMKLLSPSGGVYQAGTLSGNPLAMTAGIETLKL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+ G YE L + + L +GI +A K AG+ I + MF FFT V ++ A +
Sbjct: 317 LQADGFYEQLEQTSRRLAEGITEAAKSAGYPIYPTRVGSMFCTFFTSNEVKDWPTATTCD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 404
T FA F+R MLE+G+Y APSQFE F S+AH+ +I+ TI AA
Sbjct: 377 TKAFAAFFRMMLEKGIYLAPSQFETAFVSIAHTEVEIEKTIVAA 420
|
|
| TIGR_CMR|BA_4693 BA_4693 "glutamate-1-semialdehyde-2,1-aminomutase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
Identities = 230/413 (55%), Positives = 285/413 (69%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SWGP I GHA+D+V+ A
Sbjct: 18 MPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEA 77
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA M LRLAR +TGR +
Sbjct: 78 LKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNK 137
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +ND+ +++ FE
Sbjct: 138 ILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQF 197
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEVMTGFR+AY Q Y+
Sbjct: 198 GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYY 257
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGG+ +IM VAP+GP+YQAGTLSGNPLAM AG TL +
Sbjct: 258 GVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ 317
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYISGMFGFFFTEGPVYNFEDAKK 358
L P +Y + L G+ A +K G H I M G FFT+ PV N++ AK
Sbjct: 318 LT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI--NRAGSMIGIFFTDEPVINYDAAKS 374
Query: 359 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE + ++
Sbjct: 375 SNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKL 427
|
|
| UNIPROTKB|P23893 hemL "glutamate-1-semialdehyde aminotransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 213/412 (51%), Positives = 285/412 (69%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVGSWGP ++GH + A
Sbjct: 15 IPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNA 74
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E ++G SFGAP +E +A++V VP+++MVR VNSGTEA M +RLAR FTGR++
Sbjct: 75 VIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDK 134
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +ND++++ FE
Sbjct: 135 IIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQY 194
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIA II+EPV GN + P P+FL +R + E GALLI DEVMTGFR+A GAQ+Y+
Sbjct: 195 PQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYY 254
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GV PD PVGA+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG L
Sbjct: 255 GVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNE 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKS 359
+ +PG +E L+++T L +G+++A ++AG + ++ GMFG FFT+ V ++D
Sbjct: 315 VAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMAC 374
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ +F RF+ ML+EGVY APS FEAGF S+AHS +DI +TI AA +V ++
Sbjct: 375 DVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL 426
|
|
| TIGR_CMR|SO_1300 SO_1300 "glutamate-1-semialdehyde-2,1-aminomutase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 214/412 (51%), Positives = 278/412 (67%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG P+ + G++++D DG YIDYVGSWGP I+GH ++ A
Sbjct: 15 IPGGVNSPVRAFNGVGGSPLFIEKADGAYIYDADGKAYIDYVGSWGPMILGHNHPKIREA 74
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ + G SFGAP LE +AE VI+ VPSIE VR V+SGTEA M +RLAR FT R++
Sbjct: 75 VLAAVHNGLSFGAPTELEVQMAEKVIAMVPSIEQVRMVSSGTEATMSAIRLARGFTNRDK 134
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KFEGCYHGHAD LVKAGSG TLG P SPG+P+ TLTA +ND+ ++ +LFE
Sbjct: 135 ILKFEGCYHGHADCLLVKAGSGALTLGQPSSPGIPEDFAKHTLTAVYNDLDSVRSLFEQY 194
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EI+ II+EPV GN I P P FL +R + E GALLI DEVMTGFR++ GAQ ++
Sbjct: 195 PTEISCIIIEPVAGNMNCIPPIPGFLEGLRSLCDEFGALLIIDEVMTGFRVSKSGAQGHY 254
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGA+GGR+D+M+ +AP GP+YQAGTLSGNP+AM+AG+ ++
Sbjct: 255 GVTPDLTTLGKVIGGGMPVGAFGGRKDVMQFIAPTGPVYQAGTLSGNPIAMSAGLAQMEA 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKS 359
L E G YE L+ T + +G A K G + Y+ GMFGFFFTE + F+ K
Sbjct: 315 LCEEGLYEALSAKTKRIAEGFKAAADKHGIPMAINYVGGMFGFFFTEQEHITRFDQVTKC 374
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
F FY GML+EGVY APS +EAGF S+AH ++++ T+ AA++VL ++
Sbjct: 375 NIEHFRTFYHGMLDEGVYLAPSAYEAGFLSMAHGEEELRLTLEAADRVLARM 426
|
|
| UNIPROTKB|Q9KU97 hemL "Glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 213/407 (52%), Positives = 267/407 (65%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG PI D G+ ++D DG YIDYVGSWGP I+GH + A
Sbjct: 15 IPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWGPMILGHNHAVIREA 74
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M +RLAR +TGR++
Sbjct: 75 VIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATMSAIRLARGYTGRDK 134
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA FND+ ++ LF N
Sbjct: 135 IIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTARFNDLDSVRELFAAN 194
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+GEIA II+EPV GN I P F +R I + GALLIFDEVMTGFR+A GGAQ ++
Sbjct: 195 QGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVMTGFRVALGGAQAHY 254
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
+ PD PVGA+GGRR++M+ +AP GP+YQAGTLSGNP+AM AG L
Sbjct: 255 NIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSGNPIAMAAGYACLNL 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN-FEDAKKS 359
L+E G + L T +L G + G + + GMFGFFFTE +ED +
Sbjct: 315 LREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFTEQETVTCYEDVARC 374
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 406
+ +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA++
Sbjct: 375 DVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAADR 421
|
|
| TIGR_CMR|VC_0626 VC_0626 "glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 213/407 (52%), Positives = 267/407 (65%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG PI D G+ ++D DG YIDYVGSWGP I+GH + A
Sbjct: 15 IPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWGPMILGHNHAVIREA 74
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M +RLAR +TGR++
Sbjct: 75 VIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATMSAIRLARGYTGRDK 134
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA FND+ ++ LF N
Sbjct: 135 IIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTARFNDLDSVRELFAAN 194
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+GEIA II+EPV GN I P F +R I + GALLIFDEVMTGFR+A GGAQ ++
Sbjct: 195 QGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVMTGFRVALGGAQAHY 254
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
+ PD PVGA+GGRR++M+ +AP GP+YQAGTLSGNP+AM AG L
Sbjct: 255 NIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSGNPIAMAAGYACLNL 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN-FEDAKKS 359
L+E G + L T +L G + G + + GMFGFFFTE +ED +
Sbjct: 315 LREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFTEQETVTCYEDVARC 374
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 406
+ +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA++
Sbjct: 375 DVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAADR 421
|
|
| TIGR_CMR|CPS_4629 CPS_4629 "glutamate-1-semialdehyde-2,1-aminomutase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
Identities = 199/413 (48%), Positives = 272/413 (65%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG P +G++++D D YIDYVGSWGP I+GH +L A
Sbjct: 15 IPGGVNSPVRAFNGVGGTPCFIKRAQGAYIYDADDKAYIDYVGSWGPMILGHNHPAILEA 74
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ T K G SFGAP +E +AE V VPS+E +R V+SGTEA M +RLAR +TGR++
Sbjct: 75 VITTAKNGLSFGAPTEIEITMAEKVRELVPSMESLRMVSSGTEATMSAIRLARGYTGRDK 134
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KFEGCYHGHAD LVKAGSG TLG+P+SPG+P+ TLT +N++ ++ +F
Sbjct: 135 ILKFEGCYHGHADALLVKAGSGALTLGVPNSPGIPEDFAKHTLTVSYNNIDEVKEIFAKY 194
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIA II+EPV GN I P FL +R + + ++LIFDEVMTGFR+A GGAQ ++
Sbjct: 195 ADEIACIIVEPVAGNMNCIPPVEGFLEGLRDVCDQYSSVLIFDEVMTGFRVALGGAQAHY 254
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
+ PD PVGA+GG+++IM+ +AP GP+YQAGTLSGNP+AM AG+ +L
Sbjct: 255 NIKPDLTTLGKVIGGGMPVGAFGGKQEIMDYIAPVGPVYQAGTLSGNPIAMAAGLASLTE 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE--GPVYNFEDAKK 358
L + ++ L+ T +L G+ A ++ G ++ Y+ MFGFFFTE P+ +E A +
Sbjct: 315 LAQGNKHQQLSSATEKLAMGLKAAAERNGVSLSVNYVGAMFGFFFTEDKNPITTYEQATQ 374
Query: 359 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ F RF+ ML+EGVY APS +E GF S +H+ D I+ T+ AA+K Q+
Sbjct: 375 CDGEMFKRFFHLMLDEGVYLAPSSYETGFLSTSHTDDIIEKTLVAADKCFAQL 427
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B7KA18 | GSA_CYAP7 | 5, ., 4, ., 3, ., 8 | 0.7274 | 1.0 | 0.9491 | yes | no |
| B8HYK1 | GSA_CYAP4 | 5, ., 4, ., 3, ., 8 | 0.7372 | 1.0 | 0.9513 | yes | no |
| Q2JMP7 | GSA_SYNJB | 5, ., 4, ., 3, ., 8 | 0.7153 | 1.0 | 0.9426 | yes | no |
| A2C0U2 | GSA_PROM1 | 5, ., 4, ., 3, ., 8 | 0.7055 | 1.0 | 0.9602 | yes | no |
| A2BVE5 | GSA_PROM5 | 5, ., 4, ., 3, ., 8 | 0.6836 | 1.0 | 0.9491 | yes | no |
| Q55665 | GSA_SYNY3 | 5, ., 4, ., 3, ., 8 | 0.7230 | 0.9927 | 0.9422 | N/A | no |
| A5GUJ2 | GSA_SYNR3 | 5, ., 4, ., 3, ., 8 | 0.7031 | 1.0 | 0.9470 | yes | no |
| A7NKV1 | GSA_ROSCS | 5, ., 4, ., 3, ., 8 | 0.5975 | 0.9975 | 0.9447 | yes | no |
| P18492 | GSA_HORVU | 5, ., 4, ., 3, ., 8 | 0.8369 | 1.0 | 0.8763 | N/A | no |
| P45621 | GSA_SOYBN | 5, ., 4, ., 3, ., 8 | 0.8661 | 1.0 | 0.8819 | yes | no |
| A3PBK8 | GSA_PROM0 | 5, ., 4, ., 3, ., 8 | 0.6861 | 1.0 | 0.9491 | yes | no |
| A5GMT2 | GSA_SYNPW | 5, ., 4, ., 3, ., 8 | 0.7007 | 1.0 | 0.9491 | yes | no |
| Q46GT9 | GSA_PROMT | 5, ., 4, ., 3, ., 8 | 0.7055 | 1.0 | 0.9513 | yes | no |
| Q7VDA1 | GSA_PROMA | 5, ., 4, ., 3, ., 8 | 0.6958 | 1.0 | 0.9491 | yes | no |
| Q7V677 | GSA_PROMM | 5, ., 4, ., 3, ., 8 | 0.7047 | 0.9805 | 0.9415 | yes | no |
| Q39566 | GSA_CHLRE | 5, ., 4, ., 3, ., 8 | 0.6958 | 1.0 | 0.8876 | N/A | no |
| A9BEA5 | GSA_PROM4 | 5, ., 4, ., 3, ., 8 | 0.6982 | 1.0 | 0.9513 | yes | no |
| Q3AWP4 | GSA_SYNS9 | 5, ., 4, ., 3, ., 8 | 0.7196 | 0.9805 | 0.9415 | yes | no |
| Q7U598 | GSA_SYNPX | 5, ., 4, ., 3, ., 8 | 0.7031 | 1.0 | 0.9602 | yes | no |
| B1XIT5 | GSA_SYNP2 | 5, ., 4, ., 3, ., 8 | 0.7445 | 1.0 | 0.9513 | yes | no |
| Q0I8G1 | GSA_SYNS3 | 5, ., 4, ., 3, ., 8 | 0.7196 | 0.9805 | 0.9200 | yes | no |
| Q40147 | GSA_SOLLC | 5, ., 4, ., 3, ., 8 | 0.8710 | 1.0 | 0.8544 | N/A | no |
| P31593 | GSA_TOBAC | 5, ., 4, ., 3, ., 8 | 0.8832 | 1.0 | 0.8598 | N/A | no |
| B1X023 | GSA_CYAA5 | 5, ., 4, ., 3, ., 8 | 0.7420 | 1.0 | 0.9491 | yes | no |
| B7K2I1 | GSA_CYAP8 | 5, ., 4, ., 3, ., 8 | 0.7372 | 1.0 | 0.9491 | yes | no |
| A9B550 | GSA_HERA2 | 5, ., 4, ., 3, ., 8 | 0.6082 | 1.0 | 0.9580 | yes | no |
| Q3M3B9 | GSA_ANAVT | 5, ., 4, ., 3, ., 8 | 0.7396 | 1.0 | 0.9513 | yes | no |
| Q3ACS9 | GSA_CARHZ | 5, ., 4, ., 3, ., 8 | 0.5965 | 0.9951 | 0.9467 | yes | no |
| C0ZAH4 | GSA2_BREBN | 5, ., 4, ., 3, ., 8 | 0.5804 | 0.9975 | 0.9557 | yes | no |
| B2J7M9 | GSA_NOSP7 | 5, ., 4, ., 3, ., 8 | 0.7445 | 1.0 | 0.9513 | yes | no |
| A2BPW6 | GSA_PROMS | 5, ., 4, ., 3, ., 8 | 0.6836 | 1.0 | 0.9491 | yes | no |
| B0CC57 | GSA_ACAM1 | 5, ., 4, ., 3, ., 8 | 0.7299 | 1.0 | 0.9513 | yes | no |
| P24630 | GSA_SYNP6 | 5, ., 4, ., 3, ., 8 | 0.7372 | 1.0 | 0.9491 | yes | no |
| Q110Z9 | GSA_TRIEI | 5, ., 4, ., 3, ., 8 | 0.7274 | 1.0 | 0.9513 | yes | no |
| Q6YZE2 | GSA_ORYSJ | 5, ., 4, ., 3, ., 8 | 0.8418 | 1.0 | 0.8598 | yes | no |
| A8G3J9 | GSA_PROM2 | 5, ., 4, ., 3, ., 8 | 0.6934 | 1.0 | 0.9491 | yes | no |
| Q3ALU9 | GSA_SYNSC | 5, ., 4, ., 3, ., 8 | 0.7196 | 0.9805 | 0.9415 | yes | no |
| Q8DLK8 | GSA_THEEB | 5, ., 4, ., 3, ., 8 | 0.7372 | 1.0 | 0.9405 | yes | no |
| Q7V2J3 | GSA_PROMP | 5, ., 4, ., 3, ., 8 | 0.6909 | 1.0 | 0.9491 | yes | no |
| A2C7I7 | GSA_PROM3 | 5, ., 4, ., 3, ., 8 | 0.7047 | 0.9805 | 0.9415 | yes | no |
| Q31QJ2 | GSA_SYNE7 | 5, ., 4, ., 3, ., 8 | 0.7396 | 1.0 | 0.9491 | yes | no |
| Q42522 | GSA2_ARATH | 5, ., 4, ., 3, ., 8 | 0.8686 | 1.0 | 0.8707 | yes | no |
| P42799 | GSA1_ARATH | 5, ., 4, ., 3, ., 8 | 0.8515 | 1.0 | 0.8670 | no | no |
| Q2RJ31 | GSA_MOOTA | 5, ., 4, ., 3, ., 8 | 0.5849 | 1.0 | 0.9405 | yes | no |
| Q31C50 | GSA_PROM9 | 5, ., 4, ., 3, ., 8 | 0.6861 | 1.0 | 0.9470 | yes | no |
| Q7NPI4 | GSA_GLOVI | 5, ., 4, ., 3, ., 8 | 0.6544 | 0.9927 | 0.9444 | yes | no |
| Q85WB7 | GSA_BRANA | 5, ., 4, ., 3, ., 8 | 0.8588 | 1.0 | 0.8689 | N/A | no |
| Q8YS26 | GSA_NOSS1 | 5, ., 4, ., 3, ., 8 | 0.7396 | 1.0 | 0.9513 | yes | no |
| Q2JS70 | GSA_SYNJA | 5, ., 4, ., 3, ., 8 | 0.7177 | 1.0 | 0.9426 | yes | no |
| B0JPW6 | GSA_MICAN | 5, ., 4, ., 3, ., 8 | 0.7347 | 1.0 | 0.9491 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00150799 | glutamate-1-semialdehyde 2,1-aminomutase (EC-5.4.3.8) (479 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.I.4290.1 | glutamyl-tRNA reductase (EC-1.2.1.70) (471 aa) | • | • | • | • | • | 0.995 | ||||
| estExt_Genewise1_v1.C_LG_II0707 | glutamyl-tRNA reductase (EC-1.2.1.70) (469 aa) | • | • | • | • | • | 0.995 | ||||
| eugene3.00020758 | hypothetical protein (430 aa) | • | • | • | • | • | 0.995 | ||||
| gw1.IX.2784.1 | glutamyl-tRNA reductase (EC-1.2.1.70) (503 aa) | • | • | • | • | • | 0.994 | ||||
| fgenesh4_pm.C_LG_VII000271 | hydroxymethylbilane synthase (EC-2.5.1.61) (363 aa) | • | • | • | • | 0.970 | |||||
| fgenesh4_pg.C_LG_V000312 | hydroxymethylbilane synthase (EC-2.5.1.61) (364 aa) | • | • | • | • | 0.970 | |||||
| gw1.13426.3.1 | Delta-aminolevulinic acid dehydratase (293 aa) | • | • | • | 0.969 | ||||||
| gw1.16698.2.1 | Delta-aminolevulinic acid dehydratase (254 aa) | • | • | • | 0.962 | ||||||
| gw1.148.3.1 | uroporphyrin-III C-methyltransferase (EC-2.1.1.107) (328 aa) | • | • | 0.954 | |||||||
| gw1.182.88.1 | uroporphyrinogen decarboxylase (EC-4.1.1.37) (357 aa) | • | • | • | • | 0.930 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 411 | |||
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 0.0 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 0.0 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 0.0 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 0.0 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 0.0 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-124 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 1e-109 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 1e-70 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 7e-69 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 1e-63 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 1e-60 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 1e-52 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 9e-50 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 8e-49 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 4e-48 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 3e-46 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 7e-46 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 8e-46 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 1e-43 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 2e-42 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 6e-41 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 6e-41 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 7e-41 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 1e-40 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 2e-39 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 3e-39 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 5e-39 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 8e-38 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 7e-37 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 1e-36 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 1e-36 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-36 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 1e-35 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 5e-35 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 1e-34 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 3e-34 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 3e-34 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 9e-34 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 4e-33 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 2e-32 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 3e-32 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 4e-32 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 3e-31 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 2e-30 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 3e-30 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 2e-29 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 3e-28 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 5e-28 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 6e-27 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 2e-25 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 1e-23 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 3e-23 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 4e-22 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 1e-21 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 6e-21 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 1e-20 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 2e-20 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 4e-20 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 5e-20 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 8e-20 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 2e-19 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 5e-19 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 3e-18 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 3e-18 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 7e-18 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 7e-18 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 1e-17 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 2e-17 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 8e-17 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 2e-15 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 2e-15 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 2e-14 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 3e-14 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 1e-13 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 2e-13 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 1e-12 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 2e-11 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 4e-11 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 4e-11 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 8e-10 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 1e-06 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 1e-06 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 5e-06 | |
| TIGR01822 | 393 | TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co | 5e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 7e-06 | |
| PRK06939 | 397 | PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym | 1e-05 | |
| TIGR00858 | 360 | TIGR00858, bioF, 8-amino-7-oxononanoate synthase | 1e-04 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-04 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 3e-04 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 868 bits (2244), Expect = 0.0
Identities = 353/411 (85%), Positives = 384/411 (93%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVGGQPIVFD VKGS+ WD+DGNEYIDYVGSWGPAIIGHADD+VLAA
Sbjct: 64 MPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAA 123
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ETMKKGTSFGAPCLLENVLAEMVI AVPS+EMVRFVNSGTEACMGVLRLARA+TGRE+
Sbjct: 124 LAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREK 183
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK AT TLTAP+ND+ A++ LFE N
Sbjct: 184 IIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEAN 243
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
KGEIAA+ILEPVVGNSGFI PK +FL +R ITKENGALL+FDEVMTGFR+AYGGAQEYF
Sbjct: 244 KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYF 303
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+TPDLTTLGK+IGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR
Sbjct: 304 GITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL+KIT +L QGI++AGKKAGH +CGGYISGMFGFFFTEGPVYNF DAKKS+
Sbjct: 364 LQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSD 423
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T KFARF+RGMLEEGVY APSQFEAGFTSLAH+ +DI TI AAE+VL +I
Sbjct: 424 TAKFARFHRGMLEEGVYLAPSQFEAGFTSLAHTEEDIDFTIAAAERVLARI 474
|
Length = 474 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 776 bits (2006), Expect = 0.0
Identities = 269/411 (65%), Positives = 320/411 (77%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAFKSVGG P + KG++++D+DGNEYIDYVGSWGP I+GHA +V+ A
Sbjct: 15 IPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEA 74
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E +KG SFGAP LE LAE+VI VPSIEMVR VNSGTEA M +RLAR +TGR++
Sbjct: 75 VIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDK 134
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD LVKAGSG ATLGLPDSPGVP+ TLTAP+ND+ A+E LFE
Sbjct: 135 IIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEY 194
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIAA+I+EPV GN G + PKP FL +R + E+GALLIFDEVMTGFR+A GGAQ Y+
Sbjct: 195 GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYY 254
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSGNPLAM AG+ TLK
Sbjct: 255 GVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKL 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
LKEPG YE L +T L +G+ +A KKAG + + MFG FFT+ PV N+ DAKKS+
Sbjct: 315 LKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSD 374
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T +FARF+ ML+EGVY APSQFEAGF S AH+ +DI+ T+ AA K +
Sbjct: 375 TERFARFFHAMLDEGVYLAPSQFEAGFVSAAHTDEDIEKTLEAARKAFAAL 425
|
Length = 426 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 630 bits (1628), Expect = 0.0
Identities = 243/412 (58%), Positives = 306/412 (74%), Gaps = 1/412 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAFKSVGG PI + KG+++ D+DGNEYIDYV WGP I+GHA V+ A
Sbjct: 18 IPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEA 77
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E +++G SFGAP LE LAE++I VPSIE VRFVNSGTEA M +RLARA+TGR++
Sbjct: 78 VQEQLERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDK 137
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGH+D LVKAGSG ATLG P SPGVP TL P+ND+ ALE FE
Sbjct: 138 IIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEY 197
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IAA+I+EPV GN G + P+P FL +R +T+E+GALLIFDEV+TGFR+A GGAQ Y+
Sbjct: 198 GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYY 257
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GV PDLTTLGKIIGGGLP+GA+GGR +IME +AP GP+YQAGTLSGNPLAM AG+ TL+
Sbjct: 258 GVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEE 317
Query: 301 LKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L G YE L+ + L +G+ A ++ G + + MFG FFTE V N+ DAK+S
Sbjct: 318 LMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRS 377
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ +FA+F+ +L GVY APSQFEAGF S AH+ +DI T+ AA++ +++
Sbjct: 378 DVERFAKFFHHLLNRGVYLAPSQFEAGFLSTAHTEEDIDRTLEAADEAFKEL 429
|
Length = 432 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 598 bits (1544), Expect = 0.0
Identities = 248/411 (60%), Positives = 309/411 (75%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
PGGVNSPVRAFKSVG P KG++++D+DGNEYIDYV SWGP I+GHA +V+ A
Sbjct: 13 FPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEA 72
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E +++GTS+GAP E +LA+ +IS VPS+EMVRFVNSGTEA M +RLAR +TGR++
Sbjct: 73 VKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDK 132
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGH D LVKAGSG ATLGLP SPGVP+ TL P+ND+ ALE +FE
Sbjct: 133 IIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY 192
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIA +I+EPV GN G + PKP+FL +R +T+E G+LLIFDEVMTGFR+A GGAQEYF
Sbjct: 193 GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYF 252
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GV PDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSGNPLAM AG+ TLK
Sbjct: 253 GVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKL 312
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L E G Y L+++ L +G+ + + G + MF FFTE V N+ DAKKS+
Sbjct: 313 LDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSD 372
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
T FA+F+ ML++GV+ PSQFEA F S AH+ +DI++TI AAE+V ++
Sbjct: 373 TELFAKFFHEMLDKGVFLPPSQFEACFLSAAHTEEDIENTIEAAEEVFAEL 423
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 522 bits (1346), Expect = 0.0
Identities = 207/410 (50%), Positives = 288/410 (70%), Gaps = 1/410 (0%)
Query: 3 GGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 61
GGVNSP R++K+VGG P+V + KG++ +D+DGN+YIDY+ ++GP I GHA + A+
Sbjct: 19 GGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAI 78
Query: 62 GETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 121
E + G +G P LE A+M+ A+PS+E VRFVNSGTEA M +R+ARA+TGR +I
Sbjct: 79 TEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKI 138
Query: 122 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181
IKF GCYHGH+D LV AGSG +TLG PDS GVPK E +T PFND+ AL+ +
Sbjct: 139 IKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWG 198
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG 241
E+AA+++EP+VGN G + PKP FL A+ + E GAL+I+DEV+T FR YGGAQ+ G
Sbjct: 199 DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLG 258
Query: 242 VTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301
V PDLT LGKIIGGGLP+GAYGGR+DIME VAP GP YQAGT++GNP +M AGI L+ L
Sbjct: 259 VEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVL 318
Query: 302 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 361
++ G YE L+++ L +GI++A +K G I + G +FT+ V N++ A++S+
Sbjct: 319 QQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDG 378
Query: 362 TKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
F +F++ ML +G+ APS++EA F + AH+ +DI+ T+ A ++ Q+
Sbjct: 379 EAFGKFFKLMLNQGINLAPSKYEAWFLTTAHTEEDIEETLEAVDRAFAQL 428
|
Length = 428 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 364 bits (938), Expect = e-124
Identities = 142/406 (34%), Positives = 206/406 (50%), Gaps = 17/406 (4%)
Query: 14 SVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA 73
+V P+V +G++++D+DGN Y+D++ G +GH +V+ AL E + K T F
Sbjct: 14 TVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSL 73
Query: 74 P---CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129
LAE++++ P ++ V FVNSGTEA L+LARA+TGR++II FEG YH
Sbjct: 74 GFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYH 133
Query: 130 GHADPFLVKAGSGVATLG----LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185
G L GS G LP VP Y +D+ ALE E + E+A
Sbjct: 134 GRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVA 193
Query: 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244
A+I+EP+ G G I P P +L A+R + +++G LLI DEV TGF R A E+FGV P
Sbjct: 194 AVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEP 253
Query: 245 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304
D+ TLGK +GGGLP+GA GR +IM+ PAGP GT GNPLA A + L+ L+E
Sbjct: 254 DIVTLGKGLGGGLPLGAVLGREEIMD-AFPAGPGLHGGTFGGNPLACAAALAVLEVLEEE 312
Query: 305 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364
G E ++ L + + + +K M G + K +
Sbjct: 313 GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRA-----TKPPDKELA 367
Query: 365 ARFYRGMLEEGVYFAPS--QFEAGFTSLAHSSDDIQHTITAAEKVL 408
A+ + LE G+ PS L + ++I + A ++ L
Sbjct: 368 AKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = e-109
Identities = 160/402 (39%), Positives = 221/402 (54%), Gaps = 5/402 (1%)
Query: 2 PGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 61
PGGVNSPVRA +SVG P + S G D G +ID+ GSWG I GH+ ++ A+
Sbjct: 19 PGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAI 78
Query: 62 GETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ ++GTS+G E + AE + S + +RFV+SGTEA M +RLAR TGR
Sbjct: 79 QQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSI 138
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE--TLTAPFNDVSALENLFE 178
IIKF GCYHGHAD L G + L + TL+ P+ND + +
Sbjct: 139 IIKFLGCYHGHADTLL--QGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMN 196
Query: 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQE 238
+ +A +I EP+ N G + PKP F+ I + + G+L I DEV+TGFR+A GGA
Sbjct: 197 SLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAA 256
Query: 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 298
+ V PD+T GKI+GGGLP A + IM+ +AP G ++QAGTLSGNPLAM AG ++
Sbjct: 257 IYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASI 316
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 358
+E G Y L+ + I + + G + MF FFF E N +A+
Sbjct: 317 NLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQL 376
Query: 359 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400
S+ F FY+ +GVY +PS FEA F S AHS +++ +
Sbjct: 377 SDIEAFQTFYQSAFSKGVYLSPSPFEASFLSSAHSMENLDYA 418
|
Length = 433 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 1e-70
Identities = 124/396 (31%), Positives = 193/396 (48%), Gaps = 41/396 (10%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMV 85
G+H+WD+DGNEYI+Y +GHA V+ A+ E ++ G +F P +E AE
Sbjct: 38 SGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNFTRPSAIELDAAESF 97
Query: 86 ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 145
+ + +MV+F +G++A +RLARA+TGR+ + + C PF + T
Sbjct: 98 LELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVAR---CAD---HPFFSTDDWFIGT 151
Query: 146 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 205
P S G+P + T+T +ND+++LE LFE++ G IA +ILEP + P+ F
Sbjct: 152 T--PMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATADE----PQDGF 205
Query: 206 LNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 265
L+ +RR+ ENGAL I DE++TGFR GAQ+ +G+ PDL+ GK +G G V A G+
Sbjct: 206 LHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSCFGKALGNGFAVSALAGK 265
Query: 266 RDIMEMVAPAGPMYQAG---------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316
R+ ME+ G + T A+ A I T+ ++ E L++ +
Sbjct: 266 REYMEL----GGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAK 321
Query: 317 LTQGIIDAGKKAG---HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373
L G+ +A + G H G + + T + + S+ + F + +
Sbjct: 322 LAAGVNEAAAEHGLQDHVRVSGRPCCL--TYSTLDG-----NGQPSQAFR-TLFLQETIR 373
Query: 374 EGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 409
GV PS S AH DI+ TI A L
Sbjct: 374 RGV-LMPSL----VVSYAHGDADIERTIDAVHGALG 404
|
Length = 431 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 7e-69
Identities = 102/318 (32%), Positives = 148/318 (46%), Gaps = 34/318 (10%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLA 82
KG ++D+DG Y+D++ +GH +++ A+ E K T LA
Sbjct: 6 KGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQLA 65
Query: 83 EMVISAVP-SIEMVRFVNSGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPF 135
E + P ++ V F+NSG+EA ++LAR TG+ +II F G +HG
Sbjct: 66 EKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRTLGA 125
Query: 136 L-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-----------LFENNKGE 183
L V SG P PGV P+ D+ A E + +
Sbjct: 126 LSVTGSSGYKKGFGPSLPGVYF--------LPYPDLEAAEEELACADEALRLIKAVHDDN 177
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
IAA+I+EP+ G G + P P FL +R I K++G LLI DEV TGF R A E++GV
Sbjct: 178 IAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGV 237
Query: 243 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 302
TPD+ TL K + GGLP+ A +IM+ P GT GNPLA A + L ++
Sbjct: 238 TPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGS---HGGTFGGNPLACAAALAVLDIIE 294
Query: 303 EPGTYEYLNKITGELTQG 320
+ + + L +G
Sbjct: 295 DENLLQNAQEKGDYLRKG 312
|
Length = 338 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 1e-63
Identities = 106/319 (33%), Positives = 150/319 (47%), Gaps = 27/319 (8%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAP 74
P+V +G+++WD G EY+D+ +GH ++ AL E +K F
Sbjct: 25 PVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNE 84
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGH 131
E LAE ++ P + V F NSG EA L+LAR +TG + +II FE +HG
Sbjct: 85 PQAE--LAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGR 142
Query: 132 ADPFLVKAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189
+ A P PG PFND+ ALE + + AA+I+
Sbjct: 143 T-LGALSATGQPKYRKGFGPLLPGF--------RHVPFNDIEALEAAID---EDTAAVIV 190
Query: 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248
EP+ G G I P+FL A+R + E+GALLI DEV TG R A E++GV PD+ T
Sbjct: 191 EPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT 250
Query: 249 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
L K +GGG P+GA +I P T GNPLA + L+ L E G E
Sbjct: 251 LAKALGGGFPIGAMLATEEIASAFTPGD---HGSTFGGNPLACAVALAVLEVLLEEGLLE 307
Query: 309 YLNKITGELTQGIIDAGKK 327
+ + L Q + + ++
Sbjct: 308 NVREKGEYLLQRLRELKRR 326
|
Length = 404 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 1e-60
Identities = 104/315 (33%), Positives = 154/315 (48%), Gaps = 34/315 (10%)
Query: 14 SVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---- 69
P+V +G++++D+DGNEY+D++ +GH +V+ A+ + K
Sbjct: 34 GRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHT 93
Query: 70 --SFGAPCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125
+ P + LAE + + P V F NSG EA +++ARA+TGR +I F+
Sbjct: 94 RDLYYEPYVE---LAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFD 150
Query: 126 GCYHGH--------ADPFLVKAGSG-----VATLGLPDSPGVPKGATYETLTAPFNDVSA 172
G +HG KAG G V + P+ P G E +
Sbjct: 151 GAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA--LEY 208
Query: 173 LENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+E + + E+AAII+EP+ G G I P FL A+R++ +E+G LLI DEV TGF
Sbjct: 209 IERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGF 268
Query: 230 -RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288
R A E+FGV PD+ TL K +GGGLP+ A GR +IM+ GT GNP
Sbjct: 269 GRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDWPPGG----HGGTFGGNP 324
Query: 289 LAMTAGIHTLKRLKE 303
+A A + L ++E
Sbjct: 325 VACAAALAVLDVIEE 339
|
Length = 447 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 1e-52
Identities = 104/332 (31%), Positives = 162/332 (48%), Gaps = 38/332 (11%)
Query: 12 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---- 67
+ G P+ KG++++D++G EY+D+V +GHA +++ AL E ++K
Sbjct: 3 MNTYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV 62
Query: 68 GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-----RERII 122
+ E LAE + + V F NSG EA L+LAR +TG +++II
Sbjct: 63 SNLYYTEPQEE--LAEK-LVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKII 119
Query: 123 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY-ETLT-----APFNDVSALENL 176
FE +HG T+G + G PK E L AP+ND+ +L+
Sbjct: 120 AFENSFHGR-------------TMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKA 166
Query: 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235
+ E AA+I+EP+ G G +FL A+R I K+ ALLIFDEV TG R
Sbjct: 167 ID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFF 223
Query: 236 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 295
A E++G+ PD+ TL K +GGG+P+GA + ++ E P T GNPLA A +
Sbjct: 224 AYEHYGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGD---HGSTFGGNPLACAAAL 280
Query: 296 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327
L+ +++ E + + + + + GK
Sbjct: 281 AVLEVIEKERLLENVKEKGDYFKERLEELGKN 312
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 9e-50
Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
PI F +G+ +WD DG EY+D++ +GH +++ A+ E K TS +
Sbjct: 21 LPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYI 80
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIK-----FEGCY 128
E LAE + + ++ V F NSG EA ++LAR + ++ I K E +
Sbjct: 81 EPQEE--LAEK-LVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSF 137
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL-----TAPFNDVSALENLFENNKGE 183
HG +ATL P +G +E L PFND+ AL+ +
Sbjct: 138 HGRT----------LATLSATGQPKYQEG--FEPLVEGFIYVPFNDIEALKAAITDK--- 182
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGAQE 238
AA++LEP+ G G ++L A+R + ENG LLI DEV TG AY +
Sbjct: 183 TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAY----Q 238
Query: 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 298
++G+ PD+ TL K +GGG+P+GA + + ++ P T GNPLA A + +
Sbjct: 239 HYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGD---HGSTFGGNPLACAAALAVI 295
Query: 299 KRLKE 303
+ ++E
Sbjct: 296 EIIEE 300
|
Length = 396 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 8e-49
Identities = 103/316 (32%), Positives = 146/316 (46%), Gaps = 49/316 (15%)
Query: 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGA---P 74
+ +G + + +DG EY+D+ A +GH +V+ A+ E K G
Sbjct: 27 LPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYE 86
Query: 75 CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133
+L+ LAE + P ++ F NSG EA G L+LA+ T R II F GC+HG
Sbjct: 87 SILK--LAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT- 143
Query: 134 PFLVKAGSGVATLGL------------PDSPGV-----------PKGATYETLTAPFNDV 170
+ L + P V PKG E +
Sbjct: 144 ---------LGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFL--ECL 192
Query: 171 SALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228
LE+LF++ E+AA+I+EPV+G G+I P FL +R I +G LLIFDEV TG
Sbjct: 193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTG 252
Query: 229 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 287
F R A + FGV PD+ T+ K I GLP+ A +++ME P G T GN
Sbjct: 253 FGRTGEWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQ-WPLGS--HGTTFGGN 309
Query: 288 PLAMTAGIHTLKRLKE 303
P+A A + TL+ +KE
Sbjct: 310 PVACAAALATLEVIKE 325
|
Length = 433 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 4e-48
Identities = 98/315 (31%), Positives = 145/315 (46%), Gaps = 23/315 (7%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDY-VGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 77
P+ +G+ D+DG+ Y D+ +G G A+ GH+ V AL E ++G + P
Sbjct: 58 PLFVAEARGARFTDVDGHRYDDFCLGDTG-AMFGHSPAPVARALAEQARRGLTTMLPSED 116
Query: 78 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 137
+ E ++ + + + T+A VLR ARA TGR +I+ F GCYHG D V
Sbjct: 117 AAWVGEE-LARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFV 175
Query: 138 KAGSGVAT-----LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192
G LG AT T FND++ALE G++AA++ EP
Sbjct: 176 DLVDGRPVQRPGLLG----QVHDLTAT--TRVVEFNDLAALEAALA--DGDVAAVLAEPA 227
Query: 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKI 252
+ N G + P+P F A+R +T+ G LL+ DE T GG G+ PD +GK
Sbjct: 228 MTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEPDFLVVGKP 286
Query: 253 IGGGLPVGAYGGRRDI---MEMVAPAGPMYQAG---TLSGNPLAMTAGIHTLKRLKEPGT 306
I GG+P YG ++ + + P +G TLS N LAM A TL +
Sbjct: 287 IAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAA 346
Query: 307 YEYLNKITGELTQGI 321
Y ++ + L G+
Sbjct: 347 YAHMLALAARLAAGL 361
|
Length = 453 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 3e-46
Identities = 99/309 (32%), Positives = 153/309 (49%), Gaps = 30/309 (9%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG------ 72
P+V + + +WDI+GNEYID++ +GH + +V+ A+ E K +
Sbjct: 24 PLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFP 83
Query: 73 -APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
P LL L E+ P V F SG++A G ++ ARA+T R +I+ + Y+G
Sbjct: 84 VEPLLLAEKLIEIAPGDNPK---VSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGS 140
Query: 132 --------ADPFLVKAG----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179
F V+A S V + PD P G + V ++ FE
Sbjct: 141 TYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKM--ECVEYIKEKFEG 198
Query: 180 N--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236
+AA+ EP+ G++G I P D+ +++I E+G LL+ DEV +G R A
Sbjct: 199 EVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFA 258
Query: 237 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 296
E+FGV PD+ TLGK +GGGLP+ A GR +IM+ + P + TLSGNP+A A +
Sbjct: 259 IEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAF---TLSGNPVASAAALA 315
Query: 297 TLKRLKEPG 305
++ ++E
Sbjct: 316 VIEEIEEKN 324
|
Length = 443 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 7e-46
Identities = 104/300 (34%), Positives = 149/300 (49%), Gaps = 23/300 (7%)
Query: 12 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GT 69
F + G PI KG+ + D +G Y+D+ +GH V A+ E +
Sbjct: 5 FPTYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV 64
Query: 70 SFGAPCLLENVLAEMV---ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 126
S L N L E V ++ + ++V F NSG EA L+LAR TG+ +I+ FE
Sbjct: 65 S----NLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQ 120
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186
+HG F + +G + P +P G T+ PFND+ AL+ + E+AA
Sbjct: 121 SFHGRT--FGTMSATGQEKIKEGFGPLLP-GFTH----VPFNDIKALKEVMN---EEVAA 170
Query: 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245
++LE V G G I P FL ++ + K+ GALLI DEV TG R A E FG+ PD
Sbjct: 171 VMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD 230
Query: 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
+ T+ K +G G+PVGA G++ E+ GP T GNPLAM A L+ +K+P
Sbjct: 231 IVTVAKGLGNGIPVGAMIGKK---ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPS 287
|
Length = 377 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 8e-46
Identities = 106/316 (33%), Positives = 152/316 (48%), Gaps = 43/316 (13%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFG 72
P+V + +G + D+DGN Y+D+ +GHA +V+ A+ E +K T F
Sbjct: 36 YPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFY 95
Query: 73 APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130
+E LAE ++ P V F NSGTE+ +++AR TGR+ II F G +HG
Sbjct: 96 YEPAVE--LAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHG 153
Query: 131 -----------------HADPFLVKAGSGVATLGLPDSPGVP-KGATYETLTAPFNDVSA 172
P + GV + P+ P E N V
Sbjct: 154 RTYGSLSLTASKPVQRKGFFPLM----PGVIHVPYPNPYRNPWGIENPEECG---NAVLD 206
Query: 173 L--ENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228
+ LF+ E+AAII+EP+ G G++ P +F +R++ + G LLI DEV TG
Sbjct: 207 FIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTG 266
Query: 229 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 287
R A E+FGV PD+ TL K I GGLP+GA GR ++M + P G A T GN
Sbjct: 267 MGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFL--PPGS--HANTFGGN 322
Query: 288 PLAMTAGIHTLKRLKE 303
P+A A + TL+ L+E
Sbjct: 323 PVAAAAALATLEELEE 338
|
Length = 441 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-43
Identities = 97/331 (29%), Positives = 148/331 (44%), Gaps = 45/331 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 74
P+V KG +WD++G +Y D++ ++ GH ++LAAL +K T +F
Sbjct: 14 PVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYND 73
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 126
L LAE I+ + + V +NSG EA L+ AR + + +II G
Sbjct: 74 VL---GLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNG 130
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSPGV-----PKGATYETLTAPFNDVSALENLFENNK 181
+ G + P P +E +NDV ALE L ++
Sbjct: 131 NFSGRT----------IGACSASTDPKCYNNFGPFVPGFEL--VDYNDVEALEKLLQDPN 178
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQE 238
+AA I+EP+ G +G I P +L + + K+ LLI DE+ TG L G A +
Sbjct: 179 --VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTG--LGRTGKLLAHD 234
Query: 239 YFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGIH 296
+ GV PD+ LGK + GGL P+ A D+M ++ P + G T GNPLA +
Sbjct: 235 HEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPG----EHGSTYGGNPLACAVAVE 290
Query: 297 TLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327
L+ LKE E ++ G+ + KK
Sbjct: 291 ALEVLKEEKLAENAQRLGEVFRDGLKELLKK 321
|
Length = 400 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 108/325 (33%), Positives = 151/325 (46%), Gaps = 45/325 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 74
P+ +G+ +WD+DG EY+D +G +GHA V+ A+ + S F
Sbjct: 26 PLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE 85
Query: 75 CLLENVLAEMVIS--AVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132
+ LAE ++ P V F NSG EA +LAR TGR +I+ EG +HG
Sbjct: 86 PQIA--LAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRT 142
Query: 133 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-----PFNDVSALENLFENNKGEIAAI 187
G+ T G P K A +E L P+ DV AL + + AA+
Sbjct: 143 ------MGALALT-GQPA-----KRAPFEPLPGGVEHVPYGDVDALAAAVD---DDTAAV 187
Query: 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246
LEP+ G +G + P +L A R IT +GALL+ DEV TG R A ++ GVTPD+
Sbjct: 188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDV 247
Query: 247 TTLGKIIGGGLPVGAYGGRRDIMEMVA--PAGPMYQAG----TLSGNPLAMTAGIHTLKR 300
TL K +GGGLP+GA +A PA + G T GNP+A A + L
Sbjct: 248 VTLAKGLGGGLPIGA---------CLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDT 298
Query: 301 LKEPGTYEYLNKITGELTQGIIDAG 325
+ G E ++ +L GI G
Sbjct: 299 IASEGLLENAERLGEQLRAGIEALG 323
|
Length = 398 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 6e-41
Identities = 105/335 (31%), Positives = 154/335 (45%), Gaps = 55/335 (16%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
PI D + +WD++G EY+D+ G GH +V+AA+ +KK C
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK---LSHTCF-- 78
Query: 79 NVLAEMVISAVPSIEMVRFVN---------------SGTEACMGVLRLARAFTGRERIIK 123
V++ P +E+ +N +G+EA +++ARA T R +I
Sbjct: 79 -----QVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIA 133
Query: 124 FEGCYHGHADPFLVKAGSGVATLGL-----PDSPGV---PKGATYETLTAPFNDVS---- 171
F G YHG TL L P S G+ P P + VS
Sbjct: 134 FTGAYHGRT----------HYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDA 183
Query: 172 --ALENLFENNK--GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227
++E +F+N+ +IAAII+EPV G GF A P F+ +R + E+G +LI DEV T
Sbjct: 184 IASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT 243
Query: 228 GF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 286
G R A E GV DLTT K I GG P+ GR ++M+ +AP G GT +G
Sbjct: 244 GAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGG---LGGTYAG 300
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
NP+A A + LK ++ + N + +L G+
Sbjct: 301 NPIACAAALAVLKVFEQENLLQKANALGEKLKDGL 335
|
Length = 425 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 6e-41
Identities = 109/333 (32%), Positives = 160/333 (48%), Gaps = 42/333 (12%)
Query: 13 KSVGGQPIVF-DSVKGSHMWDIDGNEYIDYVGSWGPAII--GHADDQVLAALGETMKKGT 69
+ VG ++ D + + +WD +G YID+ G A++ GH +V+AA+ + + T
Sbjct: 16 RGVGMTTQIYADRAENAEIWDKEGRRYIDFAA--GIAVVNTGHRHPRVIAAVKAQLDRFT 73
Query: 70 SFGAPCL-LEN--VLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 124
+ EN LAE + + VP + FV +G EA +++ARA TGR +I F
Sbjct: 74 HTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAF 133
Query: 125 EGCYHGHADPFL----------VKAGSGVATLGLPDSPGVP-----KGATYETLTAPFND 169
G +HG F+ K G G +PD VP G + E
Sbjct: 134 GGGFHGRT--FMGMSLTGKVVPYKVGFGAM---MPDVYHVPFPVELHGVSVE------QS 182
Query: 170 VSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227
++AL+ LF+ + +AAII+EPV G GF F+ A+R + ++G LLI DEV T
Sbjct: 183 LAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT 242
Query: 228 GF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 286
GF R A E+ V DLTT+ K + GG P+ A GR +IM+ P G GT G
Sbjct: 243 GFARTGKLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGG---LGGTYGG 299
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319
NPL + A L ++E E N++ L Q
Sbjct: 300 NPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQ 332
|
Length = 425 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 7e-41
Identities = 98/296 (33%), Positives = 149/296 (50%), Gaps = 25/296 (8%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
IVF KGS ++D +G Y+D++ W +GH + ++ AL +K + +P
Sbjct: 19 DIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLIN-PSPAFYN 77
Query: 79 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGH 131
+A++ +++ + V F NSG EA G ++LAR + G II F+ +HG
Sbjct: 78 EPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGR 137
Query: 132 ADPFLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190
+ +G G T+ P PG PK A ND++++E L + + A++LE
Sbjct: 138 TLATMSASGKPGWDTIFAPQVPGFPK--------AELNDIASVEKLITD---KTVAVMLE 186
Query: 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 249
PV G G I +F+ +R +TK++G LLI DEV TG R A E G+ PD+ TL
Sbjct: 187 PVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTL 246
Query: 250 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
GK IGGG+P+ A + VA Q GT +GNPL G+ + +L PG
Sbjct: 247 GKGIGGGVPLAALLAK----AEVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPG 298
|
Length = 395 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-40
Identities = 90/328 (27%), Positives = 127/328 (38%), Gaps = 54/328 (16%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 72
P V +G ++ DIDG Y+D + GH ++ A+ + + K G
Sbjct: 27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTH 86
Query: 73 APCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAF------TGRERIIKF 124
P + LAE + P + V F +SG+EA L++A + R++ I
Sbjct: 87 EPAIE---LAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISR 143
Query: 125 EGCYHGHADPFLVKAGSGVATLGLPDSPG---------------------VPKGATYETL 163
YHG + + + +G E
Sbjct: 144 RNGYHG----------DTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGD 193
Query: 164 TAPFNDVSALENLFE-NNKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLI 221
LE L + IAA I+EPVVG G + P P +L +R I + G LLI
Sbjct: 194 EEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLI 253
Query: 222 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIME--MVAPAGP 277
DEV TGF R A E+ G+ PD+ L K + GG LP+ A I E AG
Sbjct: 254 ADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGA 313
Query: 278 MYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
T SGNPLA A + L L+E
Sbjct: 314 FMHGHTYSGNPLACAAALANLDILEEED 341
|
Length = 449 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 44/315 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+V D G+ + D+DG YID + S +GHA +V+ A+ K + P +
Sbjct: 25 PLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHY-TPAYMY 83
Query: 79 NV----LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-- 130
+ LA+ + P + V F SG++A G+++ ARA+TGR II F YHG
Sbjct: 84 HEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143
Query: 131 ---------------HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVS 171
P L G + PD P E AP +
Sbjct: 144 YGSLSMSGISLNMRRKYGPLL----PGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE-- 197
Query: 172 ALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+FE E+A I++E + G+ G + P P + A+ + +E+G L D++ G
Sbjct: 198 ----MFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGL 253
Query: 230 -RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288
R + +F +TPDL + GK + GG+P+ A GR++IME + ++ T NP
Sbjct: 254 GRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLF---TTGANP 310
Query: 289 LAMTAGIHTLKRLKE 303
++ A + T+ +++
Sbjct: 311 VSCAAALATIDMIED 325
|
Length = 445 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-39
Identities = 105/297 (35%), Positives = 159/297 (53%), Gaps = 23/297 (7%)
Query: 23 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLEN 79
+ + + +WD++G EYID+ GH +V+AA+ + + + T P
Sbjct: 27 ERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYV 86
Query: 80 VLAEMVISAVPSIE---MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136
LAE + + P I+ F +G EA +++ARA+TGR +I F G +HG L
Sbjct: 87 TLAERINALAP-IDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT--LL 143
Query: 137 VKAGSG-VA--TLGLPDSPGVPKGATYETL---TAPFNDVSALENLFENNKG--EIAAII 188
A +G VA +G PG A Y + +S++E LF+ + ++AAI+
Sbjct: 144 TMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAIL 203
Query: 189 LEPVVGNSGF-IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246
LEP+ G GF +AP P+F++A+R + E+G LLI DEV TGF R A EY+ V PDL
Sbjct: 204 LEPIQGEGGFNVAP-PEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262
Query: 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
T+ K +GGG+P+ A GR ++M+ AP G GT +GNPLA+ A + L + E
Sbjct: 263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGG---LGGTYAGNPLAVAAALAVLDVIAE 316
|
Length = 421 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 5e-39
Identities = 100/314 (31%), Positives = 143/314 (45%), Gaps = 27/314 (8%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 74
+ F+ +G + D DG Y+D+ +GHA ++ AL E +K S + P
Sbjct: 14 DLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIP 73
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 128
+ LAE ++ + + V F NSG EA ++ AR + R RII FEG +
Sbjct: 74 --EQERLAERLVENSFA-DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAF 130
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188
HG + G G P VP G PF D+ AL+ N AAI+
Sbjct: 131 HGRTLATIAAGGQEKYLEGF--GPLVP-GFDQ----VPFGDIEALKAAITPN---TAAIL 180
Query: 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247
+EP+ G G +FL +R++ ENG LLIFDEV G R A E+ GVTPD+
Sbjct: 181 IEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIM 240
Query: 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307
+ K IGGG P+GA + + + P T GNPLAM G L + PG
Sbjct: 241 AVAKGIGGGFPLGACLATEEAAKGMTPGT---HGSTYGGNPLAMAVGNAVLDVILAPGFL 297
Query: 308 EYLNKITGELTQGI 321
+ + ++ L Q +
Sbjct: 298 DNVQRMGLYLKQKL 311
|
Length = 389 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 8e-38
Identities = 96/315 (30%), Positives = 149/315 (47%), Gaps = 31/315 (9%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 74
P+VF KGS +WD +G +Y+D++ ++ GH +++ AL E +K T +F
Sbjct: 58 PVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYND 117
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE---------RIIKFE 125
AE + S +MV +N+G E ++LAR + G E I+
Sbjct: 118 KF--PEFAEYLTSMF-GYDMVLPMNTGAEGVETAIKLARKW-GYEKKGIPKNEAIIVSCC 173
Query: 126 GCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184
GC+HG + + AT G P PG K F D+ ALE +FE + I
Sbjct: 174 GCFHGRTLAAISMSCDNEATRGFGPLLPGHLK--------VDFGDLDALEKIFEEDGDRI 225
Query: 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 243
AA + EP+ G +G + P +L A+R + ++ L+I DE+ TG R A ++ V
Sbjct: 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVR 285
Query: 244 PDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 302
PD+ LGK +GGG +PV A +D+M + P T GNPLA + L+ ++
Sbjct: 286 PDVVILGKALGGGVIPVSAVLADKDVMLCI---KPGEHGSTFGGNPLASAVAMAALQVVQ 342
Query: 303 EPGTYEYLNKITGEL 317
+ E K+ EL
Sbjct: 343 DEKLAERSAKLGQEL 357
|
Length = 474 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-37
Identities = 104/348 (29%), Positives = 154/348 (44%), Gaps = 61/348 (17%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ + +G +++D DG EYID + SW I GH ++ AA+ E + K LE
Sbjct: 14 PLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDK---------LE 64
Query: 79 NV------------LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRE 119
+V LAE ++ P +E V F +SG+ A L++A + G+
Sbjct: 65 HVMFGGLTHEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKT 124
Query: 120 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG---VPKGATYETLTAPFNDV------ 170
R + F YHG D F + + D G + + +E + P
Sbjct: 125 RFLAFRNGYHG--DTF--------GAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDP 174
Query: 171 --------SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLI 221
+ALE L E + EIAA I+EP+V G G P++L +R + E G LLI
Sbjct: 175 DDCEAECLAALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLI 234
Query: 222 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAG 276
DE+ TGF R A E+ GVTPD+ L K + GG LP+ A +I E
Sbjct: 235 ADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGK 294
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324
T +GNPLA A + +L L+E E + +I +L G+
Sbjct: 295 AFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPL 342
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 28 SHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENVLAEMV 85
+ + D G E+ID +G +G +GH + V++A+ + K L L +LA+ +
Sbjct: 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTL 133
Query: 86 ISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGS 141
+ P ++ F NSGTE+ L+LA+A+ G+ I G +HG + L + +
Sbjct: 134 AALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGAL--SAT 191
Query: 142 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GE-IAAIILEPVVGNSGF 198
+T P P +P PF ++ A+ K G+ +AA+ILEP+ G G
Sbjct: 192 AKSTFRKPFMPLLP-----GFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGV 246
Query: 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG- 256
I P +L A+R++ E GALLI DEV TG R A E+ V PD+ L K +GGG
Sbjct: 247 ILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGV 306
Query: 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
+P+GA ++ ++ P T GNPLA A + T+ L E
Sbjct: 307 MPIGATIATEEVFSVLFD-NPFLHTTTFGGNPLACAAALATINVLLE 352
|
Length = 459 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-36
Identities = 94/282 (33%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL--AE 83
+GS +WD G EYID+ G +GHA + AL E K G E VL A+
Sbjct: 29 EGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAK 88
Query: 84 MVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLV 137
+I A + + V F NSG EA L+LAR + + + I+ F+ +HG F V
Sbjct: 89 KLIDATFA-DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRT-LFTV 146
Query: 138 KAGSGVATLGLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193
AG G P D +P + A +ND+++ L ++ A+I+EP+
Sbjct: 147 SAG------GQPKYSQDFAPLPPDIRH----AAYNDLNSASALIDDQT---CAVIVEPIQ 193
Query: 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 252
G G I FL +R + + ALLIFDEV TG R A ++GVTPD+ T K
Sbjct: 194 GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKA 253
Query: 253 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 290
+GGG P+GA M + G T GNPLA
Sbjct: 254 LGGGFPIGA-------MLTTEKCASVMTVGTHGTTYGGNPLA 288
|
Length = 406 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-36
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 30/335 (8%)
Query: 13 KSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF 71
VG P+ +G+ + D+DGN ID+ IGH+ +V+ A+ + + T
Sbjct: 9 SGVGVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHT 68
Query: 72 G---APCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKFEG 126
P LAE + P + F NSG EA +++AR++TGR ++ F+
Sbjct: 69 CFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDH 128
Query: 127 CYHGHAD----------PFLVKAGSGV---ATLGLPDSPGVPKGATYETLTAPFNDV-SA 172
+HG + P+ K+G G P G + L+ + +A
Sbjct: 129 GFHGRTNMTMALTAKVMPY--KSGFGPFAPEVYRAPLPYPYRDGLLDKQLS--TDGELAA 184
Query: 173 LENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229
+F + G +AA+++EPV G GFI P F+ A+ +E+G + I DEV TGF
Sbjct: 185 ARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFA 244
Query: 230 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 289
R A E+ G PDL T K + GLP+ GR +IM+ AP G GT +GNPL
Sbjct: 245 RTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGG---LGGTYAGNPL 301
Query: 290 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324
A A + L ++ G E +I +T +
Sbjct: 302 ACAAALAVLAIIESEGLIERARQIGRLVTDRLTTL 336
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 1e-35
Identities = 94/286 (32%), Positives = 135/286 (47%), Gaps = 32/286 (11%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMV 85
+G ++WD G Y+D + G ++GH + + + E ++K G P EM+
Sbjct: 14 EGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAG-PMFEHEEKEEML 72
Query: 86 --ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 143
+S + E V NSGTEA L+ AR +TGR+ II +HG
Sbjct: 73 EELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGR------------ 120
Query: 144 ATLGLPDSPGVPK-GATYETLTA-----PFNDVSALENLFENNKGEIAAIILEPVVGNSG 197
T+G + PK +E L PFNDV A + E E AA+I EP+ G G
Sbjct: 121 -TMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAK---EAITKETAAVIFEPIQGEGG 176
Query: 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGL 257
+ K +F+ +R +T++ GALLI DEV +G R A E++ V PD+ T+GK IG G+
Sbjct: 177 IVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGNGV 236
Query: 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
PV D+ G T GNPLA A TL+ L+
Sbjct: 237 PVSLTLTNFDV-----ERGK--HGSTFGGNPLACKAVAVTLRILRR 275
|
Length = 364 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 5e-35
Identities = 96/286 (33%), Positives = 134/286 (46%), Gaps = 47/286 (16%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENV--- 80
+GS +WD G EYID+ G +GH ++ AL E +K L + NV
Sbjct: 30 EGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEK--------LWHISNVFTN 81
Query: 81 -----LAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR--AFT----GRERIIKFEGCYH 129
LA+ +I A + E V F NSG EA +LAR A + II F +H
Sbjct: 82 EPALRLAKKLIDATFA-ERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFH 140
Query: 130 GHADPFLVKAGSGVATLGLPD-SPG---VPKGATYETLTAPFNDVSALENLFENNKGEIA 185
G F V G G P S G P T+ PFND++A++ + +++
Sbjct: 141 GRT-LFTVSVG------GQPKYSDGFGPKPADITH----VPFNDLAAVKAVIDDHT---C 186
Query: 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244
A+++EP+ G G I P+FL +R + ++ ALLIFDEV TG R A ++GVTP
Sbjct: 187 AVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTP 246
Query: 245 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
D+ T K +GGG P+GA +I T GNPLA
Sbjct: 247 DILTSAKALGGGFPIGAMLTTAEIASHFKVG---THGSTYGGNPLA 289
|
Length = 403 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-34
Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 33/302 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 74
P+VF +G H+WD++G Y+D++ ++ GH +++ AL E +K T +F
Sbjct: 20 PVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYND 79
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 126
E AE V + + V +N+G EA ++LAR + + I+ +G
Sbjct: 80 VFGE--FAEYVTK-LFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKG 136
Query: 127 CYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185
+HG + + + P PG K P+N++ ALE E++ +
Sbjct: 137 NFHGRTLGAISMSTDPDSRTNFGPYVPGFKK--------IPYNNLEALEEALEDHGPNVC 188
Query: 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGV 242
A I+EP+ G +G + P +L +R + ++ LLI DE+ TG L G ++ V
Sbjct: 189 AFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG--LGRTGKLLCVDHENV 246
Query: 243 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301
PD+ LGK + GG PV A D+M + P T GNPLA + L+ L
Sbjct: 247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGE---HGSTYGGNPLACAVAVAALEVL 303
Query: 302 KE 303
+E
Sbjct: 304 EE 305
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 3e-34
Identities = 94/285 (32%), Positives = 134/285 (47%), Gaps = 31/285 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P + +GS +WD G EYID+ G +GHA +++ AL E K G E
Sbjct: 18 PFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNE 77
Query: 79 NV--LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHG 130
V LA+ ++ A + + V F NSG EA L+LAR + + I+ F+ +HG
Sbjct: 78 PVLRLAKKLVDATFA-DKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHG 136
Query: 131 HADPFLVKAGSGVATLGLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186
F V G G P +P G + AP+ND++A + L + A
Sbjct: 137 RT-LFTVSVG------GQPKYSQGFAPLPGGIKH----APYNDLAAAKALISDKT---CA 182
Query: 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245
+I+EP+ G G + P FL +R + + ALLIFDEV TG R A ++GVTPD
Sbjct: 183 VIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 242
Query: 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
+ T K +GGG P+GA +I + T GNPLA
Sbjct: 243 ILTSAKALGGGFPIGAMLTTTEIAAHLKVGT---HGTTYGGNPLA 284
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-34
Identities = 109/338 (32%), Positives = 164/338 (48%), Gaps = 50/338 (14%)
Query: 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGA- 73
G P S G+ + D+DGN+YID+ G+ G +GH+ +V AL + + + T F
Sbjct: 35 GIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVM 94
Query: 74 --PCLLENVLAEMVISAVPSI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129
+E LAE + + P + V F+NSG EA +++AR +T R+ II F +H
Sbjct: 95 MYEPYIE--LAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFH 152
Query: 130 GHAD----------PFLVKAGSGVATLGLPDSPGV-----------PKGATYETLTAPFN 168
G P+ K G G P +P V P+G T E
Sbjct: 153 GRTLMTMTMTSKVKPY--KFGFG------PFAPEVYKAPFPYEYRRPEGLTEEQYDDFM- 203
Query: 169 DVSALENLF--ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226
+ +N F E IAA+++EPV G GFI P F+ +R I E+G L + DE+
Sbjct: 204 -IEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQ 262
Query: 227 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 285
TGF R A E+F V PDL T+ K +G G+P+ GR++IM+ AP G + GT +
Sbjct: 263 TGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAP-GEL--GGTYA 319
Query: 286 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 323
G+PL A + L +++ E LN EL + +++
Sbjct: 320 GSPLGCAAALAVLDIIEK----ENLNDRAIELGKVVMN 353
|
Length = 451 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 9e-34
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 31/320 (9%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
S VR++ P F +G + D++G EY+D++ G +GH + + + ++
Sbjct: 12 SNVRSY--PRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQ 69
Query: 67 KGT---SFGAPCLLENVLAEMVISAVPSIEM---VRFVN-SGTEACMGVLRLARAFTGRE 119
G + L++ E +++ +P +M ++F SG +A ++LA+ +TGR
Sbjct: 70 SGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRT 129
Query: 120 RIIKFEGCYHGHADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLTAPF 167
+I F G +HG L G GV + P P G E +
Sbjct: 130 NVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN-- 187
Query: 168 NDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224
+ EN E+ + + AA+ILE + G G +A ++L IR +T+++ LI DE
Sbjct: 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDE 247
Query: 225 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 283
V GF R A E+ G+ PD + K +GGGLP+ + + PAG GT
Sbjct: 248 VQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAG---HTGT 303
Query: 284 LSGNPLAMTAGIHTLKRLKE 303
GN LAM G L K+
Sbjct: 304 FRGNQLAMVTGTEALNYWKD 323
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 4e-33
Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 21/316 (6%)
Query: 24 SVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENV 80
S + + + D++GNEYID+ GH ++AA+ + +++ T P
Sbjct: 28 SAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVT 87
Query: 81 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 138
LAE + + P F +G EA +++ARA TGR +I F G +HG ++
Sbjct: 88 LAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT--YMTM 145
Query: 139 AGSG-VA--TLGLPDSPG----VPKGATYETLTAPFNDVSALENLFENN--KGEIAAIIL 189
A +G VA +G PG VP + ++ + + A+E LF+++ ++AAII
Sbjct: 146 ALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQ-DSLDAIERLFKSDIEAKQVAAIIF 204
Query: 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248
EPV G GF + + AIRR+ E+G ++I DEV +GF R A +++ PDL T
Sbjct: 205 EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMT 264
Query: 249 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
+ K + GG+P+ G +IM+ AP G GT +GNPLA+ A L + + E
Sbjct: 265 MAKSLAGGMPLSGVVGNANIMDAPAPGG---LGGTYAGNPLAVAAAHAVLNIIDKESLCE 321
Query: 309 YLNKITGELTQGIIDA 324
N++ L +IDA
Sbjct: 322 RANQLGQRLKNTLIDA 337
|
Length = 421 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 98/350 (28%), Positives = 142/350 (40%), Gaps = 79/350 (22%)
Query: 22 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL 81
F S KG ++D++G EY+D +GH D + A+ E L
Sbjct: 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQ-------------AGTL 47
Query: 82 AEM--VISAVPSIEMVR------------FVNSGTEACMGVLRLARAFTGRER------- 120
A + V +P +E+ + F NSGTEA ++ AR + R R
Sbjct: 48 AHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQ-RVRAPDKKDP 106
Query: 121 -------IIKFEGCYHGHADPFLVKAGSGVATLG-----------LPDSPGVPKGATYET 162
+ F +HG TLG P P +P G T+
Sbjct: 107 AASSATEFVSFSNSFHGR-------------TLGALALTSKEQYRTPFEPLMP-GVTF-- 150
Query: 163 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222
+ ++ A L + KG+ AA+ +EPV G G +FL +R + E GALL+F
Sbjct: 151 --VEYGNLEAARKLIQ--KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVF 206
Query: 223 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA-GPMYQ 280
DEV G R Y A E +GV PD+ TL K + GGLP+GA + E VA A P
Sbjct: 207 DEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGLPIGAV----LVTEKVASAINPGDH 262
Query: 281 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 330
T +G PL A + L ++ +PG + K L + + H
Sbjct: 263 GSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPH 312
|
Length = 382 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 21/291 (7%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
I F +G+++ D DG +Y+D+ G +G QV AL + G + +P L
Sbjct: 12 AIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQAL--QKQAGLIWHSPNLYL 68
Query: 79 NVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136
N L E V + + + F NSG EA +++AR TG++ II F+ +HG +
Sbjct: 69 NSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSM 128
Query: 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196
G G GVP +Y A FND+++++ L N AA++LE V G S
Sbjct: 129 SATGQDKIKDGF--GDGVP-HFSY----AIFNDLNSVKALVNKNT---AAVMLELVQGES 178
Query: 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 255
G + DF+ A+ +E G LLI DEV TG R A E++G+ PD+ TL K +
Sbjct: 179 GVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLAN 238
Query: 256 GLPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
G+PVGA + + A G T GN L+M A TL + G
Sbjct: 239 GVPVGAMLAKSSL----GGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAG 285
|
Length = 375 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 95/283 (33%), Positives = 136/283 (48%), Gaps = 19/283 (6%)
Query: 32 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENVLAEMVISAV 89
D GNE+ID +G +G +GH + V+AA+ + K L L +LA+ + +
Sbjct: 71 DTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALT 130
Query: 90 P-SIEMVRFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGSGVAT 145
P ++ F NSGTE+ L+LA+A+ G+ I G +HG + L + +
Sbjct: 131 PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGAL--SATAKPA 188
Query: 146 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPK 202
P P +P G + F D+ A+ K ++AAIILEP+ G G I P
Sbjct: 189 FRKPFMPLLP-GFHH----VAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPP 243
Query: 203 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 260
+L A+R + E GALLI DEV TG R A E+ GV PD+ L K +GGG +P+G
Sbjct: 244 EGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIG 303
Query: 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
A + V P T GNPLA A + T+ L E
Sbjct: 304 ATIATEAVFS-VLFDNPFLHTTTFGGNPLACAAALATINELLE 345
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-31
Identities = 97/319 (30%), Positives = 140/319 (43%), Gaps = 43/319 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC--- 75
P+V +GS++WD +G Y+D+ IGH +V+AA+ E + + AP
Sbjct: 36 PMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTV-APAHAN 94
Query: 76 LLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 134
+ A ++ P + V F N G +A +R+AR TGR +++ YHG
Sbjct: 95 DARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHG---- 150
Query: 135 FLVKAGSGVATLG----LPDSPGVPKGATYETLTAPFNDVS-------------ALENL- 176
GS + G P+ G + PF S AL +L
Sbjct: 151 ---GTGSAINLTGDPRRWPNDTGRAGVVHF---FGPFLYRSEFHATTEEEECERALAHLE 204
Query: 177 ----FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
E IAAI+LE V G +G + P P +L +R + +G +LI DEVM GF R
Sbjct: 205 RVIELEG-PSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRT 263
Query: 232 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPL 289
A E+FGV PDL T K + G +P+G I A Y G T SG+PL
Sbjct: 264 GKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR--PYPGGLTYSGHPL 321
Query: 290 AMTAGIHTLKRLKEPGTYE 308
A A + T+ ++E G E
Sbjct: 322 ACAAAVATINAMEEEGIVE 340
|
Length = 451 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 2e-30
Identities = 96/312 (30%), Positives = 145/312 (46%), Gaps = 37/312 (11%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 76
P+ +G + D++GN+Y+D + G +GH VL ++ + + G L
Sbjct: 41 PLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTT 100
Query: 77 -LENVLAEMVISAVPSIE---MVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
L++ +E ++S +P ++F SG +A ++LA+ +TGR +I F G YHG
Sbjct: 101 PLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGM 160
Query: 132 ADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179
L G GV + P P G E V AL FEN
Sbjct: 161 THGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEA------GVKALTYYFEN 214
Query: 180 NKGEI-------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
++ AA+ILE + G G ++L IR +T+++G LLI DEV GF R
Sbjct: 215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFART 274
Query: 232 AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 291
A E+ G+ PD+ + K +GGGLP+ G +++ + P G GT GN LAM
Sbjct: 275 GKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKE-FDAWQPGG---HTGTFRGNQLAM 330
Query: 292 TAGIHTLKRLKE 303
G+ TLK LKE
Sbjct: 331 ATGLTTLKILKE 342
|
Length = 459 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-30
Identities = 110/352 (31%), Positives = 158/352 (44%), Gaps = 66/352 (18%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG----PAIIGHADDQ 56
MP N R FK+ P + S +G + D DG + +D G+ G A GH +
Sbjct: 20 MPFTAN---RQFKA---APRLLVSAEGMYYTDADGRKILD--GTAGLWCCNA--GHGRPE 69
Query: 57 VLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLR 110
++ A+ G P E LAE + P ++ V F NSG+E+ L+
Sbjct: 70 IVEAVARQAATLDYAPAFQMGHPLAFE--LAERLAELAPGGLDHVFFTNSGSESVDTALK 127
Query: 111 LARAF------TGRERIIKFEGCYHG-------------HADPFLVKAGSGV----ATLG 147
+A A+ R R+I E YHG + F GV TL
Sbjct: 128 IALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGG-LLPGVDHLPHTLD 186
Query: 148 LPD---SPGVPK-GATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPK 202
LP+ S G P+ GA D LE L + IAA+I+EP+ G++G + P
Sbjct: 187 LPENAFSKGQPEHGAE-------LAD--DLERLVALHDASTIAAVIVEPMAGSAGVLVPP 237
Query: 203 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVG 260
+L +R I ++G LLIFDEV+TGF RL A E FGVTPD+ T K + G +P+G
Sbjct: 238 KGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMG 297
Query: 261 AYGGRRDIME--MVAPAGPM--YQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
A +I + M P + + T S +P+A AG+ TL +E +E
Sbjct: 298 AVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFE 349
|
Length = 445 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 99/307 (32%), Positives = 147/307 (47%), Gaps = 56/307 (18%)
Query: 32 DIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKGTSFGAPCLLEN------VLAE 83
D+DGN ID GS G A+ +G++ +V+ A+ E + + F C + +AE
Sbjct: 52 DVDGNRLIDL-GS-GIAVTSVGNSAPRVVEAVREQVAR---FTHTCFMVTPYEGYVAVAE 106
Query: 84 MVISAVPSIEMVRFV--NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD-------- 133
+ P R NSG EA +++AR++TGR+ ++ F+ YHG +
Sbjct: 107 QLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAK 166
Query: 134 --PFLVKAGSGVATLGLPDSPGVPKGATYET-LTAPFNDVSALEN-----------LFEN 179
P+ K+G G P +P V Y ++ P+ D L + E
Sbjct: 167 SMPY--KSGFG------PFAPEV-----YRAPMSYPYRDPKGLATDGEEAAARAITVIEK 213
Query: 180 NKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236
G +AA+I+EP+ G GFI P FL A+ +ENG + I DEV TGF R A
Sbjct: 214 QVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFA 273
Query: 237 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 296
E+ G+ PDL T K I GGLP+ A GR +IM+ P G GT GNP+A A +
Sbjct: 274 CEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGG---LGGTYGGNPVACAAALA 330
Query: 297 TLKRLKE 303
++ ++E
Sbjct: 331 AIETIEE 337
|
Length = 443 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 3e-28
Identities = 102/321 (31%), Positives = 143/321 (44%), Gaps = 40/321 (12%)
Query: 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS---FGAP 74
+V + +GS +WD G EY+D +GH D ++AAL E K TS + AP
Sbjct: 24 VVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAP 83
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR---AFTGR----ERIIKFEGC 127
L LAE +++A E V NSGTEA ++L R + GR I+ F G
Sbjct: 84 PLK---LAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGS 140
Query: 128 YHGHADPFLVKAGSGVATLGLPDSPGVPK-GATYETLTA-----PFNDVSALENLFENNK 181
+HG TL + PK YE L FNDV ALE
Sbjct: 141 FHGR-------------TLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAG-- 185
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240
G++AA++LEP+ G G + P FL +R + ++ ALL+ DE+ G R A
Sbjct: 186 GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQE 245
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
VTPD+ TL K +GGG P+GA + E + T GNPLA L++
Sbjct: 246 QVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGA---HGTTFGGNPLAAAVARVALRK 302
Query: 301 LKEPGTYEYLNKITGELTQGI 321
L P + + + L G+
Sbjct: 303 LASPQIAANVARQSAALRAGL 323
|
Length = 408 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 95/330 (28%), Positives = 139/330 (42%), Gaps = 72/330 (21%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--------TS 70
P+ +G ++ D++G ++ID + G +GH V+ A+ + + T+
Sbjct: 46 PLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTT 105
Query: 71 ----------FGAPCLLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAFTGRE 119
F L E E I +F +GT+A L+L + TGR
Sbjct: 106 PVKDQFVQDLFA--SLPEAFAREAKI---------QFCGPTGTDAVEAALKLVKTATGRS 154
Query: 120 RIIKFEGCYHGHADPFLVKAGS------------GVATL----------GLPDSPGVPKG 157
++ F+G YHG + L G+ GV L GL GV
Sbjct: 155 TVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN 214
Query: 158 ATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITK 214
Y LENL ++ + + AA+ILE V G G I ++L +RRIT+
Sbjct: 215 LHY------------LENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE 262
Query: 215 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 273
E G LI DE+ +GF R A E+ G+ PD+ L K IGG LP+ R +
Sbjct: 263 EAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWLDTW-- 320
Query: 274 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
P AGT GN +AM AG TL+ +KE
Sbjct: 321 --QPGAHAGTFRGNQMAMAAGSATLRYIKE 348
|
Length = 464 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-27
Identities = 98/322 (30%), Positives = 138/322 (42%), Gaps = 68/322 (21%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
PI +G++++ DG E ID + SW A GH + A+ E + + L+
Sbjct: 25 PIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDR---------LD 75
Query: 79 NV------------LAEMVISAVP-SIEMVRFVNSGTEA-------CMGVLRLARAFTGR 118
+V LA+ +++ P ++ V F +SG+ A + R R GR
Sbjct: 76 HVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRN-RGEPGR 134
Query: 119 ERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYET 162
R + G YHG HA P L + T P P G T
Sbjct: 135 SRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFE----QVTAPFP-----PDGYEQAT 185
Query: 163 LTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLI 221
L ALE L E + GEIAA I+EP+V G G + P +L +RRI +G LLI
Sbjct: 186 L-------DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLI 238
Query: 222 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAG 276
FDE+ TGF R A E GV+PD+ L K + GG LP+ A +I E A
Sbjct: 239 FDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAK 298
Query: 277 PMYQAGTLSGNPLAMTAGIHTL 298
+ + + NPLA A +L
Sbjct: 299 AFMHSPSYTANPLACAAANASL 320
|
Length = 423 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 102/346 (29%), Positives = 148/346 (42%), Gaps = 54/346 (15%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MP N R FK P + + KG + DG +D GH +++ A
Sbjct: 17 MPFTAN---RQFKK---APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEA 70
Query: 61 LGE---TMKKGTSFG----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113
+ + +F L N +AE+ A + V F NSG+E+ L++A
Sbjct: 71 VRAQAGELDYAPAFQMGHPKAFELANRIAEI---APGGLNHVFFTNSGSESVDTALKIAL 127
Query: 114 AF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLG---------LPDSPGVPKGA 158
A+ R R+I E YHG + G V + LP +P
Sbjct: 128 AYHRARGEGSRTRLIGRERGYHG-----VGFGGISVGGIVPNRKAFGALLPGVDHLPH-- 180
Query: 159 TYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208
T + F+ LE L ++ IAA+I+EPV G++G + P +L
Sbjct: 181 TLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQR 240
Query: 209 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRR 266
+R I ++G LLIFDEV+TGF RL A +YFGVTPDL T K + G +P+GA
Sbjct: 241 LREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSS 300
Query: 267 DIMEMV---APAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 308
+I + AG + G T SG+PLA A + TL + G
Sbjct: 301 EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLT 346
|
Length = 442 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 86/298 (28%), Positives = 131/298 (43%), Gaps = 28/298 (9%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
PIV +G + D +GN Y+D + ++ GH +++ AL + K T +
Sbjct: 23 PIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVT-LTSRAFHS 81
Query: 79 NVLAEMV--ISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCY 128
+ L ++ + +MV +N+G EA ++ AR + + II EG +
Sbjct: 82 DQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNF 141
Query: 129 HGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187
HG + + G P PG+ K P+ D+ AL+ N AA
Sbjct: 142 HGRTMAAVSLSSEEEYKRGFGPMLPGIKK--------IPYGDLEALKAAITPNT---AAF 190
Query: 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246
++EP+ G +G P FL A R + KE L I DE+ TG R A ++ VTPD+
Sbjct: 191 LVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDM 250
Query: 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
LGK +GGG P+ RDI+ + P T GNPLA I L+ L+E
Sbjct: 251 YILGKALGGGVFPISCVAANRDILGVFTPGS---HGSTFGGNPLACAVSIAALEVLEE 305
|
Length = 396 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 93/331 (28%), Positives = 135/331 (40%), Gaps = 58/331 (17%)
Query: 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK----GTS 70
V + +G ++ D G Y+D S G A+ +GH+ +V+AA+ + + TS
Sbjct: 11 ATLPVAVAGEGIYLIDATGKRYLD--ASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS 68
Query: 71 FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIK 123
F E LA+ +++A P +E V FV+ G+EA L+LAR + R I
Sbjct: 69 FFTTEPAE-ALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIA 127
Query: 124 FEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182
YHG+ TLG L + + L + VS E G
Sbjct: 128 RRQSYHGN-------------TLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAG 174
Query: 183 E------------------------IAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENG 217
E +AA + E VVG +G + P P + IR + G
Sbjct: 175 ESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYG 234
Query: 218 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 275
LLI DEVM G R A E GV PDL T+ K +G G P+GA I + +A
Sbjct: 235 VLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADG 294
Query: 276 GPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 305
+Q G T G+ A A + + + E G
Sbjct: 295 SGFFQHGHTYLGHATACAAALAVQRVIAEDG 325
|
Length = 443 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 4e-22
Identities = 93/335 (27%), Positives = 137/335 (40%), Gaps = 72/335 (21%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGP--AIIGHADDQVLAALGETMKK--------GTSFGAPC 75
KG +++D +GN+Y D GS G A IGH ++ A+ E ++ TS A
Sbjct: 21 KGVYLYDQNGNKYFD--GSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPA-- 76
Query: 76 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYH 129
E + ++ + + FVNSG+EA +++A R G+ +I+ YH
Sbjct: 77 --EKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYH 134
Query: 130 GHADPFLVKAGSGVATLG-----------------LPDSPGVPKGATY---ETLTAPFND 169
G T+G L D P + Y P
Sbjct: 135 G-------------ITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQ 181
Query: 170 VSA---LENLFENNKGE-IAAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDE 224
++ LE E E IAA I EP++G +G + P + I+ I L I DE
Sbjct: 182 LACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADE 241
Query: 225 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG 282
VMTG R A E++GV PD+ TLGK +G G P+ A +ME + +G
Sbjct: 242 VMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSG 301
Query: 283 -TLSGNPLAMTAGI--------HTL-KRLKEPGTY 307
TLS NPL+ + H L ++ E G Y
Sbjct: 302 HTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEY 336
|
Length = 447 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 87/354 (24%), Positives = 138/354 (38%), Gaps = 64/354 (18%)
Query: 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 64
V S R+F P VF+ KGS +WD DG EYID+ G GH + ++ AL +
Sbjct: 10 VRSYCRSF------PTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDY 63
Query: 65 MKKGTSFGAPCLLENVLAEMVISAVPSIE-MVRFVNS-----------------GTEACM 106
+ + ++ + ++ E + F GT A
Sbjct: 64 LAD----------DGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVE 113
Query: 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV--ATLGLPDSPGVPKGATYET-L 163
L+LAR TGR ++ F +HG L G+ G+P S Y+ L
Sbjct: 114 SALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSR--MPYDGYL 171
Query: 164 TAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 220
+ ++ E L E++ + AA+ILE V G G ++L + ++ + + LL
Sbjct: 172 GGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILL 231
Query: 221 IFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAP 274
I D++ G G +F G+ PD+ L K I G GLP+ + ++ P
Sbjct: 232 IVDDIQAG----CGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLA--------LTLIKP 279
Query: 275 A----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324
P GT GN LA L+ +E + E+ Q +D
Sbjct: 280 ELDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDR 333
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 6e-21
Identities = 103/351 (29%), Positives = 160/351 (45%), Gaps = 50/351 (14%)
Query: 11 AFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV-GSWGPAIIGHADDQVLAALGETMKKGT 69
++S +P+V + +GS+++DI+G +Y+D + G W A+ G ++ +++AA E + K
Sbjct: 64 GWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTAL-GGSEPRLVAAATEQLNKLP 122
Query: 70 ---SF----GAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAFT---G 117
SF P L LA+ ++ + +M V F NSG+EA ++L + G
Sbjct: 123 FYHSFWNRTTKPSL---DLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALG 179
Query: 118 RE---RIIKFEGCYHGHADPFLVKAG-SGVATL----GLP-------DSP-----GVPKG 157
R + I YHG L+ A SG+ L LP D P +P G
Sbjct: 180 RPNKKKFIARSKSYHGST---LISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLP-G 235
Query: 158 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216
T E + D LENL E IAA I EPV+G G I P + I+ + K+
Sbjct: 236 ETEEEFSTRLAD--NLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY 293
Query: 217 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 274
L I DEV+ F RL + + + PDL +L K + +P+GA +I +++
Sbjct: 294 DILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHS 353
Query: 275 A----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
G T SG+P++ + LK KE E++NKI GI
Sbjct: 354 QSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGI 404
|
Length = 504 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 1e-20
Identities = 80/313 (25%), Positives = 143/313 (45%), Gaps = 37/313 (11%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 72
P+V G+ + D+DGN +ID++ A G++ +++ A+ E + G +
Sbjct: 36 PLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHS 95
Query: 73 APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130
+ +AE + P IE V F SG++A +++++ T R I+ F G YHG
Sbjct: 96 ERAIR---VAEKLAEISP-IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHG 151
Query: 131 HA------DPFLVKAGSGVATLGLPDSPGVPKGATYETL------TAPFNDVSALENLFE 178
F G + L +P+ +P Y P ++ + E
Sbjct: 152 QTLGATSVAAFQSSQKRGFSPL-MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLE 210
Query: 179 N-------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 230
N E+AA+ EP+ G++G + P +F ++++ E+G LL+ DEV TG R
Sbjct: 211 NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGR 270
Query: 231 LAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
A E+F V PDL GK + G+ + GR+++M++ + + + T + NP+
Sbjct: 271 TGKWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDLTSGSALL----TPAANPVI 326
Query: 291 MTAGIHTLKRLKE 303
A TL+ ++E
Sbjct: 327 SAAAEATLEIIEE 339
|
Length = 457 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-20
Identities = 90/317 (28%), Positives = 132/317 (41%), Gaps = 56/317 (17%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFG-- 72
+V +G +WD DGN Y+D + ++ GH ++LAA+ E + T +F
Sbjct: 24 DVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRND 83
Query: 73 --APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERII 122
AP E ++A+ V +NSG EA ++ R + G+ II
Sbjct: 84 QLAPLYEE-------LAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEII 136
Query: 123 KFEGCYHGH--------ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174
+HG DP + G G P +PG PF D ALE
Sbjct: 137 VCADNFHGRTLSIVGFSTDP-DARGGFG------PFTPGFR--------VVPFGDAEALE 181
Query: 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233
N A ++EP+ G +G I P + +R + N LI DE+ TG R
Sbjct: 182 AAITPNT---VAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK 238
Query: 234 GGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAM 291
A+E+ G+ D+T +GK + GG PV A +++ ++ P Q G T GNPLA
Sbjct: 239 LLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPG----QHGSTFGGNPLAC 294
Query: 292 TAGIHTLKRLKEPGTYE 308
LK L E G E
Sbjct: 295 AVARAALKVLTEEGMIE 311
|
Length = 401 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 4e-20
Identities = 78/273 (28%), Positives = 122/273 (44%), Gaps = 37/273 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPC 75
P++ + +G ++D++GNEY D V S + GH ++ A+ E + K T G
Sbjct: 39 PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLAN 98
Query: 76 LLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCY 128
+ +LAE +I VP ++ V + +SG A +++A + ++R + + Y
Sbjct: 99 VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAY 158
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV-----------------S 171
HG + A S V + L V +E + P+
Sbjct: 159 HGDT----IGAVS-VGAIDLFHQ--VYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLE 211
Query: 172 ALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229
LE L + EIAAII+EP+V G G I +L +R + + L I DEV TGF
Sbjct: 212 ELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG 271
Query: 230 RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGA 261
R A E+ VTPD+ T GK + GG LP+
Sbjct: 272 RTGKMFACEHENVTPDIMTAGKGLTGGYLPIAI 304
|
Length = 460 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 5e-20
Identities = 90/313 (28%), Positives = 135/313 (43%), Gaps = 34/313 (10%)
Query: 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENV-LAEMVISAVP 90
DG ID + SW A+ G+ ++ AA + K + FG V LA+ ++ +P
Sbjct: 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILP 101
Query: 91 -SIEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHG---HA----DPFL 136
S+ + F +SG+ A +++A + R + YHG HA DP
Sbjct: 102 PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDP-- 159
Query: 137 VKAGSGVATLGLP-----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 191
V G+ LP P + G + + L++L E EIAA+ILEP
Sbjct: 160 VTGMHGLFNHSLPVQYFLPQPSIKFGEEWND-----EAIEPLQDLLEQKGDEIAALILEP 214
Query: 192 VV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 249
VV G G P +L R + + G LLIFDE+ TGF R A E+ GV PD+ +
Sbjct: 215 VVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCI 274
Query: 250 GKIIGGG-LPVGAYGGRRDIMEMV--APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306
GK + GG L + A I + + A T NPLA +++ L E
Sbjct: 275 GKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPW 334
Query: 307 YEYLNKITGELTQ 319
+ + +I +L Q
Sbjct: 335 QQNIQRIEAQLKQ 347
|
Length = 429 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-20
Identities = 87/305 (28%), Positives = 129/305 (42%), Gaps = 37/305 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPC 75
PI F G + D G Y+D + +GHA +V+AA + T +
Sbjct: 607 PIKFVRGWGVWLIDNRGRAYLDCFNN--VCHVGHAHPRVVAAAARQAARLNTNTRYLHDA 664
Query: 76 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH--- 131
++ AE + + +P + + FVNSG+EA LRLARA TG+ I + YHG
Sbjct: 665 IVA--YAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTE 722
Query: 132 -----ADPFLVKAGSG----VATLGLPDS-------PGVPKGATYETLTAPFNDVSALEN 175
F K G G V +PDS P G + A +
Sbjct: 723 LIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAE-----QIAA 777
Query: 176 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AY 233
+ +G A I E + +G I +L + + + G + I DEV GF R+ ++
Sbjct: 778 MAAKGRG-PAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSH 836
Query: 234 GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 293
A E GV PD+ T+GK IG G P+GA R+I + + M T GNP++
Sbjct: 837 WWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIAD--SFDNGMEYFNTFGGNPVSCAI 894
Query: 294 GIHTL 298
G+ L
Sbjct: 895 GLAVL 899
|
Length = 1013 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 91/323 (28%), Positives = 136/323 (42%), Gaps = 59/323 (18%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA-------LGETMKKGTSFGAPCLLE 78
+G+ + DG Y+D V SW + GHA+ ++ AA L + M G + P +
Sbjct: 54 EGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTH-EPAVQ- 111
Query: 79 NVLAEMVISAVPS------IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEG 126
LAE +++ P + V + ++G+ L++A R R R I E
Sbjct: 112 --LAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALEN 169
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP---GVPKGATYETLTAPFND-------------- 169
YHG + L + D P V E+L AP D
Sbjct: 170 GYHGET----------IGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYA 219
Query: 170 ---VSALENLFENNKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEV 225
AL+ LFE + GEI A+ILEP + +G + P +L R + +GA LI DE+
Sbjct: 220 LQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEI 279
Query: 226 MTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAGPMYQ 280
TGF R A E GV PDL L K + GG LP+ A + + + +
Sbjct: 280 ATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLH 339
Query: 281 AGTLSGNPLAMTAGIHTLKRLKE 303
+ + +GNPLA A + TL +
Sbjct: 340 SHSYTGNPLACAAALATLDIFAD 362
|
Length = 472 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-19
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 52/312 (16%)
Query: 17 GQPIVFDSVKGSHMWDIDGNEYIDYV-GSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 75
+V +G+ + DI GN Y+D + G W +G+ ++ A E +K + F
Sbjct: 28 NATMVVAKAEGAWVTDIQGNRYLDGMSGLWC-VNVGYGRKELAEAAYEQLKTLSYF---- 82
Query: 76 LLENVLAEMVISAVPSIE-------------MVRFVNSGTEACMGVLRLARAF------T 116
+ S P+I+ ++ F NSG+EA ++AR +
Sbjct: 83 -------PLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEP 135
Query: 117 GRERIIKFEGCYHGHADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLT 164
R + I YHG++ L G G + PD +P + +
Sbjct: 136 HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYD 195
Query: 165 APFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223
V ++ + E IAA+I+EP++ G + P D++ A++ I +++GALLI D
Sbjct: 196 LE--CVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISD 253
Query: 224 EVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGP---M 278
EV+ GF R +GV PD+ T+ K I LP+ A +++I E G
Sbjct: 254 EVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHF 313
Query: 279 YQAGTLSGNPLA 290
T GNP A
Sbjct: 314 RHVNTFGGNPAA 325
|
Length = 451 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 88/315 (27%), Positives = 126/315 (40%), Gaps = 38/315 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--------KGTS 70
PI+ G +++DIDG + +D VG +GH ++V A+ + GT+
Sbjct: 25 PIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTT 84
Query: 71 FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKF 124
L L +M A + V F + G+++ L+LAR + R + I
Sbjct: 85 HPRAIELSYELIDMF--APEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISL 142
Query: 125 EGCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND----------VSAL 173
+ YHG H V + P PG T PF + L
Sbjct: 143 KQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLL 202
Query: 174 ENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
E IAA I EPV G G I P +F +R + +G LLI DEV+TGF R
Sbjct: 203 EREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRT 262
Query: 232 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA--YGGRRDIMEMVA----PAGPMYQAGTL 284
+GV PD+ L K I G +P+GA R I + G + T
Sbjct: 263 GSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNAR--IADAFEANADFGGAIMHGYTY 320
Query: 285 SGNPLAMTAGIHTLK 299
SG+P+A A + TL
Sbjct: 321 SGHPVACAAALATLD 335
|
Length = 449 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 46/310 (14%)
Query: 29 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPCLLENVLAEMV 85
H++D+ G Y+D V + ++GH ++ AA + F + E +E +
Sbjct: 578 HLFDMAGRSYLDMVNN--VTVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAE--FSERL 633
Query: 86 ISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 144
+ P ++ V VNSG+EA +RLA A +GR ++ YHG A V+
Sbjct: 634 AALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT-----VATDAVS 688
Query: 145 TL---------GLPD------SPGVPKGATYETLTAP--FNDVSA-LENLFENNKGEIAA 186
T PD SP +G +A DV A LE L + +G +A
Sbjct: 689 TSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRG-LAG 747
Query: 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF------ 240
I EPV GN+G IA P +L + + G + I DEV G YG YF
Sbjct: 748 FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVG----YGRLGHYFWGFEQQ 803
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLK 299
GV PD+ T+ K +G G P+GA RR+I E + G + G G+P++ G+ L
Sbjct: 804 GVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTG---GSPVSCRIGMAVLD 860
Query: 300 RLKEPGTYEY 309
L+E E
Sbjct: 861 VLREEKLQEN 870
|
Length = 972 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 7e-18
Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 42/324 (12%)
Query: 8 PVRAFKSVGGQ-PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
P F S+G + +V +G ++ D DG Y+D +G +G+ +++ A+ + +
Sbjct: 22 PWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQAR 81
Query: 67 KGTSFGAPCLLENV----LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR--- 118
+ + + N LA + P + V G+ A LR +
Sbjct: 82 RLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGR 141
Query: 119 ---ERIIKFEGCYHGHADPFLVKAGSGVAT--------------LGLPDSPGVPKGATYE 161
+ II YHG +L + +G A L P+ P G +
Sbjct: 142 PAKKHIITRGDAYHGST--YLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMS-- 197
Query: 162 TLTAPFND--VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 218
A F D V E+ + + IAA I EP++G+ G I P P + +R I +
Sbjct: 198 --EAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDI 255
Query: 219 LLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVA-P 274
L I DEV+TGF RL + ++ FG+ PD+ T K + G P+GA ++++++ P
Sbjct: 256 LYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGP 315
Query: 275 AGP--MYQAG-TLSGNPLAMTAGI 295
++ G T SG+P+A A +
Sbjct: 316 NAKGNVFTHGFTYSGHPVACAAAL 339
|
Length = 466 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 7e-18
Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 38/315 (12%)
Query: 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80
V S +G ++ D+DG +Y+D+ G+ +G+ V+ + E M K F +P N
Sbjct: 57 VLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAK-LPF-SPRRFTNE 113
Query: 81 ----LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 135
AE + + V F GT A L+LAR TG +++ +HG +
Sbjct: 114 TAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDA 173
Query: 136 LVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSA--------LENLFENNKGEIAA 186
+ G G+ P GV + + F D LE + E +G I A
Sbjct: 174 ISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK-EGGIGA 232
Query: 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245
I E V N+ P + +R I ++ LLI DE+ G R + +G+ PD
Sbjct: 233 FIAEAV-RNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD 291
Query: 246 LTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLS-------GNPLAMTAGIHT 297
+ +GK +GGGL P+ A M+ A +S +PL A + T
Sbjct: 292 ILCIGKGLGGGLVPIAA---------MITKDK-YNTAAQISLGHYTHEKSPLGCAAALAT 341
Query: 298 LKRLKEPGTYEYLNK 312
++ +++ G E +
Sbjct: 342 IEVIEQEGLLEKVKA 356
|
Length = 459 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 1e-17
Identities = 88/338 (26%), Positives = 141/338 (41%), Gaps = 44/338 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA----- 73
P V +G H+WD DG Y+D + +G+ + AA M++ +
Sbjct: 37 PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTT 96
Query: 74 -PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 125
P ++E L+E++ S +P + NSG+EA ++R R + ++ +I
Sbjct: 97 HPAVIE--LSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRW 154
Query: 126 GCYHGHADPFLVKAGSGVATLG-----------LPDSPGVPKGATY----ETLTAPFNDV 170
YHG + LG +PD + + Y E A F
Sbjct: 155 NGYHG--------STLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRR 206
Query: 171 SAL---ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227
+AL E + E +A + EP G G I P + I+RI ++ LL DEV+
Sbjct: 207 AALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIG 266
Query: 228 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TL 284
GF R A E+FG PD ++ K + G +P+G + I E + G ++ G T
Sbjct: 267 GFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTY 326
Query: 285 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 322
SG+P+A I LK L++ G + TG Q +
Sbjct: 327 SGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCL 364
|
Length = 460 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 87/299 (29%), Positives = 135/299 (45%), Gaps = 39/299 (13%)
Query: 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG----APCLLENVLAEMVIS 87
DG +D + SW AI G+ Q+ AA+ + + FG P + + ++V
Sbjct: 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAI--ELCRKLVAM 98
Query: 88 AVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSG 142
+E V +SG+ A +++A + R+R + YHG D F G
Sbjct: 99 TPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHG--DTF------G 150
Query: 143 VATLGLPDSP--GVPKGATYETLTAP-----F------NDVSALENLFENNKGEIAAIIL 189
++ PD+ + KG E L AP F D++ L ++ EIAA+IL
Sbjct: 151 AMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVIL 210
Query: 190 EPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247
EP+V G G P++L +R++ G LLI DE+ TGF R A E+ G+ PD+
Sbjct: 211 EPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDIL 270
Query: 248 TLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
LGK + GG + + A R++ E ++ AG T GNPLA +L L+
Sbjct: 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES 329
|
Length = 428 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 8e-17
Identities = 89/320 (27%), Positives = 137/320 (42%), Gaps = 55/320 (17%)
Query: 26 KGSHMWDIDGNEYID-YVGSWGPAIIGHADDQVLAALGETMKK--------GTSFGAPCL 76
+G ++WD +GN+ +D G W + G+ ++ A M++ T+
Sbjct: 40 EGVYLWDSEGNKILDGMAGLWCVNV-GYGRKELADAAARQMRELPYYNTFFKTTHPPAIE 98
Query: 77 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG 130
L LAE+ A P V F NSG+EA VLR+ R + ++ II + YHG
Sbjct: 99 LAAKLAEV---APPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHG 155
Query: 131 HADPFLVKAGS----------------GVATLGLPDSPGVPKGATYETLTAPFNDVSA-- 172
V S G+ + P G T E F +A
Sbjct: 156 ST----VAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEE----FGLAAARQ 207
Query: 173 LE----NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228
LE L +N +AA I EP+ G G I P + I+RI ++ LL+ DEV+ G
Sbjct: 208 LEAKILELGADN---VAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICG 264
Query: 229 F-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME-MVAPAGPMYQAGTLS 285
F R ++FG+ PDL T+ K + G +P+GA G + E ++ G T S
Sbjct: 265 FGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYS 324
Query: 286 GNPLAMTAGIHTLKRLKEPG 305
G+P+A + L+ L++ G
Sbjct: 325 GHPVAAAVALANLRILRDEG 344
|
Length = 456 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 80/332 (24%), Positives = 131/332 (39%), Gaps = 79/332 (23%)
Query: 26 KGSHMW--DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV--- 80
+G +W D +G Y+D V SW + GHA+ ++ + + + + LE+V
Sbjct: 35 RGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQ---------LEHVILA 85
Query: 81 ---------LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKF 124
L+E ++ P + + ++G+ A L+++ R ++R +
Sbjct: 86 GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTL 145
Query: 125 EGCYHGHA----------------DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168
YHG P L+ + PD P+G ++E +
Sbjct: 146 TNSYHGETLAAMSVGDVALFTETYKPLLLD----TIKVPSPDCYLRPEGMSWEEHSR--R 199
Query: 169 DVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227
+ +E + EIAA+I+EP++ G G P +L +R G LI DE+
Sbjct: 200 MFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAV 259
Query: 228 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQA---- 281
GF R A E G+ PD L K + GG LP+ A V +YQA
Sbjct: 260 GFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAA----------VLTTDTVYQAFYDD 309
Query: 282 -GTL---------SGNPLAMTAGIHTLKRLKE 303
TL +GNPLA A + TL ++
Sbjct: 310 YPTLRAFLHSHSYTGNPLACAAALATLDIFEQ 341
|
Length = 466 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 78/314 (24%), Positives = 117/314 (37%), Gaps = 37/314 (11%)
Query: 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----S 70
V +G ++WD G Y+D + +GH ++ A + S
Sbjct: 32 DAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWS 91
Query: 71 FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIK 123
+ P +E LAE + + P + V F G+EA +LA+ + G+ ++I
Sbjct: 92 YAHPPAIE--LAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVIS 149
Query: 124 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVP---------------KGATYETLTAPFN 168
YHG A +G+ P P VP G E
Sbjct: 150 RAIAYHG--TTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAA 207
Query: 169 DVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227
D +E E + +AA+ LEPV G P P + +R I LL+ DEV+
Sbjct: 208 D--RIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVIC 265
Query: 228 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TL 284
F RL E FG PD+ T K I G P+GA + E M+ G T
Sbjct: 266 AFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTF 325
Query: 285 SGNPLAMTAGIHTL 298
G+P++ + L
Sbjct: 326 GGHPVSAAVALANL 339
|
Length = 460 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 58/314 (18%)
Query: 27 GSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVI 86
G+ ++D DG Y+D + SW + GHA+ ++ AAL + + LE+ +
Sbjct: 45 GAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLD---------TLEHAMLAGCT 95
Query: 87 SAVPSIEMVR--------------FVNSGTEACMGVLRLA------RAFTGRERIIKFEG 126
P+IE+ F + G A L+++ R + +
Sbjct: 96 HE-PAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLAN 154
Query: 127 CYHGHA----------------DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170
YHG DP L++ VA+ PD+ G G T + A +
Sbjct: 155 GYHGETIGALGVTDVALFKDAYDP-LIRHAHVVAS---PDARGARPGETAADVAA--RAL 208
Query: 171 SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + LF G+IAA+I+EP+V +G P +L +R + G LI DE+ G
Sbjct: 209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGC 268
Query: 230 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQAGTL 284
R A E GV PD L K I GG LP+ R I + +
Sbjct: 269 GRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSY 328
Query: 285 SGNPLAMTAGIHTL 298
+GNPLA A + TL
Sbjct: 329 TGNPLACRAALATL 342
|
Length = 453 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGH--------ADPFLVKAGSGVATLGLPDSP 152
GT A L+LAR TGR I+ F +HG + + G+GV L +
Sbjct: 112 GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHK-RQGAGVP---LNNVT 167
Query: 153 GVPKGATYETLTAP-FNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNA 208
+P Y+ + ++ LE L E++ + AA+I+E V G G ++L
Sbjct: 168 RMP----YDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQR 223
Query: 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLP 258
+ ++ +++ LLI D++ G G +F G+TPD+ TL K I G GLP
Sbjct: 224 LAKLCRKHDILLIVDDIQAG----CGRTGTFFSFERAGITPDIVTLSKSISGYGLP 275
|
Length = 425 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 41/340 (12%)
Query: 12 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALG---ETMKKG 68
+ + G + + S G + DG+ ID + SW A GH ++ AA +TM
Sbjct: 16 YAAPGVRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSH- 74
Query: 69 TSFGAPCLLENV-LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------GRER 120
FG + L +++ ++ V + +SG+ + +++A ++ R R
Sbjct: 75 VMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTR 134
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG----VPKGATYETLTAPF--------N 168
++ + YHG D F A + + D G + KG E + AP
Sbjct: 135 LLTWRSGYHG--DTF--------AAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQ 184
Query: 169 DVSALENLFENNKGE-IAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226
++S E E +AAII+EP+V G G + +R + ++ LLI DE+
Sbjct: 185 EISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA 244
Query: 227 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQA 281
TGF R A GVTPD+ +GK + GG + A + ++++ G +
Sbjct: 245 TGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHG 304
Query: 282 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
T NPLA +L+ ++ + + +I EL G+
Sbjct: 305 PTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGL 344
|
Length = 422 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 93/343 (27%), Positives = 143/343 (41%), Gaps = 52/343 (15%)
Query: 19 PIVFDSVKGSHMWDIDGNEYID-YVGSWGPAIIGHADDQVLAALGETMKK---GT---SF 71
V S KG+ + D G++ +D + G W +G+ + ++ A E M++ T F
Sbjct: 29 VTVLASAKGATLTDASGHQLLDAFAGLWC-VNVGYGQESIVEAAAEQMRELPYATGYFHF 87
Query: 72 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRL------ARAFTGRERIIKFE 125
G+ + + A++ A S+ V F G++A +R A +++ I E
Sbjct: 88 GSEPAIR-LAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLE 146
Query: 126 GCYHGHADPFLVKAGSGVATL-------GLP-------DSPGV---PKGATYETLTAPFN 168
YHG + G+G+ L LP SP P G + + A
Sbjct: 147 RGYHGSS-----SVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA-- 199
Query: 169 DVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227
V+AL + +AA EP+ G+ G I P +L A+R +E G L + DEV+T
Sbjct: 200 SVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVIT 259
Query: 228 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGA-------YGGRRDIMEMVAPAGPM 278
GF R A E GV PDL T+ K + G +P+GA Y G D AP G
Sbjct: 260 GFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHG 319
Query: 279 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
Y T S +P++ G+ L+ E G K G+
Sbjct: 320 Y---TYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL 359
|
Length = 459 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 88/340 (25%), Positives = 141/340 (41%), Gaps = 65/340 (19%)
Query: 10 RAFKSVGGQPIVFDSVKGSHMWDIDGNEYID-YVGSWGPAIIGHADDQVLAALGETMKKG 68
R + G P+V + +G +++D G YI+ G W A+ G ++ +++ A MKK
Sbjct: 24 RRHEEEG--PLVIERGEGIYVYDDAGKRYIEGMAGLWSVAL-GFSEQRLVEAAARQMKKL 80
Query: 69 T---SFG----APCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRL------AR 113
+F P + LAE +++ P + M V F NSG+EA V++L A
Sbjct: 81 PFYHTFSHKSHGPVID---LAEKLVAMAP-VPMSKVFFTNSGSEANDTVVKLVWYYNNAL 136
Query: 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS--------PGV----------- 154
+++II + YHG V S T GLP++ +
Sbjct: 137 GRPEKKKIISRQRGYHG------VTIASASLT-GLPNNHRSFDLPLDRILHTGCPHYYRF 189
Query: 155 -PKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 212
G + E + LE L + IAA I EPV+G G I P + I+ +
Sbjct: 190 GLPGESEEAFATRLAN--ELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAV 247
Query: 213 TKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA-------YG 263
++ LL+ DEV+ GF R E FG+ PD+ + K + P+ A Y
Sbjct: 248 LRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYD 307
Query: 264 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
D + G + T SG+P+A + L ++E
Sbjct: 308 PIADESGKIGTFGHGF---TASGHPVAAAVALENLAIIEE 344
|
Length = 460 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 75/299 (25%), Positives = 112/299 (37%), Gaps = 87/299 (29%)
Query: 15 VGGQPIVFDSVK--GSHMWD-IDGNEYIDYVGSWGPAIIGH------ADDQVLAALGET- 64
V G +V D + GS++ D G Y+D + + +G D + A LG
Sbjct: 21 VDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAA 80
Query: 65 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNS------------------GTEACM 106
+ K ++ S V ++EM RFV++ G A
Sbjct: 81 LNKPSN----------------SDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVE 124
Query: 107 GVLRLA-------RAFTGRE-----RIIKFEGCYHGHA---------DPFLVKAGSGVAT 145
L++A G + +++ G +HG + DP
Sbjct: 125 NALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTAR---FPK 181
Query: 146 LGLP--DSPGVPKGATYETLTAPFNDVSALENL--------FENNKGEIAAIILEPVVGN 195
P D+P + E L +V ALE FE + +IA I EP+ G
Sbjct: 182 FDWPRIDNPKLRFPLPGEDL----EEVEALEAEALAQARAAFERHPHDIACFIAEPIQGE 237
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGK 251
G +P+F A+R + E+ ALLIFDEV TG L G A + GV PD+ GK
Sbjct: 238 GGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLT--GTAWAYQQLGVRPDIVAFGK 294
|
Length = 443 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 73/285 (25%), Positives = 106/285 (37%), Gaps = 59/285 (20%)
Query: 15 VGGQPIVFD--SVKGSHMWD-IDGNEYIDYVGSWGPAIIGH------ADDQVLAALGE-T 64
G +V D +GS + D DG Y+D + +G D A LG
Sbjct: 14 TDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA 73
Query: 65 MKKGTSFGAPCLLENVLAEMV-----ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119
+ K ++ + +A V + P++ + F+ G A L+ A + R
Sbjct: 74 VNKPSN---SDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRH 130
Query: 120 ------------RIIKFEGCYHG---------HADPFLVKAGSGVATLGLP--DSPGVPK 156
+++ +HG + DP T P D P +
Sbjct: 131 NQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDP--------RKTARFPKFDWPRIDN 182
Query: 157 GATYETLTAPFND-VSALEN--------LFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207
L AP D V ALE F +IA I EP+ G G +P+FL
Sbjct: 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLR 242
Query: 208 AIRRITKENGALLIFDEVMTGFRL-AYGGAQEYFGVTPDLTTLGK 251
A+R + E+ ALLIFDEV TG L A + GV PD+ GK
Sbjct: 243 AMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 88/329 (26%), Positives = 133/329 (40%), Gaps = 69/329 (20%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF------GAPCLLEN 79
+G + D G YID +G+ +V A+ E K+ + G +
Sbjct: 40 EGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASIT- 98
Query: 80 VLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT---GR---ERIIKFEGCYHGHA 132
L++ +I P+ + V + SG++A ++L + GR ++II YHG
Sbjct: 99 -LSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHG-- 155
Query: 133 DPFLVKAGSGVAT---LGLP------DSP--------------GVPKGATYETLTAPFND 169
SGV T GL D P G + E +A
Sbjct: 156 --------SGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSA--YC 205
Query: 170 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228
LE L + IAA I EPV+G G + P + AI+ + K+ LLI DEV+TG
Sbjct: 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTG 265
Query: 229 F-RL-AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG-------GRR--DIMEMVAPA-G 276
F RL + G+ Y G+ PDL T+ K GL AY G + D++E + G
Sbjct: 266 FGRLGSMFGSDHY-GIEPDLITVAK----GL-TSAYAPLSGSIVGEKVWDVLEQGSDEHG 319
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
+ T SG+P+ A + L L+
Sbjct: 320 AIGHGWTYSGHPICAAAALANLDILEREN 348
|
Length = 461 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 133 DPFLVKAGSGVATLGLP---DSPGVPKGATYETLTAPFN---DVSALENLF--------- 177
DP V +G + LP S + T+E+ F+ D + L +
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLD 574
Query: 178 ----ENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
G IAA+I+EPV+ G G + P F A+ ++ + +IFDEV TG RL
Sbjct: 575 EYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRL 634
Query: 232 AYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--- 287
A E G PD+ K++ GGL P+ A ++ E A GP L G+
Sbjct: 635 GVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFE--AFRGPSKLDALLHGHSYT 692
Query: 288 --PLAMTAGIHTLKRLKEPGT 306
P+ A L+ K+P T
Sbjct: 693 AHPMGCAAAAKALQWYKDPST 713
|
Length = 817 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 73/349 (20%), Positives = 121/349 (34%), Gaps = 72/349 (20%)
Query: 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSP 152
R ++ ++ + F G+E + F Y A GV +TL
Sbjct: 37 GSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYA---------ANDGVLSTLAGKGDL 87
Query: 153 -------------GVPKGATYETLTAPFNDVSALENLFENNKGEIAA--IILEPVVGNSG 197
G+ + + + ND+ LE L + I+ E V G
Sbjct: 88 IISDSLNHASIIDGI-RLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDG 146
Query: 198 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFGVTPDLT-----TLGK 251
IAP L + + K+ GA+L DE G +G E FG D TLGK
Sbjct: 147 DIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGK 202
Query: 252 IIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEY 309
G VG Y G +++++ + + T S P A + L+ L+ P E
Sbjct: 203 AFGA---VGGYIAGSKELIDYLRSYARGFIFST-SLPPAVAAAALAALEVLQGGPERRER 258
Query: 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN--FEDAKKSETTKFARF 367
L + L +G+ + G G + + +D K+ F
Sbjct: 259 LQENVRYLRRGLKELGFPVGGSPS--------------HIIPPLIGDDPAKAV-----AF 299
Query: 368 YRGMLEEGVYFAPSQFEAG--------FT-SLAHSSDDIQHTITAAEKV 407
+LE G+Y ++ + S AH+ +DI + A ++V
Sbjct: 300 SDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 168 NDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224
ND+ LE L E N I+ E V G IAP L + + ++ GALL DE
Sbjct: 153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDE 208
Query: 225 V-MTGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 276
G G G E+FG+ P+ + TLGK +G G Y G +++ +
Sbjct: 209 AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---SGGYIAGSAALIDYLRNRA 265
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKE 303
+ T + P A + L+ L+E
Sbjct: 266 RPFIFST-ALPPAVAAAALAALRILEE 291
|
Length = 388 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233
E+L + +AAII+EP+ G PDF +R ITK++ I DEV TG
Sbjct: 242 EDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTG----- 296
Query: 234 GG------AQEYFGVT--PDLTTLGK 251
G A E++ + PD+ T K
Sbjct: 297 VGATGKFWAHEHWNLDDPPDMVTFSK 322
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 62/242 (25%)
Query: 197 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTPDLT----TLG 250
G IAP L+ I + + AL++ DE TGF G G+ E GV + TLG
Sbjct: 184 GVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLG 239
Query: 251 KIIGGGLPVGAY-GGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT-Y 307
K +GG G + R++++E++ + P + +L P + A I L+ L+
Sbjct: 240 KALGGAS--GGFTTARKEVVELLRQRSRPYLFSNSLP--PAVVGASIKVLEMLEASNELR 295
Query: 308 EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364
+ L T + + AG K A H I PV + DA ++
Sbjct: 296 DRLWANTRYFRERMEAAGFDIKPADHPII---------------PVMLY-DAVLAQ---- 335
Query: 365 ARFYRGMLEEGVYFAPSQFEAGF---------------TSLAHSSDDIQHTITAAEKVLR 409
RF R +LEEG+Y GF S AH+ + + + A ++ R
Sbjct: 336 -RFARRLLEEGIYV------TGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388
Query: 410 QI 411
++
Sbjct: 389 EL 390
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 149
P + FV SGT A L + +I + AG
Sbjct: 15 PGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAG--------A 64
Query: 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209
VP DV+ LE L K +A I++ P + G + P L I
Sbjct: 65 KPVPVPVDDAGY----GGLDVAILEEL--KAKPNVALIVITPNTTSGGVLVP----LKEI 114
Query: 210 RRITKENGALLIFDEVMTGFRLAYGGAQEYFG 241
R+I KE G LL+ D G G G
Sbjct: 115 RKIAKEYGILLLVDAASAGGASPAPGVLIPEG 146
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 67/243 (27%), Positives = 96/243 (39%), Gaps = 66/243 (27%)
Query: 197 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTP--DLT--TLG 250
G IAP L I + + AL++ D+ GF G G E+FGV D+ TLG
Sbjct: 188 GDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLG 243
Query: 251 KIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLA---MTAGIHTLKRLKEPGT 306
K +GG G Y GR+++++ + Y L N LA + A I L+ L+E
Sbjct: 244 KALGGA--SGGYTAGRKEVIDWLRQRSRPY----LFSNSLAPAIVAASIKVLELLEESDE 297
Query: 307 Y-EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 362
+ L + +G+ AG H I I M G DAK +
Sbjct: 298 LRDRLWENARYFREGMTAAGFTLGPGEHPI----IPVMLG------------DAKLA--- 338
Query: 363 KFARFYRGMLEEGVYFAPSQFEAGFT---------------SLAHSSDDIQHTITAAEKV 407
F +LEEGVY GF+ S AH+ + + I A EKV
Sbjct: 339 --QEFADRLLEEGVYVI------GFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKV 390
Query: 408 LRQ 410
++
Sbjct: 391 GKE 393
|
Length = 397 |
| >gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 166 PFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224
NDV LE L E N+GE +I+ + V G IAP L + + + GA L+ D+
Sbjct: 128 RHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDD 183
Query: 225 VM-TGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY 262
TG G G E+FG+ P+ + TL K +G GAY
Sbjct: 184 AHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS---YGAY 225
|
7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 46/253 (18%), Positives = 77/253 (30%), Gaps = 40/253 (15%)
Query: 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227
D ALE + ++ +G +A + L + + KE+ LL+ DE
Sbjct: 127 LDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYA 185
Query: 228 GFRLAYGGAQEY---FGVTPD-----LTTLGKIIG-GGLPVGAYGGRRDIME-MVAPAGP 277
GF +G + + + K G G VG G ++ + A P
Sbjct: 186 GF--VFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP 243
Query: 278 MYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336
Y + A A L E + + + L G+ AG
Sbjct: 244 FY--SSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLS-----VLPS 296
Query: 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY-FAPSQFEAG----FTSL 390
+G F T + +LEE GVY S F T
Sbjct: 297 QAGF--FLLTGLDPEAALA-----------LAQVLLEEVGVYVTPGSSFGGPGWLRITVA 343
Query: 391 AHSSDDIQHTITA 403
+ ++++ + A
Sbjct: 344 GGTEEELEELLEA 356
|
Length = 357 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 61
V S R+F P+VFD KGS ++D DG EYID+ G GH + + AL
Sbjct: 14 VRSYCRSF------PVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQAL 64
|
Length = 425 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 411 | |||
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.98 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.98 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.98 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.97 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.97 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.97 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.97 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.96 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.96 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.96 | |
| PRK07324 | 373 | transaminase; Validated | 99.96 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.96 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.96 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.96 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.96 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.96 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.96 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.96 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.96 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.96 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.96 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.96 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.96 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.96 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.96 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.96 | |
| PLN02187 | 462 | rooty/superroot1 | 99.96 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.96 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.96 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.96 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.96 | |
| PLN02656 | 409 | tyrosine transaminase | 99.96 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.96 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.95 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.95 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.95 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.95 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.95 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.95 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.95 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.95 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.95 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.95 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.95 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.95 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.95 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.95 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.95 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.95 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.95 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.95 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.94 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.94 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.94 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.94 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.94 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.94 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.94 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.94 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.94 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.94 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.94 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.94 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.93 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.93 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.93 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.93 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.92 | |
| PLN02231 | 534 | alanine transaminase | 99.92 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.92 | |
| PLN02721 | 353 | threonine aldolase | 99.92 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.92 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.91 | |
| PLN02397 | 423 | aspartate transaminase | 99.91 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.91 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.91 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.91 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.91 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.91 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.91 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.91 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.91 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.91 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.91 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.9 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.9 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.89 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.89 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.89 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.89 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.89 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.89 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.88 | |
| PLN02368 | 407 | alanine transaminase | 99.88 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.88 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.88 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.88 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.87 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.87 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.87 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.87 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.87 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.87 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.86 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.86 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.86 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.85 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.85 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.84 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.84 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.84 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.84 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.84 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.84 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.83 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.82 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.82 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.82 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.81 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.81 | |
| PLN02651 | 364 | cysteine desulfurase | 99.8 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.8 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.8 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.8 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.8 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.8 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.79 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.79 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.78 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.78 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.78 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.78 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.77 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.77 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.77 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.76 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.76 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.76 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.76 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.76 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.76 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.75 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.75 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.75 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.75 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.75 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.75 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.75 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.75 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.74 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.74 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.74 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.74 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.73 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.73 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.72 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.72 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.72 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.72 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.71 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.71 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.7 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.69 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.69 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.69 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.68 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.68 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.67 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.67 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.67 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.66 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.66 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.66 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.65 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.65 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.64 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.64 | |
| PLN02263 | 470 | serine decarboxylase | 99.64 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.64 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.63 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.63 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.62 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.62 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.62 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.61 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.61 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.6 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.6 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.59 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.58 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.57 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.57 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.57 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.57 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.57 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.56 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.56 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.56 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.54 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.54 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.52 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.52 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.51 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.49 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.47 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.47 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.46 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.46 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.44 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.43 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.41 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.4 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.39 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.38 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.38 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.37 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.33 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.3 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.29 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.27 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.25 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.24 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.23 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.19 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.19 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.15 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.14 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.13 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.12 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.03 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.01 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.99 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.91 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.8 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.77 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.72 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.69 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.69 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.64 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.64 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.63 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.62 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.54 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.49 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.39 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.34 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.23 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.96 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.93 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.74 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.31 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.2 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 88.55 | |
| KOG1465 | 353 | consensus Translation initiation factor 2B, beta s | 85.57 |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=491.64 Aligned_cols=411 Identities=59% Similarity=1.024 Sum_probs=390.1
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+||||++|.+.+.+..|+.+.+++|+++||.|||+|+||..+|++.-+||+||.|++|+.++++++..++.+++.+.+
T Consensus 18 ~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~Pte~Ei~ 97 (432)
T COG0001 18 IPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAPTELEVE 97 (432)
T ss_pred CCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 79999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.+.+..+..+.|-|+||||||...||+++|.++++++|+.|+++|||+.+..+...|.+......|...+++.....
T Consensus 98 ~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~ 177 (432)
T COG0001 98 LAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAK 177 (432)
T ss_pred HHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhc
Confidence 99999999998899999999999999999999999999999999999999999999988887777777889999988899
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..+|+||++.+++++++.++++++||+||+.++.|.+.|+++|++.|+++|++||++||.||+.+|||.....+++.+
T Consensus 178 ~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~ 257 (432)
T COG0001 178 HTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYY 257 (432)
T ss_pred cEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccccc
Confidence 99999999999999999998889999999999999999999999999999999999999999999999977766788899
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 319 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 319 (411)
++.||+.|++|.++||+|+|.+.+++++++.+.+..+.++.+|+++||++++++.+.++.+.. +...+++.+..+++++
T Consensus 258 gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~ 337 (432)
T COG0001 258 GVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAE 337 (432)
T ss_pred CcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888889999999999999999999999887 5689999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
.|++...++++...+...|.++.+.+......++..+...+.+...++.+.|.++||++.|+.+....++..+|+++|++
T Consensus 338 gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~ea~flS~ahte~di~~ 417 (432)
T COG0001 338 GLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLSTAHTEEDIDR 417 (432)
T ss_pred HHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccccceeeecccCHHHHHH
Confidence 99999999999999999999999999887788888888777777888888999999999999887889999999999999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
.+++++++++++
T Consensus 418 ~~~a~~~~~~~~ 429 (432)
T COG0001 418 TLEAADEAFKEL 429 (432)
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-71 Score=489.20 Aligned_cols=372 Identities=32% Similarity=0.466 Sum_probs=338.7
Q ss_pred cccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhC
Q 015230 12 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAV 89 (411)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~ 89 (411)
++..++.|+++.+++|+|+||.+|++|+||.++++++++||+||.+++++.+++++.. ...+.++...+++++|.+..
T Consensus 18 ~~~Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s 97 (404)
T COG4992 18 MPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELS 97 (404)
T ss_pred hcccCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhC
Confidence 4445556899999999999999999999999999999999999999999999999954 45578999999999999998
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccC---CcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 165 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~---~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (411)
+..++|+|+|||+||+|+||+++|.+.+ +.+||.+.++|||++..++.+++.+-+..++ |.. ..+..+
T Consensus 98 ~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~--------~g~~~v 169 (404)
T COG4992 98 PFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLL--------PGFRHV 169 (404)
T ss_pred ccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCC--------CCceec
Confidence 6699999999999999999999999887 6799999999999999999999986444332 222 246789
Q ss_pred CCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCc
Q 015230 166 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244 (411)
Q Consensus 166 ~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~ 244 (411)
|+||+++++++++ +++++|++||+++++|++.++++|+++++++|++||+++|.||+|+|+ |+|++|+.+++++.|
T Consensus 170 pfnDi~al~~ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~P 246 (404)
T COG4992 170 PFNDIEALEAAID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEP 246 (404)
T ss_pred CCCCHHHHHHHhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCC
Confidence 9999999999998 489999999999999999999999999999999999999999999999 999999999999999
Q ss_pred chhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 245 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 245 d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
||++++|+++||+|+|++.+++...+.+. +..|++||++||++|+++.++++.+.++++.++.++.+.+++++|+++
T Consensus 247 DI~tlaK~LgGG~PigA~la~~~~~~~~~---~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l 323 (404)
T COG4992 247 DILTLAKALGGGFPIGAMLATEEIASAFT---PGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLREL 323 (404)
T ss_pred CEEEeeccccCCccceeeEEchhhhhcCC---CCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988866666666 567999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~ 402 (411)
..+++....++|.|+++.+++.... .+..+.+.+.++|+++.+.+.+.+|+ |+.+|+++++++++
T Consensus 324 ~~~~~~v~~vRG~GLmiGiel~~~~-------------~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~ 390 (404)
T COG4992 324 KRRYPLVKEVRGRGLMIGIELKEPY-------------RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALD 390 (404)
T ss_pred hhcCCceeeeecceeEEEEEecCcc-------------cHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHH
Confidence 9999988999999999999996431 34789999999999999999888887 79999999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|++++..
T Consensus 391 ~l~~~l~~ 398 (404)
T COG4992 391 ALERALAA 398 (404)
T ss_pred HHHHHHHH
Confidence 99999875
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=474.99 Aligned_cols=392 Identities=30% Similarity=0.466 Sum_probs=337.0
Q ss_pred cccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCC-CHHHHHHHHHHH
Q 015230 10 RAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAP-CLLENVLAEMVI 86 (411)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~-~~~~~~l~~~l~ 86 (411)
|++... ..|+++.++.|+++||.|||+||||.++.++.++||+||.|++|+.+++++..+ +.+. .+...+++++|.
T Consensus 31 r~~~~~-~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~ 109 (447)
T COG0160 31 RSYGRF-RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLT 109 (447)
T ss_pred cccccc-cCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence 444432 469999999999999999999999999999999999999999999999999642 2333 388899999999
Q ss_pred hhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcc-cCC-CCCCCCCCCCCCce
Q 015230 87 SAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT-LGL-PDSPGVPKGATYET 162 (411)
Q Consensus 87 ~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~-~~~-~~~~~~~~~~~~~~ 162 (411)
+..+ +.+.++|++||+||++.|+|+++.++++..||.|.++|||.+..++.+++....+ ... +..+++...+....
T Consensus 110 ~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~ 189 (447)
T COG0160 110 ALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNP 189 (447)
T ss_pred HhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCcc
Confidence 9998 4789999999999999999999999999999999999999999999999875443 222 22222333333444
Q ss_pred eecCCC---------CHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 163 LTAPFN---------DVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 163 ~~~~~~---------d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
++.++. ..+.+++.+.. .+++++++|+||+++++|.+.++++|+++++++|+|||+++|+||||+||
T Consensus 190 yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~G 269 (447)
T COG0160 190 YRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFG 269 (447)
T ss_pred ccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 444432 24445654543 45689999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 230 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
|+|.+|+++++++.||++|+||++++|+|+|.+++++++.+ .. +..+++||.+||++++++.+.|+.++++++.++
T Consensus 270 RTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~---~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~ 345 (447)
T COG0160 270 RTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WP---PGGHGGTFGGNPVACAAALAVLDVIEEENLLER 345 (447)
T ss_pred ccccchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cC---CcccCCCCCcCHHHHHHHHHHHHHHHHccHHHH
Confidence 99999999999999999999999999999999999999987 44 455777999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Cccee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGF 387 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~ 387 (411)
..+.+++++++|.++..+++.+.+++|.|+|+.+++.++.. .+.|+...+.++.+.++++|+++..++ .+.+|
T Consensus 346 a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~-----t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviR 420 (447)
T COG0160 346 AAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRD-----TKEPDAELAAKIVARAFERGLLLLTCGPHGNVLR 420 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCC-----CCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEE
Confidence 99999999999999999999999999999999999976421 122566788999999999999998887 56666
Q ss_pred e--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 388 T--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 388 ~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+ |+++|++++|+++++|+++++++
T Consensus 421 i~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 421 ILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred EeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 5 89999999999999999998763
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=478.74 Aligned_cols=411 Identities=86% Similarity=1.390 Sum_probs=351.7
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++.+|.+...+..|+++.+++|+++||.||++|+||.+++++..+||+||++.+++.++++++..++.+.+...+
T Consensus 64 ~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~ 143 (474)
T PLN02482 64 MPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENV 143 (474)
T ss_pred CCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Confidence 79999999999977667799999999999999999999999999999999999999999999999998777778888999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.+.+..++.+++.|++||+||++.|++++|.++++.+||.+.++|||+++......+.+......+...+.+.....
T Consensus 144 lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 223 (474)
T PLN02482 144 LAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATS 223 (474)
T ss_pred HHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCC
Confidence 99999999988899999999999999999999999999999999999999887665544333222222334444444445
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..+++||++++++.++++++++++||+||+++++|.+.|+++|+++|+++|++||+++|+||+++|||+|..++.+++
T Consensus 224 ~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~ 303 (474)
T PLN02482 224 ATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYF 303 (474)
T ss_pred CeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHh
Confidence 67889999999999999877778999999999999999999999999999999999999999999999988888888889
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|++|+++||+|+|++.+++++++.+.+....++++|++++|++++++.++|+.+++++++++++++.++++++
T Consensus 304 gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~ 383 (474)
T PLN02482 304 GITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQG 383 (474)
T ss_pred CCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654456678899999999999999999998889999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++..+++......+.+.++.+++...+..++.....++......+.+.|+++||++.+.+++...+++.+|++|||++
T Consensus 384 L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~~~psl~ht~~dId~~ 463 (474)
T PLN02482 384 ILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEAGFTSLAHTEEDIDFT 463 (474)
T ss_pred HHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCCCcCCCCCCHHHHHHH
Confidence 99998776544333343447788776554433333333344456788999999999999875443347899999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++++++++++
T Consensus 464 l~al~~~l~~~ 474 (474)
T PLN02482 464 IAAAERVLARI 474 (474)
T ss_pred HHHHHHHHHhC
Confidence 99999999864
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-63 Score=468.80 Aligned_cols=410 Identities=50% Similarity=0.920 Sum_probs=351.4
Q ss_pred CCCCccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHH
Q 015230 1 MPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN 79 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~ 79 (411)
+|+|+++..|.+...+ ..|+++.+++|+++||.||++|+||.+++++..+||+||++.+|+.++++++..+.++++...
T Consensus 17 ~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~ 96 (428)
T PRK12389 17 IVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEI 96 (428)
T ss_pred CCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCCCHHHH
Confidence 6999999999885443 568999999999999999999999999999999999999999999999998766667788899
Q ss_pred HHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCC
Q 015230 80 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 159 (411)
Q Consensus 80 ~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 159 (411)
+++++|.+..++.++++|++||+||++.|+++++.++++.+||.+.++|||.+..++...+........+...++.....
T Consensus 97 ~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (428)
T PRK12389 97 EFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIA 176 (428)
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCccc
Confidence 99999999888788999999999999999999999999999999999999999998888765433222233334433334
Q ss_pred CceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccc
Q 015230 160 YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239 (411)
Q Consensus 160 ~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~ 239 (411)
.++..++++|++.+++.++++++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+++|||++..++.++
T Consensus 177 ~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~ 256 (428)
T PRK12389 177 QEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDL 256 (428)
T ss_pred CceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHH
Confidence 56788999999999999987667899999999999999999999999999999999999999999999997776677778
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.||++|++|+++||+|+|.+++++++++.+......++++|+++||++++++++.++.++++++.++++++++++++
T Consensus 257 ~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~ 336 (428)
T PRK12389 257 LGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEE 336 (428)
T ss_pred hCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998864334567889999999999999999999888899999999999999
Q ss_pred HHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHH
Q 015230 320 GIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQ 398 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~ 398 (411)
.|+++..+++....+ ++.| ++.+++......++.....++...+..+.+.|+++||++.+.+.+.+.+++.+|++|++
T Consensus 337 ~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~l~~t~e~id 415 (428)
T PRK12389 337 GILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAWFLTTAHTEEDIE 415 (428)
T ss_pred HHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCeeecCCCCHHHHH
Confidence 999998888877777 4455 77888865433222111112334467889999999999998766667789999999999
Q ss_pred HHHHHHHHHHHhC
Q 015230 399 HTITAAEKVLRQI 411 (411)
Q Consensus 399 ~~i~~l~~~~~~~ 411 (411)
+++++++++++++
T Consensus 416 ~~~~~l~~~l~~~ 428 (428)
T PRK12389 416 ETLEAVDRAFAQL 428 (428)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999864
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-61 Score=451.57 Aligned_cols=407 Identities=40% Similarity=0.669 Sum_probs=343.7
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|+|+++..|.+...+..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++..+..+++...+
T Consensus 18 ~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~ 97 (433)
T PRK00615 18 FPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEIL 97 (433)
T ss_pred CCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 69999999998866666799999999999999999999999999999999999999999999999987666677888899
Q ss_pred HHHHHHhhCCC-CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCCCCCCC
Q 015230 81 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPK 156 (411)
Q Consensus 81 l~~~l~~~~~~-~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~ 156 (411)
+++.|.+..+. .+++.|++||+||++.|+++++.++++.+|+.+.++|||+++. +....+..... .+...+ +.
T Consensus 98 la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~--~~~~~~-~~ 174 (433)
T PRK00615 98 FAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDT--LTHLVD-TD 174 (433)
T ss_pred HHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCc--CCCCCC-CC
Confidence 99999999873 5799999999999999999999999999999999999998743 33333321100 000111 11
Q ss_pred CCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcc
Q 015230 157 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 236 (411)
Q Consensus 157 ~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~ 236 (411)
........++++|++++++.++++.+++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|||+|.+++
T Consensus 175 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga 254 (433)
T PRK00615 175 LAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGA 254 (433)
T ss_pred CCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHH
Confidence 11233456789999999999987667899999999999999999999999999999999999999999999998888888
Q ss_pred ccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015230 237 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316 (411)
Q Consensus 237 ~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~ 316 (411)
.+++++.||++++||+++||+|+|++++++++++.+......++++|++++|+++++++++++.+++++++++++++.++
T Consensus 255 ~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~ 334 (433)
T PRK00615 255 AAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQN 334 (433)
T ss_pred HHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 88899999999999999999999999999999998864444567789999999999999999999888899999999999
Q ss_pred HHHHHHHHHHhcCC-ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHH
Q 015230 317 LTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSD 395 (411)
Q Consensus 317 ~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~ 395 (411)
++++|+++..+.+. ....+ .|+++.+++.....+++......+......+.+.|.++||++.+..++...++..+|++
T Consensus 335 l~~~l~~~~~~~g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ls~~ht~~ 413 (433)
T PRK00615 335 FLSPIEEMIRSQGFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEASFLSSAHSME 413 (433)
T ss_pred HHHHHHHHHHHcCCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccccceecCCCHH
Confidence 99999998776444 33444 89999999976554444333333445567899999999999998876666788999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
|||+++++++++++++
T Consensus 414 did~~~~a~~~~~~~~ 429 (433)
T PRK00615 414 NLDYAQNVLIDSLEKV 429 (433)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998763
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=440.74 Aligned_cols=402 Identities=27% Similarity=0.334 Sum_probs=335.2
Q ss_pred ccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVL 81 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l 81 (411)
+|++.-.+.+....|.++.+++|.+++|.+|++|+|.+|+||+++.||++|++.+|+.+++++... .+++.+...+|
T Consensus 13 ~whP~t~~~~~~~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~L 92 (449)
T COG0161 13 LWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIEL 92 (449)
T ss_pred eeccccccccccccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHH
Confidence 567666666554338899999999999999999999999999999999999999999999999543 34556668999
Q ss_pred HHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcC-CCCc-ccCCCCC
Q 015230 82 AEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG-SGVA-TLGLPDS 151 (411)
Q Consensus 82 ~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g-~~~~-~~~~~~~ 151 (411)
+++|.+..| + .++|+|++|||+|++.|||+++.| +++.++|...++|||.+.+++..+| ...+ ....+..
T Consensus 93 A~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll 172 (449)
T COG0161 93 AEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLL 172 (449)
T ss_pred HHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccc
Confidence 999999998 6 999999999999999999999876 2356799999999999999999888 3333 1111112
Q ss_pred CCCCCCCCCceeecCC---------CCHHHHHHHHHcCC-CcEEEEEEcccCCC-CCccCCCHHHHHHHHHHHHHhCCEE
Q 015230 152 PGVPKGATYETLTAPF---------NDVSALENLFENNK-GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALL 220 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~---------~d~~~l~~~~~~~~-~~~~~vi~~~~~~~-~G~~~~~~~~l~~i~~l~~~~~~~l 220 (411)
.+..+-.....+..+. ...++|++.+.++. +++++||+||+.+. ||++.|++.|+++++++|++||+++
T Consensus 173 ~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILl 252 (449)
T COG0161 173 PEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILL 252 (449)
T ss_pred cCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEE
Confidence 2111111111111111 23677888888765 89999999998888 9999999999999999999999999
Q ss_pred EEecccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC--CCCcccccCCCCCHHHHHHHHH
Q 015230 221 IFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIH 296 (411)
Q Consensus 221 i~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~ 296 (411)
|+|||.+|| |+|++|+.+++++.||++|++|++++| +|+|++.+++++.+.+.. ....+|+.|++++|++||++++
T Consensus 253 I~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla 332 (449)
T COG0161 253 IADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALA 332 (449)
T ss_pred EeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHH
Confidence 999999999 999999999999999999999999999 799999999999999875 4567899999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe
Q 015230 297 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 376 (411)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 376 (411)
.|+++++++++++.++...++.+.|+++...+|.+.++++.|++..+++..+..+.... +.....++.+.+.++|+
T Consensus 333 ~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f----~~~~~~~~~~~~~e~Gl 408 (449)
T COG0161 333 NLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPF----EARVGARVRAAALERGL 408 (449)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccch----hhhHHHHHHHHHHHCCe
Confidence 99999999999999999999999999966667899999999999999997643211100 23446789999999999
Q ss_pred EeccCCCcc-eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 377 YFAPSQFEA-GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 377 ~v~~~~~~~-~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++|.+.-. +.+|+++|++|++++++++.+++++
T Consensus 409 ~iRp~g~~i~~~PPliit~~eid~l~~~l~~al~~ 443 (449)
T COG0161 409 LIRPLGDVIYLMPPLIITREEIDELVDALREALDE 443 (449)
T ss_pred EEeecCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 999996422 2347999999999999999999875
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=414.97 Aligned_cols=386 Identities=27% Similarity=0.345 Sum_probs=335.5
Q ss_pred ccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCC
Q 015230 13 KSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~ 90 (411)
......|.+|.+++|+|+||.+|++|+|+.++.++..+||+||++.+++.+++.... ...+.++...++++.|.+.+|
T Consensus 27 ~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P 106 (442)
T KOG1404|consen 27 TSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLP 106 (442)
T ss_pred eccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCC
Confidence 334457999999999999999999999999999999999999999999999998743 346778889999999999998
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC-CCCCCCCCceeecCCC
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFN 168 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (411)
+.+.++|+|||+||+++||++++.|++.-++|.+.++|||.+..++.+++...++.+.+... +..+-..+++++.++.
T Consensus 107 ~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~ 186 (442)
T KOG1404|consen 107 GDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFG 186 (442)
T ss_pred CCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999888887766542 4433344455555543
Q ss_pred C----------HHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc
Q 015230 169 D----------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236 (411)
Q Consensus 169 d----------~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~ 236 (411)
+ .+++++.+.. .+++++++++|++++.+|++.+++.|+++..++|+++|.++|.||||+|| |+|.++.
T Consensus 187 ~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wg 266 (442)
T KOG1404|consen 187 GSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWG 266 (442)
T ss_pred CCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccccccc
Confidence 2 2344444443 45789999999999999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015230 237 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316 (411)
Q Consensus 237 ~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~ 316 (411)
++..++.|||+|++|++++|.|+|++++++++.+-+.+.. .+++|++++|++|+++.++|+.+++++++++..+.+.+
T Consensus 267 fe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~--~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~y 344 (442)
T KOG1404|consen 267 FESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKS--SHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSY 344 (442)
T ss_pred ccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhcc--ccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887532 26789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCC
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAH 392 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~ 392 (411)
++++|.++.++++++.+++|+|+++.+++.+..... +.|.......+.+.++++|++|.-++. +.+|| |+++
T Consensus 345 l~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~----~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlci 420 (442)
T KOG1404|consen 345 LLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEP----KPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCI 420 (442)
T ss_pred HHHHHHHHhhcCCceeecccceeEEEEEEecccCCC----CCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeec
Confidence 999999999999999999999999999997764322 225556667899999999999977642 34666 7999
Q ss_pred CHHHHHHHHHHH
Q 015230 393 SSDDIQHTITAA 404 (411)
Q Consensus 393 t~~~i~~~i~~l 404 (411)
|++|++.+++..
T Consensus 421 T~edi~f~~~~~ 432 (442)
T KOG1404|consen 421 TKEDIDFAVEYF 432 (442)
T ss_pred cHHHHHHHHHHH
Confidence 999998887755
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=446.20 Aligned_cols=411 Identities=60% Similarity=1.017 Sum_probs=346.8
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+.+..|.++..+..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++..+.++.+...+
T Consensus 13 ~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~ 92 (423)
T TIGR00713 13 FPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEIL 92 (423)
T ss_pred CCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHH
Confidence 79999998887765556799999999999999999999999999999999999999999999999987666667778899
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.+++.++..++++|++||+||++.|+++++.++++++||.+.++|||.+......++.+......+...+.+.....
T Consensus 93 lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (423)
T TIGR00713 93 LAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAK 172 (423)
T ss_pred HHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCccccc
Confidence 99999999886789999999999999999999999999999999999999987777655443222212222333333334
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
....++++|++++++.++++++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+||++|..+..+++
T Consensus 173 ~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~ 252 (423)
T TIGR00713 173 LTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYF 252 (423)
T ss_pred ceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHh
Confidence 57788899999999999866568999999999999999988899999999999999999999999999977766667778
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++||||++++|+|+||+++++++++.+.......+++|+++++++++++.++++.++++++.++++++.+++++.
T Consensus 253 ~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~ 332 (423)
T TIGR00713 253 GVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEG 332 (423)
T ss_pred CCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988743344567899999999999999999998777999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++..++++...+++.|+++.+++......++.....++...+..+.+.|.++||++.+.+++.+++.+.+|+++++++
T Consensus 333 l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~~t~~~i~~~ 412 (423)
T TIGR00713 333 LSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAAHTEEDIENT 412 (423)
T ss_pred HHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECCCCHHHHHHH
Confidence 99988888888888899999999886433222111111233345678889999999998776666788777999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++|++++++|
T Consensus 413 ~~~l~~~l~~~ 423 (423)
T TIGR00713 413 IEAAEEVFAEL 423 (423)
T ss_pred HHHHHHHHhhC
Confidence 99999999875
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-59 Score=440.61 Aligned_cols=411 Identities=65% Similarity=1.094 Sum_probs=350.8
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|+|.+++.+.+++.+.+|+++.+++|.++||.+|++|+||.+++++.++||+||++.+++.++++++..+.+......+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~ 94 (426)
T PRK00062 15 IPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVE 94 (426)
T ss_pred CCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHH
Confidence 59999999999998877789999999999999999999999999999999999999999999999986555567788899
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++.+.+++.++++|++||++|++.|+++++.++++++||.++++|||.+..+....+........+...+.+.....
T Consensus 95 la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (426)
T PRK00062 95 LAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAK 174 (426)
T ss_pred HHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCccccc
Confidence 99999998877789999999999999999999998889999999999999987777665543211111211222111123
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
....++++|++++++.+++.++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|+++|.++..+++
T Consensus 175 ~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~ 254 (426)
T PRK00062 175 HTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYY 254 (426)
T ss_pred ceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHh
Confidence 46778899999999999866678999999999999999999999999999999999999999999999977777777788
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++++||++++|+|+|++++++++++.+......++++|+++++++++++.++++.+++++++++++++.++++++
T Consensus 255 ~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~ 334 (426)
T PRK00062 255 GVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEG 334 (426)
T ss_pred CCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988644445677789999999999999999998888999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++..+++....+++.|+++.+++.......+.....++...+..+.+.|.++||++.+.+++.+++++++|+++++++
T Consensus 335 l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~~~~~t~~ei~~~ 414 (426)
T PRK00062 335 LKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVSAAHTDEDIEKT 414 (426)
T ss_pred HHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceeeeccCCHHHHHHH
Confidence 99988888888888999999999997543333222222344556789999999999999987777888999999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++|+++++++
T Consensus 415 ~~~l~~~l~~~ 425 (426)
T PRK00062 415 LEAARKAFAAL 425 (426)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=438.90 Aligned_cols=403 Identities=28% Similarity=0.430 Sum_probs=334.1
Q ss_pred CCCCc-cCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHH
Q 015230 1 MPGGV-NSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN 79 (411)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~ 79 (411)
||+|+ ++..|.++ ...|+++.+++|+++||.||++|+||.+++++..+||+||++.+++.++++++..+.++++...
T Consensus 41 ~p~g~~~~~~~~~~--~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~ 118 (453)
T PRK07046 41 LLGGVPMHWMNDWP--TPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPSEDAA 118 (453)
T ss_pred CCCCcccccccccC--CCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 79999 55556663 2579999999999999999999999999999999999999999999999999776777889999
Q ss_pred HHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCC
Q 015230 80 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 159 (411)
Q Consensus 80 ~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 159 (411)
++++.+.+.. +.+++.|++||+||++.|++++|.++++.+|+.+.++|||+++..+.....+. ....+...+.+....
T Consensus 119 ~lAe~l~~~~-~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~-~~~~~~~~g~~~~~~ 196 (453)
T PRK07046 119 WVGEELARRF-GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGR-PVQRPGLLGQVHDLT 196 (453)
T ss_pred HHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCC-CCCCCCCCCCCcccc
Confidence 9999999988 48899999999999999999999999999999999999999876664321110 001122223333333
Q ss_pred CceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccc
Q 015230 160 YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239 (411)
Q Consensus 160 ~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~ 239 (411)
.++..+++||++.+++.+. .+++++||+||+++++|.+.++++|+++|+++|++||+++|+||+++ ||.|.....++
T Consensus 197 ~~~~~~~~nd~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~~~ 273 (453)
T PRK07046 197 ATTRVVEFNDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRA 273 (453)
T ss_pred CceEeeCCCCHHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchhHH
Confidence 4577889999999999985 36899999999999999999999999999999999999999999998 64443345667
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCC------CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA------GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~------~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 313 (411)
+++.||+++++|+++||+|+|++.+++++++.+.+. ....+++||+++|++++++.+.++.++++++.++++++
T Consensus 274 ~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~ 353 (453)
T PRK07046 274 HGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLAL 353 (453)
T ss_pred hCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 899999999999999999999999999999887531 22346789999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhccc-chHHHHHHHHHHHHcCeEeccCCCcceeeecCC
Q 015230 314 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH 392 (411)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~ 392 (411)
+++++++|+++..+++....+++.|.++.+.+.+....++.....+ +......+...|.++||++.+.+ +.++++..+
T Consensus 354 g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~-~~~~~~p~~ 432 (453)
T PRK07046 354 AARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPFH-NMMLVCPAT 432 (453)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEeccc-CcEEEeCCC
Confidence 9999999999988888888999999998888754333222111111 23345678888999999998854 455666679
Q ss_pred CHHHHHHHHHHHHHHHHhC
Q 015230 393 SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~~ 411 (411)
|++||++++++++++++++
T Consensus 433 t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 433 TAADVDRLVAAFDACLGEL 451 (453)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=439.57 Aligned_cols=392 Identities=25% Similarity=0.357 Sum_probs=324.4
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCC-CCC
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.. ..+..+...+++++|.+..+ +.+
T Consensus 34 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 113 (451)
T PRK06062 34 INPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLS 113 (451)
T ss_pred CCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCC
Confidence 358999999999999999999999999999999999999999999999998543 34568888999999999987 478
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC---CC-
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---ND- 169 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d- 169 (411)
+++|++||+||++.||++++.++++.+||.+.++|||.+..++..++........+...++........+..++ +|
T Consensus 114 ~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 193 (451)
T PRK06062 114 KVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEE 193 (451)
T ss_pred EEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChH
Confidence 99999999999999999999999999999999999999999998877543221111122221111111222222 23
Q ss_pred ------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC
Q 015230 170 ------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 241 (411)
Q Consensus 170 ------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~ 241 (411)
++++++.++.. ++++++|++||+++++|++.++++|+++|+++|++||+++|+|||++|| |+|.+++.++++
T Consensus 194 ~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~g 273 (451)
T PRK06062 194 EECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFG 273 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcC
Confidence 67788888653 3679999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCcchhhhhhhccCCc-ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-HHHHH
Q 015230 242 VTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT-GELTQ 319 (411)
Q Consensus 242 ~~~d~~~~sK~~~~G~-~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 319 (411)
+.||+++++|++++|+ |+|.+++++++++.+.. ....+++||+++|++|+++.++|+.++++++.++.++.+ .++++
T Consensus 274 v~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~-~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~ 352 (451)
T PRK06062 274 VVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD-RPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGP 352 (451)
T ss_pred CCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999999995 99999999999888863 233567799999999999999999998888999999998 69999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCC--CCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPV--YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSD 395 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~ 395 (411)
.|+++..+++.+.++++.|+++.+++.++.. .++.... ........+.+.|+++||++.+.+ +.+++ |+.+|++
T Consensus 353 ~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~Gvl~~~~~-~~lrl~ppl~~t~~ 430 (451)
T PRK06062 353 GLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYG-ASSAAMAAVKAACKERGLLPFVNG-NRIHVVPPCTVTED 430 (451)
T ss_pred HHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccc-hhhHHHHHHHHHHHHCCcEEeecC-CEEEEECCccCCHH
Confidence 9999988888888999999999999964321 1110000 012245688999999999987643 45555 6799999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
+||+++++|+++++++
T Consensus 431 eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 431 EVREGLAILDAALAVA 446 (451)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=438.49 Aligned_cols=373 Identities=26% Similarity=0.383 Sum_probs=323.8
Q ss_pred CCCeEEEeecC-cEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCC-CC
Q 015230 17 GQPIVFDSVKG-SHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 17 ~~~~~~~~~~g-~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
..|+++.+++| +++||.||++|+||.+++++.++||+||++.+|+.++++++..+ .+..+...++++.|.+..+ +.
T Consensus 62 ~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~ 141 (459)
T PRK11522 62 DYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKL 141 (459)
T ss_pred CCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCC
Confidence 45789999999 99999999999999999999999999999999999999985433 3568888999999999987 57
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccC---CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~---~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
++++|++||+||++.|+++++.+++ +.+||++.++|||++..++..++......++ .+.. ..+..+|++|
T Consensus 142 ~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~--~~~~-----~~~~~~~~~d 214 (459)
T PRK11522 142 KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPF--MPLL-----PGFRHVPFGN 214 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCC--CCCC-----CCCcccCCCC
Confidence 8999999999999999999998874 6689999999999999998887764333211 1111 2355678889
Q ss_pred HHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 170 VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 170 ~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
.+++++.++. .++++++|++||+++++|.+.++++|+++++++|++||+++|+||+|+|| |+|.+++.+++++.||
T Consensus 215 ~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD 294 (459)
T PRK11522 215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPD 294 (459)
T ss_pred HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCC
Confidence 9999988864 34679999999999999999999999999999999999999999999999 9999989999999999
Q ss_pred hhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 246 ~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
++++||++++| +|+|++++++++++.+.. .+..+++|++++|++++++.++++.++++++.++++++++++++.|+++
T Consensus 295 ivt~gK~lggG~~Pigav~~~~~i~~~~~~-~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l 373 (459)
T PRK11522 295 ILCLAKALGGGVMPIGATIATEEVFSVLFD-NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQL 373 (459)
T ss_pred EEEechhhhCCCccceeEEEcHHHHHHhcc-CCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 699999999998887742 2446788999999999999999999988899999999999999999999
Q ss_pred HHhcC-CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHHHHHH
Q 015230 325 GKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQH 399 (411)
Q Consensus 325 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~~i~~ 399 (411)
..+++ .+.++++.|+++.+++.+. .....+.+.|+++||++.+.. .+.+|+ ++++|++++++
T Consensus 374 ~~~~~~~i~~VrG~Gl~~giel~~~-------------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~ 440 (459)
T PRK11522 374 AREYPDLVQEARGKGMLMAIEFVDN-------------EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQ 440 (459)
T ss_pred HHhCCCceeeEEeceeEEEEEecCc-------------hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHH
Confidence 88887 6789999999999999532 234678999999999998753 344554 78999999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|.+++++
T Consensus 441 ~l~~l~~~l~~ 451 (459)
T PRK11522 441 VLKAARKALAA 451 (459)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=439.91 Aligned_cols=391 Identities=22% Similarity=0.266 Sum_probs=320.0
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.+++++... +.+.++...++++.|.+..+ +.
T Consensus 28 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 107 (459)
T PRK05965 28 GVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL 107 (459)
T ss_pred CCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc
Confidence 47899999999999999999999999999999999999999999999998542 24567888899999999987 67
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 165 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (411)
++++|++||+||++.|||++|.+ +++.+||.+.++|||.+..+...++.......+ +...+.........+..
T Consensus 108 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (459)
T PRK05965 108 NHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRN 187 (459)
T ss_pred CEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCccccc
Confidence 89999999999999999999987 347789999999999998887777654322211 11111100000001111
Q ss_pred CC-CC--------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 166 PF-ND--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 166 ~~-~d--------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
+. +| ++++++.+++. ++++++||+||+++++|++.++++|+++|+++|++||+++|+|||++|| |+|.+
T Consensus 188 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 188 PVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 11 23 35778888754 3689999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
++.+++++.||++|++|+++|| +|+|.+++++++++.+... ....+++|++++|++|+++.++++.++++++.++
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 347 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLAN 347 (459)
T ss_pred hhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999 5999999999998887532 1245788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
.++++.++++.|+++. +++.+.++++.|+++.+++....... ....+....+..+.+.++++|+++.+.+.+.+++
T Consensus 348 ~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~--~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~ 424 (459)
T PRK05965 348 GQKAGPRFAAGLDALR-AHPLVGDVRGRGLLGALELVADKATK--TPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFA 424 (459)
T ss_pred HHHHHHHHHHHHHhhc-cCCCEEEEeecceEEEEEEecccccc--CCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEE
Confidence 9999999999999985 57888999999999999996432110 0000112345778899999999998876555554
Q ss_pred -ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 -SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
|+++|++++++++++|.++++++
T Consensus 425 PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 425 PALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998763
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=434.17 Aligned_cols=369 Identities=27% Similarity=0.391 Sum_probs=317.5
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHhhCC-CCCEE
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVP-SIEMV 95 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--~~~~~~~~l~~~l~~~~~-~~~~v 95 (411)
.+++.++.|+|+||.||++|+||.+++++.++||+||++.+|+.++++++.... ...+...+++++|.+..+ ..+++
T Consensus 58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v 137 (442)
T TIGR03372 58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYS 137 (442)
T ss_pred eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEE
Confidence 444567777999999999999999999999999999999999999999854332 457888999999999987 46899
Q ss_pred EEeCChHHHHHHHHHHHHhcc---CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHH
Q 015230 96 RFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 172 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~---~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 172 (411)
+|++||+||++.|+++++.++ ++.+||++.++|||.+..++..++......... + ....+..+|++|.+.
T Consensus 138 ~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~-----p--~~~~~~~~p~~d~~~ 210 (442)
T TIGR03372 138 FFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFM-----P--LLPGFHHVAFGDIEA 210 (442)
T ss_pred EEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCC-----C--CCCCCEEeCCCCHHH
Confidence 999999999999999999885 678999999999999999988877633221110 0 012356788889998
Q ss_pred HHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhh
Q 015230 173 LENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248 (411)
Q Consensus 173 l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~ 248 (411)
+++.+++ +++++++|++||+++++|++.++++|+++++++|++||+++|+||+|+|| |+|.+++.+++++.||+++
T Consensus 211 ~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt 290 (442)
T TIGR03372 211 MLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC 290 (442)
T ss_pred HHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee
Confidence 8888863 45689999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 249 LGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 249 ~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
+||++++| +|+|.+++++++.+.+.. .+..+++|+++||++++++.++++.++++++.++.+++++++++.|+++..+
T Consensus 291 ~gK~lg~G~~Pigavv~~~~i~~~~~~-~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~ 369 (442)
T TIGR03372 291 LAKALGGGVMPIGATIATEAVFSVLFD-NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAE 369 (442)
T ss_pred ehhhhcCCcccceEEEecHHHHHhhhc-cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 699999999999888742 2446788999999999999999999988899999999999999999999888
Q ss_pred cC-CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHHHHHHHHH
Q 015230 328 AG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 328 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~~i~~~i~ 402 (411)
++ .+.++++.|+++.+++.+. .....+.+.|+++||++.+.+ .+.+|+ |+++|++++|++++
T Consensus 370 ~~~~i~~vRG~Gl~~giel~~~-------------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~ 436 (442)
T TIGR03372 370 YPDLIIEARGKGLLMAIEFRDN-------------EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIK 436 (442)
T ss_pred CCCceEEEecceEEEEEEeCCh-------------HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHH
Confidence 88 6789999999999999532 234678999999999997653 245554 79999999999999
Q ss_pred HHHHHH
Q 015230 403 AAEKVL 408 (411)
Q Consensus 403 ~l~~~~ 408 (411)
+|++++
T Consensus 437 ~l~~~~ 442 (442)
T TIGR03372 437 AAKDAL 442 (442)
T ss_pred HHHHhC
Confidence 999864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=438.54 Aligned_cols=403 Identities=25% Similarity=0.300 Sum_probs=330.3
Q ss_pred ccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC----CCCCHHHH
Q 015230 5 VNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLEN 79 (411)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~----~~~~~~~~ 79 (411)
+|++...+..+. ..|+++.+++|+++||.||++|+||.+++++..+||+||++.+|+.++++++... ++.++...
T Consensus 10 ~w~p~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~ 89 (449)
T PRK07481 10 FWHPMAHPAEMKARPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAI 89 (449)
T ss_pred ccCCcccccccccCCCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHH
Confidence 677777666553 2589999999999999999999999999999999999999999999999985422 35688889
Q ss_pred HHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccC-CCC
Q 015230 80 VLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPD 150 (411)
Q Consensus 80 ~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ 150 (411)
+++++|.+..+ +.++++|++||+||++.|+++++.++ ++.+||.+.++|||.+..++.+++....... .+.
T Consensus 90 ~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~ 169 (449)
T PRK07481 90 ELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPL 169 (449)
T ss_pred HHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCC
Confidence 99999999884 57899999999999999999999874 5788999999999999988877765432211 122
Q ss_pred CCCCCCCCCCceeecCCC--CHHHH--------HHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCE
Q 015230 151 SPGVPKGATYETLTAPFN--DVSAL--------ENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGAL 219 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~--d~~~l--------~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~ 219 (411)
..++..........++++ |.+.+ ++.+. ++++++++|++||+++++|.+.++++|+++|+++|++||++
T Consensus 170 ~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~l 249 (449)
T PRK07481 170 LPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGIL 249 (449)
T ss_pred CCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCE
Confidence 233322222233344554 54443 44443 34578999999999999999999999999999999999999
Q ss_pred EEEecccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHH
Q 015230 220 LIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTA 293 (411)
Q Consensus 220 li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~ 293 (411)
+|+||+++|| |+|.+++.+++++.||+++++|+++|| +|+|.+++++++++.+... ....+++|++++|+++++
T Consensus 250 lI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aa 329 (449)
T PRK07481 250 LIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAA 329 (449)
T ss_pred EEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHH
Confidence 9999999999 999999999999999999999999999 5999999999998887532 234578899999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC-CCcchhcccchHHHHHHHHHHH
Q 015230 294 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV-YNFEDAKKSETTKFARFYRGML 372 (411)
Q Consensus 294 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 372 (411)
+.++++.++++++.+++++.++++++.|+++..+++.+.++++.|+++.+++..+.. ... ..+.......+.+.++
T Consensus 330 a~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~---~~~~~~~~~~~~~~~~ 406 (449)
T PRK07481 330 ALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREP---IDPSKGYANAVADVAR 406 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCC---CCchhHHHHHHHHHHH
Confidence 999999998899999999999999999999988889999999999999999964321 100 0011234567888999
Q ss_pred HcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 373 EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 373 ~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++|+++.+.+. .+++ |+++|+++||+++++|+++++++
T Consensus 407 ~~Gvl~~~~g~-~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 407 ENGVLVRPSGT-KIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred hCCeEEEecCC-EEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999988753 3444 68899999999999999998764
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=438.16 Aligned_cols=389 Identities=24% Similarity=0.326 Sum_probs=322.4
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++... .+.++...++++.|.+..+..+++
T Consensus 29 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v 108 (451)
T PRK07678 29 ATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGGEYVI 108 (451)
T ss_pred CCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCCCCEE
Confidence 488999999999999999999999999999999999999999999999985432 356778899999999998766799
Q ss_pred EEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCC-
Q 015230 96 RFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF- 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 167 (411)
+|++||+||++.||++++.++ ++.+||.+.++|||++..++..++.......+ +...++...........++
T Consensus 109 ~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (451)
T PRK07678 109 FFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGI 188 (451)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCcccccccc
Confidence 999999999999999999875 46789999999999999998887754332221 2222322111222233322
Q ss_pred -----CC---HHHHHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc
Q 015230 168 -----ND---VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 237 (411)
Q Consensus 168 -----~d---~~~l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~ 237 (411)
+| ++.+++.++ .+++++++||+||+++++|.+.++++|+++++++|++||+++|+|||++|| |+|.+++.
T Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~ 268 (451)
T PRK07678 189 ESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGF 268 (451)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHH
Confidence 12 234566675 345789999999999999999999999999999999999999999999999 99998889
Q ss_pred cccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCC---CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015230 238 EYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313 (411)
Q Consensus 238 ~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 313 (411)
+++|+.||++|++|+++|| +|+|.+++++++++.+.... ...+++|++++|++|+++.++++.++++++.++++++
T Consensus 269 ~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~ 348 (451)
T PRK07678 269 MNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQL 348 (451)
T ss_pred HhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999988 79999999999998886321 2457889999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhccc-chHHHHHHHHHHHHcCeEeccCC------Ccce
Q 015230 314 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-ETTKFARFYRGMLEEGVYFAPSQ------FEAG 386 (411)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gi~v~~~~------~~~~ 386 (411)
++++++.|+++..+++.+.++++.|+++.+++..+... ..+ +...+..+.+.|+++|+++.+.+ .+.+
T Consensus 349 g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~-----~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~l 423 (451)
T PRK07678 349 GELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKET-----KEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVL 423 (451)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcc-----cCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEE
Confidence 99999999988788888899999999999999643211 111 23446788999999999997643 1445
Q ss_pred ee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 387 FT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 387 ~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++ ++++|++||++++++++++++++
T Consensus 424 rl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 424 TLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 55 68899999999999999998764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=439.40 Aligned_cols=389 Identities=20% Similarity=0.227 Sum_probs=319.8
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.|||+|+||.+++++.++||+||++.+|+.++++++.. ..+.++...++++.|.+..+ +.
T Consensus 32 ~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~ 111 (461)
T PRK07482 32 PGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGM 111 (461)
T ss_pred CCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 48899999999999999999999999999999999999999999999998642 24668889999999999987 58
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 165 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (411)
++++|++||+||++.|||+++.+ +++.+||.+.++|||.+..+..+++.......+ +...+............
T Consensus 112 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (461)
T PRK07482 112 SKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRR 191 (461)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccc
Confidence 99999999999999999999866 347889999999999998888777654332211 11111110000001110
Q ss_pred C----------CCCHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc
Q 015230 166 P----------FNDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233 (411)
Q Consensus 166 ~----------~~d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~ 233 (411)
+ ..+++.+++.+.+ .++++++||+||+++++|++.++++|+++|+++|++||+++|+|||++|| |+|.
T Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~ 271 (461)
T PRK07482 192 ADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS 271 (461)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc
Confidence 0 1146778888853 35689999999999999999999999999999999999999999999999 9999
Q ss_pred CccccccCCCcchhhhhhhccCCc-ccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~G~-~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
+++.+++++.||++|++|+++||+ |+|.+++++++.+.+... ....+++|+++||++|+++.++++.++++++.+
T Consensus 272 ~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~ 351 (461)
T PRK07482 272 MFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVG 351 (461)
T ss_pred hhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999995 999999999988877532 234578899999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC--CCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccc
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV--YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEA 385 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~ 385 (411)
+.+++++++++.|+++..+++.+.++++.|+++.+++.+... .++ ......+..+.+.++++|+++.+.. .+.
T Consensus 352 ~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~----~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~ 427 (461)
T PRK07482 352 NAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPF----DPALKIGPQVSAAALERGVIARAMPHGDI 427 (461)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCC----ChhhHHHHHHHHHHHHCCcEEecCCCCCE
Confidence 999999999999999988899999999999999999964321 110 0111235688999999999996542 344
Q ss_pred eee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 386 GFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 386 ~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++ |+++|++||++++++|++++++
T Consensus 428 i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 428 LGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 544 7999999999999999998865
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=433.99 Aligned_cols=403 Identities=24% Similarity=0.306 Sum_probs=323.2
Q ss_pred CccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC----CCCCHHH
Q 015230 4 GVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLE 78 (411)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~----~~~~~~~ 78 (411)
++|+++....+.. ..|+++.+++|+++||.||++|+||.+++|+.++||+||++.+|+.++++++..+ .+.++..
T Consensus 56 ~~~~p~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~ 135 (504)
T PLN02760 56 DMLAPFTAGWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPS 135 (504)
T ss_pred CcccCcccccccccCCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHH
Confidence 5777777766543 3589999999999999999999999999999999999999999999999985422 3567888
Q ss_pred HHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-C
Q 015230 79 NVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P 149 (411)
Q Consensus 79 ~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~ 149 (411)
.+++++|.+.++ +.++++|++||+||++.||++++.+ +++.+||+++++|||.+..++.++|.......+ +
T Consensus 136 ~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~ 215 (504)
T PLN02760 136 LDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDL 215 (504)
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCC
Confidence 999999999864 4679999999999999999999865 346789999999999988887777653322111 1
Q ss_pred CCCCCCCCCCCceee--cCCCC--------HHHHHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCC
Q 015230 150 DSPGVPKGATYETLT--APFND--------VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 218 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~--~~~~d--------~~~l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~ 218 (411)
....+........+. ++..+ .+++++.+. +.++++++||+||+++++|++.++++|+++|+++|++||+
T Consensus 216 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~ 295 (504)
T PLN02760 216 PAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDI 295 (504)
T ss_pred CCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 111111100001111 11111 245777664 3456899999999999999999999999999999999999
Q ss_pred EEEEecccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHH
Q 015230 219 LLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMT 292 (411)
Q Consensus 219 ~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a 292 (411)
++|+|||++|| |+|.+++.+++++.||++|++|+++|| +|+|++++++++++.+... ....+++|++++|++|+
T Consensus 296 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~A 375 (504)
T PLN02760 296 LFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCA 375 (504)
T ss_pred EEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHH
Confidence 99999999999 999999999999999999999999988 5999999999999887532 12357889999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH
Q 015230 293 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 372 (411)
Q Consensus 293 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 372 (411)
++.++++.++++++.++++++++++++.|+++ .+++++.++++.|+++.+++.+..... ....+....+..+.+.++
T Consensus 376 aala~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~--~~~~~~~~~~~~i~~~~~ 452 (504)
T PLN02760 376 VALEALKIYKERNIPEHVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPN--DPFPAEWGVGAYFGAECK 452 (504)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCccc--ccccchhHHHHHHHHHHH
Confidence 99999999998999999999999999999998 667888999999999999996532110 000011234577889999
Q ss_pred HcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 373 EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 373 ~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++||++.+.+ +.+++ ++++|++|||+++++|++++++
T Consensus 453 ~~Gvl~~~~g-~~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 453 KRGMLVRVAG-DNIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred hCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999998765 34555 6889999999999999998875
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=432.94 Aligned_cols=390 Identities=26% Similarity=0.389 Sum_probs=314.9
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCCCC-
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPSI- 92 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~- 92 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.. ..++++...++++.|.+..++.
T Consensus 39 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~ 118 (459)
T PRK06931 39 KLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQG 118 (459)
T ss_pred CCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999999999999999999999986332 2356788899999999998732
Q ss_pred ---CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCC
Q 015230 93 ---EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 93 ---~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (411)
..+++++||+||++.||++++.++++.+||.+.++|||++..++.+++.......+ +..+++...+....+.++++
T Consensus 119 ~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (459)
T PRK06931 119 KEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLG 198 (459)
T ss_pred ccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCcccccccc
Confidence 23466699999999999999999999999999999999999998877653322111 11222221122223333332
Q ss_pred -----CHHHH----HHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc
Q 015230 169 -----DVSAL----ENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235 (411)
Q Consensus 169 -----d~~~l----~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~ 235 (411)
+.+.+ ++.++. .++++++||+||+++++|.+.++++|+++|+++|++||+++|+|||++|| |+|.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~ 278 (459)
T PRK06931 199 IGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF 278 (459)
T ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHH
Confidence 23333 333332 34579999999999999999999999999999999999999999999999 999999
Q ss_pred cccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015230 236 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 315 (411)
Q Consensus 236 ~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~ 315 (411)
+++++++.||+++++|+++||+|+|.+++++++ +.+. ...+++||++||++|+++.+.++.++++++.++.+++++
T Consensus 279 a~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~---~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~ 354 (459)
T PRK06931 279 AFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQ---PGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGE 354 (459)
T ss_pred HhhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhcc---CCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999998877664 6554 345788999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC-CCcchhcccchHHHHHHHHHHHHcCeEeccCC--Cccee--eec
Q 015230 316 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV-YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGF--TSL 390 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~--~~~ 390 (411)
++++.|+++..+++.+.++++.|+++.+++.++.. .+.......+...+..+.+.+.++|+++.+.+ .+.++ +|+
T Consensus 355 ~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl 434 (459)
T PRK06931 355 WLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPL 434 (459)
T ss_pred HHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCC
Confidence 99999999988899999999999999999964321 11000000122345678899999999998754 24455 489
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
++|++++++++++|++++++
T Consensus 435 ~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 435 LITQAECEEFIDRFEQALLA 454 (459)
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=431.76 Aligned_cols=379 Identities=26% Similarity=0.382 Sum_probs=314.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCCC--C
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS--I 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~--~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++..+ .+..+...+++++|.+.++. .
T Consensus 38 ~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 117 (443)
T PRK06058 38 LPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHE 117 (443)
T ss_pred CCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 478999999999999999999999999999999999999999999999985422 24577889999999999873 3
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceeecCCCC-
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPFND- 169 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d- 169 (411)
++++|++||+||++.|+++++.++++++||.+.++|||.+..++.+++... ....+ +...+.... ....++++
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 193 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRA----PMSYPYRDP 193 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEc----CCCcccccc
Confidence 799999999999999999999999999999999999999999888776421 11111 101111000 00011111
Q ss_pred --------------HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 170 --------------VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 170 --------------~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
.+.+++.+ .++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.+
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~--~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~ 271 (443)
T PRK06058 194 KGLATDGEEAAARAITVIEKQV--GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAW 271 (443)
T ss_pred cccccchHHHHHHHHHHHHHhh--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhh
Confidence 11222222 24689999999999999999999999999999999999999999999999 99998
Q ss_pred ccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 314 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~ 314 (411)
++.+++++.||+++++|++++|+|+|++++++++++.+.. ..+++|+++||++|+++.++++.++++++.+++++++
T Consensus 272 fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~~---~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g 348 (443)
T PRK06058 272 FACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHP---GGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIE 348 (443)
T ss_pred hHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhccC---CCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 8899999999999999999999999999999999888763 3467899999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ec
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SL 390 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~ 390 (411)
++++++|+++..+++.+.++++.|+++.+++.+.... .++...+..+.+.+.++||++.+++ .+.+|+ |+
T Consensus 349 ~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~------~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl 422 (443)
T PRK06058 349 ALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTT------EPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPL 422 (443)
T ss_pred HHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCC------CCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCC
Confidence 9999999999888888899999999999999653211 1233456778889999999998754 245665 79
Q ss_pred CCCHHHHHHHHHHHHHHHHhC
Q 015230 391 AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++|++++++++++|+++++++
T Consensus 423 ~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 423 VIGDELLREGLDVLEAALADL 443 (443)
T ss_pred ccCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=398.36 Aligned_cols=399 Identities=44% Similarity=0.680 Sum_probs=340.3
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLE 78 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~ 78 (411)
||.+.++..|........|+.+.+++|+.++|.+|++|+||.++||+.-+||++|++.+++.+++.++. ...+.+...
T Consensus 21 ~~~i~~~~~~~~~t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~ea 100 (433)
T KOG1401|consen 21 MPGIVEEKTRIVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLEA 100 (433)
T ss_pred cccccccceEEeeecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHHH
Confidence 688888999999999999999999999999999999999999999999999999999999999999953 334445557
Q ss_pred HHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCc------EEEEEeCCcCCCchhhhhhcCCCCcccCCCC
Q 015230 79 NVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRE------RIIKFEGCYHGHADPFLVKAGSGVATLGLPD 150 (411)
Q Consensus 79 ~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~------~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 150 (411)
..+++.+.+..+ ..++|+|+||||||++.||+++|++...+ ++|.+.++|||.+.+++...+...+..+..+
T Consensus 101 v~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p 180 (433)
T KOG1401|consen 101 VELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDP 180 (433)
T ss_pred HHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCC
Confidence 888888888885 78999999999999999999999875433 4999999999999999998877655544322
Q ss_pred CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 151 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
....+...++||..++++.++.+.++++++|+||+++.||.+++++||+..|+++|+++|+++|.||+++||
T Consensus 181 -------~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~g 253 (433)
T KOG1401|consen 181 -------IAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLG 253 (433)
T ss_pred -------CCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCcc
Confidence 234677889999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 230 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
|.|..++.+++++.||+.|++|.++||+|+|++.+++++.+.+.+..+.+|++||++||++|.++...++.+.+++.+++
T Consensus 254 R~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~ 333 (433)
T KOG1401|consen 254 RLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKN 333 (433)
T ss_pred ccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 388 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~ 388 (411)
+.+..+.+++.|.+...+.+..... .++|+++.+.+..+.- .+.+...........+.+.+.+.|+++.|- ..+
T Consensus 334 vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~-~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~----~~l 408 (433)
T KOG1401|consen 334 VSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVY-KFADAAREQGLLILTLGKGLLEEGVRIAPI----YLL 408 (433)
T ss_pred HHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechh-hhhhhhhhhhHHHHHHhcccccceEEEecc----ccc
Confidence 9999999999999998887766555 7889999988865422 111111122223334444445667777771 122
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...+|+|.++++++++.+.++++
T Consensus 409 ~~~~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 409 TVEHTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred cccCcHHHHHHHHHHHHHHHHHh
Confidence 44556899999999999998764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=429.06 Aligned_cols=391 Identities=23% Similarity=0.283 Sum_probs=318.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--C-CCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~-~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.. . .+..+...+++++|.+..+ +.+
T Consensus 12 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 91 (443)
T PRK07483 12 TLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLE 91 (443)
T ss_pred CCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999999999999999999999999999999998532 2 2567888999999999887 678
Q ss_pred EEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecC
Q 015230 94 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 166 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (411)
+++|++||+||++.|+++++.+ +++.+||.+.++|||.+..++.+++.......+ +...+.........+..+
T Consensus 92 ~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 171 (443)
T PRK07483 92 HVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQ 171 (443)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCcccccc
Confidence 9999999999999999999987 567889999999999999998887754322111 111111000000000000
Q ss_pred CC----------CHHHHHHHHHc-CCCcEEEEEEcccCC-CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc
Q 015230 167 FN----------DVSALENLFEN-NKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233 (411)
Q Consensus 167 ~~----------d~~~l~~~~~~-~~~~~~~vi~~~~~~-~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~ 233 (411)
.. .++++++.+.. .++++++|++||+++ ++|.+.++++|+++|+++|++||+++|+||+++|| |+|.
T Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~ 251 (443)
T PRK07483 172 RAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT 251 (443)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH
Confidence 00 12566665643 456899999999998 58999999999999999999999999999999999 9999
Q ss_pred CccccccCCCcchhhhhhhccCCc-ccccccccHHHHHHhcCCC-CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~G~-~~g~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
+++.+++++.||+++++|+++||+ |+|.+++++++.+.+.... ...+++|+++||++++++.+.++.++++++.++++
T Consensus 252 ~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~ 331 (443)
T PRK07483 252 LFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVR 331 (443)
T ss_pred HHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999995 9999999999988876422 23578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Cc
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FE 384 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~ 384 (411)
++++++++.|+++..+++.+.++++.|+++.+++.+...... ...+.......+.+.++++|+++.+.+ .+
T Consensus 332 ~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~ 409 (443)
T PRK07483 332 ARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKA--PFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGD 409 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccC--CCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCC
Confidence 999999999999888888889999999999999964321100 000112245678899999999998653 24
Q ss_pred ceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 385 AGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 385 ~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+++ |+++|++++|+++++|++++++
T Consensus 410 ~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 410 HVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5554 7999999999999999999875
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=430.71 Aligned_cols=383 Identities=22% Similarity=0.294 Sum_probs=318.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++. ...+..+...+++++|.+..+ ..+
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~ 115 (453)
T PRK06943 36 PLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLG 115 (453)
T ss_pred CCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 4889999999999999999999999999999999999999999999999853 224568888999999999887 458
Q ss_pred EEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecC
Q 015230 94 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 166 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (411)
+++|++||+||++.|+++++.+ +++.+||.+.++|||.+..++.+++.......+ +...+............+
T Consensus 116 ~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (453)
T PRK06943 116 HAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGAR 195 (453)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccc
Confidence 9999999999999999999654 467899999999999999998888754333221 111111000000000111
Q ss_pred ---------CCCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc
Q 015230 167 ---------FNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235 (411)
Q Consensus 167 ---------~~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~ 235 (411)
.++++++++.++++++++++|++|| +++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.++
T Consensus 196 ~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f 275 (453)
T PRK06943 196 PGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF 275 (453)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh
Confidence 1246788888887778999999999 59999999999999999999999999999999999999 999999
Q ss_pred cccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC---CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 236 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 236 ~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
+.+++++.||+++++|+++|| +|+|.+++++++.+.+... ....+++|+++||++|+++.+.++.++++++.++.+
T Consensus 276 a~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~ 355 (453)
T PRK06943 276 ACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNA 355 (453)
T ss_pred HHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999 5999999999998887532 123578899999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--e
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 389 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~ 389 (411)
++++++++.|+++. +++.+.++++.|+++.+++..+.. +....+..+.+.+.++|+++.+.+ +.+++ |
T Consensus 356 ~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gvel~~~~~--------~~~~~~~~i~~~~~~~Gll~~~~g-~~l~~~Pp 425 (453)
T PRK06943 356 RKSARLRAALAPLA-AHPQVRHLRQRGTIFAFDVALDGD--------AARTFSRRFFEAALERELLLRPIG-TTVYLMPP 425 (453)
T ss_pred HHHHHHHHHHHHHh-cCCCEEeEeccccEEEEEEccCCC--------cchHHHHHHHHHHHHCCcEEEecC-CEEEEeCC
Confidence 99999999999984 467777999999999999963210 122335788899999999998865 34554 6
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 015230 390 LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++|+++|++++++|++++++
T Consensus 426 l~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 426 YVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred CcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=431.08 Aligned_cols=387 Identities=20% Similarity=0.306 Sum_probs=320.3
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
++++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.. ..+..+...++++.|.+..+ +.++
T Consensus 30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 109 (466)
T PRK07030 30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR 109 (466)
T ss_pred CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence 5689999999999999999999999999999999999999999999998532 24678889999999999887 6789
Q ss_pred EEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec--
Q 015230 95 VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA-- 165 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-- 165 (411)
++|++||+||++.|+++++.+ +++.+||.+.++|||.+..++.+++.......+ +...+....+.......
T Consensus 110 v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~ 189 (466)
T PRK07030 110 CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPE 189 (466)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcccccc
Confidence 999999999999999999876 467889999999999999988877654322211 11111110001111111
Q ss_pred -------CCCCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc
Q 015230 166 -------PFNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236 (411)
Q Consensus 166 -------~~~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~ 236 (411)
..++++++++.++++++++++||+|| +++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.+++
T Consensus 190 ~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a 269 (466)
T PRK07030 190 GMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFA 269 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchH
Confidence 12246778888887778999999999 79999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 237 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 237 ~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
.+++++.||+++++|+++|| +|+|.+++++++.+.+... ....+++|++++|++|+++.++++.++++++.++.+
T Consensus 270 ~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~ 349 (466)
T PRK07030 270 CEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNR 349 (466)
T ss_pred HHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999 5999999999998877421 234688899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCC--CcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY--NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
++++++++.|+++. +++.+.++++.|+++.+++.+.... ++. ........+.+.+.++|+++.+.+ +.+++
T Consensus 350 ~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~----~~~~~~~~i~~~~~~~Gvl~~~~g-~~i~~~ 423 (466)
T PRK07030 350 ALARRMAEATAHLA-DHPHVAEVRQTGMILAIEMVQDKASKTPYP----WQERRGLKVYQHALERGALLRPLG-SVVYFL 423 (466)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEeEeceeEEEEEeccCccccccCc----chhHHHHHHHHHHHHCCeEEEecC-CEEEEE
Confidence 99999999999984 6788889999999999999643221 110 112234678899999999998864 35544
Q ss_pred -ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 -SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
|+++|+++|++++++|+++++++
T Consensus 424 Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 424 PPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998763
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=430.78 Aligned_cols=389 Identities=25% Similarity=0.345 Sum_probs=315.2
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCCC-C
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS-I 92 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~-~ 92 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++... ..+.++...++++.+.+..+. .
T Consensus 44 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~ 123 (464)
T PRK06938 44 RIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAF 123 (464)
T ss_pred CCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccc
Confidence 358999999999999999999999999999999999999999999999976321 245678889999999998863 2
Q ss_pred ---CEEEEe-CChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCC
Q 015230 93 ---EMVRFV-NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 93 ---~~v~~~-~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 167 (411)
++++|+ +||+||++.||++++.++++.+||.+.++|||++..++.+++.......+ +...++...........++
T Consensus 124 ~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 203 (464)
T PRK06938 124 AREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPF 203 (464)
T ss_pred cccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccc
Confidence 367665 79999999999999999999999999999999999998887653222111 1111110000000000111
Q ss_pred ---------CCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 168 ---------NDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 168 ---------~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
.+.+.+++.+++. .+++++||+||+++++|.+.++++|+++++++|++||+++|+|||++|| |+|.+
T Consensus 204 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~ 283 (464)
T PRK06938 204 GLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKM 283 (464)
T ss_pred cCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHH
Confidence 1256778888643 2479999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 314 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~ 314 (411)
++++++++.||+++++|+++||+|+|.+++++++ +.+. ...+++||++||++|+++.+.++.++++++.++.++++
T Consensus 284 ~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~---~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G 359 (464)
T PRK06938 284 FAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQ---PGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMG 359 (464)
T ss_pred HHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccC---CCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999988774 5553 34578899999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC-CCcchhccc-chHHHHHHHHHHHHcCeEeccCC--Ccceee--
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV-YNFEDAKKS-ETTKFARFYRGMLEEGVYFAPSQ--FEAGFT-- 388 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~-- 388 (411)
+++++.|+++..+++.+.++++.|+++.+++.+... .+.. ...+ +...+..+.+.+.++|+++.+.+ .+.+++
T Consensus 360 ~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~P 438 (464)
T PRK06938 360 ERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDAL-GHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLP 438 (464)
T ss_pred HHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCccccccc-ccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEEC
Confidence 999999999988889999999999999999964321 1110 1111 22345778899999999998754 244544
Q ss_pred ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+.+|++|++++++++++++.+
T Consensus 439 pl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 439 PLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred CCccCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999875
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=424.51 Aligned_cols=377 Identities=28% Similarity=0.387 Sum_probs=318.1
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCCC--CC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS--IE 93 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~--~~ 93 (411)
|+.+.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++... .++.+...++++++.+..++ .+
T Consensus 23 p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (425)
T PRK07495 23 QIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAK 102 (425)
T ss_pred CeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCC
Confidence 88999999999999999999999999999999999999999999999985432 35677889999999999874 37
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCCC---
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFND--- 169 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d--- 169 (411)
+++|++||+||++.|+++++.++++.+|+.+.++|||.+..++.+++.. .....+... ...+..+++++
T Consensus 103 ~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 175 (425)
T PRK07495 103 KTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAM-------MPDVYHVPFPVELH 175 (425)
T ss_pred EEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCC-------CCCeEEecCCcccc
Confidence 9999999999999999999999999999999999999998877766642 222111100 01233333332
Q ss_pred -------HHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 170 -------VSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 170 -------~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
++++++.+++ .++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|.+++.++
T Consensus 176 g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~ 255 (425)
T PRK07495 176 GVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEH 255 (425)
T ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecc
Confidence 5566777753 34689999999999999989999999999999999999999999999999 9998888888
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.||++++||++++|+|+|++++++++++.+.. ..+++|++++|++++++.++++.++++++.++++++++++++
T Consensus 256 ~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~ 332 (425)
T PRK07495 256 HEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGP---GGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQ 332 (425)
T ss_pred cCCCCCEEeehhhhcCCccceEEEEcHHHHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888763 346779999999999999999999888999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSD 395 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~ 395 (411)
+|+++..+++.+.++++.|+++++++.+.+. ..++...+..+.+.++++|+++.+.+ .+.+++ |+++|++
T Consensus 333 ~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~------~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~ 406 (425)
T PRK07495 333 RLASLRETVPEIADIRGPGFMNAVEFNDADS------GLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDD 406 (425)
T ss_pred HHHHHHhhCCCeeeeecCceEEEEEEecCCC------CCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHH
Confidence 9999988888888999999999999965321 11333446788999999999997643 245554 7999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++|+++++|+++++++
T Consensus 407 ~id~~~~~l~~~l~~~ 422 (425)
T PRK07495 407 VFAEALDILEASILEA 422 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998763
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=427.66 Aligned_cols=390 Identities=24% Similarity=0.329 Sum_probs=319.6
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.. ...+.++...++++.|.+..+ +.+
T Consensus 38 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 117 (460)
T PRK06916 38 DPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGLK 117 (460)
T ss_pred CCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999999999999999999999843 234567888999999999987 468
Q ss_pred EEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecC
Q 015230 94 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 166 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (411)
+++|++||+||++.|+++++.+ +++.+||.+.++|||.+..++.+++.......+ +...+....+....+..+
T Consensus 118 ~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~ 197 (460)
T PRK06916 118 KVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSP 197 (460)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccc
Confidence 9999999999999999999874 567899999999999999988877754322211 111111000001111111
Q ss_pred C---------CCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc
Q 015230 167 F---------NDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235 (411)
Q Consensus 167 ~---------~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~ 235 (411)
. .+++.+++.++++++++++|++|| +++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.++
T Consensus 198 ~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~ 277 (460)
T PRK06916 198 YGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF 277 (460)
T ss_pred cCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh
Confidence 1 146777888877778999999999 69999999999999999999999999999999999999 999999
Q ss_pred cccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC----CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 236 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 236 ~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
+.+++++.||+++++|+++|| +|+|.+++++++++.+.. .....+++|++++|++++++.++++.++++++.+++
T Consensus 278 a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~ 357 (460)
T PRK06916 278 ACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQV 357 (460)
T ss_pred HHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999 599999999999887742 123457789999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCccee--e
Q 015230 311 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--T 388 (411)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~ 388 (411)
+++++++++.|+++.. ++.+.++++.|+++.+++.++... ..........+..+.+.++++|+++.+.+ +.++ +
T Consensus 358 ~~~g~~l~~~l~~l~~-~~~v~~vrG~Glm~giel~~~~~~--~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~l~~~P 433 (460)
T PRK06916 358 ARKTEYVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKET--KEPFEWTERVGVQVCKRSRELGMLTRPLG-NTIVFMP 433 (460)
T ss_pred HHHHHHHHHHHHHhhc-CCCeEEeecCCceeeEEeeccccc--ccCCCchhhHHHHHHHHHHHCCeEEEecC-CEEEEeC
Confidence 9999999999999854 788889999999999999643210 00000112234678899999999998865 3444 3
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
|+++|+++|++++++|+++++++
T Consensus 434 pl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 434 PLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred CcccCHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999998764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=425.17 Aligned_cols=386 Identities=24% Similarity=0.352 Sum_probs=318.4
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCCCC--
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPSI-- 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~-- 92 (411)
.|+++.+++|+++||.|||+|+||.+++++.++||+||++.+|+.++++++... .+..+...++++.|.+..++.
T Consensus 24 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 103 (445)
T PRK08593 24 YPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFE 103 (445)
T ss_pred CCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 488999999999999999999999999999999999999999999999986433 246788899999999998743
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCc-ccCC-CCCCCCCCCCCCceeec--CCC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA-TLGL-PDSPGVPKGATYETLTA--PFN 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~--~~~ 168 (411)
++|+|++||+||++.||++++.++++.+||.+.++|||.+..++.+++.... .... +...++......+.... ..+
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEP 183 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 7999999999999999999999999999999999999999998887764221 1111 11112110000011111 111
Q ss_pred C-------HHHHHHHHHcC--CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 169 D-------VSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 169 d-------~~~l~~~~~~~--~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
+ ++++++.+++. ++++++||+||+++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~ 263 (445)
T PRK08593 184 DANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSIS 263 (445)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHH
Confidence 1 24455555432 4689999999999999999999999999999999999999999999999 999888888
Q ss_pred ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
++++.||++++||++++|+|+|++++++++++.+.. ..+..|+.++|++++++.++++.++++++.+++++++++++
T Consensus 264 ~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 340 (445)
T PRK08593 264 HFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEA---PAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYAR 340 (445)
T ss_pred hcCCCCCEeeecccccCCcccEEEEEcHHHHhhhcc---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 899999999999999999999999999999988853 23556999999999999999999988899999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 396 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~ 396 (411)
+.|+++..+++.+.++++.|+++.+++...... ..++...+..+...|+++||++.+.+.+.+|+ ++.+|++|
T Consensus 341 ~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~-----~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~ 415 (445)
T PRK08593 341 KRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKL-----KTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQ 415 (445)
T ss_pred HHHHHHHhcCCcEEEEeccceEEEEEEecCCCc-----CCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHH
Confidence 999999888899999999999999998643211 11334456789999999999998765566664 79999999
Q ss_pred HHHHHHHHHHHHHhC
Q 015230 397 IQHTITAAEKVLRQI 411 (411)
Q Consensus 397 i~~~i~~l~~~~~~~ 411 (411)
+++++++++++++++
T Consensus 416 id~~~~~l~~~l~~~ 430 (445)
T PRK08593 416 LDTALNTIEQAFTAL 430 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988753
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=425.78 Aligned_cols=388 Identities=24% Similarity=0.319 Sum_probs=316.2
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhhCCC----
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPS---- 91 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~~---- 91 (411)
|+.+.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.. ...+..+...++++++.+..+.
T Consensus 47 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 126 (472)
T PRK08742 47 LVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGR 126 (472)
T ss_pred CeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccC
Confidence 477999999999999999999999999999999999999999999998743 2246678889999999998863
Q ss_pred --CCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCce
Q 015230 92 --IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYET 162 (411)
Q Consensus 92 --~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 162 (411)
.++++|++||+||++.||++++.+ +++.+||.+.++|||.+..++..++.......+ +...++...+..+.
T Consensus 127 ~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~ 206 (472)
T PRK08742 127 APLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDA 206 (472)
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCc
Confidence 579999999999999999999987 457899999999999999998887654322111 11111110000111
Q ss_pred eecCC---------CCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc
Q 015230 163 LTAPF---------NDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231 (411)
Q Consensus 163 ~~~~~---------~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~ 231 (411)
...+. .+++.+++.+++.++++++||+|| +++++|.+.++++|+++++++|++||+++|+||+++|| |+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRt 286 (472)
T PRK08742 207 YLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRT 286 (472)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 11111 135677788876667899999999 69999999999999999999999999999999999999 99
Q ss_pred ccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC---CCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
|.+++.+++++.||+++++|+++|| +|+|.+++++++.+.+... ....+++|++++|++|+++.++++.++++++.
T Consensus 287 G~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~ 366 (472)
T PRK08742 287 GTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVI 366 (472)
T ss_pred ccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHH
Confidence 9999999999999999999999999 5999999999998877531 23457889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCccee
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 387 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~ 387 (411)
++.++.++++++.++.+ .+++.+.++++.|+++.+++..+.... ....+....+..+.+.++++|+++.+.+ +.++
T Consensus 367 ~~~~~~g~~l~~~~~~~-~~~~~i~dvRG~Gl~~giel~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~vi~ 442 (472)
T PRK08742 367 ARNQPTAARMTQLAAQI-GEHPHVADVRQAGMVVAFELTRGGNKR--TPFPPAARVGLHAYRAALARGVVLRPLG-DVLY 442 (472)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCeeeEeccceEEEEEeccCcccc--ccCCchhHHHHHHHHHHHHCCeEEEecC-CEEE
Confidence 99999999999877765 557888999999999999996432110 0000111234678889999999998865 5665
Q ss_pred e--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 388 T--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 388 ~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+ |+++|++++++++++|++++++
T Consensus 443 ~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 443 WMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 7999999999999999999876
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=419.64 Aligned_cols=372 Identities=26% Similarity=0.364 Sum_probs=320.4
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHhhCCCCC
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIE 93 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--~~~~~~~~l~~~l~~~~~~~~ 93 (411)
...|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++..... +.++...+++++|.+..+..+
T Consensus 20 ~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~ 99 (408)
T PRK04612 20 RPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAE 99 (408)
T ss_pred CCCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCCCC
Confidence 345889999999999999999999999999999999999999999999999854332 457778899999999887668
Q ss_pred EEEEeCChHHHHHHHHHHHHhcc-------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 94 MVRFVNSGTEACMGVLRLARAFT-------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~-------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
+++|++||+||++.||++++.++ ++.+||.+.++|||.+..++..++.+.....+. .. ...+..++
T Consensus 100 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~---~~----~~~~~~~~ 172 (408)
T PRK04612 100 KVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYE---PL----PGGFRYVD 172 (408)
T ss_pred EEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCC---CC----CCCceEcC
Confidence 99999999999999999999873 356799999999999999888776533221111 01 12345678
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
++|++.+++.++ ++++++|++||+++++|++.++++|+++|+++|++||+++|+||+|+|| ++|.+++....++.||
T Consensus 173 ~~d~~~l~~~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pd 250 (408)
T PRK04612 173 FNDVEALEAAMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPD 250 (408)
T ss_pred CCCHHHHHHhhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCC
Confidence 889999999886 4689999999999999999999999999999999999999999999999 9888777667788999
Q ss_pred hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 246 ~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
++||||++++|+|+|++++++++++.+.. ..+++|++++|++++++.++++.++++++.+++++++++++++|+++.
T Consensus 251 i~t~~K~l~~G~piga~~~~~~~~~~~~~---~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~ 327 (408)
T PRK04612 251 IVTLAKALGGGFPIGAMLAGPKVAETMQF---GAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALN 327 (408)
T ss_pred EEEEcchhcCCCceEEEEECHHHHhhhcC---CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999989888887763 346678999999999999999999889999999999999999999998
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
.+++.+.++++.|+++.+++... ....+..+.+.+.++|+++.+.+.+.+|+ ++.+|++++++++++
T Consensus 328 ~~~~~i~~vrg~Gl~~~i~~~~~-----------~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~ 396 (408)
T PRK04612 328 AEFGVFAQVRGRGLMLGAVLAPA-----------HAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLAR 396 (408)
T ss_pred hhCCCeeeeeccceEEEEEecCc-----------hhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHH
Confidence 88898999999999999998531 12334678899999999998876667776 689999999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++.+
T Consensus 397 l~~~l~~ 403 (408)
T PRK04612 397 LRLALAD 403 (408)
T ss_pred HHHHHHH
Confidence 9998875
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-57 Score=427.70 Aligned_cols=389 Identities=24% Similarity=0.353 Sum_probs=312.5
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCCCC--
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPSI-- 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~-- 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.. ..+.++...++++.|.+..++.
T Consensus 21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 100 (442)
T TIGR00709 21 LPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKM 100 (442)
T ss_pred CCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCC
Confidence 58899999999999999999999999999999999999999999999998532 1256788899999999998732
Q ss_pred -CE-EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCC-
Q 015230 93 -EM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN- 168 (411)
Q Consensus 93 -~~-v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 168 (411)
.. +++++||+||++.||++++.++++.+||++.++|||.+..++.+++........ +...+............+++
T Consensus 101 ~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (442)
T TIGR00709 101 DYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI 180 (442)
T ss_pred CccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccC
Confidence 34 566799999999999999999999999999999999999998887642221111 11111111111122223222
Q ss_pred ----CH----HHHHHHHH---cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc
Q 015230 169 ----DV----SALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236 (411)
Q Consensus 169 ----d~----~~l~~~~~---~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~ 236 (411)
+. +.+++.++ ...+++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a 260 (442)
T TIGR00709 181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFA 260 (442)
T ss_pred CchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhH
Confidence 11 22344443 233679999999999999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015230 237 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316 (411)
Q Consensus 237 ~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~ 316 (411)
.+++++.||++++||++++|+|+|+++++++ ++.+. ...+++|++++|++|+++.++++.++++++.+++++++++
T Consensus 261 ~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~---~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~ 336 (442)
T TIGR00709 261 FEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQ---PAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGER 336 (442)
T ss_pred HHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccC---CCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999887 45553 2346789999999999999999999889999999999999
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCC-CCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Cccee--eecC
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGF--TSLA 391 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~--~~~~ 391 (411)
+++.|+++..+++.+.++++.|+++.+++.+.. ..+......++...+..+...++++|+++.+.+ .+.++ +|++
T Consensus 337 l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~ 416 (442)
T TIGR00709 337 ITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPIT 416 (442)
T ss_pred HHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCC
Confidence 999999998888999999999999999996532 111100011122345778899999999998754 34444 5899
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+++++++++++++++.+
T Consensus 417 it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 417 IDQEECEEGISRFKQAVEE 435 (442)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998865
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=425.07 Aligned_cols=404 Identities=21% Similarity=0.285 Sum_probs=323.7
Q ss_pred ccCcccccccCCC-CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHH
Q 015230 5 VNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENV 80 (411)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~ 80 (411)
+|+++........ .|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.+++++.. .+.+..+...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~ 99 (460)
T PRK06541 20 LWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIE 99 (460)
T ss_pred cccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHH
Confidence 4555555543322 3788999999999999999999999999999999999999999999999853 23467888899
Q ss_pred HHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc---c---CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCC
Q 015230 81 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSP 152 (411)
Q Consensus 81 l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~---~---~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 152 (411)
+++++.+..+ +.++++|++||+||++.|+++++.+ + ++.+||.+.++|||.+..++..++.......+ +...
T Consensus 100 la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 179 (460)
T PRK06541 100 LAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVP 179 (460)
T ss_pred HHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCC
Confidence 9999999887 4789999999999999999999887 2 47899999999999999998887654322111 2222
Q ss_pred CCCCCCCCceeecC-C-CC--------HHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEE
Q 015230 153 GVPKGATYETLTAP-F-ND--------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 221 (411)
Q Consensus 153 ~~~~~~~~~~~~~~-~-~d--------~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li 221 (411)
++...+....+..+ + ++ ++.+++.+++ .++++++|++||+++++|.+.++++|+++|+++|++||+++|
T Consensus 180 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI 259 (460)
T PRK06541 180 GGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLV 259 (460)
T ss_pred CcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 22211111222222 2 12 3677877764 346899999999999999999999999999999999999999
Q ss_pred Eecccccc-ccccCccccccCCCcchhhhhhhccCCc-ccccccccHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHH
Q 015230 222 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTL 298 (411)
Q Consensus 222 ~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~-~~g~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l 298 (411)
+||+|+|| |+|..++.+++++.||++++||++++|+ |+|++++++++++.+... ....+++|+.++|++++++.+.+
T Consensus 260 ~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l 339 (460)
T PRK06541 260 SDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANL 339 (460)
T ss_pred EechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHH
Confidence 99999999 9999989989999999999999999996 999999999998887643 23456779999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC--CCcchhcccchHHHHHHHHHHHHcCe
Q 015230 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV--YNFEDAKKSETTKFARFYRGMLEEGV 376 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi 376 (411)
+.+++++++++++++++++++.|+++.. ++.+.++++.|+++.+++.+... .++... .........+.+.|+++||
T Consensus 340 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi 417 (460)
T PRK06541 340 DIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETFTDD-ESERLLRGFLSPALFEAGL 417 (460)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEEEEEEecCcccccCCcch-hhhhhHHHHHHHHHHhCCe
Confidence 9998889999999999999999999865 77888899999999999964321 111000 0011122467889999999
Q ss_pred EeccC--CCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 377 YFAPS--QFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 377 ~v~~~--~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++.+. +.+.+|+ ++.+|+++|++++++|++++++
T Consensus 418 ~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 418 YCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred EEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99874 3345555 6889999999999999999875
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=425.07 Aligned_cols=387 Identities=21% Similarity=0.245 Sum_probs=315.8
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---C-CCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---F-GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~-~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++.. . .+..+...+++++|.+..+ +.
T Consensus 30 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 109 (460)
T PRK06105 30 GPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPM 109 (460)
T ss_pred CCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCC
Confidence 48899999999999999999999999999999999999999999999998532 2 2467888999999999997 57
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 165 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (411)
++++|++||+||+++|||+++.+ +++.+||.+.++|||.+..+..+++.......+ +...++..........+
T Consensus 110 ~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~ 189 (460)
T PRK06105 110 SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRF 189 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccccc
Confidence 89999999999999999998765 357899999999999998887766643222111 11111111000011111
Q ss_pred C--C--------CCHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc
Q 015230 166 P--F--------NDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233 (411)
Q Consensus 166 ~--~--------~d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~ 233 (411)
+ . .+.+++++.+.+ .++++++||+||+++++|++.++++|+++|+++|++||+++|+||+++|| |+|.
T Consensus 190 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 190 GLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 0 0 024667777753 34689999999999999999999999999999999999999999999999 9999
Q ss_pred CccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
+++.+++++.||++++||+++|| +|+|++++++++++.+... ....+++|+++||++++++.++++.++++++.+
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~ 349 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVG 349 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999988 6999999999998877532 123477899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCC--CcchhcccchHHHHHHHHHHHHcCeEeccCCCcce
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY--NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 386 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~ 386 (411)
+++++++++++.|+++ .+++.+.++++.|++..+++...... ++ .+....+..+.+.++++|+++.+.+ +.+
T Consensus 350 ~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~----~~~~~~a~~i~~~~~~~Gvl~~~~g-~~i 423 (460)
T PRK06105 350 NAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPF----EPPGKVGARANAAAHEHGVISRAMG-DTL 423 (460)
T ss_pred HHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCC----CchhHHHHHHHHHHHHCCeEEEecC-CEE
Confidence 9999999999999998 77898999999999999999643211 10 0112335678899999999998864 455
Q ss_pred ee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 387 FT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 387 ~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++ |+++|++++++++++|.+++++
T Consensus 424 ~l~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 424 AFCPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred EEECCCccCHHHHHHHHHHHHHHHHH
Confidence 54 6889999999999999999875
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=422.53 Aligned_cols=377 Identities=23% Similarity=0.310 Sum_probs=316.0
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
|+++.+++|+++||.||++|+||.+++|+.++||+||++.+|+.+++++.... .+..+...+++++|.+..| +.++
T Consensus 26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~ 105 (428)
T PRK07986 26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC 105 (428)
T ss_pred CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence 57899999999999999999999999999999999999999999999985322 2467888999999999987 5789
Q ss_pred EEEeCChHHHHHHHHHHHHhc-----cCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCce---ee
Q 015230 95 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYET---LT 164 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~---~~ 164 (411)
++|++||+||++.|+++++.+ +++.+||.+.++|||.+..++.+++... ....+ +...+......... ..
T Consensus 106 v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 185 (428)
T PRK07986 106 VFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGE 185 (428)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchh
Confidence 999999999999999999987 5678999999999999988887765321 11111 11111100000000 01
Q ss_pred cCCCCHHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC
Q 015230 165 APFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242 (411)
Q Consensus 165 ~~~~d~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~ 242 (411)
+.++|++++++.+++.++++++|++||+ ++.+|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+++.+++++
T Consensus 186 ~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv 265 (428)
T PRK07986 186 WDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGI 265 (428)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCC
Confidence 2356888999999876678999999996 8889999999999999999999999999999999999 9999999999999
Q ss_pred CcchhhhhhhccCC-cccccccccHHHHHHhcCCC--CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 243 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 243 ~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
.||++++||+++|| +|+|.+++++++++.+.... ...+++|++++|++++++.++++.+++++++++++++.+++++
T Consensus 266 ~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~ 345 (428)
T PRK07986 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLRE 345 (428)
T ss_pred CCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999 69999999999999886422 2347789999999999999999999888999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDI 397 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i 397 (411)
.|+++.. ++.+.++++.|+++.+++..+ ..+..+.+.|+++|+++.+.+ +.+++ |+++|++++
T Consensus 346 ~l~~l~~-~~~i~~vRg~Gl~~~ve~~~~-------------~~~~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei 410 (428)
T PRK07986 346 ELAPLRD-APMVADVRVLGAIGVVETTRP-------------VNMAALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQL 410 (428)
T ss_pred HHHHHhc-CCCEEeEeccceEEEEEeCCc-------------ccHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHH
Confidence 9999854 677889999999999998532 113578899999999998865 45655 799999999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|.+++++
T Consensus 411 ~~~~~~l~~~l~~ 423 (428)
T PRK07986 411 QRLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=422.42 Aligned_cols=387 Identities=23% Similarity=0.291 Sum_probs=313.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.. +++..+...+++++|.+..+ +.
T Consensus 32 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 111 (456)
T PRK07480 32 GSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGF 111 (456)
T ss_pred CCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCc
Confidence 47899999999999999999999999999999999999999999999998532 24578889999999999997 57
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 165 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (411)
++++|++||+||++.||++++.+ +++.+||.+.++|||.+..++.+++........ +...++........+..
T Consensus 112 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (456)
T PRK07480 112 NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGE 191 (456)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCccccc
Confidence 89999999999999999999887 457789999999999998887776653222111 11111111000001110
Q ss_pred -------CCCC--HHHHHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 166 -------PFND--VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 166 -------~~~d--~~~l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
++++ .+.+++.+. ..++++++||+||+++++|++.++++|+++|+++|++||+++|+||+++|| |+|.+
T Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 192 GGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 1112 356655443 345789999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCCc-ccccccccHHHHHHhc-CCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH-H
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVA-PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL-N 311 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G~-~~g~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~-~ 311 (411)
++.+++++.||+++++|+++||+ |+|.+++++++++.+. ......+++|++++|++|+++.++|+.++++++.+++ +
T Consensus 272 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~ 351 (456)
T PRK07480 272 FGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRD 351 (456)
T ss_pred hhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999994 9999999999988873 2223457889999999999999999999988999999 6
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC--CCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV--YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
++++++++.|+++ .+++.+.++++.|+++.+++.++.. .++. ........+.+.++++|+++.+.+ +.+++
T Consensus 352 ~~g~~l~~~l~~l-~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Gll~~~~~-~~l~~~ 425 (456)
T PRK07480 352 DTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATRERFE----AGGGVGTICRDHCFANGLIMRAVG-DRMIIS 425 (456)
T ss_pred HHHHHHHHHHHHh-hcCCCeeeEEeecceEEEEEeccccccccCc----chhhHHHHHHHHHHHCCcEEeecC-CEEEEE
Confidence 9999999999996 5678888999999999999964321 1100 111223577888999999998754 45444
Q ss_pred -ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 -SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++.+|+++||+++++|++++++
T Consensus 426 Ppl~it~~eid~~~~~l~~al~~ 448 (456)
T PRK07480 426 PPLVITHAEIDELVEKARKALDA 448 (456)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 7888999999999999998875
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=423.79 Aligned_cols=389 Identities=21% Similarity=0.292 Sum_probs=314.1
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCC-CCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG-APCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~-~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.+++++.. .+. ..++...+++++|.+..+ +.
T Consensus 33 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 112 (466)
T PRK07036 33 GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDL 112 (466)
T ss_pred CCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 4889999999999999999999999999999999999999999999999842 222 567888999999999987 47
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 165 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (411)
++++|++||+||++.|+++++.+ +++.+||.+.++|||.+..+....+.......+ +...++...........
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (466)
T PRK07036 113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRR 192 (466)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccccc
Confidence 89999999999999999999877 347899999999999998887776653222111 11111100000011111
Q ss_pred CCC---------CHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 166 PFN---------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 166 ~~~---------d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
+.+ ..+.+++.+.. .++++++||+||+++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 272 (466)
T PRK07036 193 PAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHF 272 (466)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchh
Confidence 111 13455666653 45789999999999999999999999999999999999999999999999 99988
Q ss_pred cccc-ccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 235 GAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 235 ~~~~-~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
++.+ ++++.||+++++|+++|| +|+|.+++++++++.+... ....+++|++++|++|+++.+.++.++++++.+
T Consensus 273 ~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~ 352 (466)
T PRK07036 273 FASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCE 352 (466)
T ss_pred hhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 8887 789999999999999999 5999999999998887532 123577899999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCccee-
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF- 387 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~- 387 (411)
+++++++++++.|+++ .+++.+.++++.|+++.+++.++.... .....+...+..+.+.++++|+++.+.+ +.++
T Consensus 353 ~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~~ve~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l 428 (466)
T PRK07036 353 HVREVGPYFEERLASL-RELPLVGDVRGDHLMACVECVADKGSK--ALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCVL 428 (466)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCEEEEEeeceEEEEEEccCcccc--CCCCchhHHHHHHHHHHHHCCcEEeecC-CEEEE
Confidence 9999999999999987 567888999999999999996532210 0001122345678899999999998765 3444
Q ss_pred -eecCCCHHHHHHHHHHHHHHHHh
Q 015230 388 -TSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 388 -~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+++|+++||+++++|++++++
T Consensus 429 ~Ppl~it~~~id~~~~~l~~al~~ 452 (466)
T PRK07036 429 SPPLIITRAQIDEIVAILRAAIEE 452 (466)
T ss_pred eCCCcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988865
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=421.76 Aligned_cols=382 Identities=23% Similarity=0.299 Sum_probs=312.9
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--C-CCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--G-APCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~-~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++... . +.++...++++.|.+..+ +.+
T Consensus 35 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 114 (457)
T PRK05639 35 FPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENP 114 (457)
T ss_pred CCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcC
Confidence 489999999999999999999999999999999999999999999999985322 2 335777899999999987 458
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceeecC-----
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAP----- 166 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~----- 166 (411)
+++|++||+||++.|+++++.++++.+||.+.++|||.+..++.+.+... ....+ +...++...+..+....+
T Consensus 115 ~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 194 (457)
T PRK05639 115 KVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGING 194 (457)
T ss_pred EEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccc
Confidence 99999999999999999999999999999999999999999887766421 11111 111111000000000000
Q ss_pred CCCH--------HHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 167 FNDV--------SALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 167 ~~d~--------~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
+.+. +.+++.+.. .++++++||+||+++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.+
T Consensus 195 ~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~ 274 (457)
T PRK05639 195 YEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKW 274 (457)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchH
Confidence 1122 234444422 25789999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 314 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~ 314 (411)
++.+++++.||++++||+++||+|+|++++++++++. .. ..+.+|+.++|++++++.++++.++++++.++.++++
T Consensus 275 ~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~~-~~---~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g 350 (457)
T PRK05639 275 FASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDL-TS---GSALLTPAANPVISAAAEATLEIIEEENLLKNALKVG 350 (457)
T ss_pred HHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHhh-cC---CCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 8999999999999999999999999999999999883 21 1245699999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ec
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SL 390 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~ 390 (411)
+++++.|+++..+++.+.++++.|+++.+++..+.. .++...+..+.+.++++|+++.+.+ .+.+|+ |+
T Consensus 351 ~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~-------~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl 423 (457)
T PRK05639 351 EFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENG-------KPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPL 423 (457)
T ss_pred HHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCC-------CCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCC
Confidence 999999999988889999999999999999964321 1233455788999999999998764 345655 79
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|++++|+++++|++++++
T Consensus 424 ~it~~~id~~~~~l~~~l~~ 443 (457)
T PRK05639 424 VITKEIAEKGLEIMERAIKD 443 (457)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-56 Score=420.81 Aligned_cols=390 Identities=23% Similarity=0.288 Sum_probs=317.8
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.| ++.+++|+++||.||++|+||.+++++.++||+||+|.+++.++++++... .+..+...++++.|.+..+ ..+
T Consensus 14 ~p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 92 (447)
T PRK06917 14 YP-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLN 92 (447)
T ss_pred CC-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 35 589999999999999999999999999999999999999999999985322 2567888999999999987 458
Q ss_pred EEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeec-
Q 015230 94 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA- 165 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~- 165 (411)
+++|++||+||++.|+++++.+ +++.+|+.+.++|||++..++.+++.......+ +...++...........
T Consensus 93 ~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (447)
T PRK06917 93 WSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCP 172 (447)
T ss_pred EEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccc
Confidence 9999999999999999999765 567899999999999999998877653222111 11111110000011111
Q ss_pred --------CCCCHHHHHHHHHcCC-CcEEEEEEcccCCC-CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 166 --------PFNDVSALENLFENNK-GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 166 --------~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~-~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
..++.+.+++.++++. +++++|++||++++ +|++.++++|+++|+++|++||+++|+||+++|| |+|.+
T Consensus 173 ~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~ 252 (447)
T PRK06917 173 VQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAM 252 (447)
T ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccch
Confidence 1224577788887643 57999999999985 7799999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCCc-ccccccccHHHHHHhcCCC-CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G~-~~g~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
++.+++++.||++++||++++|+ |+|++++++++++.+.... ...+++|++++|++++++.++++.++++++.+++++
T Consensus 253 ~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~ 332 (447)
T PRK06917 253 FAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAE 332 (447)
T ss_pred hhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 99999999999999999999995 9999999999988876432 345678999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Ccc
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEA 385 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~ 385 (411)
+++++++.|+++..+++.+.++++.|+++.+++..+.... ....++......+.+.++++||++.+.+ .+.
T Consensus 333 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~ 410 (447)
T PRK06917 333 KGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTK--QPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDA 410 (447)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcC--CCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCE
Confidence 9999999999998888999999999999999996432210 0000122346788899999999998752 234
Q ss_pred eee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 386 GFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 386 ~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++ |+++|+++|++++++|++++++
T Consensus 411 i~l~Ppl~it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 411 VIIAPPMTITYSELDELLSIFAKSVEE 437 (447)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 554 7899999999999999999875
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-56 Score=422.11 Aligned_cols=391 Identities=23% Similarity=0.264 Sum_probs=312.0
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++.. +++..+...+++++|.+..+ ..
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 115 (460)
T PRK12403 36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHY 115 (460)
T ss_pred CCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCc
Confidence 47899999999999999999999999999999999999999999999998532 23457888999999999997 46
Q ss_pred CEEEEeCChHHHHHHHHHHHHhcc---C---CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeec-
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFT---G---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA- 165 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~---~---~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (411)
++++|++||+||++.||++++.+. + +..|+.+..+|||++..++.+++........+...++...+....+..
T Consensus 116 ~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (460)
T PRK12403 116 SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANG 195 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccc
Confidence 899999999999999999998772 2 356788999999999888887765422211111111110000001110
Q ss_pred ------CCC--CHHHHHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc
Q 015230 166 ------PFN--DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235 (411)
Q Consensus 166 ------~~~--d~~~l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~ 235 (411)
+++ +.+++++.+. ..++++++|++||+++++|.+.++++|+++|+++|++||+++|+|||++|| |+|.++
T Consensus 196 ~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 196 GELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 011 1355665554 344689999999999999999999999999999999999999999999999 999999
Q ss_pred cccccCCCcchhhhhhhccCCc-ccccccccHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH-H
Q 015230 236 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-K 312 (411)
Q Consensus 236 ~~~~~~~~~d~~~~sK~~~~G~-~~g~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~-~ 312 (411)
+.+++++.||+++++|+++||+ |+|.+++++++.+.+... ....+++|++++|++|+++.++|+.++++++.++++ +
T Consensus 276 a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~ 355 (460)
T PRK12403 276 AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDD 355 (460)
T ss_pred hhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999999999995 999999999998887532 233477899999999999999999998888999996 9
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCccee--eec
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSL 390 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~~~ 390 (411)
+.+++++.|+++..+++.+.++++.|+++.+++......... ..........+.+.+.++|+++.+.+ +.++ +|+
T Consensus 356 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Gll~~~~~-~~~~l~Ppl 432 (460)
T PRK12403 356 TGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKR--FANENDLAWRCRTIGFEEGVIIRSTL-GRMIMAPAL 432 (460)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCcccccc--ccchhHHHHHHHHHHHhCCEEEEecC-CEEEEECCC
Confidence 999999999999888899999999999999999643211100 00011224456778899999998654 2344 478
Q ss_pred CCCHHHHHHHHHHHHHHHHhC
Q 015230 391 AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++|++++++++++|+++++++
T Consensus 433 ~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 433 VAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=417.64 Aligned_cols=370 Identities=29% Similarity=0.402 Sum_probs=319.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.||++|+||.++++++++||+||++.+++.++++++. ...+..+...++++.|++.. +.++
T Consensus 16 ~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~-~~~~ 94 (397)
T TIGR03246 16 PAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDAT-FADK 94 (397)
T ss_pred CCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCE
Confidence 45889999999999999999999999999999999999999999999999843 23456778899999999987 4579
Q ss_pred EEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
++|++||++|++.||++++.++ ++.+||.++.+|||++..++..++.......+ .. ....+..++++
T Consensus 95 ~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~ 167 (397)
T TIGR03246 95 VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGF------AP-LPGGIKHAPYN 167 (397)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCC------CC-CCCceEEeCCC
Confidence 9999999999999999998774 67899999999999998877776653222111 00 12346678999
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++++++.++ +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+++.+++++.||++
T Consensus 168 d~~~l~~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~ 244 (397)
T TIGR03246 168 DLAAAKALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL 244 (397)
T ss_pred CHHHHHHHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE
Confidence 9999999886 469999999999999999999999999999999999999999999999 999888888899999999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
++||++++|+|+|++++++++++.+.. ..+++|++++|++++++.++++.++.++++++++++.+++++.|+++..+
T Consensus 245 t~~K~lggG~pigav~~~~~i~~~~~~---~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~ 321 (397)
T TIGR03246 245 TSAKALGGGFPIGAMLTTTEIAAHLKV---GTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINAR 321 (397)
T ss_pred EeehhhhCCcceeEEEEcHHHHHhccC---CCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999989999999999999888863 34567899999999999999999877889999999999999999998777
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 405 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~ 405 (411)
++...++++.|.++.+++.+. .......+++.|.++|+++.+.+.+.+|+ ++.+|++++++++++|+
T Consensus 322 ~~~~~~vrg~G~~~~i~~~~~-----------~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~ 390 (397)
T TIGR03246 322 YNVFSEIRGKGLLIGAVLTEA-----------YQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFE 390 (397)
T ss_pred CCCeEeeecCceEEEEEEcCc-----------hhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 777788899999999988431 11245788999999999998876667777 79999999999999999
Q ss_pred HHHHhC
Q 015230 406 KVLRQI 411 (411)
Q Consensus 406 ~~~~~~ 411 (411)
+++.++
T Consensus 391 ~~l~~~ 396 (397)
T TIGR03246 391 RAIEQV 396 (397)
T ss_pred HHHHHh
Confidence 998763
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=417.42 Aligned_cols=374 Identities=29% Similarity=0.461 Sum_probs=315.3
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC--CCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP--SIE 93 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~--~~~ 93 (411)
|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.... ++.+...++++++.+..+ +.+
T Consensus 23 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (421)
T PRK06777 23 DFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPA 102 (421)
T ss_pred CeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCc
Confidence 789999999999999999999999999999999999999999999999864322 356778899999999886 368
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCC-CCCCCCCCCCCCceeecCCC---
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETLTAPFN--- 168 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 168 (411)
+++|++||+||++.|+++++.++++.+|+.+.++|||.+..++.+++.. .....+ +...+ +..++++
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~--------~~~~~~p~~~ 174 (421)
T PRK06777 103 KTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGS--------IFHALYPNEL 174 (421)
T ss_pred eEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCC--------cEEcCCCccc
Confidence 9999999999999999999999999999999999999999988877642 121111 11111 1122211
Q ss_pred -------CHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 169 -------DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 169 -------d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
+++.+++.+++ .++++++|++||+++++|...++++|+++|+++|++||+++|+||+|+|| ++|.+++.+
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~ 254 (421)
T PRK06777 175 HGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAME 254 (421)
T ss_pred cCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhh
Confidence 36678888864 45789999999999999999999999999999999999999999999999 999888888
Q ss_pred ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
++++.||++++||++++|+|+||+++++++++.+.. ..+++|+++++++++++.++++.+++++++++++++.++++
T Consensus 255 ~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~ 331 (421)
T PRK06777 255 YYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAP---GGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLV 331 (421)
T ss_pred hcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCC---CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 889999999999999999999999999999888763 23667999999999999999999888899999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCCCH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSS 394 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~t~ 394 (411)
+.|+++..+++.+..+++.|+++.+++...... .+....+..+.+.++++||++.+++. +.+|+ |+++|+
T Consensus 332 ~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~------~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~ 405 (421)
T PRK06777 332 EVLEKAKASCPAIVDIRARGSMVAVEFNDPQTG------KPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPD 405 (421)
T ss_pred HHHHHHHHhCCCeEEecCceEEEEEEEecCccC------CccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCH
Confidence 999999888888888999999999988542110 12333456778888999999998752 45666 678999
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 395 DDIQHTITAAEKVLR 409 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~ 409 (411)
+++++++++|++++.
T Consensus 406 ~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 406 AQFSKALNILTRLLA 420 (421)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998874
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=418.15 Aligned_cols=384 Identities=25% Similarity=0.332 Sum_probs=314.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.. .++..++...+++++|.+..+ +.+
T Consensus 28 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 107 (442)
T PRK13360 28 APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLN 107 (442)
T ss_pred CCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCC
Confidence 4889999999999999999999999999999999999999999999999843 234567888999999999987 578
Q ss_pred EEEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCC-ceeec
Q 015230 94 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATY-ETLTA 165 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~-~~~~~ 165 (411)
+++|++||+||++.|+++++.++ ++.+||++.++|||.+..++.+++.......+ +...+....+.. .....
T Consensus 108 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~ 187 (442)
T PRK13360 108 HVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARN 187 (442)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhcc
Confidence 99999999999999999999874 46789999999999998888877754332211 111111000000 00111
Q ss_pred CCC---------CHHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 166 PFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 166 ~~~---------d~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
++. +.+++++.++.. ++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+
T Consensus 188 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~ 267 (442)
T PRK13360 188 AFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAP 267 (442)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 110 246778888653 4689999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCC----CcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
++.+++++.||++++||++++| +|+|.+++++++++.+.... ..++++|++++|++++++.++++.++++++.++
T Consensus 268 ~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~ 347 (442)
T PRK13360 268 FAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTR 347 (442)
T ss_pred hhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999988 79999999999988775321 234678999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
++++.+++++.|+++. +++.+.++++.|++..+++..... .....+..+.+.|.++||++.+.+ +.+|+
T Consensus 348 ~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~~~~l~~~~~--------~~~~~~~~~~~~l~~~Gvl~~~~~-~~lr~~ 417 (442)
T PRK13360 348 AARLAPYWEDALHSLR-DAPHVIDIRNLGLVGAVELAPRDG--------KPGKRAYEVFLKCFEKGLMIRYTG-DILALS 417 (442)
T ss_pred HHHHHHHHHHHHHHhh-cCCCeeeeeccceEEEEEEecCCC--------CcchhHHHHHHHHHHCCcEEEecC-CEEEEe
Confidence 9999999999999874 367778899999999988854221 112234678888999999998765 44555
Q ss_pred -ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 -SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++.+|++++|+++++|+++++++
T Consensus 418 Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 418 PPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999998764
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=418.58 Aligned_cols=383 Identities=28% Similarity=0.370 Sum_probs=317.2
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.... .+..+...+++++|.+..+ +.+.
T Consensus 26 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~ 105 (433)
T PRK08117 26 NLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDC 105 (433)
T ss_pred CceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence 48999999999999999999999999999999999999999999999985322 2467888999999999995 6789
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCC-CCCCCCCCCCCCcee---------
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETL--------- 163 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~--------- 163 (411)
++|++||+||++.||++++.++++.+||.++++|||++..++.+.+.. ...... +...++...+.....
T Consensus 106 v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (433)
T PRK08117 106 FFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPE 185 (433)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchh
Confidence 999999999999999999999999999999999999999987766531 111111 111111000000000
Q ss_pred ecCCCCHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc
Q 015230 164 TAPFNDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240 (411)
Q Consensus 164 ~~~~~d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~ 240 (411)
....++++++++.+++ .++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|..++.+++
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~ 265 (433)
T PRK08117 186 VCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTF 265 (433)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhc
Confidence 1112367778888764 34689999999999999999999999999999999999999999999999 99988777888
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.. ..+++|++++|++++++.++++.++.++++++++++.++++++
T Consensus 266 gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~---~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~ 342 (433)
T PRK08117 266 GVVPDIMTIAKGIASGLPLSAVVASKELMEQWPL---GSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALER 342 (433)
T ss_pred CCCCCEeehhhhccCCCcceeEEEcHHHHhhccC---CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888753 3467789999999999999999998788999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDD 396 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~~ 396 (411)
|+++..+++.+.++++.|+++++++.+++. .++......+.+.+.++||++.+.+ .+.+|+ ++++|+++
T Consensus 343 L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~-------~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~ 415 (433)
T PRK08117 343 LEVLKEKHPVIGDVRGIGLMIGIEIVDPDG-------EPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEE 415 (433)
T ss_pred HHHHHhcCCceeeeecCCcEEEEEEecCCC-------CcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHH
Confidence 999887788888899999999999965421 1233456788899999999987643 245665 58999999
Q ss_pred HHHHHHHHHHHHHhC
Q 015230 397 IQHTITAAEKVLRQI 411 (411)
Q Consensus 397 i~~~i~~l~~~~~~~ 411 (411)
|++++++|.++++++
T Consensus 416 i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 416 IDEGLDILDEALTEY 430 (433)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=416.25 Aligned_cols=375 Identities=26% Similarity=0.409 Sum_probs=316.4
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC--CCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--SIE 93 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~--~~~ 93 (411)
|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++... .+.++...++++.|.+..+ +.+
T Consensus 23 ~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (421)
T PRK09792 23 NFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA 102 (421)
T ss_pred CeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCc
Confidence 78999999999999999999999999999999999999999999999985432 2357778899999999886 347
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCC-----
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPF----- 167 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (411)
+++|++||+||++.|+++++.++++.+|+++.++|||.+..++..++.. .....+... + ..+..++.
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~---~----~~~~~v~~p~~~~ 175 (421)
T PRK09792 103 KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPF---P----GSVYHVPYPSDLH 175 (421)
T ss_pred eEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCC---C----CCcEEcCCCcccc
Confidence 9999999999999999999999999999999999999999988876642 122111100 0 11222222
Q ss_pred -----CCHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 168 -----NDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 168 -----~d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
++++.+++.+++ .++++++|++||+++++|...++++|+++|+++|++||+++|+||+++|| ++|.+++.++
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~ 255 (421)
T PRK09792 176 GISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDH 255 (421)
T ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHh
Confidence 245788888874 24679999999999999999999999999999999999999999999999 9998888888
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.||++|+||++++|+|+|++++++++++.+.. ..+++|+.+++++|+++.+.++.++++++.++++++.+++++
T Consensus 256 ~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~ 332 (421)
T PRK09792 256 YADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAP---GGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKN 332 (421)
T ss_pred cCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999888763 346789999999999999999999888899999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSD 395 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~ 395 (411)
.|+++..+++.+..+++.|+++++++.+.+.. .+.......+.+.+.++||++.+.+ .+.+|+ +++++++
T Consensus 333 ~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~------~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ 406 (421)
T PRK09792 333 TLIDAKESVPAIAAVRGLGSMIAAEFNDPQTG------EPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDA 406 (421)
T ss_pred HHHHHHHhCCCcceecccceEEEEEecCCccC------CcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHH
Confidence 99999888888889999999999999643211 1223456789999999999997543 245555 6779999
Q ss_pred HHHHHHHHHHHHHH
Q 015230 396 DIQHTITAAEKVLR 409 (411)
Q Consensus 396 ~i~~~i~~l~~~~~ 409 (411)
++++++++|.++++
T Consensus 407 ei~~~~~~l~~~l~ 420 (421)
T PRK09792 407 QFDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999885
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=417.06 Aligned_cols=386 Identities=27% Similarity=0.397 Sum_probs=317.8
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC-CC
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~-~~ 92 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++.... +.++...++++.|.+..+ ..
T Consensus 22 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~ 101 (443)
T PRK08360 22 YYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDN 101 (443)
T ss_pred cCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCC
Confidence 34889999999999999999999999999999999999999999999999864332 346778999999999987 45
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCCCCCCCCCCCCCCceeecCC----
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF---- 167 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~---- 167 (411)
++++|++||+||++.||++++.++++.+|+.+.++|||.+..++...+... .........+.......+....++
T Consensus 102 ~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (443)
T PRK08360 102 PKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEP 181 (443)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCch
Confidence 899999999999999999999999999999999999999988887766321 111110011110000011111111
Q ss_pred -----CCHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 168 -----NDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 168 -----~d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
++.+.+++.+++ .++++++|++||+++++|.+.++++|+++|.++|++||+++|+||+|+|| ++|.+++.++
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~ 261 (443)
T PRK08360 182 GSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEH 261 (443)
T ss_pred hhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhh
Confidence 234556677764 34689999999999999999999999999999999999999999999999 9998777777
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.||++++||++++|+|+|++++++++++.+.. ..+.+|+.+++++++++.++++.++++++.++++++++++++
T Consensus 262 ~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~ 338 (443)
T PRK08360 262 FGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPP---LAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKK 338 (443)
T ss_pred cCCCCCEEEecccccCCceeEEEEEcHHHHhhhcC---CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999888863 336679999999999999999999888899999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDI 397 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i 397 (411)
.|+++..+++.+.++++.|+++.+++.+.... +.++...+..+.+.|+++|+++.+...+.+|+ ++++|++++
T Consensus 339 ~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~-----~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~i 413 (443)
T PRK08360 339 RLEEMKKKHELIGDVRGIGLMIGVDLVKDRET-----KERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVL 413 (443)
T ss_pred HHHHHHHhCCCeeeeeccceEEEEEEecCCcc-----cCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHH
Confidence 99999888888889999999999999643210 11233445788899999999998765566666 899999999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
+++++++++++++
T Consensus 414 d~~~~~l~~~l~~ 426 (443)
T PRK08360 414 DEGLDILEEAIED 426 (443)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=417.61 Aligned_cols=385 Identities=26% Similarity=0.356 Sum_probs=314.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhhCC-CC
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.. ...+..+...+++++|.+..+ +.
T Consensus 30 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~ 109 (445)
T PRK09221 30 AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGL 109 (445)
T ss_pred CCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 35889999999999999999999999999999999999999999999999843 223567888899999999987 57
Q ss_pred CEEEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCc-eee
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYE-TLT 164 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~ 164 (411)
++++|++||+||++.|+++++.++ ++.+||.+.++|||.+..++..++.......+ +...++....... ...
T Consensus 110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (445)
T PRK09221 110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPE 189 (445)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccc
Confidence 899999999999999999998774 36789999999999999888777653222111 1111111000000 111
Q ss_pred cCCC---------CHHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc
Q 015230 165 APFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233 (411)
Q Consensus 165 ~~~~---------d~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~ 233 (411)
.++. +.+++++.+++. .+++++|++||+++++|++.++++|+++|+++|++||+++|+||+|+|| |+|.
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~ 269 (445)
T PRK09221 190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269 (445)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch
Confidence 0010 145778888754 3689999999999999999999999999999999999999999999999 9999
Q ss_pred CccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCC----CcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
+++.+++++.||++++||++++| +|+|.+++++++++.+.... ...+++|++++|++++++.++++.++++++.+
T Consensus 270 ~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~ 349 (445)
T PRK09221 270 AFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFE 349 (445)
T ss_pred hhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999988 79999999999988875321 23467899999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 388 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~ 388 (411)
+++++++++++.|+++. .++.+.++++.|++..+++..... .....+..+.+.++++||++.+.+ +.+|+
T Consensus 350 ~~~~~g~~l~~~l~~l~-~~~~v~~vrg~Gl~~~v~~~~~~~--------~~~~~~~~~~~~~~~~Gv~~~~~~-~~lr~ 419 (445)
T PRK09221 350 RAAELAPYFEDAVHSLK-GLPHVIDIRNIGLVAGIELAPRPG--------APGARGYEAFMKCFEKGLLVRYTG-DTIAL 419 (445)
T ss_pred HHHHHHHHHHHHHHhhc-cCCCEEEEecCceEEEEEEecccc--------cccchHHHHHHHHHHCCeEEeecC-CEEEE
Confidence 99999999999999884 467778899999999999864211 111234578899999999998765 45665
Q ss_pred --ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 --SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 --~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++++|++++++++++|++++.++
T Consensus 420 ~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 420 SPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999998764
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-55 Score=415.05 Aligned_cols=383 Identities=25% Similarity=0.347 Sum_probs=315.6
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC--CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP--SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~--~~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++.... .+.+...+++++|.+..+ +.
T Consensus 15 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 94 (420)
T TIGR00700 15 LPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGP 94 (420)
T ss_pred CCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999999854322 446678899999999887 35
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCC-CCCCCCCCCCCCcee-------
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETL------- 163 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~------- 163 (411)
++++|++||+||++.|+++++.++++.+||.+.++|||.+..++.+++.. .....+ +...+....+.....
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 79999999999999999999999999999999999999999998776642 111111 111111000000000
Q ss_pred ecCCC-CHHHHHHHHH--cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 164 TAPFN-DVSALENLFE--NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 164 ~~~~~-d~~~l~~~~~--~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
..+.+ +++.+++.+. ..++++++||+||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|.++.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~ 254 (420)
T TIGR00700 175 QLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEH 254 (420)
T ss_pred chhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhh
Confidence 01111 2567777764 345789999999999999999999999999999999999999999999999 9998888888
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.||++++||++++|+|+||+++++++++.+.. ..+++|+++++++++++.++++.++++++.+++++..+++++
T Consensus 255 ~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~ 331 (420)
T TIGR00700 255 EGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAP---GGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTD 331 (420)
T ss_pred cCCCCCEEEeeccccCCcceEEEEecHHHHhhcCC---CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999888763 346779999999999999999998888999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSD 395 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~ 395 (411)
+|+++...++.+..+++.|+++++++.+... ..++...+..+.+.+.++||++.|++ .+.+|+ +++++++
T Consensus 332 ~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~------~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~ 405 (420)
T TIGR00700 332 RLTTLKAVDPRIGDVRGLGAMIAVELVDPGT------TEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDE 405 (420)
T ss_pred HHHHHHhhCCCEEEeeccceEEEEEEecCCC------CCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHH
Confidence 9999988788888899999999999854211 11344456788888899999999864 245666 4568999
Q ss_pred HHHHHHHHHHHHHH
Q 015230 396 DIQHTITAAEKVLR 409 (411)
Q Consensus 396 ~i~~~i~~l~~~~~ 409 (411)
++++++++|.++++
T Consensus 406 ~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 406 LLSEGLDILCAILA 419 (420)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=417.34 Aligned_cols=382 Identities=30% Similarity=0.443 Sum_probs=317.8
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC--CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~--~~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++... .+.++...++++.|.+..+ ..
T Consensus 36 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~ 115 (441)
T PRK05769 36 YPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFE 115 (441)
T ss_pred CCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCC
Confidence 588999999999999999999999999999999999999999999999985432 2457888999999999987 36
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceeecCCC--
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPFN-- 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-- 168 (411)
++++|++||+||++.|+++++.++++.+|+.+.++|||.+..++.+++... ....+ +...++........+..+++
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIE 195 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCC
Confidence 899999999999999999999999999999999999999999887765422 22111 22223322222223333333
Q ss_pred C--------HHHHHH-HHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc
Q 015230 169 D--------VSALEN-LFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236 (411)
Q Consensus 169 d--------~~~l~~-~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~ 236 (411)
+ .+.+++ .+++ .++++++|++||+++++|.+.++++|+++|.++|++||+++|+||+|+|| ++|.+++
T Consensus 196 ~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a 275 (441)
T PRK05769 196 NPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFA 275 (441)
T ss_pred chHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceeh
Confidence 1 334555 3332 35689999999999999999999999999999999999999999999999 9998888
Q ss_pred ccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015230 237 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316 (411)
Q Consensus 237 ~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~ 316 (411)
.+++++.||++++||++++|+|+|++++++++++.+. ..+++|++++|++++++.++++.+++ ++.+++++++++
T Consensus 276 ~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~~----~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~ 350 (441)
T PRK05769 276 IEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLPP----GSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEY 350 (441)
T ss_pred hhccCCCCCEEEEcccccCCcccEEEEEehhhhhcCC----CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8889999999999999999999999999988875332 34678999999999999999999988 999999999999
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCH
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSS 394 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~ 394 (411)
+++.|+++..+++.+.++++.|+++.+++.+.. ..+.......+.+.++++||++.+.+.+.+++ ++++|+
T Consensus 351 l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~ 423 (441)
T PRK05769 351 LRKELKELKEKYEFIGDVRGLGLMIGVELVKDR-------KEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITE 423 (441)
T ss_pred HHHHHHHHHHhCCCeeeeecceEEEEEEeccCC-------ccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCH
Confidence 999999998888888899999999999995432 01233445778889999999998876566655 688999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 015230 395 DDIQHTITAAEKVLRQI 411 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~~ 411 (411)
+||+++++++++++.++
T Consensus 424 ~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 424 EEADIGLEILEEAIKEL 440 (441)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998763
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=380.65 Aligned_cols=370 Identities=27% Similarity=0.365 Sum_probs=323.8
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCCEEE
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVR 96 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~ 96 (411)
|+++.+++|+++||.+|++|+||++.+++.+-||+||.+.+++.++.++... -.+..+...++++.+.+.+ +.+.++
T Consensus 42 pvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf-~~~kvl 120 (427)
T KOG1402|consen 42 PVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLF-GYDKVL 120 (427)
T ss_pred ceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhc-Ccceee
Confidence 8899999999999999999999999999999999999999999999998532 2355777788899888888 788999
Q ss_pred EeCChHHHHHHHHHHHHhcc--------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 97 FVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 97 ~~~~g~~a~~~al~~~~~~~--------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
-+|+|.||++.|++++|... .+.+++...+.|||.+.++..+++++--+ .++-......+..+|++
T Consensus 121 pmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~------~~fgp~~P~~~~~v~Y~ 194 (427)
T KOG1402|consen 121 PMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSW------DGFGPFLPGVVDKVPYG 194 (427)
T ss_pred ecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchh------hccCCCCCCcceeeccC
Confidence 99999999999999998431 23467778899999999998888774222 12211112236678999
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|.++++.+++. .++++|++||.+++.|++.|++.|+++++++|.||++++|.||+|+|+ |+|++.+.++..+.||++
T Consensus 195 d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDiv 272 (427)
T KOG1402|consen 195 DAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIV 272 (427)
T ss_pred CHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeE
Confidence 99999999985 689999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 015230 248 TLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 248 ~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
.|+|+++|| +|++.+.++++++-.+. +.-|++|+++||++++++.++++.+.++++.++..+++..++.+|+++..
T Consensus 273 ilgKalSGG~~Pvsavl~~~~im~~~~---pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~ 349 (427)
T KOG1402|consen 273 ILGKALSGGVYPVSAVLADDDIMLNIK---PGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQK 349 (427)
T ss_pred EEeccccCCeeeeEEEEecHHHHhccC---CCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999 89999999999988877 45699999999999999999999999999999999999999999999988
Q ss_pred hcC-CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 327 KAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 327 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
+.| ....++++|++..+++...+. ...++..++-.++++|++..|-..+-+|+ |+.++++|+++.+++
T Consensus 350 ~~p~~v~~VRGrGl~~ai~i~~~~~---------~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~ 420 (427)
T KOG1402|consen 350 KFPHVVKEVRGRGLLNAIVINPSKT---------SGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEA 420 (427)
T ss_pred cccchhheeeccceEEEEEeccccc---------cchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHH
Confidence 776 567899999999999864321 23556788999999999999988777776 799999999999999
Q ss_pred HHHHHH
Q 015230 404 AEKVLR 409 (411)
Q Consensus 404 l~~~~~ 409 (411)
+.+++.
T Consensus 421 i~k~i~ 426 (427)
T KOG1402|consen 421 IEKTIA 426 (427)
T ss_pred HHHHhc
Confidence 998764
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=416.56 Aligned_cols=383 Identities=22% Similarity=0.297 Sum_probs=314.5
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
.|+++.+++|+++||.||++|+||.++ ++.++||+||++.+++.+++++.... .+..+...+++++|.+..+ ..++
T Consensus 54 ~~~~i~~a~G~~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 132 (459)
T PRK06082 54 CLDVLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNR 132 (459)
T ss_pred CCceEEeeeeeEEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCE
Confidence 478999999999999999999999855 77899999999999999999985322 3568889999999999997 4689
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCCC----
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND---- 169 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d---- 169 (411)
++|++||+||++.|+++++.++++.+|+.+.++|||.+..++.+++.......+ +...++...+.......++++
T Consensus 133 v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (459)
T PRK06082 133 VLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGS 212 (459)
T ss_pred EEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHH
Confidence 999999999999999999999999999999999999998888777653332211 222222111112222333333
Q ss_pred ----HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCc
Q 015230 170 ----VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244 (411)
Q Consensus 170 ----~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~ 244 (411)
++.+++.+++. +++++||+||++++ |.+.++++|+++|+++|++||+++|+||+++|| |+|.+++.+++++.|
T Consensus 213 ~~~~~~~l~~~i~~~-~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~P 290 (459)
T PRK06082 213 DVHYADYLEYVIEKE-GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEP 290 (459)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCC
Confidence 35577777653 57999999999987 477889999999999999999999999999999 999999999999999
Q ss_pred chhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015230 245 DLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 245 d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (411)
|++++||+++|| +|+|.+++++++.+.+.. ...+ +|++++|++++++.+.++.+++++++++++++++++++.|++
T Consensus 291 Div~~gKgl~gG~~P~~av~~~~~i~~~~~~--~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~ 367 (459)
T PRK06082 291 DILCIGKGLGGGLVPIAAMITKDKYNTAAQI--SLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLE 367 (459)
T ss_pred CEEEecccccCCCCcceEEEEcHHHHhhccC--CCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999998 599999999887654421 2224 699999999999999999998889999999999999999999
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTI 401 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i 401 (411)
+..+++.+.++++.|+++.+++..+... ..+....+..+...+.++|+++.+.+.+.+++ |+++|+++|++++
T Consensus 368 l~~~~~~i~~vrG~Gl~~~ve~~~~~~~-----~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~ 442 (459)
T PRK06082 368 MKAKYPLIGDVRGIGLLWGVELVTDRHT-----KERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQAL 442 (459)
T ss_pred HHhhCCCeeeeeeccceeEEEEccCccc-----cCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHH
Confidence 9888899999999999999999643211 11222345678889999999998865566655 6899999999999
Q ss_pred HHHHHHHHhC
Q 015230 402 TAAEKVLRQI 411 (411)
Q Consensus 402 ~~l~~~~~~~ 411 (411)
+++++++.++
T Consensus 443 ~~l~~~l~~~ 452 (459)
T PRK06082 443 AILEEAIAKI 452 (459)
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-55 Score=416.04 Aligned_cols=377 Identities=27% Similarity=0.381 Sum_probs=319.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--C-CCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~-~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++.. + .++++...++++.|.+..+ +.+
T Consensus 24 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 103 (423)
T PRK05964 24 PPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLD 103 (423)
T ss_pred CCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 58899999999999999999999999999999999999999999999998542 2 4567888999999999987 578
Q ss_pred EEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 94 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+++|++||+||++.|++++|.+ +++.+||.+.++|||.+..++.+.+........ .+.. .....+.+++
T Consensus 104 ~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~---~~~~--~~~~~~~~~~ 178 (423)
T PRK05964 104 HVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALY---TPLL--FEQVTAPFPP 178 (423)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccc---cCcC--CCCEEeCCCc
Confidence 9999999999999999999887 578899999999999999988777654322111 1111 1123344555
Q ss_pred CC-----HHHHHHHHHcCCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc
Q 015230 168 ND-----VSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240 (411)
Q Consensus 168 ~d-----~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~ 240 (411)
+| ++.+++.++++++++++|++|| +++++|...++++|+++|+++|++||+++|+||+|+|| ++|.+++.+++
T Consensus 179 ~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~ 258 (423)
T PRK05964 179 DGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQA 258 (423)
T ss_pred chhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhc
Confidence 56 8888888887667899999999 68889999999999999999999999999999999999 99988888889
Q ss_pred CCCcchhhhhhhccCC-cccccccccHHHHHHhcCC---CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~ 316 (411)
++.||++++||+++|| +|+|++++++++.+.+... ....+++|+++++++++++.++++.++.+++.++++++.++
T Consensus 259 ~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~ 338 (423)
T PRK05964 259 GVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAG 338 (423)
T ss_pred CCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999987 8999999999999887531 23457789999999999999999999888899999999999
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCH
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSS 394 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~ 394 (411)
+++.|+++. .++.+.++++.|+++.+++.+.+ .......+.+.|.++||++.+.+ +.+|+ ++++|+
T Consensus 339 l~~~l~~l~-~~~~i~~vrg~Gl~~~i~l~~~~----------~~~~~~~l~~~l~~~Gv~v~~~~-~~lR~~p~l~~t~ 406 (423)
T PRK05964 339 LAEGLEPFR-DLPGVADVRVLGAIGAVELDRPV----------LERDGPALRAFALERGVLLRPLG-NTIYLMPPYIITA 406 (423)
T ss_pred HHHHHHhhc-cCCCeEEeecccEEEEEEeccCc----------chhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCH
Confidence 999999874 45666678899999999985421 01234678899999999998865 45665 678999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 015230 395 DDIQHTITAAEKVLRQI 411 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~~ 411 (411)
+|||+++++|+++++++
T Consensus 407 edId~~v~~l~~al~~~ 423 (423)
T PRK05964 407 EELDRITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999875
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-55 Score=413.73 Aligned_cols=369 Identities=25% Similarity=0.355 Sum_probs=316.7
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.||++|+||.++++++++||+||++.+|+.+++++.. ...+..+...++++.+++.. +.++
T Consensus 20 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~ 98 (406)
T PRK12381 20 PAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FADR 98 (406)
T ss_pred CCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhC-CCCe
Confidence 45789999999999999999999999999999999999999999999998742 22345777889999999887 5689
Q ss_pred EEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
++|++||+||++.|+++++.++ ++.+|+.++++|||.+..+..+++....... .... ...+..++++
T Consensus 99 v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~ 171 (406)
T PRK12381 99 VFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQD---FAPL----PPDIRHAAYN 171 (406)
T ss_pred EEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccC---CCCC----CCCeeEeCCC
Confidence 9999999999999999998874 6788999999999999888777775332211 1111 1235678899
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++++++.++ +++++|++||+++++|++.++++|+++|+++|++||+++|+||+|+|| ++|.+++.+++++.||++
T Consensus 172 d~~~l~~~l~---~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~ 248 (406)
T PRK12381 172 DLNSASALID---DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVL 248 (406)
T ss_pred CHHHHHHhcc---CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEE
Confidence 9999998886 479999999999999999999999999999999999999999999999 999877777889999999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
|+||++++|+|+|++++++++++.+.. ..+++|+++++++++++.++++.++.++++++++++.+++++.|+++..+
T Consensus 249 t~sK~l~gG~~ig~~~~~~~~~~~~~~---~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~ 325 (406)
T PRK12381 249 TTAKALGGGFPIGAMLTTEKCASVMTV---GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINAR 325 (406)
T ss_pred EehhhhhCCCceEEEEEcHHHHhhcCC---CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988863 34667899999999999999999877889999999999999999998777
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 405 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~ 405 (411)
++.+..+++.|+++++++.+. ....+..+.+.|+++||++.+.+.+.+|+ ++++|++++++++++|+
T Consensus 326 ~~~~~~vrg~Gl~~~~~l~~~-----------~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~ 394 (406)
T PRK12381 326 YGLFSEIRGLGLLIGCVLNAE-----------YAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFA 394 (406)
T ss_pred CCCEEEEecCeEEEEEEecCc-----------hhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHH
Confidence 777778889999999988431 11234688899999999998776667776 57799999999999999
Q ss_pred HHHHh
Q 015230 406 KVLRQ 410 (411)
Q Consensus 406 ~~~~~ 410 (411)
+++++
T Consensus 395 ~~l~~ 399 (406)
T PRK12381 395 RACER 399 (406)
T ss_pred HHHHH
Confidence 98865
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=411.90 Aligned_cols=376 Identities=24% Similarity=0.315 Sum_probs=309.9
Q ss_pred eEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-CCCEE
Q 015230 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMV 95 (411)
Q Consensus 20 ~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v 95 (411)
+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.... .+.++...++++.|.+..+ +.+++
T Consensus 28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v 107 (429)
T PRK06173 28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKI 107 (429)
T ss_pred ceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEE
Confidence 4689999999999999999999999999999999999999999999985422 3567888999999999987 67899
Q ss_pred EEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCcee---e
Q 015230 96 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETL---T 164 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~---~ 164 (411)
+|++||+||++.||++++.+ +++.+||.+.++|||.+..++.+++... ....+ +........+..... .
T Consensus 108 ~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 187 (429)
T PRK06173 108 FFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEE 187 (429)
T ss_pred EEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchh
Confidence 99999999999999999987 4578899999999999887776655311 11111 001110000000000 0
Q ss_pred cCCCCHHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC
Q 015230 165 APFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242 (411)
Q Consensus 165 ~~~~d~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~ 242 (411)
+..++++.+++.++++++++++|++||+ ++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+++.+++++
T Consensus 188 ~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv 267 (429)
T PRK06173 188 WNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGV 267 (429)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCC
Confidence 0011467788888766678999999997 9999999999999999999999999999999999999 9999988899999
Q ss_pred CcchhhhhhhccCC-cccccccccHHHHHHhcCC--CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 243 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 243 ~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
.||++++||+++|| +|+|.+++++++.+.+... ....+++|+.++|++|+++.++++.+++++++++++++.+++++
T Consensus 268 ~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~ 347 (429)
T PRK06173 268 VPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQ 347 (429)
T ss_pred CCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999 5899999999998887532 22457789999999999999999999888899999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDI 397 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i 397 (411)
.|+++ ..++.+.++++.|+++.+++.+. ..+..+.+.|+++||++.+.+ +.+++ |+++|++++
T Consensus 348 ~L~~~-~~~~~v~~vRg~Gl~~~iel~~~-------------~~~~~i~~~l~e~Gi~v~~~g-~~l~~~Ppl~it~~ei 412 (429)
T PRK06173 348 ELAPA-AEFDSVAEVRVLGAIGVVEMKEP-------------VNMATLQPRFVEHGIWVRPFG-KLVYIMPPFIISPDEL 412 (429)
T ss_pred HHHHh-hcCCCeeeeeccceEEEEEeCCc-------------ccHHHHHHHHHHCCeEEEecC-CEEEEeCCccCCHHHH
Confidence 99976 44666778899999999999532 123678899999999998875 46654 799999999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++.+
T Consensus 413 ~~~~~~l~~~l~~ 425 (429)
T PRK06173 413 SQLTSGLLRVLKQ 425 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-55 Score=407.80 Aligned_cols=374 Identities=27% Similarity=0.421 Sum_probs=311.9
Q ss_pred CccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHH
Q 015230 4 GVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVL 81 (411)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l 81 (411)
-+++..+.+.. .|+++.+++|+++||.||++|+||.++++++++||+||++.+++.+++++... ..+..+...++
T Consensus 7 ~~~~~~~~~~~---~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~l 83 (395)
T PRK03715 7 PIDSLMYITNR---PDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKL 83 (395)
T ss_pred hhhhhhcccCC---CCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHH
Confidence 35555555443 47899999999999999999999999999999999999999999999987432 23457788899
Q ss_pred HHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhcc-----CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCC
Q 015230 82 AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVP 155 (411)
Q Consensus 82 ~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 155 (411)
++++.+.. +.++++|++||+||++.|+++++.+. ++.+||+++++|||.+..++.+++........ +...
T Consensus 84 a~~l~~~~-~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~--- 159 (395)
T PRK03715 84 AGLLTQHS-CFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVP--- 159 (395)
T ss_pred HHHHhhcc-CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCC---
Confidence 99998764 56899999999999999999998663 56789999999999999988887753222111 1111
Q ss_pred CCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 156 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 156 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
.+...+++|++++++.+. +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+
T Consensus 160 -----~~~~~~~~d~~~l~~~l~---~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~ 231 (395)
T PRK03715 160 -----GFPKAELNDIASVEKLIT---DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTL 231 (395)
T ss_pred -----CceeeCCchHHHHHHHcC---CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcch
Confidence 223346779999998886 468999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 314 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~ 314 (411)
++.+++++.||++++||++++|+|+|++++++++.. +. ...+++|++++|++++++.++++.+++++++++++++.
T Consensus 232 ~a~~~~gv~PDi~t~gK~lg~G~p~~av~~~~~i~~-~~---~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g 307 (395)
T PRK03715 232 FAYELSGIEPDIMTLGKGIGGGVPLAALLAKAEVAV-FE---AGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARG 307 (395)
T ss_pred hhHhhcCCCCceeeehhhhhCCcceEEEEEcccccc-cc---CCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999999888753 22 23467899999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc---CeEeccCCCcceee--e
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE---GVYFAPSQFEAGFT--S 389 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---Gi~v~~~~~~~~~~--~ 389 (411)
++++++|+++..+++ ..++++.|+++.+++.+. ....+.+.+.+. |+++.+...+.+|+ +
T Consensus 308 ~~l~~~L~~l~~~~~-i~~vrG~Glm~~i~l~~~--------------~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~ 372 (395)
T PRK03715 308 EYLKEKLLELSEERG-LEGERGEGLLRALLLGKD--------------IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPA 372 (395)
T ss_pred HHHHHHHHHHhhcCC-cCeEEcceeEEEEEecCc--------------hHHHHHHHHHhccCCCEEEeecCCCEEEEeCC
Confidence 999999999877776 456889999999998531 113455555555 99998666667766 7
Q ss_pred cCCCHHHHHHHHHHHHHHHHhC
Q 015230 390 LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.+|++++++++++|+++++++
T Consensus 373 l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 373 LNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred cccCHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999998764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-55 Score=410.84 Aligned_cols=376 Identities=20% Similarity=0.290 Sum_probs=307.8
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--C-CCCCHHHHHHHHHHHhhCC-CC
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~-~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++... + .+.++...+++++|.+..+ +.
T Consensus 21 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 100 (422)
T PRK05630 21 VRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGL 100 (422)
T ss_pred CCCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCc
Confidence 358999999999999999999999999999999999999999999999998532 2 3467788999999999887 57
Q ss_pred CEEEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceee
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLT 164 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~ 164 (411)
++++|++||+||++.|+++++.++ ++.+||++.++|||.+..++.+++... ....+ +........+......
T Consensus 101 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 180 (422)
T PRK05630 101 DHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRG 180 (422)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccC
Confidence 899999999999999999998874 467899999999999998887765321 11111 1111110000000001
Q ss_pred cCCCC----HHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 165 APFND----VSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 165 ~~~~d----~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
.+.++ .+.+++.+. +++++||+||+ ++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~ 257 (422)
T PRK05630 181 SSPQEISEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATL 257 (422)
T ss_pred CChHHHHHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHH
Confidence 11122 234444443 58999999996 9999999999999999999999999999999999999 999999999
Q ss_pred ccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC---CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 314 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~ 314 (411)
++++.||+++++|+++|| +|+|++++++++.+.+... ....+++|+.++|++++++.++++.+++++++++++++.
T Consensus 258 ~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g 337 (422)
T PRK05630 258 AAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIE 337 (422)
T ss_pred hcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 999999999999999999 5899999999999887532 133578899999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCC
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAH 392 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~ 392 (411)
+++++.|+++. +++.+.++++.|+++.+++... ..+..+.+.++++|+++.+.+ +.+++ |+++
T Consensus 338 ~~l~~~L~~l~-~~~~v~~vRg~Gl~~~ie~~~~-------------~~~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~i 402 (422)
T PRK05630 338 AELIAGLSPLA-HLPGVADVRVLGAIGVVEMEQP-------------VDMEEATQAAVDHGVWLRPFG-RLVYVMPPYIT 402 (422)
T ss_pred HHHHHHHHHhh-cCCCeeeeeccccEEEEEECCc-------------ccHHHHHHHHHHCCeEEEecC-CEEEEECCccC
Confidence 99999999764 4677889999999999999532 113578889999999998865 55554 7999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 015230 393 SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~ 410 (411)
|++++|+++++|+++++.
T Consensus 403 t~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 403 TSEQIAQICAALAAAVKA 420 (422)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999999864
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=410.30 Aligned_cols=369 Identities=24% Similarity=0.367 Sum_probs=309.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhhC--C-C
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAV--P-S 91 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~--~-~ 91 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.. ...+..+...+++++|.+.. + +
T Consensus 17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~ 96 (412)
T TIGR02407 17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRG 96 (412)
T ss_pred CCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccC
Confidence 5889999999999999999999999999999999999999999999998632 12244777889999999875 2 2
Q ss_pred C-CEEEE-eCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC--
Q 015230 92 I-EMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-- 167 (411)
Q Consensus 92 ~-~~v~~-~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 167 (411)
. +++.| ++||+||++.|+++++.++++.+||.+.++|||.+..++..++......... .+ ...+..+|+
T Consensus 97 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~----~~---~~~~~~~p~~~ 169 (412)
T TIGR02407 97 LDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAG----VP---LSNVSRMPYDG 169 (412)
T ss_pred CCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCC----CC---CCCeEECCCCC
Confidence 3 35666 5899999999999999999999999999999999999988877543222111 00 012233333
Q ss_pred ------CCHHHHHHHHHcCC---CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc
Q 015230 168 ------NDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 237 (411)
Q Consensus 168 ------~d~~~l~~~~~~~~---~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~ 237 (411)
++++.+++.++++. +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+++.
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~ 249 (412)
T TIGR02407 170 YLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSF 249 (412)
T ss_pred ccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHh
Confidence 35777888887542 468999999999999999999999999999999999999999999999 99999888
Q ss_pred cccCCCcchhhhhhhccC-CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-HhcCChHHHHHHHHH
Q 015230 238 EYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKEPGTYEYLNKITG 315 (411)
Q Consensus 238 ~~~~~~~d~~~~sK~~~~-G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-~~~~~~~~~~~~~~~ 315 (411)
+++++.||++++||++++ |+|+|++++++++ +.+. ...+++|+++++++++++.++++. ++++++.+++++..+
T Consensus 250 ~~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~---~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~ 325 (412)
T TIGR02407 250 EPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWK---PGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSE 325 (412)
T ss_pred cccCCCCCEEEechhccCCccceeEEEEchhh-hccC---CCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 899999999999999998 9999999998876 5543 345778999999999999999995 766889999999999
Q ss_pred HHHHHHHHHHHhcC-CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ec
Q 015230 316 ELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SL 390 (411)
Q Consensus 316 ~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~ 390 (411)
+++++|+++...++ ...++++.|+++++++.+ ......+.+.++++||++.+.+. +.+|+ ++
T Consensus 326 ~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~-------------~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l 392 (412)
T TIGR02407 326 IIQERLDRIVAEYPELIKQVRGRGLMQGIECGD-------------GDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPL 392 (412)
T ss_pred HHHHHHHHHHhhCCCceEeeecceeEEEEEecC-------------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCC
Confidence 99999999888777 567889999999999943 23457889999999999987543 44554 78
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
++|++++++++++|++++++
T Consensus 393 ~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 393 TIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=406.65 Aligned_cols=362 Identities=25% Similarity=0.387 Sum_probs=311.8
Q ss_pred EEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEEEEeC
Q 015230 22 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVN 99 (411)
Q Consensus 22 ~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~ 99 (411)
+.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++... .+.++...+++++|.+.. +.++++|++
T Consensus 1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~f~~ 79 (382)
T PLN00144 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASS-FADRVFFCN 79 (382)
T ss_pred CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcC-CCCeEEEeC
Confidence 36799999999999999999999999999999999999999999985433 244777889999999876 467999999
Q ss_pred ChHHHHHHHHHHHHhccC-------------CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 100 SGTEACMGVLRLARAFTG-------------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 100 ~g~~a~~~al~~~~~~~~-------------~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
||+||++.|+++++.+++ +.+||.+.++|||.+..++...+......++ .+.. ..+..++
T Consensus 80 sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~--~~~~-----~~~~~~~ 152 (382)
T PLN00144 80 SGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPF--EPLM-----PGVTFVE 152 (382)
T ss_pred CcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccC--CCCC-----CCeEEeC
Confidence 999999999999988754 4689999999999999988877653222111 1111 2356788
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
++|++.+++.++ .+++++|++||+++++|.+.++.+|+++|+++|++||+++|+||+|+|| ++|.+++.+.+++.||
T Consensus 153 ~~d~~~l~~~~~--~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD 230 (382)
T PLN00144 153 YGNLEAARKLIQ--KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD 230 (382)
T ss_pred CCCHHHHHHhcC--CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC
Confidence 899999998886 3589999999999999999999999999999999999999999999999 9998777778899999
Q ss_pred hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 246 ~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
++||||++++|+|+|++++++++++.+.. ..+.+|+.++|++++++.++++.++++++.++++++++++++.|+++.
T Consensus 231 i~t~sK~l~~G~pig~v~~~~~~~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~ 307 (382)
T PLN00144 231 IMTLAKPLAGGLPIGAVLVTEKVASAINP---GDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKL 307 (382)
T ss_pred EEEecccccCCcceEEEEEcHHHHhccCC---CCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988763 346779999999999999999999888999999999999999999988
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceee--ecCCCHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~--~~~~t~~~i~~~i~ 402 (411)
.+++....+++.|+++|+++... ...+.+.++++||++.+++ .+.+|+ ++++|+++++++++
T Consensus 308 ~~~~~~~~vrg~G~~~~l~l~~~---------------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~ 372 (382)
T PLN00144 308 GGNPHVKEVRGVGLLVGIQLDVP---------------AGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVE 372 (382)
T ss_pred hhCCCceeeecCceEEEEEecCc---------------cHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHH
Confidence 88887788889999999999210 1578899999999999875 356666 56689999999999
Q ss_pred HHHHHHHhC
Q 015230 403 AAEKVLRQI 411 (411)
Q Consensus 403 ~l~~~~~~~ 411 (411)
+|++++.++
T Consensus 373 ~l~~~l~~~ 381 (382)
T PLN00144 373 ILADCLPAL 381 (382)
T ss_pred HHHHHHHhc
Confidence 999998764
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=400.42 Aligned_cols=353 Identities=27% Similarity=0.385 Sum_probs=302.7
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+.+.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++... ..+..+...++++.+.+.. +.++
T Consensus 5 ~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~ 83 (364)
T PRK04013 5 RKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV-NYEY 83 (364)
T ss_pred CCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc-CCCE
Confidence 358889999999999999999999999999999999999999999999998532 2456788899999999887 5689
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
++|++||+||++.|+++++.++++++||+++.+|||.+..++...+......... + ....+..++++|++.++
T Consensus 84 v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~--p-----~~~~~~~~~~~d~~~l~ 156 (364)
T PRK04013 84 VYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFE--P-----LVPGFKHIPFNDVEAAK 156 (364)
T ss_pred EEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCC--C-----CCCCcEEecCCCHHHHH
Confidence 9999999999999999999999999999999999999988887776533221111 0 11235567888999999
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG 254 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~ 254 (411)
+.+. +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+++|+|+|.+++.+++++.||+++++|+++
T Consensus 157 ~~i~---~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~gK~lg 233 (364)
T PRK04013 157 EAIT---KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIG 233 (364)
T ss_pred HHhc---CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEeccccc
Confidence 8886 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+|+|+|.++.+.++ . ...+++|+++||++|+++.+.++.++++++.++.++. |+++. .+.+.++
T Consensus 234 gG~P~~a~~~~~~~----~---~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~--~~~v~~v 297 (364)
T PRK04013 234 NGVPVSLTLTNFDV----E---RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIK--GERVVTT 297 (364)
T ss_pred CCceeEEEEecccc----c---CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhc--cCcceee
Confidence 99999999887664 1 2347789999999999999999999998888887764 23332 2667899
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++.|+++.+++.++ +..+.+.++++|+++.+.+.+.+++ |+++|++++++++++|+++++++
T Consensus 298 RG~Gl~~gve~~~~---------------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 298 RGRGLMIGIVLKKP---------------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred eeCcEEEEEEeCCc---------------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999421 2578899999999998877666665 79999999999999999998763
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=411.21 Aligned_cols=385 Identities=27% Similarity=0.407 Sum_probs=312.5
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCCC-C-
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS-I- 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~-~- 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++... .+..+...++++.|.+..|+ .
T Consensus 36 ~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~ 115 (451)
T PRK06918 36 IPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFD 115 (451)
T ss_pred CCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCC
Confidence 368899999999999999999999999999999999999999999999985432 23578889999999999974 3
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCC-CCCCCCCCCCCCceeecCCC--
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETLTAPFN-- 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 168 (411)
++++|++||+||++.||+++|.++++.+||.+.++|||.+..++.+.+.. .....+ +...++...+.......+..
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLT 195 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCc
Confidence 69999999999999999999999999999999999999999988776642 122111 11111110000001111110
Q ss_pred --C-----HHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 169 --D-----VSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 169 --d-----~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
. .+.+++.+.. .++++++||+||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|.+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~ 275 (451)
T PRK06918 196 EEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIE 275 (451)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhH
Confidence 0 2334444421 34689999999999999999999999999999999999999999999999 999877888
Q ss_pred ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
.+++.||++++||++++|+|+||+++++++++.+.. ..+++|+++++++++++.++++.++++++.+++++.+++++
T Consensus 276 ~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~---~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 352 (451)
T PRK06918 276 HFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAP---GELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVM 352 (451)
T ss_pred hcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccCC---CCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 888899999999999999999999999999888763 34677999999999999999999988899999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCCCH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSS 394 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~t~ 394 (411)
++|+++..+++.+..+++.|+++.+++.++... ..++...+..+.+.+.++||++.+++. +.+|+ ++++|+
T Consensus 353 ~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~ 427 (451)
T PRK06918 353 NRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKT-----KEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITD 427 (451)
T ss_pred HHHHHHHhhCCCceeeccceeEEEEEEccCCCc-----CCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCH
Confidence 999998777787778889999999888532110 113344567888999999999998642 45665 567899
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
++|++++++|++++++
T Consensus 428 ~~id~~l~~l~~~l~~ 443 (451)
T PRK06918 428 EQLEEGLTIIEESLQA 443 (451)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=443.99 Aligned_cols=386 Identities=24% Similarity=0.296 Sum_probs=320.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
..|+++.+++|+++||.||++|+||.+++ ..+||+||+|.+|+.++++++ ....+..+...+++++|.+..+ +.+.
T Consensus 605 ~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~ 682 (1013)
T PRK06148 605 SDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTV 682 (1013)
T ss_pred CCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCE
Confidence 35899999999999999999999999985 789999999999999999985 3334678888999999999997 5789
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC-CCCCCCCCCCceeecCCC--C--
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFN--D-- 169 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--d-- 169 (411)
++|++||+||++.||++++.++++.+||++.++|||.+..++.+++........+. ..++........+..+++ +
T Consensus 683 v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 762 (1013)
T PRK06148 683 AFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAE 762 (1013)
T ss_pred EEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhh
Confidence 99999999999999999999999999999999999999988877653211100000 011111111122334443 2
Q ss_pred -----HHHHHHHHH---cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Cccccc
Q 015230 170 -----VSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY 239 (411)
Q Consensus 170 -----~~~l~~~~~---~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~ 239 (411)
.+++++.++ ..++++++||+||+++++|.+.++++|+++|+++|++||+++|+|||++|| |+|. ++++++
T Consensus 763 ~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~ 842 (1013)
T PRK06148 763 HGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFET 842 (1013)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhh
Confidence 244555554 334689999999999999999999999999999999999999999999999 9996 889999
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.|||+|++|+++||+|+|.+++++++++.+... ..+++||++||++|+++.++++.++++++.++++++++++++
T Consensus 843 ~gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g--~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~ 920 (1013)
T PRK06148 843 QGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNG--MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLA 920 (1013)
T ss_pred cCCCcceeeecccccCCcceEEEEEcHHHHhhccCC--CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888642 235689999999999999999999989999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--ccee--eecCCCHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSD 395 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~--~~~~~t~~ 395 (411)
.|+++..+++.+.++++.|+++.+++..+... +.+....+..+.+.|+++||++.+.+. +.++ +|+++|++
T Consensus 921 ~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~-----~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~ 995 (1013)
T PRK06148 921 GLRELQDRFDIIGDVRGMGLFLGIELVTDRKT-----KAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRA 995 (1013)
T ss_pred HHHHHHHhCCCceEEeeeceEEEEEecCCccc-----cCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHH
Confidence 99999999999999999999999999643211 113344567899999999999987653 4444 48999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++|+++++|+++++++
T Consensus 996 ~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 996 DADHLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998763
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=409.27 Aligned_cols=369 Identities=25% Similarity=0.373 Sum_probs=306.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhhCC---C
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP---S 91 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~---~ 91 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.. ...+.++...++++.+.+..+ +
T Consensus 21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~ 100 (425)
T PRK09264 21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG 100 (425)
T ss_pred CCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC
Confidence 5889999999999999999999999999999999999999999999998621 123456778899999998752 2
Q ss_pred CC-EEEE-eCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC--
Q 015230 92 IE-MVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-- 167 (411)
Q Consensus 92 ~~-~v~~-~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 167 (411)
.+ ++.| ++||+||++.||++++.++++.+||++.++|||.+..++..++......... .+ ...+..+|+
T Consensus 101 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~----~~---~~~~~~~p~~~ 173 (425)
T PRK09264 101 LDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAG----VP---LNNVTRMPYDG 173 (425)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCC----CC---CCCeEEeCCCC
Confidence 33 6766 4899999999999999999999999999999999999988877543221110 00 012233333
Q ss_pred ------CCHHHHHHHHHcCC---CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc
Q 015230 168 ------NDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 237 (411)
Q Consensus 168 ------~d~~~l~~~~~~~~---~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~ 237 (411)
+|++++++.++++. +++++|++||+++++|++.++++|+++|+++|++||+++|+||+|+|| |+|..+..
T Consensus 174 ~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~ 253 (425)
T PRK09264 174 YFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSF 253 (425)
T ss_pred ccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHH
Confidence 47888898887532 468999999999999999999999999999999999999999999999 99988888
Q ss_pred cccCCCcchhhhhhhccC-CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHH-HHHhcCChHHHHHHHHH
Q 015230 238 EYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL-KRLKEPGTYEYLNKITG 315 (411)
Q Consensus 238 ~~~~~~~d~~~~sK~~~~-G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l-~~~~~~~~~~~~~~~~~ 315 (411)
+++++.||++|+||++++ |+|+|++++++++ ..+. ...+++|+++++++++++.+++ +.++++++.++++++.+
T Consensus 254 ~~~~v~PDi~t~~K~l~~~G~pigav~~~~~i-~~~~---~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~ 329 (425)
T PRK09264 254 ERAGITPDIVTLSKSISGYGLPMALVLIKPEL-DVWK---PGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGE 329 (425)
T ss_pred hhcCCCCCEEEeccccCCCccceEEEEEchhh-hccC---CCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999999997 9999999998876 3443 3346779999999999999999 56666789999999999
Q ss_pred HHHHHHHHHHHhcCC-ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ec
Q 015230 316 ELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SL 390 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~ 390 (411)
+++++|+++..+++. ..++++.|+++++++.+ ......+.+.+.++||++.+.+. +.+++ ++
T Consensus 330 ~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~-------------~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l 396 (425)
T PRK09264 330 LVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGD-------------GELAGKIAAEAFENGLIIETSGPEDEVVKLLPPL 396 (425)
T ss_pred HHHHHHHHHHHhCCCceecceecccEEEEEecC-------------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCC
Confidence 999999998776764 36788899999999842 23456889999999999988653 34544 67
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
++|++++++++++|++++++
T Consensus 397 ~~t~~ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 397 TIDEEELEEGLDILEEAVAE 416 (425)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999998865
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=399.58 Aligned_cols=386 Identities=31% Similarity=0.527 Sum_probs=311.6
Q ss_pred CCCCccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHH
Q 015230 1 MPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN 79 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~ 79 (411)
||+|+++..|.+..+. ..|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++..+........
T Consensus 12 ~p~g~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~ 91 (431)
T PRK06209 12 IPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNFTRPSAIEL 91 (431)
T ss_pred CCCCCCCCccccccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCCCCCCHHHH
Confidence 7999999999875443 458999999999999999999999999999999999999999999999999766655666667
Q ss_pred HHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEE-eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCC
Q 015230 80 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 158 (411)
Q Consensus 80 ~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 158 (411)
++++.|.+..++.++++|++||+||++.|+++++.++++.+|+.+ ..+||+...... |.. +...+.+...
T Consensus 92 ~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~---g~~------~~~~~~~~~~ 162 (431)
T PRK06209 92 DAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFI---GTT------PMSAGIPASV 162 (431)
T ss_pred HHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCcccccccccc---ccC------CCCCCCChhH
Confidence 899999999876789999999999999999999999999999888 678876322211 110 0011111111
Q ss_pred CCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc
Q 015230 159 TYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 237 (411)
Q Consensus 159 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~ 237 (411)
......++++|++++++.++++++++++|++||++++ .++++|+++|+++|++||+++|+||+++|| +.+ .+..
T Consensus 163 ~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~ 237 (431)
T PRK06209 163 SALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQ 237 (431)
T ss_pred hccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhh
Confidence 1234567889999999999876678999999998865 677899999999999999999999999999 532 2334
Q ss_pred cccCCCcchhhhhhhccCCcccccccccHHHHHH--hcC---CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 238 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM--VAP---AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 238 ~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~--~~~---~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
.++++.||++++||++++|+|+|++++++++++. +.. .....+++|++++|++++++.++++.++++++++++++
T Consensus 238 ~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~ 317 (431)
T PRK06209 238 KLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHE 317 (431)
T ss_pred HHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4579999999999999999999999999998886 311 12334678999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCC
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH 392 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~ 392 (411)
+.+++++.|+++..+++....+++.|.+..+.+...... ..+.......+.+.+.++|+++. .++++..+
T Consensus 318 ~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gi~~p-----~l~is~~h 387 (431)
T PRK06209 318 QGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGN-----GQPSQAFRTLFLQETIRRGVLMP-----SLVVSYAH 387 (431)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcc-----cCCcHHHHHHHHHHHHHCCcccc-----cccccccC
Confidence 999999999998888888888888888777766432110 00222233578888999999873 36777899
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 015230 393 SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~ 410 (411)
|+++|++++++|++++++
T Consensus 388 t~~dId~~l~~l~~~l~~ 405 (431)
T PRK06209 388 GDADIERTIDAVHGALGV 405 (431)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998875
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=400.01 Aligned_cols=371 Identities=20% Similarity=0.215 Sum_probs=296.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHH--HHcCC-CCCCCCHHHHHHHHHHHh----hC
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET--MKKGT-SFGAPCLLENVLAEMVIS----AV 89 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~--l~~~~-~~~~~~~~~~~l~~~l~~----~~ 89 (411)
..|+.+.+++|+++||.||++|+||.+++++.++||+||++.+|+.++ ..... ...+......++++.+.+ ..
T Consensus 39 ~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~ 118 (464)
T TIGR00699 39 HFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVA 118 (464)
T ss_pred ccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhC
Confidence 459999999999999999999999999999999999999999999984 33322 123455666778888754 56
Q ss_pred C-CCCEEEEeCChHHHHHHHHHHHHhccC---------------------------CcEEEEEeCCcCCCchhhhhhcCC
Q 015230 90 P-SIEMVRFVNSGTEACMGVLRLARAFTG---------------------------RERIIKFEGCYHGHADPFLVKAGS 141 (411)
Q Consensus 90 ~-~~~~v~~~~~g~~a~~~al~~~~~~~~---------------------------~~~vi~~~~~~~~~~~~~~~~~g~ 141 (411)
+ +.++++|++||+||++.|||+++.+.+ +.+||.+.++|||.+..++..++.
T Consensus 119 p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~ 198 (464)
T TIGR00699 119 PKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRS 198 (464)
T ss_pred CCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCC
Confidence 5 678999999999999999999986621 237999999999999999988775
Q ss_pred CCcccCCCCCCC---CCCCCC-Cce-------eecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHH
Q 015230 142 GVATLGLPDSPG---VPKGAT-YET-------LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 210 (411)
Q Consensus 142 ~~~~~~~~~~~~---~~~~~~-~~~-------~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~ 210 (411)
.......+.... ++.... .+. .....++++.++++++++.+++++||+||+++++|.+.++++|+++|+
T Consensus 199 ~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr 278 (464)
T TIGR00699 199 KPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLR 278 (464)
T ss_pred ccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence 422211111011 110000 000 001113567788888776678999999999999999999999999999
Q ss_pred HHHHHhCCEEEEecccccc-ccccCccccccCCC--cchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCC
Q 015230 211 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 286 (411)
Q Consensus 211 ~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~--~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~ 286 (411)
++|++||+++|+||+++|| ++|.+++.+++++. ||++++||+++ +|+.+ .. +. +.......+++|+.+
T Consensus 279 ~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~~~----~~-~~---~~~~~~~~~~~T~~g 350 (464)
T TIGR00699 279 DITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFF----HD-PA---FRPNKPYRQFNTWMG 350 (464)
T ss_pred HHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCccc----cc-hh---ccCCCCcccccCCCC
Confidence 9999999999999999999 99999999999997 99999999996 56532 22 22 222224567889999
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC-CceEEe--eecceEEEEEecCCCCCcchhcccchHH
Q 015230 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 287 ~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
+|++++++.++++.++++++.++++++++++++.|+++..+++ .+.+++ +.|+++.+++. +...
T Consensus 351 np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~-------------~~~~ 417 (464)
T TIGR00699 351 DPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTP-------------DEAK 417 (464)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecC-------------CHHH
Confidence 9999999999999998899999999999999999999988888 677888 99999999883 1223
Q ss_pred HHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHH
Q 015230 364 FARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 364 ~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~ 408 (411)
+..+.+.++++|+++.+.+.+.+|+ |+++|++++++++++|.+++
T Consensus 418 ~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 418 RDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred HHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 5788999999999998876566665 79999999999999998864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-53 Score=399.03 Aligned_cols=366 Identities=27% Similarity=0.398 Sum_probs=311.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+.+.+++|+++||.||++|+||.++++++++||+||++.+++.++++++... .+..+...+++++|.+.. +.++
T Consensus 12 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~ 90 (389)
T PRK01278 12 RADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENS-FADK 90 (389)
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhC-CCCE
Confidence 4588999999999999999999999999999999999999999999999974322 245777889999999887 5679
Q ss_pred EEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
++|++||++|++.|+++++.+ +++.+||+++++|||.+..+...++.......+. + ....+..++++
T Consensus 91 v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~ 163 (389)
T PRK01278 91 VFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFG-----P--LVPGFDQVPFG 163 (389)
T ss_pred EEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCC-----C--CCCCceEeCCC
Confidence 999999999999999998776 4567999999999999988887776533221110 0 01234457788
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++++++.++ +++++|++||+++++|...++++++++|+++|++||+++|+||+|+|| ++|..+..+++++.||++
T Consensus 164 d~~~l~~~l~---~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~ 240 (389)
T PRK01278 164 DIEALKAAIT---PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIM 240 (389)
T ss_pred CHHHHHHhhC---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEE
Confidence 9999999886 379999999999999988999999999999999999999999999999 888777777788999999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
|+||++++|+|+||+++++++++.+.. ..+++|++.++++++++.++++.++++++.++++++.++++++|+++...
T Consensus 241 t~sK~l~~G~~ig~~~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~ 317 (389)
T PRK01278 241 AVAKGIGGGFPLGACLATEEAAKGMTP---GTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDR 317 (389)
T ss_pred EEehhccCCcceEEEEEcHHHHhccCC---CCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998887763 34667899999999999999998877778899999999999999998766
Q ss_pred cC-CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHH
Q 015230 328 AG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAA 404 (411)
Q Consensus 328 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l 404 (411)
++ ....+++.|.++++++.. +..++++.|+++||++.|++.+.+|+ +++++++++++++++|
T Consensus 318 ~~~~~~~v~g~G~~~~i~~~~---------------~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l 382 (389)
T PRK01278 318 FPDVIEEVRGKGLLLGLKCVV---------------PNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERL 382 (389)
T ss_pred CCCceeeEecccEEEEEEEec---------------CHHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHH
Confidence 66 667788889999988732 12678999999999999987777887 4678999999999999
Q ss_pred HHHHHhC
Q 015230 405 EKVLRQI 411 (411)
Q Consensus 405 ~~~~~~~ 411 (411)
+++++++
T Consensus 383 ~~~l~~~ 389 (389)
T PRK01278 383 ERAAESL 389 (389)
T ss_pred HHHHHhC
Confidence 9998764
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=397.58 Aligned_cols=375 Identities=21% Similarity=0.292 Sum_probs=301.7
Q ss_pred eEEEeecCcEEEec-CCCEEEeccCCccccccCCCcHHHHH--HHHHHHHcCC-----CCCCCCHHHHHHHHHHHhhC-C
Q 015230 20 IVFDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVLA--ALGETMKKGT-----SFGAPCLLENVLAEMVISAV-P 90 (411)
Q Consensus 20 ~~~~~~~g~~~~~~-~g~~~~d~~~~~~~~~~g~~~~~v~~--a~~~~l~~~~-----~~~~~~~~~~~l~~~l~~~~-~ 90 (411)
+.+.+++|+++||. ||++|+||.+++++.++||+||++.+ ++.+++++.. ...+..+...++++.|.+.. +
T Consensus 28 ~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p 107 (443)
T PRK08297 28 LDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGD 107 (443)
T ss_pred eEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCC
Confidence 34799999999995 99999999999999999999999999 9999998632 12456778889999999887 4
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhcc------------CCcEEEEEeCCcCCCchhhhhhcCCCCcc-cCCCCC--CCC
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAFT------------GRERIIKFEGCYHGHADPFLVKAGSGVAT-LGLPDS--PGV 154 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~~------------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~--~~~ 154 (411)
+.++++|++||+||++.|+|+++.++ ++.+||.+.++|||.+..++..++..... ...+.. ..+
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 187 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCcccc
Confidence 57899999999999999999998762 24789999999999999999887643221 111110 001
Q ss_pred CCCC-C----C----ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecc
Q 015230 155 PKGA-T----Y----ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 155 ~~~~-~----~----~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
+... . . ....++.++++++++.+.++++++++||+||+++++|.+.++++|+++|+++|++||+++|+|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV 267 (443)
T PRK08297 188 DNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEV 267 (443)
T ss_pred CCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 0000 0 0 01112223567778888877789999999999999999999999999999999999999999999
Q ss_pred cccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC--CCCcccccCCCCCHHHHHHHHHHHHHHh
Q 015230 226 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLK 302 (411)
Q Consensus 226 ~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~~~ 302 (411)
++|| |+|.+++.+++++.||+++++|++. +|.++..+++.+.... .....+++|++++|++++++.++++.++
T Consensus 268 ~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~ 343 (443)
T PRK08297 268 QTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIE 343 (443)
T ss_pred hhccCccchHHHHHhcCCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999984 4444444443221110 0123477899999999999999999998
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC
Q 015230 303 EPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 381 (411)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~ 381 (411)
++++.++++++++++++.|+++..+++... ++++.|+++.+++.+ ......+.+.|.++||++.+.
T Consensus 344 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~-------------~~~~~~~~~~l~~~Gvl~~~~ 410 (443)
T PRK08297 344 EDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT-------------TADRDEVIRRLWEEGVLVLPC 410 (443)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC-------------HHHHHHHHHHHHHCCEEEecC
Confidence 899999999999999999999988888655 889999999999842 223467889999999999987
Q ss_pred CCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 382 QFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 382 ~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.+.+++ ++++|++++++++++|++++.++
T Consensus 411 ~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 411 GERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 6566665 89999999999999999998764
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=394.78 Aligned_cols=370 Identities=28% Similarity=0.396 Sum_probs=312.9
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++... .+..+...++++.|.+.. +.++
T Consensus 21 ~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~ 99 (403)
T PRK05093 21 PAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT-FAER 99 (403)
T ss_pred CCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC-CCCE
Confidence 4588999999999999999999999999999999999999999999999874322 235666789999999887 5679
Q ss_pred EEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
++|++||++|++.|+++++.++ ++.++|.++.+|||.+..+..+.+..... .++.. ....+..++++
T Consensus 100 ~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~ 172 (403)
T PRK05093 100 VFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYS------DGFGP-KPADITHVPFN 172 (403)
T ss_pred EEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhh------hcCCC-CCCCcEEeCCC
Confidence 9999999999999999998773 67889999999999998777666542111 11111 12356788999
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++.+++.+. +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|+ ++|.++..+.+++.||+.
T Consensus 173 d~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~ 249 (403)
T PRK05093 173 DLAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDIL 249 (403)
T ss_pred CHHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEE
Confidence 9999998886 468999999999999999899999999999999999999999999999 888766666778899999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
+|||++++|+|+||+++++++++.+.. ..+..++++++++++++.++++.+..++++++++++.+++.+.|+++..+
T Consensus 250 s~sK~l~~G~rig~vv~~~~i~~~l~~---~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 326 (403)
T PRK05093 250 TSAKALGGGFPIGAMLTTAEIASHFKV---GTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQK 326 (403)
T ss_pred EecccccCCcceEEEEEcHHHHhhcCC---CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888763 23556889999999999999998877888999999999999999998766
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 405 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~ 405 (411)
++....+++.|.++++++... ......++++.|.++||++.+.+.+.+|+ ++.++++++++++++|.
T Consensus 327 ~~~~~~~~~~G~~~~~~l~~~-----------~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~ 395 (403)
T PRK05093 327 YGVFSEIRGMGLLIGAELKPQ-----------YKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFE 395 (403)
T ss_pred CCCeEeEeeCceEEEEEecCc-----------chhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 666667788899999988421 01234688999999999999877677887 68889999999999999
Q ss_pred HHHHhC
Q 015230 406 KVLRQI 411 (411)
Q Consensus 406 ~~~~~~ 411 (411)
+++.++
T Consensus 396 ~~l~~~ 401 (403)
T PRK05093 396 KAVAKV 401 (403)
T ss_pred HHHHHh
Confidence 988753
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=396.74 Aligned_cols=373 Identities=27% Similarity=0.411 Sum_probs=316.0
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+++.+++|.++||.||++|+||.+++++.++||+||++.+++.++++++... .+..+...++++.+++.+ +.+++
T Consensus 57 ~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~-~~~~~ 135 (474)
T PLN02624 57 IPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF-GYDMV 135 (474)
T ss_pred CCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc-CCCeE
Confidence 488999999999999999999999999999999999999999999999985432 255777889999999988 46899
Q ss_pred EEeCChHHHHHHHHHHHHhcc--------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 96 RFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~--------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+|++||+||++.||++++.++ ++..|+.+.++|||.+..++.+++.......+ .+. ...+..+++
T Consensus 136 ~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~--~~~-----~~~~~~~~~ 208 (474)
T PLN02624 136 LPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGF--GPL-----LPGHLKVDF 208 (474)
T ss_pred EEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccC--CCC-----CCCceEeCC
Confidence 999999999999999998752 23479999999999999998877653222111 011 123556788
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~ 246 (411)
+|++.+++.++..++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|..+..++.++.||+
T Consensus 209 ~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDi 288 (474)
T PLN02624 209 GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDV 288 (474)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCE
Confidence 99999999998766789999999999999999999999999999999999999999999999 99988877788999999
Q ss_pred hhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+++||++++| +|+|+++.++++++.+.+ ..+++|+++++++++++.++++.++++++.++..++.+++++.|+++.
T Consensus 289 v~lsK~lggG~~pigav~~~~~i~~~~~~---~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~ 365 (474)
T PLN02624 289 VILGKALGGGVIPVSAVLADKDVMLCIKP---GEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQ 365 (474)
T ss_pred EEecccccCCCCcceeeeecHHHHhHhcc---CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976 899999999888887753 346778999999999999999998878899999999999999999987
Q ss_pred HhcC-CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHH
Q 015230 326 KKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 326 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~ 402 (411)
.+++ .+..+++.|.++.+++.... .....+..+++.|.++||++.+.+.+.+|+ ++.+|+++|+++++
T Consensus 366 ~~~~~~i~~vrg~G~~~~i~l~~~~---------~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~ 436 (474)
T PLN02624 366 KQFPKLIKEVRGRGLLNAVVLNSPK---------LGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSK 436 (474)
T ss_pred HhCCCceEEEEeeEEEEEEEecCCC---------cChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHH
Confidence 7777 45668889999998884321 012345678899999999999987677777 57999999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|++++..
T Consensus 437 ~L~~~l~~ 444 (474)
T PLN02624 437 ALSDVLEH 444 (474)
T ss_pred HHHHHHHH
Confidence 99988764
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-52 Score=427.67 Aligned_cols=384 Identities=24% Similarity=0.314 Sum_probs=314.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~v 95 (411)
.|+++.+++|+++||.+|++|+||.+++ ..+||+||+|.+|+.+++.++...+ +..+...+++++|.+.++ +.+++
T Consensus 567 ~p~~i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~~~v 644 (972)
T PRK06149 567 DPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTV 644 (972)
T ss_pred CCCeEEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCcCEE
Confidence 4778999999999999999999999886 5799999999999999999854332 456778999999999997 58899
Q ss_pred EEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC-C-CCCCCCCCCCCCceeecCC--CC--
Q 015230 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-L-PDSPGVPKGATYETLTAPF--ND-- 169 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~~~~~~~~~~~~~~--~d-- 169 (411)
+|++||+||++.||++++.++++.+||+++.+|||++.++..+++....... . +...++......+.+..++ ++
T Consensus 645 ~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~ 724 (972)
T PRK06149 645 FLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSA 724 (972)
T ss_pred EEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccH
Confidence 9999999999999999999999999999999999999887665443110000 0 0001111111112222222 22
Q ss_pred ---HHHHHHHHH---cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-CccccccC
Q 015230 170 ---VSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFG 241 (411)
Q Consensus 170 ---~~~l~~~~~---~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~~ 241 (411)
.+++++.++ +.++++++||+||+++++|.+.++++|+++|+++|++||+++|+||||+|| |+|. +++++++|
T Consensus 725 ~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~g 804 (972)
T PRK06149 725 ADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQG 804 (972)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcC
Confidence 344444443 245689999999999999999999999999999999999999999999999 9996 56888899
Q ss_pred CCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015230 242 VTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321 (411)
Q Consensus 242 ~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 321 (411)
+.|||+|+||++++|+|+|++++++++++.+... ..+++|+++||++|+++.++++.++++++.++.++++++++++|
T Consensus 805 v~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~--~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L 882 (972)
T PRK06149 805 VVPDIITMAKGMGNGHPLGAVITRREIAEALEAE--GYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARL 882 (972)
T ss_pred CCCCEEEecccccCCeeeEEEEEcHHHHhhhccC--CcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888642 23456889999999999999999998999999999999999999
Q ss_pred HHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--ccee--eecCCCHHHH
Q 015230 322 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSDDI 397 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~--~~~~~t~~~i 397 (411)
+++..+++++.++++.|+++.+++...... +.+....+..+.+.|+++||++.+.+. +.++ +|+++|++++
T Consensus 883 ~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~-----~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~i 957 (972)
T PRK06149 883 EALADRHPLIGAVHGMGLYLGVELVRDRQT-----LEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESA 957 (972)
T ss_pred HHHHHhCCCeEEEeecceEEEEEEecCccc-----CCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHH
Confidence 999888999999999999999999643111 113334567899999999999998764 4455 4789999999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 958 d~~~~~l~~~l~~ 970 (972)
T PRK06149 958 DFFVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-52 Score=391.67 Aligned_cols=362 Identities=25% Similarity=0.353 Sum_probs=304.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++++... ....+...++++++++..+ .++
T Consensus 21 ~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~ 99 (396)
T PRK04073 21 PLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTG-KDM 99 (396)
T ss_pred CCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCC-CCe
Confidence 3488999999999999999999999999999999999999999999999985322 2456777899999998774 579
Q ss_pred EEEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 95 VRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
++|++||++|++.||++++.+ +++++||+++.+|||.+..++.+++........ ... ...+..++
T Consensus 100 ~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~ 172 (396)
T PRK04073 100 VLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGF--GPM-----LPGIKKIP 172 (396)
T ss_pred EEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCC--CCC-----CCCceEeC
Confidence 999999999999999999876 467889999999999998888777653222111 011 12345678
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
++|++++++.++ +++++|++||+++++|.+.++++|+++|.++|++||+++|+||+|+|| ++|..++.+..++.||
T Consensus 173 ~~d~~~l~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pd 249 (396)
T PRK04073 173 YGDLEALKAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPD 249 (396)
T ss_pred CCCHHHHHHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCC
Confidence 889999998885 468999999999999999999999999999999999999999999999 8887777677888999
Q ss_pred hhhhhhhccC-CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 246 ~~~~sK~~~~-G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
++++||++++ |+|+|++++++++++.+.. ..+.+|+++++++++++.++|+.++++++.++.+++++++.+.|+++
T Consensus 250 i~~~sK~lg~gg~~ig~~~~~~~i~~~~~~---~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l 326 (396)
T PRK04073 250 MYILGKALGGGVFPISCVAANRDILGVFTP---GSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI 326 (396)
T ss_pred EEEecccccCCCCcceEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999996 5999999999999988863 23567899999999999999998877889999999999999999886
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~ 402 (411)
. .+....+++.|+++++++.. .+..+.+.|.++||++.+.+.+.+|+ ++++|+++++++++
T Consensus 327 ~--~~~i~~~~~~g~~~~~~~~~---------------~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~ 389 (396)
T PRK04073 327 D--NPMIKEVRGRGLFIGVELNE---------------PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFE 389 (396)
T ss_pred c--CCcccceecceEEEEEEecc---------------hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHH
Confidence 2 24455667889998988732 13678899999999998866567777 47999999999999
Q ss_pred HHHHHHH
Q 015230 403 AAEKVLR 409 (411)
Q Consensus 403 ~l~~~~~ 409 (411)
+|+++++
T Consensus 390 ~l~~~l~ 396 (396)
T PRK04073 390 KIKAVLS 396 (396)
T ss_pred HHHHHhC
Confidence 9998763
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=386.68 Aligned_cols=377 Identities=22% Similarity=0.294 Sum_probs=308.9
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
++.+.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.... ..+.+...++++++.+..+ +.++
T Consensus 28 ~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 107 (427)
T TIGR00508 28 VYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDC 107 (427)
T ss_pred CceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCE
Confidence 45689999999999999999999999999999999999999999999985321 2456778999999999987 5689
Q ss_pred EEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCC-cccC-CCCCCCCCCCCCC-ceeec
Q 015230 95 VRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGV-ATLG-LPDSPGVPKGATY-ETLTA 165 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~-~~~~~ 165 (411)
++|++||+||++.|+++++.++ ++.+||++.++|||.+..+..+++... .... .+........... .....
T Consensus 108 v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 187 (427)
T TIGR00508 108 VFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDE 187 (427)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccc
Confidence 9999999999999999998763 467899999999999988887766421 1100 0101111000000 00111
Q ss_pred --CCCCHHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC
Q 015230 166 --PFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 241 (411)
Q Consensus 166 --~~~d~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~ 241 (411)
.++|++++++.+++.++++++|++||+ ++++|...++.+|+++|+++|++||+++|+||+|+|| ++|.++..++++
T Consensus 188 ~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~ 267 (427)
T TIGR00508 188 EWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAG 267 (427)
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcC
Confidence 223678888888876678999999997 8889999999999999999999999999999999999 999888888899
Q ss_pred CCcchhhhhhhccCC-cccccccccHHHHHHhcCC--CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 242 VTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 242 ~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
+.||++++||+++|| +|++.+++++++.+.+... ....+++|+.++|++++++.++++.+++++++++++++.++++
T Consensus 268 v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 347 (427)
T TIGR00508 268 VVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLK 347 (427)
T ss_pred CCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999 4899999999998888642 1234677999999999999999999988889999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 396 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~ 396 (411)
+.|+++.. ++....+++.|+++.+++.+. .....+.+.|.++||++.+.+ +.+++ ++.+|++|
T Consensus 348 ~~L~~l~~-~~~i~~vrg~G~~~~i~~~~~-------------~~~~~~~~~l~~~Gv~~~~~~-~~l~~~ppl~~t~~~ 412 (427)
T TIGR00508 348 RELSPLRK-NPVVKDVRVLGAIGVVEMYKP-------------VNVEELQKKFVEQGVWIRPFG-KLIYVMPPYIITTEQ 412 (427)
T ss_pred HHHHHhhc-CCCEEeEeccccEEEEEECCc-------------cCHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHH
Confidence 99999853 555667889999999999432 113578899999999998765 34555 68899999
Q ss_pred HHHHHHHHHHHHHh
Q 015230 397 IQHTITAAEKVLRQ 410 (411)
Q Consensus 397 i~~~i~~l~~~~~~ 410 (411)
||+++++|++++++
T Consensus 413 id~~~~~l~~~l~~ 426 (427)
T TIGR00508 413 LQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=381.32 Aligned_cols=363 Identities=29% Similarity=0.407 Sum_probs=307.7
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+.+.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++... ..+..+.+.++++++.+..+ .+.
T Consensus 10 ~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~ 88 (377)
T PRK02936 10 RFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA-GDL 88 (377)
T ss_pred CCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC-CCE
Confidence 357889999999999999999999999999899999999999999999987422 22457888999999988764 568
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
++|++||++|++.|+++++.++++++|++++++|||.+...+..++....... +.. ....+..++++|+++++
T Consensus 89 ~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~d~~~l~ 161 (377)
T PRK02936 89 VFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEG------FGP-LLPGFTHVPFNDIKALK 161 (377)
T ss_pred EEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCcccccc------CCC-CCCCceEeCCCCHHHHH
Confidence 99999999999999999888888899999999999999888776654222111 100 11235567888999999
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhc
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKII 253 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~ 253 (411)
+.+. +++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|| ++|..+..+++++.||++++||++
T Consensus 162 ~~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l 238 (377)
T PRK02936 162 EVMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGL 238 (377)
T ss_pred Hhcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccc
Confidence 8886 468999999999999999889999999999999999999999999999 888766666778899999999999
Q ss_pred cCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 254 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 254 ~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
++|+|+||+++++++.+.+.. ..+.+++++++++++++.++++.+..++++++++++.+++++.|+++..+++....
T Consensus 239 ~~G~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 315 (377)
T PRK02936 239 GNGIPVGAMIGKKELGTAFGP---GSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKN 315 (377)
T ss_pred cCCCccEEEEEcHHHHhhccC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEe
Confidence 999999999999999888863 23556889999999999999998866788999999999999999987656676666
Q ss_pred EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 334 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
+++.|+++++++.+. ...+.+.|.++||++.+.+.+.+|+. +.++++++++++++|++++
T Consensus 316 v~~~g~~~~i~~~~~---------------~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 316 IRGKGLMIGIECTEE---------------VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred EeecceEEEEEecch---------------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 778899999988421 36788999999999999877778874 7899999999999998764
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=383.82 Aligned_cols=364 Identities=28% Similarity=0.409 Sum_probs=308.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCC--CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPS--IE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~--~~ 93 (411)
.|+++.+++|+++||.||++|+||.++++++++||+||++.+++.+++++... ..+......++++++++.++. .+
T Consensus 25 ~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 104 (398)
T PRK03244 25 PPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGG 104 (398)
T ss_pred CCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCC
Confidence 57899999999999999999999999999999999999999999999998422 235667778999999998862 47
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
++++++||++|++.++++++. .++.++|.++++|||.+..+....+........ .. ...++..++++|++++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~d~~~l 176 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPF---EP----LPGGVEHVPYGDVDAL 176 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCC---CC----CCCCceEeCCCCHHHH
Confidence 999999999999999998866 567789999999999998887776643221111 00 1234566788899999
Q ss_pred HHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhh
Q 015230 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 252 (411)
Q Consensus 174 ~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~ 252 (411)
++.++ +++++|++||+++++|.+.++++|+++|.++|++||+++|+||+|+|| ++|.++++++.++.||+++|||+
T Consensus 177 ~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~ 253 (398)
T PRK03244 177 AAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKG 253 (398)
T ss_pred HHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchh
Confidence 98885 478999999999999999999999999999999999999999999999 88877677778899999999999
Q ss_pred ccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 253 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 253 ~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+++|+|+|++++++++++.+.. ..+.++++.++++++++.++++.++++++.++++++.+++++.|+++. ++...
T Consensus 254 l~~G~~ig~~~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~ 328 (398)
T PRK03244 254 LGGGLPIGACLAFGPAADLLTP---GLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALG--HPLVD 328 (398)
T ss_pred hhCCcccEEEEEcHHHHhhccC---CCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC--CCcee
Confidence 9999999999999998887763 346678999999999999999988878899999999999999998862 45556
Q ss_pred EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 333 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+++.|+++++++... .+..+.+.|.++||++.+...+.+|+ ++.+|++|+++++++|++++.+
T Consensus 329 ~v~g~g~~~~i~~~~~--------------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 329 HVRGRGLLLGIVLTAP--------------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred eEeeccEEEEEEEecc--------------HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 7788899999998421 23678999999999999876677776 4778999999999999999876
Q ss_pred C
Q 015230 411 I 411 (411)
Q Consensus 411 ~ 411 (411)
+
T Consensus 395 ~ 395 (398)
T PRK03244 395 A 395 (398)
T ss_pred c
Confidence 3
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=386.95 Aligned_cols=374 Identities=21% Similarity=0.285 Sum_probs=295.9
Q ss_pred CCCCeE--EEeecCcEEEec-CCCEEEeccCCccccccCCCcHHHH--HHHHHHHHcCC----C-CCCCCHHHHHHHHHH
Q 015230 16 GGQPIV--FDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVL--AALGETMKKGT----S-FGAPCLLENVLAEMV 85 (411)
Q Consensus 16 ~~~~~~--~~~~~g~~~~~~-~g~~~~d~~~~~~~~~~g~~~~~v~--~a~~~~l~~~~----~-~~~~~~~~~~l~~~l 85 (411)
...|+. +.+++|+++||. ||++|+||.+++++.++||+||++. +++.+++++.. . ..+......+++++|
T Consensus 15 ~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (431)
T TIGR03251 15 DGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTF 94 (431)
T ss_pred cCCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHH
Confidence 345665 499999999996 9999999999999999999999999 99999998742 1 134567778888888
Q ss_pred HhhC-C-CCCEEEEeCChHHHHHHHHHHHHhccC------------CcEEEEEeCCcCCCchhhhhhcCCCCcc-cCCCC
Q 015230 86 ISAV-P-SIEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGSGVAT-LGLPD 150 (411)
Q Consensus 86 ~~~~-~-~~~~v~~~~~g~~a~~~al~~~~~~~~------------~~~vi~~~~~~~~~~~~~~~~~g~~~~~-~~~~~ 150 (411)
.+.. + +.++++|++||+||++.||++++.+++ +.+||.+.++|||.+..++..++..... ...+.
T Consensus 95 ~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~ 174 (431)
T TIGR03251 95 ARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPK 174 (431)
T ss_pred HHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCC
Confidence 8875 3 678999999999999999999988752 4689999999999999998887753222 11111
Q ss_pred CCC--C--CCCC-C--C----ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCE
Q 015230 151 SPG--V--PKGA-T--Y----ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGAL 219 (411)
Q Consensus 151 ~~~--~--~~~~-~--~----~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~ 219 (411)
... + +... + . .....+.++++++++.+.++++++++|++||+++++|.+.++++|+++|+++|++||++
T Consensus 175 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~l 254 (431)
T TIGR03251 175 FDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDAL 254 (431)
T ss_pred CCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 100 0 0000 0 0 01111223566777788777789999999999999999999999999999999999999
Q ss_pred EEEecccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhc--CCCCcccccCCCCCHHHHHHHHH
Q 015230 220 LIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIH 296 (411)
Q Consensus 220 li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~a~~~~ 296 (411)
+|+||+|+|| ++|.+++.+++++.||+++++|++. ++.++..+++.+... ......+++|++++|++++++.+
T Consensus 255 lI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~~----~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a 330 (431)
T TIGR03251 255 LIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKTQ----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATR 330 (431)
T ss_pred EEEecchhccCccchHHHHHhcCCCCCEEEecccCc----cceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHH
Confidence 9999999999 9999999999999999999999973 434434333222111 01122467799999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 297 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
+++.++++++.++++++.+++++.|+++..+++ .+.++++.|+++.+++.+ ......+.+.|+++|
T Consensus 331 ~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~-------------~~~~~~~~~~l~~~G 397 (431)
T TIGR03251 331 ILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS-------------TADRDEVIRQLYREG 397 (431)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC-------------HHHHHHHHHHHHhCC
Confidence 999998888999999999999999999877777 778889999999999832 223467889999999
Q ss_pred eEeccCCCccee--eecCCCHHHHHHHHHHHHH
Q 015230 376 VYFAPSQFEAGF--TSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 376 i~v~~~~~~~~~--~~~~~t~~~i~~~i~~l~~ 406 (411)
|++.+.+.+.+| +++++|++|+++++++|++
T Consensus 398 vl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 398 VLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred eEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 999887656666 4799999999999999976
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=380.40 Aligned_cols=381 Identities=28% Similarity=0.438 Sum_probs=312.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-C-C
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S-I 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~-~ 92 (411)
.|+++.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.... ........++++++.+..+ + .
T Consensus 23 ~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 102 (425)
T PRK08088 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFA 102 (425)
T ss_pred CCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 488999999999999999999999999999999999999999999999985322 1235667899999999876 3 3
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCCC-CCCCCCCCCCCceeecCCC--
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLP-DSPGVPKGATYETLTAPFN-- 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~-- 168 (411)
++++|++||++|++.||++++.++++.+||++.++|||.+..+...++... ...... ...++.. ..+..+.+
T Consensus 103 ~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~ 178 (425)
T PRK08088 103 KKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYR----ALYPCPLHGV 178 (425)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEE----cCCCccccCc
Confidence 699999999999999999999999999999999999999988887765311 111110 0011100 00001111
Q ss_pred ----CHHHHHHHHH--cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC
Q 015230 169 ----DVSALENLFE--NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 241 (411)
Q Consensus 169 ----d~~~l~~~~~--~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~ 241 (411)
+++++++.++ ..++++++|++||+++++|.+.++++++++|.++|++||+++|+||+|+|+ ++|.++..+..+
T Consensus 179 ~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~ 258 (425)
T PRK08088 179 SEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258 (425)
T ss_pred cHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcC
Confidence 1567888886 335789999999999999999999999999999999999999999999999 888777777788
Q ss_pred CCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015230 242 VTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321 (411)
Q Consensus 242 ~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 321 (411)
+.||+.||||++++|+|+||+++++++++.+.. ..+.+|+.+++++++++.+.++.++.+++.+++++..+++++.|
T Consensus 259 ~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 335 (425)
T PRK08088 259 VAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAP---GGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL 335 (425)
T ss_pred CCCCEEEEeccccCCCcceeeEecHHHHhhcCC---CCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998864 33567999999999999999999877899999999999999999
Q ss_pred HHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHHHH
Q 015230 322 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDI 397 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~~i 397 (411)
+++..+++....+++.|+++|+.+.+... ...++......+.+.+.++||++.+++ .+.+|+ ++.+|+++|
T Consensus 336 ~~l~~~~~~~~~v~g~G~~~~l~l~~~~~-----~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei 410 (425)
T PRK08088 336 LAIAEKHPEIGDVRGLGAMIAIELFEDGD-----HSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 410 (425)
T ss_pred HHHHHhCCCeEEEeccceEEEEEEecCCC-----CCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHH
Confidence 99988888777888889999999954321 111344567889999999999887754 245676 456899999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++..
T Consensus 411 ~~~i~~l~~~l~~ 423 (425)
T PRK08088 411 RQGLEIIAQCFDE 423 (425)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=379.88 Aligned_cols=316 Identities=36% Similarity=0.597 Sum_probs=273.7
Q ss_pred EEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCC-CCCEEE
Q 015230 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVR 96 (411)
Q Consensus 21 ~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~ 96 (411)
++.+++|+++||.||++|+||.+++++.++||+||++.+++.++++.... ..+..+...+++++|.+..| +.++++
T Consensus 1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~ 80 (339)
T PF00202_consen 1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF 80 (339)
T ss_dssp EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence 47899999999999999999999999999999999999999999998643 34568888999999999997 789999
Q ss_pred EeCChHHHHHHHHHHHH------hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 97 FVNSGTEACMGVLRLAR------AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 97 ~~~~g~~a~~~al~~~~------~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
|++||+||++.||++++ ..+++.+|+++.++|||.+..++.+++.+....... + ....+..+|++++
T Consensus 81 f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~--~-----~~~~~~~~p~~~~ 153 (339)
T PF00202_consen 81 FANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFG--P-----LYPGVVFVPFPDP 153 (339)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTC--S-----SSTTEEEEETTCH
T ss_pred eccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccccccc--c-----cccccccccCCcc
Confidence 99999999999999999 778999999999999999999988876644432211 1 1123466777776
Q ss_pred HH----------HHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 171 SA----------LENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 171 ~~----------l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
.. +++.+. ...+++++||+||+++++|.+.++++|+++|+++|++||+++|+||+++|| |+|.+++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~ 233 (339)
T PF00202_consen 154 AADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASE 233 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHH
T ss_pred chhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcccee
Confidence 55 333333 235689999999999999999999999999999999999999999999999 999999999
Q ss_pred ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
++++.||++|+||++++|+|+|.+++++++.+.+... .+++|+.++|++|+++.+.++.++++++.+++++.+++++
T Consensus 234 ~~gv~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~---~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~ 310 (339)
T PF00202_consen 234 HYGVDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPG---SHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLR 310 (339)
T ss_dssp HHTSSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTT---SSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccccCcccccccchhhhhhcccccccchhhcccccc---ccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888643 3788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
++|+++..+++.+..+++.|+++.+++.
T Consensus 311 ~~L~~l~~~~~~i~~vrg~Gl~~~ie~~ 338 (339)
T PF00202_consen 311 EGLRELAARYPLIGEVRGIGLMIGIELV 338 (339)
T ss_dssp HHHHHHHHHTTTEEEEEEETTEEEEEES
T ss_pred HHHHHHHHhCCCeEEEeeeCeEEEEEEE
Confidence 9999999888999999999999999984
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=380.46 Aligned_cols=379 Identities=36% Similarity=0.546 Sum_probs=316.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCC---CCHHHHHHHHHHHhhCC-CC
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~-~~ 92 (411)
..|+++.+++|+++||.||++|+||.++++..++||+||++++++.+++..+..+.. ..+...++++.+++.++ +.
T Consensus 17 ~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (413)
T cd00610 17 PYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGL 96 (413)
T ss_pred CCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCC
Confidence 468899999999999999999999999988899999999999999999987544432 47889999999999997 78
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC----
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---- 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 168 (411)
+++++++||++|++.++++++.++++++|++++++||+.........+..... +.......++..++++
T Consensus 97 ~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 169 (413)
T cd00610 97 DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYR-------GGFGPLLPGVLHVPYPYRYR 169 (413)
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCcccc-------ccCCCCCCCcEEeCCCcccc
Confidence 99999999999999999998888889999999999999998887776542111 1111122345667776
Q ss_pred -------CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc
Q 015230 169 -------DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240 (411)
Q Consensus 169 -------d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~ 240 (411)
|++.+++.++++++++++++++|+++++|.+.++++|+++|.++|++||+++|+||+|+|| +.|..+..+.+
T Consensus 170 ~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~ 249 (413)
T cd00610 170 PPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHF 249 (413)
T ss_pred chhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhc
Confidence 8899999998765689999999999999999999999999999999999999999999999 88876677778
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++++||++++|+|+||+++++++++.+. .....+.+|++.++++++++.++++.++.+++.++++++.+++++.
T Consensus 250 ~~~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~ 328 (413)
T cd00610 250 GVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFP-AGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRER 328 (413)
T ss_pred CCCCCeEEEcccccCccccEEEEEcHHHHHhhc-cCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988861 1234456789999999999999999887788999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQ 398 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~ 398 (411)
|+++...++....+++.|.++++.+.+..... .++......+.+.|.++||++.+++.+.+|+ ++.+|+++++
T Consensus 329 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~~t~~~i~ 403 (413)
T cd00610 329 LRELAEKHPLVGDVRGRGLMIGIELVKDRATK-----PPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEID 403 (413)
T ss_pred HHHHHhhCCcEEEeecCceEEEEEEecCCCcC-----CcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHH
Confidence 99886655666666778999999886432110 1223456789999999999999986556666 6788999999
Q ss_pred HHHHHHHHHH
Q 015230 399 HTITAAEKVL 408 (411)
Q Consensus 399 ~~i~~l~~~~ 408 (411)
+++++|++++
T Consensus 404 ~~~~~l~~~l 413 (413)
T cd00610 404 EGLDALDEAL 413 (413)
T ss_pred HHHHHHHHhC
Confidence 9999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=393.43 Aligned_cols=397 Identities=20% Similarity=0.253 Sum_probs=308.8
Q ss_pred ccCcccccccCCC-CCeEEEeecCc----EEEecCCC----EEEeccCCccccccCC-CcHHHHHHHHHHHHcCCCC---
Q 015230 5 VNSPVRAFKSVGG-QPIVFDSVKGS----HMWDIDGN----EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSF--- 71 (411)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~g~----~~~~~~g~----~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~~--- 71 (411)
+|++.-.+..... .+.++.++.|. +++|.+|+ +|+|++++||+..+|| +||++.+|+.+++.+..+.
T Consensus 325 iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~ 404 (817)
T PLN02974 325 LWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMFP 404 (817)
T ss_pred ccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccccC
Confidence 5665555544432 47888999998 99999998 9999999999999994 8999999999999996432
Q ss_pred CCCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHh-cc------------------CCcEEEEEeCCcCC
Q 015230 72 GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARA-FT------------------GRERIIKFEGCYHG 130 (411)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~-~~------------------~~~~vi~~~~~~~~ 130 (411)
.+.++...+++++|.+..+ + .++|+|++||++|+|.|||+++. +. ++.+||.+.++|||
T Consensus 405 ~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG 484 (817)
T PLN02974 405 ENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHG 484 (817)
T ss_pred ccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCC
Confidence 3468889999999999665 3 68999999999999999999953 41 36689999999999
Q ss_pred CchhhhhhcCCCCcccCC--CC----CCCCCCCC-----CCceeecCCC-------------------------------
Q 015230 131 HADPFLVKAGSGVATLGL--PD----SPGVPKGA-----TYETLTAPFN------------------------------- 168 (411)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~--~~----~~~~~~~~-----~~~~~~~~~~------------------------------- 168 (411)
.+.+++.+++.......+ +. ...++... +.....++.+
T Consensus 485 ~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~ 564 (817)
T PLN02974 485 DTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKA 564 (817)
T ss_pred CCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHH
Confidence 999999987643221110 10 00000000 0000000000
Q ss_pred CHHHHHHHHHc-----CCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC
Q 015230 169 DVSALENLFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 241 (411)
Q Consensus 169 d~~~l~~~~~~-----~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~ 241 (411)
..+.+++.+++ .++++++||+||+ ++.+|++.++++|+++|+++|++||+++|+|||++|| |+|.+++.+++|
T Consensus 565 ~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~g 644 (817)
T PLN02974 565 YRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLG 644 (817)
T ss_pred HHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcC
Confidence 02556777753 3468999999995 8999999999999999999999999999999999999 999999999999
Q ss_pred CCcchhhhhhhccCC-cccccccccHHHHHHhcCC---CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH---
Q 015230 242 VTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT--- 314 (411)
Q Consensus 242 ~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~--- 314 (411)
+.|||+|++|+++|| +|+|.+++++++.+.+... ....+++|++++|++|+++.+.|+.++++++.+++.++.
T Consensus 645 v~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l 724 (817)
T PLN02974 645 CKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRL 724 (817)
T ss_pred CCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999 6999999999999988521 245688999999999999999999998875555544444
Q ss_pred -HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCC-CcchhcccchHHHHHHHHHHH-HcCeEeccCCCcceee--e
Q 015230 315 -GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY-NFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFT--S 389 (411)
Q Consensus 315 -~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~--~ 389 (411)
.++.+.|.+....++.+.++++.|+++.+++.++... .+ ....+..+.+.++ ++|+++++.+ +.+++ |
T Consensus 725 ~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~------~~~~a~~v~~~~~~~~Gl~~r~~G-nvi~l~pP 797 (817)
T PLN02974 725 RELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGY------SSLYARSVVRRLRREDGIYARPLG-NVVYLMCG 797 (817)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCccccc------chHHHHHHHHHHHHhCCEEEEecC-CEEEEeCC
Confidence 5555666443456788999999999999999753211 11 1234567888888 9999999875 45554 7
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 015230 390 LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~ 408 (411)
+.++++++++++++|.+.+
T Consensus 798 ~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 798 PTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999876
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=372.83 Aligned_cols=366 Identities=28% Similarity=0.439 Sum_probs=309.4
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.||++|+||.++++++++||+||++.+++.+++++.. ...++.+.+.++++++++.. +.++
T Consensus 20 ~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~ 98 (396)
T PRK02627 20 RLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELS-GMDK 98 (396)
T ss_pred CCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhc-CCCE
Confidence 35889999999999999999999999999999999999999999999998742 22356888999999999886 6689
Q ss_pred EEEeCChHHHHHHHHHHHHhccCC-----cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+++++||++|++.++++++.+.++ ++++++.++|||.........+......... .. ...+..++++|
T Consensus 99 v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~d 171 (396)
T PRK02627 99 VFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFE---PL----VEGFIYVPFND 171 (396)
T ss_pred EEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCC---CC----CCCceEeCCCC
Confidence 999999999999999988777655 7899999999999888777766532221110 00 12345567889
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhh
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~ 248 (411)
++++++.+. +++++|+++|+++++|...++++++++|.++|++||+++|+||+|+|| ++|..+..+..++.||+++
T Consensus 172 ~~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t 248 (396)
T PRK02627 172 IEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMT 248 (396)
T ss_pred HHHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEE
Confidence 999999885 478999999999999988888999999999999999999999999999 8887666677788999999
Q ss_pred hhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 249 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 249 ~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
|||++++|+|+||+++++++++.+.. ..+..+++.++++++++.++++.++.+++.++++++.+++++.|+++...+
T Consensus 249 ~sK~~~~G~rig~~~~~~~~~~~~~~---~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (396)
T PRK02627 249 LAKGLGGGVPIGAVLAKEKVADVFTP---GDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKY 325 (396)
T ss_pred EcchhhCCcccEEEEEcHHHHhccCC---CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998887763 235568899999999999999988778889999999999999999987666
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
+....+++.|+++++++.. +..++.+.|.++||++.+++.+.+|+ ++.++++++++++++|++
T Consensus 326 ~~~~~~~~~g~~~~i~~~~---------------~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 390 (396)
T PRK02627 326 PGIKEVRGLGLMIGIELDR---------------PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEE 390 (396)
T ss_pred CCeeeeccCcEEEEEEecC---------------cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 6666677789999998721 13688999999999999987677787 468899999999999999
Q ss_pred HHHhC
Q 015230 407 VLRQI 411 (411)
Q Consensus 407 ~~~~~ 411 (411)
+++++
T Consensus 391 ~l~~~ 395 (396)
T PRK02627 391 VLKEL 395 (396)
T ss_pred HHHhh
Confidence 98763
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=338.20 Aligned_cols=386 Identities=21% Similarity=0.318 Sum_probs=318.0
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCCCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.+|+.+.+++|.+++|++|++|+|+++|. .--||+||++.+|...++.... ...+......+.++.|...+|+.+.+
T Consensus 28 sDP~kivRaq~QYmfDE~g~~yLDCInNV--aHvghchp~VV~A~~kQmat~~tN~RFlhd~lv~cA~~l~stlPeLsvc 105 (452)
T KOG1403|consen 28 SDPLKIVRAQGQYMFDEEGTRYLDCINNV--AHVGHCHPEVVRAGAKQMATISTNNRFLHDELVQCARTLTSTLPELSVC 105 (452)
T ss_pred CCchhhehhccceeeccCcccHHHHhhhh--hhcccCCHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHhhcCCCceEE
Confidence 36999999999999999999999999997 7789999999999999998853 33455666688899999999999999
Q ss_pred EEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC-CCCCCCCceeecCCC------
Q 015230 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG-VPKGATYETLTAPFN------ 168 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 168 (411)
+|+|||+||+++||+++|.++++.++|+.+.+|||+....+..+...+..-.....+. +.--+.+++++-.+.
T Consensus 106 ~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~ 185 (452)
T KOG1403|consen 106 FFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPD 185 (452)
T ss_pred EEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCc
Confidence 9999999999999999999999999999999999999887776543211100000000 000112223322221
Q ss_pred -C-----HHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Cccc
Q 015230 169 -D-----VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQ 237 (411)
Q Consensus 169 -d-----~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~ 237 (411)
| .+.+++.+.. ....+++++.|+.++.||.+.||.+|++.+++..|.+|.+.|.||+|.|| |.|. .+++
T Consensus 186 a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWaf 265 (452)
T KOG1403|consen 186 ADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAF 265 (452)
T ss_pred ccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhh
Confidence 1 3445555543 23568899999999999999999999999999999999999999999999 9985 4567
Q ss_pred cccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015230 238 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL 317 (411)
Q Consensus 238 ~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~ 317 (411)
+.+++.|||+|++|.+++|.|++.++.++++.+.+...... .++|+++||++||++++.++..++++++++.++.+.++
T Consensus 266 q~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~-YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L 344 (452)
T KOG1403|consen 266 QTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVE-YFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKL 344 (452)
T ss_pred hhhccccchheecccCCCCCeeeEEeccHHHHHHhccccce-ehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999753333 34699999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCCcce----eeecCC
Q 015230 318 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFEAG----FTSLAH 392 (411)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~----~~~~~~ 392 (411)
...|+++..+++.+.+++|.|+|+.+++.++.. .++|+...+..+...|++. +|+++..+++.. -+|.+.
T Consensus 345 ~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~-----tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCF 419 (452)
T KOG1403|consen 345 EVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRK-----TRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCF 419 (452)
T ss_pred HHHHHHHhhhccceeccccceEEEeeeeecccc-----cCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCccc
Confidence 999999999999999999999999999976532 2347777888888888887 799998876553 338999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 015230 393 SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~ 410 (411)
++++.++++..|+++|.-
T Consensus 420 neena~e~v~~ld~iLT~ 437 (452)
T KOG1403|consen 420 NEENADEFVLGLDEILTV 437 (452)
T ss_pred ChhhHHHHHHHHHHHHHH
Confidence 999999999999988763
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=366.63 Aligned_cols=368 Identities=24% Similarity=0.356 Sum_probs=306.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+.+.+++|++++|.||++|+||.+++++..+||+||++.+++.++++..... .+..+...++++.+++.++ .+++
T Consensus 19 ~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~ 97 (401)
T TIGR01885 19 LPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFG-YDKV 97 (401)
T ss_pred CCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcC-CCEE
Confidence 377889999999999999999999999999999999999999999999874322 1356778899999998884 6799
Q ss_pred EEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 96 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
++++||++|++.|+++++.+ +++..|+.+..+|||.+..++..++....... .... ...+..++|
T Consensus 98 ~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~ 170 (401)
T TIGR01885 98 LPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTN---FGPY----VPGFKKIPY 170 (401)
T ss_pred EEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccc---cCCC----CCCceEeCC
Confidence 99999999999999998765 34678999999999998888777664221110 1100 123567889
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~ 246 (411)
+|++++++.+++.++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|+ ++|..+..+..++.||+
T Consensus 171 ~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di 250 (401)
T TIGR01885 171 NNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDI 250 (401)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCE
Confidence 99999999998655678999999999999999999999999999999999999999999999 88877666667888999
Q ss_pred hhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+++||++++| +|+|++++++++++.+.. ..+..++++++++++++.++++.++++++.++.+++.+++++.|+++.
T Consensus 251 ~~~gK~l~~g~~~ig~v~~~~~i~~~~~~---~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~ 327 (401)
T TIGR01885 251 VLLGKALSGGVYPVSAVLADDDVMLTIKP---GEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP 327 (401)
T ss_pred EEeeccccCCCCCcEEEEEcHHHHhhccC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcc
Confidence 9999999965 899999999999888763 234568889999999999999999877888999999999999999873
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
.+.+..+++.|.+..+.+.... ....+.++.+.|.++||++.+.+.+.+|+ ++.+|+++|++++++
T Consensus 328 --~~~~~~~~g~g~~~~i~~~~~~----------~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~ 395 (401)
T TIGR01885 328 --KPIITEVRGRGLLNAIVIDESK----------TGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEI 395 (401)
T ss_pred --CCceeEEeecCeeEEEEeccCc----------chhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHH
Confidence 3555567788999998884321 01245789999999999999887677777 578999999999999
Q ss_pred HHHHH
Q 015230 404 AEKVL 408 (411)
Q Consensus 404 l~~~~ 408 (411)
|++++
T Consensus 396 l~~~l 400 (401)
T TIGR01885 396 IKKVI 400 (401)
T ss_pred HHHHh
Confidence 99876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=366.73 Aligned_cols=371 Identities=25% Similarity=0.374 Sum_probs=304.8
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
+.|+++.+++|+++||.||++|+||.+++++.++||+||++++++.++++...... +..+..+.+.+.+.+.. +.++
T Consensus 12 ~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 90 (400)
T PTZ00125 12 PLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF-GYDK 90 (400)
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC-CCCE
Confidence 35788999999999999999999999999999999999999999999998743221 23556666777776655 5689
Q ss_pred EEEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 95 VRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
++|++||++|++.||++++.+ .++.+|++++.+|||.+...+...+........ ... ......++
T Consensus 91 ~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~ 163 (400)
T PTZ00125 91 VLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNF---GPF----VPGFELVD 163 (400)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccC---CCC----CCCceEeC
Confidence 999999999999999988643 145789999999999998887776542211111 000 11345667
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
++|++++++.++ .+++++|++||+++++|.+.++++|+++|.++|++||+++|+||+|+|+ ++|..+..+.+++.||
T Consensus 164 ~~d~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd 241 (400)
T PTZ00125 164 YNDVEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPD 241 (400)
T ss_pred CCCHHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCC
Confidence 889999999986 3479999999999999999999999999999999999999999999999 8887666667888999
Q ss_pred hhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 246 ~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
++++||++++| +|+|++++++++++.+... ....+++.++++++++.++++.+.++++.++.+++.+++++.|+++
T Consensus 242 ~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l 318 (400)
T PTZ00125 242 IVLLGKALSGGLYPISAVLANDDVMLVIKPG---EHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKEL 318 (400)
T ss_pred EEEEcccccCCCcCcEEEEEcHHHHhhccCC---CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999977 5999999999999887632 2456889999999999999998877788899999999999999988
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTIT 402 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~ 402 (411)
...++....+++.|.++++.+... +......+.+.|.++||++.|++.+.+|+. +.+++++++++++
T Consensus 319 ~~~~~~~~~~~~~g~~~~v~~~~~-----------~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~ 387 (400)
T PTZ00125 319 LKKSPWVKEIRGKGLLNAIVFDHS-----------DGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALE 387 (400)
T ss_pred HhcCCCeEEEecccEEEEEEEccC-----------cchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHH
Confidence 655666666778899999988431 123456788999999999999877778884 7799999999999
Q ss_pred HHHHHHHhC
Q 015230 403 AAEKVLRQI 411 (411)
Q Consensus 403 ~l~~~~~~~ 411 (411)
+|.++++++
T Consensus 388 ~l~~~l~~~ 396 (400)
T PTZ00125 388 IIKKVLKSF 396 (400)
T ss_pred HHHHHHHHH
Confidence 999988763
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=363.83 Aligned_cols=364 Identities=24% Similarity=0.336 Sum_probs=300.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+.+.+++|+++||.||++|+||.+++++.++||+||++.+++.+++++.... ....+...++++.+++..+ .+++
T Consensus 23 ~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~ 101 (401)
T PRK00854 23 LDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTG-SHKV 101 (401)
T ss_pred CCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC-CCEE
Confidence 477899999999999999999999999999999999999999999999985322 2456778889999998875 5799
Q ss_pred EEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 96 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
++++||++|++.||++++.+ +++++||++..+|||.+..+..+++.+..... +. ....++..+++
T Consensus 102 ~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~ 174 (401)
T PRK00854 102 LPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGG------FG-PFTPGFRVVPF 174 (401)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccccc------CC-CCCCCeEEeCC
Confidence 99999999999999998765 24578999999999998877665544221110 10 01234567889
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~ 246 (411)
+|++++++.+. +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|+ ++|..+..++.++.||+
T Consensus 175 ~d~~~le~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~ 251 (401)
T PRK00854 175 GDAEALEAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADV 251 (401)
T ss_pred CCHHHHHHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCE
Confidence 99999999886 468999999999999999999999999999999999999999999999 87766656667888999
Q ss_pred hhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+++||++++| +|+|++++++++++.+.. ..++.+++.++++++++.++++.++++++.++++++.+++.+.|+++.
T Consensus 252 ~~~~K~l~gg~~~ig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~ 328 (401)
T PRK00854 252 TLIGKALSGGFYPVSAVLSNSEVLGVLKP---GQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIR 328 (401)
T ss_pred EEecccccCCccCeEEEEEcHHHHhcccC---CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999987 799999999999887763 235568889999999999999988777789999999999999999873
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~ 403 (411)
. .....+++.|.++.+++... ......+.+.|+++||++.+.+.+.+|+. +.+|+++|++++++
T Consensus 329 ~--~~~~~~~g~g~~~~i~~~~~------------~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~ 394 (401)
T PRK00854 329 S--NIVREVRGRGLMLAVELEPE------------AGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQ 394 (401)
T ss_pred c--CceEEEeccceEEEEEEecC------------chhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHH
Confidence 2 23345677788888877432 12346889999999999987665677774 68899999999999
Q ss_pred HHHHHH
Q 015230 404 AEKVLR 409 (411)
Q Consensus 404 l~~~~~ 409 (411)
|++++.
T Consensus 395 l~~~l~ 400 (401)
T PRK00854 395 IAKVLA 400 (401)
T ss_pred HHHHhh
Confidence 998875
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=360.13 Aligned_cols=360 Identities=27% Similarity=0.351 Sum_probs=297.9
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+++.+++|+++||.||++|+||.++++...+|| ||++++++.++++....+ .+..+.+.++++.+... ....+
T Consensus 11 ~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~--~~~~~ 87 (375)
T PRK04260 11 AAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD--KDYLA 87 (375)
T ss_pred CCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC--cCCEE
Confidence 47889999999999999999999999988899999 999999999999874322 23466667777766432 22357
Q ss_pred EEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH
Q 015230 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 175 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 175 (411)
+|++||++|++.|+++++.++++++|++++++|||++..++..++......... ... ..+...+++|++++++
T Consensus 88 ~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~dl~~l~~ 160 (375)
T PRK04260 88 FFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFG--DGV-----PHFSYAIFNDLNSVKA 160 (375)
T ss_pred EEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCC--CCC-----CCeEEeCCCCHHHHHH
Confidence 999999999999999998888889999999999999888776665532221111 011 1122345679999998
Q ss_pred HHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc
Q 015230 176 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 254 (411)
Q Consensus 176 ~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~ 254 (411)
.+. +++++|++||+++++|.+.++.+|+++|.++|++||+++|+||+|+|+ +.|..+..+.+++.||++||||+++
T Consensus 161 ~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~ 237 (375)
T PRK04260 161 LVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLA 237 (375)
T ss_pred hcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEeccccc
Confidence 775 468999999999999999999999999999999999999999999999 8777666667788999999999999
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+|+|+|++++++++.+.+.. ..+.+|+++++++++++.++++.++.+++++++++..+++++.++++..+++....+
T Consensus 238 ~G~~ig~~~~~~~~~~~~~~---~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (375)
T PRK04260 238 NGVPVGAMLAKSSLGGAFGY---GSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTV 314 (375)
T ss_pred CCcceEEEEEcHHHHhhcCC---CCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE
Confidence 99999999999999888763 235678999999999999999998778889999999999999999987777766677
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~ 408 (411)
++.|+++|+++... ..++.+.|.++||++.+.+.+.+|+ +..++++++++++++|++++
T Consensus 315 ~~~g~~~~~~~~~~---------------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 315 RGLGYMIGIETTAD---------------LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred eccceEEEEEecCc---------------HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 78899999998321 2578999999999999876666776 58889999999999998763
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=342.87 Aligned_cols=362 Identities=30% Similarity=0.447 Sum_probs=295.2
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|.+++|.+|++|+||.++++.+++||+||.+.+++.++++.... ..++.+...++++++++.++ .++
T Consensus 8 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~ 86 (379)
T TIGR00707 8 RLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG-ADR 86 (379)
T ss_pred CCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC-CCE
Confidence 468899999999999999999999999999999999999999999999987421 23567888999999999984 569
Q ss_pred EEEeCChHHHHHHHHHHHHhccC-----CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+++++||++|++.++++++.+++ +++|++++++||+....+....+....... ..+ ...+....+++|
T Consensus 87 ~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~d 159 (379)
T TIGR00707 87 VFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKG-----FEP--LVPGFSYAPYND 159 (379)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhcc-----CCC--CCCCceeeCCCC
Confidence 99999999999999998765544 689999999999988877766654221100 000 112344566779
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhh
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~ 248 (411)
++++++.++ +++++++++|+++++|...++.+++++|.++|++|++++|+||+|++| +.|........+..||+++
T Consensus 160 ~~~l~~~~~---~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t 236 (379)
T TIGR00707 160 IESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIIT 236 (379)
T ss_pred HHHHHHHhh---hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEE
Confidence 999999886 357899999999989988788888999999999999999999999988 7665444455677899999
Q ss_pred hhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 249 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 249 ~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
|||++++|+|+||+++++++++.+... ....+++.++++++++.++++.++.+++.++++++.++++++|+++....
T Consensus 237 ~sK~~~~G~riG~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (379)
T TIGR00707 237 LAKGLGGGVPIGATLAKEEVAEAFTPG---DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNY 313 (379)
T ss_pred EcccccCCcccEEEEEcHHHHhhhcCC---CCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998888742 23457788999999999999987767788999999999999999876554
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
+. ...++.|.++++.+.+. ..++.+.|.++||++.+.+.+.+|++ +.+|++++++++++|++
T Consensus 314 ~~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 377 (379)
T TIGR00707 314 PN-KEVRGKGLMLGIELEAP---------------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEE 377 (379)
T ss_pred CC-CccccCceEEEEEecCc---------------HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 43 23445688888877421 26888999999999999876678885 56899999999999987
Q ss_pred HH
Q 015230 407 VL 408 (411)
Q Consensus 407 ~~ 408 (411)
++
T Consensus 378 ~~ 379 (379)
T TIGR00707 378 AI 379 (379)
T ss_pred hC
Confidence 63
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=267.97 Aligned_cols=369 Identities=20% Similarity=0.233 Sum_probs=296.1
Q ss_pred EEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHH-----HHHcCCC--CCCCCHHHHHHHHHHHhhCC-CC
Q 015230 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE-----TMKKGTS--FGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 21 ~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~-----~l~~~~~--~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
-..++-|.+++|.||+.++|..+..++.++|++||.+..++.. .+-+-.. .-.+.++.+.+.+-+....| +.
T Consensus 61 dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~ 140 (484)
T KOG1405|consen 61 DYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQ 140 (484)
T ss_pred hhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchH
Confidence 3468889999999999999999999999999999998887532 2222111 12246667777777888888 89
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc--------------------------cCCcEEEEEeCCcCCCchhhhhhcC-CCCcc
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF--------------------------TGRERIIKFEGCYHGHADPFLVKAG-SGVAT 145 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~--------------------------~~~~~vi~~~~~~~~~~~~~~~~~g-~~~~~ 145 (411)
++|+..-+|+.|++.|++.++.+ .+.-.|+.|.++|||++.+.+..+. +++++
T Consensus 141 ~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHK 220 (484)
T KOG1405|consen 141 KQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHK 220 (484)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccc
Confidence 99999999999999999987422 0123699999999999999888775 57888
Q ss_pred cCCCCCCCCCCCCCCceeecC----CC------CHHHHHHHHHcCC---CcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 146 LGLPDSPGVPKGATYETLTAP----FN------DVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~----~~------d~~~l~~~~~~~~---~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
+.+|-+++-...+..--+.++ +| +++++|+.|.++. ..++++|+||.+++||....+++|++.|+++
T Consensus 221 ldiPaFdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi 300 (484)
T KOG1405|consen 221 LDIPAFDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDI 300 (484)
T ss_pred cCCCCCCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHH
Confidence 887766654332222222221 11 3778888887653 3688999999999999999999999999999
Q ss_pred HHHhCCEEEEecccccc-ccccCccccccCCC--cchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCH
Q 015230 213 TKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288 (411)
Q Consensus 213 ~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~--~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 288 (411)
|+||++.+|+||||+|. .+|.+++.++|++. ||++||||-|. || +.. . +.+++..++.+++||.+.|
T Consensus 301 ~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gG----ffh-~----~~frpn~pYrifNTWmGdP 371 (484)
T KOG1405|consen 301 TKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGG----FFH-D----EEFRPNEPYRIFNTWMGDP 371 (484)
T ss_pred HHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCc----ccc-C----cccCCCchHHHhhhhcCCh
Confidence 99999999999999999 89999999999885 89999999987 44 322 2 2234445666788999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCC-ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHH
Q 015230 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 367 (411)
Q Consensus 289 ~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (411)
.-.....++++.+.++.+.++.+..++++..+|.++..++|. .-..+|+|.|+.+++++. ..-+++
T Consensus 372 ~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~-------------~~Rdk~ 438 (484)
T KOG1405|consen 372 SKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSG-------------SIRDKL 438 (484)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCCh-------------HHHHHH
Confidence 988888888999988999999999999999999999999884 456789999999999543 344689
Q ss_pred HHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 368 YRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 368 ~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...++-+|+.+..++...+|+ ++..++.+.+-++++++++++.+
T Consensus 439 i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~l 484 (484)
T KOG1405|consen 439 ILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILAGL 484 (484)
T ss_pred HHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhccC
Confidence 999999999999988777665 68889999999999999998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=280.43 Aligned_cols=347 Identities=20% Similarity=0.299 Sum_probs=261.1
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCC------CCCCCHHHHHHHHHHHhhCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS------FGAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~------~~~~~~~~~~l~~~l~~~~~ 90 (411)
.+++.++.|++++ .+|++++||.++ +++|+ .||++++++.+++++ +.+ +.++.+.+.++.+.+++.++
T Consensus 93 ~~~~~~~~G~~i~-~~G~~~id~~s~---~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~ 168 (481)
T PLN02822 93 PPVLESAAGPHTI-INGKDVVNFASA---NYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG 168 (481)
T ss_pred CCceecCCCCeEE-ECCceEEEeECC---CcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC
Confidence 4478889999999 899999999998 78888 899999999999998 432 23457778999999999998
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
..+.+++++|++ ++..+++ .+.+++++|++++.||........+.+ ..+..++|+|.
T Consensus 169 ~~~~i~~s~G~~-a~~sai~---a~~~~gd~Ii~d~~~H~s~~~~~~ls~-------------------~~~~~~~~nd~ 225 (481)
T PLN02822 169 TPDSILYSYGLS-TIFSVIP---AFCKKGDIIVADEGVHWGIQNGLYLSR-------------------STIVYFKHNDM 225 (481)
T ss_pred CCCEEEECCHHH-HHHHHHH---HhCCCCCEEEEeCCccHHHHHHHHHcC-------------------CeEEEECCCCH
Confidence 778888887666 6777777 567777888899999976544443433 24667888899
Q ss_pred HHHHHHHHcCC------CcE-EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCcccccc
Q 015230 171 SALENLFENNK------GEI-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYF 240 (411)
Q Consensus 171 ~~l~~~~~~~~------~~~-~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~ 240 (411)
++++..+++.. .++ ++|++|++++++|.+.+ +++|.++|++||++||+||+|+ |. ++|.. ..+++
T Consensus 226 ~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~ 300 (481)
T PLN02822 226 ESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHF 300 (481)
T ss_pred HHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHc
Confidence 88888776421 223 79999999999999999 9999999999999999999997 32 33433 45677
Q ss_pred CC---Ccchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCC--CHHHHHHHHHHHHHHhc-CChHHHHHH
Q 015230 241 GV---TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG--NPLAMTAGIHTLKRLKE-PGTYEYLNK 312 (411)
Q Consensus 241 ~~---~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~a~~~~~l~~~~~-~~~~~~~~~ 312 (411)
++ .+|++ +|||+++. ..||+++++++++.++... .+.+++. ++..++++.++++.++. +++++++++
T Consensus 301 ~v~~~~~dii~~s~sKalg~--~GG~i~g~~~ii~~~~~~~---~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~ 375 (481)
T PLN02822 301 GVPIEKIDIITAAMGHALAT--EGGFCTGSARVVDHQRLSS---SGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKE 375 (481)
T ss_pred CCCCCCCeEEEecchhhhhh--CCeEEEcCHHHHHHHHhcC---CceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 76 57875 58999983 1278889999998887432 3335544 47788888889988766 678899999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC--------
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------- 383 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~-------- 383 (411)
+.+++++.|++.. ++.....+.+.++++.+.+... . ...+.....++++.|. ++||++.++.+
T Consensus 376 ~~~~l~~~L~~~~---g~~~~~~~~spi~~l~l~~~~~-~----~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~ 447 (481)
T PLN02822 376 NIALLHKGLSDIP---GLSIGSNTLSPIVFLHLEKSTG-S----AKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRL 447 (481)
T ss_pred HHHHHHHHHHhcC---CcccCCCCCCCEEEEEeCCCcc-c----ccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCC
Confidence 9999999998752 2222223457788888743200 0 0012233567888887 78999997632
Q ss_pred -cceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 384 -EAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 -~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|+ +..+|+++|++++++|++++..
T Consensus 448 ~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 448 PVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 23665 5679999999999999998765
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=267.15 Aligned_cols=340 Identities=18% Similarity=0.238 Sum_probs=236.5
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccC-CCcHHHHHHHHHHHHcC--CCCC-----CCCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKKG--TSFG-----APCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g-~~~~~v~~a~~~~l~~~--~~~~-----~~~~~~~~l~~~l~~~~ 89 (411)
.++.+.+++|+++||.+|++|+||.++ +++| |+||++++|+.+++++. .... ...+...++++.+++.+
T Consensus 28 ~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~ 104 (402)
T PRK07505 28 NGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF 104 (402)
T ss_pred ccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh
Confidence 467899999999999999999999997 8999 89999999999999873 1211 23567789999999888
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHh--cc-CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARA--FT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~--~~-~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
+. +.+++++|++|++.++++++. ++ ++.++|+++.+||+...... .... ...++..++
T Consensus 105 ~~--~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~----------------~~~~-~~~~v~~~~ 165 (402)
T PRK07505 105 GA--SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILK----------------GICA-DETEVETID 165 (402)
T ss_pred CC--CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhh----------------hhhh-cCCeEEEeC
Confidence 65 666667899999999987643 23 45678899999997321100 0000 013567788
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc--cc-ccccCccccccCC-
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT--GF-RLAYGGAQEYFGV- 242 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~--g~-~~g~~~~~~~~~~- 242 (411)
++|++++++.++. +...+++++|++++ |.+.+ +++|.++|++||++||+||+|+ ++ ++|..+..++.+.
T Consensus 166 ~~d~~~l~~~~~~--~~~~~vl~~p~~~~-G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~ 238 (402)
T PRK07505 166 HNDLDALEDICKT--NKTVAYVADGVYSM-GGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYR 238 (402)
T ss_pred CCCHHHHHHHHhc--CCCEEEEEeccccc-CCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCC
Confidence 8999999998864 35778899998876 55566 8999999999999999999994 56 6676555566665
Q ss_pred Ccchh----hhhhhccCCccccccc-ccHHHHHHhcCCCCcccccCC--CCCHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015230 243 TPDLT----TLGKIIGGGLPVGAYG-GRRDIMEMVAPAGPMYQAGTL--SGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 315 (411)
Q Consensus 243 ~~d~~----~~sK~~~~G~~~g~~~-~~~~~~~~~~~~~~~~~~~t~--~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~ 315 (411)
.||.+ |+||+++++ .|+++ .++++++.+.... ...++ +.++++++++.++++.+.++.+.+. ..
T Consensus 239 ~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~---~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~----~~ 309 (402)
T PRK07505 239 LNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYA---GPLAFSQSLNVAALGAILASAEIHLSEELDQL----QQ 309 (402)
T ss_pred CCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhC---CCceeCCCCCHHHHHHHHHHHHHHhccCcHHH----HH
Confidence 56643 899999852 36665 4778888776422 22233 3456889999898886654443322 22
Q ss_pred HHHHHHHHHHHhcCCceEEeeecceE-EEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------ccee
Q 015230 316 ELTQGIIDAGKKAGHAICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGF 387 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~ 387 (411)
+++++++.+..... ...++.+.++ ++.+ +....+.++.+.|.++||++.+..+ +.+|
T Consensus 310 ~l~~~~~~~~~~~~--~~~~g~~~~i~~~~~-------------~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lR 374 (402)
T PRK07505 310 KLQNNIALFDSLIP--TEQSGSFLPIRLIYI-------------GDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLR 374 (402)
T ss_pred HHHHHHHHHHHHHH--hcCCCCCCCEEEEEe-------------CCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEE
Confidence 33333322211000 1123334433 2222 1122357899999999999987521 3466
Q ss_pred e--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 388 T--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 388 ~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+ ++.+|++++++++++|++++++
T Consensus 375 i~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 375 IMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred EecCccCCHHHHHHHHHHHHHHHHh
Confidence 6 4668999999999999998764
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=251.99 Aligned_cols=329 Identities=22% Similarity=0.319 Sum_probs=255.3
Q ss_pred CcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCC------CCCCHHHHHHHHHHHhhCCCCCEEEEe
Q 015230 27 GSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFV 98 (411)
Q Consensus 27 g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~ 98 (411)
+.+++ .+|++++||.|| +|+|+ +||++++++.++++. +.+. .+....+.+|.+.+++.+ +.+..++.
T Consensus 31 ~~~~~-~~~~~~~nf~SN---dYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~-g~e~al~f 105 (388)
T COG0156 31 GLAIR-ADGRKVLNFCSN---DYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL-GAEAALLF 105 (388)
T ss_pred Cccee-cCCceeEeeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh-CCCcEEEE
Confidence 45554 669999999999 99999 999999999999999 3332 345777888888888887 66667777
Q ss_pred CChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH
Q 015230 99 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 178 (411)
Q Consensus 99 ~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 178 (411)
+||-.|+..++. .+.+++++|+.+.-.|........+++ .+...++|||+++||+.++
T Consensus 106 ~SGy~AN~~~i~---~l~~~~dli~~D~lnHASiidG~rls~-------------------a~~~~f~HnD~~~Le~~l~ 163 (388)
T COG0156 106 SSGFVANLGLLS---ALLKKGDLIFSDELNHASIIDGIRLSR-------------------AEVRRFKHNDLDHLEALLE 163 (388)
T ss_pred cccchhHHHHHH---HhcCCCcEEEEechhhhhHHHHHHhCC-------------------CcEEEecCCCHHHHHHHHH
Confidence 789999999998 667778999999999986544444433 4678899999999999998
Q ss_pred cCCC---cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcc-----hhh
Q 015230 179 NNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPD-----LTT 248 (411)
Q Consensus 179 ~~~~---~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d-----~~~ 248 (411)
+.+. +.++|++|.++++.|.+.| +++|.++|+||+++|++||+|+ |+ .....+..+++|+.++ ++|
T Consensus 164 ~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gT 239 (388)
T COG0156 164 EARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGT 239 (388)
T ss_pred hhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEE
Confidence 7321 4689999999999999999 9999999999999999999996 66 3323344556666533 459
Q ss_pred hhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 249 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 249 ~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
|||+|++ --|++.++..+++.+....+.+.+ +.+.+|..++++.++++.+++ .+.+++++++..++++.++..
T Consensus 240 lsKAlGs--~Gg~v~g~~~~~d~L~~~ar~~if-StalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~--- 313 (388)
T COG0156 240 LGKALGS--SGGYIAGSAALIDYLRNRARPFIF-STALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL--- 313 (388)
T ss_pred chhhhcc--cCceeeCcHHHHHHHHHhCCceec-cCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc---
Confidence 9999995 245668899999998865555555 557788888888999999887 788999999999999666654
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc-------eee--ecCCCHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSSDDIQ 398 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~-------~~~--~~~~t~~~i~ 398 (411)
++.. ......++.+.+ .+...+.++...|+++||++.+..++. +|+ +..+|+++|+
T Consensus 314 -~~~~-~~s~s~I~pv~~-------------gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~ 378 (388)
T COG0156 314 -GLVL-LPSESPIIPVIL-------------GDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDID 378 (388)
T ss_pred -CCcc-CCCCCCeeeeEe-------------CCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHH
Confidence 2211 122233444544 455567889999999999998876654 454 6889999999
Q ss_pred HHHHHHHHH
Q 015230 399 HTITAAEKV 407 (411)
Q Consensus 399 ~~i~~l~~~ 407 (411)
++++.|.++
T Consensus 379 ~l~~~l~~~ 387 (388)
T COG0156 379 RLAEALSEV 387 (388)
T ss_pred HHHHHHHhh
Confidence 999999865
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=256.04 Aligned_cols=326 Identities=17% Similarity=0.167 Sum_probs=246.2
Q ss_pred CCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCC------CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~ 106 (411)
++++++|.+| +|+|+ .||++++++.+++++. .+. .+....++++.+.+++.+ +.+++++.++|..|+.
T Consensus 101 ~r~~l~FsSn---dYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~-g~e~all~sSGy~AN~ 176 (476)
T PLN02955 101 FKKLLLFSGN---DYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK-KKEDCLVCPTGFAANM 176 (476)
T ss_pred CceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH-CCCcEEEECChHHHHH
Confidence 4689999999 99999 9999999999999983 222 344666777888887777 7778888889999999
Q ss_pred HHHHHHHh-----------ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH
Q 015230 107 GVLRLARA-----------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 175 (411)
Q Consensus 107 ~al~~~~~-----------~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 175 (411)
.++..... ..+++.+|+.+...|........+... ....++..++|||+++|++
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~---------------~~~a~~~~f~HND~~~Le~ 241 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAER---------------QGNVEVFVYRHCDMYHLNS 241 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccc---------------cCCceEEEeCCCCHHHHHH
Confidence 99974310 124566788888888655444333211 0123577889999999999
Q ss_pred HHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc--cCccccccCCCcch----hhh
Q 015230 176 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA--YGGAQEYFGVTPDL----TTL 249 (411)
Q Consensus 176 ~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g--~~~~~~~~~~~~d~----~~~ 249 (411)
.+++.+++.++|++|+++++.|.+.| +++|.++|++||++||+||+|+.+..| ..+..+++++.+|+ .||
T Consensus 242 ~L~~~~~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TL 317 (476)
T PLN02955 242 LLSSCKMKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTL 317 (476)
T ss_pred HHHhCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeC
Confidence 99877667789999999999999999 999999999999999999999733333 34556677776664 699
Q ss_pred hhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 250 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 250 sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
||+++. +.|++++++++++.++.....+.+++ ..++..+++++++++.+.. +..+++++++.+++++.+
T Consensus 318 sKA~G~--~GGfi~gs~~~~~~l~~~~~~~ifSt-alpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~------- 387 (476)
T PLN02955 318 SKAAGC--HGGFIACSKKWKQLIQSRGRSFIFST-AIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALS------- 387 (476)
T ss_pred ccchhc--cCceeecHHHHHHHHHHhCCCCeecc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-------
Confidence 999984 56678889988888876555555545 6667777778888888755 456677888888887631
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc-------eee--ecCCCHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSSDDIQH 399 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~-------~~~--~~~~t~~~i~~ 399 (411)
++.. ...++.+.+ ++...+..+.+.|+++||++.+..++. +|+ +..+|++||++
T Consensus 388 G~~~----~sPI~pI~i-------------g~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~ 450 (476)
T PLN02955 388 GVDI----SSPIISLVV-------------GNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKK 450 (476)
T ss_pred CCCC----CCCEEEEEe-------------CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHH
Confidence 2211 144555544 456667889999999999998876653 454 67899999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|.++...
T Consensus 451 lv~~L~~~~~~ 461 (476)
T PLN02955 451 LITALSSCLDF 461 (476)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=255.98 Aligned_cols=329 Identities=21% Similarity=0.210 Sum_probs=239.5
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-C------CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-S------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 104 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a 104 (411)
.+|+++++|.+| +|+|+ .||++++++.+++++.. + ..+..+...++.+.+++.++ .++.+++++|++|
T Consensus 42 ~~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g-~~~~l~~~sG~~a 117 (402)
T TIGR01821 42 DGAKDVTVWCSN---DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG-KESALVFTSGYVA 117 (402)
T ss_pred CCCeeEEEeEcc---CcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC-CCeEEEECchHHH
Confidence 346899999999 99999 89999999999999832 2 12346678899999999886 4577888889999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-Cc
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GE 183 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~ 183 (411)
++.+++++... .++++++.+..+|+.....+...+. ++..++++|++++++.++... ++
T Consensus 118 n~~ai~~l~~~-~~~~~v~~~~~~h~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~ 177 (402)
T TIGR01821 118 NDATLATLAKI-IPGCVIFSDELNHASMIEGIRHSGA-------------------EKFIFRHNDVAHLEKLLQSVDPNR 177 (402)
T ss_pred HHHHHHHhhCC-CCCCEEEEcchHhHHHHHHHHHcCC-------------------eEEEECCCCHHHHHHHHHhccCCC
Confidence 99999865432 2456777777788655443333222 233456679999999887543 35
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCC--Ccchh--hhhhhccCC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~--~~d~~--~~sK~~~~G 256 (411)
+++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ |+ ..|.. .....++ .+|++ ||||++++
T Consensus 178 ~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~- 251 (402)
T TIGR01821 178 PKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLMHRIDIIEGTLAKAFGV- 251 (402)
T ss_pred CeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhccCCCCCeEEEEechhhhcc-
Confidence 789999999999999998 9999999999999999999997 54 33322 2234443 35765 99999984
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
..||+++++++++.+......+. .+.+.++.+++++.++++.+++ +.++++.+++.+++++.|+++. ++.. .
T Consensus 252 -~GG~i~~~~~~~~~l~~~~~~~~-~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~---~ 324 (402)
T TIGR01821 252 -VGGYIAASRKLIDAIRSYAPGFI-FTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG--IPVI---P 324 (402)
T ss_pred -CCceeecCHHHHHHHHHhCcCce-ecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC--CCcC---C
Confidence 23788889888888764332222 2557888999999999998776 4456667788888888887752 1211 2
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC-------Ccceee--ecCCCHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-------FEAGFT--SLAHSSDDIQHTITAAE 405 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~-------~~~~~~--~~~~t~~~i~~~i~~l~ 405 (411)
..+.++.+.+. ....+.++.+.|.+ +||++.+.. ...+|+ +..+|++|+++++++|+
T Consensus 325 ~~~~i~~i~~~-------------~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~ 391 (402)
T TIGR01821 325 NPSHIVPVIIG-------------DAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALL 391 (402)
T ss_pred CCCCEEEEEeC-------------CHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 34666666552 12234678888875 599997642 234666 57899999999999999
Q ss_pred HHHHhC
Q 015230 406 KVLRQI 411 (411)
Q Consensus 406 ~~~~~~ 411 (411)
++++++
T Consensus 392 ~~~~~~ 397 (402)
T TIGR01821 392 LVWDRL 397 (402)
T ss_pred HHHHHc
Confidence 988763
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=254.48 Aligned_cols=327 Identities=19% Similarity=0.197 Sum_probs=240.7
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~ 105 (411)
+|+++++|.+| +|+|+ +||++++++.+++++.. +. .+..+...++.+.+++.++ .+++++++||++|+
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g-~~~~~~~~SG~~An 118 (406)
T PRK13393 43 GPREVTVWCSN---DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG-KEAALLFTSGYVSN 118 (406)
T ss_pred CCccEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC-CCcEEEeCCcHHHH
Confidence 35899999999 99999 89999999999999842 11 2335578899999999885 46888888899999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC-CCcE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~~ 184 (411)
+.+++.+... .++++|+.+..+|+.....+...+. ++..++++|++++++.++.. ++++
T Consensus 119 ~~ai~~l~~~-~~g~~I~~~~~~H~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~~ 178 (406)
T PRK13393 119 WAALSTLGSR-LPGCVILSDELNHASMIEGIRHSRA-------------------EKRIFRHNDPADLERKLSDLDPHRP 178 (406)
T ss_pred HHHHHHhhcC-CCCCEEEEccchhHHHHHHHHHcCC-------------------eEEEeCCCCHHHHHHHHHhccCCCC
Confidence 9999843221 1346888888999866554433222 24456777999999888754 2367
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCCC--cchh--hhhhhccCCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVT--PDLT--TLGKIIGGGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~~--~d~~--~~sK~~~~G~ 257 (411)
++|+++++++++|.+.+ +++|.++|++|++++|+||+|+ |+ +.|..+ .++.++. +|++ ||||+++.
T Consensus 179 ~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~-- 251 (406)
T PRK13393 179 KLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGV-- 251 (406)
T ss_pred EEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcc--
Confidence 89999999999999999 9999999999999999999997 66 444332 2444443 5665 99999984
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
..||+++++++++.+......+. .+.+.++.+++++.++++.++.. ..+++++++.+++++.|+++. ++. .++
T Consensus 252 ~GG~~~~~~~~~~~l~~~~~~~~-~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~---~~~ 325 (406)
T PRK13393 252 MGGYITGSAALCDFIRSFASGFI-FTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG--IPH---LPN 325 (406)
T ss_pred cCceeeCCHHHHHHHHHhCcCce-ecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC--CCc---CCC
Confidence 23788888888888764332222 36677888899999999887652 234566788888888887752 222 244
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC-------Ccceee--ecCCCHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-------FEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~-------~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
.|.++.+.+. +...+.++.+.|.+ +||++.+.. ...+|+ ++.+|++|+++++++|++
T Consensus 326 ~~~i~~v~~~-------------~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~ 392 (406)
T PRK13393 326 PSHIVPVMVG-------------DPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSE 392 (406)
T ss_pred CCCeEEEEeC-------------CHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 5777666542 12345678888887 599997642 234676 678999999999999999
Q ss_pred HHHh
Q 015230 407 VLRQ 410 (411)
Q Consensus 407 ~~~~ 410 (411)
++.+
T Consensus 393 ~~~~ 396 (406)
T PRK13393 393 IWAR 396 (406)
T ss_pred HHHh
Confidence 8765
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=251.28 Aligned_cols=327 Identities=21% Similarity=0.224 Sum_probs=235.9
Q ss_pred CCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-C------CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-S------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~ 106 (411)
|++++||.++ +|+|+ .||++++++.+++++.. + ..++.+...++.+.+++.++ .++.++.++|++|+.
T Consensus 45 ~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-~~~~~~~~sG~~an~ 120 (407)
T PRK09064 45 EREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG-KEAALVFTSGYVSND 120 (407)
T ss_pred CceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC-CCcEEEECcHHHHHH
Confidence 5899999999 99999 79999999999998742 1 12356778899999998886 456677778999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIA 185 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~ 185 (411)
.+++++... .++.+++.+..+|+.....+...+ .+...++++|++++++.+++.. ++++
T Consensus 121 ~ai~~l~~~-~~~~~i~~~~~~h~s~~~~~~~~~-------------------~~~~~~~~~d~~~le~~l~~~~~~~~~ 180 (407)
T PRK09064 121 ATLSTLAKL-IPDCVIFSDELNHASMIEGIRRSR-------------------CEKHIFRHNDVAHLEELLAAADPDRPK 180 (407)
T ss_pred HHHHHHhCC-CCCCEEEEeCcchHHHHHHHHHcC-------------------CcEEEECCCCHHHHHHHHHhccCCCCe
Confidence 999865433 245566666555653322222211 1234566779999999987543 4678
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCC--Ccchh--hhhhhccCCcc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLP 258 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~--~~d~~--~~sK~~~~G~~ 258 (411)
+|+++++++++|.+.+ +++|.++|++||++||+||+|+ |+ +.|... .++.++ .+|++ ||||+++. .
T Consensus 181 ~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~--~ 253 (407)
T PRK09064 181 LIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV--M 253 (407)
T ss_pred EEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc--c
Confidence 9999999999999998 9999999999999999999997 64 444332 344444 45766 99999983 2
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
.||+++++++++.+......+. .+.+.++.+++++.++++.++. +..+++++++.+++++.|+++. +... ...
T Consensus 254 GG~~~~~~~~~~~l~~~~~~~~-~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~---~~~ 327 (407)
T PRK09064 254 GGYIAGSAALVDAVRSYAPGFI-FTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAG--IPVM---PNE 327 (407)
T ss_pred CceEecCHHHHHHHHHhCcccc-ccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--CCCC---CCC
Confidence 3788889888887764322222 2556778888999999998876 3446788899999999988752 1211 233
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCCC-------cceee--ecCCCHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~-------~~~~~--~~~~t~~~i~~~i~~l~~~ 407 (411)
+.++.+.+. ....+..+.+.|.+ +||++.+..+ +.+|+ ++.+|++|++++++.|+++
T Consensus 328 ~~iv~i~~~-------------~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 328 SHIVPVMVG-------------DPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CCEEEEEeC-------------CHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 666666552 12334678888875 5999976422 34666 5788999999999999998
Q ss_pred HHhC
Q 015230 408 LRQI 411 (411)
Q Consensus 408 ~~~~ 411 (411)
++++
T Consensus 395 ~~~~ 398 (407)
T PRK09064 395 WARL 398 (407)
T ss_pred HHHc
Confidence 8753
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=246.64 Aligned_cols=333 Identities=18% Similarity=0.176 Sum_probs=240.2
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CC---CCCCHHHHHHHHHHHhhCC---CCCE-EEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SF---GAPCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~---~~~~~~~~~l~~~l~~~~~---~~~~-v~~~~~g~~a~~~ 107 (411)
..++|+..+ .|---.++.+++++.+++..+. .| .+..++++.+++++.+.++ .+++ |++|+|+++|+..
T Consensus 28 ~~vi~l~iG---~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 28 EDVIDLSIG---EPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CCEEEeCCC---CCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 468998888 5533378889999999999853 33 3558899999999999986 3544 9999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
++.. ...+++.||+.+|.|... .....+.|..+..++.... .++.. |++++++.++. ++++
T Consensus 105 ~~~a--~~~pGDeVlip~P~Y~~y-~~~~~~~gg~~v~v~l~~~~~~f~~------------d~~~l~~~i~~---ktk~ 166 (393)
T COG0436 105 AFLA--LLNPGDEVLIPDPGYPSY-EAAVKLAGGKPVPVPLDEEENGFKP------------DLEDLEAAITP---KTKA 166 (393)
T ss_pred HHHH--hcCCCCEEEEeCCCCcCH-HHHHHhcCCEEEEEeCCcCccCCcC------------CHHHHHhhcCc---cceE
Confidence 9974 345678899999999864 4444455554444333111 23322 89999999883 6777
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc--CccccccC---CCcchhhhhhhcc-CCccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYFG---VTPDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~--~~~~~~~~---~~~d~~~~sK~~~-~G~~~ 259 (411)
++++..+|++|.+.. ++.+++|.++|++|+++||+||+|.++ ..+. ....+..+ ....+-+|||.++ .|||+
T Consensus 167 i~ln~P~NPTGav~~-~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv 245 (393)
T COG0436 167 IILNSPNNPTGAVYS-KEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRI 245 (393)
T ss_pred EEEeCCCCCcCcCCC-HHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccce
Confidence 777766666676554 555999999999999999999999998 6552 22222222 1233458999999 79999
Q ss_pred cccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC-CceE
Q 015230 260 GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-HAIC 333 (411)
Q Consensus 260 g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 333 (411)
||++++ +++++.+.. .....+.+.+.+++.++.++|+.-+. +..++.++++.+.+.+.|+++ + +...
T Consensus 246 G~~v~~~~~l~~~~~~---~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~----~g~~~~ 318 (393)
T COG0436 246 GWVVGPPEELIAALRK---LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEI----GGLSVV 318 (393)
T ss_pred eEeecChHHHHHHHHH---HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhc----CCeeec
Confidence 999988 778777752 22344668899999999999875421 444456777777777777765 4 3333
Q ss_pred E-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC-------CcceeeecCCCHHHHHHHHHHH
Q 015230 334 G-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAA 404 (411)
Q Consensus 334 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~-------~~~~~~~~~~t~~~i~~~i~~l 404 (411)
. ...++++|+++... .+..++++.|.++ ||.|.||. .+.+|++++.+.++++++++++
T Consensus 319 ~~p~Ga~Y~~~~i~~~-------------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl 385 (393)
T COG0436 319 KPPEGAFYLFPKIPEL-------------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRL 385 (393)
T ss_pred cCCCeeEEEEeecCCC-------------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHH
Confidence 3 33567777777432 1225666666655 89999973 2458999999999999999999
Q ss_pred HHHHHh
Q 015230 405 EKVLRQ 410 (411)
Q Consensus 405 ~~~~~~ 410 (411)
.+.+..
T Consensus 386 ~~~~~~ 391 (393)
T COG0436 386 ARFLAE 391 (393)
T ss_pred HHHHHh
Confidence 998765
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-30 Score=242.12 Aligned_cols=341 Identities=21% Similarity=0.293 Sum_probs=238.7
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCCC------CCCHHHHHHHHHHHhhCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVP 90 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~~------~~~~~~~~l~~~l~~~~~ 90 (411)
+..+.++.|.++++.+|++++||.++ +|+|+ .+|++++++.++++. +.+++ +..+...++.+.+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g 97 (393)
T TIGR01822 21 ERIITSPQGADIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG 97 (393)
T ss_pred ccccccCCCceEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC
Confidence 56678888999998899999999999 89999 699999999999987 33322 224556777788888875
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
.+++++++||++|+..++... ..+++.|++.++.|++.... ....+.. ...+.++|+
T Consensus 98 -~~~~ii~~~~~~a~~~~~~~l--~~~gd~vi~~~~~~~s~~~~-~~~~~~~-------------------~~~~~~~d~ 154 (393)
T TIGR01822 98 -TEDTILYASCFDANGGLFETL--LGAEDAIISDALNHASIIDG-VRLCKAK-------------------RYRYANNDM 154 (393)
T ss_pred -CCcEEEECchHHHHHHHHHHh--CCCCCEEEEeccccHHHHHH-HHhcCCc-------------------eEEeCCCCH
Confidence 456777789999999877643 45567777777666653332 2222221 122335699
Q ss_pred HHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-c-cccCccccccCC--
Q 015230 171 SALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV-- 242 (411)
Q Consensus 171 ~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~-~g~~~~~~~~~~-- 242 (411)
+++++.++.. ..++++|+++++++++|.+.+ +++|.++|++||++||+||+|+ |+ . .+. ...+..+.
T Consensus 155 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~-~~~~~~~~~~ 229 (393)
T TIGR01822 155 ADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGR-GSHELCGVMG 229 (393)
T ss_pred HHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCC-chHHhcCCCC
Confidence 9999988852 126788999999999999988 9999999999999999999995 44 2 221 11222332
Q ss_pred Ccchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 015230 243 TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 319 (411)
Q Consensus 243 ~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 319 (411)
.+|++ |+||+++ |+|+||+++++++++.+......+.. +.+.++..++++.++++.++. ++.+++++++.+++++
T Consensus 230 ~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 307 (393)
T TIGR01822 230 RVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLF-SNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRE 307 (393)
T ss_pred CCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCcccee-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34554 8999987 46899999999998887642211111 223455666667778877654 5677888999999988
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceee--ec
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SL 390 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~--~~ 390 (411)
.|++. ++... .+.+.++.+.+ ++......+.+.|.++||.+....+ ..+|+ ++
T Consensus 308 ~L~~~----g~~~~-~~~~~~~~i~~-------------~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~ 369 (393)
T TIGR01822 308 RMEAA----GFDIK-PADHPIIPVML-------------YDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISA 369 (393)
T ss_pred HHHHc----CCCCC-CCCCCEEEEEe-------------CCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECC
Confidence 88764 22111 12244544443 1223457899999999999974321 23554 67
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|++++++++++|.+++++
T Consensus 370 ~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 370 AHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998765
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-30 Score=242.90 Aligned_cols=335 Identities=21% Similarity=0.258 Sum_probs=237.4
Q ss_pred EEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhCCCC
Q 015230 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPSI 92 (411)
Q Consensus 21 ~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~~~~ 92 (411)
++.+++|.++++ +|++|+|+.++ .++|+ .+|++++++.+++.... .. .+.....+++.+.+++.++.
T Consensus 25 ~~~~~~g~~~~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~- 99 (385)
T PRK05958 25 PREGGAGRWLVV-DGRRMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGA- 99 (385)
T ss_pred ccccCCCceeEe-CCceEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-
Confidence 689999999996 99999999998 67898 78999999999998721 11 13466788899999988864
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHH
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 172 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 172 (411)
++.+++++|++++..+++.. ..+++.|++ ...+|+.........|. ++..++..|+++
T Consensus 100 ~~~i~~~~g~~~~~~~l~~~--~~~gd~V~~-~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~ 157 (385)
T PRK05958 100 ERALLFSSGYAANLAVLTAL--AGKGDLIVS-DKLNHASLIDGARLSRA-------------------RVRRYPHNDVDA 157 (385)
T ss_pred CcEEEECcHHHHHHHHHHHh--CCCCCEEEE-eCccCHHHHHHHHhcCC-------------------ceEEeCCCCHHH
Confidence 55666677889888777632 334455554 45555544444333333 233344458999
Q ss_pred HHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccc--cCCCcc--
Q 015230 173 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEY--FGVTPD-- 245 (411)
Q Consensus 173 l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~--~~~~~d-- 245 (411)
+++.++..++++++++++++++++|...+ +++|.++|++||+++|+||+|+ ++ ..|... ... ....++
T Consensus 158 l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i 232 (385)
T PRK05958 158 LEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVI 232 (385)
T ss_pred HHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceE
Confidence 99998754335778889899888898877 9999999999999999999996 32 223221 111 122344
Q ss_pred -hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHH
Q 015230 246 -LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 246 -~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~ 323 (411)
+.|+||++++ +.||+++++++.+.+......+ ..+.+.++++++++.++++.+.. +++.+++.++.+++.+.|++
T Consensus 233 ~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~ 309 (385)
T PRK05958 233 LVGTLGKALGS--SGAAVLGSETLIDYLINRARPF-IFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRA 309 (385)
T ss_pred EEEechhhccc--CCcEEEcCHHHHHHHHHhCccc-eecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5689999974 3488888888887765322122 22445678888888888887765 46778888889999888887
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Ccceeeec--CCCH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSS 394 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~~--~~t~ 394 (411)
+ ++. ...+.|.++++.+. ......++.+.|.++||.+.+.. .+.+|+++ .+++
T Consensus 310 ~----~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~ 371 (385)
T PRK05958 310 L----GFQ-LMDSQSAIQPLIVG-------------DNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTE 371 (385)
T ss_pred c----CCC-cCCCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCH
Confidence 5 221 12345778888762 22345689999999999998632 23577754 5799
Q ss_pred HHHHHHHHHHHHHH
Q 015230 395 DDIQHTITAAEKVL 408 (411)
Q Consensus 395 ~~i~~~i~~l~~~~ 408 (411)
+++++++++|++++
T Consensus 372 ~~i~~~l~~l~~~~ 385 (385)
T PRK05958 372 ADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998763
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=241.48 Aligned_cols=341 Identities=23% Similarity=0.302 Sum_probs=238.4
Q ss_pred eEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCC------CCCCHHHHHHHHHHHhhCCC
Q 015230 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPS 91 (411)
Q Consensus 20 ~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~------~~~~~~~~~l~~~l~~~~~~ 91 (411)
..+.+++|.++++.+|+.++||.++ +++|+ .+|++.+++.+.+++. ..+ .+..++++++++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~ 102 (397)
T PRK06939 26 RVITSPQGADITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT 102 (397)
T ss_pred ccccCCCCceEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC
Confidence 3568899999999999999999987 77899 8999999999998763 221 23467888999999998875
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHH
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (411)
.+.+++|+ |++++..+++.. ..+++.|++.++.|++.... ....+. .+..++++|++
T Consensus 103 ~~~i~~ts-G~~a~~~~~~~l--~~~gd~vi~~~~~~~~~~~~-~~~~~~-------------------~~~~~~~~d~~ 159 (397)
T PRK06939 103 EDAILYSS-CFDANGGLFETL--LGKEDAIISDALNHASIIDG-VRLCKA-------------------KRYRYANNDMA 159 (397)
T ss_pred CcEEEEcC-hHHHHHHHHHHh--CCCCCEEEEEhhhhHHHHHH-HHhcCC-------------------ceEEeCCCCHH
Confidence 56666665 588999888643 45667788877777653322 222222 12233445889
Q ss_pred HHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-c-cccCccccccCC--C
Q 015230 172 ALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV--T 243 (411)
Q Consensus 172 ~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~-~g~~~~~~~~~~--~ 243 (411)
++++.+++. ..++++++++++++++|...+ +++|.++|++|+++||+||+|+ |+ . .+.. .....+. .
T Consensus 160 ~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~ 234 (397)
T PRK06939 160 DLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDR 234 (397)
T ss_pred HHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCC
Confidence 999888742 225778888888888888777 9999999999999999999995 54 2 2221 2222333 3
Q ss_pred cchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHH
Q 015230 244 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 320 (411)
Q Consensus 244 ~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 320 (411)
+|++ |+||+++| +|+||+++++++++.+......+.. +.+.++..++++.++++.+.. ++++++++++.+++++.
T Consensus 235 ~~i~~~S~sK~~~g-~r~G~v~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~ 312 (397)
T PRK06939 235 VDIITGTLGKALGG-ASGGYTAGRKEVIDWLRQRSRPYLF-SNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREG 312 (397)
T ss_pred CcEEEEECHHHhCc-cCceEEEeCHHHHHHHHHhCccccc-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4555 89999964 5899999999998888642211111 223345556667777776654 56778888888888888
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Ccceee--ecC
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFT--SLA 391 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~--~~~ 391 (411)
|+++ +... ..+.+.++++.+. ...+..++++.|.++||.+.+.. .+.+|+ +..
T Consensus 313 L~~~----~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~ 374 (397)
T PRK06939 313 MTAA----GFTL-GPGEHPIIPVMLG-------------DAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAA 374 (397)
T ss_pred HHHc----CCCc-CCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCC
Confidence 8775 2211 1233555544431 12334789999999999987532 234676 456
Q ss_pred CCHHHHHHHHHHHHHHHHhC
Q 015230 392 HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~~ 411 (411)
++++++++++++|+++++++
T Consensus 375 ~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 375 HTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988763
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-29 Score=238.70 Aligned_cols=340 Identities=19% Similarity=0.257 Sum_probs=236.6
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCC------CCCCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~------~~~~~~~~~l~~~l~~~~ 89 (411)
+|..+.+++|++++ .+|++++||.++ +++|| .+|.+++++.++++.. ... .+..++++++++++++.+
T Consensus 16 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~ 91 (385)
T TIGR01825 16 SIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFK 91 (385)
T ss_pred cccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHh
Confidence 37789999999999 999999999987 77899 9999999999998752 111 234788999999999988
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+..+.+++ ++|++++..+++.+ ..+++.|++ +..+|..........+.. +..+++.|
T Consensus 92 g~~~~i~~-~sG~~a~~~a~~~~--~~~gd~vi~-~~~~~~~~~~~~~~~g~~-------------------~~~~~~~d 148 (385)
T TIGR01825 92 KTEAALVF-QSGFNTNQGVLSAL--LRKGDIVLS-DELNHASIIDGLRLTKAT-------------------KKIYKHAD 148 (385)
T ss_pred CCCcEEEE-CcHHHHHHHHHHHh--CCCCCEEEE-EccccHHHHHHHHhcCCc-------------------eEEeCCCC
Confidence 65455555 56788988887743 344555554 455554443333333321 12223448
Q ss_pred HHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc---ccccCccccccCCCcc
Q 015230 170 VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 170 ~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~---~~g~~~~~~~~~~~~d 245 (411)
++++++.+++.. .++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ +.+. ....++++.++
T Consensus 149 ~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~ 223 (385)
T TIGR01825 149 MDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDK 223 (385)
T ss_pred HHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcC
Confidence 888988887542 36788899999999999888 999999999999999999999633 2232 11222333333
Q ss_pred ----hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHH
Q 015230 246 ----LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 320 (411)
Q Consensus 246 ----~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 320 (411)
+.||||++++ +.||+++++++++.+......+.. +...++..++++.++++.+.+ .+..++++++.+++.+.
T Consensus 224 ~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~ 300 (385)
T TIGR01825 224 VDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLF-STAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAG 300 (385)
T ss_pred CcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccc-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4699999964 458888898888887632221221 223466777888888876654 45778888888888888
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC-------CCcceee--ecC
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------QFEAGFT--SLA 391 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-------~~~~~~~--~~~ 391 (411)
|+++. ++.. ...+.++.+.+. ...+...+++.|.++||.+.+. +.+.+|+ ++.
T Consensus 301 L~~~g--~~~~---~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~ 362 (385)
T TIGR01825 301 LGKLG--YDTG---GSETPITPVVIG-------------DEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAE 362 (385)
T ss_pred HHHcC--CCCC---CCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCC
Confidence 87752 1211 122345555441 1223467889999999998543 2234666 568
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
++++++++++++|++++++
T Consensus 363 ~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 363 HTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-29 Score=239.85 Aligned_cols=321 Identities=18% Similarity=0.194 Sum_probs=220.1
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC---CC----CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG---TS----FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~---~~----~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~ 105 (411)
.|..++||.++ +|+|+ +||++++++.+++++. .. +........++.+.+++.++ .+.+++++||++|+
T Consensus 52 ~g~~~~~~~~~---~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g-~~~~~~~~sG~~An 127 (407)
T PRK07179 52 PGPDAIILQSN---DYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG-FESCLLCQSGWAAN 127 (407)
T ss_pred CCCcEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC-CCcEEEECCHHHHH
Confidence 44556677776 77777 8999999999999863 11 11123467788888888874 45678899999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.+. ..++.+++ +...|..........| ..+..++++|++++++.++.. +++
T Consensus 128 ~~~l~~l~--~~g~~v~~-~~~~h~s~~~~~~~~g-------------------~~~~~~~~~d~~~l~~~l~~~--~~~ 183 (407)
T PRK07179 128 VGLLQTIA--DPNTPVYI-DFFAHMSLWEGVRAAG-------------------AQAHPFRHNDVDHLRRQIERH--GPG 183 (407)
T ss_pred HHHHHHhC--CCCCEEEE-ECCcCHHHHHHHHHCC-------------------CeEEEecCCCHHHHHHHHHhc--CCe
Confidence 99998532 23455555 4443432222111111 123445567999999999742 468
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCCC--cch--hhhhhhccCCcc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVT--PDL--TTLGKIIGGGLP 258 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~~--~d~--~~~sK~~~~G~~ 258 (411)
+|+++++++++|.+.+ +++|.++|++||++||+||+|+ |. ..|.. ....+++. +|+ .|+||++++ |
T Consensus 184 lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g-~~~~~~~~~~vdi~~~S~sK~~g~--~ 256 (407)
T PRK07179 184 IIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAG-LVAELGLTSRVHFITASLAKAFAG--R 256 (407)
T ss_pred EEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCc-hHHhcCCCCCCCEEEeechHhhhc--c
Confidence 8999999999999999 9999999999999999999997 32 23322 23344543 365 468999975 7
Q ss_pred cccccccHHHHHHhcCCC-CcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+|++++++++++.+.... +..+++++ ++..++++.++++.+.. ++.+++++++.+++++.|+++ ++. +.+
T Consensus 257 ~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~--v~~ 328 (407)
T PRK07179 257 AGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL----GYN--IRS 328 (407)
T ss_pred CeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCC--CCC
Confidence 999999988877765322 12222233 34555556667777655 457788999999999999876 221 224
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec----cC---CCcceee--ecCCCHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS---QFEAGFT--SLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~---~~~~~~~--~~~~t~~~i~~~i~~l~~~ 407 (411)
.+.++++.+. .......+.+.|.++||++. |. ..+.+|+ +..+|++|+++++++|+++
T Consensus 329 ~~~i~~l~~~-------------~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~ 395 (407)
T PRK07179 329 ESQIIALETG-------------SERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREA 395 (407)
T ss_pred CCCEEEEEeC-------------CHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4677777662 22344678889999999743 32 1245777 4668999999999999998
Q ss_pred HHh
Q 015230 408 LRQ 410 (411)
Q Consensus 408 ~~~ 410 (411)
+++
T Consensus 396 ~~~ 398 (407)
T PRK07179 396 RDE 398 (407)
T ss_pred HHh
Confidence 775
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=238.77 Aligned_cols=330 Identities=15% Similarity=0.192 Sum_probs=226.7
Q ss_pred EeccCCccccccCC-CcHHHHHHHHHHHHc-CCC------CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHH
Q 015230 39 IDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLR 110 (411)
Q Consensus 39 ~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~ 110 (411)
+||.++ +|+|+ .||++++++.+++++ +.+ +.+....+.++.+.+++.++.. +.++.++|..|+..++.
T Consensus 1 ~~f~s~---dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e-~al~~~sG~~a~~~~i~ 76 (392)
T PLN03227 1 LNFATH---DFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTE-SAILYSDGASTTSSTVA 76 (392)
T ss_pred CCCcCc---CccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCC-cEEEecCcHHHHHHHHH
Confidence 578888 99999 899999999999987 222 2223456788888888888644 55555567777777776
Q ss_pred HHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC----------
Q 015230 111 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---------- 180 (411)
Q Consensus 111 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---------- 180 (411)
. ...+++.|++.+..|.+.... ..+.+ ..+..++++|++++++.++..
T Consensus 77 ~--l~~~GD~Vl~~~~~h~s~~~~-~~l~~-------------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~ 134 (392)
T PLN03227 77 A--FAKRGDLLVVDRGVNEALLVG-VSLSR-------------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRK 134 (392)
T ss_pred H--hCCCCCEEEEeccccHHHHHH-HHHcC-------------------CeEEEeCCCCHHHHHHHHHHhhhhccccccc
Confidence 4 234556676666666543222 11111 235557777887777755432
Q ss_pred -CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-c-c-ccccCccccccCCCc----chhh--hh
Q 015230 181 -KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G-F-RLAYGGAQEYFGVTP----DLTT--LG 250 (411)
Q Consensus 181 -~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g-~-~~g~~~~~~~~~~~~----d~~~--~s 250 (411)
..++++|++|++++++|.+.+ +++|.++|++||+++|+||+|+ | + +.|. +..+++++.| |+++ +|
T Consensus 135 ~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls 209 (392)
T PLN03227 135 PTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE 209 (392)
T ss_pred cCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech
Confidence 125789999999999999999 9999999999999999999996 2 2 3444 5677888888 8765 55
Q ss_pred hhccCCcccccccccHHHHHHhcCCCCcccccCCCCC--HHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 251 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--PLAMTAGIHTLKR-LKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 251 K~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~a~~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
|+++ .+.|++++++++++.+... .+..+++.+ |+.++++.++++. ++.++++++++++.+++++.|++. .
T Consensus 210 k~~g--~~gg~v~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~--~ 282 (392)
T PLN03227 210 NAFG--SVGGMTVGSEEVVDHQRLS---GSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS--S 282 (392)
T ss_pred hhhh--ccCcEEecCHHHHHHHHHh---CcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--C
Confidence 6654 3567778898888776532 233355554 7777777777755 444778899999999999999863 3
Q ss_pred cCCceEEee--------ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------cceee
Q 015230 328 AGHAICGGY--------ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------EAGFT 388 (411)
Q Consensus 328 ~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----------~~~~~ 388 (411)
++...++++ .|+++.+++.+..... ..........+.+.+.++|+++.+.+. ..+|+
T Consensus 283 ~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~ 358 (392)
T PLN03227 283 HPYALKLRNRLVITSDPISPIIYLRLSDQEATR----RTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRV 358 (392)
T ss_pred CccccccccccccCCCCCCCEEEEEeCCHHHhh----hhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEE
Confidence 444444444 3557888874321100 001112346889999999999964321 12343
Q ss_pred --ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 --SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 --~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+..+|++|+++++++|++++++
T Consensus 359 ~~~~~~t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 359 VANASHTREDIDKLLTVLGEAVEA 382 (392)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHH
Confidence 5777999999999999998875
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=219.76 Aligned_cols=352 Identities=15% Similarity=0.125 Sum_probs=256.2
Q ss_pred CCeEEEeecCcEEEecCC--CEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCCCCCCH-HHHHHHHHHHhhCC--
Q 015230 18 QPIVFDSVKGSHMWDIDG--NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSFGAPCL-LENVLAEMVISAVP-- 90 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g--~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~~~~~~-~~~~l~~~l~~~~~-- 90 (411)
+-++-..++.+..||..+ ..++- .|++.+.+ .+|++++|+.+.++++ .+|.+.++ +..++.+|..+.++
T Consensus 5 ~~~~~r~~t~s~KWd~~~g~~DvlP----mWVADMDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~ 80 (388)
T COG1168 5 DTVIERLGTNSLKWDAHPGNEDVLP----MWVADMDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWE 80 (388)
T ss_pred hhhhhhcCCCceeccccCCCCCcce----eeeecccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 344456677788888665 33332 44566667 8999999999999997 45655444 78999999999997
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhccC-CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
.++.++|+++...++..+++ .+++ ++.|++.+|.|+ .+..+....|+.+...+.....+ -+.+
T Consensus 81 i~~e~i~~~p~VVpgi~~~I~---~~T~~gd~Vvi~tPvY~-PF~~~i~~n~R~~i~~pL~~~~~--------~y~i--- 145 (388)
T COG1168 81 IKPEWIVFVPGVVPGISLAIR---ALTKPGDGVVIQTPVYP-PFYNAIKLNGRKVIENPLVEDDG--------RYEI--- 145 (388)
T ss_pred CCcceEEEcCcchHhHHHHHH---HhCcCCCeeEecCCCch-HHHHHHhhcCcEEEeccccccCC--------cEEe---
Confidence 58899999999999999998 5554 677888888887 45555556666555544321111 1112
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc-cCccccccCCCcc-
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQEYFGVTPD- 245 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g-~~~~~~~~~~~~d- 245 (411)
|.++||+.+... ..+..++|+|.|+.|.+++. |.|.+|.++|.|||++||+||+|+++ ..| ....+. .+.++
T Consensus 146 D~~~LE~~~~~~-~vkl~iLCnPHNP~Grvwt~--eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~ls~~~ 220 (388)
T COG1168 146 DFDALEKAFVDE-RVKLFILCNPHNPTGRVWTK--EELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--SLSERF 220 (388)
T ss_pred cHHHHHHHHhcC-CccEEEEeCCCCCCCccccH--HHHHHHHHHHHHcCCEEEeecccccccccCCCccchh--hcChhh
Confidence 899999999842 23567888888877766654 44999999999999999999999998 556 333322 22222
Q ss_pred ------hhhhhhhcc-CCcccccc-cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 015230 246 ------LTTLGKIIG-GGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITG 315 (411)
Q Consensus 246 ------~~~~sK~~~-~G~~~g~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~ 315 (411)
+.+-||+|+ +|+..+++ +.++++.+++.+ ..........|.++..|..++++.-+. +++.+.++.+.+
T Consensus 221 a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~--~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~ 298 (388)
T COG1168 221 ADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLK--RLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRD 298 (388)
T ss_pred hcceEEEeeccccccchhhhheeEEecCHHHHHHHHH--HHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 335689999 89999988 456666444432 111234667788999999999887665 888899999999
Q ss_pred HHHHHHHHHHHhcCCceEEeee-cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccC------CCccee
Q 015230 316 ELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS------QFEAGF 387 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~------~~~~~~ 387 (411)
++.+.+++. .|.+....+. ..++|+++......+ .++.+.+.++ +|.+.+| +.+.+|
T Consensus 299 ~~~~~l~~~---~P~v~v~~p~gTYL~WLD~r~l~l~d------------~~l~~~ll~~akVal~~G~~FG~~g~gf~R 363 (388)
T COG1168 299 YVADFLNKH---LPGVKVTEPQGTYLAWLDCRELGLDD------------SELAEFLLEEAKVALSPGSTFGEEGSGFVR 363 (388)
T ss_pred HHHHHHHhh---CCCcEEecCCCceeeeeeccccCCCh------------HHHHHHHHHhhcEeccCCCccCcCCCceEE
Confidence 999999876 3544444444 457899997654432 5777777766 7877776 334589
Q ss_pred eecCCCHHHHHHHHHHHHHHHHh
Q 015230 388 TSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 388 ~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++.++++-+++++++|..+++.
T Consensus 364 lN~acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 364 LNFACPRAILEEALERLKRALKK 386 (388)
T ss_pred EecCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999875
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=236.08 Aligned_cols=328 Identities=18% Similarity=0.211 Sum_probs=228.4
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTS-------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~ 105 (411)
+|+++++|.++ +++|+ +||++++++.++++.... +....+...++.+.+++.++.. +.+++++|++|+
T Consensus 44 ~~~~~~~~~sn---~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~-~~i~~~sG~~a~ 119 (410)
T PRK13392 44 GPRRVTIWCSN---DYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKE-SALLFTSGYVSN 119 (410)
T ss_pred CCceEEEEECC---CccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCC-CEEEECcHHHHH
Confidence 46889999998 99999 899999999999987421 1123446789999999998754 455555689999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC-CCcE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~~ 184 (411)
..++.......+ +++|+.+..+|+.........|. ++..++++|.+++++.+++. .+++
T Consensus 120 ~~~i~~l~~~~~-g~~vi~~~~~h~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~t 179 (410)
T PRK13392 120 DAALSTLGKLLP-GCVILSDALNHASMIEGIRRSGA-------------------EKQVFRHNDLADLEEQLASVDPDRP 179 (410)
T ss_pred HHHHHHHhcCCC-CCEEEEehhhhHHHHHHHHHcCC-------------------eEEEEeCCCHHHHHHHHHhccCCCC
Confidence 999974322223 34556666677654443333333 23334556888888887653 2467
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCC--Ccchh--hhhhhccCCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~--~~d~~--~~sK~~~~G~ 257 (411)
++|++++++|++|.+.+ +++|.++|++|++++|+||+|+ |+ ..|... ....+. .+|++ ||||+++.
T Consensus 180 ~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~-- 252 (410)
T PRK13392 180 KLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC-- 252 (410)
T ss_pred EEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc--
Confidence 89999999999999988 9999999999999999999997 55 233222 223333 34654 89999984
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+.||+++++++++.++.....+.. +...++++++++.++++.++. ...+++++++.+++++.|+++. +... .+
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~---~~ 326 (410)
T PRK13392 253 LGGYIAASADLIDFVRSFAPGFIF-TTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANG--IPVM---PS 326 (410)
T ss_pred ccchhhcCHHHHHHHHHhCcchhc-cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--CCCC---CC
Confidence 237888899998877643333332 445677888888899987765 4455667888888888887752 1211 23
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC-------cceee--ecCCCHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~-------~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
.+.++.+.+. ......++.+.|+ ++||++.+..+ ..+|+ +..+|++|+++++++|.+
T Consensus 327 ~~~~~~i~~~-------------~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~ 393 (410)
T PRK13392 327 PSHIVPVMVG-------------DPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVA 393 (410)
T ss_pred CCCEEEEEeC-------------CHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 4555555442 1223467888886 67999987532 24676 457899999999999999
Q ss_pred HHHhC
Q 015230 407 VLRQI 411 (411)
Q Consensus 407 ~~~~~ 411 (411)
+++++
T Consensus 394 ~~~~~ 398 (410)
T PRK13392 394 IWDRL 398 (410)
T ss_pred HHHHc
Confidence 88753
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=228.37 Aligned_cols=332 Identities=19% Similarity=0.236 Sum_probs=227.7
Q ss_pred EEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCC------CCCCHHHHHHHHHHHhhCCCCC
Q 015230 22 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIE 93 (411)
Q Consensus 22 ~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~------~~~~~~~~~l~~~l~~~~~~~~ 93 (411)
..++.|.++. .+|++++||.++ +++|+ .+|++++++.++++.. ..+ .+..+...++.+.+++.++..+
T Consensus 3 ~~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~ 78 (360)
T TIGR00858 3 LDRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEA 78 (360)
T ss_pred cccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCC
Confidence 3567889997 899999999998 78997 8899999999998762 111 1224567788888888876555
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
.++++ +|++++..+++.+ ..+++.|++.++.|. .........|.+ +..++..|++++
T Consensus 79 ~i~~~-~G~~~~~~~l~~~--~~~gd~v~~~~~~~~-~~~~~~~~~g~~-------------------~~~~~~~d~~~l 135 (360)
T TIGR00858 79 ALLFS-SGYLANVGVISAL--VGKGDLILSDALNHA-SLIDGCRLSGAR-------------------VRRYRHNDVEHL 135 (360)
T ss_pred EEEEC-chHHHHHHHHHHh--CCCCCEEEEEccccH-HHHHHHHhcCCc-------------------eEEecCCCHHHH
Confidence 55555 5678887776642 344556666555544 333333333332 222333489999
Q ss_pred HHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-c-CccccccCCCcc-----
Q 015230 174 ENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-Y-GGAQEYFGVTPD----- 245 (411)
Q Consensus 174 ~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~-~~~~~~~~~~~d----- 245 (411)
++.++... .++++++++++++++|...+ +++|.++|++||+++|+||+|+.+..+ . ......+++.++
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 211 (360)
T TIGR00858 136 ERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQ 211 (360)
T ss_pred HHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEE
Confidence 99987542 35688888888888898888 999999999999999999999732111 1 112223334333
Q ss_pred hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 246 ~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+.|+||++++ +.||+++++++++.+......+ ..+.+.++.+++++.++++.+.. ++++++++++.+++.+.|+++
T Consensus 212 i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 288 (360)
T TIGR00858 212 VGTLSKALGS--YGAYVAGSQALIDYLINRARTL-IFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL 288 (360)
T ss_pred EEechhhhhc--cCcEEEcCHHHHHHHHHhCccc-eecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 5699999985 3489988988888775322211 11334566777777788876654 467788999999999998875
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Ccceeee--cCCCHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTS--LAHSSD 395 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~--~~~t~~ 395 (411)
+... ....|.++|+.+. ...+..++.+.|.++||++.++. .+.+|++ ..++++
T Consensus 289 ----~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~ 350 (360)
T TIGR00858 289 ----GFTL-MPSCTPIVPVIIG-------------DNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG 350 (360)
T ss_pred ----CCcc-CCCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence 3221 1345778888773 22334689999999999997532 2357775 456999
Q ss_pred HHHHHHHHHH
Q 015230 396 DIQHTITAAE 405 (411)
Q Consensus 396 ~i~~~i~~l~ 405 (411)
++++++++|+
T Consensus 351 ~i~~~l~~l~ 360 (360)
T TIGR00858 351 DIDRLAEALK 360 (360)
T ss_pred HHHHHHHhhC
Confidence 9999999873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=231.42 Aligned_cols=333 Identities=14% Similarity=0.085 Sum_probs=223.1
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 108 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~a 108 (411)
.+++|..+. .+++ .++.+.+++.+.++.. ..| .+..++++++++++.+.++ .++ +|++|+|+++|+..+
T Consensus 21 ~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 97 (378)
T PRK07682 21 GVISLGVGE--PDFV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA 97 (378)
T ss_pred CeEEeCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 468888774 2333 5667888888887652 223 2446788999999988754 344 899999999999998
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE-
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI- 187 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v- 187 (411)
++.. ..+++.|++.+++|+... ......|..+..++......+. -|++++++.+.. +++++
T Consensus 98 ~~~l--~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~---~~~~v~ 159 (378)
T PRK07682 98 MRAI--INPGDEVLIVEPSFVSYA-PLVTLAGGVPVPVATTLENEFK------------VQPAQIEAAITA---KTKAIL 159 (378)
T ss_pred HHHh--CCCCCEEEEeCCCchhhH-HHHHHcCCEEEEeecCCccCCC------------CCHHHHHhhcCc---ccEEEE
Confidence 8743 346688999999998543 3333344433333221111110 178999887763 45555
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-ccccC---CCcchhhhhhhcc-CCccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG---VTPDLTTLGKIIG-GGLPVGA 261 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~~~~---~~~d~~~~sK~~~-~G~~~g~ 261 (411)
+++| +|++|... +.+.+++|.++|++|++++|+||+|.++ ..+.... ....+ ....+.||||.++ +|+|+||
T Consensus 160 ~~~p-~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ 237 (378)
T PRK07682 160 LCSP-NNPTGAVL-NKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGF 237 (378)
T ss_pred EECC-CCCcCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhh
Confidence 4555 55566544 4555999999999999999999999987 4332111 11111 2223569999999 7999999
Q ss_pred ccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 015230 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 339 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 339 (411)
+++++++++.+... ...+.++.+.+++.++.++++..+. +++++.++++.+++.+.|+++ +........|+
T Consensus 238 ~~~~~~~i~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~p~g~~ 310 (378)
T PRK07682 238 IAAPVYFSEAMLKI---HQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI----GLTCHVPGGAF 310 (378)
T ss_pred hhcCHHHHHHHHHH---HHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC----CCccCCCCeeE
Confidence 99999999887632 1223456678888888877753211 344566677777777777664 33222334567
Q ss_pred eEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 340 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++|+.+.... .+..++.+.+. ++||.+.|+. .+.+|+++..+++++++++++|+++++++
T Consensus 311 ~~~~~~~~~~------------~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 311 YAFPSISSTG------------LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred EEEEeccCCC------------CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 7777663211 11256777765 6799999873 34589998889999999999999998763
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=232.80 Aligned_cols=331 Identities=13% Similarity=0.098 Sum_probs=222.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG----APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~----~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~a~ 105 (411)
.+..++||..+. .+++ .++.+++++.+.+.....++ +..++++.+++++.+..+ .+ ++|++|+|+++++
T Consensus 30 ~~~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al 106 (399)
T PRK07681 30 AGHKMIDLSIGN--PDMP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGL 106 (399)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHH
Confidence 466789998883 2222 67788999988876532232 346778899999987654 55 7999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..++++. +.+++.|++.+++|+... ......|..+..++.....++.. |++++++.+. ++++
T Consensus 107 ~~~~~~~--~~~Gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~~~~~~~~~------------d~~~l~~~~~---~~~k 168 (399)
T PRK07681 107 VHLPMVY--ANPGDIILVPDPGYTAYE-TGIQMAGATSYYMPLKKENDFLP------------DLELIPEEIA---DKAK 168 (399)
T ss_pred HHHHHHh--CCCCCEEEECCCCccchH-HHHHhcCCEEEEEecCCCCCCcC------------CHHHHHHhcc---ccce
Confidence 9988742 346678999999998643 33445555555444322222211 7888887775 2456
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--cccccc---CCCcchhhhhhhcc-CCcc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYF---GVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~~~~---~~~~d~~~~sK~~~-~G~~ 258 (411)
+++++..+|++|.+.+ .+.+++|.++|++|+++||+||+|.++ ..+.. ...... +....+.||||.++ +|+|
T Consensus 169 ~v~l~~P~NPTG~~~s-~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 247 (399)
T PRK07681 169 MMILNFPGNPVPAMAH-EDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSR 247 (399)
T ss_pred EEEEeCCCCCcCcCCC-HHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccce
Confidence 6666533555665554 444999999999999999999999977 33321 111111 12233569999998 8999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+||+++++++++.+.... ....++.+.+++.++.++++.... ++.++.++++.+++.+.|++. ++......
T Consensus 248 iG~~i~~~~l~~~~~~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~p~ 320 (399)
T PRK07681 248 IGYMIGNEEIVRALTQFK---SNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF----GWNVDKPA 320 (399)
T ss_pred eEEEecCHHHHHHHHHHH---hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccCCC
Confidence 999999999988886322 223556677788877777653211 333445555556666666543 43222234
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
.|+++|+++.+. .+..++.+.+.+ +||.+.|+. .+.+|+++..+++++++++++|++
T Consensus 321 ~g~f~~~~l~~~-------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 321 GSMFVWAEIPKG-------------WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred eeeEEEEECCCC-------------CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 588999988421 122567777776 799999873 235899888889999999999987
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=230.18 Aligned_cols=335 Identities=17% Similarity=0.132 Sum_probs=228.0
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~ 106 (411)
+..++||..+ .|.-..++.+++++.+.++.. ..|+ +..++++.+++++.+..+ .++ +|++|+|+++|+.
T Consensus 53 ~~~~i~l~~G---~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~ 129 (413)
T PLN00175 53 KHGAINLGQG---FPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIA 129 (413)
T ss_pred cCCeEecCCC---CCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHH
Confidence 3467898888 332225788899998888763 2332 346788899999987764 355 6999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++... +.+++.|++.+++|... .......|..+..++..... +. -|++++++.+.. ++++
T Consensus 130 ~~~~~l--~~~gd~Vlv~~P~y~~~-~~~~~~~g~~~~~v~~~~~~-~~------------~~~~~l~~~~~~---~~k~ 190 (413)
T PLN00175 130 ATILGL--INPGDEVILFAPFYDSY-EATLSMAGAKIKTVTLRPPD-FA------------VPEDELKAAFTS---KTRA 190 (413)
T ss_pred HHHHHh--CCCCCEEEEeCCCchhH-HHHHHHcCCEEEEEECCccc-CC------------CCHHHHHHhcCc---CceE
Confidence 888742 45678899999888754 33444455544443332111 10 178889888863 4666
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccccC---CCcchhhhhhhcc-CCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFG---VTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~~~---~~~d~~~~sK~~~-~G~~~g 260 (411)
+++++.+|++|...+ .+.+++|.++|++|+++||+||+|.++ ..+... .....+ ....+.||||.++ +|+|+|
T Consensus 191 i~i~~p~NPtG~~~s-~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG 269 (413)
T PLN00175 191 ILINTPHNPTGKMFT-REELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIG 269 (413)
T ss_pred EEecCCCCCCCcCCC-HHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchhee
Confidence 666666666776554 556999999999999999999999877 433211 111111 2223459999999 899999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 338 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 338 (411)
|+++++++++.+... ....+++.+.+++.++.++++..+. ++.++.++++.+.+.+.|++. ++.......|
T Consensus 270 ~~v~~~~l~~~l~~~---~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~p~g~ 342 (413)
T PLN00175 270 WAIAPPHLTWGVRQA---HSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV----GFKVYPSSGT 342 (413)
T ss_pred eeEeCHHHHHHHHHH---HhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCee
Confidence 999999998887632 1223567788888888877753211 445566677777777777654 4333334457
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC---------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~---------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
+++|+++..... ....++++.|. ++||.+.|+. .+.+|++++.+++++++++++|.+++
T Consensus 343 ~f~~~~~~~~~~-----------~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 343 YFVMVDHTPFGF-----------ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKL 411 (413)
T ss_pred EEEEEeccccCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 788887632111 01256777776 5699999863 23589988889999999999999987
Q ss_pred Hh
Q 015230 409 RQ 410 (411)
Q Consensus 409 ~~ 410 (411)
++
T Consensus 412 ~~ 413 (413)
T PLN00175 412 KR 413 (413)
T ss_pred hC
Confidence 63
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=225.54 Aligned_cols=334 Identities=16% Similarity=0.155 Sum_probs=220.0
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP-CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~-~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~ 111 (411)
++..++++..+. +++ ..++.+.+++.+++.......|. ..-..++.+++++.++ .++++++|+|+++++..+++.
T Consensus 26 ~~~~~i~l~~~~--~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~ 102 (380)
T PRK06225 26 KDKEMIWMGQNT--NHL-GPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRA 102 (380)
T ss_pred hcCCeEEccCCC--CCC-CCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHH
Confidence 345688888763 333 37889999999998864222232 2234667777777777 678999999999999999975
Q ss_pred HHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC-CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE-E
Q 015230 112 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-L 189 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi-~ 189 (411)
. ..+++.|++.+++|+. ........|..+..++... ..+.. -|++++++.++ +++++++ +
T Consensus 103 ~--~~~gd~vl~~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~------------~d~~~l~~~~~---~~~~~v~l~ 164 (380)
T PRK06225 103 F--LSPGDNAVTPDPGYLI-IDNFASRFGAEVIEVPIYSEECNYK------------LTPELVKENMD---ENTRLIYLI 164 (380)
T ss_pred h--cCCCCEEEEcCCCCcc-hHHHHHHhCceEEeeccccccCCcc------------CCHHHHHhhcC---CCceEEEEe
Confidence 3 3345778888988874 3334444555444433211 11111 17888888776 2455554 5
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccc-cCCCcchhhhhhhcc-CCcccccccccHH
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~-~~~~~d~~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
+| +|++|...+ .+.+++|.++|++||+++|+||+|.+|..+....... .....++.||||.++ +|+|+||++++++
T Consensus 165 ~p-~NptG~~~~-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~ 242 (380)
T PRK06225 165 DP-LNPLGSSYT-EEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPD 242 (380)
T ss_pred CC-CCCCCcCCC-HHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHH
Confidence 55 445565543 4459999999999999999999998772221111111 122344679999998 7999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH----HHHHHHHHHHHHHHHhcCC-ceEEeeecceEE
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN----KITGELTQGIIDAGKKAGH-AICGGYISGMFG 342 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~ 342 (411)
+++.+... ...+++.+.++++++.++++.. ++..++++ ++.+.+.+.|+++ .+. .......|.++|
T Consensus 243 l~~~~~~~----~~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~ 313 (380)
T PRK06225 243 LIEVVKSI----VINDLGTNVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAVDEI---EGVFLPVYPSHGNMMV 313 (380)
T ss_pred HHHHHHHH----HhcccCCCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHhC---cCCccccCCCCCeEEE
Confidence 98887632 1235667888888877776532 23333333 3444444444442 121 112234577888
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------CcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+++.... .+..++.+.|.++||.+.++. ...+|+++..+++++++++++|+++++++
T Consensus 314 ~~~~~~~------------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~ 377 (380)
T PRK06225 314 IDISEAG------------IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETL 377 (380)
T ss_pred EEccccc------------CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 8874321 123678888999999998862 23589998889999999999999988753
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-28 Score=228.43 Aligned_cols=335 Identities=13% Similarity=0.115 Sum_probs=215.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.|+.++||..+. .+++ .++.+.+++.+.+.... .| .+..++++++++++.+.++ .++ +|++|+|++++
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLGS--SDLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 577889998884 2333 57889999988876422 23 2345788899999987664 466 69999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++. .+.+++.|++.+|+|.... ......|..+..++.....++. .|++++++.+. .++
T Consensus 105 l~~~~~~--l~~~gd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~~ 166 (388)
T PRK07366 105 TAHLPLA--VLNPGDFALLLDPGYPSHA-GGVYLAGGQIYPMPLRAENDFL------------PVFADIPTEVL---AQA 166 (388)
T ss_pred HHHHHHH--hCCCCCEEEEcCCCCcchH-HHHHhcCCEEEEEECCCccCCC------------CCHHHHHHhhc---ccc
Confidence 9998874 2346788999999998654 3334445544444332111111 16777766654 245
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC---ccccc--c-CCCcchhhhhhhcc-CC
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQEY--F-GVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~---~~~~~--~-~~~~d~~~~sK~~~-~G 256 (411)
+++++++.+|++|...+ .+.+++|.++|++|+++||+||+|..| ..+.. ..... . .....+.||||.++ +|
T Consensus 167 k~i~l~~p~NPTG~~~s-~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 167 RLMVLSYPHNPTTAIAP-LSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred eEEEEeCCCCCCCccCC-HHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 56666555666666554 455999999999999999999999987 43321 11111 1 11123459999997 89
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+|+||+++++++++.+....... ..+..+..+.++.+++..... +++++.++++.+++.+.|+++ ++....
T Consensus 246 lRiG~~v~~~~li~~l~~~~~~~---~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~----~~~~~~ 318 (388)
T PRK07366 246 FRIGFAIGNAQLIQALRQVKAVV---DFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI----GWPVPL 318 (388)
T ss_pred hhheehcCCHHHHHHHHHHHhhc---ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccC
Confidence 99999999999988876422211 222222223333444421111 344555666666666666543 433233
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
...|+++|+++.... ..+..++.+.+ .++||.+.|+. .+.+|++++.+++++++++++|.+.
T Consensus 319 p~~g~f~~~~~~~~~-----------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 319 PEATMYVWAKLPEPW-----------QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAF 387 (388)
T ss_pred CCeeEEEEEECCccc-----------CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 456889999884310 00124566665 56799999972 2458998888999999999999875
Q ss_pred H
Q 015230 408 L 408 (411)
Q Consensus 408 ~ 408 (411)
+
T Consensus 388 l 388 (388)
T PRK07366 388 L 388 (388)
T ss_pred C
Confidence 3
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=226.84 Aligned_cols=338 Identities=9% Similarity=0.102 Sum_probs=219.0
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 106 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~a~~ 106 (411)
...+||..+.. +++ ..++.+.+++.+.+... ..|+ +..++++.+++++.+.++ .+ ++|++|+|+++++.
T Consensus 39 ~~~i~l~~g~~-~~~-~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDV-DAH-EPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCC-CCC-CCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 45678886632 112 26678899998888753 2232 346788999999998775 45 89999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.. ..+++.|++.+++|++.. ......|..+..++......- .-.. -|++++++.++. ++++
T Consensus 117 ~~~~~l--~~~Gd~Vlv~~P~y~~~~-~~~~~~g~~v~~v~~~~~~~~------~~~~---~d~~~l~~~~~~---~~k~ 181 (405)
T PRK06207 117 LAVAAT--VARGDKVAIVQPDYFANR-KLVEFFEGEMVPVQLDYLSAD------KRAG---LDLDQLEEAFKA---GVRV 181 (405)
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHH-HHHHHcCCEEEEEeccccCcc------cCCC---cCHHHHHHhhhh---cCeE
Confidence 988743 356788999999998644 333444554443332110000 0000 188999988863 3444
Q ss_pred -EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccccCC----Ccchhhhhhhcc-CCcc
Q 015230 187 -IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGV----TPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 187 -vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~~~~----~~d~~~~sK~~~-~G~~ 258 (411)
++++| +|++|.+.+ .+.+++|.++|++|+++||+||+|..+ ..+... ....+.. ..-+.||||.++ +|+|
T Consensus 182 v~l~~P-~NPTG~~~s-~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlR 259 (405)
T PRK06207 182 FLFSNP-NNPAGVVYS-AEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR 259 (405)
T ss_pred EEECCC-CCCCCcCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccc
Confidence 45555 555665554 344999999999999999999999987 444211 1111111 223558999999 8999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+||+++++++++.+..... ....+.+.+++.++.++++.-. -++.+++.+++.+.+.+.|+++ .++......
T Consensus 260 iG~ii~~~~l~~~~~~~~~---~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~p~ 333 (405)
T PRK06207 260 LGVAFGSPAIIDRMEKLQA---IVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGV---EGVFVRAPQ 333 (405)
T ss_pred eEEEEcCHHHHHHHHHHHh---HhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC---CCceecCCC
Confidence 9999999999888863221 1234455667777766664210 0223334444444444444432 122222344
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.|+++|+++.... .+...+.+.|. ++||.+.|+. .+.+|+++..+.+++++++++|.++++
T Consensus 334 gg~fl~~~l~~~~------------~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~ 401 (405)
T PRK06207 334 AGSYLFPRLPRLA------------VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIE 401 (405)
T ss_pred eeEEEEEeCcccC------------CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 5889999884311 11356888886 6799999974 245899988899999999999999886
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 402 ~ 402 (405)
T PRK06207 402 R 402 (405)
T ss_pred H
Confidence 5
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=225.65 Aligned_cols=320 Identities=14% Similarity=0.153 Sum_probs=214.0
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC--CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG--APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~--~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~ 107 (411)
..+|+..|. ++++ .+|.+++++.+.+... ..|. +..++++.+++++.+.++ .+++|++|+|+++++..
T Consensus 27 ~~i~l~~~~--~~~~-~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~ 103 (368)
T PRK03317 27 VPVRLNTNE--NPYP-PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ 103 (368)
T ss_pred ceeEecCCC--CCCC-CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence 468888773 3443 7888999998887541 1222 224577788888877654 57899999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.. ..+++.|++..++|+.... .....|..+..++.....++ |++++++++++. +++++
T Consensus 104 ~~~~~--~~~gd~v~v~~P~y~~~~~-~~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~~~~~--~~~~i 164 (368)
T PRK03317 104 LLQAF--GGPGRTALGFVPSYSMHPI-IARGTHTEWVEGPRAADFTL--------------DVDAAVAAIAEH--RPDVV 164 (368)
T ss_pred HHHHh--cCCCCEEEEeCCChHHHHH-HHHhcCCeeEEcccCCCCCC--------------CHHHHHHHHhcc--CCCEE
Confidence 98843 3456789999999986433 33333332222211111111 889999888743 34455
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh---hhhhhcc-CCcccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAY 262 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~---~~sK~~~-~G~~~g~~ 262 (411)
+++..+|++|.+.+ .+++.++|+.++++||+||+|++| +.+........+..++++ ||||+++ +|+|+||+
T Consensus 165 ~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~ 240 (368)
T PRK03317 165 FLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL 240 (368)
T ss_pred EEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhh
Confidence 55555677888887 778888888889999999999988 555333333333345544 9999998 79999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceE
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 341 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 341 (411)
++++++++.+.... .++..++++++++.++++.... .+.+++++++.+++.+.|++ .++.. ..+.|.++
T Consensus 241 ~~~~~~~~~l~~~~-----~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~-~~~~~~~~ 310 (368)
T PRK03317 241 AAAPAVVDALRLVR-----LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRE----LGLRV-APSDANFV 310 (368)
T ss_pred hCCHHHHHHHHhcC-----CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH----CCCEe-CCCCCcEE
Confidence 99999999887422 3567788999988888764322 22233444444455554443 24322 22334443
Q ss_pred EE-EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 342 GF-FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 342 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
++ .+. +...+.+.|.++||++.+.+. +.+|+++. +.+++++++++|+++++
T Consensus 311 ~~~~~~----------------~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~-~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 311 LFGRFA----------------DRHAVWQGLLDRGVLIRDVGIPGWLRVTIG-TPEENDAFLAALAEVLA 363 (368)
T ss_pred EEeccC----------------CHHHHHHHHHHCCEEEEeCCCCCeEEEecC-CHHHHHHHHHHHHHHHH
Confidence 33 321 126788999999999988653 56888865 67889999999998865
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=226.03 Aligned_cols=332 Identities=14% Similarity=0.102 Sum_probs=217.5
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.+..++||..+ ++....+|.+.+++.+.+.... .| .+..++++++++++.+.++ .++ +|++|+|++++
T Consensus 30 ~~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~ 106 (389)
T PRK08068 30 EGHDVINLGQG---NPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAG 106 (389)
T ss_pred cCCCeEEecCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 45668999888 5544467889999988877532 23 2346788899998876654 456 79999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..++.. ...+++.|++.+++|..... .....|..+..++.....++.. |++++++.+.. ++
T Consensus 107 l~~~~~~--~~~~gd~vlv~~P~y~~~~~-~~~~~g~~~~~i~~~~~~~~~~------------d~~~l~~~~~~---~~ 168 (389)
T PRK08068 107 LVELPQC--LMNPGDTILVPDPGYPDYLS-GVALARAQFETMPLIAENNFLP------------DYTKIPEEVAE---KA 168 (389)
T ss_pred HHHHHHH--hCCCCCEEEEcCCCCcchHH-HHHhcCCEEEEeecccccCCCC------------CHHHHHHhccc---cc
Confidence 9987763 23466789999999975433 3444555444444322222211 78888877752 34
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc-cC-ccccccC---CCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YG-GAQEYFG---VTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g-~~-~~~~~~~---~~~d~~~~sK~~~-~G~ 257 (411)
++++++..+|++|.+.+ .+.+++|.++|++|++++|+||+|..+ ..+ .. ......+ ....+.||||.|+ +|+
T Consensus 169 ~~v~l~~P~NPTG~~~s-~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~Gl 247 (389)
T PRK08068 169 KLMYLNYPNNPTGAVAT-KAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGW 247 (389)
T ss_pred eEEEEECCCCCCCCcCC-HHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccc
Confidence 55554433455665544 444999999999999999999999876 333 11 1111111 2233569999997 899
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+......+ ..+.++..+.++.+++..... +++++.++++.+++.+.|+++ ++.....
T Consensus 248 RiG~~~~~~~l~~~l~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----g~~~~~~ 320 (389)
T PRK08068 248 RVAFAVGNESVIEAINLLQDHL---FVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI----GWEVDAP 320 (389)
T ss_pred eeEeEecCHHHHHHHHHHHhhc---cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccCC
Confidence 9999999999988886422221 223334445555555431111 445666677777777776654 4322233
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
..|+++|+.+.+. .+..++.+.|.+ +||.+.++. .+.+|+++..+++.+.+++++|.++
T Consensus 321 ~g~~~~~v~~~~~-------------~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 321 KGSFFAWMPVPKG-------------YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred CeeEEEEEECCCC-------------CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 4467789988431 123678888886 599998863 3468998888888999999998764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=216.88 Aligned_cols=332 Identities=17% Similarity=0.145 Sum_probs=218.7
Q ss_pred CcHHHHHHHHHHHHcCCC-----CCCCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEE
Q 015230 53 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 123 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~ 123 (411)
.+.-+.+++.++++.... ..+.++++..|++.+++.++ ..++|++|+|+.+++..++.. .+..++.||+
T Consensus 45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~--l~~~GDeVii 122 (420)
T KOG0257|consen 45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLG--LLNPGDEVIV 122 (420)
T ss_pred CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHH--HcCCCCEEEE
Confidence 445577777777776321 22458889999999999665 467899999999999988874 4678899999
Q ss_pred EeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCH
Q 015230 124 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 203 (411)
Q Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~ 203 (411)
++|.|.+......++++.++..-.. ...+-.. ...+. .|.+.++..+. +++++|+++..+|++|.+.+ +
T Consensus 123 ~eP~fd~Y~~~~~maG~tpv~v~~~-~~~g~~~---s~~~~---~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfs-R 191 (420)
T KOG0257|consen 123 FEPFFDCYIPQVVMAGGTPVFVPLK-PKEGNVS---SSDWT---LDPEELESKIT---EKTKAIILNTPHNPTGKVFS-R 191 (420)
T ss_pred ecCcchhhhhHHhhcCCcceeeccc-ccccccc---Ccccc---CChHHHHhhcc---CCccEEEEeCCCCCcCcccC-H
Confidence 9999998887777777765444222 1111100 01111 28999999988 46777777776667776655 5
Q ss_pred HHHHHHHHHHHHhCCEEEEecccccc-cccc---Ccccc--ccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCC
Q 015230 204 DFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQE--YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 276 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~~--~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~ 276 (411)
++|++|+++|++||+++|+||+|.-+ ..+. .++.. .+.+...+.|+||+|+ .|||+||+++++.++.......
T Consensus 192 eeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh 271 (420)
T KOG0257|consen 192 EELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVH 271 (420)
T ss_pred HHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHh
Confidence 55999999999999999999999755 4442 22221 2233455679999999 6999999999888887766433
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHH---hc-------CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 277 PMYQAGTLSGNPLAMTAGIHTLKRL---KE-------PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 277 ~~~~~~t~~~~~~~~a~~~~~l~~~---~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
... .++.+...+.|..+++..- .+ .++.+.++++.+.+.+.|.++ +........+.++|.++.
T Consensus 272 ~~~---~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l----g~~v~~p~gayyl~adfs 344 (420)
T KOG0257|consen 272 QNF---VFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL----GLKVTGPEGAYYLWADFS 344 (420)
T ss_pred hcc---ccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCceEEEEecc
Confidence 222 2333333333333333211 11 336677888888888888887 444344556889999987
Q ss_pred cCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCCc-----------ceeeecCCCHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFE-----------AGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~-----------~~~~~~~~t~~~i~~~i~~l~ 405 (411)
....-++......+..+. ++.+.+ .+.|+.+-|.... .+|+.++-+++.+++++++|+
T Consensus 345 ~~~~~~~~~~~~~~~~d~-~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 345 LAKSWPFFEEILEKPDDF-KFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLK 414 (420)
T ss_pred ccccCCcchhhccCCCce-eeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 221111111111122233 344444 5569988886421 245677888999999999998
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=223.41 Aligned_cols=326 Identities=19% Similarity=0.218 Sum_probs=222.1
Q ss_pred CCCEEEeccCCccccccCCC--cHHHHHHHHHHHHcC-CCC------CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~--~~~v~~a~~~~l~~~-~~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a 104 (411)
++++.+||.|+ +++|+. ++.+.+++.+++++. ... .+.....+++.+.+++.++..+.++++ +|..+
T Consensus 98 ~~~~~~n~~s~---~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~-~G~~a 173 (489)
T PLN02483 98 KTRRCLNLGSY---NYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFG-MGYAT 173 (489)
T ss_pred CCceEEEeecC---CccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEEC-CHHHH
Confidence 56889999999 999993 677888888888773 211 234777888999999888755566665 57777
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC----
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---- 180 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---- 180 (411)
+..++.. ...+++.|++.++.|++.. ......| ..+..++++|++++++.+++.
T Consensus 174 n~~~i~a--l~~~Gd~Vi~d~~~h~s~~-~~~~~~G-------------------a~v~~~~~~d~~~le~~l~~~i~~~ 231 (489)
T PLN02483 174 NSTIIPA--LIGKGGLIISDSLNHNSIV-NGARGSG-------------------ATIRVFQHNTPSHLEEVLREQIAEG 231 (489)
T ss_pred HHHHHHH--hCCCCCEEEEcchhhHHHH-HHHHHcC-------------------CeEEEEeCCCHHHHHHHHHhhhhcc
Confidence 7776663 2345566666666665532 2222222 346667778888888877631
Q ss_pred ------CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCCCc---ch--
Q 015230 181 ------KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTP---DL-- 246 (411)
Q Consensus 181 ------~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~~~---d~-- 246 (411)
+.+..+|+++++.++.|.+.+ +++|.++|++||++||+||+|+ |. .+|. ...+++++.| |+
T Consensus 232 ~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~-g~~~~~~v~~~~~dI~~ 306 (489)
T PLN02483 232 QPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGR-GVCELLGVDPADVDIMM 306 (489)
T ss_pred ccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCC-chHHhcCCCcccCcEEE
Confidence 122458889999999999998 9999999999999999999996 32 2332 2334444432 44
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQ 319 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-------~~~~~~~~~~~~~~~~ 319 (411)
.||||++++ +.||+++++++++.+......... ....++..++++.++++.+.. .+.+++++++.+++++
T Consensus 307 ~SfSKs~g~--~GG~i~~~~~li~~l~~~~~~~~~-~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~ 383 (489)
T PLN02483 307 GTFTKSFGS--CGGYIAGSKELIQYLKRTCPAHLY-ATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRS 383 (489)
T ss_pred Eecchhccc--CceEEEcCHHHHHHHHHhCccccc-cCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence 499999984 348999999999988743221111 223455666667777876542 2356778888888888
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceee--ec
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SL 390 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~--~~ 390 (411)
.|+++ ++.......+.++++.+.. ......+.+.|.++||.+.+.++ ..+|+ +.
T Consensus 384 ~L~~~----G~~v~~~~~sp~~~l~l~~-------------~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa 446 (489)
T PLN02483 384 ELQKM----GFEVLGDNDSPVMPIMLYN-------------PAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISA 446 (489)
T ss_pred HHHHC----CCcccCCCCCCEEEEEECC-------------HHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCC
Confidence 88876 2211112234566665521 22346788999999999986543 23455 56
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|++++++++++|+++++.
T Consensus 447 ~~t~edId~~l~~L~~~~~~ 466 (489)
T PLN02483 447 SHSREDLIKALEVISEVGDL 466 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999998764
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=227.41 Aligned_cols=327 Identities=13% Similarity=0.094 Sum_probs=216.1
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.++||.++ .+..-..|.+.+++.+.+.....|+ +..++++.+++++....+..++|++|+|+++++..+++..
T Consensus 86 ~~i~L~~g---~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l- 161 (431)
T PRK15481 86 PLHDLAGG---NPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAH- 161 (431)
T ss_pred hhhhhhcC---CCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHh-
Confidence 35666666 3333244667777766555432333 2356777777777654444579999999999999998742
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc-c
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP-V 192 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~-~ 192 (411)
..+++.|++.+|+|+... ......|..+..++.. ..++ |++.++++++. +++++++.| .
T Consensus 162 -~~pgd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~-~~g~--------------~~~~l~~~~~~---~~k~i~~~p~p 221 (431)
T PRK15481 162 -LLPGDSVAVEDPCFLSSI-NMLRYAGFSASPVSVD-AEGM--------------QPEKLERALAQ---GARAVILTPRA 221 (431)
T ss_pred -CCCCCEEEEeCCCcHHHH-HHHHHcCCeEEeeccC-CCCC--------------CHHHHHHHHhc---CCCEEEECCCC
Confidence 345678999999988643 3344445544444332 1222 78999988863 456666664 3
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHh-CCEEEEecccccc-ccccCccccc-cCCCcchhhhhhhccCCcccccccccHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEY-FGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 269 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~-~~~li~De~~~g~-~~g~~~~~~~-~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~ 269 (411)
+|++|...+ .+.+++|.++|++| +++||+||+|..| ..+....... .+...-+.||||.+++|+|+||++++++++
T Consensus 222 ~NPTG~~~s-~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~ 300 (431)
T PRK15481 222 HNPTGCSLS-ARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSATS 300 (431)
T ss_pred CCCCCccCC-HHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHH
Confidence 344555544 55599999999999 9999999999877 3321111111 111223559999999999999999999988
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEE
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 345 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 345 (411)
+.+.... ...++..+.+++.++.++++.-.. +++++.++++.+.+.+.|++. ++.......|+++|+++
T Consensus 301 ~~~~~~~---~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~----~~~~~~p~gg~f~~~~l 373 (431)
T PRK15481 301 ARLRLRL---NSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY----GIAIPSPGDGLNLWLPL 373 (431)
T ss_pred HHHHHHH---hccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCeEEEEEEC
Confidence 8875311 122345678888888888753110 234555666666666666554 43332355689999988
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
... ..++.+.|.++||.+.|+.. +.+|++++ .+++++++++++|.+++++
T Consensus 374 ~~~---------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~~ 431 (431)
T PRK15481 374 DTD---------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALNR 431 (431)
T ss_pred CCC---------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 421 25788888899999999631 24788766 4789999999999998763
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=225.64 Aligned_cols=338 Identities=14% Similarity=0.127 Sum_probs=216.5
Q ss_pred EEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHH
Q 015230 30 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 105 (411)
Q Consensus 30 ~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~ 105 (411)
-++..|..++++..+ .+.-..++.+ +++.+++... ..|+ +..++++.+++++.. -.+++|++|+|+++|+
T Consensus 20 ~~~~~~~~~~~~~~~---e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~--~~~~~vi~t~G~~~al 93 (373)
T PRK07324 20 TYDIAESCIDSLTLE---ELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQN--VKPENILQTNGATGAN 93 (373)
T ss_pred ccccccCCCCCCcHH---HHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhcC--CChhhEEEcCChHHHH
Confidence 355667777777666 4443356667 8888888773 2332 234455555555421 1578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..++... ..+++.|++..++|.... ......|..+..++.....++.. |++++++.++ ++++
T Consensus 94 ~~~~~~l--~~~gd~Vl~~~P~y~~~~-~~~~~~g~~v~~v~~~~~~~~~~------------d~~~l~~~~~---~~~k 155 (373)
T PRK07324 94 FLVLYAL--VEPGDHVISVYPTYQQLY-DIPESLGAEVDYWQLKEENGWLP------------DLDELRRLVR---PNTK 155 (373)
T ss_pred HHHHHHh--CCCCCEEEEcCCCchhHH-HHHHHcCCEEEEEecccccCCCC------------CHHHHHHhCC---CCCc
Confidence 9988743 456678999888887543 33344455444444322222211 7888887765 3566
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-CccccccCCCcchhhhhhhcc-CCcccccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~ 262 (411)
+++++..+|++|.+.+ .+.+++|.++|++||+++|+||+|.++ ..+. ....+..+....+.||||.++ +|+|+||+
T Consensus 156 li~i~~p~NPtG~~~~-~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i 234 (373)
T PRK07324 156 LICINNANNPTGALMD-RAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWI 234 (373)
T ss_pred EEEEeCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEE
Confidence 7777666666776654 445999999999999999999999987 4332 111222222234569999999 79999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ecceE
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMF 341 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~ 341 (411)
++++++++.+.... ...+.+.+.+++.++..+++.. +++.++.++..+..++.+.+.....+......+ .|+++
T Consensus 235 ~~~~~li~~~~~~~---~~~~~~~~~~~q~~a~~~l~~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~ 309 (373)
T PRK07324 235 AANEEVIDILRKYR---DYTMICAGVFDDMLASLALEHR--DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTS 309 (373)
T ss_pred ecCHHHHHHHHHHh---CcEEecCChHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEE
Confidence 99999988887422 2335566778887777766422 223333333333333333333333343322333 35566
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+.+... .+..++++.| .++||.+.|+. .+.+|+++..+++.+++++++|++++++
T Consensus 310 ~i~~~~~-------------~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 310 FVKLDVD-------------MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred EEEeCCC-------------CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 6666321 1125677775 56799999985 2468999888999999999999998864
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=224.20 Aligned_cols=343 Identities=14% Similarity=0.067 Sum_probs=222.1
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC--CCCCHHHHHHHHHHHhhCC----CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF--GAPCLLENVLAEMVISAVP----SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~--~~~~~~~~~l~~~l~~~~~----~~~-~v~~~~~g~~a 104 (411)
.|+.++|+.++. .+++ .++.+.+++.+.+.... .| .+..++++.+++++.+.++ .++ +|++|+|++++
T Consensus 42 ~~~~~i~L~~g~--p~~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a 118 (410)
T PRK06290 42 PDMELIDMGVGE--PDEM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA 118 (410)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence 467789999884 3333 67778888887765421 12 2456788899999887654 244 79999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..++.. ....++.|++..++|.+. .......|..+..++.....++. .|++++++.+.. ++
T Consensus 119 l~~~~~~--~~~~gd~Vlv~~P~y~~~-~~~~~~~g~~v~~v~~~~~~~~~------------~d~~~l~~~~~~---~~ 180 (410)
T PRK06290 119 LAMLPSC--FINPGDVTLMTVPGYPVT-GTHTKYYGGEVYNLPLLEENNFL------------PDLDSIPKDIKE---KA 180 (410)
T ss_pred HHHHHHH--hCCCCCEEEEeCCCCccH-HHHHHHcCCEEEEEecCCCcCCc------------CCHHHHHHhhcc---cc
Confidence 9998874 234667899999999864 33344455554444432111111 178888877752 45
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc---CCCcchhhhhhhcc-CCcc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~---~~~~d~~~~sK~~~-~G~~ 258 (411)
++++++..+|++|.+.+ .+.+++|.++|++|+++||+||+|.++ ..+.. ...... +....+.||||.++ +|+|
T Consensus 181 k~i~l~nP~NPTG~v~s-~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlR 259 (410)
T PRK06290 181 KLLYLNYPNNPTGAVAT-KEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWR 259 (410)
T ss_pred eEEEEECCCCCCCcCCC-HHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhh
Confidence 66666644556666554 444999999999999999999999877 33321 111111 12233569999997 7999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
+||+++++++++.+.... .....+.+.+++.++.++++..+. ++.+++++++.+++.+.|++. ++.......
T Consensus 260 iG~ii~~~~l~~~l~~~~---~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~p~g 332 (410)
T PRK06290 260 LAFVVGNELIVKAFATVK---DNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV----GFKAEMPGG 332 (410)
T ss_pred eEeEEeCHHHHHHHHHHH---hccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCe
Confidence 999999999988876322 112334445677777666643111 345556666666666666654 433233345
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC-eEeccCCC--cceeeecC---CCHHHHHHHHHHHHHHHHhC
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPSQF--EAGFTSLA---HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~v~~~~~--~~~~~~~~---~t~~~i~~~i~~l~~~~~~~ 411 (411)
|+++|+.+.+...+.. ...+..++++.|.++| +.+.|+.. ..+|++++ .++++.+++++.|++.|.++
T Consensus 333 ~f~l~v~lp~~~~~~~------~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 333 TFYLYVKAPKGTKSGI------KFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred eeEEEEECCCccccCC------CCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 7778888753211000 0012467889998885 55556532 25888766 58899999999999998764
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=196.26 Aligned_cols=335 Identities=20% Similarity=0.266 Sum_probs=232.5
Q ss_pred CeEEEeecCcEEEecCC--CEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCC------CCCCHHHHHHHHHHHhh
Q 015230 19 PIVFDSVKGSHMWDIDG--NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISA 88 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g--~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~------~~~~~~~~~l~~~l~~~ 88 (411)
.-++.+.+|+.+. .+| +.+++|.+| +|+|+ +||++.++-.++++.. .+. .++...+..|...+++.
T Consensus 49 erVi~s~q~p~i~-v~G~~k~ilnFcaN---nYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqf 124 (417)
T KOG1359|consen 49 ERVITSRQGPTIQ-VKGSDKKILNFCAN---NYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQF 124 (417)
T ss_pred eeEEeecccceEE-Eeccccceeeeccc---ccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHH
Confidence 3466777777776 444 578999999 99999 9999999999999982 211 35677888888888777
Q ss_pred CCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 89 VPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 89 ~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
. +.++.++.+++-.|+..++... .++.+. +..+.-.|........+. .+..|-
T Consensus 125 h-~rED~ilypscfdANag~feai--l~pedA-vfSDeLNhASIIdGirLc-----------------------kry~h~ 177 (417)
T KOG1359|consen 125 H-GREDTILYPSCFDANAGAFEAI--LTPEDA-VFSDELNHASIIDGIRLC-----------------------KRYRHV 177 (417)
T ss_pred h-CCCceEEeccccccchHHHHHh--cChhhh-hhccccccchhhhhhHHH-----------------------hhhccc
Confidence 7 6777888888999998888632 233333 333444454321111111 122233
Q ss_pred CHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCC--C
Q 015230 169 DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGV--T 243 (411)
Q Consensus 169 d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~--~ 243 (411)
|+-+++..+.. .+.+.++|..+.++++.|.+.| +++|.++++|||.+|++||+|+ || .......-+.+++ +
T Consensus 178 dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~ 253 (417)
T KOG1359|consen 178 DVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGD 253 (417)
T ss_pred hhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCc
Confidence 67777755543 3357889999999999999999 9999999999999999999996 77 3223344455664 4
Q ss_pred cchh--hhhhhccCCcccccccccHHHHHHhcCCC-CcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 015230 244 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 319 (411)
Q Consensus 244 ~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 319 (411)
+|++ |++|+++| ---||..+++.++..+++.. ++.++++.++..+. .+.++++.+.. .+..+..+.+.+++++
T Consensus 254 vdiinsTLgKAlGg-a~GGyttgp~~li~llrqr~RpylFSnslppavV~--~a~ka~dllm~s~~~i~~~~a~~qrfr~ 330 (417)
T KOG1359|consen 254 VDIINSTLGKALGG-ASGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVG--MAAKAYDLLMVSSKEIQSRQANTQRFRE 330 (417)
T ss_pred ceehhhhhhhhhcC-CCCCCccCChhHHHHHHhcCCceeecCCCChhhhh--hhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6654 89999984 13567899999999998644 44444444444444 44455655444 7778888899999988
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc-------ee--eec
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GF--TSL 390 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~-------~~--~~~ 390 (411)
..+..... +. ...-.+..+.+ ++...+.+.++.|+++||+|-...++. +| ++.
T Consensus 331 ~me~aGft--Is---g~~hPI~pv~l-------------Gda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSA 392 (417)
T KOG1359|consen 331 FMEAAGFT--IS---GASHPICPVML-------------GDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISA 392 (417)
T ss_pred HHHhcCce--ec---CCCCCccceec-------------ccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEeh
Confidence 88765211 11 01112333333 556677889999999999996665443 33 479
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 015230 391 AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~ 409 (411)
.+|+|+||++++++.++.+
T Consensus 393 aHt~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 393 AHTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred hcCHHHHHHHHHHHHHHHH
Confidence 9999999999999998865
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=223.64 Aligned_cols=331 Identities=14% Similarity=0.106 Sum_probs=215.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.|..++|+..+ .+.-..++.+.+++.+.+... ..|. +..++++.+++++.+.++ .++ .+++|+|++++
T Consensus 29 ~~~~~i~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~ 105 (385)
T PRK09276 29 RGVDVISLGIG---DPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEG 105 (385)
T ss_pred cCCCEEEecCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 45668999888 332225778899998887652 1232 235788899999887654 355 58899999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.. ..+++.|++.+++|... .......|..+..++.....++.. |++++++.+. +++
T Consensus 106 i~~~~~~~--~~~gd~Vl~~~P~y~~~-~~~~~~~g~~~~~v~~~~~~g~~~------------d~~~l~~~~~---~~~ 167 (385)
T PRK09276 106 IAHIPLAF--VNPGDVVLVPDPGYPVY-KIGTIFAGGEPYFMPLKEENGFLP------------DLDAIPEDVA---KKA 167 (385)
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCcCh-HHHHHHcCCEEEEEecCCCCCCcC------------CHHHHHHhcc---ccc
Confidence 99988743 34667899999998754 333444555444443322222211 7888877665 245
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--c--cccc-cCCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--G--AQEY-FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~--~~~~-~~~~~d~~~~sK~~~-~G~ 257 (411)
+++++++.+|++|.+.+ .+.+++|.++|++|+++||+||+|.++ ..+.. . ..+. .+....+.||||.++ +|+
T Consensus 168 ~~v~l~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl 246 (385)
T PRK09276 168 KLMFINYPNNPTGAVAD-LEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGW 246 (385)
T ss_pred eEEEEeCCCCCCCCCCC-HHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcch
Confidence 66666644566666554 445999999999999999999999877 33311 1 1111 122344669999997 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+..... ....+.+++.+.++.++++.... +++++.++++.+++.+.|++. ++.....
T Consensus 247 RiG~~i~~~~l~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~ 319 (385)
T PRK09276 247 RIGFAVGNADLIAGLGKVKS---NVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL----GLEVEPP 319 (385)
T ss_pred hheeeeCCHHHHHHHHHHHh---hccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCC
Confidence 99999999999888764221 11233455666666666642111 344455555566666666553 3322223
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
..|+++|+++... .+..++.+.|. ++||.+.++. .+.+|++++.+++++.+++++|.+
T Consensus 320 ~~~~~~~v~~~~~-------------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 320 KATFYVWAPVPKG-------------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred CcceEEEEECCCC-------------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 3466788887421 12356777775 5799999973 246899888889999999988864
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=205.78 Aligned_cols=341 Identities=13% Similarity=0.063 Sum_probs=236.3
Q ss_pred CEEEeccCCccccccCC-CcHHHHHHHHHHHHcCCCCCCC-----CHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGAP-----CLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
+.++-+..+-.+.+-.+ ..++..+|+.+++..+...+|. ...++++++.+.+.++ .+++|++|.|+++|++
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 46777777744333444 7788999999999997655443 5667888888887776 5899999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++.++ ..++..|++..|+|+ +++.-..-.+-+++++..-...++ .+ |++.+|.+++++ ..++
T Consensus 141 ~~i~~L--A~p~aNILlPrPGfp-~Y~~~a~~~~lEVR~ydlLPe~~w---------eI---DL~~veal~DEN--T~Ai 203 (447)
T KOG0259|consen 141 LAISSL--ANPGANILLPRPGFP-LYDTRAIYSGLEVRYYDLLPEKDW---------EI---DLDGVEALADEN--TVAI 203 (447)
T ss_pred HHHHHh--cCCCCceecCCCCCc-hHHHhhhhcCceeEeecccCcccc---------ee---chHHHHHhhccC--eeEE
Confidence 999854 256678999999997 444444444555655433111111 11 899999999854 6788
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc-cCccccccC-CCcch--hhhhh-hccCCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQEYFG-VTPDL--TTLGK-IIGGGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g-~~~~~~~~~-~~~d~--~~~sK-~~~~G~~~g 260 (411)
+++||.|+.|+++.... |++|+++|+|+|+++|.||+|..+ ..+ ++..+..+. +.|-+ .++|| |+-.|||+|
T Consensus 204 vviNP~NPcGnVys~~H--L~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlG 281 (447)
T KOG0259|consen 204 VVINPNNPCGNVYSEDH--LKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLG 281 (447)
T ss_pred EEeCCCCCCcccccHHH--HHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceee
Confidence 99999999998887766 999999999999999999999877 444 333444443 34543 47899 556999999
Q ss_pred cccccH--------HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 261 AYGGRR--------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 261 ~~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
|++.+. ..++.+.+ +...+..++.+.++|.-..|+...+ +....-++.+.....++|+++ |
T Consensus 282 Wi~~hD~~gvf~~~~~~q~~~~----~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~I----P 353 (447)
T KOG0259|consen 282 WIALHDPRGVFRDTKVVQGIKN----FLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDI----P 353 (447)
T ss_pred eEEEecccccccchHHHHHHHH----HHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcC----C
Confidence 997642 12223321 1223556677777777666654332 344556777777778888776 5
Q ss_pred Cce-EEeeecc-eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHH
Q 015230 330 HAI-CGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITA 403 (411)
Q Consensus 330 ~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~ 403 (411)
... .+++.|. ++|+.+.-.... .-.++.+...+..+|+.+++.||. .+.+|+.+....+.++++.+|
T Consensus 354 ~l~cp~kPeg~mylmv~l~~s~~~-------~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~R 426 (447)
T KOG0259|consen 354 CLTCPVKPEGCMYLMVKLNLSLFP-------DIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSR 426 (447)
T ss_pred CcccCcCCCcceEEEeccchhhhc-------cccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHH
Confidence 443 5566665 455544211111 223344555666678899999984 456899999999999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++.+.+
T Consensus 427 ik~Fc~R 433 (447)
T KOG0259|consen 427 IKEFCDR 433 (447)
T ss_pred HHHHHHh
Confidence 9988754
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=223.18 Aligned_cols=341 Identities=16% Similarity=0.122 Sum_probs=216.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCC---CCCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSF---GAPCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~---~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.+..++||..+ .+....++.+.+++.+.+... ..| .+...+++.+++++.+.++ .++ +|++|+|++++
T Consensus 31 ~~~~~~~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMG---NPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCc---CCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 45678999887 555445666778777766542 223 2345688999999987754 456 79999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHH----HHHHHHHcC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----ALENLFENN 180 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~l~~~~~~~ 180 (411)
+..+++.. ..+++.|++.+|+|...... ....|..+..++.....+.. + |++ .+++++++.
T Consensus 108 l~~~~~~l--~~~gd~Vlv~~P~y~~~~~~-~~~~g~~~~~v~~~~~~~~~---------~---d~~~l~~~l~~~~~~~ 172 (403)
T PRK08636 108 YVHLVQAI--TNPGDVAIVPDPAYPIHSQA-FILAGGNVHKMPLEYNEDFE---------L---DEDQFFENLEKALRES 172 (403)
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCcchHHH-HHhcCCEEEEEeccccccCc---------c---ChhhhhhHHHHHHhhc
Confidence 99998842 35678899999999865433 44455544443332111110 0 444 456666654
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC----cccccc-CCCcchhhhhhhcc
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEYF-GVTPDLTTLGKIIG 254 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~----~~~~~~-~~~~d~~~~sK~~~ 254 (411)
..++++++++..+|++|.+.+ .+.+++|.++|++|+++||+||+|..+ ..+.. ...+.. +....+.||||.++
T Consensus 173 ~~~~~~i~~~~P~NPTG~~~s-~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 251 (403)
T PRK08636 173 SPKPKYVVVNFPHNPTTATVE-KSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYN 251 (403)
T ss_pred cCCceEEEEeCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccC
Confidence 345666555543445554444 344999999999999999999999877 33311 111111 12223458999997
Q ss_pred -CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 255 -GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 255 -~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
+|+|+||+++++++++.+.... ....++.+.+++.++..+++.... +++++.++++.+.+.+.|++. ++.
T Consensus 252 ~~GlRiG~iv~~~~li~~~~~~~---~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~ 324 (403)
T PRK08636 252 MAGWRVGFVVGNKKLVGALKKIK---SWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANA----GWE 324 (403)
T ss_pred CccceeeeeeCCHHHHHHHHHHH---HHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCc
Confidence 8999999999999988876321 111234445555555544431111 233444555555555555542 432
Q ss_pred eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH-HHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHH
Q 015230 332 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAA 404 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l 404 (411)
......|+++|+.+.+.. ......++.+. +.++||.+.|+. .+.+|+++..+++++++++++|
T Consensus 325 ~~~p~~g~~~~~~l~~~~----------~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl 394 (403)
T PRK08636 325 LQKPRASMFVWAKIPEPA----------RHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNI 394 (403)
T ss_pred ccCCCcceEEEEECCCcc----------CCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHH
Confidence 223456889999884320 00112566665 456799999973 2458998888999999999999
Q ss_pred HHHHHh
Q 015230 405 EKVLRQ 410 (411)
Q Consensus 405 ~~~~~~ 410 (411)
+++++.
T Consensus 395 ~~~l~~ 400 (403)
T PRK08636 395 KKFLKE 400 (403)
T ss_pred HHHHHh
Confidence 998865
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=223.15 Aligned_cols=331 Identities=14% Similarity=0.114 Sum_probs=218.5
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.|..++||..+. ..++ .++.+.+++.+.+... ..|+ +..++++.+++++.+.++ ..+ +|++|+|++++
T Consensus 27 ~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~ 103 (383)
T TIGR03540 27 EGVDVISLGIGD--PDLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG 103 (383)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence 467789999883 2233 5778899998877642 2232 235788899999987654 344 68999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.. ..+++.|++.+++|+... ......|..+..++.....++.. |++++++.+. +++
T Consensus 104 l~~~~~~~--~~~gd~vlv~~P~y~~~~-~~~~~~G~~v~~v~~~~~~g~~~------------d~~~l~~~~~---~~~ 165 (383)
T TIGR03540 104 IAHIPLAF--VNPGDIVLVPDPGYPVYR-IGTLFAGGEPYEMPLKEENGFLP------------DFDAIPEDIA---KKA 165 (383)
T ss_pred HHHHHHHh--CCCCCEEEEeCCCCcchH-HHHHhcCCEEEEEecCcccCCcc------------CHHHHHhhcc---ccc
Confidence 99998742 356788999999998643 34445565555544322222211 7888887775 245
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc--Cc--cccc-cCCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GG--AQEY-FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~--~~--~~~~-~~~~~d~~~~sK~~~-~G~ 257 (411)
++++++..+|++|...+ .+.+++|.++|++|++++|+||+|.++ ..+. .. ..+. ......+.||||.++ +|+
T Consensus 166 ~~v~i~~P~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~Gl 244 (383)
T TIGR03540 166 KLMFINYPNNPTGAVAP-LKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGW 244 (383)
T ss_pred eEEEEeCCCCCcCccCC-HHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccc
Confidence 66666644556666654 555999999999999999999999877 4331 11 1111 122234569999997 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+..... ....+.+.+++.++.++++...+ +++++.++++.+.+.+.|++. ++.....
T Consensus 245 RiG~~i~~~~l~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~ 317 (383)
T TIGR03540 245 RIGMAVGNADLIAGLGKVKT---NVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI----GIDVEKP 317 (383)
T ss_pred eeeEEeCCHHHHHHHHHHHH---hcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEecCC
Confidence 99999999999887763221 11334455667766666643211 344555666666666666553 4333333
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
..|+++|+++.+. .+..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|.+
T Consensus 318 ~~~~~~~~~l~~~-------------~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 318 KATFYVWVPVPEG-------------YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred CcceEEEEECCCC-------------CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 4577788887421 12356777764 6799999873 245899888889999999988864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=222.77 Aligned_cols=332 Identities=14% Similarity=0.096 Sum_probs=217.7
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.|+.++||..+ ++....++++.+++.+.+... ..|+ +..++++++++++.+.++ .++ .+++|+|++++
T Consensus 33 ~g~~~i~l~~g---~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~a 109 (394)
T PRK05942 33 QGLDLIDLGMG---NPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEG 109 (394)
T ss_pred cCCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHH
Confidence 46678999877 555445667888887777542 1232 235788999999987654 455 58999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..++... +.+++.|++.+++|.+....+ ...|..+..++.....++. -|++++++.+. +++
T Consensus 110 l~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~~ 171 (394)
T PRK05942 110 LTHLALAY--VNPGDVVLVPSPAYPAHFRGP-LIAGAQIYPIILKPENDWL------------IDLSSIPEEVA---QQA 171 (394)
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCcchHHHH-HHcCCEEEEeecCCccCCc------------cCHHHHHHhcc---ccc
Confidence 99988742 456788999999998754443 3344444333322111211 17888888775 356
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccc---ccc-cCCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGA---QEY-FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~---~~~-~~~~~d~~~~sK~~~-~G~ 257 (411)
++++++..+|++|.+.+ .+.+++|.++|++|++++|+||+|..+ ..+. ... .+. .+....+.||||.++ +|+
T Consensus 172 k~i~l~~P~NPtG~~~s-~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~Gl 250 (394)
T PRK05942 172 KILYFNYPSNPTTATAP-REFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGW 250 (394)
T ss_pred eEEEEcCCCCCCCCcCC-HHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhh
Confidence 66666644556665554 444999999999999999999999877 3331 111 111 122344569999997 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.... ....++.+.+++.++.++++.... ++.+++++++.+++.+.|++. ++.....
T Consensus 251 RiG~i~~~~~l~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~ 323 (394)
T PRK05942 251 RVGFVVGNRHIIQGLRTLK---TNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL----GWNIPPT 323 (394)
T ss_pred heeeeecCHHHHHHHHHHH---hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCC
Confidence 9999999999998887422 122445566777777777753222 445556666666666666543 4322233
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHH-HHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR-GMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
..|+++|+.+... .+..++.. .+.++||.+.++. .+.+|+++..+.+.+.+++++|.++
T Consensus 324 ~~~~f~~~~~~~~-------------~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 324 KATMYLWVPCPVG-------------MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred CeeeEEEEECCCC-------------CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 4567899987421 01134444 5567899998863 2468998877778888888887764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=219.59 Aligned_cols=333 Identities=15% Similarity=0.133 Sum_probs=219.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|..++++..+.. +++ .++.+++++.+.++.. ..| .+..++++.+++++.+.++ .+++|++|+|+++++.
T Consensus 30 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 106 (387)
T PRK08960 30 AGHDVIHLEIGEP--DFT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALL 106 (387)
T ss_pred cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHH
Confidence 3567888888742 222 5888999999988753 223 2346788888988877654 6789999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++.+. ..+++.|++.+++|......+ ...|..+..++.....++. -|++++++.++. +...+
T Consensus 107 ~~~~~~--~~~gd~vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~~--~~~~i 169 (387)
T PRK08960 107 LASSLL--VDPGKHWLLADPGYPCNRHFL-RLVEGAAQLVPVGPDSRYQ------------LTPALVERHWNA--DTVGA 169 (387)
T ss_pred HHHHHh--cCCCCEEEEcCCCCcchHHHH-HhcCCeEEEEecCcccCCC------------CCHHHHHHHhCc--cceEE
Confidence 988753 456788999999998765433 3345544444332221111 178888887763 23445
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc---hhhhhhhcc-CCccccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGA 261 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d---~~~~sK~~~-~G~~~g~ 261 (411)
++++| +|++|...+ .+.+++|+++|++||+++|+||+|.++ ..+... ......++ +.||||.++ +|+|+||
T Consensus 170 ~i~~p-~NPtG~~~~-~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~GlRiG~ 245 (387)
T PRK08960 170 LVASP-ANPTGTLLS-RDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTGWRLGW 245 (387)
T ss_pred EEECC-CCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcccEEEE
Confidence 55565 445565554 444999999999999999999999877 322211 11222233 458999998 8999999
Q ss_pred ccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeee
Q 015230 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYI 337 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 337 (411)
+++++++++.+... ....+.+.+.+++.++.++++. ... +++++.++++.+.+.+.|++ +++.. .....
T Consensus 246 ~~~~~~~~~~~~~~---~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~g 318 (387)
T PRK08960 246 LVAPPAAVPELEKL---AQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE----LGFGIAVEPQG 318 (387)
T ss_pred EEcCHHHHHHHHHH---HhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCcCCcCCCe
Confidence 99999988877632 1222445677888877777642 111 23344455555555555544 34322 22345
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC-------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
|+++|+++.+.. .+..++++.|. ++||.+.|+. .+.+|+++..+.+++.+++++|.+++.
T Consensus 319 ~~f~~~~~~~~~------------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 319 AFYLYADISAFG------------GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred eEEEEEeccccC------------CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 788899885311 11256777654 6799999872 235899888788999999999988764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=221.76 Aligned_cols=333 Identities=14% Similarity=0.090 Sum_probs=222.4
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 108 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~a 108 (411)
..+++|..|.. ++. .++.+++++.+.+.... .|. +..++++.+++++.+.++ .++++++|+|+++++..+
T Consensus 24 ~~~i~l~~g~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~ 100 (382)
T PRK06108 24 EGVLPLWFGES--DLP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA 100 (382)
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence 35788888742 222 57889999998887642 232 346788999999987765 578999999999999998
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+... ..+++.|++.+++|.... ......|..+..++.... .++. -|++++++.++. +++++
T Consensus 101 ~~~l--~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~~~~------------~d~~~l~~~~~~---~~~~i 162 (382)
T PRK06108 101 AQAL--VGPGDEVVAVTPLWPNLV-AAPKILGARVVCVPLDFGGGGWT------------LDLDRLLAAITP---RTRAL 162 (382)
T ss_pred HHHh--cCCCCEEEEeCCCccchH-HHHHHCCCEEEEeeCCCCCCCcc------------CCHHHHHHhcCc---cceEE
Confidence 8743 345678888888887543 333444544444333211 1110 178888887752 45555
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc-ccCc--cccccCCC---cchhhhhhhcc-CCccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG--AQEYFGVT---PDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~-g~~~--~~~~~~~~---~d~~~~sK~~~-~G~~~ 259 (411)
+++..+|++|.+. +.+.+++|.++|++||+++|+||+|.++ .. +... ..+..... .-+.||||.++ +|+|+
T Consensus 163 ~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri 241 (382)
T PRK06108 163 FINSPNNPTGWTA-SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRL 241 (382)
T ss_pred EEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccce
Confidence 5555556667654 4566999999999999999999999987 43 2111 11111111 12458999998 79999
Q ss_pred ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 260 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
||+++++++++.+... ....+.+.+++++.++.++++...+ ++++++++++.+++.+.|+++. ++.......
T Consensus 242 G~~~~~~~~~~~~~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~p~~ 315 (382)
T PRK06108 242 GWLVAPPALGQVLEKL---IEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALP---GVEVAKPDG 315 (382)
T ss_pred eeeeCCHHHHHHHHHH---HHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCC---CCcccCCCe
Confidence 9999999998887632 1223456678888888777753211 4455566666666666665541 222222334
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
|+++|+.+... .+..++++.|. ++||.+.|+. .+.+|+++..+++++++++++|++++.
T Consensus 316 g~~~~~~l~~~-------------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 316 AMYAFFRIPGV-------------TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred eEEEEEeCCCC-------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 77888877421 11256777764 6799998863 345899877799999999999999875
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=221.20 Aligned_cols=331 Identities=12% Similarity=0.003 Sum_probs=217.1
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC-C---C-CEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP-S---I-EMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~-~---~-~~v~~~~~g~~a~ 105 (411)
.|+.++|+..+. .+++ .++.+++++.+.+.....|+ +..++++.+++++.+.++ . + ++|++|+|+++++
T Consensus 27 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al 103 (396)
T PRK09147 27 ADLPPISLSIGE--PKHP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL 103 (396)
T ss_pred cCCCeEecCCCC--CCCC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence 478899998884 2232 57788888887766533342 346788999999987765 2 3 4899999999999
Q ss_pred HHHHHHHHhccC---CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 106 MGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 106 ~~al~~~~~~~~---~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
..+++.. ..+ ++.|++.+++|.... ......|..+..++.....++.. |++.+++.+..
T Consensus 104 ~~~~~~l--~~~~~~gd~vlv~~P~y~~~~-~~~~~~g~~~~~vp~~~~~~~~~------------d~~~l~~~~~~--- 165 (396)
T PRK09147 104 FAFAQTV--IDRDGPGPLVVCPNPFYQIYE-GAALLAGAEPYFLNCDPANNFAP------------DFDAVPAEVWA--- 165 (396)
T ss_pred HHHHHHH--cCCCCCCCEEEEcCCCccchH-HHHHhcCCEEEEeccCccccCcc------------CHHHHHHHHhh---
Confidence 9988743 233 567899989887543 33444555555544422222211 78888877652
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc--Ccc-c---ccc-----CCCcchhhhh
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGA-Q---EYF-----GVTPDLTTLG 250 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~--~~~-~---~~~-----~~~~d~~~~s 250 (411)
++++++++..+|++|.+.+ ++.+++|.++|++|+++||+||+|..+ ..+. ... . ... +...-+.|||
T Consensus 166 ~~k~i~l~nP~NPTG~~~s-~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 244 (396)
T PRK09147 166 RTQLLFVCSPGNPTGAVLP-LDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLS 244 (396)
T ss_pred ccEEEEEcCCCCCcCccCC-HHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccc
Confidence 4555555444555565544 555999999999999999999999877 3331 110 1 011 1122345999
Q ss_pred hhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 251 KIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 251 K~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
|.++ +|+|+||+++++++++.+.... ...+++.+++++.++.+++..-.. .+.++.++++.+.+.+.|++. .
T Consensus 245 K~~~~~GlRiG~~~~~~~l~~~~~~~~---~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---~ 318 (396)
T PRK09147 245 KRSNVPGLRSGFVAGDAALLKKFLLYR---TYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV---L 318 (396)
T ss_pred cccCCccceeeeecCCHHHHHHHHHHh---hhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 9987 7999999999999988776321 122455677777776665531100 233444555555555555543 1
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------------CcceeeecCCCHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------FEAGFTSLAHSSD 395 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------------~~~~~~~~~~t~~ 395 (411)
. ......|+++|+++.. ...++.+.|. ++||.+.|+. .+.+|++++.+++
T Consensus 319 ~--~~~p~~g~f~~~~~~~---------------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~ 381 (396)
T PRK09147 319 D--VQLPDAGFYLWAKVPG---------------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLA 381 (396)
T ss_pred C--CCCCCeeEEEEEECCC---------------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHH
Confidence 2 1224568899998841 0146667665 6799998873 2358999888999
Q ss_pred HHHHHHHHHHHHHH
Q 015230 396 DIQHTITAAEKVLR 409 (411)
Q Consensus 396 ~i~~~i~~l~~~~~ 409 (411)
++++++++|.+++.
T Consensus 382 ~l~~~l~rl~~~~~ 395 (396)
T PRK09147 382 ECVEAAERIVDFCR 395 (396)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=230.30 Aligned_cols=340 Identities=11% Similarity=0.066 Sum_probs=215.0
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|+.+++|..+.. +++++ .++.+++++.+++.....|+ +..++++.+++++.+... .+++|++|+|+++++.
T Consensus 144 ~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~ 222 (517)
T PRK13355 144 AGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELIN 222 (517)
T ss_pred cCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHH
Confidence 5788999998732 44576 67889999988877643343 235677888888866543 5789999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.. ...++.|++.+++|..... .....|..+..++.....++.. |++++++.++. +...+
T Consensus 223 ~~~~~l--~~~Gd~Vli~~P~y~~y~~-~~~~~g~~~v~~~~~~~~~~~~------------d~~~l~~~~~~--~~k~i 285 (517)
T PRK13355 223 LSMSAL--LDDGDEVLIPSPDYPLWTA-CVNLAGGTAVHYRCDEQSEWYP------------DIDDIRSKITS--RTKAI 285 (517)
T ss_pred HHHHHh--CCCCCEEEEcCCCCcCHHH-HHHHCCCEEEEeecCcccCCCC------------CHHHHHHhcCc--CceEE
Confidence 998753 4567889999999986544 3334454444333221112211 88999888762 23345
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccCCCcc-----hhhhhhhcc-CCcc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPD-----LTTLGKIIG-GGLP 258 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~~~~d-----~~~~sK~~~-~G~~ 258 (411)
++++| +|++|.+.+ .+.+++|.++|++|+++||+||+|..| ..+.. ... ....++ +.||||.++ +|||
T Consensus 286 ~i~nP-~NPTG~v~~-~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~--~~~~~~~~vi~~~S~SK~~~~~G~R 361 (517)
T PRK13355 286 VIINP-NNPTGALYP-REVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSI--ASLAPDLFCVTFSGLSKSHMIAGYR 361 (517)
T ss_pred EEECC-CCCCCcCcC-HHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccH--HHhCCCCeEEEEecchhhccCcccc
Confidence 56666 555565554 555999999999999999999999877 43321 111 111223 247999997 7999
Q ss_pred cccccc--cHHH----HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHH---HHHHHHHHHHHHHHHHHHhc
Q 015230 259 VGAYGG--RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYE---YLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 259 ~g~~~~--~~~~----~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~---~~~~~~~~~~~~l~~~~~~~ 328 (411)
+||+++ ++++ ++.+.. .....++.+.+++.++.++++.... ++..+ ++.++.+++.+.|+++ .
T Consensus 362 iG~~i~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~ 434 (517)
T PRK13355 362 IGWMILSGNKRIAKDYIEGLNM----LANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAI---P 434 (517)
T ss_pred eEEEEeeCchhhHHHHHHHHHH----HhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 999974 4443 333321 1112345677888888777742111 11211 2233334444444432 1
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTIT 402 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~ 402 (411)
++.......++++|+++..... +..++...+.+.|.++||.+.|+. .+.+|++++.++++++++++
T Consensus 435 g~~~~~p~g~fy~~~~l~~~~~--------~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~ 506 (517)
T PRK13355 435 GISAVKPKAAFYIFPKIDVKKF--------NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMD 506 (517)
T ss_pred CcccCCCCeeeEEEeecCcccC--------CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHH
Confidence 2222334456677777642100 001122455677888899999873 34589999899999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|.+++..
T Consensus 507 rl~~~~~~ 514 (517)
T PRK13355 507 RLADFFSY 514 (517)
T ss_pred HHHHHHHH
Confidence 99998864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=220.55 Aligned_cols=332 Identities=18% Similarity=0.127 Sum_probs=217.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 108 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~a 108 (411)
..++||..+. ..+. .++.+.+++.+.+... ..|. +..++++.+++++.+.++ .++++++|+|+++|+..+
T Consensus 29 ~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~ 105 (384)
T PRK06348 29 PDIIDLSLGD--PDLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLA 105 (384)
T ss_pred CCcEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHH
Confidence 3578988873 2222 5677877776655442 2232 336788899999987653 688999999999999999
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
+.+. ..+++.|++.+++|.+... .....|..+..++.....++. -|++++++.++. ++++++
T Consensus 106 ~~~~--~~~gd~vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~---~~~~v~ 167 (384)
T PRK06348 106 LQSI--LDPGDEVIIHEPYFTPYKD-QIEMVGGKPIILETYEEDGFQ------------INVKKLEALITS---KTKAII 167 (384)
T ss_pred HHHh--cCCCCEEEEeCCCCcchHH-HHHHcCCEEEEecCCcCcCCc------------CCHHHHHHhhCc---CccEEE
Confidence 8753 3456789999888876443 333444444433321122211 188999888762 345555
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-cccc---CCCcchhhhhhhcc-CCcccccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYF---GVTPDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~~~---~~~~d~~~~sK~~~-~G~~~g~~ 262 (411)
++..+|++|... +.+.+++|.++|++|+++||+||+|.++ ..+.... .... +...-+.||||.++ +|+|+||+
T Consensus 168 l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~ 246 (384)
T PRK06348 168 LNSPNNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYV 246 (384)
T ss_pred EeCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceee
Confidence 444455566555 4555999999999999999999999987 3322111 1111 11223559999999 89999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecce
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 340 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 340 (411)
++++++++.+.. ......++.+++++.++..+++..+. +++++.++++.+++.+.|+++ .+........|++
T Consensus 247 v~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~---~~~~~~~p~gg~~ 320 (384)
T PRK06348 247 IAPDYIIETAKI---INEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESI---PNLSLHPPKGSIY 320 (384)
T ss_pred ecCHHHHHHHHH---HHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeccCCeeEE
Confidence 999988887763 12233567788888888777753221 344555666666666666543 1222223345778
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
+|+++..... +..++++.+. ++||.+.|+. .+.+|++++.+++++++++++|++.
T Consensus 321 ~~~~~~~~~~------------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 321 AFINIKKTGL------------SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred EEEecccCCC------------CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 8998743211 1256787775 5699999874 2458998888999999999999764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=223.00 Aligned_cols=338 Identities=15% Similarity=0.106 Sum_probs=218.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.|+.++||..+. .+++ .++.+.+++.+.+... ..|. +..++++.+++++.+.++ .++ +|++|+|++++
T Consensus 28 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 28 AGADIIDLGMGN--PDLP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred cCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 567889998772 2233 4678888888876542 2232 345788899999987654 356 89999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..++... ..+++.|++.+++|+.....+ ...|..+..++...... .++++++.++.+..++
T Consensus 105 l~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~-~~~g~~v~~v~~~~~~~---------------~~~~l~~~~~~~~~~~ 166 (405)
T PRK09148 105 FANMAQAI--TAPGDVILCPNPSYPIHAFGF-IMAGGVIRSVPAEPDEE---------------FFPALERAVRHSIPKP 166 (405)
T ss_pred HHHHHHHh--cCCCCEEEEcCCCCcccHHHH-HhcCCEEEEEeCCCCCC---------------CccCHHHHHhhccccc
Confidence 99988743 346788999999998753333 34454444433211111 2233455555432345
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc--ccccc---CCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEYF---GVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~--~~~~~---~~~~d~~~~sK~~~-~G~ 257 (411)
++++++..+|++|...+ .+.+++|.++|++|+++||+||+|.+| ..+... ..... +....+.||||.++ +|+
T Consensus 167 ~~v~l~~P~NPtG~~~s-~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl 245 (405)
T PRK09148 167 IALIVNYPSNPTAYVAD-LDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW 245 (405)
T ss_pred eEEEEeCCCCCCCcCCC-HHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcch
Confidence 55555544555665554 555999999999999999999999877 333211 11111 12223569999999 899
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.... ...+++.+.+++.++.++++.... +++++.++++.+++.+.|++. ++.....
T Consensus 246 R~G~~v~~~~~i~~l~~~~---~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~p 318 (405)
T PRK09148 246 RMGFAVGNERLIAALTRVK---SYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA----GWDIPPP 318 (405)
T ss_pred heeeeeCCHHHHHHHHHHH---HHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc----CCccCCC
Confidence 9999999999998886321 222455567777777777652111 344555666666666666553 4332224
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
..|+++|+.+.... . .....++.+.+. ++||.+.|+. .+.+|+++..+.+++++++++|.+++
T Consensus 319 ~~g~f~~~~l~~~~-~---------~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l 388 (405)
T PRK09148 319 AASMFAWAPIPEAF-R---------HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFL 388 (405)
T ss_pred CeeEEEEEECCCcc-C---------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 45889999874310 0 001246666655 6899999973 24589988888999999999999887
Q ss_pred Hh
Q 015230 409 RQ 410 (411)
Q Consensus 409 ~~ 410 (411)
.+
T Consensus 389 ~~ 390 (405)
T PRK09148 389 SS 390 (405)
T ss_pred HH
Confidence 64
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=219.28 Aligned_cols=338 Identities=15% Similarity=0.127 Sum_probs=224.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC---C-CCEEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~---~-~~~v~~~~~g~~a~~~ 107 (411)
..++||..+. .+++ .++.+.+++.+.+... ..| .+..++++.+++++.+.++ . .++|++|+|+++|+..
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGE--PDFT-TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 5689998885 2333 4677888888887653 122 2346788889998877654 2 4789999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.. ..+++.|++.+++|.+.. ......|..+..++... .++. -|++.+++++++.+++++++
T Consensus 107 ~~~~~--~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~~~~~~-~~~~------------~d~~~l~~~~~~~~~~~~~i 170 (391)
T PRK07309 107 SLTAI--LEPGDKVLLPAPAYPGYE-PIVNLVGAEIVEIDTTE-NDFV------------LTPEMLEKAILEQGDKLKAV 170 (391)
T ss_pred HHHHh--cCCCCEEEEeCCCCcchH-HHHHHcCCEEEEEecCC-cCCc------------CCHHHHHHHhhccCCCeEEE
Confidence 98743 356788999999988753 34444555444433211 1110 17899999887644456777
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cc-ccc-cCCCcchhhhhhhcc-CCcccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEY-FGVTPDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~-~~~-~~~~~d~~~~sK~~~-~G~~~g~~ 262 (411)
+++.++|++|...+ .+.+++|.++|++|++++|+||+|.++ ..+.. .. ... .+...-+.||||.++ +|+|+||+
T Consensus 171 ~l~~P~NPtG~~~s-~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~ 249 (391)
T PRK07309 171 ILNYPANPTGVTYS-REQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLI 249 (391)
T ss_pred EEECCCCCCCcCcC-HHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEE
Confidence 66644556665554 334999999999999999999999987 43321 11 111 111223458999998 89999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecce
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 340 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 340 (411)
++++++++.+.... .....+.+.+++.++.++++.... ..+++.++++.+++.+.|++. ++.......|++
T Consensus 250 v~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~p~gg~~ 322 (391)
T PRK07309 250 FAPAEFTAQLIKSH---QYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL----GFKIIKPDGAFY 322 (391)
T ss_pred EeCHHHHHHHHHHH---hhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCeeEE
Confidence 99999988876321 222345677777877777653211 233455666666666666543 433333445777
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHH-HHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+|+.+.... ..+..++.+. +.++||.+.|+. .+.+|+++..+.+++++++++|++++.++
T Consensus 323 ~~~~l~~~~-----------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 323 IFAKIPAGY-----------NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred EEEECCCCC-----------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 888774311 0112466655 557899999874 34589988778899999999999998763
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=225.29 Aligned_cols=350 Identities=15% Similarity=0.120 Sum_probs=213.6
Q ss_pred CCCEEEeccCCcccccc--CC-CcHHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAII--GH-ADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~--g~-~~~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ 102 (411)
.|+.++++..+ ++. ++ .++.+.+++.+.+.... .| .+..++++.+++++.+.++ .+++|++|+|++
T Consensus 30 ~g~~~~~~~~G---~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~ 106 (433)
T PRK06855 30 LGVKITWENIG---DPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLG 106 (433)
T ss_pred ccccccccccC---CCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHH
Confidence 35667777665 553 45 67778888888775422 22 2346888999999988654 578999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+|+..++. .+.+++.|++.+++|++.........|..+..++.....++. -|++++++.++..+.
T Consensus 107 ~al~~~~~---l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~------------~d~~~l~~~~~~~~~ 171 (433)
T PRK06855 107 DAIAKIYG---LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWY------------PDLDDLENKVKYNPS 171 (433)
T ss_pred HHHHHHHH---hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCC------------CCHHHHHHHHhcCCC
Confidence 99988875 345678999999999974322222334333333322112221 188999999875322
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cc-cccc-C-CCcchhhhhhhcc-CC
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYF-G-VTPDLTTLGKIIG-GG 256 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~-~~~~-~-~~~d~~~~sK~~~-~G 256 (411)
...+++++|. |++|... +.+.+++|.++|++|+++||+||+|.++ ..+.. .. .... + ....+.||||.++ +|
T Consensus 172 ~~~i~l~~P~-NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pG 249 (433)
T PRK06855 172 IAGILLINPD-NPTGAVY-PKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPG 249 (433)
T ss_pred ceEEEEECCC-CCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCc
Confidence 3445566664 4455443 3455999999999999999999999988 43321 11 1111 1 1233569999998 89
Q ss_pred ccccccccc-----H---HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc--CChHHHHHHHHHHHHHHHHHH
Q 015230 257 LPVGAYGGR-----R---DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 257 ~~~g~~~~~-----~---~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+|+||++++ + .+++.+.... . .....+.+++.++.++++.- ++ +++++.++++.+.+.+.|+++
T Consensus 250 lRiG~ii~p~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~ 325 (433)
T PRK06855 250 SRCGWIEVYNADKDEVFKKYINSILNAK---M-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDV 325 (433)
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHhh---c-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999862 2 2333332111 1 13345677887777776421 11 233444555555555555442
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCC-Ccchhcc-cc-------------hHHHHHHHHHHHHcCeEeccCCC-----c
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVY-NFEDAKK-SE-------------TTKFARFYRGMLEEGVYFAPSQF-----E 384 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~-~~-------------~~~~~~~~~~l~~~Gi~v~~~~~-----~ 384 (411)
.+........|+++|+.+.+.... ....... ++ ..+.+.....+.++||.+.|+.. +
T Consensus 326 ---~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~ 402 (433)
T PRK06855 326 ---PGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELN 402 (433)
T ss_pred ---CCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCC
Confidence 122222344578999988542100 0000000 00 01112333556788999999842 2
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 385 AGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 385 ~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
.+|++++. +++++++++++|.+++++
T Consensus 403 ~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 403 GFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred ceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 48898774 899999999999998875
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-27 Score=220.43 Aligned_cols=338 Identities=15% Similarity=0.145 Sum_probs=222.1
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.|+.++||..+ ++.+..++.+.+++.+.+.... .|. +..++++.+++++.+.++ .++ ++++|+|++++
T Consensus 27 ~~~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~ 103 (395)
T PRK08175 27 RGEDIIDFSMG---NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEG 103 (395)
T ss_pred cCCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 35778999887 6655566778888887765422 222 346788899999887654 455 79999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..++... ..+++.|++..++|......+ ...|..+..++... .+ .+.++++++++....++
T Consensus 104 l~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~-~~--------------~~~~~l~~~l~~~~~~~ 165 (395)
T PRK08175 104 LAHLMLAT--LDHGDTVLVPNPSYPIHIYGA-VIAGAQVRSVPLVE-GV--------------DFFNELERAIRESYPKP 165 (395)
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCcchHHHH-HHcCCeEEEEeccc-CC--------------CcHHHHHHHHhhccCCc
Confidence 99877642 456678999999988654433 33444333322211 00 14678888887543456
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccccc---cCCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEY---FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~~~---~~~~~d~~~~sK~~~-~G~ 257 (411)
++++++..+|++|...+ .+.+++|.++|++||+++|+||+|.++ ..+.. ..... .+...-+.||||.++ +|+
T Consensus 166 ~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGl 244 (395)
T PRK08175 166 KMMILGFPSNPTAQCVE-LEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGW 244 (395)
T ss_pred eEEEEeCCCCCCCCCCC-HHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcch
Confidence 77777654566666555 444899999999999999999999877 33321 11111 112223468999997 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.... ....++.+.+++.++.++++..+. +++++.++++.+++.+.|++. ++.....
T Consensus 245 RiG~~~~~~~l~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~p 317 (395)
T PRK08175 245 RIGFMVGNPELVSALARIK---SYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA----GWMVEMP 317 (395)
T ss_pred hheeeeCCHHHHHHHHHHH---hhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc----CCcccCC
Confidence 9999999999988876322 112344555666666666642111 344555556666666666654 4332334
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
..|+++|+++.+... .....++++.+. ++||.|.|+. .+.+|+++..+++.+.+++++|.+++
T Consensus 318 ~~g~~i~i~l~~~~~----------~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 318 KASMYVWAKIPEPYA----------AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMF 387 (395)
T ss_pred CEEEEEEEECCcccC----------CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 468999999853210 011356776654 6799999973 23589988888999999999999988
Q ss_pred Hh
Q 015230 409 RQ 410 (411)
Q Consensus 409 ~~ 410 (411)
.+
T Consensus 388 ~~ 389 (395)
T PRK08175 388 RA 389 (395)
T ss_pred Hh
Confidence 75
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=220.80 Aligned_cols=331 Identities=13% Similarity=0.105 Sum_probs=218.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC-C--C-CEEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP-S--I-EMVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~-~--~-~~v~~~~~g~~a~~~ 107 (411)
..++||..+. .+++ .++.+.+++.+.+... ..| .+..++++.+++++.+.++ . + +++++|+|+++++..
T Consensus 29 ~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 29 HDALNLSQGA--PNFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CCeEEcCCCC--CCCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 4578888874 2222 5788899988877653 223 2346888999999988876 2 2 589999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.. ..+++.|++.+++|.. +.......|..+..++... .+.. -|++.+++.++ .+++++
T Consensus 106 ~~~~l--~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~-~~~~------------~d~~~l~~~l~---~~~~~v 166 (384)
T PRK12414 106 AISAL--VHPGDEVIYFEPSFDS-YAPIVRLQGATPVAIKLSP-EDFR------------VNWDEVAAAIT---PRTRMI 166 (384)
T ss_pred HHHHh--cCCCCEEEEeCCCccc-hHHHHHHcCCEEEEEecCc-cccc------------cCHHHHHhhcC---cccEEE
Confidence 88753 4567889999999875 3333444454444433221 1110 17888988876 245666
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cc-cccC---CCcchhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQ-EYFG---VTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~-~~~~---~~~d~~~~sK~~~-~G~~~g 260 (411)
+++..+|++|.... ++.+++|.++|++|++++|+||+|..+ ..+... .. ...+ ...-+.||||.++ +|+|+|
T Consensus 167 ~i~~p~NPTG~~~s-~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG 245 (384)
T PRK12414 167 IVNTPHNPSATVFS-AADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVG 245 (384)
T ss_pred EEcCCCCCCCcCCC-HHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEE
Confidence 66655666676554 455999999999999999999999876 333211 11 1111 1223558999998 899999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 339 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 339 (411)
|+++++++++.+... ....+++.+.+++.++.++++.-.. .++++.++++.+.+.+.|++. ++.......|+
T Consensus 246 ~~v~~~~l~~~l~~~---~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~~~~~gg~ 318 (384)
T PRK12414 246 YCLAPAELMDEIRKV---HQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS----RFELLPSEGSF 318 (384)
T ss_pred EEecCHHHHHHHHHH---HhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCcce
Confidence 999999998887631 2223566677888877766642111 234455666666666666654 43323344567
Q ss_pred eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 340 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
++|+.+.... ...+.+.+.+.+.++||.+.|+. .+.+|++++.+++++++++++|.+
T Consensus 319 ~~~~~~~~~~----------~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 319 FMLARFRHFS----------DESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred EEEEcccccC----------CCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 8887774210 11122344466778899999973 245899888899999999999874
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=222.06 Aligned_cols=337 Identities=17% Similarity=0.163 Sum_probs=235.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC--C---CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--T---SF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~---~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
...++|..++. ++--+....+.+++.+.+... . .+ .+..++++.+++++....+ .+++|++|+|+++|
T Consensus 89 ~~~i~f~~g~p-~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~a 167 (459)
T COG1167 89 PSVIDFAGGLP-DPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQA 167 (459)
T ss_pred CceecCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHH
Confidence 67789988852 332225666776666666441 1 11 3447788899999985554 57899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++.++++ ...+++.|++.+++|++... +....|..+..++.. ..|. |++++++.++++ ++
T Consensus 168 l~l~~~~--l~~pGd~v~vE~PtY~~~~~-~~~~~g~~~~~vp~d-~~G~--------------~~e~le~~~~~~--~~ 227 (459)
T COG1167 168 LDLLLRL--LLDPGDTVLVEDPTYPGALQ-ALEALGARVIPVPVD-EDGI--------------DPEALEEALAQW--KP 227 (459)
T ss_pred HHHHHHH--hCCCCCEEEEcCCCcHHHHH-HHHHcCCcEEecCCC-CCCC--------------CHHHHHHHHhhc--CC
Confidence 9988885 23467899999999997433 233334433333332 3444 899999999865 79
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc-cC---ccccccCCCcchhhhhhhccCCccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YG---GAQEYFGVTPDLTTLGKIIGGGLPV 259 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g-~~---~~~~~~~~~~d~~~~sK~~~~G~~~ 259 (411)
+++++.|.++|....+.+.+-.++|.++|++||+++|.||.|+.| ..+ .. .+.+..+....+.||||.+..|+|+
T Consensus 228 k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRl 307 (459)
T COG1167 228 KAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRL 307 (459)
T ss_pred cEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccce
Confidence 999999977664444555666999999999999999999999988 433 22 3344444556678999999999999
Q ss_pred ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH--Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 260 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR--LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
||+++++++++.+.. .....+.+.+.+.+.+....+.. +.. +.++..++++.+.+.+.|++.... ...+...
T Consensus 308 G~vv~p~~~~~~~~~---~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~-~~~~~~p 383 (459)
T COG1167 308 GYVVAPPELIEKLLR---LKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPE-LATWTRP 383 (459)
T ss_pred eeeeCCHHHHHHHHH---HHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CeeeecC
Confidence 999999999888873 23445677788887776665551 111 445555555555555555554321 1122334
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEecc-CC--------Ccceeeec-CCCHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQ--------FEAGFTSL-AHSSDDIQHTITAAE 405 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-~~--------~~~~~~~~-~~t~~~i~~~i~~l~ 405 (411)
..|+++|+++.. ..+..++.+.+.++|+.+.+ +. .+.+|+++ ..+++++++++++|.
T Consensus 384 ~gG~flwl~l~~-------------~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~ 450 (459)
T COG1167 384 EGGLFLWLELPE-------------GIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLA 450 (459)
T ss_pred CceEEEEEEcCC-------------CCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 458999999954 23357899999999999998 42 23478865 447899999999999
Q ss_pred HHHHh
Q 015230 406 KVLRQ 410 (411)
Q Consensus 406 ~~~~~ 410 (411)
+++++
T Consensus 451 ~~~~~ 455 (459)
T COG1167 451 ALLRE 455 (459)
T ss_pred HHHHH
Confidence 98875
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=221.89 Aligned_cols=342 Identities=11% Similarity=0.057 Sum_probs=219.3
Q ss_pred CCEEEeccCCcccccc--C-C-CcHHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHhhCC---CCCEEEEeCChH
Q 015230 35 GNEYIDYVGSWGPAII--G-H-ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSGT 102 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~--g-~-~~~~v~~a~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ 102 (411)
++.++++..+ .+. . + .++++.+++.+.++....+.| ..++++.+++++.+.++ .+++|++|+|++
T Consensus 65 ~~~vi~l~~G---dp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~ 141 (462)
T PLN02187 65 NKTILPLGHG---DPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCN 141 (462)
T ss_pred CCCeEECCCC---CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHH
Confidence 5678888777 332 1 3 567889999988886433322 24688889998887654 688999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+++..++... ..+++.|++.+++|+.. .......|..+..++.....++.. |+++++++++. .
T Consensus 142 ~al~~~~~~l--~~pGd~Vlv~~P~y~~y-~~~~~~~g~~~~~~~l~~~~~~~~------------d~~~l~~~~~~--~ 204 (462)
T PLN02187 142 QGIEIVFESL--ARPNANILLPRPGFPHY-DARAAYSGLEVRKFDLLPEKEWEI------------DLEGIEAIADE--N 204 (462)
T ss_pred HHHHHHHHHh--cCCCCEEEEeCCCCccH-HHHHHHcCCEEEEEeCccccCCcc------------CHHHHHHhcCC--C
Confidence 9999999843 34668899999999864 333444555554443321111110 88999887763 3
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-ccccc-CC--Ccchhhhhhhcc-CC
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-GV--TPDLTTLGKIIG-GG 256 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~~-~~--~~d~~~~sK~~~-~G 256 (411)
..++++++|.| ++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+..+ ....+ +. ..-+.||||.|+ +|
T Consensus 205 ~~~v~i~nP~N-PTG~v~s-~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pG 282 (462)
T PLN02187 205 TVAMVVINPNN-PCGNVYS-HDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPG 282 (462)
T ss_pred cEEEEEeCCCC-CCCCccC-HHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCcc
Confidence 45677777754 4554443 445999999999999999999999987 433221 11111 11 122458999988 79
Q ss_pred ccccccccc-HH-H---HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-c--CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 257 LPVGAYGGR-RD-I---MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 257 ~~~g~~~~~-~~-~---~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+|+||++++ ++ . ++.+......+ ..+.+.+.++++++.++++... . ++.++.++++.+++.+.|+++
T Consensus 283 lRiG~~v~~~p~~~~~~~~~~~~~~~~~-~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~---- 357 (462)
T PLN02187 283 WKIGWIALNDPEGVFETTKVLQSIKQNL-DVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDI---- 357 (462)
T ss_pred ceeEEEEecCchhHHHHHHHHHHHHHhc-cccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC----
Confidence 999999873 32 2 23333111111 1122446788888888775311 1 344555666666666666653
Q ss_pred CCce-E-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHH
Q 015230 329 GHAI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTIT 402 (411)
Q Consensus 329 ~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~ 402 (411)
+... . ....|+++|+.+...... +..++.+.+.+.+.++||.+.|+. .+.+|+++...+++++++++
T Consensus 358 ~~~~~~~~P~gg~fl~~~l~~~~~~-------~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~ 430 (462)
T PLN02187 358 PCVVCPKKPESCTYLLTKLELSLMD-------NIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALE 430 (462)
T ss_pred CCCcCCCCCCEeEEEEeecChhhCC-------CCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHH
Confidence 4322 1 234578888877421100 000122344566688899999974 34689999999999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|.+++++
T Consensus 431 rL~~~l~~ 438 (462)
T PLN02187 431 RLKGFCTR 438 (462)
T ss_pred HHHHHHHH
Confidence 99998864
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=215.34 Aligned_cols=319 Identities=17% Similarity=0.171 Sum_probs=222.5
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
.++|+.+|. +|+| .+|.+++++.+.++.. .-|++....++.+.+++.++ ..++|+.++|++|.+...+++.
T Consensus 23 ~~i~LssNe--nP~g-p~~~~~~~~~~~~~~~--~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~-- 95 (356)
T COG0079 23 GIIKLSSNE--NPYG-PPPKVIEAIRAALDKL--NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF-- 95 (356)
T ss_pred cceeecCCC--CCCC-CCHHHHHHHHHHHHhh--ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh--
Confidence 689999997 7888 5688999998888753 34566667888888888886 4689999999999999999852
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
..+++.|++..++|.. +...+...|..+...+... ... |++.+.+.++. +...+++++|+|+
T Consensus 96 ~~~gd~vl~~~Ptf~~-Y~~~a~~~g~~~~~v~~~~-~~~--------------d~~~~~~~~~~--~~~lv~i~nPNNP 157 (356)
T COG0079 96 VEPGDTVLIPEPTFSM-YEIAAQLAGAEVVKVPLKE-FRL--------------DLDAILAAIRD--KTKLVFLCNPNNP 157 (356)
T ss_pred hcCCCEEEEcCCChHH-HHHHHHhcCCeEEEecccc-ccc--------------CHHHHHHhhhc--CCCEEEEeCCCCC
Confidence 3345789999999974 4444555555555433322 111 78888887773 2344566666665
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc---hhhhhhhcc-CCcccccccccHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRDIM 269 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d---~~~~sK~~~-~G~~~g~~~~~~~~~ 269 (411)
+ |.+.+.++ ++++.+.|.+ +.+||+||+|.+| ... ........++ +-||||+|+ +|+|+||++++++++
T Consensus 158 T-G~~~~~~~-l~~l~~~~~~-~~~vVvDEAY~eF~~~~---~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i 231 (356)
T COG0079 158 T-GTLLPREE-LRALLEALPE-GGLVVIDEAYIEFSPES---SLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELI 231 (356)
T ss_pred C-CCCCCHHH-HHHHHHhCCC-CcEEEEeCchhhcCCch---hhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHH
Confidence 5 55554232 7777777777 9999999999988 411 1111121222 349999999 899999999999999
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecC
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 348 (411)
+.+.+. -.+|+.+.++++++.++++.-+. ++.++.+.+...++.+.|+++ +........++|+++++..
T Consensus 232 ~~l~~v-----r~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~----~~~~v~pS~aNFvlv~~~~- 301 (356)
T COG0079 232 AALNKV-----RPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKAL----GLFGVFPSQANFVLVRVPD- 301 (356)
T ss_pred HHHHHh-----cCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC----CCCeecCCCCcEEEEECCC-
Confidence 999853 24788899999999998764322 444455555555555555554 4221223348888887742
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.. +..+.+.|.++||+++.... +++|++.. |+++.++++++|+++++.
T Consensus 302 ------------~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvg-t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 302 ------------AE-AAALAEALLKKGILVRDCSSVGLLPGYLRITVG-TPEENDRLLAALREVLKG 354 (356)
T ss_pred ------------cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 22 36899999999999998853 35777755 666679999999998764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=222.31 Aligned_cols=342 Identities=15% Similarity=0.102 Sum_probs=218.4
Q ss_pred CCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
|+.++++..+.......+ .++++.+++.++++... .|. +..++++.+++++.+.++ .+++|++|+|+++|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 788999998832111234 57889999999887632 232 346778888888877654 578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.. ..+++.|++..++|+.. .......|..+..++.....++.. |++++++.++. +..+
T Consensus 131 ~l~~~~l--~~~Gd~Vlv~~P~y~~y-~~~~~~~g~~~~~~~~~~~~~~~~------------d~~~l~~~~~~--~~~~ 193 (430)
T PLN00145 131 EIIMSVL--AQPGANILLPRPGYPLY-EARAVFSGLEVRHFDLLPERGWEV------------DLEGVEALADE--NTVA 193 (430)
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccH-HHHHHHcCCEEEEeeCCcccCCcC------------CHHHHHHHhCc--CceE
Confidence 9998853 24567899999998863 333444455444433221112111 88999888763 3455
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccC---CCcchhhhhhhcc-CCccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---VTPDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~---~~~d~~~~sK~~~-~G~~~ 259 (411)
+++++| +|++|.+.+ .+.+++|.++|++||++||+||+|.+| ..+.. .....++ ...-+.||||.++ +|||+
T Consensus 194 i~i~~P-~NPtG~v~~-~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~Rl 271 (430)
T PLN00145 194 MVIINP-NNPCGSVYS-YEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRL 271 (430)
T ss_pred EEEeCC-CCCCCCCCC-HHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeE
Confidence 666666 455665544 444999999999999999999999877 43321 1111111 1223458999977 79999
Q ss_pred ccccc--cHHHHH------HhcCCCCcccccCCCCCHHHHHHHHHHHHHH-hc--CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 260 GAYGG--RRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 260 g~~~~--~~~~~~------~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
||+++ ++.+++ .+.. ........+.+.+.++.++++.- ++ ++.++.++++.+.+.+.|+++
T Consensus 272 G~iv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---- 343 (430)
T PLN00145 272 GWIATCDPNGILKETKVVDSIRN----YLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEI---- 343 (430)
T ss_pred EEEEEecchhhhhhhHHHHHHHH----HhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 99976 343332 2221 11112344677888877777531 11 344555666666666665543
Q ss_pred CCce-E-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHH
Q 015230 329 GHAI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTIT 402 (411)
Q Consensus 329 ~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~ 402 (411)
+... . ....|+++|+.+....... ..++.+.+.+.+.++||++.|+. .+.+|+++..+.++++++++
T Consensus 344 ~g~~~~~~P~ga~y~~v~l~~~~~~~-------~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~ 416 (430)
T PLN00145 344 KCITCPHKPEGSMFVMVKLDLSCLSG-------IKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLE 416 (430)
T ss_pred CCCCCCcCCCeeeEEEeccChhhcCC-------CCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHH
Confidence 3222 1 2456888888874211000 00122334456667799999973 34689998889999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|.+++.+
T Consensus 417 rl~~~~~~ 424 (430)
T PLN00145 417 RLKSFCLR 424 (430)
T ss_pred HHHHHHHH
Confidence 99998764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=215.10 Aligned_cols=328 Identities=13% Similarity=0.086 Sum_probs=212.4
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVLR 110 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~al~ 110 (411)
++||.++. +.-..++++.+++.+.......|. +..++++.+++++.+.++ .++ +|++|+|+++++..++.
T Consensus 2 ~~~~~~g~---p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~ 78 (350)
T TIGR03537 2 LFDFGTGD---PKEPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPL 78 (350)
T ss_pred eEeccCCC---CCCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHH
Confidence 57888773 321157889999888765532332 345788899999887754 466 89999999999998876
Q ss_pred HHHhccC--CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 111 LARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 111 ~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
.. .-.+ ++.|++..++|..... .....|..+..++.....++.. |++++++.++. ++++++
T Consensus 79 ~~-~~~g~~~d~Vl~~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~~~------------d~~~l~~~~~~---~~~~i~ 141 (350)
T TIGR03537 79 VF-IDPEEDRRRVIFGTPGYPVYER-GALFAGGEPTAVKLKKEDGFLL------------RLEKVEKSILE---ETKIVW 141 (350)
T ss_pred HH-cCCCCCCceEEEcCCCCcchHH-HHHhcCCEEEEcccCcccCCcc------------CHHHHHHhhhh---ccEEEE
Confidence 43 1111 2589999999986443 3444555444443321222211 88999888763 456666
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC--CCcchhhhhhhcc-CCcccccccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--VTPDLTTLGKIIG-GGLPVGAYGG 264 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~--~~~d~~~~sK~~~-~G~~~g~~~~ 264 (411)
+++.+|++|...+ .+.+++|.++|++||+++|+||+|..+ ..+........+ ...-+.||||.++ +|+|+||+++
T Consensus 142 i~~p~NPtG~~~~-~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~ 220 (350)
T TIGR03537 142 INYPHNPTGATAP-RSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAG 220 (350)
T ss_pred EeCCCCCcCcccC-HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeec
Confidence 6666666776554 455999999999999999999999865 222211111111 1122458999997 7999999999
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+..... ..+.+.+.+++.++.+++..... ++.+++++++.+.+.+.|++. +........|+++|+
T Consensus 221 ~~~~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~----g~~~~~~~g~~~~~~ 293 (350)
T TIGR03537 221 DEKLISFLRKLRA---NFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV----GLEYLYPDATFYLWV 293 (350)
T ss_pred CHHHHHHHHHHHH---hhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC----CCcccCCCeEEEEEE
Confidence 9988887763221 12334455566666555431000 233444555555555555443 433233445778888
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
++... ....++.+.|.++||.+.++. .+.+|++++.+++++++++++|.+
T Consensus 294 ~~~~~-------------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 294 KVPSG-------------IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred ECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 87431 123688999999999999863 245899877889999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=218.63 Aligned_cols=321 Identities=13% Similarity=0.122 Sum_probs=213.0
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
+++.++|+..|. ++++ .+|.+++++.+.+..... |+..-..++.+.+++.++ .+++|++|+|+++++..+++..
T Consensus 27 ~~~~~i~l~~ne--n~~~-~~~~v~~a~~~~~~~~~~--Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l 101 (366)
T PRK01533 27 GDHSFVKLASNE--NPFG-CSPRVLDELQKSWLDHAL--YPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAV 101 (366)
T ss_pred CCCceEEeCCCC--CCCC-CCHHHHHHHHHHHHhcCc--CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence 456789998885 5555 778899999887665322 343334556666666666 7899999999999999988743
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++.+++|..... .....|..+..++.. ..++ |++++++.++. ++++++++..
T Consensus 102 --~~~gd~vlv~~P~y~~~~~-~~~~~g~~v~~v~~~-~~~~--------------d~~~l~~~~~~---~~~~v~i~~P 160 (366)
T PRK01533 102 --LKAGDNIVTAGATFPQYRH-HAIIEGCEVKEVALN-NGVY--------------DLDEISSVVDN---DTKIVWICNP 160 (366)
T ss_pred --cCCCCEEEEcCCcHHHHHH-HHHHcCCEEEEeecC-CCCc--------------CHHHHHHHhCc---CCcEEEEeCC
Confidence 3456789999999876443 334445444443321 1111 88999888763 3444444444
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Cccccc---cCCCcchhhhhhhcc-CCcccccccccH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYGGRR 266 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~---~~~~~d~~~~sK~~~-~G~~~g~~~~~~ 266 (411)
+|++|.+.+ .+.+++|.++|++++ ++|+||+|.+| ..+. ...... .+...-+.||||.++ +|+|+||+++++
T Consensus 161 ~NPTG~~~~-~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~ 238 (366)
T PRK01533 161 NNPTGTYVN-DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE 238 (366)
T ss_pred CCCCCCCcC-HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH
Confidence 556676665 344888888888876 57779999877 3321 111111 112223459999999 899999999999
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
++++.+.... .+++.+.+++.++.++++ +.+..++.++..+..++++.+.....++.. ....|+|+|+.+.
T Consensus 239 ~~~~~l~~~~-----~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~-~~~~~nf~~~~~~ 309 (366)
T PRK01533 239 ELIEKLNVVR-----LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENEIPF-YQSQTNFIFLPVE 309 (366)
T ss_pred HHHHHHHHhc-----CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-CCCcCcEEEEeCC
Confidence 9998886421 257788899999888874 223333333333333444444333334322 2346889999762
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+ ..++.+.|.++||.|++. .+.+|++.. +.++.++++++|++++.
T Consensus 310 ~----------------~~~~~~~l~~~GI~Vr~~-~~~iRis~~-~~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 310 N----------------GGEIYEACAHAGFIIRPF-PNGVRITVG-TREQNEGVISVLQQHFE 354 (366)
T ss_pred C----------------HHHHHHHHHHCCcEEccC-CCceEEeCC-CHHHHHHHHHHHHHHHH
Confidence 1 257889999999999985 356888844 77999999999998765
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=217.20 Aligned_cols=333 Identities=16% Similarity=0.107 Sum_probs=218.7
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~ 107 (411)
..++|+..+ .+.-..++.+++++.+.++.. ..| .+..++++++++++.+.++ .++ +|++|+|+++|+..
T Consensus 28 ~~~i~l~~~---~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIG---QPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCC---CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 467898888 332124678899999988763 223 2357788899999876654 466 89999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.. ...++.|++..++|++. .......|..+..++.. ..++.. |.+++++.++. +++++
T Consensus 105 ~~~~l--~~~gd~Vl~~~p~y~~~-~~~~~~~g~~~~~~~~~-~~~~~~------------~~~~l~~~~~~---~~~~i 165 (387)
T PRK07683 105 AFRTI--LEPGTEVILPAPIYPGY-EPIIRLCGAKPVFIDTR-STGFRL------------TAEALENAITE---KTRCV 165 (387)
T ss_pred HHHHh--CCCCCEEEEcCCCccch-HHHHHHcCCEEEEeecC-cccCCC------------CHHHHHHhcCc---CceEE
Confidence 88753 34567899988888864 33344445544443322 112211 67888887763 34555
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc----CCCcchhhhhhhcc-CCccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVGA 261 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~----~~~~d~~~~sK~~~-~G~~~g~ 261 (411)
++..++|++|...+ .+.+++|.++|+++|+++|+||+|..+ ..+.......+ +...-+.||||.++ +|+|+||
T Consensus 166 ~i~~p~NPtG~~~s-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~ 244 (387)
T PRK07683 166 VLPYPSNPTGVTLS-KEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGF 244 (387)
T ss_pred EEeCCCCCCCcCCC-HHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEE
Confidence 55555556676554 444999999999999999999999977 33321111111 11222458999999 8999999
Q ss_pred ccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 015230 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 339 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 339 (411)
+++++++++.+.... .......+.+++.++.+.++.... ++.+++++++.+++.+.|++. +........|+
T Consensus 245 i~~~~~l~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~ 317 (387)
T PRK07683 245 LFAPSYLAKHILKVH---QYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM----GLDVEKPTGAF 317 (387)
T ss_pred EEcCHHHHHHHHHHH---HhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCcccCCCeeE
Confidence 999999888876321 122234456777777766642111 344555666666666666553 43333344567
Q ss_pred eEEEEEecCCCCCcchhcccchHHHHHHHH-HHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 340 MFGFFFTEGPVYNFEDAKKSETTKFARFYR-GMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++|..+..... ....+.+ .+.++||.+.|+. .+.+|+++..+++++.+++++|.+++.+
T Consensus 318 ~~~~~~~~~~~------------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 318 YLFPSIGHFTM------------SSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred EEEEecccCCC------------CHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 77776643111 1134554 4677899999973 2468999888999999999999988754
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=219.61 Aligned_cols=331 Identities=14% Similarity=0.110 Sum_probs=220.3
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~a~~ 106 (411)
++.++||..+. ..++ .++.+.+++.+.++.. ..| .+..++++++++++.+.++ .+ +++++|+|+++|+.
T Consensus 29 ~~~~i~l~~g~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~ 105 (386)
T PRK09082 29 EHGAINLSQGF--PDFD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALF 105 (386)
T ss_pred hCCEEEecCCC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHH
Confidence 35678988873 2222 5778999988887753 222 2346788999999988765 23 37999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++... ..+++.|++.+++|... .......|..+..++... .+.. -|++++++.++ +++++
T Consensus 106 ~~~~~~--~~~gd~Vli~~p~y~~~-~~~~~~~g~~~~~~~~~~-~~~~------------~d~~~l~~~~~---~~~~~ 166 (386)
T PRK09082 106 AAILAL--VRPGDEVIVFDPSYDSY-APAIELAGGRAVRVALQP-PDFR------------VDWQRFAAAIS---PRTRL 166 (386)
T ss_pred HHHHHH--cCCCCEEEEeCCCchhh-HHHHHHcCCEEEEEecCc-cccc------------CCHHHHHHhcC---ccceE
Confidence 998753 34667888888888764 333444455444433321 1111 17888988876 24566
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc--CccccccC---CCcchhhhhhhcc-CCccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYFG---VTPDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~--~~~~~~~~---~~~d~~~~sK~~~-~G~~~ 259 (411)
++++..+|++|...+ .+.+++|.++|++|++++|+||+|.++ ..+. .......+ ...-+.||||.++ +|+|+
T Consensus 167 v~l~~p~NPtG~~~~-~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 245 (386)
T PRK09082 167 IILNTPHNPSGTVWS-AADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKV 245 (386)
T ss_pred EEEeCCCCCCCcCCC-HHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhh
Confidence 666555566666544 344999999999999999999999877 3321 11111112 2223458999997 79999
Q ss_pred ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 260 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
||+++++++++.+.... ....++.+.+++.++.+.++...+ +++++.++++.+++.+.|++. ++.......
T Consensus 246 G~iv~~~~l~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~g 318 (386)
T PRK09082 246 GYCVAPAALSAEFRKVH---QYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS----RFKLLPCEG 318 (386)
T ss_pred hhhhCCHHHHHHHHHHH---hhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCe
Confidence 99999999988876421 223556677777777666642111 344555666777776666653 333333455
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
|+++|+++.+.+ ..+..++++.| .++||.+.|+. .+.+|+++..+++++++++++|++
T Consensus 319 ~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 319 TYFQLVDYSAIS-----------DLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred eEEEEEeccccC-----------CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 778898885310 11225677765 67799998874 135899888899999999999875
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=217.37 Aligned_cols=341 Identities=14% Similarity=0.064 Sum_probs=222.7
Q ss_pred cCCCEEEeccCCcccccc---CC-CcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCC
Q 015230 33 IDGNEYIDYVGSWGPAII---GH-ADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNS 100 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~---g~-~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~ 100 (411)
..|+.++++..+ .|- .+ .++.+++++.+++... ..|+ +..++++.+++++.+..+ .+++|++|+|
T Consensus 28 ~~~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 104 (409)
T PLN02656 28 ENGKRVISLGMG---DPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSG 104 (409)
T ss_pred ccCCeeeecCCC---CCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCC
Confidence 467889999888 443 23 6788999999888763 2332 336778888988887654 5789999999
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+++|+..++... ..+++.|++.+++|.. +.......|..+..++.....++. -|++++++.++.
T Consensus 105 ~~~al~~~~~~l--~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~i~~~~~~~~~------------~d~~~l~~~~~~- 168 (409)
T PLN02656 105 CTQAIDVALSML--ARPGANILLPRPGFPI-YELCAAFRHLEVRYVDLLPEKGWE------------VDLDAVEALADQ- 168 (409)
T ss_pred hHHHHHHHHHHH--hCCCCeEEEeCCCCCc-HHHHHHHcCCEEEEEeCCCcCCCC------------CCHHHHHHHhcc-
Confidence 999999988753 3466789998888864 333344445544444332111211 178889888763
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc---cccCCCcchhhhhhhcc-
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EYFGVTPDLTTLGKIIG- 254 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~---~~~~~~~d~~~~sK~~~- 254 (411)
+...+++++|. |++|.+.+ .+.+++|.++|++|+++||+||+|.+| ..+.. ... +.......+.||||.|+
T Consensus 169 -~~~~v~l~~P~-NPtG~~~s-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 245 (409)
T PLN02656 169 -NTVALVIINPG-NPCGNVYS-YQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIV 245 (409)
T ss_pred -CceEEEEECCC-CCCCCCCC-HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccC
Confidence 34556666664 45555543 444999999999999999999999987 44321 111 11111233568999977
Q ss_pred CCccccccccc--------HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH
Q 015230 255 GGLPVGAYGGR--------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 255 ~G~~~g~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~ 323 (411)
+|+|+||++++ +++++.+..... ...+.+.+++.++.++++...+ ++.++.++++.+.+.+.|++
T Consensus 246 pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~ 321 (409)
T PLN02656 246 PGWRLGWFVTTDPSGSFRDPKIVERIKKYFD----ILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE 321 (409)
T ss_pred cceeEEEEEEeCcccccccHHHHHHHHHHHh----hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 79999999873 567777653111 1224567888888877752111 33445555555556555554
Q ss_pred HHHhcCCce--EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHH
Q 015230 324 AGKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDI 397 (411)
Q Consensus 324 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i 397 (411)
+ +... .....|+++|+++....... .....+.+.+.+.++||.+.|+. .+.+|+++..+++++
T Consensus 322 ~----~~~~~~~~p~gg~~~w~~l~~~~~~~-------~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l 390 (409)
T PLN02656 322 I----PCITCPHKPEGSMAVMVKLNLSLLED-------ISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSL 390 (409)
T ss_pred C----CCCcCCcCCCeEEEEEEecchhhcCC-------CCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHH
Confidence 3 3211 12345788999874211000 00122345677788999999984 246899988899999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++..
T Consensus 391 ~eal~rl~~~~~~ 403 (409)
T PLN02656 391 EEALGRIKSFYLR 403 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=220.26 Aligned_cols=343 Identities=14% Similarity=0.031 Sum_probs=216.6
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
+|+.++|+..+.... ..+ .++.+.+++.+.+... ..| .+..++++.+++++.+.++ .+++|++|+|+++|+
T Consensus 28 ~~~~~i~l~~g~p~~-~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 106 (398)
T PRK08363 28 KGIKVIRLNIGDPVK-FDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEAL 106 (398)
T ss_pred cCCCeEEEeCCCCCc-CCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 567899999884211 244 6788999998888653 223 2346777888888876654 578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..++... ..+++.|++.+++|......+. ..|..+..+...+..++. .|++++++.+.. +++
T Consensus 107 ~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~v~~~~~~~~~~~------------~d~~~l~~~~~~---~~~ 168 (398)
T PRK08363 107 QLIFGAL--LDPGDEILIPGPSYPPYTGLVK-FYGGVPVEYRTIEEEGWQ------------PDIDDIRKKITE---KTK 168 (398)
T ss_pred HHHHHHh--CCCCCEEEEcCCCCcchHHHHH-HcCCEEEEeccccccCCc------------CCHHHHHhhCCc---ceE
Confidence 9998743 4567889999998886544333 333322222111111211 178888887752 455
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC---CCcchhhhhhhcc-CCcccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG---VTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~---~~~d~~~~sK~~~-~G~~~g 260 (411)
++++...+|++|...+ .+.+++|.++|++||+++|+||+|.++ ..+......... ...-+.||||.++ +|+|+|
T Consensus 169 ~v~l~~p~NPtG~~~~-~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG 247 (398)
T PRK08363 169 AIAVINPNNPTGALYE-KKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLG 247 (398)
T ss_pred EEEEECCCCCCCcCcC-HHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEE
Confidence 5555444555666554 344999999999999999999999876 333221111111 1122458999976 799999
Q ss_pred cccc--cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEe
Q 015230 261 AYGG--RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGG 335 (411)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 335 (411)
|+++ ++++++.+...........++.+.+++.++.++++...+ ++.+++++++.+++.+.|+++ +... ...
T Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~p 323 (398)
T PRK08363 248 YIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEI----PGISTTKP 323 (398)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcC----CCCEecCC
Confidence 9976 666655544211111112356677788877777642111 344555666666666666543 3222 223
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
..|+++|+.+..... ....+.+.+.|.++||.+.|+. .+.+|++++.+++++++++++|+++++
T Consensus 324 ~g~~~~~~~l~~~~~----------~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~ 393 (398)
T PRK08363 324 QGAFYIFPRIEEGPW----------KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMR 393 (398)
T ss_pred CeEEEEEEEeccCCC----------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 446677766643100 0112344566788999998874 235899988899999999999998876
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 394 ~ 394 (398)
T PRK08363 394 E 394 (398)
T ss_pred H
Confidence 4
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=216.67 Aligned_cols=330 Identities=13% Similarity=0.069 Sum_probs=218.6
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--C---CCCCHHHHHHHHHHHhhCC---C-CCEEEEeCChHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F---GAPCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACMG 107 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~---~~~~~~~~~l~~~l~~~~~---~-~~~v~~~~~g~~a~~~ 107 (411)
.++++..+. .++. .++.+++++.+.+..... | .+..++++.+++++++.++ . .+++++|+|+++++..
T Consensus 28 ~~~~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~ 104 (389)
T PRK05957 28 GTISLGQGV--VSYP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104 (389)
T ss_pred CeEEccCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence 457777763 2222 677899999888765322 2 2346788999999988776 2 6689999999999988
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
++... +.+++.|++.++.|... .......|..+..++.....++ |++++++.++ ++++++
T Consensus 105 ~~~~~--~~~gd~Vlv~~P~y~~~-~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~---~~~klv 164 (389)
T PRK05957 105 AILAI--TDPGDEIILNTPYYFNH-EMAITMAGCQPILVPTDDNYQL--------------QPEAIEQAIT---PKTRAI 164 (389)
T ss_pred HHHHh--cCCCCEEEEeCCCCcCH-HHHHHhcCCEEEEeecCCCCCc--------------CHHHHHHhcC---cCceEE
Confidence 88643 35667888888888654 3333444544444332211111 8899998876 345666
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cc-c---cccCCCcchhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-Q---EYFGVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~-~---~~~~~~~d~~~~sK~~~-~G~~~g 260 (411)
++...+|++|...+.. .+++|.++|++||++||+||+|.++ ..+.. .. . +.......+.||||.++ +|+|+|
T Consensus 165 ~~~~p~NPtG~~~~~~-~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG 243 (389)
T PRK05957 165 VTISPNNPTGVVYPEA-LLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIG 243 (389)
T ss_pred EEeCCCCCCCcCcCHH-HHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeE
Confidence 6665566677766544 4999999999999999999999877 33211 11 1 11112233568999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-c-CChHHHHHHHHHHHHHHHHHHHHhcCC--ceEEee
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E-PGTYEYLNKITGELTQGIIDAGKKAGH--AICGGY 336 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ 336 (411)
|+++++++++.+.... .....+.+.+++.++..+++.-. . ++.++.++++.+++.+.|+++ +. ......
T Consensus 244 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~ 316 (389)
T PRK05957 244 YMVIPIHLLEAIKKIQ---DTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQL----QDRCTLHPAN 316 (389)
T ss_pred EEecCHHHHHHHHHHH---hhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhc----CCCccccCCC
Confidence 9999999998887422 12233455677777766664211 1 334455666666666666553 22 222234
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecC-CCHHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVL 408 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~-~t~~~i~~~i~~l~~~~ 408 (411)
.|+++|+++... .+..++++.|. ++||.+.|+. .+.+|+++. .+++++++++++|.+.+
T Consensus 317 gg~~~~~~~~~~-------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 317 GAFYCFLKVNTD-------------LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGL 383 (389)
T ss_pred eeEEEEEeCCCC-------------CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 578888887421 12367888876 5799999973 235899875 58899999999999887
Q ss_pred Hh
Q 015230 409 RQ 410 (411)
Q Consensus 409 ~~ 410 (411)
+.
T Consensus 384 ~~ 385 (389)
T PRK05957 384 KT 385 (389)
T ss_pred Hh
Confidence 65
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=217.69 Aligned_cols=323 Identities=15% Similarity=0.157 Sum_probs=213.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
+++.++||.++. +++| .+|.+++++.+.+.....| ++....++.+.+++.++ .+++|++|+|+++++..++...
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y--~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l 104 (367)
T PRK02731 30 GIADIIKLASNE--NPLG-PSPKAIEAIRAAADELHRY--PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAY 104 (367)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh
Confidence 567899999985 4666 5788999998887653333 32223567777777776 6789999999999988877642
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++.+++|... .......|..+..++.. ..+. |++++++.++ +++++++++.+
T Consensus 105 --~~~gd~vl~~~p~y~~~-~~~~~~~g~~~~~~~~~-~~~~--------------~~~~l~~~~~---~~~~~v~l~~p 163 (367)
T PRK02731 105 --LGPGDEVIYSEHGFAVY-PIAAQAVGAKPVEVPAK-DYGH--------------DLDAMLAAVT---PRTRLVFIANP 163 (367)
T ss_pred --cCCCCEEEEecCCHHHH-HHHHHHcCCeEEEeccc-CCCC--------------CHHHHHHHhC---CCCcEEEEeCC
Confidence 34567888888888643 22233344444332221 1111 7899988886 35566666666
Q ss_pred CCCCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccc-cccc-CccccccCCCcc---hhhhhhhcc-CCcccccccc
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGG 264 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~-~~~~~~~~~~~d---~~~~sK~~~-~G~~~g~~~~ 264 (411)
+|++|.+.+ .+++.++|+. +++++|+||+|.++ ..+. .......+..++ +.||||.++ +|+|+||+++
T Consensus 164 ~nptG~~~~----~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~ 239 (367)
T PRK02731 164 NNPTGTYLP----AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIA 239 (367)
T ss_pred CCCCCcCCC----HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeC
Confidence 677787777 5555555554 49999999999876 3331 112222222223 338999998 7999999999
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+.... .++..+.+++.++.++++.... ++.+++++++.+++.+.|++. +.... .+.|+++|+
T Consensus 240 ~~~~~~~l~~~~-----~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~-~~~g~~~~i 309 (367)
T PRK02731 240 PPEIIDALNRVR-----QPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL----GLEYI-PSVGNFILV 309 (367)
T ss_pred CHHHHHHHHHcc-----CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCccC-CCCceEEEE
Confidence 999988887432 2455677888887777642111 334444555555555555543 43222 345889999
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.. ..+..++.+.|.++||.+.++.. +.+|+++. +.++++++++.|+++++.
T Consensus 310 ~~~~-------------~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 310 DFDD-------------GKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKEFLAA 366 (367)
T ss_pred ECCC-------------CCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 8732 11236789999999999998742 45888876 678999999999988753
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=218.23 Aligned_cols=334 Identities=18% Similarity=0.172 Sum_probs=218.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~ 107 (411)
...+||..+.. ..+ .++.+.+++.+.+... ..|. +..++++.+++++.+.++ .++ +|++|+|+++++..
T Consensus 26 ~~~i~l~~g~p--~~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 102 (387)
T PRK08912 26 HGAINLGQGFP--DDP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAA 102 (387)
T ss_pred CCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHH
Confidence 46789888842 222 4678888888877653 2232 346788899999887654 466 89999999999988
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC-CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
++... ..+++.|++.+++|+.. .......|..+..++... ..++ |++++++.+.. ++++
T Consensus 103 ~~~~~--~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~l~~~~~~---~~~~ 162 (387)
T PRK08912 103 ALLAL--VEPGDEVVLFQPLYDAY-LPLIRRAGGVPRLVRLEPPHWRL--------------PRAALAAAFSP---RTKA 162 (387)
T ss_pred HHHHh--cCCCCEEEEeCCCchhh-HHHHHHcCCEEEEEecCcccCcC--------------CHHHHHHHhCc---cceE
Confidence 88742 34567899999888754 334444455444433321 1111 78888888762 4455
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccccccC---CCcchhhhhhhcc-CCccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFG---VTPDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~~~~~---~~~d~~~~sK~~~-~G~~~ 259 (411)
++++..+|++|...+ .+.+++|.++|++|++++|+||+|.++ ..+.. ......+ ...-+.||||.++ +|+|+
T Consensus 163 v~l~~p~NPtG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi 241 (387)
T PRK08912 163 VLLNNPLNPAGKVFP-REELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKV 241 (387)
T ss_pred EEEeCCCCCcCcccC-HHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCcee
Confidence 555544555665554 344999999999999999999999877 33311 1111112 1223458999999 89999
Q ss_pred ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 260 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
||+++++++++.+.... ....++.++..+.++.+++....+ ++++++++++.+++.+.|++. ++.......
T Consensus 242 G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~g 314 (387)
T PRK08912 242 GFVCAAPPLLRVLAKAH---QFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI----GFPVLPSQG 314 (387)
T ss_pred EEEecCHHHHHHHHHHH---hhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCc
Confidence 99999999888876321 122345566666666555531111 345566666666666666654 332223345
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
|+++|+++..... ..+..++++.|. ++||.+.|+. .+.+|++++.+++.+++++++|.+++
T Consensus 315 ~~~l~~~l~~~~~----------~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 315 TYFLTVDLAPLGL----------AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAAR 384 (387)
T ss_pred ceEEEecccccCC----------CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 7788888853110 012256777765 5799999863 24589998888999999999999987
Q ss_pred Hh
Q 015230 409 RQ 410 (411)
Q Consensus 409 ~~ 410 (411)
++
T Consensus 385 ~~ 386 (387)
T PRK08912 385 RR 386 (387)
T ss_pred hc
Confidence 64
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=215.62 Aligned_cols=321 Identities=15% Similarity=0.119 Sum_probs=206.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
.+..++||..|. ++++ .+|.+.+++.+.++....| +..-...+.+.+++.++ .+++|++|+|+++++..+++..
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y--~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~ 102 (357)
T PRK14809 28 DPDDLVKLSSNE--NPHG-PSPAAVEAIREAAERVHSY--PKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAM 102 (357)
T ss_pred CccceeEecCCC--CCCC-CCHHHHHHHHHHHhhhhcC--CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence 456799999884 4444 6778889988877653233 33224456666666666 7899999999999999988742
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++.+++|... .......|.++..++.+...++. .+.+++++... ++++++++..
T Consensus 103 --~~~gd~V~v~~P~y~~~-~~~~~~~g~~~~~~~l~~~~~~~------------~~~~~~~~~~~----~~k~i~l~~p 163 (357)
T PRK14809 103 --LDPGDTVLVPDPGFAYY-GMSARYHHGEVREYPVSKADDFE------------QTADTVLDAYD----GERIVYLTSP 163 (357)
T ss_pred --cCCCCEEEEeCCChHHH-HHHHHHcCCeEEEEecccCcCCC------------cCHHHHHHhhc----CCcEEEEeCC
Confidence 34567899999988633 33344445555444432222221 15666655432 3445555555
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccccCCCcchhhhhhhcc-CCcccccccccHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 269 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~ 269 (411)
+|++|...+. +.+++|+++|++ +++||+||+|.+| ..+... ..+..+....+.||||.++ +|+|+||++++++++
T Consensus 164 ~NPTG~~~s~-~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~ 241 (357)
T PRK14809 164 HNPTGSEIPL-DEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWA 241 (357)
T ss_pred CCCCCcCCCH-HHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHH
Confidence 5666766653 337777777764 7899999999987 433211 1111222334569999998 899999999999998
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
+.+... ..++..+.+++.++.++++ +++..++.++..+..++.+.+....... ...|+++|+++.+
T Consensus 242 ~~~~~~-----~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~----~~~g~f~~~~~~~-- 307 (357)
T PRK14809 242 DAYARV-----NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAPTW----ESAGNFVLAEVGD-- 307 (357)
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCccC----CCCCCEEEEECCC--
Confidence 888742 2356678888888777764 2222333333333333333333222211 3568899987621
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
..++.+.|.++||.+.++.. +.+|+++. +.+++++++++|+++++
T Consensus 308 --------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 308 --------------ASAVAEAAQERGVIVRDCTSFGLPECIRITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred --------------HHHHHHHHHHCCEEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence 25788889999999999752 35888865 57899999999999875
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=197.96 Aligned_cols=327 Identities=17% Similarity=0.204 Sum_probs=242.8
Q ss_pred CEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCC------CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~ 107 (411)
+++-=+.|| .|+|. .||+|++|+.+.+++ +.+. .+.+....+|.+.|+++.+ .+..++.+|+--|++.
T Consensus 171 k~VtVWCSN---DYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq-K~aALlFsSCfVANDs 246 (570)
T KOG1360|consen 171 KKVTVWCSN---DYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ-KEAALLFSSCFVANDS 246 (570)
T ss_pred CceEEEecC---ccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc-Ccceeeeeeeeeccch
Confidence 456666777 89999 899999999999999 3333 2446777888888888884 4444555578889998
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC-CCcEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAA 186 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~~~~ 186 (411)
.|..+.+ .-++.+|..+...|..- ..|+ +..+.+-..++|||+++|++++++. +..+++
T Consensus 247 tLftLak-~lpgcei~SD~gNHASM------------------I~GI-rns~v~K~IFrHND~~hL~~lL~~~~~svPKi 306 (570)
T KOG1360|consen 247 TLFTLAK-KLPGCEIFSDEGNHASM------------------IQGI-RNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKI 306 (570)
T ss_pred HHHHHHH-HCCCcEEeccccchHHH------------------HHHh-hhcCCcceeeccCCHHHHHHHHHhCCCCCCce
Confidence 8853312 12456777777877532 1121 2233456778999999999999974 456889
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCC--Ccchh--hhhhhccCCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~--~~d~~--~~sK~~~~G~~~g 260 (411)
|-+|.++++.|.+.| +++|.+++++||.+-++||+|+ |+ .....+..++.|+ ..||+ |++|+||. --|
T Consensus 307 vAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc--VGG 380 (570)
T KOG1360|consen 307 VAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC--VGG 380 (570)
T ss_pred EEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc--ccc
Confidence 999999999999999 9999999999999999999997 66 2222233344454 35765 79999996 345
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
|+..+.++++-++...+.+.+ |.+.+|..++.++++.+++.. ..++...+++..++++.|.++ +++.. ...
T Consensus 381 YIAat~~LvDmiRSyAaGFIF-TTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~----GiPVi-~~p 454 (570)
T KOG1360|consen 381 YIAATRKLVDMIRSYAAGFIF-TTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL----GIPVI-PNP 454 (570)
T ss_pred eehhhhhHHHHHHHhcCceEE-ecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc----CCccc-CCC
Confidence 778889999999887777776 668888999999999988765 356666778888888888776 43322 233
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCCcc-------eee--ecCCCHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFEA-------GFT--SLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~-------~~~--~~~~t~~~i~~~i~~l~~~ 407 (411)
..++.+.+ .+...+.++++.|..+ ||+|..-.++. +|| ...+|.+.++.+++.+..+
T Consensus 455 SHIiPv~v-------------gda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~v 521 (570)
T KOG1360|consen 455 SHIIPVRV-------------GDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDV 521 (570)
T ss_pred cceeeeec-------------cCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHH
Confidence 55555555 4556667888888765 99998776665 465 4678999999999999999
Q ss_pred HHhC
Q 015230 408 LRQI 411 (411)
Q Consensus 408 ~~~~ 411 (411)
++++
T Consensus 522 w~~v 525 (570)
T KOG1360|consen 522 WNEV 525 (570)
T ss_pred HHHc
Confidence 8864
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=216.71 Aligned_cols=341 Identities=13% Similarity=0.087 Sum_probs=218.9
Q ss_pred cCCCEEEeccCCcccccc--C-C-CcHHHHHHHHHHHHcC--CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCC
Q 015230 33 IDGNEYIDYVGSWGPAII--G-H-ADDQVLAALGETMKKG--TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNS 100 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~--g-~-~~~~v~~a~~~~l~~~--~~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~ 100 (411)
.+|+.++++..+ .+- + + .++.+.+++.+.++.. ..| .+..++++.+++++.+.++ .+++|++|+|
T Consensus 29 ~~~~~~i~l~~G---~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G 105 (409)
T PLN00143 29 DDHRLAISFGFG---DPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLG 105 (409)
T ss_pred CCCCceeeCCCC---CCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecC
Confidence 457789998888 443 3 3 7788889999988763 223 2346788999999987654 6789999999
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+++++..+++.. ..+++.|++.+++|+... ......|..+..++.....++. -|+++++++++.
T Consensus 106 ~~~al~~~~~~l--~~~gd~v~v~~P~y~~~~-~~~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~- 169 (409)
T PLN00143 106 CKHAAEIIIKVL--ARPEANILLPRPGFPDVE-TYAIFHHLEIRHFDLLPEKGWE------------VDLDAVEAIADE- 169 (409)
T ss_pred hHHHHHHHHHHH--cCCCCEEEEcCCCCcCHH-HHHHHcCCEEEEEeccCCCCCc------------CCHHHHHHhccc-
Confidence 999999998843 356688999999988643 3333444444333321111211 188999887753
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccC---CCcchhhhhhhcc-
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---VTPDLTTLGKIIG- 254 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~---~~~d~~~~sK~~~- 254 (411)
+...+++++|. |++|.+.+ .+.+++|.++|++|+++||+||+|.++ ..+.. .....+. ...-+.||||.|+
T Consensus 170 -~~~~~~~~nP~-NPTG~~~s-~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 170 -NTIAMVIINPG-NPCGSVYS-YEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred -CCEEEEEECCC-CCCCCccC-HHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 35667777774 45555544 444999999999999999999999987 43321 1111111 1223458999987
Q ss_pred CCcccccccc--cHHH------HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-hc--CChHHHHHHHHHHHHHHHHH
Q 015230 255 GGLPVGAYGG--RRDI------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 255 ~G~~~g~~~~--~~~~------~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~l~~ 323 (411)
+|+|+||+++ ++.+ ++.+.. ......+ .+.+++.++.++++.. .. ++.+++++++.+++.+.|++
T Consensus 247 pGlRvG~~v~~~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 322 (409)
T PLN00143 247 PGWGLGWLVTCDPSGLLQICEIADSIKK---ALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE 322 (409)
T ss_pred CccceEEEEeeCchhhhhhHHHHHHHHH---HHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999987 3333 222221 1111122 3567777777776521 11 34455555655555555554
Q ss_pred HHHhcCCce--EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHH
Q 015230 324 AGKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDI 397 (411)
Q Consensus 324 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i 397 (411)
+ +... .....|+++|+++....... .....+.+.+.+.++||.+.|+. .+.+|++++.+++++
T Consensus 323 ~----~~~~~~~~p~gg~f~w~~l~~~~~~~-------~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l 391 (409)
T PLN00143 323 I----PCIMCPQKAEGAFFALVKLNLLLLED-------IEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSL 391 (409)
T ss_pred C----CCCCCCCCCCeeEEEEEecchhhcCC-------CCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHH
Confidence 3 3221 12345889999885310000 00122334456688899999974 346899998899999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|.+++.+
T Consensus 392 ~~al~rl~~~l~~ 404 (409)
T PLN00143 392 EDGLGRLKSFCGR 404 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=215.92 Aligned_cols=316 Identities=13% Similarity=0.083 Sum_probs=206.7
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
..++||.+|. +++| .+|.+++++.+.++... .++..-..++.+.+++.++ .++++++|+|+++++..+++..
T Consensus 29 ~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~--~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~-- 101 (359)
T PRK03158 29 EKIVKLASNE--NPYG-PSPKVKEAIAAHLDELA--LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRAL-- 101 (359)
T ss_pred CceEEecCCC--CCCC-CCHHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHH--
Confidence 3789998885 4555 68889999988876532 1233334556666666666 6789999999999998877642
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
..+++.|++.+++|+.... .....|..+..++.. ..+ .|++++++.++ +++++++++.++|
T Consensus 102 ~~~gd~v~~~~p~y~~~~~-~~~~~g~~~~~~~~~-~~~--------------~d~~~l~~~~~---~~~~~v~i~~p~N 162 (359)
T PRK03158 102 LNPGTNTVMAEPTFSQYRH-NAIIEGAEVREVPLK-DGG--------------HDLEAMLKAID---EQTKIVWICNPNN 162 (359)
T ss_pred hCCCCEEEEcCCCHHHHHH-HHHHcCCeEEEEecC-CCC--------------cCHHHHHHhcC---CCCCEEEEeCCCC
Confidence 3456789999999986433 333344444443322 111 17888887765 2455665555567
Q ss_pred CCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccc-cccc-Ccc---ccccCCCcchhhhhhhcc-CCcccccccccH
Q 015230 195 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAY-GGA---QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRR 266 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~-~~~---~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~ 266 (411)
++|.+.+ .++|.++++. +++++|+||+|.+| ..+. ... .+..+...-+.||||.++ +|+|+||+++++
T Consensus 163 PtG~~~~----~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~ 238 (359)
T PRK03158 163 PTGTYVN----HEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE 238 (359)
T ss_pred CCCCCCC----HHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH
Confidence 7788777 4455555544 69999999999877 3321 111 111222222459999999 799999999999
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEE
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 345 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 345 (411)
++++.+.... .+++.+.+++.++.++++.-.. ++.++.++++.+++.+.|++ +++. ..+..|+++|+++
T Consensus 239 ~~~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~-~~~~~g~~i~~~~ 308 (359)
T PRK03158 239 ELIEKLNIAR-----PPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKE----YGLF-YYPSQTNFIFVDT 308 (359)
T ss_pred HHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCCe-eCCCcCcEEEEEC
Confidence 9998886422 2466788999998888752111 22333344444444444443 3332 2344578888876
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
.. ...++.+.|.++||.+.++. .+.+|+++. +.+++++++++|+++
T Consensus 309 ~~---------------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 309 GR---------------DANELFEALLKKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred CC---------------CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 21 12678899999999999963 345788866 789999999999875
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=216.60 Aligned_cols=320 Identities=15% Similarity=0.101 Sum_probs=209.1
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEE-eCChHHHHHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRF-VNSGTEACMGVLR 110 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~-~~~g~~a~~~al~ 110 (411)
.+++.++||.+|. ++++ .+|.+++++.+.+..... |+.....++.+.+++.++ .++++++ ++|+++++..+++
T Consensus 31 ~~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~--y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~ 105 (361)
T PRK00950 31 IDPESIIKLGSNE--NPLG-PSPKAVEAIEKELSKIHR--YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMR 105 (361)
T ss_pred CCccceEEccCCC--CCCC-CCHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHH
Confidence 4566899999884 4566 678899999888775333 333334677777777776 6788999 6777888888876
Q ss_pred HHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 111 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 111 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
.. ..+++.|++.+++|... .......|..+..++.....+. |++++++.++ +++++++++
T Consensus 106 ~~--~~~gd~vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~--------------~~~~l~~~~~---~~~~~v~~~ 165 (361)
T PRK00950 106 TF--IDPGDEVIIPTPTFSYY-EISAKAHGAKPVYAKREEDFSL--------------DVDSVLNAIT---EKTKVIFLC 165 (361)
T ss_pred Hh--cCCCCEEEEcCCChHHH-HHHHHHcCCEEEEeecCCCCCc--------------CHHHHHHHhc---cCCCEEEEe
Confidence 42 34567788888887653 3333344544443321111111 7888888775 245565555
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 268 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~ 268 (411)
.++|++|.+.+ .+++.++|+++++++|+||+|.+| ........+..+....+.||||.++ +|+|+||+++++++
T Consensus 166 ~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~ 241 (361)
T PRK00950 166 TPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWL 241 (361)
T ss_pred CCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHH
Confidence 55677888888 889999999999999999999877 2111111111122223459999998 79999999999999
Q ss_pred HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecC
Q 015230 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348 (411)
Q Consensus 269 ~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 348 (411)
++.+.... .++..++++++++.++++ +.+..++..+..+..++.+.+.. .+ ......|+++|+++..
T Consensus 242 ~~~~~~~~-----~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l---~~-~~~~~~~~~i~~~~~~- 308 (361)
T PRK00950 242 IDYYMRAK-----TPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNEL---PF-KVYPSEANFVLVDVTP- 308 (361)
T ss_pred HHHHHHhc-----CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhc---Ce-eECCCcceEEEEECCC-
Confidence 88876422 234466777777776664 22233333333333344443321 11 1123457788887721
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
.+..++.+.|.++||.+.++. .+.+|+++. +.+++++++++|++++
T Consensus 309 -------------~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il 360 (361)
T PRK00950 309 -------------MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIV 360 (361)
T ss_pred -------------CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence 113688999999999998753 235888877 7789999999999875
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=211.18 Aligned_cols=320 Identities=15% Similarity=0.113 Sum_probs=214.6
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
..+|+..|. ++++ .++.+.+++.+.+.......|+......+.+.+++.++ .+++|++|+|+++++..++... .
T Consensus 23 ~~~~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l--~ 97 (351)
T PRK14807 23 YKYKMDANE--TPFE-LPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF--I 97 (351)
T ss_pred ceeEccCCC--CCCC-CCHHHHHHHHHHhhcCcccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh--c
Confidence 347777773 2333 67889999988876432233343335667777777776 6789999999999999888743 4
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
.+++.|++.+++|.. +.......|..+..++.....++ |++++++.++. .++++++++..+|+
T Consensus 98 ~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~~--~~~k~v~l~~p~NP 160 (351)
T PRK14807 98 NKGDVVIYPHPSFAM-YSVYSKIAGAVEIPVKLKEDYTY--------------DVGSFIKVIEK--YQPKLVFLCNPNNP 160 (351)
T ss_pred CCCCEEEEeCCChHH-HHHHHHHcCCeEEEeecCCCCCC--------------CHHHHHHHhhc--cCCCEEEEeCCCCC
Confidence 567889999998874 33444455555444333211111 78999988873 25666666666777
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhc
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~ 273 (411)
+|...+ .+++.++|++++.++|+||+|.+| ........+..+...-+.||||.++ +|+|+||+++++++++.+.
T Consensus 161 tG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~ 236 (351)
T PRK14807 161 TGSVIE----REDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLN 236 (351)
T ss_pred CCCCCC----HHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHH
Confidence 888877 788888898888899999999876 2111111111222233569999998 8999999999999998887
Q ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCc
Q 015230 274 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 353 (411)
Q Consensus 274 ~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 353 (411)
.... .+..+.+++.++.++++...-++.++.++++.+++.+.|+++ +......+.|+++|+.+.+
T Consensus 237 ~~~~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~----~g~~~~~~~~~~~~i~~~~------ 301 (351)
T PRK14807 237 LVKS-----PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKI----PGIKVYPSKTNFILVKFKD------ 301 (351)
T ss_pred HccC-----CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEECcCCccEEEEEcCC------
Confidence 4221 344567888888777753211444455666666666666543 2222234457788887731
Q ss_pred chhcccchHHHHHHHHHHHHcCeEeccCC-----CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 354 EDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
..++.+.|.++||.+.+.. .+.+|+++. +.++.+++++.|++++
T Consensus 302 ----------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 302 ----------ADYVYQGLLERGILVRDFSKVEGLEGALRITVS-SCEANDYLINGLKELL 350 (351)
T ss_pred ----------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHhh
Confidence 2678899999999997753 245888876 5678999999998764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=215.95 Aligned_cols=345 Identities=10% Similarity=0.039 Sum_probs=221.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|..++|+..+. +.-..++.+.+++.+.+.... .|. +..++++.+++++.+.++ .+++|++|+|+++|+.
T Consensus 31 ~~~~~i~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 107 (402)
T PRK06107 31 AGRSIVDLTVGE---PDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF 107 (402)
T ss_pred ccCCEEEcCCCC---CCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 456788988874 322257889999998887532 232 345788999999988765 4789999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++.. ...+++.|++.+++|.+.. ......+.....++.+...++.. |++++++.++. ++++
T Consensus 108 ~~~~~--~~~~gd~vl~~~p~y~~y~-~~~~~~~~~~~~v~~~~~~~~~~------------~~~~l~~~~~~---~~~~ 169 (402)
T PRK06107 108 LALMA--TLEAGDEVIIPAPYWVSYP-DMVLANDGTPVIVACPEEQGFKL------------TPEALEAAITP---RTRW 169 (402)
T ss_pred HHHHH--hcCCCCEEEEecCCCcCHH-HHHHHcCCEEEEecCCcccCCCC------------CHHHHHhhcCc---CceE
Confidence 99864 2456678888888777543 33333343333322221122110 77888887752 4444
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHh-CCEEEEecccccc-ccccC-cc-ccc-cC---CCcchhhhhhhcc-CCc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYG-GA-QEY-FG---VTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~-~~~li~De~~~g~-~~g~~-~~-~~~-~~---~~~d~~~~sK~~~-~G~ 257 (411)
++++..+|++|...+ .+.+++|+++|++| ++++|+||+|..+ ..+.. .. ... .+ ....+.||||.|+ +|+
T Consensus 170 v~l~~p~NPtG~~~s-~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGl 248 (402)
T PRK06107 170 LILNAPSNPTGAVYS-RAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGW 248 (402)
T ss_pred EEEECCCCCCCcCcC-HHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCccc
Confidence 444433555665544 44499999999998 9999999999876 33321 11 111 01 1122458999998 899
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+... ....++..+.++++++..+++.-+. ++.++.++++.+.+.+.|+++ .++.....
T Consensus 249 RiG~~~~~~~~~~~~~~~---~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~---~g~~~~~p 322 (402)
T PRK06107 249 RIGYAAGPADLIAAINKL---QSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAI---PGLSCLVP 322 (402)
T ss_pred ceeeeecCHHHHHHHHHH---HHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccCC
Confidence 999999999998887732 2223566788888888877742111 334455566666666666543 12222234
Q ss_pred eecceEEEEEecCCCCCcchhcccch---HHHHHHH-HHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSET---TKFARFY-RGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
..|+++|+.+....... .+.. .+...+. +.+.++||.+.|+.. +.+|++++.+++++++++++|.++
T Consensus 323 ~gg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~ 397 (402)
T PRK06107 323 DGAFYLYVNCAGLIGKT-----TPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERA 397 (402)
T ss_pred CcceEEeeecccccccc-----cccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 45788888773210000 0100 0123455 455678999999842 458999889999999999999999
Q ss_pred HHhC
Q 015230 408 LRQI 411 (411)
Q Consensus 408 ~~~~ 411 (411)
++++
T Consensus 398 l~~~ 401 (402)
T PRK06107 398 VAAL 401 (402)
T ss_pred HHhc
Confidence 8764
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=215.08 Aligned_cols=330 Identities=13% Similarity=0.045 Sum_probs=214.9
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC-----CC-CEEEEeCChHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP-----SI-EMVRFVNSGTE 103 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~-----~~-~~v~~~~~g~~ 103 (411)
..|+.++||..|. +.-..++.+++++.+.+.....|. +..++++.+++++.+.++ .+ ++|++|+|+++
T Consensus 25 ~~~~~~i~l~~~~---p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~ 101 (393)
T TIGR03538 25 PASKPPIALSIGE---PKHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTRE 101 (393)
T ss_pred hcCCCeEEecCCC---CCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHH
Confidence 3578889999884 322367889999988776533332 346788999999988753 34 47999999999
Q ss_pred HHHHHHHHHHhccCCc--EEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 104 ACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 104 a~~~al~~~~~~~~~~--~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
++..+++.. +.+++ .|++.+++|.+.. ......|..+..++.....++.. |++++++.+.+
T Consensus 102 al~~~~~~l--~~~gd~~~vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~~~------------d~~~l~~~~~~-- 164 (393)
T TIGR03538 102 ALFAFAQAV--INPGQAPLVVMPNPFYQIYE-GAALLAGAEPYFLNCTAENGFLP------------DFDAVPESVWR-- 164 (393)
T ss_pred HHHHHHHHH--cCCCCcceEEecCCCCcchH-HHHHhcCCeEEEeeccccCCCCC------------CHHHHHHHHhh--
Confidence 999988753 23333 3788888887543 33444555555444322222211 78888887763
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCcc----ccccC-----CCcchhhh
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGA----QEYFG-----VTPDLTTL 249 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~----~~~~~-----~~~d~~~~ 249 (411)
++++++++..+|++|... +.+.+++|.++|++|+++||+||+|..+ ..+ .... ....+ ...-+.||
T Consensus 165 -~~k~i~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 165 -RCQLLFVCSPGNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred -cceEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 455555444455556544 3555999999999999999999999877 332 1110 11111 11224589
Q ss_pred hhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 250 GKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 250 sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
||.++ +|+|+||+++++++++.+.... ...+++.+++.+.++.+.+..-.. ++.++.++++.+.+.+.|++.
T Consensus 243 SK~~~~~GlRvG~~i~~~~l~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--- 316 (393)
T TIGR03538 243 SKRSNLPGLRSGFVAGDAEILKAFLRYR---TYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--- 316 (393)
T ss_pred hhhcCCcccceEEEecCHHHHHHHHHHH---HhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 99987 7999999999999888776321 122445667777776666531110 334445555555565655543
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC------------cceeeecCCCH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF------------EAGFTSLAHSS 394 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~------------~~~~~~~~~t~ 394 (411)
.++ .....|+++|+++.. + ..++.+.|. ++||.+.|+.. +.+|++++.++
T Consensus 317 ~~~--~~p~gg~f~~~~~~~------------~---~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~ 379 (393)
T TIGR03538 317 LDL--ELPDAGFYLWPKVPG------------D---DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPL 379 (393)
T ss_pred Ccc--cCCCeeEEEEEECCC------------C---HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCH
Confidence 121 234568899998841 0 156777765 57999987742 34889888899
Q ss_pred HHHHHHHHHHHHH
Q 015230 395 DDIQHTITAAEKV 407 (411)
Q Consensus 395 ~~i~~~i~~l~~~ 407 (411)
+++++++++|++.
T Consensus 380 ~~l~~~l~~l~~~ 392 (393)
T TIGR03538 380 EECVEAAERIRSF 392 (393)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=212.70 Aligned_cols=336 Identities=13% Similarity=0.059 Sum_probs=218.7
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 108 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~a 108 (411)
..++||..+. ..++ .++.+.+++.+.++... .| .+..++++.+++++.+.++ .++++++|+|+++|+..+
T Consensus 33 ~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (391)
T PRK08361 33 ENVISLGIGE--PDFD-TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA 109 (391)
T ss_pred cCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence 4578988773 2233 46788888888876532 22 2346778888888876654 578999999999999998
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
++.. ..+++.|++.+++|.+.. ......|..+..++.....++. -|++++++.++. ++++++
T Consensus 110 ~~~l--~~~g~~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~i~~---~~~~v~ 171 (391)
T PRK08361 110 FESL--LEEGDEVIIPDPAFVCYV-EDAKIAEAKPIRIPLREENEFQ------------PDPDELLELITK---RTRMIV 171 (391)
T ss_pred HHHh--cCCCCEEEEcCCCCcccH-HHHHHcCCEEEEEecCCccCCC------------CCHHHHHHhccc---ccEEEE
Confidence 8743 345678999998887643 3444455555444332211111 188999888863 355555
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccccc--CCCcchhhhhhhcc-CCccccccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF--GVTPDLTTLGKIIG-GGLPVGAYG 263 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~--~~~~d~~~~sK~~~-~G~~~g~~~ 263 (411)
++..+|++|...+ .+.+++|.++|+++++++|+||+|.++ ..+. ....... ....-+.||||.++ +|+|+||++
T Consensus 172 i~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~ 250 (391)
T PRK08361 172 INYPNNPTGATLD-KEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVI 250 (391)
T ss_pred EeCCCCCCCcCcC-HHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhc
Confidence 5544666776655 445899999999999999999999877 3322 1111111 11122458999998 799999999
Q ss_pred ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 015230 264 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 339 (411)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 339 (411)
+++++++.+.... ...+++.+.+.+.++.++++.... ++.++.++++.+.+.+.|+++ .+........|+
T Consensus 251 ~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---~~~~~~~p~g~~ 324 (391)
T PRK08361 251 APEQVIKDMIKLH---AYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEM---PHIKVFEPKGAF 324 (391)
T ss_pred cCHHHHHHHHHHH---hhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCEEE
Confidence 9998888775311 112445567777777776642111 233344455555555555443 122222234467
Q ss_pred eEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 340 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++|+.+..... +..++.+.|. ++||.+.|+. .+.+|+++..+++++++++++|.++++++
T Consensus 325 ~~~~~l~~~~~------------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~~ 391 (391)
T PRK08361 325 YVFANIDETGM------------SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEEL 391 (391)
T ss_pred EEEEECCCCCC------------CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhcC
Confidence 88888842111 1256777776 5799999863 23589988889999999999999998764
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=213.61 Aligned_cols=326 Identities=11% Similarity=0.039 Sum_probs=206.1
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~ 107 (411)
.|+.++||..+. .+++ .++.+.+++.+.......|. +..++++.+++++.+.++ .+++|++|+|+++++..
T Consensus 22 ~~~~~i~l~~~~--p~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~ 98 (374)
T PRK05839 22 KEYKGLDLTIGE--PQFE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN 98 (374)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 478999999884 3344 46778888877665433343 346788999999988765 68999999999999988
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
++++.....+++.|++..|+|...... ....|..+..++.....++.. |.++. .++ +++++
T Consensus 99 ~~~~~~~~~~gd~vlv~~P~y~~~~~~-~~~~g~~v~~v~~~~~~~~~~------------d~~~~--~~~----~~k~v 159 (374)
T PRK05839 99 FPQFVLFDKQNPTIAYPNPFYQIYEGA-AIASRAKVLLMPLTKENDFTP------------SLNEK--ELQ----EVDLV 159 (374)
T ss_pred HHHHHhcCCCCCEEEECCCCchhhHHH-HHhcCCEEEEeecccccCCcC------------Ccchh--hhc----cccEE
Confidence 776431113567788888888764433 345555555444322222211 32222 222 34555
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-cc--------ccCCCcchhhhhhhcc-CC
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QE--------YFGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~--------~~~~~~d~~~~sK~~~-~G 256 (411)
+++..+|++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+.... .. .++...-+.||||.++ +|
T Consensus 160 ~i~nP~NPTG~~~s-~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 238 (374)
T PRK05839 160 ILNSPNNPTGRTLS-LEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG 238 (374)
T ss_pred EEeCCCCCcCcccC-HHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence 54444455555544 455999999999999999999999877 3222111 11 1112223559999987 79
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+|+||+++++++++.+.... ....+..+.+++.++.+++. .++..++.++..+.-++.+.+. .+.. ...
T Consensus 239 lRiG~ii~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~---l~~~--~p~ 307 (374)
T PRK05839 239 LRSGFIAGDASILKKYKAYR---TYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAREI---LGIT--IPP 307 (374)
T ss_pred ceeEEEecCHHHHHHHHHHH---hhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHh---cCCC--CCC
Confidence 99999999999988776321 11234456666666655542 2222222222222222222222 1222 345
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
.|+++|+++.+ ..++.+.|.+ +||.+.|+. .+.+|+++..+++++.+++++|.++
T Consensus 308 gg~fi~~~~~~----------------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~ 371 (374)
T PRK05839 308 ATFYVWLPVDN----------------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTY 371 (374)
T ss_pred eeEEEEEeCCC----------------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 58899998731 1467777764 899999963 2468998888899999999999988
Q ss_pred HH
Q 015230 408 LR 409 (411)
Q Consensus 408 ~~ 409 (411)
+.
T Consensus 372 l~ 373 (374)
T PRK05839 372 LE 373 (374)
T ss_pred hh
Confidence 75
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=215.21 Aligned_cols=331 Identities=13% Similarity=0.107 Sum_probs=211.4
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC---CCCC--CCCHHHHHHHHHHHhhC-----CCCCEEEEeCChHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFG--APCLLENVLAEMVISAV-----PSIEMVRFVNSGTEAC 105 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~---~~~~--~~~~~~~~l~~~l~~~~-----~~~~~v~~~~~g~~a~ 105 (411)
..++++.+|. ++++ .+|.+++++.+++... ..|. +..++++.+++++.+.+ -.+++|++|+|+++++
T Consensus 28 ~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al 104 (374)
T PRK02610 28 IQLDRLDTNE--FPYD-LPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI 104 (374)
T ss_pred cceeEecCCC--CCCC-CCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence 3578888883 3333 7788999998877763 1222 23567778888776653 1578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC-CCCCCCCCCCceeecCCCCHHHHHHHHHcC-CCc
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENN-KGE 183 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~ 183 (411)
..++... ...+++.|++.+|+|... .......|..+..++... ..+. |++++++.+++. .++
T Consensus 105 ~~~~~~~-~~~g~~~Vlv~~P~y~~~-~~~~~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~~~~~~~~~ 168 (374)
T PRK02610 105 RSLLIAT-CLGGEGSILVAEPTFSMY-GILAQTLGIPVVRVGRDPETFEI--------------DLAAAQSAIEQTQNPP 168 (374)
T ss_pred HHHHHHH-cCCCCCeEEEcCCChHHH-HHHHHHcCCEEEEecCCcccCCC--------------CHHHHHHHHHhhcCCC
Confidence 8776532 223334799999999754 344445555554443321 1122 889999888741 135
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCccccc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGA 261 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~ 261 (411)
++++++++.+|++|...+.+ .+++|.++| ++++||+||+|.+| ...............-+.||||.++ +|+|+||
T Consensus 169 ~k~i~l~~P~NPTG~~~s~~-~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~ 245 (374)
T PRK02610 169 VRVVFVVHPNSPTGNPLTAA-ELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGY 245 (374)
T ss_pred ceEEEEeCCCCCCCCCCCHH-HHHHHHhcc--CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceee
Confidence 66666555566677766543 488888877 49999999999877 3211111111111122558999997 7999999
Q ss_pred ccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceE
Q 015230 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 341 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 341 (411)
+++++++++.+.... ..++.+.+++.++.++++.. +.+.+++++..+. ++.+.+.....+........|+++
T Consensus 246 ~v~~~~l~~~l~~~~-----~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~~g~f~ 317 (374)
T PRK02610 246 AIGHPELIAVLEKVR-----LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RDRLYQALQELPQLRVWPSAANFL 317 (374)
T ss_pred eecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCCcceEE
Confidence 999999998886432 13455777887777666432 2223333333222 222322222333222234568888
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
|+++... .+..++.+.|.++||.+.+. .+.+|+++.. .+++++++++|+++++.+
T Consensus 318 ~~~l~~~-------------~~~~~~~~~l~~~gi~v~~~-~~~lRls~~~-~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 318 YLRLSQD-------------AALAALHQALKAQGTLVRHT-GGGLRITIGT-PEENQRTLERLQAALTQL 372 (374)
T ss_pred EEeCCCC-------------CCHHHHHHHHHHCCEEEEeC-CCeEEEeCCC-HHHHHHHHHHHHHHHhhc
Confidence 9887421 12367888899999999874 3578998774 567899999999988754
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=210.67 Aligned_cols=314 Identities=18% Similarity=0.187 Sum_probs=212.1
Q ss_pred CEEEeccCCccccccCC-CcHHHHHHHHHHHHcC--------CCCC------CCCHHHHHHHHHHHhhCCCCCEEEEeCC
Q 015230 36 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG--------TSFG------APCLLENVLAEMVISAVPSIEMVRFVNS 100 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~--------~~~~------~~~~~~~~l~~~l~~~~~~~~~v~~~~~ 100 (411)
.+++||.|| +|+|+ .+|++.+++.++++.. .+.. +..+..+++.+.+++.++. +..++.++
T Consensus 4 ~~~~~~~s~---~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~-~~~l~~~s 79 (370)
T PRK05937 4 SLSIDFVTN---DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA-PEAFIVPS 79 (370)
T ss_pred CceEEeECC---CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CeEEEECC
Confidence 468999999 99999 8999999999998774 2221 2356788999999998864 45566677
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
|+.|+...+. .+.+++++|+.+..+|+.....+..... ....++++|++++++.++..
T Consensus 80 G~~a~~~~~~---~~~~~~d~ii~d~~~H~sv~~~~~~~~~-------------------~~~~~~~~d~~~l~~~l~~~ 137 (370)
T PRK05937 80 GYMANLGLCA---HLSSVTDYVLWDEQVHISVVYSLSVISG-------------------WHQSFRHNDLDHLESLLESC 137 (370)
T ss_pred hHHHHHHHHH---HhCCCCCEEEEEhhhhHHHHHHHHHcCC-------------------ceEEecCCCHHHHHHHHHhh
Confidence 8888865443 3445678899999999766554433211 12335677999999999753
Q ss_pred C---CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccC---CCcchhhhhh
Q 015230 181 K---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFG---VTPDLTTLGK 251 (411)
Q Consensus 181 ~---~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~---~~~d~~~~sK 251 (411)
. +++.+|+++++++++|.+.| +++|.++|+++|+++++||+|+ |. ..+..+. ..++ ..+++.||||
T Consensus 138 ~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tlsK 212 (370)
T PRK05937 138 RQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYSK 212 (370)
T ss_pred hccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEechh
Confidence 1 34567888999999999999 9999999999999999999997 53 3332211 1222 2357789999
Q ss_pred hccC-CcccccccccHHHHHHhcC-CCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 252 IIGG-GLPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 252 ~~~~-G~~~g~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
++++ | +.+...++..+.+.. ..+... +.+.+++++++..++++.+.+ +..+++++++.+++++.|+..
T Consensus 213 ~~g~~G---~~vl~~~~~~~~~~~~~~~~~~--s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~--- 284 (370)
T PRK05937 213 ALGSMG---AALLSSSEVKQDLMLNSPPLRY--STGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA--- 284 (370)
T ss_pred hhhcCc---eEEEcCHHHHHHHHHhCCCCee--cCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC---
Confidence 9984 4 234444555444431 112222 344677777777888887765 234455666666665555321
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---Ccceee--ecCCCHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~--~~~~t~~~i~~~i~ 402 (411)
. .+....+.+.. .....+.+.|.++||++.... .+.+|+ ...+|++|++++++
T Consensus 285 -~-------~~~~~~i~~~~--------------~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~ 342 (370)
T PRK05937 285 -A-------PGCVQPIFLPG--------------ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVS 342 (370)
T ss_pred -C-------CCCEEEEEeCC--------------hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 1 12222233311 123678889999999987542 234676 46789999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
.|++++++
T Consensus 343 ~L~~~~~~ 350 (370)
T PRK05937 343 VLATYLEK 350 (370)
T ss_pred HHHHHHHH
Confidence 99998765
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=214.55 Aligned_cols=320 Identities=16% Similarity=0.073 Sum_probs=211.4
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
+..++|+..|. ++++ .+|.+++++.+. ... ..|+.....++.+.+++.++ .+++|++|+|+++++..+++..
T Consensus 51 ~~~~i~l~~n~--~p~~-~~~~v~~a~~~~-~~~--~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~- 123 (380)
T PLN03026 51 PEDIVKLDANE--NPYG-PPPEVLEALGNM-KFP--YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV- 123 (380)
T ss_pred ccceEEccCCC--CCCC-CCHHHHHHHHhh-Hhh--ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh-
Confidence 56889998884 4554 667788887542 221 12333335677777777777 7889999999999999988742
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..+++.|++.+++|.. +.......|..+..++....... |++++++.++. +++++++++.++
T Consensus 124 -~~~gd~Vlv~~P~y~~-y~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~~--~~~~~v~l~~P~ 185 (380)
T PLN03026 124 -LDPGDKIIDCPPTFGM-YVFDAAVNGAEVIKVPRTPDFSL--------------DVPRIVEAVET--HKPKLLFLTSPN 185 (380)
T ss_pred -cCCCCEEEEcCCChHH-HHHHHHHcCCEEEEeecCCCCCc--------------CHHHHHHHHhc--cCCcEEEEeCCC
Confidence 3456789999998863 33333444554444332211111 78999888842 346666666667
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-ccccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
|++|...+ .+++.++++.. +++|+||+|.+| ..+.... .+..+...-+.||||.++ +|+|+||+++++++++
T Consensus 186 NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~ 260 (380)
T PLN03026 186 NPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIE 260 (380)
T ss_pred CCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHH
Confidence 77788877 66777777654 899999999877 4332111 111112222459999999 8999999999999998
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+.... ..++.+.+++.++.++++..+. ++.++.++++.+++.+.|+++ +........|+++++.+...
T Consensus 261 ~l~~~~-----~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~p~~~~f~~~~~~~~- 330 (380)
T PLN03026 261 YLWRAK-----QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEV----PFLEPYPSDANFILCRVTSG- 330 (380)
T ss_pred HHHHhc-----CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCeECCCCCeEEEEECCCC-
Confidence 876422 1355677888888877753211 445556666666666666654 43222344578888876421
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
.+..++.+.|.++||.+.++. .+.+|+++. +.++++++++.|+++
T Consensus 331 ------------~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~-~~~~~~~l~~al~~~ 379 (380)
T PLN03026 331 ------------RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG-KPEHTDALMEALKQL 379 (380)
T ss_pred ------------CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC-CHHHHHHHHHHHHHh
Confidence 123678899999999998863 245888877 667889999888754
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=209.95 Aligned_cols=322 Identities=22% Similarity=0.251 Sum_probs=215.9
Q ss_pred CEEEeccCCccccccCC-CcHHHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTS-------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~ 107 (411)
+.|++|.++ .++|+ +||++++++.++++++.. ..+..+..+++.+.+++.++. ++.+++++|++++..
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~iv~~sg~~a~~~ 76 (349)
T cd06454 1 KKVLNFCSN---DYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK-EAALVFSSGYAANDG 76 (349)
T ss_pred CCceecccC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC-CCEEEeccHHHHHHH
Confidence 468999999 99999 699999999999987321 113477778899999888863 456677788999998
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC--CCcEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIA 185 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~~~~ 185 (411)
+++.+ ..+++.|++.++.|. .....+...|.. +..++..|.+++++.+++. +.+++
T Consensus 77 ~~~~~--~~~gd~Vl~~~~~~~-~~~~~~~~~g~~-------------------~~~~~~~~~~~le~~i~~~~~~~~~~ 134 (349)
T cd06454 77 VLSTL--AGKGDLIISDSLNHA-SIIDGIRLSGAK-------------------KRIFKHNDMEDLEKLLREARRPYGKK 134 (349)
T ss_pred HHHHh--cCCCCEEEEehhhhH-HHHHHHHHcCCc-------------------eEEecCCCHHHHHHHHHHhhccCCCe
Confidence 87643 245566777655544 333333333332 2222333788889888753 24678
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-c-cccCc-cccccCCCcch--hhhhhhccCCccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGG-AQEYFGVTPDL--TTLGKIIGGGLPV 259 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~-~g~~~-~~~~~~~~~d~--~~~sK~~~~G~~~ 259 (411)
+++++++++++|...+ +++|.++|++||+++|+||+|+ |. . .+... .........|+ .|++|++++ +.
T Consensus 135 ~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~g 208 (349)
T cd06454 135 LIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA--VG 208 (349)
T ss_pred EEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc--cC
Confidence 8889888888998887 9999999999999999999996 43 2 12111 01111122343 489999985 55
Q ss_pred ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec
Q 015230 260 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 338 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 338 (411)
|+++.++++++.+......+. .+.+.++..++++.++++.+.. ++.+++++++.+++.+.|+++ +......+.+
T Consensus 209 G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~~ 283 (349)
T cd06454 209 GYIAGSKELIDYLRSYARGFI-FSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL----GFPVGGSPSH 283 (349)
T ss_pred CEEECCHHHHHHHHHhchhhh-ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCC
Confidence 888888888877754222221 2335667778888888887655 556777788888888877765 3221112223
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
.+.++.+ ++..+..++.+.|.++||.+.+++ .+.+|++ ...+++++++++++|+++
T Consensus 284 ~~~~~~~-------------~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 284 IIPPLIG-------------DDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred cEEEEeC-------------CChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 3333322 112334789999999999997642 2357774 447999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=214.77 Aligned_cols=334 Identities=17% Similarity=0.138 Sum_probs=217.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CC---CCCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SF---GAPCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~---~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~ 107 (411)
..++||..+. +.-..++.+.+++.+.+.... .| .+..++++.+++++.+.++ .++ +|++|+|+++|+..
T Consensus 24 ~~~i~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 100 (387)
T PRK07777 24 TGAVNLGQGF---PDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAA 100 (387)
T ss_pred CCeEEccCCC---CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence 3578988884 222245678888877776522 22 2346778888888877765 244 79999999999998
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
++... ..+++.|++..++|+... .+....|..+..++.... .++. -|++++++.++ +++++
T Consensus 101 ~~~~~--~~~gd~vli~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~~~------------~d~~~l~~~~~---~~~~~ 162 (387)
T PRK07777 101 AVLGL--VEPGDEVLLIEPYYDSYA-AVIAMAGAHRVPVPLVPDGRGFA------------LDLDALRAAVT---PRTRA 162 (387)
T ss_pred HHHHh--cCCCCEEEEeCCCchhhH-HHHHHCCCEEEEeecCCccCCCc------------CCHHHHHHhcC---cccEE
Confidence 88642 356678999898887643 334444544333332211 1111 17888888776 24666
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccccc----CCCcchhhhhhhcc-CCccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~----~~~~d~~~~sK~~~-~G~~~ 259 (411)
|++++.+|++|... +.+.+++|.++|++|++++|+||+|.++ ..+. ......+ +...-+.||||.|+ +|+|+
T Consensus 163 v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi 241 (387)
T PRK07777 163 LIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKI 241 (387)
T ss_pred EEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCcee
Confidence 66666666777765 4555999999999999999999999877 3332 1111111 11222558999998 79999
Q ss_pred ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 260 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
||+++++++++.+.... ...++..+.+.+.++..+++..+. +++++.++++.+++.+.|++. ++.......
T Consensus 242 G~~~~~~~l~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~g 314 (387)
T PRK07777 242 GWACGPAPLIAAVRAAK---QYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA----GFEVHDSAG 314 (387)
T ss_pred EEEecCHHHHHHHHHHH---hhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CCCccCCCc
Confidence 99999998888776321 222344455555555555532111 345566677777777777654 332223345
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC---------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~---------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
|+++|+++..... .+..++++.|. ++||.|.|+. .+.+|+++..+++++++++++|.++
T Consensus 315 ~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~ 383 (387)
T PRK07777 315 TYFLCADPRPLGY-----------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRAL 383 (387)
T ss_pred ceEEEecccccCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 7788887642110 12367888886 5799998873 1258998888999999999999987
Q ss_pred HH
Q 015230 408 LR 409 (411)
Q Consensus 408 ~~ 409 (411)
..
T Consensus 384 ~~ 385 (387)
T PRK07777 384 RG 385 (387)
T ss_pred hc
Confidence 54
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=211.97 Aligned_cols=322 Identities=14% Similarity=0.120 Sum_probs=206.5
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
.++++..|. ++++ .+|.+.+++.+.+.....|+ ......+.+.+++.++ .+++|++|+|+++++..+++.. .
T Consensus 33 ~~~~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y~--~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~--~ 105 (369)
T PRK08153 33 FRARIGANE--SGFG-PSPSVIAAMREAAAEIWKYG--DPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLY--V 105 (369)
T ss_pred ceeEecCCC--CCCC-CCHHHHHHHHHHHHHhhcCC--CCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh--c
Confidence 457888873 2333 78889999988776533333 2224566666666666 6789999999999999988742 3
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE-cccCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVG 194 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~-~~~~~ 194 (411)
.+++.|++.+++|+..... ....|..+..++.. ... .|++++++.+.. ++++++++ +|+|
T Consensus 106 ~~gd~vlv~~p~y~~~~~~-~~~~g~~~~~vp~~--~~~-------------~~~~~l~~~~~~--~~~~~i~l~~P~N- 166 (369)
T PRK08153 106 EPGDPVVTSLGAYPTFNYH-VAGFGGRLVTVPYR--DDR-------------EDLDALLDAARR--ENAPLVYLANPDN- 166 (369)
T ss_pred CCCCEEEECCCcchHHHHH-HHHcCCeEEEeeCC--CCC-------------CCHHHHHHHhcc--cCCcEEEEeCCCC-
Confidence 4567888888888764332 22334433332221 111 167777666542 24455544 5544
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc---hhhhhhhcc-CCcccccccccHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRDIM 269 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d---~~~~sK~~~-~G~~~g~~~~~~~~~ 269 (411)
++|.+.+ .+.+++|.++|+ ++++||+||+|..| ..+....+. ...++ +.||||.++ +|+|+||++++++++
T Consensus 167 PtG~~~~-~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~ 242 (369)
T PRK08153 167 PMGSWHP-AADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTI 242 (369)
T ss_pred CCCCCCC-HHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcchheeeeecCHHHH
Confidence 4566655 333777777776 49999999999877 433221111 11223 459999998 899999999999998
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
+.+.... .+++.++++++++.++++ +++..++.++..+..++.+.+.....++. .....|+++++++..
T Consensus 243 ~~l~~~~-----~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~~-~~p~~~~f~~~~~~~-- 311 (369)
T PRK08153 243 KAFDKVR-----NHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGLT-PLPSATNFVAIDCGR-- 311 (369)
T ss_pred HHHHHhh-----cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cCCCcCcEEEEECCC--
Confidence 8876422 246678899999888875 22333444444444444444433333432 223457788887631
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEec-cCC---CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFA-PSQ---FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-~~~---~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+...+..+.+.|.++||.+. |+. ...+|+++. ++++++.++++|++++..
T Consensus 312 ----------~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~-~~~~~~~~~~al~~~~~~ 365 (369)
T PRK08153 312 ----------DGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG-PDEELDLFAEALPEALEA 365 (369)
T ss_pred ----------CcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 11234788999999999995 542 246888877 789999999999998754
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=212.62 Aligned_cols=314 Identities=16% Similarity=0.163 Sum_probs=211.1
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
.+++||.++. ++++ .+|++++++.+++.....|+.+. ..++.+.+++.++ .++++++++|+++++..+++..
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y~~~~--~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l-- 91 (346)
T TIGR01141 19 KEVIKLNSNE--NPFG-PPPKAKEALRAEADKLHRYPDPD--PAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF-- 91 (346)
T ss_pred CceEEccCCC--CCCC-CCHHHHHHHHHhHHHhhcCCCCC--HHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh--
Confidence 4799999883 2333 78899999998876533333222 3567777777776 6789999999999998887643
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
..+++.|++.+++|.. +.......|..+..++.... +. .|++++++.+. +++++++++..+|
T Consensus 92 ~~~gd~v~~~~p~y~~-~~~~~~~~g~~~~~~~~~~~-~~-------------~d~~~l~~~~~---~~~~~v~l~~p~N 153 (346)
T TIGR01141 92 LEPGDAVLVPPPTYSM-YEISAKIHGAEVVKVPLDED-GQ-------------LDLEDILVAID---DKPKLVFLCSPNN 153 (346)
T ss_pred cCCCCEEEEcCCCHHH-HHHHHHHcCCeEEEeccCCC-CC-------------CCHHHHHHhcC---CCCCEEEEeCCCC
Confidence 3456788888888753 22333344544444332211 11 18888888754 3567777776677
Q ss_pred CCCccCCCHHHHHHHHHHHHHh--CCEEEEecccccc-ccccCccccccCCCcc---hhhhhhhcc-CCcccccccccHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~-~~g~~~~~~~~~~~~d---~~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
++|...+ ++++.++|+.+ ++++|+||+|.++ ..+... +.....++ +.|+||+++ +|+|+||++++++
T Consensus 154 ptG~~~~----~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~ 227 (346)
T TIGR01141 154 PTGNLLS----RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAE 227 (346)
T ss_pred CCCCCCC----HHHHHHHHHhCCCCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchhhhceeeecCHH
Confidence 7888887 66666666655 9999999999876 322111 11111223 348999997 6899999999999
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
+++.+.... .+++.+++++.++.++++.... ++.+++++++.+++++.|+++ +........|.++|+++.
T Consensus 228 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~g~~~~~~~~ 298 (346)
T TIGR01141 228 IIDALNKVR-----APFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL----PGLEVYPSDANFVLIRFP 298 (346)
T ss_pred HHHHHHhcc-----CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCEECCCcCCEEEEecC
Confidence 988887422 2456678888888777654321 445566666666676666654 222222345788888773
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----cceeeecCCCHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----~~~~~~~~~t~~~i~~~i~~l~ 405 (411)
. +++++.+.|.++||.+.++.. +.+|+++. ++++++++++.|+
T Consensus 299 ~---------------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 299 R---------------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred C---------------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHhC
Confidence 2 236789999999999998752 45788866 7899999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=212.41 Aligned_cols=341 Identities=16% Similarity=0.134 Sum_probs=222.0
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.+..++||..+. +....++++.+++.+.+... ..|+ +...+++.+++++.+.++ .++++++|+|+++|+.
T Consensus 29 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~ 105 (393)
T PRK05764 29 QGRDVISLGAGE---PDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALY 105 (393)
T ss_pred ccCCEEEeCCCC---CCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHH
Confidence 355688998884 32226788999998888753 2232 236677888888876654 4688999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++... ..+++.|++.+++|.+. .......|..+..++.....++. -|++.+++.++. ++++
T Consensus 106 ~~~~~~--~~~gd~vl~~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~---~~~~ 167 (393)
T PRK05764 106 NAFMAL--LDPGDEVIIPAPYWVSY-PEMVKLAGGVPVFVPTGEENGFK------------LTVEQLEAAITP---KTKA 167 (393)
T ss_pred HHHHHh--cCCCCEEEecCCCCcch-HHHHHHcCCEEEEEecCcccCCc------------CCHHHHHHhhCc---cceE
Confidence 988743 44567888888888754 33334445544443332111111 178899888852 4455
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccc----cccCCCcchhhhhhhcc-CCcc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQ----EYFGVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~----~~~~~~~d~~~~sK~~~-~G~~ 258 (411)
+++...+|++|.+.+ .+.+++|.++|++|++++|+||+|.++ ..+.. ... +..+....+.||||.++ .|+|
T Consensus 168 v~~~~p~NPtG~~~~-~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R 246 (393)
T PRK05764 168 LILNSPSNPTGAVYS-PEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWR 246 (393)
T ss_pred EEEECCCCCCCcccC-HHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccce
Confidence 454444555666654 344999999999999999999999877 33321 111 11122233558999999 7999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+||+++++++++.+.... ...+...+++++.++.+.++.... ++++++++++.+.+++.|+++ . ++......
T Consensus 247 iG~i~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~ 320 (393)
T PRK05764 247 LGYAAGPKELIKAMSKLQ---SHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI-P--GLECPKPE 320 (393)
T ss_pred eEEEecCHHHHHHHHHHH---hhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCCC
Confidence 999999999988876321 222456677888887777752111 344555556666666666553 0 22222233
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.|+++|+.+...... ......++.+.+. ++||.+.++.. +.+|+++..+++++++++++|.+++++
T Consensus 321 g~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 321 GAFYVFPNVSKLLGK--------SITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLES 391 (393)
T ss_pred cceEEEEeccccccc--------ccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 466888877532110 0011256776664 57999998742 458999888999999999999998875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=212.26 Aligned_cols=343 Identities=13% Similarity=0.060 Sum_probs=215.8
Q ss_pred CCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~ 106 (411)
|+.++++..+...+...+ .++.+.+++.+.+.... .| .+..++++++++++.+... .+++|++|+|+++++.
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~ 109 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIE 109 (401)
T ss_pred CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHH
Confidence 567889888832111123 67889999888877632 23 2335677788888765322 5789999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++... ..+++.|++.+++|... .......|..+..++........ -|++.+++.++. ++++
T Consensus 110 ~~~~~l--~~~gd~v~i~~P~y~~~-~~~~~~~g~~v~~~~~~~~~~~~------------~d~~~l~~~~~~---~~~~ 171 (401)
T TIGR01264 110 MCIAAL--ANAGQNILVPRPGFPLY-ETLAESMGIEVKLYNLLPDKSWE------------IDLKQLESLIDE---KTAA 171 (401)
T ss_pred HHHHHh--CCCCCEEEEeCCCChhH-HHHHHHcCCEEEEeecCCccCCC------------CCHHHHHHHhcc---CceE
Confidence 998753 34567899999888754 33344445444443322111110 078999887763 3455
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc-cccCC--Ccchhhhhhhcc-CCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYFGV--TPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~-~~~~~--~~d~~~~sK~~~-~G~~~g 260 (411)
+++...+|++|...+ .+.+++|.++|+++|+++|+||+|.+| ..+.. ... ..... ..-+.||||.++ +|+|+|
T Consensus 172 v~~~~p~NPtG~~~~-~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG 250 (401)
T TIGR01264 172 LIVNNPSNPCGSVFS-RQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLG 250 (401)
T ss_pred EEEcCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEE
Confidence 555444555665544 445999999999999999999999988 44421 111 11111 122458999987 799999
Q ss_pred cccccH------HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-hc--CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 261 AYGGRR------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 261 ~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
|+++++ ++++.+... ....++.+++++.++.++++.. +. ++.++.++++.+++.+.|+++ .++.
T Consensus 251 ~iv~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~---~~~~ 323 (401)
T TIGR01264 251 WIIIHDRRGILRDIRDGLVKL----SQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV---PGLR 323 (401)
T ss_pred EEEecCcchhHHHHHHHHHHH----hhccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC---CCCc
Confidence 998763 344444311 1113455778888877777531 11 334445555555555555543 1222
Q ss_pred eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHH
Q 015230 332 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
......|+++|+++..... +......++.+.+. ++||.+.|+. .+.+|+++..+++++++++++|.+
T Consensus 324 ~~~p~~g~f~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~ 395 (401)
T TIGR01264 324 PVMPSGAMYMMVGIEMEHF--------PEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQE 395 (401)
T ss_pred ccCCCeeeEEEEEeccccc--------CCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 2234568999998753100 01111256667765 7899999874 245799888889999999999999
Q ss_pred HHHhC
Q 015230 407 VLRQI 411 (411)
Q Consensus 407 ~~~~~ 411 (411)
+++++
T Consensus 396 ~~~~~ 400 (401)
T TIGR01264 396 FCERH 400 (401)
T ss_pred HHhcc
Confidence 98764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=212.70 Aligned_cols=333 Identities=16% Similarity=0.111 Sum_probs=216.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.+..++||.++.. ++ ..++.+.+++.+.+.... .| .+..++++.+++++.+..+ .+++|++|+|+++|+
T Consensus 27 ~~~~~i~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 103 (386)
T PRK07550 27 ADGPLIDLSQAVP--GY-PPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF 103 (386)
T ss_pred cCCCeEEeCCCCC--CC-CCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 3556899998842 22 257788888887765421 22 2457788899999987754 578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..++.+. ...++.|++..++|.... ......|..+..++.....+.. .|.+++++.++. +...
T Consensus 104 ~~~~~~l--~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~~~------------~~~~~l~~~~~~--~~~~ 166 (386)
T PRK07550 104 WAAMVTL--AGAGDEVILPLPWYFNHK-MWLDMLGIRPVYLPCDEGPGLL------------PDPAAAEALITP--RTRA 166 (386)
T ss_pred HHHHHHh--cCCCCEEEEcCCCCcchH-HHHHhcCCEEEEEecCCCcCCC------------CCHHHHHHHhcc--cCcE
Confidence 9888753 346778888888887543 3334445444443332111211 178889988873 2334
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Cc-ccccc---CCCcchhhhhhhcc-CCcc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GG-AQEYF---GVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~-~~~~~---~~~~d~~~~sK~~~-~G~~ 258 (411)
+++++|. |++|...+ .+.+++|.++|++|++++|+||+|.+| ..+. .. ..... .....+.||||.++ +|+|
T Consensus 167 v~~~~P~-NPtG~~~~-~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 244 (386)
T PRK07550 167 IALVTPN-NPTGVVYP-PELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHR 244 (386)
T ss_pred EEEeCCC-CCCCcccC-HHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccc
Confidence 4555554 55665544 555999999999999999999999877 3221 11 11111 11233569999998 8999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+||+++++++++.+.. .....+.+.+.+++.++..+++.+.+ ++.++.++++.+++.+.|++. +.......
T Consensus 245 iG~i~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~ 317 (386)
T PRK07550 245 VGAVVASPARIAEIEK---FMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL----PGWELLAS 317 (386)
T ss_pred eEeeecCHHHHHHHHH---HHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC----CCceeCCC
Confidence 9999999888877763 12223445577777777776654322 344455666666666666553 21122234
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC------CcceeeecC-CCHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKV 407 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~------~~~~~~~~~-~t~~~i~~~i~~l~~~ 407 (411)
.|+++|+.+... ..+..++++.| .++||.+.|+. ...+|+++. .+++++++++++|.+.
T Consensus 318 g~~~~~~~~~~~------------~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 318 GAYFAYVRHPFP------------DRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred ceEEEEecCCCC------------CCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 567888877421 11236777776 46799999863 345898776 4789999999999864
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=211.51 Aligned_cols=325 Identities=15% Similarity=0.138 Sum_probs=210.7
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~ 111 (411)
.++..++||..|. +++| .++.+++++.+.+..... |+......+.+.+++.++ .+++|++|+|+++++..+++.
T Consensus 17 ~~~~~~i~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~--y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~ 91 (356)
T PRK08056 17 ISPDQLLDFSANI--NPLG-MPVSLKRAIIDNLDCAER--YPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSG 91 (356)
T ss_pred CChhhEEEecccc--CCCC-CCHHHHHHHHHHHHhccc--CcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence 3467789999874 5555 778899999887776433 333335677777777776 788999999999999988874
Q ss_pred HHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc
Q 015230 112 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 191 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~ 191 (411)
+.+ +++++.+++|... .......|..+..++.....++.. | +++.+.+. ++++++++..
T Consensus 92 ---l~~-g~viv~~P~y~~~-~~~~~~~g~~~~~v~~~~~~~~~~------------~-~~~~~~~~---~~~k~v~l~~ 150 (356)
T PRK08056 92 ---LKP-RRAMIVTPGFAEY-RRALQQVGCEIRRYSLREADGWQL------------T-DAILEALT---PDLDCLFLCT 150 (356)
T ss_pred ---hCC-CCEEEeCCCcHHH-HHHHHHcCCeEEEEecccccCCCc------------c-HHHHHhcc---CCCCEEEEeC
Confidence 233 3578888887643 333444555544443322222210 3 33444443 3455655554
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccccccCCCcchhhhhhhcc-CCcccccccc-cH
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RR 266 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~-~~ 266 (411)
.+|++|.. .+++.+++|.++|++|++++|+||+|.+| ..+.. ......+...-+.||||.++ +|+|+||+++ ++
T Consensus 151 p~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~ 229 (356)
T PRK08056 151 PNNPTGLL-PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD 229 (356)
T ss_pred CcCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCH
Confidence 45556664 45666999999999999999999999887 43321 11111222223458999999 8999999987 56
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEE
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 345 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 345 (411)
++++.+... ...++.+.+++.++..+++.-.. ++.++.++++.+++.+.|+++ +........|+++|+.+
T Consensus 230 ~~~~~l~~~-----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~~~~~~~ 300 (356)
T PRK08056 230 AAVARMRRQ-----QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCAL----PLLTVWPGRANYLFLRC 300 (356)
T ss_pred HHHHHHHHh-----CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcEEcCCCCcEEEEEc
Confidence 777777531 12455666777777666631111 344455666666666666543 22222234588888877
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
... ..++.+.|.++||.+.++.. +.+|+++. +.++.+.+++.|+++++
T Consensus 301 ~~~---------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 301 ERP---------------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR-SAAENERLLAALRNVLT 354 (356)
T ss_pred CCC---------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc-CHHHHHHHHHHHHHHHc
Confidence 321 25788899999999988742 35788865 67889999999988764
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=211.46 Aligned_cols=347 Identities=13% Similarity=0.038 Sum_probs=221.2
Q ss_pred EEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhC--------C-CCCE
Q 015230 30 MWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAV--------P-SIEM 94 (411)
Q Consensus 30 ~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~--------~-~~~~ 94 (411)
+.+..|+.+++|..+.......+ .++.+++++.+.++.. ..|+ +..++++.+++++.+.+ . .+++
T Consensus 27 ~~~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~ 106 (412)
T PTZ00433 27 KPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDN 106 (412)
T ss_pred ccCCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhh
Confidence 44468889999999832111113 6788999998887752 2332 34678888888887643 1 5789
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
|++|+|+++++..+++.. ..+++.|++..++|+.. .......|..+..++........ -|+++++
T Consensus 107 i~it~G~~~al~~~~~~~--~~~gd~vlv~~P~y~~~-~~~~~~~g~~~~~i~~~~~~~~~------------~d~~~l~ 171 (412)
T PTZ00433 107 VVLCSGVSHAILMALTAL--CDEGDNILVPAPGFPHY-ETVCKAYGIEMRFYNCRPEKDWE------------ADLDEIR 171 (412)
T ss_pred EEEeCChHHHHHHHHHHh--cCCCCEEEEccCCcccH-HHHHHHcCCEEEEEecCccccCc------------CCHHHHH
Confidence 999999999999998853 34567899999998864 34444445544443332111110 1788888
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccC-C--Ccchhhh
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG-V--TPDLTTL 249 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~-~--~~d~~~~ 249 (411)
+.++. +++++++...+|++|...+ .+.+++|.++|++||++||+||+|.+| ..+.. .....+. . ..-+.||
T Consensus 172 ~~~~~---~~~~i~~~~p~NPtG~~~s-~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~Sf 247 (412)
T PTZ00433 172 RLVDD---RTKALIMTNPSNPCGSNFS-RKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGT 247 (412)
T ss_pred HHhcc---CceEEEEeCCCCCCCcccC-HHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccc
Confidence 87763 4555555444555665554 444999999999999999999999987 43321 1111111 1 1224589
Q ss_pred hhhcc-CCcccccccc------cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-hc--CChHHHHHHHHHHHHH
Q 015230 250 GKIIG-GGLPVGAYGG------RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQ 319 (411)
Q Consensus 250 sK~~~-~G~~~g~~~~------~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-~~--~~~~~~~~~~~~~~~~ 319 (411)
||.++ +|+|+||+++ .+++++.+.... ...++.+.+++.++.+++..- +. ++.++.++++.+.+.+
T Consensus 248 SK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~ 323 (412)
T PTZ00433 248 AKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG----MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYN 323 (412)
T ss_pred hhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh----hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99996 7999999975 245666654211 123466778888877776531 11 3344445555555555
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC----CcceeeecCCCH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSS 394 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~~~~~~~~t~ 394 (411)
.|++. .+........|+++|+.+...... ......++.+.|. ++||.+.++. .+.+|+++...+
T Consensus 324 ~L~~~---~~~~~~~p~gg~f~~~~l~~~~~~--------~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~ 392 (412)
T PTZ00433 324 HIGEC---IGLSPTMPRGSMFLMSRLDLEKFR--------DIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPV 392 (412)
T ss_pred HHhcC---CCCcccCCCeeEEEEEEechhhcC--------CCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCH
Confidence 55432 122222344588999987431100 0001256778876 5799999974 245899888889
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
+++++++++|.++++.
T Consensus 393 e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 393 EVLREAVERIKAFCER 408 (412)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-26 Score=212.31 Aligned_cols=316 Identities=14% Similarity=0.077 Sum_probs=205.5
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~~ 106 (411)
++..++||..+ .+....++.+++++.+.... ..|+ +..++++.+++++.+.++ .+++|++|+|+++++.
T Consensus 25 ~~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~ 100 (364)
T PRK07865 25 HPDGIVDLSVG---TPVDPVPPVIQEALAAAADA-PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVA 100 (364)
T ss_pred cCCCEEEcCCC---CCCCCCCHHHHHHHHHHHhh-CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHH
Confidence 45568999888 45443567788888765443 2332 346788999999988754 3789999999999998
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++.+. ...+++.|++.+++|...... ....|..+. .++ +.++++. .++++
T Consensus 101 ~~~~~l-~~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~-------------------~~~--~~~~l~~------~~~~~ 151 (364)
T PRK07865 101 WLPTLL-GLGPGDVVVIPELAYPTYEVG-ARLAGATVV-------------------RAD--SLTELGP------QRPAL 151 (364)
T ss_pred HHHHHH-cCCCCCEEEECCCCcccHHHH-HHhcCCEEE-------------------ecC--ChhhCCc------ccceE
Confidence 876532 235678899999888754322 223333211 111 3333321 35667
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccc------cCCCcchhhhhhhcc-CCc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY------FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~------~~~~~d~~~~sK~~~-~G~ 257 (411)
+++++.+|++|.+.+. +.+++|.++|++|+++||+||+|.++ ..+.. ..+.. .+...-+.||||.++ +|+
T Consensus 152 v~~~~p~NPtG~~~~~-~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 230 (364)
T PRK07865 152 IWLNSPSNPTGRVLGV-DHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGY 230 (364)
T ss_pred EEEcCCCCCCCccCCH-HHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCce
Confidence 6666666667766653 44999999999999999999999877 43321 11111 011122458999997 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
|+||+++++++++.+... .....+..+.+.+.++.++++..+. ++.++.++++.+.+.+.|++. ++......
T Consensus 231 RiG~i~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 303 (364)
T PRK07865 231 RAGFVAGDPALVAELLEV---RKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA----GFRVDHSE 303 (364)
T ss_pred eeEEEecCHHHHHHHHHH---HHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc----CCcccCCC
Confidence 999999999998887631 1222445677777777666642111 334445555555555555543 43333334
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~ 405 (411)
.|+++|+.+.. ....+.+.|.++||.+.|+. .+.+|++++.+++++++++++|+
T Consensus 304 ~~~~~~~~~~~---------------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 304 AGLYLWATRGE---------------DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred ccEEEEEeCCC---------------CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 46678886621 12467788899999998863 23588988778999999999885
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=212.11 Aligned_cols=342 Identities=12% Similarity=0.066 Sum_probs=213.4
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhC--C-CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAV--P-SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~--~-~~~~v~~~~~g~~a~ 105 (411)
..|+.++||..+.. +++++ .++++.+++.+.+.....|+ +..++++.+++++.... + .+++|++|+|+++++
T Consensus 30 ~~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l 108 (404)
T PRK09265 30 EEGHKILKLNIGNP-APFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELI 108 (404)
T ss_pred HcCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHH
Confidence 36778899988732 34465 67789898888766533333 23466777887776433 2 578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.. ..+++.|++.+++|....... ...|..+..++.....++. -|++++++.++. +++
T Consensus 109 ~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~v~~~~~~~~~~~------------~d~~~l~~~~~~---~~~ 170 (404)
T PRK09265 109 VMAMQAL--LNNGDEVLVPAPDYPLWTAAV-SLSGGKPVHYLCDEEAGWF------------PDLDDIRSKITP---RTK 170 (404)
T ss_pred HHHHHHh--CCCCCEEEEeCCCCcChHHHH-HHcCCEEEEEecccccCCC------------CCHHHHHHhccc---cce
Confidence 9988743 345678999999988644333 3334333332221111111 178888887752 455
Q ss_pred E-EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc-cccC--CCcchhhhhhhcc-CCcc
Q 015230 186 A-IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYFG--VTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 186 ~-vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~-~~~~--~~~d~~~~sK~~~-~G~~ 258 (411)
+ ++++| +|++|.+.+ .+.+++|.++|++||+++|+||+|.++ ..+.. ... .... ....+.||||.++ +|+|
T Consensus 171 ~v~l~~P-~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 248 (404)
T PRK09265 171 AIVIINP-NNPTGAVYS-KELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFR 248 (404)
T ss_pred EEEEECC-CCCCCcCCC-HHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccc
Confidence 4 55555 556676555 344999999999999999999999877 33321 111 1111 1122458999996 7999
Q ss_pred cccccc--cHH----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChH---HHHHHHHHHHHHHHHHHHHhc
Q 015230 259 VGAYGG--RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTY---EYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 259 ~g~~~~--~~~----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~---~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+||+++ ++. +++.+.. ....+++.+.+++.++.+++...+. +++. .++.++.+++.+.|+++ .
T Consensus 249 iG~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~---~ 321 (404)
T PRK09265 249 VGWMVLSGPKKHAKGYIEGLDM----LASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAI---P 321 (404)
T ss_pred eEEEEEeCchHHHHHHHHHHHH----HhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 999974 443 3333321 1122456677788887777642111 1121 23444444454555432 0
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTIT 402 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~ 402 (411)
+........|+++|+.+..... +...+.+.+.+.+.++||.+.|+. .+.+|+++..++++++++++
T Consensus 322 ~~~~~~p~~g~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~ 393 (404)
T PRK09265 322 GVSCVKPKGALYAFPKLDPKVY--------PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIG 393 (404)
T ss_pred CCcccCCCcceEEEEEeccccc--------CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHH
Confidence 2222334558899988853210 001223567788899999998873 23578988889999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|.++++.
T Consensus 394 rl~~~l~~ 401 (404)
T PRK09265 394 RIGRFLSG 401 (404)
T ss_pred HHHHHHHH
Confidence 99998764
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=208.28 Aligned_cols=319 Identities=15% Similarity=0.178 Sum_probs=207.2
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
..++||..+. ++.+ .++.+.+++.+.+.....| ++....++.+.+++.++ .+++|++|+|+++++..+++.
T Consensus 19 ~~~~~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~Y--~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~--- 90 (354)
T PRK06358 19 NMILDFSANI--NPLG-VPESLKQAITENLDKLVEY--PDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV--- 90 (354)
T ss_pred cceEEecCCC--CCCC-CCHHHHHHHHHHHHhhhcC--CCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH---
Confidence 4578998774 4455 4788999998887654333 33234566666666666 789999999999999998874
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE-EEEcccC
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEPVV 193 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~-vi~~~~~ 193 (411)
+ .++.|++..++|+... ......|..+..++.....++.. | +++.+.+. .++++ ++++| +
T Consensus 91 ~-~~~~v~i~~P~y~~~~-~~~~~~g~~~~~~~~~~~~~~~~------------d-~~~~~~~~---~~~~~v~~~~P-~ 151 (354)
T PRK06358 91 T-KPKKVLILAPTFAEYE-RALKAFDAEIEYAELTEETNFAA------------N-EIVLEEIK---EEIDLVFLCNP-N 151 (354)
T ss_pred h-CCCcEEEecCChHHHH-HHHHHcCCeeEEEeCccccCCCc------------c-HHHHHhhc---cCCCEEEEeCC-C
Confidence 3 3367899999998543 33344455444433321112110 5 44444443 23444 45666 4
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccC---CCcchhhhhhhcc-CCcccccccc-cH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---VTPDLTTLGKIIG-GGLPVGAYGG-RR 266 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~---~~~d~~~~sK~~~-~G~~~g~~~~-~~ 266 (411)
|++|... +.+.+++|.++|++|++++|+||+|.+| ..+.. ......+ ...-+.||||.++ +|+|+||+++ ++
T Consensus 152 NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~ 230 (354)
T PRK06358 152 NPTGQLI-SKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNK 230 (354)
T ss_pred CCCCCcc-CHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCH
Confidence 5555544 4555999999999999999999999988 43321 1111111 1223458999999 8999999987 56
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEE
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 345 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 345 (411)
.+++.+.... ..++.+.+++.++.++++.-.. ++.++.++++.+++.+.|+++ +......+.|.++|+.+
T Consensus 231 ~~~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~g~f~~~~~ 301 (354)
T PRK06358 231 NLAEKLLQMR-----EPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF----KGIKVYKPSVNFIFFKL 301 (354)
T ss_pred HHHHHHHHhC-----CCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC----CCcEEcCCcceEEEEEc
Confidence 7777776322 2456677888888777742111 334455566666666666543 32222234577888876
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------cceeeecCCCHHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
.+ . .++.+.|.++||.+.++.. +.+|+++. +.++.++++++|++++
T Consensus 302 ~~-------------~---~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~-~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 302 EK-------------P---IDLRKELLKKGILIRSCSNYRGLDENYYRVAVK-SREDNKKLLKALEVIL 353 (354)
T ss_pred Cc-------------h---HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 32 1 5788999999999999732 34788744 6788999999998875
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=210.08 Aligned_cols=334 Identities=13% Similarity=0.128 Sum_probs=215.8
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~ 107 (411)
+..+++|..+. ..+. .++.+.+++.+.+... ..|. +..++++.+++++.+.++ .++++++|+|+++|+..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~ 105 (388)
T PRK07337 29 GRDIIHMGIGE--PDFT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLL 105 (388)
T ss_pred CCCEEEeCCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHH
Confidence 45678888873 1222 5778889988887652 2232 346788899998877654 57899999999999998
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
++... ..+++.|++.+++|...... ....|..+..++.....++.. |++++++.++. ....++
T Consensus 106 ~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~~------------~~~~l~~~~~~--~~~~v~ 168 (388)
T PRK07337 106 ACLAL--VERGDEVLMPDPSYPCNRHF-VAAAEGRPVLVPSGPAERFQL------------TAADVEAAWGE--RTRGVL 168 (388)
T ss_pred HHHHh--cCCCCEEEEeCCCchhhHHH-HHHcCCEEEEeecCCccCCcC------------CHHHHHhhcCc--cceEEE
Confidence 88743 45678899999999865433 333444444433321111110 78888887762 233444
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccCCCcc---hhhhhhhcc-CCccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPD---LTTLGKIIG-GGLPVGA 261 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~~~~d---~~~~sK~~~-~G~~~g~ 261 (411)
+++| +|++|...+ .+.+++|.++|++|++++|+||+|.++ ..+.. ... ...++ +.||||.++ +|+|+||
T Consensus 169 l~~p-~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~---~~~~~vi~~~S~SK~~~~~G~RiG~ 243 (388)
T PRK07337 169 LASP-SNPTGTSIA-PDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSAL---SLGDDVITINSFSKYFNMTGWRLGW 243 (388)
T ss_pred EECC-CCCCCcCcC-HHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChh---hccCCEEEEEechhhcCCchhheee
Confidence 4555 455665554 444999999999999999999999877 33321 111 12233 348999997 7999999
Q ss_pred ccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH--Hhc-CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeee
Q 015230 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR--LKE-PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYI 337 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 337 (411)
+++++++++.+.... .....+.+.+++.++.++++. +.. ++.++.++++.+++.+.|+++ +... .....
T Consensus 244 ~~~~~~l~~~l~~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~~~~~~~p~~ 316 (388)
T PRK07337 244 LVVPEALVGTFEKLA---QNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL----GFKVPVMPDG 316 (388)
T ss_pred eecCHHHHHHHHHHH---HHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCe
Confidence 999998888776321 112334566777776666531 111 333455555556666665553 3321 12345
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHH-HHHcCeEeccCC-------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~v~~~~-------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
|+++|+++..... +...+..++.+. +.++||.+.|+. .+.+|+++..+++++++++++|.+++
T Consensus 317 g~f~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 317 AFYVYADCRGVAH--------PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred eEEEEEecccccC--------CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 8899999853210 011122566655 567899998863 24589988888999999999998875
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=213.83 Aligned_cols=329 Identities=16% Similarity=0.135 Sum_probs=204.7
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC------CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG------TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGT 102 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~------~~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ 102 (411)
+..++|+..+. .+++ .+|.+.+++.+++... ..| .+..++++.+++++.+..+ .+++|++|+|++
T Consensus 33 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIGD--VTQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCcC--CCCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 56789988883 2233 6788899988887752 122 2346688888888876654 688999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC----------CcccCCCCCCCCCCCCCCceeecCCCCHHH
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG----------VATLGLPDSPGVPKGATYETLTAPFNDVSA 172 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 172 (411)
+++..++. .+.+++.|++.+|+|+.....+...+..+ +..++.....++.. |.
T Consensus 110 ~al~~l~~---~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~------------d~-- 172 (409)
T PRK07590 110 CDTGNILD---IFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVP------------EL-- 172 (409)
T ss_pred HHHHHHHH---hcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcc------------cC--
Confidence 99987543 34577889999999987554443332221 11111110011100 11
Q ss_pred HHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccccccC---CCcch
Q 015230 173 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFG---VTPDL 246 (411)
Q Consensus 173 l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~~~~~---~~~d~ 246 (411)
.+ .+++++++...+|++|.+.+ .+.+++|.++|++|+++||+||+|.+| ..+.. ......+ ....+
T Consensus 173 -----~~--~~~k~i~l~nP~NPTG~~~s-~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~ 244 (409)
T PRK07590 173 -----PE--EKVDIIYLCFPNNPTGTVLT-KEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEF 244 (409)
T ss_pred -----cc--cCceEEEEeCCCCCcCCcCC-HHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEE
Confidence 11 24555554333455565544 455999999999999999999999987 43321 1111111 12335
Q ss_pred hhhhhhcc-CCcccccccccHHHHHHhcCCC--------CcccccC-CCCCHHHHHHHHHHHHH-Hhc--CChHHHHHHH
Q 015230 247 TTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG--------PMYQAGT-LSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKI 313 (411)
Q Consensus 247 ~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~--------~~~~~~t-~~~~~~~~a~~~~~l~~-~~~--~~~~~~~~~~ 313 (411)
.||||.++ +|+|+||+++++++++.+.... ....... .+.+.+++.++.++++. ... +++++.++++
T Consensus 245 ~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 324 (409)
T PRK07590 245 RSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMEN 324 (409)
T ss_pred ecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 68999998 8999999999998886321000 0001112 24566777777666642 111 3445566666
Q ss_pred HHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------Ccce
Q 015230 314 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAG 386 (411)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~ 386 (411)
.+++.+.|++. ++.......|+++|+++.+. ....++.+.+. ++||.+.|+. .+.+
T Consensus 325 r~~l~~~L~~~----~~~~~~~~g~~f~wi~~~~~-------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~i 387 (409)
T PRK07590 325 AKIIREGLESA----GFEVYGGVNAPYIWVKTPDG-------------MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYF 387 (409)
T ss_pred HHHHHHHHHhc----CCceecCCcceEEEEECCCC-------------CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEE
Confidence 66666666654 33222233577999988431 11246666665 5699999873 2358
Q ss_pred eeecCCCHHHHHHHHHHHHHHH
Q 015230 387 FTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 387 ~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
|+++..+++++++++++|.+++
T Consensus 388 Ri~~~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 388 RLSAFGSRENVLEAMERIKKAL 409 (409)
T ss_pred EEEccCCHHHHHHHHHHHHhhC
Confidence 8987779999999999998753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=225.37 Aligned_cols=353 Identities=11% Similarity=0.048 Sum_probs=224.0
Q ss_pred EEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC---CEEEEeCChHHHH
Q 015230 30 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI---EMVRFVNSGTEAC 105 (411)
Q Consensus 30 ~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~---~~v~~~~~g~~a~ 105 (411)
+.+.+|..++++..|. ++++ .++.+++++.+.+.......+..+++.++++++++.++ .. ++|++++|+++++
T Consensus 691 ~~~~~g~~vI~LsinE--~d~p-pPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL 767 (1082)
T PLN02672 691 VSGSQESSLIHMDVDE--SFLP-VPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF 767 (1082)
T ss_pred CcccCCCCEEEEeCCC--CCCC-CCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence 4445678899998884 3444 78899999998876643222355678999999999876 33 4899999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.. ..+++.|++..|+|+.. .......|..+..++.....++.. |.+.+++.++.. .+..
T Consensus 768 ~lll~aL--l~pGD~VLVp~PtY~~Y-~~~a~~~Ga~vv~Vpl~~e~gf~l------------D~d~Le~al~~~-~~~~ 831 (1082)
T PLN02672 768 NKLVLCC--VQEGGTLCFPAGSNGTY-VSAAKFLKANFRRIPTKSSDGFKL------------TAKTLASTLETV-KKPW 831 (1082)
T ss_pred HHHHHHH--cCCCCEEEEeCCChHHH-HHHHHHcCCEEEEEecccccCCCC------------CHHHHHHHhccC-CCCE
Confidence 8887632 34567888888888854 444445566555544432223321 788999888632 2346
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-c--c-c---cc-C-----CCcchhhhhh
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A--Q-E---YF-G-----VTPDLTTLGK 251 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~--~-~---~~-~-----~~~d~~~~sK 251 (411)
+++++|++|++|.+. +++.+++|.++|++||++||+||+|+++ ..+... . . . .+ . ...-+.||||
T Consensus 832 I~L~nPnhNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSK 910 (1082)
T PLN02672 832 VYISGPTINPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLST 910 (1082)
T ss_pred EEEECcCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHH
Confidence 778888756666654 4555999999999999999999999977 443211 0 0 0 11 1 0112348999
Q ss_pred hcc-CCccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH----Hhc--CChHHHHHHHHHHHHHHHHH
Q 015230 252 IIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR----LKE--PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 252 ~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~----~~~--~~~~~~~~~~~~~~~~~l~~ 323 (411)
.++ +|+|+||++++ +++++.+..... ....+..++.+++++.+++.. +.+ ++.++.++++.+++.+.|++
T Consensus 911 kf~lpGLRIGylIap~~eLi~~l~~~~~--~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~ 988 (1082)
T PLN02672 911 ELLSGGHEFGFLALNDSVLIDAFHSAPG--LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA 988 (1082)
T ss_pred hhccHHHHheeEEeCCHHHHHHHHHhhh--hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 79999999885 458887763211 111222233444444433310 111 23444566666666666665
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccc-----hHHHHHHHHHHHHc-CeEeccCCC----cceeeecCCC
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE-----TTKFARFYRGMLEE-GVYFAPSQF----EAGFTSLAHS 393 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~~~~t 393 (411)
. ++.......|+++|+++.....+... ...++ ..+...+++.|.++ ||.+.|+.. +.+|++++.+
T Consensus 989 ~----Gi~v~~PeGGFfLwl~l~~~l~~~~~-~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~~ 1063 (1082)
T PLN02672 989 C----GWDVLEPQGGISMVAKPSAYLGKTVK-LKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFALE 1063 (1082)
T ss_pred C----CCeEecCCcEEEEEEEcccccccccc-ccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecCC
Confidence 4 44333344577888765321000000 00000 11246788888876 999999743 4589999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015230 394 SDDIQHTITAAEKVLR 409 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~ 409 (411)
++++++++++|++...
T Consensus 1064 ~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1064 DSEFDRALKAIARFKE 1079 (1082)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998654
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=215.23 Aligned_cols=334 Identities=13% Similarity=0.066 Sum_probs=205.0
Q ss_pred cHHHHHHHHHHHHcC---C-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEE
Q 015230 54 DDQVLAALGETMKKG---T-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 123 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~---~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~ 123 (411)
+..+.+++.+.++.. . .|+ +..++++.+++++.+..+ .+++|++|+|+++++..+++.. ...+++.|++
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l-~~~~gD~Vlv 168 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLL-IGDPSDGVMI 168 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh-ccCCCCEEEE
Confidence 335777777666542 1 122 346788999999987654 5789999999999999999853 1135788999
Q ss_pred EeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEE-EEEcccCCCCCcc
Q 015230 124 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAA-IILEPVVGNSGFI 199 (411)
Q Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~-vi~~~~~~~~G~~ 199 (411)
..++|++... .....|..+..++.....++.. |++++++.++.. ..++++ ++++| +|++|..
T Consensus 169 ~~P~y~~y~~-~~~~~g~~~v~v~~~~~~~~~~------------d~~~l~~~l~~~~~~~~~~k~l~l~~P-~NPTG~~ 234 (481)
T PTZ00377 169 PIPQYPLYSA-AITLLGGKQVPYYLDEEKGWSL------------DQEELEEAYEQAVRNGITPRALVVINP-GNPTGQV 234 (481)
T ss_pred CCCCchhHHH-HHHHcCCEEEEEEeccccCCCC------------CHHHHHHHHHHHHhcCCCeeEEEEECC-CCCCCcC
Confidence 9999986443 3344454444443322222211 789999888631 124655 55555 5556655
Q ss_pred CCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc-cCc-cc-cc-cCC---------Ccchhhhhhhc-c-CCccccccc
Q 015230 200 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGG-AQ-EY-FGV---------TPDLTTLGKII-G-GGLPVGAYG 263 (411)
Q Consensus 200 ~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g-~~~-~~-~~-~~~---------~~d~~~~sK~~-~-~G~~~g~~~ 263 (411)
.+ .+.+++|.++|++|+++||+||+|..+ ..+ ..+ .. .. .+. ..-+.||||.+ + +|||+||++
T Consensus 235 ~s-~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~ 313 (481)
T PTZ00377 235 LT-RDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFE 313 (481)
T ss_pred CC-HHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEE
Confidence 44 455999999999999999999999877 322 111 11 00 011 11234899985 6 699999997
Q ss_pred c---cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 264 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE------------PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 264 ~---~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+ ++++++.+.... ...++.+.+++.++.++++.... +++++.++++.+.+.+.|+++ .
T Consensus 314 ~~~~p~~li~~l~~~~----~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~---~ 386 (481)
T PTZ00377 314 LTNIPPEVREQIYKLA----SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKI---E 386 (481)
T ss_pred EeCCCHHHHHHHHHHh----heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 5 888888886422 12345677888888877742110 122223445555555555443 1
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecCCCHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLAHSSDDIQHTI 401 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~~t~~~i~~~i 401 (411)
++.......|+++|+++.-+....-.........+...+.+.|.++||.+.|+.. +.+|+++..+++++++++
T Consensus 387 g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l 466 (481)
T PTZ00377 387 GVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMV 466 (481)
T ss_pred CcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHH
Confidence 2233334457888876631100000000000001122345666788999998741 258999888889999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
++|.+++++
T Consensus 467 ~rl~~~~~~ 475 (481)
T PTZ00377 467 KKIKEFHES 475 (481)
T ss_pred HHHHHHHHH
Confidence 999998764
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=206.48 Aligned_cols=303 Identities=12% Similarity=0.099 Sum_probs=206.7
Q ss_pred cccCC-CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 48 AIIGH-ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 48 ~~~g~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
+|+|+ .||+++++..++++.. ++..++++++.+.+++.++ .++++++++||++|+..++... ..+++.|++..
T Consensus 28 ~ylgl~~~~~~~~~~~~~~~~~---~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al--~~~gd~Vli~~ 102 (346)
T TIGR03576 28 DLTGLAGGFKIDEEDLELLETY---VGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILAL--EPPGRKVVHYL 102 (346)
T ss_pred ccccCCCChhHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHh--CCCCCEEEECC
Confidence 78999 8999999999999884 4677899999999999997 6799999999999999999742 23456666532
Q ss_pred --CCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCH
Q 015230 126 --GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 203 (411)
Q Consensus 126 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~ 203 (411)
...|..+.....+.|..+ +.++++++++. . .++++|++++ .++.|.+.+ .
T Consensus 103 ~d~p~~~s~~~~~~l~ga~~---------------------~~~~~l~~l~~----~-~~~~lIiitg-~s~~G~v~~-~ 154 (346)
T TIGR03576 103 PEKPAHPSIPRSCKLAGAEY---------------------FESDELSELKK----I-DGTSLVVITG-STMDLKVVS-E 154 (346)
T ss_pred CCCCCchhHHHHHHHcCCEE---------------------eccCCHHHHhh----C-cCceEEEEEC-CCCCCcccC-H
Confidence 345555544444444321 11235555322 1 2456777766 466777754 2
Q ss_pred HHHHHHHHHHHHhCCEEEEecccccc--c-cccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCccc
Q 015230 204 DFLNAIRRITKENGALLIFDEVMTGF--R-LAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 280 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~~~g~--~-~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~ 280 (411)
+.+++|.++|++||++|++||+|..+ . .+.. ....++.+.-+.||||++ +|+|+||+++++++++.+......+
T Consensus 155 ~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~~divv~s~SKal-aG~r~G~v~~~~~li~~l~~~~~~~- 231 (346)
T TIGR03576 155 EDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLGADLVVTSTDKLM-DGPRGGLLAGRKELVDKIKSVGEQF- 231 (346)
T ss_pred HHHHHHHHHHHHcCCEEEEECCccccccccCCCC-CHHHcCCcEEEeccchhc-cccceEEEEeCHHHHHHHHHhhcCc-
Confidence 33999999999999999999999733 1 1221 111223223355899965 3679999999999999887543332
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccc
Q 015230 281 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360 (411)
Q Consensus 281 ~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (411)
.++.++++++++.++|+.+..+..++.++++.+++.+.++++ ... ..+ ++|+++++...
T Consensus 232 --~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~----~~~--~~~-~~f~~~~~~~~------------ 290 (346)
T TIGR03576 232 --GLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL----NVE--RTP-TGFVIKGVEEE------------ 290 (346)
T ss_pred --ccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC----CCC--cCC-CeEEEEeCCCC------------
Confidence 223577788888888876443455666777777766666632 221 123 44777766321
Q ss_pred hHHHHHHHHHHHHcCeEeccCC-----CcceeeecCCCHH---HHHHHHHHHHHHH
Q 015230 361 TTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSD---DIQHTITAAEKVL 408 (411)
Q Consensus 361 ~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~~~~~t~~---~i~~~i~~l~~~~ 408 (411)
...+...+.|.++||.+.|+. .+++|++++..++ +++.++++|++.+
T Consensus 291 -~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 291 -KLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred -CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 112456677888899999963 3468998887765 7999999998765
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=207.69 Aligned_cols=321 Identities=13% Similarity=0.082 Sum_probs=208.9
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~ 112 (411)
+..++|+..+. ++++ .+|.+++++.+.+.......|++.-..++.+.+++.++ . .++|++|+|+++++..++++.
T Consensus 25 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~ 101 (356)
T PRK04870 25 ATGMVKLDAME--NPYR-LPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALAC 101 (356)
T ss_pred CCCceeCcCCC--CCCC-CCHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHh
Confidence 45789987773 3444 78889999999886532223333233566666666665 3 358999999999999888742
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++.+++|... .......|..+..++.....++ |++++++.+... +++++++...
T Consensus 102 --~~~gd~vlv~~P~y~~~-~~~~~~~g~~~~~i~~~~~~~~--------------d~~~l~~~~~~~--~~~~v~l~~p 162 (356)
T PRK04870 102 --AKPGATVLAPEPGFVMY-RMSAKLAGLEFVGVPLTADFTL--------------DLPAMLAAIAEH--RPALVFLAYP 162 (356)
T ss_pred --cCCCCEEEECCCCHHHH-HHHHHHcCCEEEEecCCCCCCC--------------CHHHHHHHhhcC--CCCEEEEcCC
Confidence 34567899999988753 3444455555554443211111 889999888642 4566655544
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
+|++|...+ .+.+++|.++| ++++|+||+|.+| ...........+...-+.|||| ++ +|+|+||+++++++++
T Consensus 163 ~NPtG~~~~-~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~ 237 (356)
T PRK04870 163 NNPTGNLFD-DADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIA 237 (356)
T ss_pred CCCCCCCCC-HHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHH
Confidence 666676665 33366666666 7899999999877 3211111111122223558999 77 6999999999999988
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+.... ..++.+.+++.++..+++.... ++.+++++++.+++.+.|+++ +........|+++|+.+.+
T Consensus 238 ~~~~~~-----~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~-- 306 (356)
T PRK04870 238 ELDKVR-----PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL----PGVTVFPSAANFILVRVPD-- 306 (356)
T ss_pred HHHHcc-----CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEECCCCCeEEEEECCC--
Confidence 886422 2345677777776666643221 444555666666666666553 2222234457788887631
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
..++.+.|.++||.|.++. .+.+|+++. +.+++++++++|++++
T Consensus 307 --------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 307 --------------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG-TPEENAQFLAALKAAL 356 (356)
T ss_pred --------------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHhC
Confidence 2578889999999998863 235788877 6788999999998753
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=211.34 Aligned_cols=307 Identities=14% Similarity=0.103 Sum_probs=192.7
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC
Q 015230 73 APCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 147 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (411)
+..++++++++++.+..+ .+++|++|+|+++++..++... ..+++.|++.+|.|.+.........|..+..++
T Consensus 87 G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l--~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~ 164 (468)
T PLN02450 87 GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCL--AEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIH 164 (468)
T ss_pred ChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHh--CCCCCEEEECCCCCCchHHHHhhcCCcEEEEEe
Confidence 446788999999987543 5789999999999999888742 345678888888887654433323454444433
Q ss_pred CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 148 LPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
.....++.. |++++++.+++. ..+++++++...+|++|... +.+.+++|.++|++|+++||+||
T Consensus 165 ~~~~~~~~~------------~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~-s~e~l~~ll~~a~~~~~~iI~DE 231 (468)
T PLN02450 165 CSSSNGFQI------------TESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTT-TRTELNLLVDFITAKNIHLISDE 231 (468)
T ss_pred cCCccCCcC------------CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEEc
Confidence 321222211 678888877641 23555544443344555544 45559999999999999999999
Q ss_pred ccccc-ccccCc--ccccc-----------CCCcchhhhhhhcc-CCcccccccccHH-HHHHhcCCCCcccccCCCCCH
Q 015230 225 VMTGF-RLAYGG--AQEYF-----------GVTPDLTTLGKIIG-GGLPVGAYGGRRD-IMEMVAPAGPMYQAGTLSGNP 288 (411)
Q Consensus 225 ~~~g~-~~g~~~--~~~~~-----------~~~~d~~~~sK~~~-~G~~~g~~~~~~~-~~~~~~~~~~~~~~~t~~~~~ 288 (411)
+|.++ ..+..+ ..... +...-+.||||.++ +|+|+||++++++ +++.+.... . ....+.
T Consensus 232 ~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~---~--~~~~s~ 306 (468)
T PLN02450 232 IYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS---S--FGLVSS 306 (468)
T ss_pred cccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh---h--cCCCCH
Confidence 99876 433211 11111 11122559999998 8999999988644 555554211 1 123466
Q ss_pred HHHHHHHHHHHHHh---c--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHH
Q 015230 289 LAMTAGIHTLKRLK---E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 289 ~~~a~~~~~l~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
+++.++.++++.-. . ++.+++++++.+.+.+.|++. ++.......|+++|+++..... . .....
T Consensus 307 ~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~----gi~~~~~~~g~flwi~l~~~~~-~------~~~~~ 375 (468)
T PLN02450 307 QTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA----GIKCLKSNAGLFCWVDMRHLLK-S------NTFEA 375 (468)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcccCCCceEEEEEEchHhcC-c------CCchH
Confidence 77777776664211 0 223444555555555555443 4433334568899998853210 0 11112
Q ss_pred HHHHHHHHH-HcCeEeccCC------CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 364 FARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 364 ~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
..++.+.+. ++||.+.|+. .+.+|++++ .+++++++++++|++++.+
T Consensus 376 ~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~ 430 (468)
T PLN02450 376 EMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVES 430 (468)
T ss_pred HHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 234555554 5799999984 235899888 4899999999999998764
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=208.25 Aligned_cols=315 Identities=15% Similarity=0.077 Sum_probs=206.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~~ 106 (411)
+++.++|+.++ ++....++.+.+++.+..... .| .+..++++++++++.+.++ .+++|++|+|+++++.
T Consensus 19 ~~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~ 94 (357)
T TIGR03539 19 HPDGIVDLSVG---TPVDPVPPLIRAALAAAADAP-GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA 94 (357)
T ss_pred CCCCeEEccCC---CCCCCCCHHHHHHHHHHHhhC-CCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHH
Confidence 45678999988 444335777888887665432 23 2456888999999988754 4689999999999998
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++.++ ...+++.|++.+++|.+.... ....|..+.. + ++++.++ .+++++
T Consensus 95 ~~~~~l-~~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~-------------------v--~~~~~l~------~~~~~~ 145 (357)
T TIGR03539 95 WLPTLL-GLGPGDTVVIPELAYPTYEVG-ALLAGATPVA-------------------A--DDPTELD------PVGPDL 145 (357)
T ss_pred HHHHHH-cCCCCCEEEECCCCcHHHHHH-HHhcCCEEec-------------------c--CChhhcC------ccCccE
Confidence 877642 235678899999999764333 2223331111 1 1333222 135677
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccc------cCCCcchhhhhhhcc-CCc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY------FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~------~~~~~d~~~~sK~~~-~G~ 257 (411)
++++..+|++|...+. +.+++|.++|++||+++|+||+|.++ ..+.. ..++. .....-+.||||.++ +|+
T Consensus 146 v~~~~p~NPtG~~~~~-~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~ 224 (357)
T TIGR03539 146 IWLNSPGNPTGRVLSV-DELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGY 224 (357)
T ss_pred EEEeCCCCCcCccCCH-HHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCce
Confidence 7776666667766554 34999999999999999999999877 33321 11110 011122448999996 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
|+||+++++++++.+.... ....+..+.+++.++.++++.... ++.++.++++.+++.+.|++. +.......
T Consensus 225 R~G~~i~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~----g~~~~~p~ 297 (357)
T TIGR03539 225 RAGFVAGDPALVAELLTVR---KHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA----GFRIDHSE 297 (357)
T ss_pred eEEEEecCHHHHHHHHHHH---hhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCcCCC
Confidence 9999999999888775321 222455677788777777642111 334455555656666655543 33222334
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAA 404 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l 404 (411)
.|+++|+.+.. ....+.+.|.++||.+.|+. .+.+|+++..+++++++++++|
T Consensus 298 ~~~~~~~~~~~---------------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 298 AGLYLWATRGE---------------DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred ccEEEEEECCC---------------CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 56777886521 12568888999999999974 2458998888899999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=207.83 Aligned_cols=321 Identities=15% Similarity=0.109 Sum_probs=207.0
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
++.++||..+. ++++ .+|.+++++.+.+.... ..|+..-..++.+.+++.++ .+++|++|+|+++++..+++..
T Consensus 23 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~-~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l- 97 (353)
T PRK05387 23 LAKLIKLNTNE--NPYP-PSPKVLEAIRAALGDDL-RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF- 97 (353)
T ss_pred ccceeeccCCC--CCCC-CCHHHHHHHHHHhhhhh-hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh-
Confidence 35679999885 3433 57889999988776521 12232223566666666666 7889999999999999998853
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..+++.|++.+++|.. +.......|..+..++.....++ |++++++ ....+++++| +
T Consensus 98 -~~~gd~vlv~~P~y~~-~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~------~~~~v~~~~P-~ 154 (353)
T PRK05387 98 -FNHDRPLLFPDITYSF-YPVYAGLYGIPYEEIPLDDDFSI--------------DVEDYLR------PNGGIIFPNP-N 154 (353)
T ss_pred -cCCCCEEEEeCCCHHH-HHHHHHHcCCEEEEeecCCCCCC--------------CHHHHHh------cCCEEEEeCC-C
Confidence 3466788888888854 34444445554444333211111 7777652 1233455555 5
Q ss_pred CCCCccCCCHHHHHHHHHHHHHh-CCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~-~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
|++|.+.+ .+++.++++++ ++++|+||+|..| ........+..+...-+.||||.++ +|+|+||+++++++++
T Consensus 155 NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~ 230 (353)
T PRK05387 155 APTGIALP----LAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIE 230 (353)
T ss_pred CCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHH
Confidence 56677766 55556666554 9999999999866 2111111111222223458999999 8999999999999988
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+...... ..+++.+.+++.++.++++..+. ++.+++++++.+++.+.|++. ++.. ....|.++|+.+.+
T Consensus 231 ~l~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~~-- 301 (353)
T PRK05387 231 ALNRVKNS--FNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL----GFEV-LPSKANFVFARHPS-- 301 (353)
T ss_pred HHHHhhcc--CCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCeE-CCCcCcEEEEECCC--
Confidence 87643211 13556778888887777642111 445566666667777776654 3322 23446777776532
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+..++.+.|.++||.+.+.+ .+.+|+++. +.+++++++++|++++.
T Consensus 302 ------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 302 ------------HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred ------------CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 113678899999999996653 235888876 67999999999998875
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=207.17 Aligned_cols=305 Identities=15% Similarity=0.060 Sum_probs=197.9
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
..++|+.+|. ++++...+.+.+ ..+... +... ..|.+.+++.+ +.++|++|+|+++++..++. .
T Consensus 20 ~~~i~l~~ne--~p~~~~~~~~~~---~~~~~y-----p~~~-~~Lr~~ia~~~-~~~~I~it~Gs~~al~~~~~----~ 83 (330)
T PRK05664 20 ADWLDLSTGI--APWPWPVPAIPA---DAWARL-----PETD-DGLEAAARAYY-GAPQLLPVAGSQAAIQALPR----L 83 (330)
T ss_pred HHheeecCCc--CCCCCCCcccCH---HHHHhC-----CCCh-HHHHHHHHHHh-CCCCEEECcCHHHHHHHHHH----c
Confidence 3579999987 677765333322 223331 2111 45555555555 56899999999999988753 3
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
.+++.|++.+|+|+..... ....|. ++..++ .+++++.++ ....+++++|+| +
T Consensus 84 ~~gd~v~v~~P~y~~~~~~-~~~~g~-------------------~~~~v~---~~~~~~~~~---~~~~v~l~nP~N-P 136 (330)
T PRK05664 84 RAPGRVGVLSPCYAEHAHA-WRRAGH-------------------QVRELD---EAEVEAALD---SLDVLVVVNPNN-P 136 (330)
T ss_pred cCCCEEEEcCCChHHHHHH-HHHcCC-------------------eEEEec---hhhHhhhhc---CCCEEEEeCCcC-C
Confidence 4678899999999864332 223333 223332 344555554 223567777864 5
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhc
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~ 273 (411)
+|.+.+ .+.+++|.++|++++++||+||+|.++ ...........+...-+.||||.++ +|+|+||+++++++++.+.
T Consensus 137 TG~~~s-~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~ 215 (330)
T PRK05664 137 TGRRFD-PARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALA 215 (330)
T ss_pred CCCccC-HHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHH
Confidence 555554 344999999999999999999999876 3222222211111223559999999 8999999999999988886
Q ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCC
Q 015230 274 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 352 (411)
Q Consensus 274 ~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 352 (411)
... .++..+.+++.++.++++.... ++.++.++++.+++.+.|++. +.. ...+.++++|+.+.
T Consensus 216 ~~~-----~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~-~~~~~~~f~~~~~~------ 279 (330)
T PRK05664 216 ELL-----GPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH----GLT-PAGGCALFQWVRTE------ 279 (330)
T ss_pred Hhc-----CCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC----CCc-ccCCcceEEEEecC------
Confidence 421 2445677777887777753221 445566666666676666654 321 11222356666541
Q ss_pred cchhcccchHHHHHHHHHHHHcCeEeccCC-CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 353 FEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+..++.+.|.++||.|...+ .+.+|+++..+.++++++++.|+++.++
T Consensus 280 ----------~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 280 ----------DAAALHEFLARRGILTRLFEQPASLRFGLPADEADWARLDQALLAYRKE 328 (330)
T ss_pred ----------CHHHHHHHHHHCCeEEEECCCCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 12678899999999998753 3468998877788899999999887654
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=214.01 Aligned_cols=332 Identities=14% Similarity=0.086 Sum_probs=211.2
Q ss_pred EEEeccCCccccccCCCc--HHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEE--EEeCChHHH
Q 015230 37 EYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP---SIEMV--RFVNSGTEA 104 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~--~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~~v--~~~~~g~~a 104 (411)
.++||..+....+.+..+ +.+.+++.+.++... .| .+..++++.+++++.+... .++++ ++|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 568988885333333333 678888877765421 23 3457888999999876543 46776 999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC--CCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+..++++.....+++.|++.+++|++. .......|..+..++. ++..++ |++.+++.++..+.
T Consensus 107 l~~~~~~l~~~~pGd~Vlv~~P~y~~~-~~~~~~~g~~~v~v~~~~~~~~~~--------------d~~~l~~~~~~~~~ 171 (396)
T PRK09257 107 LRVGADFLKRAFPDAKVWVSDPTWPNH-RAIFEAAGLEVKTYPYYDAATKGL--------------DFDAMLADLSQAPA 171 (396)
T ss_pred HHHHHHHHHHhCCCCeEEECCCCcccH-HHHHHHcCCcEEEEeccccccCcc--------------CHHHHHHHHHhCCC
Confidence 999987543345778999999999865 4444455555555443 111222 89999988875433
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc-cc-Ccc---cccc-CCCcchhhhhhhcc-
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AY-GGA---QEYF-GVTPDLTTLGKIIG- 254 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~-g~-~~~---~~~~-~~~~d~~~~sK~~~- 254 (411)
+..++++...+|++|... +.+.+++|.++|++|++++|+||+|.++ .. +. ... +... .....+.||||.++
T Consensus 172 ~~~~~i~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 250 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGL 250 (396)
T ss_pred CCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcc
Confidence 345555455555566554 4555999999999999999999999877 32 11 111 1111 12233568999999
Q ss_pred CCcccccccc---cHHH----HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHHH
Q 015230 255 GGLPVGAYGG---RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQ 319 (411)
Q Consensus 255 ~G~~~g~~~~---~~~~----~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~~ 319 (411)
+|+|+||+++ +++. +..+.. .......+.+++++.++.+.++.- .+ +++++.++++.+.+.+
T Consensus 251 ~GlRiG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~ 327 (396)
T PRK09257 251 YGERVGALSVVAEDAEEADRVLSQLKA---TIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVE 327 (396)
T ss_pred ccccceeEEEEeCCHHHHHHHHHHHHH---HhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999962 4443 333321 111123334667766666665321 11 3455666666666666
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQ 398 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~i~ 398 (411)
.|++..............|+++|+.+.. +.+.+.+.++||.+.|.+ |++++ .++++++
T Consensus 328 ~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------------~~~~~l~~~~~V~~~p~~----ri~~~~~~~~~i~ 386 (396)
T PRK09257 328 ALKAKGPSRDFDFIARQRGMFSYSGLTP-----------------EQVDRLREEFGVYAVGSG----RINVAGLNESNID 386 (396)
T ss_pred HHHhcCCCCCcccccccceEEEecCCCH-----------------HHHHHHHHcCCEEEcCCC----eEEEeeCCHHHHH
Confidence 6666521001222334568888887621 345555677799998853 88765 7999999
Q ss_pred HHHHHHHHHH
Q 015230 399 HTITAAEKVL 408 (411)
Q Consensus 399 ~~i~~l~~~~ 408 (411)
+++++|.+++
T Consensus 387 ~~~~~i~~~~ 396 (396)
T PRK09257 387 YVAEAIAAVL 396 (396)
T ss_pred HHHHHHHhhC
Confidence 9999998763
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=205.76 Aligned_cols=304 Identities=16% Similarity=0.060 Sum_probs=200.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~ 113 (411)
..++||.+|. +++|...+.+.. ..+.. |++.. .+|.+.+++.++ . +++|++|+|+++++..+..
T Consensus 24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~~~-----Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~--- 89 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPVPPVPA---DAWRR-----LPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA--- 89 (339)
T ss_pred hhhceeccCC--CCCCCCCCCCCH---HHHHh-----CCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH---
Confidence 5689999998 888865333211 22222 45444 888999999887 3 5899999999999986543
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
.+ +++++++.+++|......+ ...|..+. .++.++ +.+.+ .-..+++++|+|
T Consensus 90 ~~-~~g~v~v~~P~y~~y~~~~-~~~g~~~~-------------------~v~~~~-~~~~~------~~~~v~l~nPnN 141 (339)
T PRK06959 90 LL-PRGRVGIAPLAYSEYAPAF-ARHGHRVV-------------------PLDEAA-DTLPA------ALTHLIVVNPNN 141 (339)
T ss_pred hc-CCCeEEEcCCCcHHHHHHH-HHCCCEEE-------------------eecccc-hhccc------cCCEEEEeCCCC
Confidence 23 3356888888888543333 33333222 222211 11111 113577788854
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~ 271 (411)
++|.+.+ .+.+++|.+.|.++++++|+||+|.+| ...............-+.||||.++ +|+|+||+++++++++.
T Consensus 142 -PTG~~~s-~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~ 219 (339)
T PRK06959 142 -PTAERLP-AARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAA 219 (339)
T ss_pred -CCCCCCC-HHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEEEecCHHHHHH
Confidence 4555544 444888888899999999999999987 3222111111111122459999999 89999999999999998
Q ss_pred hcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC
Q 015230 272 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 350 (411)
Q Consensus 272 ~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 350 (411)
+.... ..++.+.+++.++.++++.... ++.++.++++.+++.+.|+++ ++.. ...++++|+++.+
T Consensus 220 l~~~~-----~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~--~~~~~f~~~~~~~--- 285 (339)
T PRK06959 220 LRDAL-----GAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH----GFAV--HATPLFSWTDDPR--- 285 (339)
T ss_pred HHHhc-----CCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCCc--cCcceEEEEeCCC---
Confidence 87432 2455677888888888753211 445566666777777777665 3221 1346777876521
Q ss_pred CCcchhcccchHHHHHHHHHHHHcCeEeccCC-CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..++.+.|.++||+|+..+ .+.+|++...+.++++++++.|+++++.
T Consensus 286 -------------~~~l~~~l~~~GI~vr~~~~~~~lRisi~~~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 286 -------------AAALHAALARRGIWTRYFAPPPSVRFGLPADEAEWQRLEDALAECVPT 333 (339)
T ss_pred -------------HHHHHHHHHhCCeEEEECCCCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 2578999999999998753 3468999877889999999999988764
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=204.85 Aligned_cols=302 Identities=16% Similarity=0.120 Sum_probs=192.3
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
.++||.+|. ++++ + .... ..|++....+|.+.+++.++ .+++|++|+|+++++..++++ .
T Consensus 17 ~~i~l~~Ne--np~~--~----------~~~~--~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~---~ 77 (332)
T PRK06425 17 RIIDFSANI--NDFM--D----------IGDI--SIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY---I 77 (332)
T ss_pred CEEEecccc--CCCc--C----------hhhc--ccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH---h
Confidence 578998886 5553 0 1111 23566667888888988888 788999999999999998863 2
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
+++++++.+|+|... .......|..+..++... .+ .|.+.++ +. ++++++++..+|+
T Consensus 78 -~~~~vv~~~P~y~~y-~~~~~~~G~~v~~vp~~~-~~--------------~~~~~l~----~~--~~k~v~l~nP~NP 134 (332)
T PRK06425 78 -NVGNIIIVEPNFNEY-KGYAFTHGIRISALPFNL-IN--------------NNPEILN----NY--NFDLIFIVSPDNP 134 (332)
T ss_pred -CCCcEEEeCCChHHH-HHHHHHcCCeEEEEeCCc-cc--------------CcHHHHh----hc--CCCEEEEeCCCCC
Confidence 335677888888854 344444455444433211 00 0333332 21 3444444344445
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc---cCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~---~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
+|...+ .+.+++|.++|++|+++||+||+|.+| ..+....... .+...-+.||||.++ +|+|+||+++++++++
T Consensus 135 TG~~~s-~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~ 213 (332)
T PRK06425 135 LGNLIS-RDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMK 213 (332)
T ss_pred cCCccC-HHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHH
Confidence 565544 444999999999999999999999988 3331111111 122233559999999 9999999999999998
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+.... .++..+.+++++.. ..+.-. .++.++.++++.+++.+.|+++ +........|+++|+.+.
T Consensus 214 ~l~~~~-----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~~~~~~g~f~~~~~~--- 280 (332)
T PRK06425 214 ISRKIT-----EPWSVCDPAIDFIR-SIDLDYVAKHSLDIMENERSYLINNLEAM----GFRAAGDPSANFITFMIP--- 280 (332)
T ss_pred HHHHcC-----CCCccCHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHC----CCEECCCCCceEEEEEcC---
Confidence 887422 23344444433322 111100 0344566666666666666654 332222345788888763
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------cceeeecCCCHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
+..++.+.|.++||.+.++.. +.+|+++. +.++.++++++|++++
T Consensus 281 -------------~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 281 -------------DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR-RRSFNIKLVNALRNFL 331 (332)
T ss_pred -------------CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 126788999999999998742 35788866 6789999999999875
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=205.74 Aligned_cols=319 Identities=17% Similarity=0.172 Sum_probs=208.7
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
.++|+..+. +++| .++.+++++.+.+.....| +..-..++.+.+++.++ .+++|++++|+++++..++... .
T Consensus 23 ~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y--~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~--~ 95 (352)
T PRK03321 23 GAIKLSSNE--TPFG-PLPSVRAAIARAAAGVNRY--PDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQAT--A 95 (352)
T ss_pred cceeccCCC--CCCC-CCHHHHHHHHHHHHhcCcC--CCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHh--c
Confidence 478888874 3343 5678999998887653333 33344566666666665 6779999999999888877642 3
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
.+++.|++..++|.. +.......|..+..++.....+. |++.+++.++. ++++++++.++|+
T Consensus 96 ~~gd~Vli~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~--------------~~~~l~~~~~~---~~~~v~l~~p~NP 157 (352)
T PRK03321 96 GPGDEVIFAWRSFEA-YPILVQVAGATPVQVPLTPDHTH--------------DLDAMAAAITD---RTRLIFVCNPNNP 157 (352)
T ss_pred CCCCEEEeCCCCHHH-HHHHHHHcCCEEEEccCCCCCCC--------------CHHHHHHhhcc---CCCEEEEeCCCCC
Confidence 456778887777753 22233334444333332211111 78888888763 4556666556667
Q ss_pred CCccCCCHHHHHHHHHHHHH--hCCEEEEecccccc-ccccC-ccccccCCCcc---hhhhhhhcc-CCcccccccccHH
Q 015230 196 SGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYG-GAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~~-~~~~~~~~~~d---~~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
+|.+.+ .++|.++|++ +++++|+||+|.+| ..+.. .........++ +.||||.|+ +|+|+||++++++
T Consensus 158 tG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~ 233 (352)
T PRK03321 158 TGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPE 233 (352)
T ss_pred cCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHH
Confidence 788877 6677777776 69999999999877 43321 11111111223 348999998 7999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
+++.+... ...++.+.+++.++.++++.... .+..++..+....+.+.|++ .++.. ....|+++|+.+.
T Consensus 234 ~~~~~~~~-----~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~----~~~~~-~~~~g~~i~i~l~ 303 (352)
T PRK03321 234 VIAALRKV-----AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRA----AGWTV-PPSQANFVWLPLG 303 (352)
T ss_pred HHHHHHHh-----cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCCcc-CCCCCCEEEEeCC
Confidence 99988742 23567788888888777752221 22222333333444444443 23322 2345888888773
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
. ...++.+.|.++||.+.+.+.+.+|+.+ .+.+++++++++|++++..
T Consensus 304 ~---------------~~~~~~~~l~~~gI~v~~~~~~~iRi~~-~~~~~~~~~~~al~~~~~~ 351 (352)
T PRK03321 304 E---------------RTADFAAAAAEAGVVVRPFAGEGVRVTI-GAPEENDAFLRAARAWRAG 351 (352)
T ss_pred C---------------CHHHHHHHHHHCCEEEEccCCCcEEEee-CCHHHHHHHHHHHHHHhcc
Confidence 1 1257888999999999987656689886 4889999999999988754
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=211.26 Aligned_cols=334 Identities=13% Similarity=0.095 Sum_probs=208.5
Q ss_pred CEEEeccCCccccccCC-CcHHHHHHHHHHH----HcC--CCC---CCCCHHHHHHHHHHHhhCC---CCCEEE--EeCC
Q 015230 36 NEYIDYVGSWGPAIIGH-ADDQVLAALGETM----KKG--TSF---GAPCLLENVLAEMVISAVP---SIEMVR--FVNS 100 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l----~~~--~~~---~~~~~~~~~l~~~l~~~~~---~~~~v~--~~~~ 100 (411)
...+|+..+ .+... .++...+++.+++ ... ..| .+..++++++++++....+ .+++|+ .|+|
T Consensus 29 ~~~i~l~~g---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G 105 (404)
T PTZ00376 29 PSKVNLGIG---AYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALS 105 (404)
T ss_pred cccEecccc---eeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccC
Confidence 466898888 32112 2223334444443 211 223 2447888999998866542 567888 4889
Q ss_pred hHHHHHHHHHHHHhc-cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 101 GTEACMGVLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 101 g~~a~~~al~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
+++|+..++.+.+.+ .+++.|++.+|+|++. .......|..+..++... ..++ |++.+++.+
T Consensus 106 ~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~-~~~~~~~G~~~~~v~l~~~~~~~~--------------d~~~l~~~~ 170 (404)
T PTZ00376 106 GTGALRLGFEFLKRFLPAGTTVYVSNPTWPNH-VNIFKSAGLNVKEYRYYDPKTKGL--------------DFDGMLEDL 170 (404)
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEcCCCchhH-HHHHHHcCCceeeccccCcccCCc--------------CHHHHHHHH
Confidence 999999988654333 5678899999999865 445556666555544311 1222 889999988
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---C---cccccc-CCCcchhhh
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---G---GAQEYF-GVTPDLTTL 249 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~---~~~~~~-~~~~d~~~~ 249 (411)
++...+.++++++..+|++|.... ++.+++|.++|++|+++||+||+|.+| ..+. . ...... .....+.||
T Consensus 171 ~~~~~~~~~~~~~~p~NPTG~~~s-~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~Sf 249 (404)
T PTZ00376 171 RTAPNGSVVLLHACAHNPTGVDPT-EEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSF 249 (404)
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeC
Confidence 754333455555555555665554 455999999999999999999999887 4221 0 111111 112335589
Q ss_pred hhhcc-CCcccccc---cccHHHHHHhcCCCCcccccCC-CCCHHHHHHHHHHHHHHh-------c-CChHHHHHHHHHH
Q 015230 250 GKIIG-GGLPVGAY---GGRRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLK-------E-PGTYEYLNKITGE 316 (411)
Q Consensus 250 sK~~~-~G~~~g~~---~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~a~~~~~l~~~~-------~-~~~~~~~~~~~~~ 316 (411)
||.++ +|+|+||+ ++++++++.+..........++ +.+.+++.++.++++.-. . ++.+++++++.+.
T Consensus 250 SK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 329 (404)
T PTZ00376 250 SKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQL 329 (404)
T ss_pred CCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 89999998 5677655543210000011122 345677777777664211 1 2334556677777
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCCcceeeecC-CCH
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFEAGFTSLA-HSS 394 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~~~~~~~-~t~ 394 (411)
+.+.|++......+.......|+++|+.+. .++++.|.++ ||.+.|++ |++++ .+.
T Consensus 330 l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~------------------~~~~~~L~~~~~v~v~p~~----Ris~~~~~~ 387 (404)
T PTZ00376 330 LYDELKALGSPGDWEHIINQIGMFSFTGLT------------------KEQVERLIEKYHIYLLDNG----RISVAGLTS 387 (404)
T ss_pred HHHHHHhcCCCCcccccccCceEEEecCCC------------------HHHHHHHHHhCCEeecCCC----eEEEeccCH
Confidence 777776652110111122445778888662 3567777766 99999984 88775 899
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
+++++++++|++++..
T Consensus 388 ~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 388 KNVDYVAEAIHDVVRN 403 (404)
T ss_pred HhHHHHHHHHHHHHhc
Confidence 9999999999998764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=203.02 Aligned_cols=329 Identities=14% Similarity=0.123 Sum_probs=216.2
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
+..++||..+ ++.-..++.+.+++.+.++.. ..| .+..++++.+++++.+.++ .++++++|+|++++
T Consensus 32 ~~~~~~l~~g---~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~a 108 (394)
T PRK06836 32 ADNVFDFSLG---NPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGA 108 (394)
T ss_pred CCCeEEecCc---CCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHH
Confidence 3467898777 332225678888888776642 112 2346677888888877653 57899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+..+++.. ..+++.|++.+++|... .......|..+..++.... .++ |++++++.++. +
T Consensus 109 l~~~~~~l--~~~gd~Vli~~p~~~~~-~~~~~~~g~~v~~v~~~~~~~~~--------------d~~~l~~~~~~---~ 168 (394)
T PRK06836 109 LNVALKAI--LNPGDEVIVFAPYFVEY-RFYVDNHGGKLVVVPTDTDTFQP--------------DLDALEAAITP---K 168 (394)
T ss_pred HHHHHHHh--cCCCCEEEEcCCCCccH-HHHHHHcCCEEEEEecCCccCcC--------------CHHHHHhhcCc---C
Confidence 99988743 34567888888888764 3333444555555443211 122 88999988863 4
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHH------hCCEEEEecccccc-ccccC--ccccccCCCcchhhhhhhcc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKIIG 254 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~------~~~~li~De~~~g~-~~g~~--~~~~~~~~~~d~~~~sK~~~ 254 (411)
+++++++..+|++|...+.++ +++|.++|++ |++++|+||+|.++ ..+.. .....++...-+.||||.++
T Consensus 169 ~~~v~~~~p~NPtG~~~~~~~-~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 247 (394)
T PRK06836 169 TKAVIINSPNNPTGVVYSEET-LKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLS 247 (394)
T ss_pred ceEEEEeCCCCCCCcCCCHHH-HHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhcc
Confidence 666666666666777665444 9999999999 89999999999887 43321 11112222233558999999
Q ss_pred -CCcccccccccHHHHHH------hcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 255 -GGLPVGAYGGRRDIMEM------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 255 -~G~~~g~~~~~~~~~~~------~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
+|+|+||+++++++.+. +..... .......+.+.+.++...++ +...++.++++.+.+.+.|++.
T Consensus 248 ~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~l~~~L~~~--- 319 (394)
T PRK06836 248 LPGERIGYIAVNPEMEDADDLVAALVFANR--ILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDLLYDGLTEL--- 319 (394)
T ss_pred CcceeeEEEecCHHHhhhHHHHHHHHHHhh--ccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHhC---
Confidence 89999999888765321 110000 01123455666666655543 2223445666666666666553
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITA 403 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~ 403 (411)
++.......|+++|+.+... +..++.+.|.++||.+.++. .+.+|++++.+++++++++++
T Consensus 320 -g~~~~~~~gg~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~ 384 (394)
T PRK06836 320 -GFECVKPQGAFYLFPKSPEE--------------DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPA 384 (394)
T ss_pred -CCEeecCCceEEEEEeCCCC--------------CHHHHHHHHHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHH
Confidence 43333344577888866321 12567788899999999984 245899888899999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 385 l~~~l~~ 391 (394)
T PRK06836 385 FEKLAKE 391 (394)
T ss_pred HHHHHHH
Confidence 9998864
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=208.03 Aligned_cols=307 Identities=13% Similarity=0.067 Sum_probs=191.5
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC
Q 015230 73 APCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 147 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (411)
+..++++++++++.+..+ .+++|++|+|+++|++.++... ..+++.|++.+|.|.+.........|..+..++
T Consensus 95 G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l--~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~ 172 (496)
T PLN02376 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCL--ADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVP 172 (496)
T ss_pred CcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHh--CCCCCEEEECCCCccchHHHHHhhCCCEEEEEe
Confidence 347889999999987643 5789999999999999988742 345678888888888754333223455444444
Q ss_pred CCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 148 LPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
.....++.. |++.+++.+++ ...+++++++...+|++|.+.+ .+.+++|.++|++|+++||+||
T Consensus 173 ~~~~~~~~~------------~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s-~e~l~~L~~~a~~~~i~lI~DE 239 (496)
T PLN02376 173 CSSSDNFKL------------TVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLD-KDTLTNLVRFVTRKNIHLVVDE 239 (496)
T ss_pred CCCCccCcC------------CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCC-HHHHHHHHHHHHHcCCEEEEEc
Confidence 321111111 77888766432 1235665554444555665544 4559999999999999999999
Q ss_pred ccccc-ccccCc-c-cccc---C---CCcc----hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHH
Q 015230 225 VMTGF-RLAYGG-A-QEYF---G---VTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPL 289 (411)
Q Consensus 225 ~~~g~-~~g~~~-~-~~~~---~---~~~d----~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~ 289 (411)
+|.++ ..+..+ . .... + ..++ +.||||.|+ +|+|+||+++ ++.+.+.+.... .....+.+
T Consensus 240 iY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~-----~~~~vs~~ 314 (496)
T PLN02376 240 IYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS-----SFGLVSSQ 314 (496)
T ss_pred CccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh-----hcCCCCHH
Confidence 99876 433211 1 1110 1 1223 348999998 8999999987 455655543211 12234566
Q ss_pred HHHHHHHHHHHHhc-C----ChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHH
Q 015230 290 AMTAGIHTLKRLKE-P----GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364 (411)
Q Consensus 290 ~~a~~~~~l~~~~~-~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (411)
++.++.+.++.-.- + +.+++++++.+.+.+.|++ .++.......|+++|+++....... ...+..
T Consensus 315 ~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~----~gi~~~~~~aG~flwi~l~~~~~~~------~~~~~e 384 (496)
T PLN02376 315 TQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKK----ADIACLTSNAGLFAWMDLRHLLRDR------NSFESE 384 (496)
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCcccCCCceEEEEEEchhhhccC------CchhHH
Confidence 77766666532110 1 2233344444444444443 3443333456899999985321000 011123
Q ss_pred HHHHHHHHHc-CeEeccCCC------cceeeecC-CCHHHHHHHHHHHHHHHH
Q 015230 365 ARFYRGMLEE-GVYFAPSQF------EAGFTSLA-HSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 365 ~~~~~~l~~~-Gi~v~~~~~------~~~~~~~~-~t~~~i~~~i~~l~~~~~ 409 (411)
.++.+.+.++ ||.+.|+.. +.+|+++. .+++++++++++|.+++.
T Consensus 385 ~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 385 IELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVS 437 (496)
T ss_pred HHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 5677777765 999999742 35899887 588999999999999875
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=207.91 Aligned_cols=340 Identities=13% Similarity=0.109 Sum_probs=207.3
Q ss_pred CEEEeccCCccccccCCCc--HHHHHHHHHHHHcC------CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCh
Q 015230 36 NEYIDYVGSWGPAIIGHAD--DQVLAALGETMKKG------TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSG 101 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~--~~v~~a~~~~l~~~------~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g 101 (411)
..++||..+ ++.-... +.+.+++.+.+... ..|+ +..++++.+++++.+.++ .+++|++|+|+
T Consensus 30 ~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga 106 (416)
T PRK09440 30 PGAIMLGGG---NPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGS 106 (416)
T ss_pred CCceeccCC---CCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCh
Confidence 346888877 4432222 35666666665431 1232 346788999999987654 67899999999
Q ss_pred HHHHHHHHHHHHhc---cCCcEEEE-EeCCcCCCchhhhhhc---CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 102 TEACMGVLRLARAF---TGRERIIK-FEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 102 ~~a~~~al~~~~~~---~~~~~vi~-~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
++++..++++.... ..++.|++ .+++|++....+.... +.+....+.+. ..+ .+. -|++.++
T Consensus 107 ~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~---~d~~~l~ 175 (416)
T PRK09440 107 QSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPE-GQF-------KYH---VDFEHLH 175 (416)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccc-ccc-------ccC---CCHHHcc
Confidence 99999988753211 12467888 6999987544222111 11111111110 000 000 1677776
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCc-cc-c-ccCCCcchhhhhh
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG-AQ-E-YFGVTPDLTTLGK 251 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~-~~-~-~~~~~~d~~~~sK 251 (411)
+. .+++++++...+|++|.+.+ .+.+++|.++|++|+++||+||+|..+.....+ .. . ..+....+.||||
T Consensus 176 --~~---~~~~~i~l~~P~NPTG~~~s-~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK 249 (416)
T PRK09440 176 --ID---EDTGAICVSRPTNPTGNVLT-DEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSK 249 (416)
T ss_pred --cC---CCceEEEEecCCCCCCccCC-HHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEecccc
Confidence 22 24455544444556666654 455999999999999999999999743111100 00 0 0122233569999
Q ss_pred hccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHH
Q 015230 252 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 252 ~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
...+|+|+||+++++++++.+.... .....+.+.+++.++.++++.-.. +.++..++++.+.+++.|++...
T Consensus 250 ~~~pGlRiG~~i~~~~l~~~~~~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~ 326 (416)
T PRK09440 250 LGLPGVRCGIVIADEEIIEALSNMN---GIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLP 326 (416)
T ss_pred cCCCcceEEEEeCCHHHHHHHHHHH---HHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7447999999999999988876422 222345677888887777642111 11334455555666666655432
Q ss_pred hcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------------cceeeecCCC
Q 015230 327 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------EAGFTSLAHS 393 (411)
Q Consensus 327 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------------~~~~~~~~~t 393 (411)
..++.......|+++|+++.... ....++.+.|.++||.+.|+.. +.+|++++.+
T Consensus 327 ~~~~~~~~p~gg~fiw~~~~~~~------------~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~ 394 (416)
T PRK09440 327 DEPCLIHKPEGAIFLWLWFKDLP------------ITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQD 394 (416)
T ss_pred cCCeEEecCCCceEEEEECCCCC------------CCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecCC
Confidence 22222223345889999884311 1125678888899999998631 2589988778
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015230 394 SDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~~ 410 (411)
++++++++++|.+++++
T Consensus 395 ~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 395 DEEIEKGIAILAEEVEK 411 (416)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=204.73 Aligned_cols=318 Identities=17% Similarity=0.144 Sum_probs=203.7
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
+.++++..|. ++++ .+|.+++++.+.+.....| +.....++.+.+++.++ .+++|++|+|+++++..++...
T Consensus 43 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l-- 115 (370)
T PRK09105 43 EGAVFLNANE--CPLG-PSPAARDAAARSAALSGRY--DLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF-- 115 (370)
T ss_pred CCcEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH--
Confidence 4467777763 3444 6888999998887653333 33336677778888777 7899999999999999998743
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
..+++.|++.+++|..... .....|.++..++....... |++++++.. ++...+++++| +|
T Consensus 116 ~~~gd~Vli~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~---~~~~~v~l~nP-~N 176 (370)
T PRK09105 116 TSPTAGLVTADPTYEAGWR-AADAQGAPVAKVPLRADGAH--------------DVKAMLAAD---PNAGLIYICNP-NN 176 (370)
T ss_pred cCCCCEEEEeCCChHHHHH-HHHHcCCeEEEecCCCCCCC--------------CHHHHHhcC---CCCCEEEEeCC-CC
Confidence 3456789999988876533 34444554444333211111 777776542 22333444555 55
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcc---hhhhhhhcc-CCcccccccccHHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d---~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
++|.+.+ .+.+++|.+.|+ +++++|+||+|..|..+. ...+..+..++ +.||||.++ +|+|+||+++++++++
T Consensus 177 PTG~~~~-~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~ 253 (370)
T PRK09105 177 PTGTVTP-RADIEWLLANKP-AGSVLLVDEAYIHFSDAP-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLA 253 (370)
T ss_pred CCCcCcC-HHHHHHHHHhCC-CCcEEEEECchHHhccCc-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHH
Confidence 6666654 444777777653 589999999998661111 11111111223 458999998 7999999999999998
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+... ..+..+.+++.++.++++.... ++.+++++++.+++.+.|++. ++.. ..+.|.++++++..
T Consensus 254 ~l~~~------~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~-~~~~~~f~~~~~~~-- 320 (370)
T PRK09105 254 KLARF------GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK----GYKC-TPSQANCFMVDVKR-- 320 (370)
T ss_pred HHHhc------CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCc-CCCCCcEEEEeCCC--
Confidence 88742 2344666777777766642111 344455666666666666653 3221 23446666665521
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccC---CCcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---QFEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---~~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+..++.+.|.++||.+... ..+.+|+++. ++++++++++.|+++++
T Consensus 321 -------------~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~-~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 321 -------------PAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG-SEEEMAAFRSAFAKVMR 369 (370)
T ss_pred -------------CHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHhh
Confidence 1267899999999999422 1346888866 67889999999988763
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=200.78 Aligned_cols=321 Identities=11% Similarity=0.099 Sum_probs=202.4
Q ss_pred EeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-C-CC--CCCHHHHHHHHHHHhhCCCCCEEEEe
Q 015230 23 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-S-FG--APCLLENVLAEMVISAVPSIEMVRFV 98 (411)
Q Consensus 23 ~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~-~~--~~~~~~~~l~~~l~~~~~~~~~v~~~ 98 (411)
.+++|.+.+...|+.++|+..|. ++++ .+|.+++++.+++.... . |. +..++++.+++++.+..-.+++|++|
T Consensus 6 ~~~~~~~~~~~~~~~~i~l~~~~--~~~~-~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it 82 (335)
T PRK14808 6 LIAKRAYPYETEKRDRTYLALNE--NPFP-FPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVG 82 (335)
T ss_pred hhhccCcCCCCCCCceeEecCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEc
Confidence 45667777767888999998884 4444 77889999988775422 1 21 22444555555554332258899999
Q ss_pred CChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH
Q 015230 99 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 178 (411)
Q Consensus 99 ~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 178 (411)
+|+++++..+++. + +.|++.+++|.... ......|..+..++... ... . +.. .++
T Consensus 83 ~Ga~~~i~~~~~~---~---d~v~v~~P~y~~~~-~~~~~~g~~~~~v~~~~--~~~---------~---~~~----~~~ 137 (335)
T PRK14808 83 NGADEIIYVMMLM---F---DRSVFFPPTYSCYR-IFAKAVGAKFLEVPLTK--DLR---------I---PEV----NVG 137 (335)
T ss_pred CCHHHHHHHHHHH---h---CcEEECCCCHHHHH-HHHHHcCCeEEEecCCC--cCC---------C---Chh----Hcc
Confidence 9999999999874 3 56888899888543 34444454444433211 110 0 111 122
Q ss_pred cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CC
Q 015230 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 179 ~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G 256 (411)
.++++++...+|++|...+ .+++.+++ +++++||+||+|.+| ...............-+.||||.++ +|
T Consensus 138 ----~~~~i~i~nP~NPTG~~~s----~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~G 208 (335)
T PRK14808 138 ----EGDVVFIPNPNNPTGHVFE----REEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAA 208 (335)
T ss_pred ----CCCEEEEeCCCCCCCCCcC----HHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcc
Confidence 2344444444445565555 45555666 589999999999877 2111111112222233568999999 89
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
+|+||+++++++++.+.... .+++.+.+++.++.++++..+. ++..+.++++.+++.+.|+++ ++. ...
T Consensus 209 lRvG~~v~~~~~~~~l~~~~-----~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~-~~~ 278 (335)
T PRK14808 209 QRIGYVVSSEKFIDAYNRVR-----LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYR-ITD 278 (335)
T ss_pred cceEEEEeCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC----CCE-ECC
Confidence 99999999999998886422 2455677788877777653221 333344455555555555543 432 223
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
+.|.++|+.+... +..++.+.|.++||.|.... ..+|++.. +.++.+++++.|++
T Consensus 279 ~~g~f~~~~l~~~--------------~~~~~~~~l~~~Gi~V~~~~-~~~Risi~-~~~~~~~~~~~l~~ 333 (335)
T PRK14808 279 SRGNFVFIFMEKE--------------EKERLLEHLRAKNIAVRSFR-EGVRITIG-KREENDMILKELEV 333 (335)
T ss_pred CCCeEEEEeCCCc--------------cHHHHHHHHHHCCeEEEECC-CCeEEecC-CHHHHHHHHHHHHh
Confidence 4688889877421 12678899999999999753 56888854 66889999999875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=204.33 Aligned_cols=306 Identities=13% Similarity=0.112 Sum_probs=190.7
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC
Q 015230 73 APCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 147 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (411)
+..++++++++++.+.++ .+++|++|+|+++|++.++.. .+.+++.|++..|.|++.........|..+..++
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~--l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~ 173 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFI--LADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIH 173 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHH--hCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEe
Confidence 457889999999987653 578999999999999997763 2356678888888887654333223444444333
Q ss_pred CCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 148 LPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
.....++. -|++++++++++ .+.+++++++...+|++|... +++.+++|.++|++|+++||+||
T Consensus 174 ~~~~~~f~------------~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~-s~e~l~~l~~~~~~~~i~lI~DE 240 (447)
T PLN02607 174 CDSSNNFQ------------VTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATV-QRSVLEDILDFVVRKNIHLVSDE 240 (447)
T ss_pred CCCCCCCc------------CCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCCEEEEec
Confidence 22112221 178889888864 123555555443344455443 45569999999999999999999
Q ss_pred ccccc-ccccCc--ccc---ccCC-C-cc----hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCC-CCCHH
Q 015230 225 VMTGF-RLAYGG--AQE---YFGV-T-PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTL-SGNPL 289 (411)
Q Consensus 225 ~~~g~-~~g~~~--~~~---~~~~-~-~d----~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~-~~~~~ 289 (411)
+|+++ ..+..+ ... ..+. . ++ +.+|||.|+ +|+|+||+++ ++++++.+... ..+ ..+.+
T Consensus 241 iYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~------~~~~~~s~~ 314 (447)
T PLN02607 241 IYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM------SSFTLVSSQ 314 (447)
T ss_pred cccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH------hhcCCCCHH
Confidence 99865 322111 111 1110 1 22 348999998 8999999987 67776666521 122 23556
Q ss_pred HHHHHHHHHHHH--h-c--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHH
Q 015230 290 AMTAGIHTLKRL--K-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364 (411)
Q Consensus 290 ~~a~~~~~l~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (411)
++.++.+.++.- . . ++.+++++++.+.+.+.|++ .++.......|+++|+++.+.... +..+..
T Consensus 315 ~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~----~gi~~~~~~ag~fvw~~L~~~~~~-------~~~~~e 383 (447)
T PLN02607 315 TQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR----AGIECLKGNAGLFCWMNLSPLLET-------PTREGE 383 (447)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCcccCCeeEEEEEEchHhhcC-------CCchhH
Confidence 666655554310 0 0 12233344444444444444 344433455689999998532100 111222
Q ss_pred HHHHHHHH-HcCeEeccCC------CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 365 ARFYRGML-EEGVYFAPSQ------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 365 ~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
.++.+.+. ++||.+.||. .+.+|+++.. +++++++++++|.+++.+
T Consensus 384 ~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 384 LALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred HHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 46666665 5699999984 2358998885 899999999999988753
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=203.46 Aligned_cols=333 Identities=15% Similarity=0.126 Sum_probs=211.7
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhC-C-CCCEEEEeCChHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAV-P-SIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~-~-~~~~v~~~~~g~~a~~~al 109 (411)
|..++||..+. +....++.+.+++.+.......|. +..++++.+++++...- + .+++|++|+|+++|+..++
T Consensus 29 ~~~~i~l~~~~---~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~ 105 (397)
T PRK07568 29 GIKVYHLNIGQ---PDIKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAM 105 (397)
T ss_pred CCCEEEecCCC---CCCCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHH
Confidence 45578888773 322246788888877654432332 34667788888776321 2 5789999999999999988
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~ 189 (411)
... ..+++.|++.++.|.. +.......|..+..++.....++. ..+++++++.++. +++++++
T Consensus 106 ~~l--~~~gd~Vl~~~p~y~~-~~~~~~~~g~~~~~v~~~~~~g~~-----------~~~~~~l~~~~~~---~~~~v~i 168 (397)
T PRK07568 106 MAI--CDPGDEILVPEPFYAN-YNGFATSAGVKIVPVTTKIEEGFH-----------LPSKEEIEKLITP---KTKAILI 168 (397)
T ss_pred HHh--cCCCCEEEEecCCCcc-HHHHHHHcCCEEEEeecCcccCCC-----------CCCHHHHHHhcCc---cceEEEE
Confidence 743 3456788888887764 333344445444443322111210 0157888887752 4555554
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccccccCCC---cchhhhhhhcc-CCcccccc
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVT---PDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~~~~~~~---~d~~~~sK~~~-~G~~~g~~ 262 (411)
..++|++|.+.+ .+.+++|.++|+++++++|+||+|.+| ..+.. ......+.. ..+.||||.++ +|+|+||+
T Consensus 169 ~~p~NPtG~~~~-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~ 247 (397)
T PRK07568 169 SNPGNPTGVVYT-KEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCL 247 (397)
T ss_pred ECCCCCCCccCC-HHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEE
Confidence 444555666554 444999999999999999999999988 44421 111111212 22448999999 69999999
Q ss_pred cc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeec
Q 015230 263 GG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYIS 338 (411)
Q Consensus 263 ~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~g 338 (411)
++ ++++++.+.... . .+++.+.+++.++.++++..+. +++++.++++.+.+.+.|+++ +... .....|
T Consensus 248 ~~~~~~~~~~~~~~~---~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~p~g~ 319 (397)
T PRK07568 248 ISKNKELIAAAMKLC---Q-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKI----PGVVCEKPKGA 319 (397)
T ss_pred ecCCHHHHHHHHHHh---h-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCceecCCCcc
Confidence 87 467777654211 1 1356677777777777652211 345555666666666666553 2222 223346
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH------cCeEeccCC---------CcceeeecCCCHHHHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE------EGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITA 403 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~Gi~v~~~~---------~~~~~~~~~~t~~~i~~~i~~ 403 (411)
+++|+.+... +..++.+.+.+ +||.+.|+. .+.+|++++.+++++++++++
T Consensus 320 ~~~~~~l~~~--------------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~ 385 (397)
T PRK07568 320 FYIIAKLPVD--------------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEI 385 (397)
T ss_pred eEEEEecCCC--------------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHH
Confidence 6788877421 12466676654 599999863 135899888889999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|.+++++
T Consensus 386 l~~~l~~ 392 (397)
T PRK07568 386 LKEALEK 392 (397)
T ss_pred HHHHHHH
Confidence 9998865
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=200.57 Aligned_cols=311 Identities=16% Similarity=0.152 Sum_probs=197.1
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
.+..++||..|. ++++ .+|.+.+++.+++.......|+..-...+.+.+++.++ .+++|++|+|+++++..+++.
T Consensus 16 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~- 91 (337)
T PRK03967 16 EGNYRIWLDKNE--NPFD-LPEELKEEIFEELKRVPFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKL- 91 (337)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHhhcCccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHH-
Confidence 345678988884 3443 66889999988886422222333334556666666665 789999999999999887763
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
+ .++.|++..++|.. +.......|..+..++.....++ |++.+++.+. +....++++|
T Consensus 92 --~-~gd~V~v~~P~y~~-~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~---~~~~v~~~~P- 149 (337)
T PRK03967 92 --F-EGKHIVITPPTFGM-YSFYAKLNGIPVIDVPLKEDFTI--------------DGERIAEKAK---NASAVFICSP- 149 (337)
T ss_pred --h-CCCeEEEeCCChHH-HHHHHHHcCCeEEEeecCCCCCc--------------CHHHHHHhcc---CCCEEEEeCC-
Confidence 3 46889999999874 33333444554444333211111 7788876543 2233444555
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
+|++|...+ .++|.++++ +++++|+||+|.+| ........+......-+.||||.|+ +|+|+||+++++++++
T Consensus 150 ~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~ 224 (337)
T PRK03967 150 NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIID 224 (337)
T ss_pred CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHH
Confidence 566677766 667777874 79999999999877 2211111111111223458999999 8999999999999988
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+.... ..++.+.+++.++..+++..+. .+.+..+.+....+.+.|++. . ....|+++|+.+
T Consensus 225 ~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~----~~~~~~~~~~~~---- 287 (337)
T PRK03967 225 ALYRIK-----PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY----A----YPSDANFLLLKL---- 287 (337)
T ss_pred HHHhhc-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC----c----CCCCCcEEEEhH----
Confidence 887432 2345677888888777753211 222233334444444444332 1 234577888755
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCC---CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+.+.|.++||.+.++. .+.+|+++. +.++.+++++.|+++..
T Consensus 288 ----------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~-~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 288 ----------------DAYDYLLENGIVVRKLSGRLEGHIRVTVG-KREENDEFIKALKEIKE 333 (337)
T ss_pred ----------------HHHHHHHHCCEEEEeCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHH
Confidence 25788889999997653 345788866 56778888888877654
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=201.81 Aligned_cols=322 Identities=15% Similarity=0.095 Sum_probs=199.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
..++||..+. ++++ .++.+.+++.+.+.....|+.+ ....+.+.+++.++ .+++|++|+|+++++..+++.
T Consensus 22 ~~~i~l~~~~--n~~~-~~~~~~~a~~~~~~~~~~Y~~~--~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~--- 93 (360)
T PRK07392 22 DAILDFSASI--NPLG-PPESVIAAIQSALSALRHYPDP--DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRE--- 93 (360)
T ss_pred ccEEEeCCcC--CCCC-CCHHHHHHHHHHHHHhhcCCCc--CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH---
Confidence 4678988774 4544 7788999988877663333322 23455566666556 788999999999999988873
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
+.+++.|++.+|+|.... ......|..+..++.....+... ...+++++++.. +.....++++| +|
T Consensus 94 l~~g~~vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~~~l~nP-~N 159 (360)
T PRK07392 94 LAQLRAVYLITPAFGDYR-RALRAFGATVKELPLPLDQPSPG---------LTLRLQTLPPQL---TPNDGLLLNNP-HN 159 (360)
T ss_pred hCCCCeEEEECCCcHHHH-HHHHHcCCeEEEEecccccCCcc---------cccCHHHHHHhc---cCCCEEEEeCC-CC
Confidence 335578999999998644 44444555554443322211100 001455554332 22333444555 55
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc---cccCCCcchhhhhhhcc-CCcccccccccHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 268 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~---~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~ 268 (411)
++|...+ .++|.++++++++ +|+||+|.+| ..+.. ... +......-+.||||.++ +|+|+||+++++++
T Consensus 160 PTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~ 234 (360)
T PRK07392 160 PTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDR 234 (360)
T ss_pred CCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHH
Confidence 5676666 6788888999985 6669999988 44421 111 11112233458999999 99999999999999
Q ss_pred HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEec
Q 015230 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347 (411)
Q Consensus 269 ~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 347 (411)
++.+.... ..++.+.+++.++.++++...- +..++.++++.+++.+.|+.+ +......+.|+++|+++..
T Consensus 235 ~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~fl~~~~~~ 305 (360)
T PRK07392 235 LQRWQQWR-----DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASL----PGLTPLPSAANFLLVQSQG 305 (360)
T ss_pred HHHHHhhC-----CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEECCCCCCEEEEEcCC
Confidence 88876322 2466788888888877753111 233344555555555555443 3222233557788876632
Q ss_pred CCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCC------cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~------~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+..++.+.+ .++||.+.|+.. +.+|+++... ++.+++.+.|+++++
T Consensus 306 ---------------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~-~~~~~l~~al~~~~~ 358 (360)
T PRK07392 306 ---------------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTE-AENQRLLEALAAILA 358 (360)
T ss_pred ---------------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHhh
Confidence 125677665 567999998842 3578887653 445666666666554
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=205.75 Aligned_cols=309 Identities=13% Similarity=0.085 Sum_probs=197.3
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
..+++.+|. +++| .++.+ .... ...|++....++.+++++.++ .+++|++|+|+++++..+++.. .
T Consensus 29 ~~~~l~~Ne--np~~-~~~~~------~~~~--~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~--~ 95 (351)
T PRK01688 29 GDVWLNANE--YPTA-VEFQL------TQQT--LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAF--C 95 (351)
T ss_pred CceEecCCC--CCCC-CChhh------cccc--cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh--c
Confidence 358888876 6666 33332 1111 233565556899999999988 8899999999999999998742 2
Q ss_pred cC-CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 116 TG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 116 ~~-~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
.+ ++.|++.+++|... .......|..+..++....... |++++++.++ +++++++...+|
T Consensus 96 ~~g~~~vli~~P~y~~y-~~~~~~~G~~~~~v~~~~~~~~--------------d~~~l~~~~~----~~~lv~l~nPnN 156 (351)
T PRK01688 96 EPGKDAILYCPPTYGMY-SVSAETIGVEIRTVPTLDNWQL--------------DLPAIADNLD----GVKVVYVCSPNN 156 (351)
T ss_pred CCCCCEEEEcCCCHHHH-HHHHHHcCCEEEEeecCCCCCC--------------CHHHHHHhcc----CCcEEEEeCCCC
Confidence 23 36788888998743 3334445554444333211111 7888887763 344444444455
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccccCCCcchhhhhhhcc-CCcccccccccHHHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~ 271 (411)
++|...+ .+.+++|.+.|++ +++||+||+|.+| ...... .....+...-+.||||+++ +|+|+||+++++++++.
T Consensus 157 PTG~~~~-~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~ 234 (351)
T PRK01688 157 PTGNLIN-PQDLRTLLELTRG-KAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINL 234 (351)
T ss_pred CCCCCCC-HHHHHHHHHhCCC-CcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHH
Confidence 5666655 3337777777765 6889999999887 221111 1111222222459999999 89999999999999988
Q ss_pred hcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc-CChHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeecceEEEEEec
Q 015230 272 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTE 347 (411)
Q Consensus 272 ~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~ 347 (411)
+.+.. ..++.+.+++.++.++++.. +. ++.++.+++..+++.+.|+++ +.. ......++++++.+.+
T Consensus 235 l~~~~-----~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~ps~~nfi~~~~~~ 305 (351)
T PRK01688 235 LLKVI-----APYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEI----PCVEQVFDSETNYILARFTA 305 (351)
T ss_pred HHhcc-----CCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhC----CCCCeECCCCCcEEEEEcCC
Confidence 87422 24556667777776666421 11 233344555555666666543 322 2224457788887631
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----CcceeeecCCCHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~~~~~t~~~i~~~i~~l~ 405 (411)
..++.+.|.++||.+++++ .+.+|+++. +.+++++++++|+
T Consensus 306 ----------------~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~-~~~e~~~l~~al~ 351 (351)
T PRK01688 306 ----------------SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG-TREECQRVIDALR 351 (351)
T ss_pred ----------------HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC-CHHHHHHHHHhhC
Confidence 2678899999999998653 345888866 7899999998873
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=203.80 Aligned_cols=343 Identities=14% Similarity=0.082 Sum_probs=213.3
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.|..++++..+.......+ .++.+++++.+.+.... .|+ +..++++.+++++....+ .++++++|+|+++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~a 108 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQA 108 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHH
Confidence 4678899888832110123 67889999988887632 232 234556777777765433 46799999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.. ..+++.|++..++|... .......|..+..++.....+.. -|++++++.+.. ++
T Consensus 109 l~~~~~~l--~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~---~~ 170 (403)
T TIGR01265 109 IEICIEAL--ANPGANILVPRPGFPLY-DTRAAFSGLEVRLYDLLPEKDWE------------IDLDGLEALADE---KT 170 (403)
T ss_pred HHHHHHHh--CCCCCEEEEeCCCchhH-HHHHHHcCCEEEEecCCcccCCc------------cCHHHHHHHhCc---Cc
Confidence 99999854 24567899988888653 33333444444433321111110 178999887753 34
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc-C--CCcchhhhhhhcc-CCcc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-G--VTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~-~--~~~d~~~~sK~~~-~G~~ 258 (411)
+++++...+|++|...+ .+.+++|.++|+++|+++|+||+|.+| ..+.. .....+ . ....+.||||.++ +|+|
T Consensus 171 ~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 249 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFS-RDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWR 249 (403)
T ss_pred cEEEEecCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcce
Confidence 44444444555666554 333999999999999999999999988 44321 111111 1 1122458999987 7999
Q ss_pred ccccccc--HH-----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-c--CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 259 VGAYGGR--RD-----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 259 ~g~~~~~--~~-----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+||++++ +. +++.+.. +...+++.+.+++.++.++++... . ++.++.++++.+++.+.|+.. .
T Consensus 250 iG~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 322 (403)
T TIGR01265 250 LGWIIIHDPHGIFRDTVLQGLKN----LLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDI---P 322 (403)
T ss_pred EEEEEEeCchhhhHHHHHHHHHH----HhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 9999763 22 3333321 111234567788888877775311 1 344555556655665655543 1
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC----CcceeeecCCCHHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITA 403 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~ 403 (411)
++.......|+++|+++...... ...+..++.+.+ .++||.+.|+. .+.+|+++...++++++++++
T Consensus 323 ~~~~~~p~~g~f~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~ 394 (403)
T TIGR01265 323 GLVCPKPEGAMYLMVKLELELFP--------EIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSR 394 (403)
T ss_pred CceecCCCceeEEEEeccccccC--------CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHH
Confidence 22212344688999988532100 001125676665 57899999974 245799888889999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|.+++++
T Consensus 395 l~~~~~~ 401 (403)
T TIGR01265 395 IKEFCER 401 (403)
T ss_pred HHHHHHh
Confidence 9998865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=201.82 Aligned_cols=321 Identities=16% Similarity=0.160 Sum_probs=205.3
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
+..++||..|. ++++ .++.+.+++.+.......|+.+.. ..+.+.+++.++ .+++|++|+|+++++..++...
T Consensus 35 ~~~~i~l~~~~--~~~~-~~~~~~~al~~~~~~~~~Y~~~~g--~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~- 108 (371)
T PRK05166 35 VPRIAKLGSNE--NPLG-PSPAVRRAFADIAELLRLYPDPQG--RALREAIAARTGVPADRIILGNGSEDLIAVICRAV- 108 (371)
T ss_pred CcceEEcCCCC--CCCC-CCHHHHHHHHHHHHHhhcCCCCcH--HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh-
Confidence 45789999884 4454 677888888776554333332222 367777777776 6789999999999998888742
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..+++.|++..++|+... ......|..+..++.....++ |++++++.++. +++++++...+
T Consensus 109 -~~~gd~vli~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~--------------~~~~l~~~~~~---~~~~v~l~~p~ 169 (371)
T PRK05166 109 -LRPGDRVVTLYPSFPLHE-DYPTMMGARVERVTVTPDLGF--------------DLDALCAAVAR---APRMLMFSNPS 169 (371)
T ss_pred -cCCCCEEEEcCCChHHHH-HHHHHcCCeEEEeecCCCCCC--------------CHHHHHHhhhc---CCCEEEEeCCC
Confidence 345678889888887532 233344444444332211122 78899888864 33555554455
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccccc-CC---Ccchhhhhhhcc-CCccccccc-cc
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-GV---TPDLTTLGKIIG-GGLPVGAYG-GR 265 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~-~~---~~d~~~~sK~~~-~G~~~g~~~-~~ 265 (411)
|++|.+.+ .+.+++|.++|++ ++++|+||+|..| ..+. ....... .. ..-+.||||.++ +|+|+||++ .+
T Consensus 170 NPtG~~~~-~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~ 247 (371)
T PRK05166 170 NPVGSWLT-ADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSD 247 (371)
T ss_pred CCCCCCCC-HHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCC
Confidence 56776665 3337777777764 8899999999877 3221 1111111 11 123458999999 899999975 47
Q ss_pred HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEE
Q 015230 266 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 344 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~ 344 (411)
+++++.+.... ..++.+.+++.++.+++..-.. ++.++.++++.+++.+.|++. ++.. ....|+++|++
T Consensus 248 ~~l~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~-~p~~g~fl~~~ 317 (371)
T PRK05166 248 PELVGLLDRVR-----TPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM----GYRI-APSRANFLFFD 317 (371)
T ss_pred HHHHHHHHHhc-----cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----cCee-CCCcCCEEEEe
Confidence 88887775322 2455677887777766642111 334445555556666666554 4322 34458888887
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
+.. +..++.+.|.++||.+.++. .+.+|+++. +.++.+++++.|++++
T Consensus 318 ~~~---------------~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~-~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 318 ARR---------------PASAVAEALLRQGVIVKPWKQPGFETFIRVSIG-SPEENDHFVAALDKVL 369 (371)
T ss_pred CCC---------------CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHh
Confidence 521 12678899999999999874 335788877 5667888888887664
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=199.77 Aligned_cols=304 Identities=18% Similarity=0.172 Sum_probs=191.5
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
+..+++|..+. ++++. | ..+...+.+.. |++....++.+++++.++ .++++++|+|+++++..+.++
T Consensus 16 ~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-- 83 (330)
T TIGR01140 16 PEDWLDFSTGI--NPLGP--P-VPPIPASAWAR-----YPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-- 83 (330)
T ss_pred hhheeEccccC--CCCCC--C-hhhcchHHHhh-----CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH--
Confidence 34678988886 44443 2 22222222222 222224777777777776 578999999999999886653
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
+.++ +|++.+++|+..... ....|. ++..++ |++++++.+++ ...+++++| +
T Consensus 84 -l~~g-~vl~~~p~y~~~~~~-~~~~g~-------------------~~~~~~--d~~~l~~~~~~---~~~v~i~~p-~ 135 (330)
T TIGR01140 84 -LAPG-RVLVLAPTYSEYARA-WRAAGH-------------------EVVELP--DLDRLPAALEE---LDVLVLCNP-N 135 (330)
T ss_pred -hCCC-eEEEeCCCcHHHHHH-HHHcCC-------------------EEEEeC--CHHHHHhhccc---CCEEEEeCC-C
Confidence 3333 788888888764322 222222 233333 78888887742 234455555 5
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc-cccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~-~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
|++|.+.+ .+.+++|.++|++||+++|+||+|.++ ........ +..+...-+.||||.++ +|+|+||+++++++++
T Consensus 136 NPtG~~~~-~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~ 214 (330)
T TIGR01140 136 NPTGRLIP-PETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLA 214 (330)
T ss_pred CCCCCCCC-HHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHH
Confidence 55666554 555999999999999999999999877 32211111 11111112348999999 7999999999999988
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 350 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 350 (411)
.+.... ..++.+.++++++.+.++ +++..++.+++.+..++.+.+.....+......+.|+++|+.+.+
T Consensus 215 ~l~~~~-----~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~--- 283 (330)
T TIGR01140 215 RLREAL-----GPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVRTPD--- 283 (330)
T ss_pred HHHhcC-----CCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEcCC---
Confidence 887432 245567777777776665 223333333444444444444433345333334567888887632
Q ss_pred CCcchhcccchHHHHHHHHHHHHcCeEeccCCC------cceeeecCCCHHHHHHHHHHH
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAA 404 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~~~~t~~~i~~~i~~l 404 (411)
..++.+.|.++||.+.|+.. +.+|+++....++ ++++.+|
T Consensus 284 -------------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 284 -------------AAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred -------------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence 15788999999999999742 3588888766665 8877765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=202.58 Aligned_cols=327 Identities=16% Similarity=0.178 Sum_probs=207.8
Q ss_pred EEEeccCCccccccCC-CcHHHHHHHHHHHH----cC--CCCCC---CCHHHHHHHHHHHhhCC---CCC-EEEEeCChH
Q 015230 37 EYIDYVGSWGPAIIGH-ADDQVLAALGETMK----KG--TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGT 102 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~----~~--~~~~~---~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~ 102 (411)
+++||.+| ++... .++.+.+++.+..+ .. ..|+. ..++++.+++++.+..+ ..+ .+++++|..
T Consensus 2 ~~I~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~ 78 (363)
T PF00155_consen 2 DVINLGSN---APLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQ 78 (363)
T ss_dssp TEEESSSS---STSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHH
T ss_pred CEEEEECC---CCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccc
Confidence 47899888 55444 55555555544433 12 22221 25556677776664333 467 788888777
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK- 181 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~- 181 (411)
+++..++.+. ...+++.|++.+++|... .......|..+..++.....+. +.|++++++.+++.+
T Consensus 79 ~~~~~~~~~~-~~~~~~~vlv~~P~y~~~-~~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~ 144 (363)
T PF00155_consen 79 AALFLLLRLL-KINPGDTVLVPDPCYPSY-IEAARLLGAEVIPVPLDSENDF------------HLDPEALEEALDELPS 144 (363)
T ss_dssp HHHHHHHHHH-HSSTTSEEEEEESSSTHH-HHHHHHTTSEEEEEEEEETTTT------------EETHHHHHHHHHTSHT
T ss_pred cchhhhhhcc-cccccccceecCCccccc-cccccccCceeeeccccccccc------------cccccccccccccccc
Confidence 7776666542 244678899988888854 3444444543333221101111 228999999999632
Q ss_pred C--cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCc-c-ccccCCCcc---hhhhhhhc
Q 015230 182 G--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG-A-QEYFGVTPD---LTTLGKII 253 (411)
Q Consensus 182 ~--~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~-~-~~~~~~~~d---~~~~sK~~ 253 (411)
+ ++.+++++.++|++|...+ .+.+++|.++|++|++++|+||+|.++..+ ..+ . .......++ +.|+||.+
T Consensus 145 ~~~~~~~v~~~~p~nPtG~~~~-~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~ 223 (363)
T PF00155_consen 145 KGPRPKAVLICNPNNPTGSVLS-LEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF 223 (363)
T ss_dssp TTETEEEEEEESSBTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT
T ss_pred cccccceeeecccccccccccc-cccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccc
Confidence 2 3466666666667776554 444999999999999999999999877222 211 1 111122222 44899999
Q ss_pred c-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh----c-CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 254 G-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK----E-PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 254 ~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
+ .|+|+||+++++++++.+.. ....+..+.+.++++.+.+.... . ++.+++++++.+++.+.|++.
T Consensus 224 g~~GlRvG~i~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 295 (363)
T PF00155_consen 224 GLPGLRVGYIVAPPELIERLRR-----FQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI--- 295 (363)
T ss_dssp TSGGGTEEEEEEEHHHHHHHHH-----HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cccccccccccchhhhhhhhhh-----ccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh---
Confidence 8 79999999999999888873 11233336666666666655332 1 445555666666666666554
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCC----cceeeec-CCCHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTSL-AHSSDDIQHTI 401 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~~-~~t~~~i~~~i 401 (411)
++.......|+++|+.+.. . +..++.+.|.++ ||.+.|+.. +.+|+++ .++++++++++
T Consensus 296 -~~~~~~~~~~~~~~~~~~~-------------~-~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~ 360 (363)
T PF00155_consen 296 -GITVLPPEAGFFLWVRLDP-------------N-DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEAL 360 (363)
T ss_dssp -TSEEEHHSBSSEEEEEESH-------------H-HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHH
T ss_pred -hhheeeccCccEEEEEccc-------------c-hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHH
Confidence 5444444567788887732 1 457888889988 999999643 3588887 88999999999
Q ss_pred HHH
Q 015230 402 TAA 404 (411)
Q Consensus 402 ~~l 404 (411)
++|
T Consensus 361 ~~l 363 (363)
T PF00155_consen 361 ERL 363 (363)
T ss_dssp HHH
T ss_pred hhC
Confidence 986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=205.33 Aligned_cols=337 Identities=14% Similarity=0.107 Sum_probs=199.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC------CCC---CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG------TSF---GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~------~~~---~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a 104 (411)
.+..++|+..+. .+++ .+|.+.+++.+.+.+. ..| .+..++++.+++++.+..-.+++|++|+|++++
T Consensus 31 ~~~~~i~l~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~a 107 (402)
T TIGR03542 31 PSADIIRLGIGD--TTQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCD 107 (402)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHH
Confidence 367789988883 2232 5778889988887753 112 234566777777653321268999999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCC-CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+..++. .+.+++.|++.+|+|.+....+. ..|. ++.. . .+. ...+..++.++-+.+..-+... .+
T Consensus 108 l~~l~~---l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~~---~--~~~----~~~~~~v~~~~~~~~~~~~~~~-~~ 173 (402)
T TIGR03542 108 VFRLQS---LFGSDNTVAVQDPVYPAYVDSNV-MAGRAGVLD---D--DGR----YSKITYLPCTKENNFIPDLPEE-PK 173 (402)
T ss_pred HHHHHH---hcCCCCEEEEeCCCCcchHHHHH-HcCCccccc---c--ccc----cceEEEeecchhhCCCCCcccc-CC
Confidence 987543 34567889999999987544433 3333 1110 0 000 0012222211000000001111 24
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccc-cccc---CCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGA-QEYF---GVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~-~~~~---~~~~d~~~~sK~~~-~G 256 (411)
+++++++..+|++|...+ .+.+++|.++|++|+++||+||+|.+| ..+. ... .... +....+.||||.++ +|
T Consensus 174 ~~~i~l~nP~NPTG~~~s-~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG 252 (402)
T TIGR03542 174 IDIIYLCSPNNPTGTVLT-KEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTG 252 (402)
T ss_pred ceEEEEeCCCCCCCccCC-HHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence 555555544555665544 445999999999999999999999987 3331 111 1111 12233569999998 89
Q ss_pred cccccccccHHHH--------HHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc-CChHHHHHHHHHHHHHHHHHHH
Q 015230 257 LPVGAYGGRRDIM--------EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 257 ~~~g~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~-~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+|+||++++++++ +.+.. .......+.+.+++.++..+++.. .. .+.++.++++.+++.+.|++.
T Consensus 253 lRiG~~i~~~~l~~~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~- 328 (402)
T TIGR03542 253 VRLGWTVVPKELTYADGHSVIQDWER---RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA- 328 (402)
T ss_pred cceEEEEecHHHhhcchhhHHHHHHH---HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999988876 22210 011112245667777766655321 10 223344555555566665543
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQ 398 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~ 398 (411)
+........|+++|+++... .+..++.+.+. ++||.+.|+. .+.+|+++..++++++
T Consensus 329 ---~~~~~~~~~~~f~~v~l~~~-------------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~ 392 (402)
T TIGR03542 329 ---GFKVYGGEHAPYLWVKTPEG-------------ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIV 392 (402)
T ss_pred ---CceecCCCceeEEEEECCCC-------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHH
Confidence 32222223577999988431 11256777776 5699999973 2457888777999999
Q ss_pred HHHHHHHHHH
Q 015230 399 HTITAAEKVL 408 (411)
Q Consensus 399 ~~i~~l~~~~ 408 (411)
+++++|+++|
T Consensus 393 ~~l~~l~~~~ 402 (402)
T TIGR03542 393 EACERIKEAL 402 (402)
T ss_pred HHHHHHHhhC
Confidence 9999998763
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=189.36 Aligned_cols=298 Identities=17% Similarity=0.086 Sum_probs=188.0
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
+...++||..|. ++++ ++.+.+++.++++....|.. ...+.+++++.++ ++|++|+|+++++..++.+
T Consensus 6 ~~~~~i~l~~~~--np~~--p~~~~~a~~~~~~~~~~yp~----~~~l~~~ia~~~~--~~I~vt~G~~~al~~~~~~-- 73 (311)
T PRK08354 6 REEGLIDFSASV--NPYP--PEWLDEMFERAKEISGRYTY----YEWLEEEFSKLFG--EPIVITAGITEALYLIGIL-- 73 (311)
T ss_pred CccceeEecCCC--CCCC--CHHHHHHHHHHHHHhhcCCC----hHHHHHHHHHHHC--CCEEECCCHHHHHHHHHHh--
Confidence 334689999874 5554 67889999887665333332 2456666766664 5799999999999877652
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..+++.|++.+++|......+ ...|..+.. ++ .|++.+++.+++ ...+++++|.
T Consensus 74 -~~~gd~vlv~~P~y~~~~~~~-~~~g~~~~~-------------------~~-~d~~~l~~~~~~---~~~vi~~~P~- 127 (311)
T PRK08354 74 -ALRDRKVIIPRHTYGEYERVA-RFFAARIIK-------------------GP-NDPEKLEELVER---NSVVFFCNPN- 127 (311)
T ss_pred -hCCCCeEEEeCCCcHHHHHHH-HHcCCEEee-------------------cC-CCHHHHHHhhcC---CCEEEEecCC-
Confidence 236788999999998654433 333332211 11 178888877762 3456777775
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~ 271 (411)
|++|...+ .+.+++|.++|++||+++|+||+|.+| ..+.. .. .....-+.||||.++ +|+|+||+++ +.+.
T Consensus 128 NPTG~~~~-~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~--~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~ 200 (311)
T PRK08354 128 NPDGKFYN-FKELKPLLDAVEDRNALLILDEAFIDFVKKPES--PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEEA 200 (311)
T ss_pred CCCCCccC-HHHHHHHHHHhhhcCcEEEEeCcchhccccccc--cC-CCcEEEEeccHhhcCCccceeeeeee---hHHH
Confidence 45565544 444999999999999999999999988 33321 11 122233559999999 8999999987 3334
Q ss_pred hcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCC
Q 015230 272 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 351 (411)
Q Consensus 272 ~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 351 (411)
+.... ..+..+..+++++.+.++ +. .+++++..+.+++..+.+..... ..+.|.++++++.
T Consensus 201 l~~~~-----~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~----- 261 (311)
T PRK08354 201 FRSVR-----MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKALY----VKSDANFFIKDVG----- 261 (311)
T ss_pred HHHcC-----CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHhcC----CCCCCcEEEEECC-----
Confidence 43211 133445555555544433 11 23444444444444444322111 1344666666442
Q ss_pred CcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHH
Q 015230 352 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
+ ..++.+.|.++||.+.++.. +.+|+++. +.++.+++++.|+++
T Consensus 262 --------~---~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 309 (311)
T PRK08354 262 --------D---AEKFVEFLKRNGILVRDCTSFGLPGYIRFSVR-DREENEKLIRALREW 309 (311)
T ss_pred --------C---HHHHHHHHHHCCeEEEecccCCCCCeEEEEeC-CHHHHHHHHHHHHHh
Confidence 1 25788889999999999853 45788766 445677788877764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=201.63 Aligned_cols=333 Identities=14% Similarity=0.130 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHHc--CC---CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEE
Q 015230 54 DDQVLAALGETMKK--GT---SF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERII 122 (411)
Q Consensus 54 ~~~v~~a~~~~l~~--~~---~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi 122 (411)
+.++++.+.+.+.. +. .| .+..++++.+++++.+..+ .+++|++|+|+++|+..++++. ...+++.|+
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l-~~~~gd~Vl 220 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSEKDGIL 220 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHh-ccCCCCEEE
Confidence 33555555566654 21 12 2347788999999988654 6889999999999999999853 113568899
Q ss_pred EEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---CcEEE-EEEcccCCCCCc
Q 015230 123 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAA-IILEPVVGNSGF 198 (411)
Q Consensus 123 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~~~~-vi~~~~~~~~G~ 198 (411)
+..|+|+... ......|..+..++.....++.. |++++++.++... .++++ ++++| +|++|.
T Consensus 221 i~~P~Y~~y~-~~~~~~g~~~v~~~l~~~~~~~~------------d~~~Le~~l~~~~~~~~~~k~ivl~nP-~NPTG~ 286 (534)
T PLN02231 221 CPIPQYPLYS-ASIALHGGTLVPYYLDEATGWGL------------EISELKKQLEDARSKGITVRALVVINP-GNPTGQ 286 (534)
T ss_pred EeCCCChhHH-HHHHHcCCEEEEEecCcccCCCC------------CHHHHHHHHHHHhhcCCCeEEEEEeCC-CCCCCc
Confidence 9999998644 44444454444433321111110 8999999887421 13554 55556 444554
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc-ccCc-cc-cc---cCC---C---cchhhhhhhc-c-CCccccccc
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG-AQ-EY---FGV---T---PDLTTLGKII-G-GGLPVGAYG 263 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~-g~~~-~~-~~---~~~---~---~d~~~~sK~~-~-~G~~~g~~~ 263 (411)
+. +.+.+++|.++|++|+++||+||+|..+ .. +..+ .+ .. .+. . ..+.||||.+ + +|+|+||+.
T Consensus 287 vl-s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~ 365 (534)
T PLN02231 287 VL-AEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 365 (534)
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEE
Confidence 44 4555999999999999999999999887 42 3221 11 00 111 1 1234899987 5 699999996
Q ss_pred c---cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-------Hh----c-CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 264 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-------LK----E-PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 264 ~---~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-------~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+ ++++++.+.... ......+.+++.++..+++. +. . +++++.++++.+.+.+.|+++ .
T Consensus 366 ~~~~~~~l~~~l~k~~----~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~---~ 438 (534)
T PLN02231 366 VTGFTSDVREQIYKVA----SVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL---E 438 (534)
T ss_pred EecCCHHHHHHHHHHH----hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 4 678888775321 12334455666666655531 11 1 234556777777777777654 1
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC-------cceeeecCCCHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~-------~~~~~~~~~t~~~i~~~ 400 (411)
++.......|+++|..+.-+. ..+.............++..|. +.||.+.|+.. .++|+++..++++++++
T Consensus 439 gi~~~~p~Ggfylw~~l~lp~-~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~ea 517 (534)
T PLN02231 439 GVTCNKAEGAMYLFPRIHLPQ-KAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAI 517 (534)
T ss_pred CceecCCCeeeEEeccccCcH-HHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHH
Confidence 233333445777775442110 0000000000001134555555 56999999842 23889988899999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|.+++++
T Consensus 518 l~RL~~~~~~ 527 (534)
T PLN02231 518 VSRLTEFHKS 527 (534)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=192.24 Aligned_cols=326 Identities=13% Similarity=0.132 Sum_probs=204.4
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEE
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRF 97 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~ 97 (411)
|+....-+|.. ..+..++||..|. ++++ .++.+++++.+.+.....|..+ .-...+.+.+++.++ .+++|++
T Consensus 8 ~~~~~~~~~~~---~~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~aia~~~~~~~~~I~i 80 (349)
T PRK07908 8 PLAALRHHGDQ---DAGPGLLDFAVNV--RHDT-PPEWLRERLAARLGDLAAYPST-EDERRARAAVAARHGRTPDEVLL 80 (349)
T ss_pred hHHHHHhcccc---cCCCCeEEecCCC--CCCC-CCHHHHHHHHHHhhHhhcCCCc-cchHHHHHHHHHHhCcChhhEEE
Confidence 44444445553 2356799999883 3333 7888999999887653333211 223445555555556 7899999
Q ss_pred eCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 98 VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 98 ~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
|+|+++++..+++ + .++++++..++|.... ......|..+..++.....++ |++.+
T Consensus 81 t~Ga~~al~~~~~----l-~~~~viv~~P~y~~~~-~~~~~~G~~i~~v~~~~~~~~--------------d~~~l---- 136 (349)
T PRK07908 81 LAGAAEGFALLAR----L-RPRRAAVVHPSFTEPE-AALRAAGIPVHRVVLDPPFRL--------------DPAAV---- 136 (349)
T ss_pred CCCHHHHHHHHHh----c-CCCeEEEeCCCChHHH-HHHHHcCCEEEeeccCcccCc--------------ChhHh----
Confidence 9999999988776 2 2367778888887543 333344554444332211111 44433
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCC--Ccchhhhhhhcc-
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV--TPDLTTLGKIIG- 254 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~--~~d~~~~sK~~~- 254 (411)
+ ++++++++...+|++|.+.+ .++|.++|++ +.++|+||+|..+..+.......... ..-+.||||.++
T Consensus 137 ~---~~~~~i~l~np~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l 208 (349)
T PRK07908 137 P---DDADLVVIGNPTNPTSVLHP----AEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSL 208 (349)
T ss_pred c---cCCCEEEEcCCCCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccccCC
Confidence 2 23456555445566777777 6678888864 77888999998762222111111111 122348999998
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH--Hhc-CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR--LKE-PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
+|+|+||+++++++++.+..... .+..+++.++++.+.++. ... ++++++++++.+++.+.|+++ ++.
T Consensus 209 ~GlRiG~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~ 279 (349)
T PRK07908 209 AGLRVGYALGAPDVLARLTRGRA-----HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV----GAR 279 (349)
T ss_pred ccceeeeeecCHHHHHHHHhcCC-----CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC----CcE
Confidence 89999999999999988874322 244455665555444431 011 334555666666666666553 332
Q ss_pred eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHH
Q 015230 332 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~ 405 (411)
......|+++|+.+.+ ...+.+.|+++||.+.++. .+.+|+++. ++++++++++.|+
T Consensus 280 ~~~p~~g~~~~~~~~~----------------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~-~~~~~~~l~~al~ 342 (349)
T PRK07908 280 VVDPAAAPFVLVRVPD----------------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR-PRAEVPVLVQALA 342 (349)
T ss_pred eccCCCceEEEEECCc----------------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC-CCccHHHHHHHHH
Confidence 2233568899997732 2578889999999999863 245788874 7789999999999
Q ss_pred HHHH
Q 015230 406 KVLR 409 (411)
Q Consensus 406 ~~~~ 409 (411)
+++.
T Consensus 343 ~~~~ 346 (349)
T PRK07908 343 EILK 346 (349)
T ss_pred HHHh
Confidence 8765
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-23 Score=191.17 Aligned_cols=332 Identities=16% Similarity=0.135 Sum_probs=199.5
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHH-HHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGET-MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~-l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
+++||.++.+ . ..++.+++++.+. ... ..+ ++.....++.+.+++.++ .+.++++++|++++..++... .
T Consensus 6 ~~~~~~~~~~---~-~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~l~~~la~~~~-~~~~~~~~~Gs~a~~~~l~~~--~ 76 (353)
T PLN02721 6 RVVDLRSDTV---T-KPTDAMRAAMANAEVDD-DVL-GYDPTALRLEEEMAKIFG-KEAALFVPSGTMGNLISVLVH--C 76 (353)
T ss_pred hhhhhhcccc---c-CCCHHHHHHHHhccCCC-ccc-CCCHHHHHHHHHHHHHhC-CceeEEecCccHHHHHHHHHH--c
Confidence 4678888843 2 3688899988664 222 122 334446777888877774 455788888999988777642 3
Q ss_pred c-CCcEEEEEeCCcCCCchh--hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC----CCcEEEEE
Q 015230 116 T-GRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAII 188 (411)
Q Consensus 116 ~-~~~~vi~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~~~~~vi 188 (411)
. +++.|++.+++|...... .....|..+..++.. .... .|++++++.+++. .+++++++
T Consensus 77 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~------------~d~~~l~~~i~~~~~~~~~~~~~v~ 142 (353)
T PLN02721 77 DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGT------------MDLDAIEAAIRPKGDDHFPTTRLIC 142 (353)
T ss_pred cCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCC------------cCHHHHHHHHHhccCCCCCcceEEE
Confidence 3 567888888887544332 222334333332211 1110 1899999998742 13577888
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCcccccc--CCCcchhhhhhhccCCccccc-ccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYF--GVTPDLTTLGKIIGGGLPVGA-YGG 264 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~--~~~~d~~~~sK~~~~G~~~g~-~~~ 264 (411)
+++++++.|....+.+.+++|.++|++||+++|+||+|.-.... .....+.. +.+--++++||++++ |+|+ +++
T Consensus 143 l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--~~G~~~~~ 220 (353)
T PLN02721 143 LENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGA--PVGSVIVG 220 (353)
T ss_pred EeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCC--ceeeEEec
Confidence 88876665445555666999999999999999999998510100 00001101 111114579999985 6776 567
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCc-e-EEeeecceEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA-I-CGGYISGMFG 342 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~g~~~~ 342 (411)
++++++.+........+ ........++++..+++... +. ..+..++.+++.+.|+++ +.. . .....+++++
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~ 293 (353)
T PLN02721 221 SKSFIRKAKRLRKTLGG-GMRQVGVLAAAALVALQENV-PK-LEDDHKKAKLLAEGLNQI----KGLRVNVAAVETNIVY 293 (353)
T ss_pred CHHHHHhHHHHHHhcCC-CeehhHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhC----CCcEEecCCccceEEE
Confidence 88887765421111111 11111222333333443221 22 233345566777777654 221 1 1123356778
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.+.... ......+++.|.++||.+.++....+|++ +.++++++++++++|++++..+
T Consensus 294 ~~~~~~~-----------~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (353)
T PLN02721 294 FDITDGS-----------RITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALTL 353 (353)
T ss_pred EEccCCc-----------cccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhcC
Confidence 8774210 01236799999999999999987778875 4679999999999999987643
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=196.06 Aligned_cols=288 Identities=12% Similarity=0.094 Sum_probs=184.1
Q ss_pred HHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCC-cEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCCCC
Q 015230 78 ENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGV 154 (411)
Q Consensus 78 ~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~ 154 (411)
..++.+.+++.++ .+++|++|+|+++++..++... ..++ +.|++.++.|. .+.......|..+..++.. ...++
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~~~g~~~vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~ 137 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRAL--CVPGRDAVLVTPPVFG-MYAVCARLQNAPLVEVPLVDGADGF 137 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHh--cCCCCCeEEEcCCChH-HHHHHHHHcCCEEEEEecCCCccCC
Confidence 4566666666666 6789999999999999988742 2334 56777777654 4444444455555544331 11222
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~ 233 (411)
.. |++++.+.+.. .+++++++...+|++|.+.+ .+.+++|.+.|+ +++++|+||+|.+| ....
T Consensus 138 ~~------------d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~-~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~ 201 (364)
T PRK04781 138 HA------------DVPAIVAAALA--SNAKLVFLCSPSNPAGSAIA-LDQIERALQALQ-GKALVVVDEAYGEFSDVPS 201 (364)
T ss_pred Cc------------CHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcC-HHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc
Confidence 11 67776554432 35566666555666777776 333666666664 47899999999987 3221
Q ss_pred C-ccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc-CChHH
Q 015230 234 G-GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYE 308 (411)
Q Consensus 234 ~-~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~-~~~~~ 308 (411)
. ...+..+...-+.||||.++ +|+|+||+++++++++.+.... ..++.+.+++.++.++++.- .. .+.++
T Consensus 202 ~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~-----~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 276 (364)
T PRK04781 202 AVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQ-----APYPVPTPCAALAEQALSAPALAVTARRVA 276 (364)
T ss_pred hHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhcc-----CCCCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1 11122222233569999999 8999999999999999887532 24566777777777766431 11 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----C
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----F 383 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~ 383 (411)
+++++.+++.+.|+++. +........|+++|+++.+ ..++.+.|.++||.|.++. .
T Consensus 277 ~~~~~r~~l~~~L~~~~---~~~~~~p~~g~f~~~~~~~----------------~~~~~~~l~~~gI~v~~~~~~~~~~ 337 (364)
T PRK04781 277 EVRAERERLHAALAQLP---GVRRVYPSQGNFLLVRFDD----------------AEAAFQALLAAGVVVRDQRAAPRLS 337 (364)
T ss_pred HHHHHHHHHHHHHHhCC---CCCeECCCCCcEEEEEcCC----------------HHHHHHHHHHCCeEEeeCCCCCCCC
Confidence 45555555666665431 2212234568899988731 2578889999999999874 2
Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 384 EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 384 ~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+++|+++. +.++.++++++|+++..
T Consensus 338 ~~~Ris~~-~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 338 DALRITLG-TPEQNDRVLAALQRTQA 362 (364)
T ss_pred CeEEEeCC-CHHHHHHHHHHHHHHHh
Confidence 35788866 67889999999987653
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=201.56 Aligned_cols=342 Identities=14% Similarity=0.093 Sum_probs=190.6
Q ss_pred ccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhh-C-C---C--CCEEEEeCChHHHHHHHHHHHH-
Q 015230 45 WGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISA-V-P---S--IEMVRFVNSGTEACMGVLRLAR- 113 (411)
Q Consensus 45 ~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~-~-~---~--~~~v~~~~~g~~a~~~al~~~~- 113 (411)
++....++..|+.+..+.+++.. ..|+ +..++++++++++.+. . . . .++|++|+|+++|+..++..+.
T Consensus 105 l~~g~p~~~~~~~v~e~~~~~~~-~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~ 183 (527)
T PRK09275 105 YVRDQLGFDADEFVYELVDGIIG-DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKE 183 (527)
T ss_pred hcCCCCCCCCCHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhh
Confidence 33345567444444335565543 2332 3367788888866543 2 1 1 3489999999999999887421
Q ss_pred --hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC--CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE
Q 015230 114 --AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 114 --~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~ 189 (411)
.+.+++.|++.+|.|+..... ..+.+.+...++++ ...++. .|.++++++++ ++++++++
T Consensus 184 ~~ll~pGD~Vlv~~P~y~~Y~~~-~~l~g~~~~~v~v~~~~~~~f~------------~d~~~l~~~~~---~~tkai~l 247 (527)
T PRK09275 184 NGLLKAGDKIALMTPIFTPYLEI-PELPRYDLEVVHINADEENEWQ------------YPDSELEKLRD---PSIKALFL 247 (527)
T ss_pred hhcCCCCCEEEEeCCChHHHHHH-HHHcCCCeEEEEeecCcccCCC------------CCHHHHHhhcC---CCCCEEEE
Confidence 246778999999999864333 33334333332222 111111 17888888665 35555554
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHH--hCCEEEEeccccccccccCcccccc-CCCcchhhhhhhcc-CCccccccccc
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGR 265 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~~~g~~~~~~~~-~~~~d~~~~sK~~~-~G~~~g~~~~~ 265 (411)
+..+|++|.+. +++.+++|.++|++ ++++||+||+|..|........... ....-+.||||.++ +|||+||++++
T Consensus 248 ~nP~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~ 326 (527)
T PRK09275 248 VNPSNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALH 326 (527)
T ss_pred eCCcCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcC
Confidence 44445555544 35559999999965 4999999999987721111111111 12233559999998 79999999887
Q ss_pred HH-----HHHHhc-----------------------------CCCCcccccCCCCCHHHHHH-H----HHHHHHHhc--C
Q 015230 266 RD-----IMEMVA-----------------------------PAGPMYQAGTLSGNPLAMTA-G----IHTLKRLKE--P 304 (411)
Q Consensus 266 ~~-----~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~a~-~----~~~l~~~~~--~ 304 (411)
++ +++.+. ........++.+.+.+.+.+ + .++++..+. +
T Consensus 327 ~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~ 406 (527)
T PRK09275 327 EDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKK 406 (527)
T ss_pred chhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHH
Confidence 75 333220 00011122345555555554 2 222321111 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCC----CcchhcccchHHHHHHHHHH-HHcCeEec
Q 015230 305 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY----NFEDAKKSETTKFARFYRGM-LEEGVYFA 379 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~ 379 (411)
++++.++++.+.+.+.| ..+........++++++++...... .+........+ ..+++..| .+.||.+.
T Consensus 407 ~~~~~~~~Rr~~l~~~L-----g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~-~~~f~~~Ll~e~gV~v~ 480 (527)
T PRK09275 407 AMKDIIRRRYKALYEGL-----GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYS-PVDLLFRLAEETGVVLL 480 (527)
T ss_pred HHHHHHHHHHHHHHHHc-----CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCC-HHHHHHHHHhcCCEEEe
Confidence 23333334333333333 1122212345678888887532110 00000000011 24455555 45599999
Q ss_pred cCC-----CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 380 PSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ~~~-----~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
||. .+.+|++++ .+++++.++.++|.+++.+
T Consensus 481 PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~ 517 (527)
T PRK09275 481 PGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDE 517 (527)
T ss_pred CchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 984 235899887 5889999999999988764
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=193.03 Aligned_cols=310 Identities=13% Similarity=0.062 Sum_probs=188.7
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
+...+++..|. +++| .++.+ ....... |+.....++.+.+++.++ .+++|++|+|+++++..+++..
T Consensus 30 ~~~~~~l~~ne--~~~~-~~~~~------~~~~~~~--Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~- 97 (354)
T PRK04635 30 GRGDIWINANE--SPFN-NEYKL------DLARLNR--YPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAF- 97 (354)
T ss_pred CCCcEEeeCCC--CCCC-CChhh------hhHHhcc--CCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHh-
Confidence 34567888775 4555 23322 1111112 332234666677777677 7899999999999999998743
Q ss_pred hccCC-cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 114 AFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 114 ~~~~~-~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..++ +.|++..++|.... ......|..+..++....... |.+.+++ + +++++++++.+
T Consensus 98 -~~~g~d~vlv~~P~y~~y~-~~~~~~g~~v~~v~~~~~~~~--------------~~~~l~~-~----~~~~li~i~nP 156 (354)
T PRK04635 98 -CEPGQDSIACFGPTYGMYA-ISAETFNVGVKALPLTADYQL--------------PLDYIEQ-L----DGAKLVFICNP 156 (354)
T ss_pred -cCCCCCeEEEcCCChHHHH-HHHHHcCCEEEEEecCCCCCC--------------CHHHHHh-c----cCCCEEEEeCC
Confidence 2334 67899888887532 333344554444333211111 6677652 2 24566666666
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHh-CCEEEEecccccc-ccccCcc-ccccCCCcchhhhhhhcc-CCcccccccccHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 268 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~-~~~li~De~~~g~-~~g~~~~-~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~ 268 (411)
+|++|.+.+ .+++.++++.. +++||+||+|..| ....... ........-+.||||+++ +|+|+||+++++++
T Consensus 157 ~NPTG~~~~----~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~ 232 (354)
T PRK04635 157 NNPTGTVID----RADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEEL 232 (354)
T ss_pred CCCCCccCC----HHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHH
Confidence 667777776 44444444442 5999999999877 2211111 111111122459999998 89999999999999
Q ss_pred HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEE
Q 015230 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 345 (411)
Q Consensus 269 ~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 345 (411)
++.+.... ..++.+.+++.++.++++.. +. ++.++.++++.+++.+.|+++ +........|.++|+.+
T Consensus 233 ~~~l~~~~-----~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~g~f~~~~~ 303 (354)
T PRK04635 233 IEILMRVI-----APYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY----GGAKVLEGNGNYVLAKF 303 (354)
T ss_pred HHHHHhhc-----CCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceECCCCCcEEEEEC
Confidence 98876321 23455666666666666421 11 223344555555666666553 32222234577888776
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
.+ ..++.+.|.++||.+..+. .+.+|+++. +.+++++++++|++-
T Consensus 304 ~~----------------~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~-~~e~~~~l~~al~~~ 352 (354)
T PRK04635 304 DD----------------VDAVFKALWDAGIVARAYKDPRLANCIRFSFS-NRAETDKLIGLIRNQ 352 (354)
T ss_pred CC----------------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHh
Confidence 31 2567888999999997653 345888865 789999999999764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=192.81 Aligned_cols=314 Identities=18% Similarity=0.184 Sum_probs=207.2
Q ss_pred CcHHHHHHHHH-HHHcC-C---CCCCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEE
Q 015230 53 ADDQVLAALGE-TMKKG-T---SFGAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 124 (411)
Q Consensus 53 ~~~~v~~a~~~-~l~~~-~---~~~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~ 124 (411)
.+|.++.++.. ..... . ...+..++++.+++++...++ ..+++++++|+++++..++..+ ...+++|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~--~~~g~~vl~~ 89 (350)
T cd00609 12 PPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL--LNPGDEVLVP 89 (350)
T ss_pred CCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh--CCCCCEEEEc
Confidence 56666666654 11111 1 122346777888888877753 4778999999999999988853 2346778888
Q ss_pred eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 125 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.++|++. ..++...+..+..++........ .+.+.++... .++++++++++.++++|.+.+ .+
T Consensus 90 ~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~---~~~~~~v~i~~~~~~tG~~~~-~~ 152 (350)
T cd00609 90 DPTYPGY-EAAARLAGAEVVPVPLDEEGGFL------------LDLELLEAAK---TPKTKLLYLNNPNNPTGAVLS-EE 152 (350)
T ss_pred CCCchhH-HHHHHHCCCEEEEEecccccCCc------------cCHHHHHhhc---CccceEEEEECCCCCCCcccC-HH
Confidence 7777754 34444444433333322111110 0113444332 257888889888888887765 55
Q ss_pred HHHHHHHHHHHhCCEEEEecccccc-ccccC----ccccccCCCcchhhhhhhcc-CCcccccccccH-HHHHHhcCCCC
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGP 277 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~-~~g~~----~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~-~~~~~~~~~~~ 277 (411)
.+++|.++|+++|+++|+||+|+++ ..+.. ...+..+....+.|++|+++ +|+++|++++++ ++.+.+...
T Consensus 153 ~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~-- 230 (350)
T cd00609 153 ELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKL-- 230 (350)
T ss_pred HHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHH--
Confidence 5889999999999999999999876 43332 11222223333558999999 789999998888 788877632
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHh-c-CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeecceEEEEEecCCCCCcc
Q 015230 278 MYQAGTLSGNPLAMTAGIHTLKRLK-E-PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFE 354 (411)
Q Consensus 278 ~~~~~t~~~~~~~~a~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 354 (411)
....++..+..++.++..+++... . ++++++++++.+++++.|++. +... .....|.++++.+...
T Consensus 231 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~g~~~~~~~~~~------ 299 (350)
T cd00609 231 -LPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKEL----GPLVVVKPSGGFFLWLDLPEG------ 299 (350)
T ss_pred -HHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCccEEEEEecCCC------
Confidence 223356777888888877777552 2 556667777777777777765 3222 2345678888877432
Q ss_pred hhcccchHHHHHHHHHHHHcCeEeccC------CCcceeeecCCCHHHHHHHHHHHH
Q 015230 355 DAKKSETTKFARFYRGMLEEGVYFAPS------QFEAGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~Gi~v~~~------~~~~~~~~~~~t~~~i~~~i~~l~ 405 (411)
...+.+.+.|.++||.+.++ ....+|+.+...++++++++++|+
T Consensus 300 -------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 300 -------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred -------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 22356778888889999987 345688865555999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=189.75 Aligned_cols=327 Identities=14% Similarity=0.157 Sum_probs=208.5
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--CC-------CHHHHHHHHHHHhhCC-C-CCEEEEeCChHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--AP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTE 103 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--~~-------~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~ 103 (411)
+..|+|..+. |..++.+++++.+.++...... .. .+..+++.+.+++.++ . +++|++|+|+++
T Consensus 16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 3456774443 3467889999988876421111 11 2334667788888887 3 689999999999
Q ss_pred HHHHHHHHHH--hccCCcEEEEEeCCcCCCchhh---hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH
Q 015230 104 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 178 (411)
Q Consensus 104 a~~~al~~~~--~~~~~~~vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 178 (411)
++..++.... ...++++|++.++.|++..... ....|..+..++.... +.. |++++++.++
T Consensus 90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~-------------~~~~l~~~i~ 155 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGAD-LLP-------------DIRQLPELLT 155 (398)
T ss_pred HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCC-CCc-------------CHHHHHHHhc
Confidence 9999987432 1345678999888888643322 2233444444332211 111 7899998886
Q ss_pred cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhh--hhccCC
Q 015230 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGG 256 (411)
Q Consensus 179 ~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s--K~~~~G 256 (411)
++++++++..+++++|.+.+ +++|.++|++||+++++|++|+.... ..+.....+|+.++| |.++.
T Consensus 156 ---~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~~~~----~~~~~~~~~d~~~~s~~K~~gp- 223 (398)
T TIGR03392 156 ---PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQGVVHG----PPDVQALDIDFYAFSGHKLYGP- 223 (398)
T ss_pred ---cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhhcCCC----CCChhhcCCCEEEEecccccCC-
Confidence 35678888888888999988 99999999999999999999962111 111122345766666 97763
Q ss_pred cccccccccHHHHHHhcCCCCcc------------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHH
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMY------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITG 315 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~------------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~ 315 (411)
..+|+++.++++++.+.+..... ..-.-+.+..+..+..++++.+.+ ++..++.+++.+
T Consensus 224 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~ 303 (398)
T TIGR03392 224 TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLAD 303 (398)
T ss_pred CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 12899999998887765321000 000114455566677777776654 344455555555
Q ss_pred HHHHHHHHHHHhcCCc-eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------
Q 015230 316 ELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------- 383 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----------- 383 (411)
++++.|+++ +.. ......+.++.+.+.+ ...+.+.+.|.++||.++++..
T Consensus 304 ~l~~~l~~l----~g~~~~~~~~~~i~~~~~~~--------------~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~ 365 (398)
T TIGR03392 304 LAEERLAQL----PGFRSFRCPGSSLLAFDFAG--------------VHHSDLAALLAESGIALRAGQHCAQPLMAALGV 365 (398)
T ss_pred HHHHHHhcC----CCeEEeCCCCCcEEEEEeCC--------------cCHHHHHHHHHhCCEEEecCccchHHHHHHhCC
Confidence 555555543 322 1112234466665522 1125788889999999987642
Q ss_pred -cceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 384 -EAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 384 -~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
..+|+ ...+|++|++++++.|+++++.+
T Consensus 366 ~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 366 SGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred CCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 34777 45789999999999999988653
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=194.57 Aligned_cols=336 Identities=16% Similarity=0.094 Sum_probs=195.1
Q ss_pred CEEEeccCCccccccCCC--cHHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCCC---CCEEE--EeCChHH
Q 015230 36 NEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVPS---IEMVR--FVNSGTE 103 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~--~~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~~---~~~v~--~~~~g~~ 103 (411)
...+++..+...++.++. -+.+.++....+.... .| .+..++++.+++++...... .++|. .+.+|+.
T Consensus 48 ~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~G 127 (423)
T PLN02397 48 PVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTG 127 (423)
T ss_pred cceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchH
Confidence 456777777322332221 1234444333332221 23 23468888888888655421 23342 2344444
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-C-CCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P-DSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
+...++.+...+.+++.|++.+|+|... .......|..+..++. + ...+. |++.+++.++...
T Consensus 128 a~~l~~~~~~~~~pGd~Vlv~~P~y~~y-~~~~~~~g~~~~~v~l~~~~~~~~--------------d~~~l~~~l~~~~ 192 (423)
T PLN02397 128 SLRLGAEFLARFYPGSTIYIPNPTWGNH-HNIFRDAGVPVRTYRYYDPKTRGL--------------DFDGLLEDLKAAP 192 (423)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCchhH-HHHHHHcCCeEEEeecccCcCCcc--------------CHHHHHHHHHhCC
Confidence 4443333332344678899999999865 4444455554444333 1 11111 7888888877543
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc---cCcccccc---C-CCcchhhhhhhc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYF---G-VTPDLTTLGKII 253 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g---~~~~~~~~---~-~~~d~~~~sK~~ 253 (411)
.++++++++..+|++|...+ .+.+++|.++|++||++||+||+|.+| ..+ .......+ + ...-+.||||.+
T Consensus 193 ~~~~~i~~~~P~NPTG~v~s-~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~ 271 (423)
T PLN02397 193 DGSFVLLHACAHNPTGVDPT-PEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNM 271 (423)
T ss_pred CCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccC
Confidence 35566666655666666554 555999999999999999999999988 422 11111111 1 112244899999
Q ss_pred c-CCccccccc---ccHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHH-------h-cCChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYG---GRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL-------K-EPGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~---~~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~-------~-~~~~~~~~~~~~~~~~~~ 320 (411)
+ +|||+||++ .++++++.+... .........+.+.+++.++.++++.- + -+++++.++++.+.+.+.
T Consensus 272 ~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~ 351 (423)
T PLN02397 272 GLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDA 351 (423)
T ss_pred CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 799999984 355544432210 01111112344566777766665321 1 034556777777777777
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCCcceeeecC-CCHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSSDDIQ 398 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~~~~~~~~-~t~~~i~ 398 (411)
|+++....++....+..|+++|+++. .++++.| .+.||.+.+++ |++++ .+.+.++
T Consensus 352 L~~~~~~~~~~~~~p~gg~fl~~~l~------------------~~~~~~Ll~~~~V~v~~~~----Ri~~~~~~~~~i~ 409 (423)
T PLN02397 352 LEARGSPGDWSHITKQIGMFSFTGLN------------------KEQVDRMTKEYHIYMTRDG----RISMAGLSSKNVP 409 (423)
T ss_pred HHhcCCCCCCCcccCCceEEEecCCC------------------HHHHHHHHHhCCEEECCCC----eEEEeeCCHHHHH
Confidence 77762111122223556888888662 2355666 45599998543 88775 8999999
Q ss_pred HHHHHHHHHHH
Q 015230 399 HTITAAEKVLR 409 (411)
Q Consensus 399 ~~i~~l~~~~~ 409 (411)
+++++|.+++.
T Consensus 410 ~~~~~i~~~~~ 420 (423)
T PLN02397 410 YLADAIHAVVT 420 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999999874
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-23 Score=194.04 Aligned_cols=321 Identities=13% Similarity=0.104 Sum_probs=199.7
Q ss_pred CCccccccCCCcHHHHHHHHHHHHcC-CCCC--------CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 43 GSWGPAIIGHADDQVLAALGETMKKG-TSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 43 ~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
++.+....||++|+++.++.... .. ..+. +..++++++++++++.++ +.+.++++++|+++.+.++.++
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~ 101 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA 101 (398)
T ss_pred ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence 44555678998888887766655 21 1222 234577899999999987 4557888887777777776655
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcC----CCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAG----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
+...++++.|+...++|+.+...+...+ ..+..++.... + ..|++++++.+. +++++|+
T Consensus 102 ~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~---~~t~~vi 164 (398)
T cd00613 102 IRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEG-G-------------TVDLEALKEEVS---EEVAALM 164 (398)
T ss_pred HhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCC-C-------------CcCHHHHHHhcC---CCeEEEE
Confidence 4333233444556667777766666655 22222221110 0 017888888875 4688888
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch--hhhhhhcc----CCccccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTLGKIIG----GGLPVGA 261 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~--~~~sK~~~----~G~~~g~ 261 (411)
+++++ ++|.+.+ ++++|.++|++||+++|+|++|+.. .... ...+ .+|+ .+++|++. ||+++|+
T Consensus 165 v~~~~-~~G~~~~---~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~~--~~d~~~~s~~K~~~p~g~Ggp~~g~ 235 (398)
T cd00613 165 VQYPN-TLGVFED---LIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGEY--GADIVVGNLQKTGVPHGGGGPGAGF 235 (398)
T ss_pred EECCC-CCceecc---hHHHHHHHHHhcCCEEEEEeccccccCCCC---hHHc--CCCEEEeeccccCCCCCCCCCceeE
Confidence 88865 5677743 3699999999999999999998622 1111 1122 3454 47889873 3577899
Q ss_pred ccccHHHHHHhcCCCC--------------------------cccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHH
Q 015230 262 YGGRRDIMEMVAPAGP--------------------------MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNK 312 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~--------------------------~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~ 312 (411)
++.++++++.+..... ....++++.+++.++++..+++.+.+ +++++++++
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~ 315 (398)
T cd00613 236 FAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHL 315 (398)
T ss_pred EEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9998888876532100 00122345556666666666665543 456688888
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC---CCcceee-
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---QFEAGFT- 388 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---~~~~~~~- 388 (411)
+.++++++|+++..... . .......+++.+... ...+..++++.|.++||++... ....+|+
T Consensus 316 ~~~~l~~~L~~~~~~~~-~--~~~~~~~v~~~~~~~-----------~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis 381 (398)
T cd00613 316 NANYLAKRLKEVGGVLP-F--NGPFFHEFVLRLPPL-----------YGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIE 381 (398)
T ss_pred HHHHHHHHHHhcCCccc-C--CCCeeEEEEEEcCCc-----------chHHHHHHHHhhhhcCccccccccCCCCeEEEE
Confidence 88999988887632110 0 011112234443210 0234578999999999988663 3345666
Q ss_pred -ecCCCHHHHHHHHHHH
Q 015230 389 -SLAHSSDDIQHTITAA 404 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l 404 (411)
+..+|++|+|+++++|
T Consensus 382 ~~~~~t~edid~~~~~L 398 (398)
T cd00613 382 PTETETKEELDALLEAL 398 (398)
T ss_pred cCCCCCHHHHHHHHHhC
Confidence 6888999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=190.07 Aligned_cols=320 Identities=18% Similarity=0.143 Sum_probs=201.2
Q ss_pred eccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 40 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 40 d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
||.|. +++| .+|.+++++.+.+.... ..++....+++.+++++.++ .+++++++||++++..+++.. ..+++
T Consensus 1 ~~~~~---~~~~-~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l--~~~gd 72 (338)
T cd06502 1 DFRSD---TVTG-PTPEMLEAMAAANVGDD-VYGEDPTTAKLEARAAELFG-KEAALFVPSGTAANQLALAAH--TQPGG 72 (338)
T ss_pred Ccccc---cCCC-CCHHHHHHHHhcccCCc-ccCCCHHHHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHh--cCCCC
Confidence 67777 8888 88899999988664322 22356778899999999987 778999999999999888753 34556
Q ss_pred EEEEEeCCcCCCchh--hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC----CcEEEEEEcccC
Q 015230 120 RIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPVV 193 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~----~~~~~vi~~~~~ 193 (411)
.|++.+++|...... .....|..+..++... +. .|++++++++++.. .+++++++++++
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~-------------~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~ 137 (338)
T cd06502 73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN--GK-------------LTPEDLEAAIRPRDDIHFPPPSLVSLENTT 137 (338)
T ss_pred eEEEecCcceeeecCCcHHHHcCceEEeecCCC--Cc-------------CCHHHHHHHhhccCCCcCCcceEEEEEeec
Confidence 777666655433322 1222344433332211 11 18999999987421 245666666555
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc---ccccCccccccCCCcc--hhhhhhhccCCcccccc-cccHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPD--LTTLGKIIGGGLPVGAY-GGRRD 267 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~---~~g~~~~~~~~~~~~d--~~~~sK~~~~G~~~g~~-~~~~~ 267 (411)
+.||.+ +.+.+++|.++|++||+++|+||+|..+ ..|. ........+| +.++||+++. +.|++ +++++
T Consensus 138 n~g~~~--~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~--~~g~~~~~~~~ 211 (338)
T cd06502 138 EGGTVY--PLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA--PVGAVVVGNRD 211 (338)
T ss_pred CCcccc--CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC--ccceEEECCHH
Confidence 555544 4445999999999999999999998522 1222 1111212334 3489999974 33554 57888
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEec
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 347 (411)
+++.+..... ..+.+++.++++++++.++++.-...+..+++.++.+++.+.|+++ +... ....+.++.+.+..
T Consensus 212 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~-~~~~~~~~~v~~~~ 285 (338)
T cd06502 212 FIARARRRRK-QAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL----GGLE-SEVQTNIVLLDPVE 285 (338)
T ss_pred HHHHHHHHHH-HhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----CCCc-ccccCCeEEEecCC
Confidence 8887763211 1123455566777777776653111345567777778888888775 3211 12235555554421
Q ss_pred CCCCCcchhcccchHHHHHHHHHHH---HcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGML---EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~---~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
......++.+.+. ++|+++.+.+.+.+|+ ++.+|+++++++++++++
T Consensus 286 ------------~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 286 ------------ANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ------------ccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 1112234444443 6899998876567777 567799999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=197.66 Aligned_cols=345 Identities=14% Similarity=0.105 Sum_probs=185.3
Q ss_pred ccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHH-HHHhhCC----CCC--EEEEeCChHHHHHHHHHHHH-
Q 015230 45 WGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAE-MVISAVP----SIE--MVRFVNSGTEACMGVLRLAR- 113 (411)
Q Consensus 45 ~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~-~l~~~~~----~~~--~v~~~~~g~~a~~~al~~~~- 113 (411)
++....++.+++++.++.+.+.. ..|+ +....++++++ ++.+... ..+ +|++|+|+++|+..++..+.
T Consensus 99 l~~g~p~~~~~~~~~~~~~~~~~-~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~ 177 (521)
T TIGR03801 99 YVIDQLGFDPDAFLYEMCDGIIG-DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKA 177 (521)
T ss_pred hcCCCCCCCCCHHHHHHHHHhhc-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhH
Confidence 33344566666777777777532 2332 22445555554 4444432 233 89999999999999886421
Q ss_pred --hccCCcEEEEEeCCcCCCchhhhhhcC--CCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE-
Q 015230 114 --AFTGRERIIKFEGCYHGHADPFLVKAG--SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII- 188 (411)
Q Consensus 114 --~~~~~~~vi~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi- 188 (411)
.+.+++.|++.+|+|...... ....+ ..+..++.....+ .+...+.. |.++++++++ .++++++
T Consensus 178 ~~ll~pGD~Vlv~~P~y~~y~~~-~~l~~~g~~vv~i~~~~~~~----~g~~~~~~---d~~~l~~~~~---~~~kai~l 246 (521)
T TIGR03801 178 NELLKKGDKIALMTPIFTPYLEI-PELPRYDFEVVRIKADEMTE----DGTHTWQY---PDKELEKLRD---PSIKALFV 246 (521)
T ss_pred hhcCCCCCEEEEeCCCcHHHHHH-HHHhcCCcEEEEeecccccc----cccccCCC---CHHHHHHhcC---CCCcEEEE
Confidence 245678899999999864333 33332 3333322211110 00000001 7788887654 3455555
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHh--CCEEEEeccccccccccCcccccc-CCCcchhhhhhhcc-CCcccccccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGG 264 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~~~g~~~~~~~~-~~~~d~~~~sK~~~-~G~~~g~~~~ 264 (411)
++|. |++|.+.+ ++.+++|.++|++| +++||+||+|..|........... ....-+.||||.++ +|||+||+++
T Consensus 247 ~nP~-NPTG~vls-~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~ 324 (521)
T TIGR03801 247 VNPS-NPPSVAMS-DESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIAL 324 (521)
T ss_pred eCCC-CCCCCCCC-HHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhhhc
Confidence 5665 44554444 44499999999987 999999999987721111111111 11223458999998 7999999988
Q ss_pred cHH-----HHH--------HhcCC---------------------CCcccccCCCCCHHHHH-----HHHHHHHHHhc--
Q 015230 265 RRD-----IME--------MVAPA---------------------GPMYQAGTLSGNPLAMT-----AGIHTLKRLKE-- 303 (411)
Q Consensus 265 ~~~-----~~~--------~~~~~---------------------~~~~~~~t~~~~~~~~a-----~~~~~l~~~~~-- 303 (411)
+++ +++ .+... ......++.+.+.+.+. ++.++++....
T Consensus 325 ~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y~ 404 (521)
T TIGR03801 325 HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAYK 404 (521)
T ss_pred CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhHH
Confidence 754 221 11100 00111223334444443 22333321110
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCc--eEEeeecceEEEEEecCCCC----CcchhcccchHHHHHHHHHHHHcCeE
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHA--ICGGYISGMFGFFFTEGPVY----NFEDAKKSETTKFARFYRGMLEEGVY 377 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~Gi~ 377 (411)
++.++.++++.+.+.+.| +.. ......|+++++++...... .|..-........+.+.+.+.+.||.
T Consensus 405 ~~~~~~~~~R~~~l~~~L-------g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~ 477 (521)
T TIGR03801 405 AETKDICRRREKLLFRGL-------GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIV 477 (521)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEE
Confidence 222233333333333333 322 12345678899988532110 00000000001223344444566999
Q ss_pred eccCC-----CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 378 FAPSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 378 v~~~~-----~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
+.||. .+.+|++++ .+++++.++.++|++++.+
T Consensus 478 v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~ 516 (521)
T TIGR03801 478 LLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDE 516 (521)
T ss_pred EeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99983 234899887 6899999999999988764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=188.21 Aligned_cols=326 Identities=15% Similarity=0.156 Sum_probs=210.1
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CC-------CCHHHHHHHHHHHhhCC--CCCEEEEeCChHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GA-------PCLLENVLAEMVISAVP--SIEMVRFVNSGTE 103 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~-------~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~ 103 (411)
+..|+|-.+. |..++.+.+++.+.++..... .+ ..+..+++.+.+++.++ .+++|++++|+++
T Consensus 19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence 3466774443 346778999998888763211 11 13345677788888887 4689999999999
Q ss_pred HHHHHHHHHH--hccCCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH
Q 015230 104 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 178 (411)
Q Consensus 104 a~~~al~~~~--~~~~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 178 (411)
++..+++... ...++++|++.++.|++...... ...|..+..++... .+. .|++++++.++
T Consensus 93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~-------------~d~~~l~~~i~ 158 (401)
T PRK10874 93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA-DRL-------------PDVDLLPELIT 158 (401)
T ss_pred HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC-CCc-------------CCHHHHHHhcC
Confidence 9999987542 13466889999999887433322 23344444433321 111 17899998886
Q ss_pred cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC-
Q 015230 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG- 255 (411)
Q Consensus 179 ~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~- 255 (411)
++++++++..+++.+|.+.+ +++|.++|+++|+++++|++|+- |. +..+.....+|+. +++|.++.
T Consensus 159 ---~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~~---g~-~~~~~~~~~~d~~~~s~~K~~gp~ 227 (401)
T PRK10874 159 ---PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQGA---VH-FPADVQALDIDFYAFSGHKLYGPT 227 (401)
T ss_pred ---cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCccc---cc-ccCCchhcCCCEEEEecccccCCC
Confidence 35678888888888999988 99999999999999999999961 11 0111112235654 56697762
Q ss_pred CcccccccccHHHHHHhcCCCCc------------------ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHH
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPM------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKIT 314 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~------------------~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~ 314 (411)
| +|+++++++.++.+.+.... .....-+.+..+..+..++++.+.+ ++..++.++..
T Consensus 228 G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~ 305 (401)
T PRK10874 228 G--IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLA 305 (401)
T ss_pred c--cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4 68999999888876531100 0001114455566666677776554 33445555666
Q ss_pred HHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------
Q 015230 315 GELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------- 383 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------- 383 (411)
+++++.|+++ +..... ...+.++.+.+.+. ...++.+.|.++||.+.++..
T Consensus 306 ~~l~~~l~~~----~g~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g 367 (401)
T PRK10874 306 TLAEDALAKL----PGFRSFRCQDSSLLAFDFAGV--------------HHSDLVTLLAEYGIALRAGQHCAQPLLAALG 367 (401)
T ss_pred HHHHHHHhcC----CCEEEeCCCCCcEEEEEECCc--------------CHHHHHHHHHHCCcEEeccccchHHHHHHhC
Confidence 6666666543 322111 23345666655321 125788889999999988642
Q ss_pred --cceeee--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 384 --EAGFTS--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 384 --~~~~~~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
..+|++ ..+|++|++++++.|+++++.+
T Consensus 368 ~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 368 VTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred CCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 347774 5669999999999999988753
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=189.60 Aligned_cols=319 Identities=17% Similarity=0.139 Sum_probs=193.7
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccC
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
.+||.++ .+.+ .+|.+++++.+.+.....| ++.....++.+.+++.++ .+.+++++||++++..++... ..+
T Consensus 1 ~~~~~~~---~~~~-p~~~~~~a~~~~~~~~~~Y-~~~~~~~~L~~~la~~~g-~~~~~v~~~g~~a~~~~l~~~--~~~ 72 (333)
T PRK10534 1 MIDLRSD---TVTR-PSRAMLEAMMAAPVGDDVY-GDDPTVNALQDYAAELSG-KEAALFLPTGTQANLVALLSH--CER 72 (333)
T ss_pred Ccccccc---cCCC-CCHHHHHHHHhccCCCccc-CCCHHHHHHHHHHHHHhC-CCeEEEeCchHHHHHHHHHHh--cCC
Confidence 3789998 5566 8899999987755443222 266777888888888884 455678888999988877642 345
Q ss_pred CcEEEEEeCCcCCCchhh-hhhcC-CCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---CcEEEEEEccc
Q 015230 118 RERIIKFEGCYHGHADPF-LVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPV 192 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~-~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~~~~vi~~~~ 192 (411)
++.|++..++|...+... ....+ .....++.. ..+ ..|+++++++++.+. .++++++++.+
T Consensus 73 gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~d~~~l~~~i~~~~~~~~~~~lv~l~np 138 (333)
T PRK10534 73 GEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADG------------TLPLDKVAAKIKPDDIHFARTRLLSLENT 138 (333)
T ss_pred CCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCC------------CCCHHHHHHhhcccCcCcccceEEEEecC
Confidence 567776655553222211 11111 111111111 111 117899988885310 13556666532
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc---ccCccccccCCCc-chhhhhhhccCCcccc-cccccH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL---AYGGAQEYFGVTP-DLTTLGKIIGGGLPVG-AYGGRR 266 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~---g~~~~~~~~~~~~-d~~~~sK~~~~G~~~g-~~~~~~ 266 (411)
++|.+.+ .+.+++|.++|++|+++|++||+|. | .. +... .......+ -+++|||+++. ++| |+++++
T Consensus 139 --~~G~v~~-~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~-~~~~~~~~~~~~s~SK~~~~--~~G~~~~~~~ 211 (333)
T PRK10534 139 --HNGKVLP-REYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL-KEITQYCDSFTICLSKGLGT--PVGSLLVGNR 211 (333)
T ss_pred --CCCeecC-HHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH-HHHHhcCCEEEEEeEcCCCC--cccceEEcCH
Confidence 2476665 3448999999999999999999986 3 21 2111 11111111 24589998874 588 577899
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
++++.+....... +..+..+.++++++.++++.. .+.+++.++..+++.+.|+++ ++... ...++++++.+.
T Consensus 212 ~~i~~~~~~~~~~-~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~----g~~~~-~~~~nfv~~~~~ 283 (333)
T PRK10534 212 DYIKRARRWRKMT-GGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA----GADVM-RQDTNMLFVRVG 283 (333)
T ss_pred HHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC----CCccC-CCCceEEEEECC
Confidence 9988886322111 112223345566666665432 122333444556777777765 33222 235788888763
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~ 409 (411)
. ....++.+.|+++||++.++. .+|+ .+.+|++++++++++|++.+.
T Consensus 284 ~--------------~~~~~~~~~l~~~gi~v~~~~--~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 284 E--------------EQAAALGEYMRERNVLINASP--IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred c--------------hhHHHHHHHHHHcCeeecCCc--eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 1 123678899999999999874 4566 345799999999999998764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=189.44 Aligned_cols=305 Identities=13% Similarity=0.098 Sum_probs=188.6
Q ss_pred CCCHHHHHHHHHHHhhCC--C---CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC
Q 015230 73 APCLLENVLAEMVISAVP--S---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 147 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~--~---~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (411)
+..++++.+++++.+..+ . .++|++|+|+++++..++++. ..+++.|++.+|+|+..........|.++..++
T Consensus 45 G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~ 122 (388)
T PRK08637 45 GIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF--VDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYP 122 (388)
T ss_pred CCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh--cCCCCEEEEcCCCCccHHHHHHHhcCCEEEEec
Confidence 446777888887776442 2 257899999999999888742 345678999999887654333334565555544
Q ss_pred CC-CCCCCCCCCCCceeecCCCCHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-----hCCEE
Q 015230 148 LP-DSPGVPKGATYETLTAPFNDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALL 220 (411)
Q Consensus 148 ~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-----~~~~l 220 (411)
.. ...++ |++++++.++. ..+...++++...+|++|... +.+.+++|.++|++ |+++|
T Consensus 123 ~~~~~~~~--------------d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~-s~~~~~~l~~~~~~~~~~~~~~~i 187 (388)
T PRK08637 123 IFDEDGGF--------------DTDALKEALQAAYNKGKVIVILNFPNNPTGYTP-TEKEATAIVEAIKELADAGTKVVA 187 (388)
T ss_pred ccCCCCcC--------------CHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEE
Confidence 42 22233 88999888872 112334444443345555443 34459999999886 99999
Q ss_pred EEecccccc-ccccCc-c--ccccCCCcc---h--hhhhhhcc-CCcccccccc------cHHHHHHhcCCC-CcccccC
Q 015230 221 IFDEVMTGF-RLAYGG-A--QEYFGVTPD---L--TTLGKIIG-GGLPVGAYGG------RRDIMEMVAPAG-PMYQAGT 283 (411)
Q Consensus 221 i~De~~~g~-~~g~~~-~--~~~~~~~~d---~--~~~sK~~~-~G~~~g~~~~------~~~~~~~~~~~~-~~~~~~t 283 (411)
|+||+|.+| ..+... . ....+.... + .++||.++ +|+|+||++. ++++++.+.... .......
T Consensus 188 I~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (388)
T PRK08637 188 VVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNI 267 (388)
T ss_pred EecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhccc
Confidence 999999988 444211 0 111121222 2 28999887 7999999974 367766664200 0011123
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHHHHHHH-------HHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchh
Q 015230 284 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKI-------TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 356 (411)
Q Consensus 284 ~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (411)
++.+.++++++.++++ +....++.++. .+.+.+.|++......+.......|+++|+.+..
T Consensus 268 ~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~--------- 335 (388)
T PRK08637 268 SNGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG--------- 335 (388)
T ss_pred CCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh---------
Confidence 4567788888877764 22233333333 3333333333210001222334568888987731
Q ss_pred cccchHHHHHHHHHHH-HcCeEeccCCCcceeeecC-CCHHHHHHHHHHHHHHHHhC
Q 015230 357 KKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 357 ~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~~-~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+..++.+.|. ++||.+.+.+.+.+|+++. .+++++++++++|.++++.+
T Consensus 336 -----~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 336 -----VDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred -----HHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 12367888885 6799887766667999865 58999999999999998764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=179.81 Aligned_cols=330 Identities=16% Similarity=0.153 Sum_probs=217.2
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCC--------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP--------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~--------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
.|+|..+. .+ .+|++++++...++...++..+ ....++..+.+++.++ .+++|+||+||||++..
T Consensus 3 iYlD~~AT---Tp---~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl 76 (386)
T COG1104 3 IYLDNAAT---TP---VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL 76 (386)
T ss_pred cccccccc---CC---CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence 46776666 44 6899999999999984222111 3445667777778888 67999999999999999
Q ss_pred HHHHHH-hc---cCCcEEEEEeCCcCCCchhhhhhc--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 108 VLRLAR-AF---TGRERIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 108 al~~~~-~~---~~~~~vi~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
||+.+. .+ .++.++|+..-..+...+....+. |.++-+++.. ..|.. |+++|+++++
T Consensus 77 aI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~-~~G~v-------------~~e~L~~al~--- 139 (386)
T COG1104 77 AIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVD-SNGLV-------------DLEQLEEALR--- 139 (386)
T ss_pred HHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCC-CCCeE-------------cHHHHHHhcC---
Confidence 998632 22 245678887777776666655552 3334443332 24433 8999999998
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhh-hccCCcccc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVG 260 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK-~~~~G~~~g 260 (411)
+++.+|.+..+||+.|+++| +++|.++|+++++++++|.+|+ .|+. ..+......|+.|||- .|+|.=.+|
T Consensus 140 ~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa---~Gki-pi~~~~~~vD~ls~SaHK~~GpkGiG 211 (386)
T COG1104 140 PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA---VGKI-PIDLEELGVDLLSFSAHKFGGPKGIG 211 (386)
T ss_pred CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh---cCce-eccccccCcceEEeehhhccCCCceE
Confidence 46899999999999999999 9999999999999999999997 4432 2333333468888874 333211288
Q ss_pred cccccHHH-HHHhcCCCCccc-ccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE-Ee
Q 015230 261 AYGGRRDI-MEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GG 335 (411)
Q Consensus 261 ~~~~~~~~-~~~~~~~~~~~~-~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 335 (411)
+++.++.. +..+..+...-. ..+-+.|..+.++..++++...+ +...++++++.+++.+.|.+......+... ..
T Consensus 212 aLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~ 291 (386)
T COG1104 212 ALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEP 291 (386)
T ss_pred EEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccc
Confidence 88765543 121211110000 01224455666666666665443 556677777777787777765221111111 12
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc-----------------------eee--ec
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-----------------------GFT--SL 390 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~-----------------------~~~--~~ 390 (411)
.....+.+-++. ...+.+...|..+||.++.+..+. +|+ ..
T Consensus 292 rlP~~~~~~f~g--------------v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~ 357 (386)
T COG1104 292 RLPNILNFSFPG--------------VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGR 357 (386)
T ss_pred CCCCeEEEEeCC--------------CcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCC
Confidence 233444454432 233778888888899999885443 565 45
Q ss_pred CCCHHHHHHHHHHHHHHHHhC
Q 015230 391 AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+|++|++.+++.+.++++++
T Consensus 358 ~tt~eei~~~~~~l~~~i~~l 378 (386)
T COG1104 358 FTTEEEIDAAAEALKEIIKRL 378 (386)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999988763
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=186.55 Aligned_cols=315 Identities=18% Similarity=0.139 Sum_probs=200.9
Q ss_pred CCcHHHHHHHHHHHHcCCCC----CCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc--cCCcEEEEE
Q 015230 52 HADDQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKF 124 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~--~~~~~vi~~ 124 (411)
+.+|.+++++.+++...... .......+++.+++++.++ ..+.+++++||++++..+++.++.. .+++.|++.
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~ 110 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVP 110 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEec
Confidence 47899999999888763211 1223445788999999887 4557899999999999999866443 235678877
Q ss_pred eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 125 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
++++... .......|.++..++...... .|++++++.++. +++++++..+++++|.+.+
T Consensus 111 ~~~h~s~-~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~~--- 169 (371)
T PRK13520 111 ESAHFSF-DKAADMLGVELRRAPLDDDYR--------------VDVKAVEDLIDD---NTIGIVGIAGTTELGQVDP--- 169 (371)
T ss_pred CcchHHH-HHHHHHcCceEEEecCCCCCc--------------CCHHHHHHHHhh---CCEEEEEEcCCcCCcccCC---
Confidence 7766543 222233344444433221111 189999999973 3444454445667899988
Q ss_pred HHHHHHHHHHHhCCEEEEecccccc-c-cccC---ccccccCCCcchhh--hhhhccCCccccccc-ccHHHHHHhcCCC
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGF-R-LAYG---GAQEYFGVTPDLTT--LGKIIGGGLPVGAYG-GRRDIMEMVAPAG 276 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~-~-~g~~---~~~~~~~~~~d~~~--~sK~~~~G~~~g~~~-~~~~~~~~~~~~~ 276 (411)
+++|.++|++||+++++|++|+++ . .... +..... ..|.++ ..|+..+|+|+|+++ .++++++.+....
T Consensus 170 -l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~ 246 (371)
T PRK13520 170 -IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDT 246 (371)
T ss_pred -HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCccCCceEEEEcCHHHHHhhcccC
Confidence 999999999999999999999855 1 1111 111111 234433 457555678898775 4666776654222
Q ss_pred Cccccc-----CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecC
Q 015230 277 PMYQAG-----TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348 (411)
Q Consensus 277 ~~~~~~-----t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 348 (411)
+...+. ..+.+...++++.++++.+.. ++.+++..++.+++++.|+++ ++.........++.+.+.
T Consensus 247 ~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~~-- 320 (371)
T PRK13520 247 PYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER----GFEPVIEPVLNIVAFDDP-- 320 (371)
T ss_pred ccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC----CCEEecCCCceEEEEecC--
Confidence 211110 012233456667777776544 356777888888888887765 322112223445555442
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-cceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+++.+.|.++||.+.+... ..+|+ +..+|++|++++++.|++++++
T Consensus 321 --------------~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 371 (371)
T PRK13520 321 --------------NPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKKR 371 (371)
T ss_pred --------------CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence 136889999999999988653 34776 4568999999999999988753
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=184.14 Aligned_cols=318 Identities=17% Similarity=0.199 Sum_probs=206.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCC--EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~--~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|.+++++........ ....+..+++.+.+++.++ ..+ .+++++||++++..++... ..+++++++..++++
T Consensus 10 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~--~~~~~~vi~~~~~~~ 85 (355)
T TIGR03301 10 TSATVRDAMLVDWCHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL--VPRDGKLLVLINGAY 85 (355)
T ss_pred CCHHHHHHhhhhccCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc--cCCCCeEEEECCCch
Confidence 56778887766322211 1123667888999999887 333 6788999999999999753 345677888887776
Q ss_pred CCc-hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.. .......|.++..++.+..... |++++++.+++++ +.+++++..+++.+|...+ +++
T Consensus 86 ~~~~~~~a~~~g~~~~~i~~~~~~~~--------------d~~~l~~~l~~~~-~~~~v~~~~~~~~~G~~~~----~~~ 146 (355)
T TIGR03301 86 GERLAKICEYLGIPHTDLNFSEYEPP--------------DLNRIEEALAADP-DITHVATVHHETTTGILNP----LEA 146 (355)
T ss_pred hhHHHHHHHHcCCceEEEecCCCCCC--------------CHHHHHHHHHhCC-CceEEEEEecCCcccchhH----HHH
Confidence 642 2233334544444333221121 8899999988542 4455555555666788888 999
Q ss_pred HHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcc---------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY--------- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~--------- 279 (411)
|.++|++|++++|+|++++ + .+..+.+..++.+..+.+++|+++|+..+|++++++++++.+......+
T Consensus 147 i~~l~~~~~~~livD~~~s-~-g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T TIGR03301 147 IAKVARSHGAVLIVDAMSS-F-GAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWA 224 (355)
T ss_pred HHHHHHHcCCEEEEEeccc-c-CCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHH
Confidence 9999999999999999886 2 1112223333444445689999875434799999999888765211100
Q ss_pred -----cccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEEecCC
Q 015230 280 -----QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGP 349 (411)
Q Consensus 280 -----~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 349 (411)
....++.+..++.++.++++.+.+ ++.+++++++.+++++.|+++.. ..... ....+.++++.+....
T Consensus 225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~--~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
T TIGR03301 225 YMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGF--QPLLPERWQSPIIVSFLYPDDP 302 (355)
T ss_pred HhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCC--eeecCCCCCCCcEEEEECCCCC
Confidence 012346677777777778876643 34556677778888888876521 11111 1223456677663210
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---cceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
..+..++.+.|.++||.+.++.. +.+|++ ..+++++++++++.|++++
T Consensus 303 -----------~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 303 -----------DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred -----------cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 12236889999999999988753 457884 4569999999999998763
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-22 Score=184.41 Aligned_cols=302 Identities=12% Similarity=0.095 Sum_probs=185.8
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCC
Q 015230 77 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 156 (411)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 156 (411)
...++.+.+++.+ +.+.+++++|+++++..++... ..+++.|++..+.+++.+ ......|..+..++......+.
T Consensus 52 ~~~~~~e~lA~~~-g~~~~~i~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~h~s~~-~~~~~~g~~~~~~~~~~~~~~~- 126 (370)
T TIGR02539 52 PIHDFLEDLAEFL-GMDEARVTHGAREGKFAVMHAL--CKEGDWVVLDGLAHYTSY-VAAERAGLNVKEVPHTGHPEYK- 126 (370)
T ss_pred HHHHHHHHHHHHh-CCCceEEECChHHHHHHHHHHh--hCCCCEEEECCcccHHHH-HHHHHcCCEEEEEecCCcccCC-
Confidence 4556667777777 5556778999999999988743 245566777666665544 2333444433332211000110
Q ss_pred CCCCceeecCCCCHHHHHHHHHcC----CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 157 GATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 157 ~~~~~~~~~~~~d~~~l~~~~~~~----~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
.|++++++.+++. .+++++|+++.++++.|.+.+ +++|.++|++||+++|+||+|+....+
T Consensus 127 -----------~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~~g~~~ 191 (370)
T TIGR02539 127 -----------VDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYTVGRMP 191 (370)
T ss_pred -----------cCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECccccCCcC
Confidence 1899999988642 125667777777788899888 999999999999999999999721111
Q ss_pred cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCC-----CCCHHHHHHHHHHHHHHhc--CC
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL-----SGNPLAMTAGIHTLKRLKE--PG 305 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~-----~~~~~~~a~~~~~l~~~~~--~~ 305 (411)
. ....++.+.-+.|+||++++|.|+|++++++++++.+......+..++. +....++.++.++++...+ +.
T Consensus 192 ~--~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~ 269 (370)
T TIGR02539 192 V--SAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKR 269 (370)
T ss_pred C--CHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHH
Confidence 0 1111222222458999999777899999999999988754322211111 1111244445555553222 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCce--EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeE-eccCC
Q 015230 306 TYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPSQ 382 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~~ 382 (411)
. .+..++.+++++.|+++ ++.. .......++.+++...... ..++......+.+.|+++||+ +.++.
T Consensus 270 ~-~~~~~~~~~l~~~L~~~----g~~~~~~~~s~t~~v~~~~~~~~~~-----~~~~~~~~~~~~~~L~e~GI~~ir~~~ 339 (370)
T TIGR02539 270 W-DEEVKKTRWFVAELEDI----GFIQLGQKPKEHDLVKFETPGFHEI-----AQKHKRRGYFLYEELKKRGIHGIRSGQ 339 (370)
T ss_pred H-HHHHHHHHHHHHHHHhC----CcEEEccCCCcCceEEEECCchhHH-----hhhhccccHHHHHHHHhCCCccccCCc
Confidence 2 22233356777888775 3221 1123466666665311000 001112236789999999998 77765
Q ss_pred Ccceeee-cCCCHHHHHHHHHHHHHHHHh
Q 015230 383 FEAGFTS-LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ~~~~~~~-~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...+|++ ..+|++++++++++|++++++
T Consensus 340 ~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 340 TKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 5568886 567999999999999998875
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=184.72 Aligned_cols=330 Identities=12% Similarity=0.064 Sum_probs=205.5
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCC---C-----CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 48 AIIGHADDQVLAALGETMKKGTSF---G-----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~---~-----~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.-.|..++.+++++.+........ . .......++.+.+++.+ +.+++++++|+++++..++... ..+++
T Consensus 27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~-g~~~~~~~~g~t~a~~~al~~l--~~~gd 103 (387)
T PRK09331 27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL-GMDEARVTHGAREGKFAVMHSL--CKKGD 103 (387)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHh--cCCCC
Confidence 446668889999999887542110 1 11345678888888888 4567889999999999999753 34567
Q ss_pred EEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC----CCcEEEEEEcccCCC
Q 015230 120 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVGN 195 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~~~~~vi~~~~~~~ 195 (411)
.|++...++.+... ++...|..+..++.....+.. .|++++++.+++. .+++++|+++.++++
T Consensus 104 ~Vlv~~~~h~s~~~-~~~~~G~~~~~v~~~~~~~~~------------~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~ 170 (387)
T PRK09331 104 YVVLDGLAHYTSYV-AAERAGLNVREVPKTGYPEYK------------ITPEAYAEKIEEVKEETGKPPALALLTHVDGN 170 (387)
T ss_pred EEEECCCchHHHHH-HHHHcCCEEEEEeCccCcCCC------------cCHHHHHHHHHHhhhccCCCCEEEEEECCCCC
Confidence 77777666665443 334445544443321011110 1899999988753 236788888888888
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
+|.+.+ +++|.++|++||+++|+|++|+ .|. .+....++.+..+.+++|+++++.++|++++++++++.+..
T Consensus 171 tG~~~~----l~~I~~la~~~g~~livD~a~~---~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~ 243 (387)
T PRK09331 171 YGNLAD----AKKVAKVAHEYGIPFLLNGAYT---VGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFR 243 (387)
T ss_pred Cccccc----HHHHHHHHHHcCCEEEEECCcc---cCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhccc
Confidence 999988 9999999999999999999997 221 12222345555567899999977789999999998887754
Q ss_pred CCCcc-------cccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEE--eeecceEEEE
Q 015230 275 AGPMY-------QAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG--GYISGMFGFF 344 (411)
Q Consensus 275 ~~~~~-------~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~g~~~~~~ 344 (411)
....+ .+.+. .+....+..++++.+.+ .+..++..++.+++++.|+++. ++.... .....++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~--~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~---g~~~~~~~~~~~~i~~~~ 318 (387)
T PRK09331 244 TSRKFGVKEVELLGCTL--RGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIE---GFKQLGEKPRNHDLMKFE 318 (387)
T ss_pred ccCCCcccceeeeceec--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEeccCcCcCCeEEEe
Confidence 32211 11122 22233333444544332 2234555667777777777651 111110 1123344444
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEec-cCCCcceee-ecCCCHHHHHHHHHHHHHHHHh
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA-PSQFEAGFT-SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-~~~~~~~~~-~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..... . ...........+.+.|.++||... ++....+++ ...+|++++++++++|++++++
T Consensus 319 ~~~~~--~---~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 319 TPSFD--E---IAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred CCchh--H---HhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 32100 0 000011123578999999999953 443334555 4567999999999999998765
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=184.15 Aligned_cols=316 Identities=16% Similarity=0.133 Sum_probs=201.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~ 130 (411)
.++++.+++.+.+.. ..+....+..+++.+.+++.++ . .+.+++++||++|+..++... ..+++.|++..+++++
T Consensus 10 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~--~~~g~~vl~~~~~~~~ 86 (356)
T cd06451 10 VPPRVLKAMNRPMLG-HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL--LEPGDKVLVGVNGVFG 86 (356)
T ss_pred CCHHHHHHhCCCccC-CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh--CCCCCEEEEecCCchh
Confidence 567777777544322 1111124446788899998887 3 346789999999999988743 3456778887776665
Q ss_pred C-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHH
Q 015230 131 H-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209 (411)
Q Consensus 131 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i 209 (411)
. ........|.++..++...... .|++++++.++. ++++++++.++++++|.+.+ +++|
T Consensus 87 ~~~~~~~~~~g~~~~~v~~~~~~~--------------~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~----~~~i 146 (356)
T cd06451 87 DRWADMAERYGADVDVVEKPWGEA--------------VSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNP----LEGI 146 (356)
T ss_pred HHHHHHHHHhCCCeEEeecCCCCC--------------CCHHHHHHHHhc--cCCCEEEEeccCCCcccccC----HHHH
Confidence 3 2233334455444433221111 188999999874 25677777777777898888 9999
Q ss_pred HHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC--CCCccc------
Q 015230 210 RRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQ------ 280 (411)
Q Consensus 210 ~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~--~~~~~~------ 280 (411)
.++|++||+++++|++|+ + |. ......++.+.-+.+.+|+++++..+|+++.++++++.+.. ....+.
T Consensus 147 ~~~a~~~~~~li~D~~~~-~--g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (356)
T cd06451 147 GALAKKHDALLIVDAVSS-L--GGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLL 223 (356)
T ss_pred HHHHHhcCCEEEEeeehh-c--cCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHH
Confidence 999999999999999996 2 21 11122223332244678999965568999999888877652 110000
Q ss_pred --------ccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEecC
Q 015230 281 --------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEG 348 (411)
Q Consensus 281 --------~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 348 (411)
....+.++.++++..++++.+.. +++.++.+++.+++++.|+++.. .......+ .+.++++.+..
T Consensus 224 ~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~~~~~~~~~~~~- 300 (356)
T cd06451 224 LKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGL--KLLAKPELRSPTVTAVLVPE- 300 (356)
T ss_pred HhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC--eeccCcccCCCceEEEECCC-
Confidence 11223455556666677766544 45667777888888888876521 11111112 23334444421
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCC----cceeee--cCCCHHHHHHHHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTS--LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~--~~~t~~~i~~~i~~l~~~~~ 409 (411)
..+...+++.|.++ ||.+.++.. ..+|++ ..+|++++++++++|+++++
T Consensus 301 ------------~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 301 ------------GVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred ------------CCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 11246889999999 999987632 347774 46899999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=180.11 Aligned_cols=324 Identities=15% Similarity=0.137 Sum_probs=209.0
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCC-------CHHHHHHHHHHHhhCC--CCCEEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAP-------CLLENVLAEMVISAVP--SIEMVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~-------~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a 104 (411)
..|+|..+. .+ .++.+++++.+.++..... .+. .+..+++.+.+++.++ .+++|+||+|++++
T Consensus 24 ~iYld~a~~---~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 24 LAYLDSAAS---AQ---KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred eEEEeCccc---cc---CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 467775554 33 6788999998888752211 111 2335677778888886 36799999999999
Q ss_pred HHHHHHHHH--hccCCcEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 105 CMGVLRLAR--AFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 105 ~~~al~~~~--~~~~~~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
+..++.... ...+++.|++.+..|++....... ..|..+..++......+ |++++++.++
T Consensus 98 l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~--------------d~~~l~~~i~- 162 (406)
T PRK09295 98 INLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTL--------------QLETLPALFD- 162 (406)
T ss_pred HHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCC--------------CHHHHHHhcC-
Confidence 998886431 234567888888888765443322 23433333332211111 7899988886
Q ss_pred CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcch--hhhhhhccCCc
Q 015230 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGL 257 (411)
Q Consensus 180 ~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~ 257 (411)
+++++|++..+++++|.+.+ +++|.++|+++|+++++|++|+-.. .......+ .+|+ .+++|.++. -
T Consensus 163 --~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~~--~~D~~~~s~~K~~gp-~ 231 (406)
T PRK09295 163 --ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQAVMH--HPVDVQAL--DCDFYVFSGHKLYGP-T 231 (406)
T ss_pred --CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccccCc--cccCchhc--CCCEEEeehhhccCC-C
Confidence 35788888888888999998 9999999999999999999996111 11122222 3454 467796662 1
Q ss_pred ccccccccHHHHHHhcCCCCc-------------------ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHH
Q 015230 258 PVGAYGGRRDIMEMVAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITG 315 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~-------------------~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~ 315 (411)
.+|++++++++++.+.+.... ....+-+.+..+..+..++++.+.+ ++..++.+++.+
T Consensus 232 G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 311 (406)
T PRK09295 232 GIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMH 311 (406)
T ss_pred CcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 279999998887765421000 0001225667777777788887654 455566777777
Q ss_pred HHHHHHHHHHHhcCCceEEe--eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------
Q 015230 316 ELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------- 383 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------- 383 (411)
++++.|+++ +...... ..+.++.|.+... ....+.+.|.++||.++.+..
T Consensus 312 ~l~~~l~~~----~~~~~~~~~~~~~iv~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~ 373 (406)
T PRK09295 312 YALSQLESV----PDLTLYGPQNRLGVIAFNLGKH--------------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_pred HHHHHHhcC----CCEEEeCCCCCceEEEEEECCc--------------CHHHHHHHHHhCCeEEeccccchHHHHHHHC
Confidence 777776654 2211111 1244555555321 124677788899999987642
Q ss_pred --cceee--ecCCCHHHHHHHHHHHHHHHH
Q 015230 384 --EAGFT--SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 384 --~~~~~--~~~~t~~~i~~~i~~l~~~~~ 409 (411)
..+|+ ....|++|+|++++.|+++..
T Consensus 374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 23666 467899999999999998754
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=176.18 Aligned_cols=314 Identities=21% Similarity=0.201 Sum_probs=220.1
Q ss_pred CcHHHHHHHHHHHHcCC---CCCC------CCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHh-ccCCcE
Q 015230 53 ADDQVLAALGETMKKGT---SFGA------PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARA-FTGRER 120 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~---~~~~------~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~-~~~~~~ 120 (411)
.+..+.+++.+...+.. +.+. .++..++..+.+++.++ . .+.|+||.+.|+++..+...... ..+++.
T Consensus 34 ~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gde 113 (405)
T COG0520 34 KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDE 113 (405)
T ss_pred CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCE
Confidence 68889999998886531 1111 14456777788888887 5 58999999999999998874321 456689
Q ss_pred EEEEeCCcCCCchhhhhhcC---CCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 121 IIKFEGCYHGHADPFLVKAG---SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 121 vi~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
||+.+-.+|++......+.. ..+..++.. ..+.. +.+++++.+. +++++|.+..+.|.+|
T Consensus 114 Iv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~-------------~~~~~~~~i~---~~Tklvais~vSn~tG 176 (405)
T COG0520 114 IVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGLL-------------DLDALEKLIT---PKTKLVALSHVSNVTG 176 (405)
T ss_pred EEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCCc-------------CHHHHHHhcC---CCceEEEEECcccccc
Confidence 99999999998877776653 334444433 22322 7888888665 6799999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhh--hhccCCcccccccccHHHHHHhcCC
Q 015230 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPA 275 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~~~~~~~~~~~ 275 (411)
.+.| +++|.++||++|+++++|.+|+ .+ ....+.-....|+..|| |++.|..-+|.+++++++.+.+.+.
T Consensus 177 ~~~p----v~~I~~la~~~ga~v~VDaaq~---~~-h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~ 248 (405)
T COG0520 177 TVNP----VKEIAELAHEHGALVLVDAAQA---AG-HLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPF 248 (405)
T ss_pred ccch----HHHHHHHHHHcCCEEEEECccc---cC-ccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCc
Confidence 9999 9999999999999999999996 22 12233333456766554 9777633389999999999988542
Q ss_pred CCcc---------cccCC----------CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCc-e
Q 015230 276 GPMY---------QAGTL----------SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA-I 332 (411)
Q Consensus 276 ~~~~---------~~~t~----------~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 332 (411)
.... ...++ +++........++++.+++ +++.++.+++..++.++|+++ +.. .
T Consensus 249 ~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~----~~v~i 324 (405)
T COG0520 249 LGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSEL----PGVEI 324 (405)
T ss_pred ccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----CCeEE
Confidence 1100 00011 3333444444556665555 566777777777777777776 322 2
Q ss_pred EEe---eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc------------eee--ecCCCHH
Q 015230 333 CGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA------------GFT--SLAHSSD 395 (411)
Q Consensus 333 ~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~------------~~~--~~~~t~~ 395 (411)
... .++.++.|.+... ....+.+.|.++||.++.+..+. +|+ .++.|++
T Consensus 325 ~g~~~~~r~~~vsF~v~~~--------------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~e 390 (405)
T COG0520 325 YGPPDADRGGIVSFNVKGI--------------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEE 390 (405)
T ss_pred ecCCcccCceEEEEEeCCC--------------CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHH
Confidence 111 3577888877543 23789999999999999886553 565 4788999
Q ss_pred HHHHHHHHHHHHHH
Q 015230 396 DIQHTITAAEKVLR 409 (411)
Q Consensus 396 ~i~~~i~~l~~~~~ 409 (411)
|+|++++.|+++..
T Consensus 391 did~l~~aL~~~~~ 404 (405)
T COG0520 391 DVDRLLEALKKALA 404 (405)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998753
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=177.19 Aligned_cols=319 Identities=16% Similarity=0.151 Sum_probs=203.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC--CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.++.+.+++.+.... ......+..+++.+.+++.++ .. +.+++|+||+++++.++..+ ..+++++++..++++
T Consensus 14 ~~~~v~~~~~~~~~~--~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l--~~~~~~vlv~~~~~~ 89 (363)
T TIGR02326 14 TSRTVKEAMLFDWCT--WDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA--VPKDGKLLVVINGAY 89 (363)
T ss_pred CCHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc--CCCCCeEEEEeCChh
Confidence 455566555443311 011224445677788888887 33 47999999999999999743 245667777777777
Q ss_pred CCc-hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.. .......|..+..++.+..... |++++++.++.++ +++++.+..+.+++|.+.+ +++
T Consensus 90 ~~~~~~~a~~~g~~~~~v~~~~~~~~--------------d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~----i~~ 150 (363)
T TIGR02326 90 GARIVQIAEYLGIPHHVVDTGEVEPP--------------DVVEVEAILAADP-AITHIALVHCETTTGILNP----IEA 150 (363)
T ss_pred hHHHHHHHHHcCCceEEEeCCCCCCC--------------CHHHHHHHHhhCC-CccEEEEEeecCCccccCc----HHH
Confidence 653 2223334544444433322222 8999999988642 3456666666777899998 999
Q ss_pred HHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcc--------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY-------- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~-------- 279 (411)
|.++|++||+++++|++|+ + | ....+..++.+.-+.+++|+++|+..+|+++++++.++.+......+
T Consensus 151 I~~l~~~~g~~livD~~~~-~--g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (363)
T TIGR02326 151 VAKLAHRHGKVTIVDAMSS-F--GGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQW 227 (363)
T ss_pred HHHHHHHcCCEEEEEcccc-c--cCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHH
Confidence 9999999999999999986 2 2 12223333333334588999976444799999988877654211100
Q ss_pred -------cccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEec
Q 015230 280 -------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTE 347 (411)
Q Consensus 280 -------~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~ 347 (411)
....++.+...+.+..++++.+.+ ++..++++++..++++.|+++.. ...... ...+.+.++.+..
T Consensus 228 ~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~~~~~~~~~~~~ 305 (363)
T TIGR02326 228 RCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGF--EPLLDDEIQSPIITSFYSPE 305 (363)
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCC--eeccCcccCCceEEEEECCC
Confidence 012345677777777777766543 34567777888888888776521 111111 1223445565532
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.. ..+...+.+.|.++||.+.++. .+.+|++ ...+.+++++++++|++++..
T Consensus 306 ~~-----------~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~~ 362 (363)
T TIGR02326 306 DP-----------DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMYW 362 (363)
T ss_pred CC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhCC
Confidence 10 1123678899999999999884 2457885 456999999999999998753
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-20 Score=175.10 Aligned_cols=317 Identities=14% Similarity=0.127 Sum_probs=197.3
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCC-----CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
.|+|..+. |..++.+++++.+.+..... ..+. .+..+++.+.+++.++ ..+++++++|+++++..
T Consensus 19 ~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~ 92 (397)
T TIGR01976 19 VFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFL 92 (397)
T ss_pred EEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHH
Confidence 56664333 34788999999998875311 1121 2345788888888887 55689999999999887
Q ss_pred HHHHHHh-ccCCcEEEEEeCCcCCCchhh---hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 108 VLRLARA-FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 108 al~~~~~-~~~~~~vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
++..... ..+++.|++.++.|++..... ....|..+..++.....+.. |++++++.++ ++
T Consensus 93 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~l~~~i~---~~ 156 (397)
T TIGR01976 93 LSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGEL-------------HPDDLASLLS---PR 156 (397)
T ss_pred HHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCc-------------CHHHHHHhcC---CC
Confidence 7654322 345678888887777654332 22345444443322111111 7889988886 35
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcch--hhhhhhccCCcccc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDL--TTLGKIIGGGLPVG 260 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~--~~~sK~~~~G~~~g 260 (411)
+++++++.+++++|.+.+ +++|.++|++||+++++|++|+ .|. ......+ .+|+ .+++|+++ .|+|
T Consensus 157 ~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~---~~~~~~~~~~~--~~d~~~~s~~K~~g--~~~G 225 (397)
T TIGR01976 157 TRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY---APHGLIDVQAT--GADFLTCSAYKFFG--PHMG 225 (397)
T ss_pred ceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh---ccccCCCHHHc--CCCEEEEechhhcC--CceE
Confidence 788888888888999888 9999999999999999999995 121 1112222 3454 47899985 4799
Q ss_pred cccccHHHHHHhcCCCCccccc-------CCCCCHHHHHHHHHHHHHHhcC-----------------ChHHHHHHHHHH
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAG-------TLSGNPLAMTAGIHTLKRLKEP-----------------GTYEYLNKITGE 316 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~-------t~~~~~~~~a~~~~~l~~~~~~-----------------~~~~~~~~~~~~ 316 (411)
++++++++++.+.+....+... ..+.+....++..++++.+.+. +..++..+..++
T Consensus 226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (397)
T TIGR01976 226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY 305 (397)
T ss_pred EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999888776432211111 1133444555555666655331 112333444444
Q ss_pred HHHHHHHHHHhcCCceEE-----eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---------
Q 015230 317 LTQGIIDAGKKAGHAICG-----GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------- 382 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------- 382 (411)
+++.|+++ +..... ...+.++.+.+.. .....+.+.|.++||.+..+.
T Consensus 306 l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~ 367 (397)
T TIGR01976 306 LLVGLSDL----PGVTLYGVARLAARVPTVSFTVHG--------------LPPQRVVRRLADQGIDAWAGHFYAVRLLRR 367 (397)
T ss_pred HHHHHhcC----CCEEEeCCCCccCCCceEEEEeCC--------------cCHHHHHHHHHHCCeEEEeCccchHHHHHH
Confidence 44544443 311111 1134555555421 113578999999999998651
Q ss_pred ------Ccceee--ecCCCHHHHHHHHHHH
Q 015230 383 ------FEAGFT--SLAHSSDDIQHTITAA 404 (411)
Q Consensus 383 ------~~~~~~--~~~~t~~~i~~~i~~l 404 (411)
...+|+ ...+|++|++++++.|
T Consensus 368 ~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 368 LGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred hCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 124776 4678999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-20 Score=176.69 Aligned_cols=317 Identities=16% Similarity=0.154 Sum_probs=202.6
Q ss_pred cCCCcHHHHHHHHHHHHcCCC--CCCC-------CHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHH--hcc
Q 015230 50 IGHADDQVLAALGETMKKGTS--FGAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLAR--AFT 116 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~~--~~~~-------~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~--~~~ 116 (411)
.|..++.+.+++.+.++.... .... .+..+++.+.+++.++ . ++++++++|+++++..++.... ...
T Consensus 27 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~ 106 (403)
T TIGR01979 27 TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLK 106 (403)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCC
Confidence 344678899999888765321 1111 1234577777888887 4 5799999999999988886431 134
Q ss_pred CCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 117 GRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
+++.|++.++.|++...... ...|..+..++.. ..+.. |++++++.++ ++++++++..++
T Consensus 107 ~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~-~~~~~-------------~~~~l~~~i~---~~~~lv~~~~~~ 169 (403)
T TIGR01979 107 AGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD-DDGTL-------------DLDDLEKLLT---EKTKLVAITHVS 169 (403)
T ss_pred CCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC-CCCCC-------------CHHHHHHHhc---cCCeEEEEEccc
Confidence 56778888887776443222 2334444443322 11111 7889988886 367788888888
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcch--hhhhhhccCCcccccccccHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIME 270 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~ 270 (411)
+.+|.+.+ +++|.++|++||+++++|++|+ .|. ......+ .+|+ .+++|.++. ..+|++++++++++
T Consensus 170 ~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~---~g~~~~~~~~~--~~d~~~~s~~K~~gp-~G~g~l~~~~~~~~ 239 (403)
T TIGR01979 170 NVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA---VPHMPVDVQAL--DCDFYVFSGHKMYGP-TGIGVLYGKEELLE 239 (403)
T ss_pred ccccccCC----HHHHHHHHHHcCCEEEEEchhh---cCccccCcccc--CCCEEEEecccccCC-CCceEEEEchHHHh
Confidence 88999999 9999999999999999999996 121 1112222 3454 478898762 12888888888877
Q ss_pred HhcCCCCc------------------ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 271 MVAPAGPM------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 271 ~~~~~~~~------------------~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
.+.+.... .....-+.+..+..+..++++.+.+ ++..++..+..+++++.|+++ +
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~----~ 315 (403)
T TIGR01979 240 QMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEI----P 315 (403)
T ss_pred cCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----C
Confidence 66421100 0000113455566666677776544 455666667777776666654 2
Q ss_pred CceEEe-----eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------------Ccceeee--c
Q 015230 330 HAICGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------FEAGFTS--L 390 (411)
Q Consensus 330 ~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------------~~~~~~~--~ 390 (411)
...... ..+.++.+.+.+. ...++.+.|.++||.+.++. ...+|++ .
T Consensus 316 g~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~ 381 (403)
T TIGR01979 316 GLRIYGPRDAEDRGGIISFNVEGV--------------HPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYI 381 (403)
T ss_pred CEEEeCCCCccccCceEEEEeCCc--------------CHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEecc
Confidence 221111 2356767766321 12567889999999998653 2346774 5
Q ss_pred CCCHHHHHHHHHHHHHHHHhC
Q 015230 391 AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+|++|+++++++|+++++.+
T Consensus 382 ~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 382 YNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 679999999999999988754
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-20 Score=176.59 Aligned_cols=354 Identities=13% Similarity=0.063 Sum_probs=202.7
Q ss_pred CCCEEEeccCCccccc-cCC-CcH---HHHHHHHHHHHcCC-CCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAI-IGH-ADD---QVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 107 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~-~g~-~~~---~v~~a~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~ 107 (411)
.|..++++.++ .+ ..+ .++ .+.+++.+++..+. .|+ ...-..++.+.+++.+ +.+++++|+||++|+..
T Consensus 34 ~g~~~~~L~~g---~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~-~~~g~~~Lreaia~~~-~~~~vv~t~ggt~A~~~ 108 (460)
T PRK13238 34 AGYNPFLLKSE---DVFIDLLTDSGTGAMSDRQWAAMMRGDEAYA-GSRSYYRLEDAVKDIF-GYPYTIPTHQGRAAEQI 108 (460)
T ss_pred cCCCEEeCCCC---CCCCCCCCCCCchhhhHHHHHHHHhCCcccC-CCCCHHHHHHHHHHHh-CCCcEEECCCHHHHHHH
Confidence 46677777776 44 244 222 47888888886643 232 2222344444454444 56789999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAA 186 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~ 186 (411)
+++.. ..+++ |++.++.|. .+.......|..+..++........ ....+... -|++++++.+.... +++++
T Consensus 109 ~~~al--l~pGD-Vii~~p~~~-~~~~~i~~~G~~~v~v~~~~~~~~~---~~~~f~g~-id~e~Le~~i~~~~~~~tk~ 180 (460)
T PRK13238 109 LFPVL--IKKGD-VVPSNYHFD-TTRAHIELNGATAVDLVIDEALDTG---SRHPFKGN-FDLEKLEALIEEVGAENVPF 180 (460)
T ss_pred HHHHh--CCCCC-EEccCCccc-chHHHHHHcCCEEEEEecccccccc---ccccccCC-cCHHHHHHHHhhcCCCceeE
Confidence 98742 33445 766666555 4444455556555444332110000 00000000 18999999998532 46888
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-c-c-ccc----cCccccccCCCcchhhhhhhcc-CCcc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G-F-RLA----YGGAQEYFGVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g-~-~~g----~~~~~~~~~~~~d~~~~sK~~~-~G~~ 258 (411)
++++..+|++|....+.+.+++|+++|++||++||+|++|. + . ... ........++...+.+++|.++ +|++
T Consensus 181 Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K 260 (460)
T PRK13238 181 IVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKK 260 (460)
T ss_pred EEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEeccc
Confidence 88887777766555556669999999999999999999884 1 1 100 0000000001112235566555 3554
Q ss_pred c-----c-ccccc-HHHHHHhcCCCCccc-ccCCCCCHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 259 V-----G-AYGGR-RDIMEMVAPAGPMYQ-AGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 259 ~-----g-~~~~~-~~~~~~~~~~~~~~~-~~t~~~~~~~-~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
+ | +++++ +++++.++......+ ..|+++.... +++...+++...+++..+...++.+++.+.|++. +
T Consensus 261 ~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~----G 336 (460)
T PRK13238 261 DAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA----G 336 (460)
T ss_pred CCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC----C
Confidence 3 4 44555 578888765322222 2366665555 4444445544334455555555668888888774 5
Q ss_pred CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----------------CcceeeecC
Q 015230 330 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------------FEAGFTSLA 391 (411)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~-----------------~~~~~~~~~ 391 (411)
+.......|+++++++.+.. ..+. ...-....++..| .+.||.+.+++ ...+|+.+.
T Consensus 337 ~~~~~p~Gg~~v~~d~~~~~-~~~~----~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~ 411 (460)
T PRK13238 337 VPIQTPAGGHAVFVDAGKFL-PHIP----AEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIP 411 (460)
T ss_pred CCeEccCCceEEEEEchhcC-CCCC----CCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecc
Confidence 44444556788888875421 0000 0111114455555 56699998854 123677544
Q ss_pred C---CHHHHHHHHHHHHHHHH
Q 015230 392 H---SSDDIQHTITAAEKVLR 409 (411)
Q Consensus 392 ~---t~~~i~~~i~~l~~~~~ 409 (411)
- |.++++.+.++|+++.+
T Consensus 412 rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 412 RRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 4 99999999999988754
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=180.60 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=208.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~ 130 (411)
.++++++++.+..... ......+..+++.+++++.++ . .+.++++++|+++++.++.. ...++++|++.+++|++
T Consensus 20 ~~~~V~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~--~~~~Gd~Vlv~~~~~~~ 96 (401)
T PLN02409 20 IPERVLRAMNRPNEDH-RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTN--TLSPGDKVVSFRIGQFS 96 (401)
T ss_pred CCHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHh--cCCCCCEEEEeCCCchh
Confidence 5677777765433221 011225667888888888887 3 35789999999999998864 34567889999988775
Q ss_pred Cchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 131 HADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 131 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
.... .....|..+..++.+..... |++++++.++..+ ++++++++.++.+++|.+.+ +++
T Consensus 97 ~~~~~~~~~~g~~v~~v~~~~~~~~--------------~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~----~~~ 158 (401)
T PLN02409 97 LLWIDQMQRLNFDVDVVESPWGQGA--------------DLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND----LAG 158 (401)
T ss_pred HHHHHHHHHcCCceEEEECCCCCCC--------------CHHHHHHHHhhCcCCCccEEEEEeecccccccCC----HHH
Confidence 4321 12233544444333221111 7899999998532 36788888888888999998 999
Q ss_pred HHHH--HHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCC--ccc---
Q 015230 209 IRRI--TKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--MYQ--- 280 (411)
Q Consensus 209 i~~l--~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~--~~~--- 280 (411)
|.++ |+++|+++|+|++|+ .|. ....+.++++.-+.+.+|+++++..+|+++.+++.++.+.+... .+.
T Consensus 159 i~~l~~~~~~g~~~vvD~v~s---~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~ 235 (401)
T PLN02409 159 VRKLLDCAQHPALLLVDGVSS---IGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWA 235 (401)
T ss_pred HHHHHhhhccCcEEEEEcccc---cCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHH
Confidence 9999 999999999999997 221 12223334433344778999865569999999998888754211 111
Q ss_pred -------cc---CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceE-Ee-eecceEEEEE
Q 015230 281 -------AG---TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GG-YISGMFGFFF 345 (411)
Q Consensus 281 -------~~---t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~g~~~~~~~ 345 (411)
.. .++++.....+..++++.+.+ +++.++.+++.+++++.|+++.. ..... .. ..+.+.++.+
T Consensus 236 ~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~--~~~~~~~~~~s~~v~~~~~ 313 (401)
T PLN02409 236 DYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGL--KLCTKKPEWRSDTVTAVVV 313 (401)
T ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC--eeccCChhhcccceEEEeC
Confidence 11 335666677777788887654 56667777777777777766521 11111 11 1223445544
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC----cceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~----~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
. ...+..++.+.|. +.||.+..+.. ..+|+ ...++.+++..++++|++++.++
T Consensus 314 p-------------~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 314 P-------------EGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred C-------------CCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2 2222356776664 56999998742 34777 35679999999999999998753
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=183.73 Aligned_cols=249 Identities=15% Similarity=0.055 Sum_probs=162.7
Q ss_pred CCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC
Q 015230 74 PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 150 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 150 (411)
..++++.+++++.+.++ .+++|++|+|+++++..+++.. ...+++.|++.+|+|+... ......|..+..++...
T Consensus 109 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l-~~~pGd~Vli~~P~Y~~y~-~~~~~~g~~~v~v~~~~ 186 (407)
T PLN02368 109 LPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAV-IRGEKDGVLVPVPQYPLYS-ATISLLGGTLVPYYLEE 186 (407)
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHH-cCCCCCEEEEeCCCCccHH-HHHHHcCCEEEEEeccc
Confidence 36788999999987754 5789999999999999988743 1135788999999998654 44444555444443322
Q ss_pred CCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEE-EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccc
Q 015230 151 SPGVPKGATYETLTAPFNDVSALENLFENN---KGEIA-AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~-~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~ 226 (411)
..++.. |++++++.++.. ..+++ +++++| +|++|.+.+ .+.+++|.++|++|+++||+||+|
T Consensus 187 ~~~~~~------------d~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG~v~s-~e~l~~l~~~a~~~~~~II~DE~Y 252 (407)
T PLN02368 187 SENWGL------------DVNNLRQSVAQARSKGITVRAMVIINP-GNPTGQCLS-EANLREILKFCYQERLVLLGDEVY 252 (407)
T ss_pred ccCCCC------------CHHHHHHHHHHHhhcCCCeEEEEEECC-CCCCCccCC-HHHHHHHHHHHHHcCCEEEEEccc
Confidence 111111 889999988631 11455 555566 455565544 555999999999999999999999
Q ss_pred ccc-cccc--C-ccccc---c-------CCCcchhhhhhhc-c-CCccccccc---ccHHHHHHhcCCCCcccccCCCCC
Q 015230 227 TGF-RLAY--G-GAQEY---F-------GVTPDLTTLGKII-G-GGLPVGAYG---GRRDIMEMVAPAGPMYQAGTLSGN 287 (411)
Q Consensus 227 ~g~-~~g~--~-~~~~~---~-------~~~~d~~~~sK~~-~-~G~~~g~~~---~~~~~~~~~~~~~~~~~~~t~~~~ 287 (411)
..+ ..+. . ..... . +...-+.||||.| + +|||+||++ +++++++.+.... ..+++.+
T Consensus 253 ~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~----~~~~~~~ 328 (407)
T PLN02368 253 QQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA----SIALSPN 328 (407)
T ss_pred cccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh----cccCCCC
Confidence 987 4332 1 11111 1 0112245899998 5 799999997 5888888876421 1245677
Q ss_pred HHHHHHHHHHHHHH-----------hc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEE
Q 015230 288 PLAMTAGIHTLKRL-----------KE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 345 (411)
Q Consensus 288 ~~~~a~~~~~l~~~-----------~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 345 (411)
.+++.++.++++.- ++ +++++.++++.+.+.+.|+++ .++.......|+++|.++
T Consensus 329 ~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~---~g~~~~~P~Gafy~~~~i 395 (407)
T PLN02368 329 VSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC---KNVVCNFTEGAMYSFPQI 395 (407)
T ss_pred cHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEeCCCCeeeEeccCC
Confidence 88888888887421 11 234556677777777777665 122223334466777655
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=177.23 Aligned_cols=316 Identities=16% Similarity=0.096 Sum_probs=197.1
Q ss_pred CCCcHHHHHHHHHHHHcCCC-CCC-------CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh-c-cCCc
Q 015230 51 GHADDQVLAALGETMKKGTS-FGA-------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-F-TGRE 119 (411)
Q Consensus 51 g~~~~~v~~a~~~~l~~~~~-~~~-------~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~-~-~~~~ 119 (411)
+..++.+++++.+.++.... ... .....+++.+.+++.++ ..++|++++|+++++..++..+.. . .+++
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~ 89 (381)
T PRK02948 10 TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKK 89 (381)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCC
Confidence 34788899999988875211 111 13446677788888887 678999999999999998875432 1 2345
Q ss_pred EEEEEeCCcCCCchhhhh--hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 120 RIIKFEGCYHGHADPFLV--KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
.|++....|++....... ..|..+..++.... +. .|++++++.++ +++++|+++.+++++|
T Consensus 90 ~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~-------------~d~~~l~~~l~---~~~~lv~~~~~~n~tG 152 (381)
T PRK02948 90 HIITTPMEHASIHSYFQSLESQGYTVTEIPVDKS-GL-------------IRLVDLERAIT---PDTVLASIQHANSEIG 152 (381)
T ss_pred EEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCC-CC-------------CCHHHHHHhcC---CCCEEEEEECCcCCcE
Confidence 555544444432222222 22333333222111 11 18899988876 3567888888888999
Q ss_pred ccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhcc-CCcccccccccHHH-HHHhcC
Q 015230 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI-MEMVAP 274 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~-~~~~~~ 274 (411)
.+.+ +++|.++|+++|+++++|++|+ + |. ......++.+.-+.+++|.++ .| +|+++.++++ +..+..
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~~-~--g~~~~~~~~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~ 223 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQT-F--GKLPIDVFEMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFP 223 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChhh-c--cccccCcccCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCccc
Confidence 9998 9999999999999999998885 2 21 111223333333458999887 24 7888776654 111110
Q ss_pred CC-CcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-e----cceEEEEEe
Q 015230 275 AG-PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-I----SGMFGFFFT 346 (411)
Q Consensus 275 ~~-~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~----g~~~~~~~~ 346 (411)
.. .......++.+.++.+++.++++.+.+ ++.+++++++.+++++.|+++ +......+ . ..++.+.+.
T Consensus 224 ~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~~i~~~~~~ 299 (381)
T PRK02948 224 GTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL----PLPIEVEGHSTSCLPHIIGVTIK 299 (381)
T ss_pred CCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEeCCCccCcCCEEEEEeC
Confidence 00 000112456778888888888876533 566677778888888877765 22111111 1 112223221
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------------------cceeee--cCCCHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFTS--LAHSSDDIQHTI 401 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----------------------~~~~~~--~~~t~~~i~~~i 401 (411)
. ....++...|.++||.++.+.. ..+|++ ..+|++|+++++
T Consensus 300 ~--------------~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~ 365 (381)
T PRK02948 300 G--------------IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTI 365 (381)
T ss_pred C--------------CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHH
Confidence 1 1125667778889999986531 347774 567999999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
+.|+++++.
T Consensus 366 ~~l~~~~~~ 374 (381)
T PRK02948 366 HALETIGNQ 374 (381)
T ss_pred HHHHHHHHH
Confidence 999998765
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-20 Score=172.36 Aligned_cols=312 Identities=15% Similarity=0.143 Sum_probs=199.4
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCC--CCC-------CHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHhc-c
Q 015230 49 IIGHADDQVLAALGETMKKGTSF--GAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAF-T 116 (411)
Q Consensus 49 ~~g~~~~~v~~a~~~~l~~~~~~--~~~-------~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~~-~ 116 (411)
..|..++.+.+++.+.++..... .+. .....++.+.+++.++ . .+++++|+|+++++..++..+... .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~ 86 (373)
T cd06453 7 ATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANK 86 (373)
T ss_pred cccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCC
Confidence 34557788999998888663221 111 2334567778888876 4 679999999999999999754221 1
Q ss_pred CCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 117 GRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
+++.|++.+++|.+...... ...|..+..++......+ |++++++.+.+ ++++|++..++
T Consensus 87 ~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~l~~---~~~~v~~~~~~ 149 (373)
T cd06453 87 PGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQL--------------DLEALEKLLTE---RTKLVAVTHVS 149 (373)
T ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCc--------------CHHHHHHHhcC---CceEEEEeCcc
Confidence 55778888877776433222 133444444333211111 88999998863 57788887777
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhh--hhccCCcccccccccHHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~~~~~~~ 271 (411)
+++|.+.+ +++|.++|++||++|++|++|+. |.. ..+.....+|++++| |++++ .++|++++++++++.
T Consensus 150 ~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~~---~~~-~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~ 220 (373)
T cd06453 150 NVLGTINP----VKEIGEIAHEAGVPVLVDGAQSA---GHM-PVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEE 220 (373)
T ss_pred cccCCcCC----HHHHHHHHHHcCCEEEEEhhhhc---Cce-eeeccccCCCEEEeccccccCC-CCcEEEEEchHHhhc
Confidence 78899888 99999999999999999999962 111 111112346776665 99986 558999999988887
Q ss_pred hcCCCCcc------------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 272 VAPAGPMY------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 272 ~~~~~~~~------------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
+.+..... .....+.+..+..+..++++.+.+ ++++++.+++.+++++.|+++ +.
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~----~~ 296 (373)
T cd06453 221 MPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEI----PG 296 (373)
T ss_pred CCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC----CC
Confidence 76421100 000113444455555566666654 344555666666666666554 32
Q ss_pred ceE---EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------------cceeee--cCCC
Q 015230 331 AIC---GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFTS--LAHS 393 (411)
Q Consensus 331 ~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------------~~~~~~--~~~t 393 (411)
... ....+.++.+.+.. .+..++.+.|.++||.+.++.. ..+|++ ..+|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t 362 (373)
T cd06453 297 VRVYGDAEDRAGVVSFNLEG--------------IHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNT 362 (373)
T ss_pred eEEeCCccccCCeEEEEECC--------------cCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCC
Confidence 111 12235666776532 1236788999999999976532 346774 5579
Q ss_pred HHHHHHHHHHH
Q 015230 394 SDDIQHTITAA 404 (411)
Q Consensus 394 ~~~i~~~i~~l 404 (411)
++|+|++++.|
T Consensus 363 ~~di~~~~~~l 373 (373)
T cd06453 363 EEEIDALVEAL 373 (373)
T ss_pred HHHHHHHHhhC
Confidence 99999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=175.77 Aligned_cols=313 Identities=17% Similarity=0.115 Sum_probs=191.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-C-------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-cCCcEEE
Q 015230 53 ADDQVLAALGETMKKGTSFGA-P-------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-TGRERII 122 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~-~-------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-~~~~~vi 122 (411)
.++.+++++.+.++....+.+ . .+..+++.+++++.++ .+++++||+|+++++..+++..... .+++.|+
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv 90 (379)
T TIGR03402 11 VDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHII 90 (379)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEE
Confidence 678899999988875322211 1 2235567788888887 6789999999999999999765332 3445666
Q ss_pred EEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccC
Q 015230 123 KFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 200 (411)
Q Consensus 123 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~ 200 (411)
+....|++........ .|..+..++... .+. -|++++++.++ ++++++++..+++++|.+.
T Consensus 91 ~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~g~-------------~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~ 153 (379)
T TIGR03402 91 TTAVEHPAVLSLCQHLEKQGYKVTYLPVDE-EGR-------------LDLEELRAAIT---DDTALVSVMWANNETGTIF 153 (379)
T ss_pred EcccccHHHHHHHHHHHHcCCEEEEEccCC-CCc-------------CCHHHHHHhcC---CCcEEEEEEcccCCeeecc
Confidence 6666666433222222 244444433221 111 17899998886 3567888888888899999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhh--hhccCCcccccccccHHHHHHhcCCCCc
Q 015230 201 PKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM 278 (411)
Q Consensus 201 ~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~~~~~~~~~~~~~~ 278 (411)
+ +++|.++|++||+++++|++|+ .|. ...+.....+|++++| |.++. ..+|+++.+++.. +.+....
T Consensus 154 ~----~~~I~~l~~~~g~~vivD~~~~---~g~-~~~~~~~~~~D~~~~s~~K~~gp-~G~g~l~v~~~~~--~~p~~~g 222 (379)
T TIGR03402 154 P----IEEIGEIAKERGALFHTDAVQA---VGK-IPIDLKEMNIDMLSLSGHKLHGP-KGVGALYIRKGTR--FRPLLRG 222 (379)
T ss_pred c----HHHHHHHHHHcCCEEEEECccc---ccc-cccCcccCCCCEEEEcHHHcCCC-CceEEEEECCCCC--CCCcccC
Confidence 8 9999999999999999999997 221 1222223456776655 94442 2277776665431 2211000
Q ss_pred ----ccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe----eecceEEEEEecC
Q 015230 279 ----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEG 348 (411)
Q Consensus 279 ----~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~~~ 348 (411)
......+.+..+..+..++++.+.+ ++..++.+++.+++++.|++. .+...... .....+.+.+...
T Consensus 223 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
T TIGR03402 223 GHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLAR---IPDARLNGDPTKRLPNTVNISFEYI 299 (379)
T ss_pred CccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---CCCEEEeCCCccCCCCEEEEEecCC
Confidence 0011234455666666667766544 344455666666666666541 23221111 1112333333211
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------------------cceee--ecCCCHHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----------------------~~~~~--~~~~t~~~i~~~i~~ 403 (411)
...++...|.++||.+.++.. ..+|+ ...+|++|||++++.
T Consensus 300 --------------~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~ 365 (379)
T TIGR03402 300 --------------EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEV 365 (379)
T ss_pred --------------CHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHH
Confidence 125778888889999987531 34676 467899999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 366 l~~~~~~ 372 (379)
T TIGR03402 366 LPPIIAR 372 (379)
T ss_pred HHHHHHH
Confidence 9988764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-20 Score=173.49 Aligned_cols=312 Identities=15% Similarity=0.135 Sum_probs=195.1
Q ss_pred CcHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc----cCCcEEEE
Q 015230 53 ADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----TGRERIIK 123 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~----~~~~~vi~ 123 (411)
.+|.+.+++...++.... +....+..+++.+++++.++ ..+++++++|+++++..++..+... .+++.|++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~ 111 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV 111 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 577777887777654211 12224555888899999997 5667888999999998888654332 23357777
Q ss_pred EeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCH
Q 015230 124 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 203 (411)
Q Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~ 203 (411)
.+++|++ +.......|..+..++...... .|++++++.++.. ..+++++.| ++++|.+.+
T Consensus 112 ~~~~h~~-~~~~~~~~G~~~~~v~~~~~~~--------------~d~~~l~~~l~~~--~~~vv~~~~-~~~tG~~~~-- 171 (373)
T TIGR03812 112 PESAHFS-FEKAAEMLGLELRYAPLDEDYT--------------VDVKDVEDLIDDN--TIGIVGIAG-TTELGQIDD-- 171 (373)
T ss_pred CCcchHH-HHHHHHHcCCeEEEEeeCCCCC--------------cCHHHHHHHHhhC--cEEEEEECC-CCCCCccCC--
Confidence 7766664 3333334454444433221111 1889999988742 345566665 566888888
Q ss_pred HHHHHHHHHHHHhCCEEEEecccccc-c-cccC----ccccccCCCcchh--hhhhhccCCcccccc-cccHHHHHHhcC
Q 015230 204 DFLNAIRRITKENGALLIFDEVMTGF-R-LAYG----GAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEMVAP 274 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~~~g~-~-~g~~----~~~~~~~~~~d~~--~~sK~~~~G~~~g~~-~~~~~~~~~~~~ 274 (411)
+++|.++|++||+++|+|++|+++ . .... ...+..-...|.+ +..|+..+++|.|++ +.++++++.+..
T Consensus 172 --~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~ 249 (373)
T TIGR03812 172 --IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSV 249 (373)
T ss_pred --HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcc
Confidence 999999999999999999999744 1 1100 0111100122433 345854466788866 467777776642
Q ss_pred CCCccccc-----CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 275 AGPMYQAG-----TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 275 ~~~~~~~~-----t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
..+..... ..+.+..+.+++.++++.+.. ++..++..++.+++++.|+++ +......+...++.+.+.
T Consensus 250 ~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~~ 325 (373)
T TIGR03812 250 DAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI----GFEPVIEPVLNIVAFEVD 325 (373)
T ss_pred cCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEcCCCceEEEEEeC
Confidence 22211111 013345667777777776644 456788888888888888775 322111223344444442
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceee--ecCCCHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
. ...+.+.|.++||++.... ...+|+ +..+|++|++++++.|++
T Consensus 326 -------------~---~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 326 -------------D---PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred -------------C---HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 1 1478899999999998763 345777 456899999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=171.18 Aligned_cols=318 Identities=16% Similarity=0.164 Sum_probs=200.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCC---CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
..+.+++++.+..... .....+..+++.+.+++.++. .+.+++++||++++..++..+ ..+++++++..++++
T Consensus 16 ~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l--~~~~~~vlv~~~~~~ 91 (368)
T PRK13479 16 TSRTVREAMLRDWGSW--DDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL--VPRDGKVLVPDNGAY 91 (368)
T ss_pred CCHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc--cCCCCeEEEEeCCch
Confidence 5666776665543211 111235677888888888873 356889999999999999753 345678888877776
Q ss_pred CCc-hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.. .......|..+..++....... |++++++.++..+ +++++++..+++++|...+ +++
T Consensus 92 ~~~~~~~~~~~g~~~~~i~~~~~~~~--------------d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~----~~~ 152 (368)
T PRK13479 92 GARIAQIAEYLGIAHVVLDTGEDEPP--------------DAAEVEAALAADP-RITHVALVHCETTTGILNP----LDE 152 (368)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCCC--------------CHHHHHHHHHhCC-CCcEEEEEcccCccccccC----HHH
Confidence 543 2223334554444433211111 8999999887542 4556666666677888888 999
Q ss_pred HHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcc--------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY-------- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~-------- 279 (411)
|.++|+++|+++|+|++|+ + |. ......++.+.-+.+++|++.|...+|++++++++++.+......+
T Consensus 153 i~~l~~~~~~~livDa~~~-~--g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T PRK13479 153 IAAVAKRHGKRLIVDAMSS-F--GAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQW 229 (368)
T ss_pred HHHHHHHcCCEEEEEcccc-c--CCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHH
Confidence 9999999999999998774 3 21 1222222332224588999865333799999999888776422111
Q ss_pred ------cccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eecceEEEEEe
Q 015230 280 ------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFFT 346 (411)
Q Consensus 280 ------~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~g~~~~~~~~ 346 (411)
....++.+..+.++..++++.+.+ ++..+++.++.+++++.|+++ ++..... ....+..+.+.
T Consensus 230 ~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~ 305 (368)
T PRK13479 230 AYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL----GFEPLLDAEIQSPIIVTFHAP 305 (368)
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc----CCcccCCchhcCceEEEEECC
Confidence 111245666666677777776533 345566777777777777665 3221111 11222333332
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---cceeee--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTS--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~~~~~~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.. ...+..++.+.|.++||.+.++.. +.+|++ ...++++++++++.|+++++++
T Consensus 306 ~~-----------~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 306 AD-----------PAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred CC-----------CCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 11 111236789999999999988642 357885 4569999999999999998763
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=173.12 Aligned_cols=325 Identities=16% Similarity=0.118 Sum_probs=207.1
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCC-------CHHHHHHHHHHHhhCC-C-CCEEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~-------~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a 104 (411)
..|+|..+. |..++.+++++.+.+...... ... .+..+++.+.+++.++ . +++|+||+|++++
T Consensus 33 ~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 33 LVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred eEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 356665332 346778999998887653211 111 1224577778888887 3 4799999999999
Q ss_pred HHHHHHHH-H-hccCCcEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 105 CMGVLRLA-R-AFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 105 ~~~al~~~-~-~~~~~~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
+..+++.. + ...+++.|++....|++....... ..|..+..++......+ |++++++.++
T Consensus 107 l~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~--------------~~~~l~~~i~- 171 (424)
T PLN02855 107 INLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVL--------------DVEQLKELLS- 171 (424)
T ss_pred HHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCc--------------CHHHHHHHhc-
Confidence 99988642 1 234567888888877765433322 23443333332211111 7899998886
Q ss_pred CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcch--hhhhhhccCCc
Q 015230 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGL 257 (411)
Q Consensus 180 ~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~ 257 (411)
.++++|++..+++.+|.+.+ +++|.++|+++|+++++|++|+ .|.. ..+.....+|+ .+++|.++. -
T Consensus 172 --~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~~gp-~ 240 (424)
T PLN02855 172 --EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS---VPHM-PVDVQTLGADFLVASSHKMCGP-T 240 (424)
T ss_pred --cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh---cCCc-CCCchhcCCCEEEeecccccCC-C
Confidence 36788888888888999999 9999999999999999999996 2211 11222223454 478995542 2
Q ss_pred ccccccccHHHHHHhcCCCCcc-------------c-----ccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHH
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMY-------------Q-----AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGE 316 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~-------------~-----~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~ 316 (411)
.+|++++++++++.+.+..... . ....+.+..+.++..++++.+.+ ++..++.++..++
T Consensus 241 G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~ 320 (424)
T PLN02855 241 GIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTY 320 (424)
T ss_pred ccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3899999988887765321000 0 01113455556666667776554 4555666677777
Q ss_pred HHHHHHHHHHhcCCceEE-------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCC-----
Q 015230 317 LTQGIIDAGKKAGHAICG-------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----- 383 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----- 383 (411)
+++.|+++ +..... ...+.++.|.+... ...++.+.|.++ ||.++.+..
T Consensus 321 l~~~L~~~----~g~~i~~~~~~~~~~r~~~v~~~~~~~--------------~~~~v~~~L~~~~gI~v~~g~~c~~~~ 382 (424)
T PLN02855 321 LYEKLSSV----PGVRIYGPKPSEGVGRAALCAFNVEGI--------------HPTDLSTFLDQQHGVAIRSGHHCAQPL 382 (424)
T ss_pred HHHHHhcC----CCEEEeCCCcccccCcccEEEEEECCc--------------CHHHHHHHhcccCCEEEechhhhhHHH
Confidence 77766554 211111 12345666665321 125788888888 999987542
Q ss_pred -------cceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 384 -------EAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 -------~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+|+ .+..|++|++++++.|+++++.
T Consensus 383 ~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 383 HRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred HHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 24676 4678999999999999998764
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=164.40 Aligned_cols=306 Identities=14% Similarity=0.113 Sum_probs=192.4
Q ss_pred CCCCHHHHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCccc
Q 015230 72 GAPCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 146 (411)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~ 146 (411)
-+...+++++++.+.+.-+ +++++++++|++.|+++.+.. ...+++..++..|-|.|.--...--+|.++..+
T Consensus 121 ~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fc--LadpgdafLvPtPyY~gfdrdl~~rTgveivpv 198 (471)
T KOG0256|consen 121 HGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFC--LADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPV 198 (471)
T ss_pred cCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHH--hcCCCceeeecCCCCCcccccceeccCceEEEE
Confidence 3458889999999988764 588999999999999987652 223556677777777664222211222222222
Q ss_pred CCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEE-EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 147 GLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAA-IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~-vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
.+.-..++.. +.+.+|.++.+ ...+++. +++||.|+-|.++. +|.+..+.+.|.++++.||+
T Consensus 199 ~c~Ss~~f~i------------tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~--~e~L~~ll~Fa~~kniHvI~ 264 (471)
T KOG0256|consen 199 HCSSSNGFQI------------TVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLS--PEELISLLNFASRKNIHVIS 264 (471)
T ss_pred EeecCCCccc------------cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccC--HHHHHHHHHHHhhcceEEEe
Confidence 2221222111 68888877775 2235555 55556555444433 34499999999999999999
Q ss_pred ecccccc-ccc-c-Ccccccc---CCCcc----hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHH
Q 015230 223 DEVMTGF-RLA-Y-GGAQEYF---GVTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLA 290 (411)
Q Consensus 223 De~~~g~-~~g-~-~~~~~~~---~~~~d----~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~ 290 (411)
||+|++- ... . ....+.. ...+| +.++||-|| .|+|+|.++. ++++....+++.... ..++..
T Consensus 265 DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~-----~vSs~t 339 (471)
T KOG0256|consen 265 DEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG-----LVSSQT 339 (471)
T ss_pred ehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc-----CCcHHH
Confidence 9999854 221 1 1111111 11344 348999999 8999999955 677777666432221 223344
Q ss_pred HHHHHHHHH--HHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHH
Q 015230 291 MTAGIHTLK--RLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 365 (411)
Q Consensus 291 ~a~~~~~l~--~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (411)
+......|. .+.+ ++...+++.+.+++.+.|+++ ++.....+.|+++|+++...-.+. ..+.-.
T Consensus 340 Q~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l----gI~cl~s~AGlF~wvDlr~lL~s~-------tfe~El 408 (471)
T KOG0256|consen 340 QYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL----GIPCLKSNAGLFCWVDLRKLLTSL-------TFEGEL 408 (471)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc----CCceeecCCeeEEEEEhHHhcCcC-------ChHHHH
Confidence 444333332 1111 455667777777788888777 788888899999999986532111 112224
Q ss_pred HHHHHHHHc-CeEeccCCC------cceeeecCC-CHHHHHHHHHHHHHHHH
Q 015230 366 RFYRGMLEE-GVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVLR 409 (411)
Q Consensus 366 ~~~~~l~~~-Gi~v~~~~~------~~~~~~~~~-t~~~i~~~i~~l~~~~~ 409 (411)
.+.+.+.++ ++.++||.. +++|+.++. .++.++-++++|...+.
T Consensus 409 ~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 409 ELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred HHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 566677777 999999953 348887655 55555559999988764
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=172.87 Aligned_cols=321 Identities=16% Similarity=0.079 Sum_probs=194.4
Q ss_pred cCCCcHHHHHHHHHHHHcCC-----CC-C---CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 50 IGHADDQVLAALGETMKKGT-----SF-G---APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~-----~~-~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.|..++.+.+++.+.++... .. . ......+++ +.+ +.++ .+++|+|++|+|+++..++.......+++
T Consensus 36 ~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~ 113 (406)
T TIGR01814 36 LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKR 113 (406)
T ss_pred cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCc
Confidence 33457888888887776521 11 0 112222333 334 6666 67899999999999999887532111123
Q ss_pred -EEEEEeCCcCCCchhhh---hhcCCCCcc--cCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 120 -RIIKFEGCYHGHADPFL---VKAGSGVAT--LGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 120 -~vi~~~~~~~~~~~~~~---~~~g~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
.|++....|+....... ...|..+.. ...+.. .+.. |++++++.+++..+++++|+++++
T Consensus 114 ~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~-------------~~~~l~~~~~~~~~~t~lv~~~~v 180 (406)
T TIGR01814 114 YKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETL-------------RLEDILDTIEKNGDDIAVILLSGV 180 (406)
T ss_pred cEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCcc-------------CHHHHHHHHHhcCCCeEEEEEecc
Confidence 45555566665444322 122332210 011111 1111 778888888755567899999999
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~ 271 (411)
++++|.+.| +++|.++|++||+++++|++|+ .|. .+..+.++++..+.+..|++.+| |-|+++..++....
T Consensus 181 ~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~---~G~~~id~~~~gvD~~~~s~hK~l~g~-pG~~l~v~~~~~~~ 252 (406)
T TIGR01814 181 QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA---VGNVPLDLHDWGVDFACWCTYKYLNAG-PGAGAFVHEKHAHT 252 (406)
T ss_pred ccccceecC----HHHHHHHHHHcCCEEEEEcccc---cCCcccccccCCCCEEEEcCccccCCC-CCeEEEEehhhhhh
Confidence 999999999 9999999999999999999997 332 22233345555456788999765 32444444443333
Q ss_pred hcCCCCccccc--------------------CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 272 VAPAGPMYQAG--------------------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 272 ~~~~~~~~~~~--------------------t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+.+....+.+. ..+.+..++++..++++.+.+ ++..++.+++.+++++.|+++....
T Consensus 253 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~ 332 (406)
T TIGR01814 253 ERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGP 332 (406)
T ss_pred cCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 33211111000 123566777777788887755 4556667777777777766541000
Q ss_pred C-Cce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee---cCCCHHHHHHH
Q 015230 329 G-HAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS---LAHSSDDIQHT 400 (411)
Q Consensus 329 ~-~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~---~~~t~~~i~~~ 400 (411)
+ +.. .....+.++.|.+. . ....+.+.|.++||.+.......+|++ +.+|++|++++
T Consensus 333 ~~~~i~~~~~~~~r~~~v~~~~~-~--------------~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~did~l 397 (406)
T TIGR01814 333 PVLTIITPRDHAQRGCQLSLTHP-V--------------PGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVDVYDA 397 (406)
T ss_pred CceEEeCCCChhhcCCeEEEEec-C--------------CHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHHHHHH
Confidence 1 111 11123455666552 1 126788899999999876544567774 46699999999
Q ss_pred HHHHHHHH
Q 015230 401 ITAAEKVL 408 (411)
Q Consensus 401 i~~l~~~~ 408 (411)
+++|++++
T Consensus 398 ~~~l~~~~ 405 (406)
T TIGR01814 398 VNVLEEIL 405 (406)
T ss_pred HHHHHHHh
Confidence 99999875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=168.08 Aligned_cols=327 Identities=12% Similarity=0.054 Sum_probs=194.7
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCC---C-C----CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 49 IIGHADDQVLAALGETMKKGTSF---G-A----PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 49 ~~g~~~~~v~~a~~~~l~~~~~~---~-~----~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
+-++..|++++++.+.-...... . . ......++.+.+++.++- +++++++|+++++..++... ..+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~-~~i~~~~g~t~al~~~l~~~--~~~gd~ 85 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM-DEARVTPGAREGKFAVMHSL--CEKGDW 85 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC-ceEEEeCCHHHHHHHHHHHh--cCCCCE
Confidence 34557888888888876431110 0 1 134467888888888754 89999999999999988743 345677
Q ss_pred EEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC----CcEEEEEEcccCCCC
Q 015230 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPVVGNS 196 (411)
Q Consensus 121 vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~----~~~~~vi~~~~~~~~ 196 (411)
|++..++|++.. ......|..+..++......+. -|++++++.++... .++++++++.+++++
T Consensus 86 Vl~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~t 152 (361)
T cd06452 86 VVVDGLAHYTSY-VAAERAGLNVREVPNTGHPEYH------------ITPEGYAEVIEEVKDEFGKPPALALLTHVDGNY 152 (361)
T ss_pred EEEcCCcchHHH-HHHHhcCCEEEEEecCCCCCcc------------cCHHHHHHHHHHHhhccCCCceEEEEECCCCCC
Confidence 777767766543 2334445444443332111111 18899998886421 256777777777778
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCC
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 275 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~ 275 (411)
|...+ +++|.++|+++|+++|+|++|+ .|. .+....++.+..+.|++|+++++.|+|++++++++++.+...
T Consensus 153 G~~~~----~~~i~~~~~~~~~~vivD~a~~---~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~ 225 (361)
T cd06452 153 GNLHD----AKKIAKVCHEYGVPLLLNGAYT---VGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRT 225 (361)
T ss_pred eeecc----HHHHHHHHHHcCCeEEEECCcc---cCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhcc
Confidence 88877 9999999999999999999996 121 122223344444668999998767999999999998887643
Q ss_pred CCcc-------cccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceE--EeeecceEEEEE
Q 015230 276 GPMY-------QAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFF 345 (411)
Q Consensus 276 ~~~~-------~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~~~~ 345 (411)
...+ .+.+ .....+..+.++++.+.+ -+...+..++.+++++.|+++. ++... ......++.++.
T Consensus 226 ~~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~---g~~v~~~~~~~~n~~~~~~ 300 (361)
T cd06452 226 SQMFKIKEVELLGCT--LRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIE---GIKQLGEKPKNHDLMFFET 300 (361)
T ss_pred ccccccceeeeeccc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEECCCCCCCceEEEEc
Confidence 3211 1111 112233334444443321 1112222334456666666541 11111 012334544444
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-cceeee-cCCCHHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTS-LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~~~-~~~t~~~i~~~i~~l~~~~ 408 (411)
.... ...........++.+.|+++||.+...+. ..+|+. ...|+++++.++++|+++.
T Consensus 301 ~~~~-----~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 301 PSFD-----EIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CCcc-----hhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 2100 00000011124689999999999754332 335664 3579999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-19 Score=164.72 Aligned_cols=320 Identities=13% Similarity=0.108 Sum_probs=192.8
Q ss_pred CEEEeccCCccccccCC--CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
+.+|+..+.. ..+|- .++++++++.+++++ +....+..+++.+++++.+ +.+++++++|+++|+..+++.+
T Consensus 8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~a~~~-g~~~~~~~~g~t~al~~al~al- 80 (363)
T TIGR01437 8 KKVINASGKM--TILGVSTVSDEVADAQKRGAQN---YFEIKELVNKTGEYIANLL-GVEDAVIVSSASAGIAQSVAAV- 80 (363)
T ss_pred ceEEECCcEe--ecCCCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhh-CCCeEEEEcCHHHHHHHHHHHH-
Confidence 4566655554 55665 689999999999876 3346677888999998888 4568899999999999999864
Q ss_pred hccCCc---------------EEEEEeCCcCCC---chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH
Q 015230 114 AFTGRE---------------RIIKFEGCYHGH---ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 175 (411)
Q Consensus 114 ~~~~~~---------------~vi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 175 (411)
..+++ .||+..+.|... ........|..+...... .. -|++++++
T Consensus 81 -~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~--~~--------------~d~~~le~ 143 (363)
T TIGR01437 81 -ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA--NE--------------CSAEQLEA 143 (363)
T ss_pred -hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC--CC--------------CCHHHHHH
Confidence 22333 677766444322 123334444433332211 01 18999999
Q ss_pred HHHcCCCcEEEEE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhh
Q 015230 176 LFENNKGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKI 252 (411)
Q Consensus 176 ~~~~~~~~~~~vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~ 252 (411)
+++. ++++++ ++..++.+|...+ +++|.++|++||+++|+|++|+ . . ......++ .|++ |++|+
T Consensus 144 ai~~---~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~-~~~~~~~g--~D~~~~S~~K~ 210 (363)
T TIGR01437 144 AITE---KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--D-LQKYYRLG--ADLVIYSGAKA 210 (363)
T ss_pred hcCh---hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--c-hHHHHHcC--CCEEEEeCCcc
Confidence 9973 445444 5554455677777 9999999999999999999996 1 0 00001123 3544 66798
Q ss_pred ccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 253 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 253 ~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
++ |++.|++++++++++.+...... ....+.......++..++++.+.+ .+..+...++..+++++|+++ +.
T Consensus 211 l~-gp~~G~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i----~g 284 (363)
T TIGR01437 211 IE-GPTSGLVLGKKKYIEWVKLQSKG-IGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTL----KG 284 (363)
T ss_pred cC-CCceEEEEEcHHHHHHHHhccCC-CcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcC----CC
Confidence 86 45689988888887766421110 011111111223344445554443 445555556666777777765 32
Q ss_pred ceEE---eeecc---eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC--eEecc--CCCcceee-ecCCCHHHHHH
Q 015230 331 AICG---GYISG---MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAP--SQFEAGFT-SLAHSSDDIQH 399 (411)
Q Consensus 331 ~~~~---~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--i~v~~--~~~~~~~~-~~~~t~~~i~~ 399 (411)
.... ...+. ...+.+... ..+....++.+.|.++| |.+++ .....+++ +.+.+++|++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~v~~~~~----------~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~~~~~e~~~ 354 (363)
T TIGR01437 285 VSASIVQDEAGRDIARAEIRFDES----------ELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRSVTGGQLDI 354 (363)
T ss_pred eEEEEecCCCCCcCceEEEEEecc----------CCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeecCCHHHHHH
Confidence 2111 11111 011212110 01123478999998876 77764 23334666 45678999999
Q ss_pred HHHHHHHHH
Q 015230 400 TITAAEKVL 408 (411)
Q Consensus 400 ~i~~l~~~~ 408 (411)
++++|.+++
T Consensus 355 ~~~~l~~~~ 363 (363)
T TIGR01437 355 IVERIREIV 363 (363)
T ss_pred HHHHHHHhC
Confidence 999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=171.45 Aligned_cols=325 Identities=15% Similarity=0.138 Sum_probs=189.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCC------CCC---CHHHHHHHHHHHhhCC-CCCEEEEeCChHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSF------GAP---CLLENVLAEMVISAVP-SIEMVRFVNSGTE 103 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~------~~~---~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~ 103 (411)
+..+++..+- ++ .+|++++++.+.+.. . .+. .+. ..+++...+.+++.++ ....+++ +||++
T Consensus 19 ~~~~~~~~~~--~~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~-~sgt~ 92 (402)
T cd00378 19 RETLELIASE--NF---TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQP-HSGSQ 92 (402)
T ss_pred HhCeeeeccC--Cc---CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeec-CCcHH
Confidence 3456665442 33 489999999877632 1 111 111 2223334556667776 3334444 46899
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhh----hhhcCCCCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPF----LVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
|+..++... ..+++.|++.+++|.+..... ....|..+..++.+.. .+.. |++++++.+
T Consensus 93 a~~~~l~~l--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i-------------d~~~l~~~i 157 (402)
T cd00378 93 ANLAVYFAL--LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLI-------------DYDALEKMA 157 (402)
T ss_pred HHHHHHHHh--cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCc-------------CHHHHHHHH
Confidence 999988754 346678999888887653321 2222322222222111 1111 899999988
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccc-ccc-cccc-CccccccCCCcchhhhhhhcc
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAY-GGAQEYFGVTPDLTTLGKIIG 254 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~-~g~-~~g~-~~~~~~~~~~~d~~~~sK~~~ 254 (411)
... +++++++.+.+ .|...+ +++|.++|++||+++|+|++| .|+ ..|. ..... +.+.-+.++||++
T Consensus 158 ~~~--~~~~v~~~~~~--~~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l- 226 (402)
T cd00378 158 LEF--KPKLIVAGASA--YPRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTL- 226 (402)
T ss_pred HhC--CCCEEEecCcc--cCCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCC-
Confidence 642 45555554322 244445 999999999999999999997 455 3332 11111 2222245899999
Q ss_pred CCcccccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 255 GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 255 ~G~~~g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
+|+|.|++++++ ++++.+.........+ +......+++..++..... ++.+++++++.+++++.|++. ++
T Consensus 227 ~G~~gg~i~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~ 300 (402)
T cd00378 227 RGPRGGLILTRKGELAKKINSAVFPGLQG--GPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER----GF 300 (402)
T ss_pred CCCCceEEEeccHHHHHHHHHHhCccccC--CchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 567899998766 7877775321111111 1122233332333332221 456677888888888888765 33
Q ss_pred ceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----------CCcceeeec------CCC
Q 015230 331 AICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----------QFEAGFTSL------AHS 393 (411)
Q Consensus 331 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----------~~~~~~~~~------~~t 393 (411)
.... ...+.++|+.+.+... ...++.+.|.++||.+.+. ..+.+|+.. .++
T Consensus 301 ~~~~~~~~~~~v~v~~~~~~~------------~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~ 368 (402)
T cd00378 301 KVVSGGTDNHLVLVDLRPKGI------------TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMG 368 (402)
T ss_pred eEeecCCCCeEEEEeCCccCC------------CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCC
Confidence 2211 2347788888753211 1246677788899999743 123467732 347
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015230 394 SDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~~ 410 (411)
+++++.+++.|++++++
T Consensus 369 ~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 369 EEEMEEIADFIARALKD 385 (402)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=162.31 Aligned_cols=320 Identities=18% Similarity=0.152 Sum_probs=219.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~ 130 (411)
.+|++++++.+..-.. ...-......++.+.+...++ +.+.++++.||+.++++++.. ...++++|++..++.+|
T Consensus 16 v~~~V~~am~~~~~~h-~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~s--l~~pgdkVLv~~nG~FG 92 (383)
T COG0075 16 VPPRVLLAMARPMVGH-RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVAS--LVEPGDKVLVVVNGKFG 92 (383)
T ss_pred CCHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHh--ccCCCCeEEEEeCChHH
Confidence 5777877776543321 001124556777777888887 347788889999999999974 34467888888888777
Q ss_pred Cchhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHH
Q 015230 131 HADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209 (411)
Q Consensus 131 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i 209 (411)
....-. ...|.++..+..++...+ |++++++.++++ +.+++|.+.++-.++|++.| +++|
T Consensus 93 ~R~~~ia~~~g~~v~~~~~~wg~~v--------------~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvlnp----l~~I 153 (383)
T COG0075 93 ERFAEIAERYGAEVVVLEVEWGEAV--------------DPEEVEEALDKD-PDIKAVAVVHNETSTGVLNP----LKEI 153 (383)
T ss_pred HHHHHHHHHhCCceEEEeCCCCCCC--------------CHHHHHHHHhcC-CCccEEEEEeccCcccccCc----HHHH
Confidence 654444 344666666555544443 899999999965 36777888888888999999 9999
Q ss_pred HHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc-----------
Q 015230 210 RRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM----------- 278 (411)
Q Consensus 210 ~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~----------- 278 (411)
.++|++||.++|+|.+-+ -.|..+..+.|+++.-+....|++++---+|.+..+++.++.+......
T Consensus 154 ~~~~k~~g~l~iVDaVsS--~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~ 231 (383)
T COG0075 154 AKAAKEHGALLIVDAVSS--LGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLK 231 (383)
T ss_pred HHHHHHcCCEEEEEeccc--CCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHH
Confidence 999999999999998886 1235667888888777778899998511177888898888887643211
Q ss_pred -c---cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec-ceEEEEEecCCC
Q 015230 279 -Y---QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS-GMFGFFFTEGPV 350 (411)
Q Consensus 279 -~---~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 350 (411)
+ ....++++.....+..++++.+.+ ++..++.+++.+.+++.++++..+.-. +..... .+..+
T Consensus 232 ~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~--~~~~~s~tvta~------- 302 (383)
T COG0075 232 YMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA--DPERRSPTVTAI------- 302 (383)
T ss_pred HHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc--CcccCCCceEEE-------
Confidence 1 123456677777777888887766 566677888888888888877321111 111111 12222
Q ss_pred CCcchhcccchHHHHHHHHHHHHc-CeEeccCCCc----ceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFE----AGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~----~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.|.+.+..++...++++ |+.+.++..+ .+|| .-..+..++...+.+|..++.++
T Consensus 303 ------~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 303 ------KVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL 364 (383)
T ss_pred ------ECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence 223333334444455544 9999887433 4788 34678999999999999998764
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-19 Score=167.31 Aligned_cols=311 Identities=15% Similarity=0.128 Sum_probs=184.5
Q ss_pred CcHHHHHHHHHHHHcCCCC-----CCCCHHHHHHHHHHH---hhCC--CCCEEEEeCChHHHHHHHHHHHHh--c-cC-C
Q 015230 53 ADDQVLAALGETMKKGTSF-----GAPCLLENVLAEMVI---SAVP--SIEMVRFVNSGTEACMGVLRLARA--F-TG-R 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~-----~~~~~~~~~l~~~l~---~~~~--~~~~v~~~~~g~~a~~~al~~~~~--~-~~-~ 118 (411)
.++.+++++.+.+...... .+.......+.+.+. +..+ .+++|++|+|+++++..+++.+.. + .+ +
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~ 90 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGK 90 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCC
Confidence 6788999999988763211 111122223333332 2333 468999999999999998875421 1 23 4
Q ss_pred cEEEEEeCCcCCCchhhhh--hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCC
Q 015230 119 ERIIKFEGCYHGHADPFLV--KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~ 196 (411)
+.|++....|++....... ..|..+..++......+ |++++++.++. +++++++..+++++
T Consensus 91 ~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~--------------d~~~l~~~i~~---~t~lv~~~~~~n~t 153 (382)
T TIGR03403 91 NHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTI--------------TAEQVREAITE---KTALVSVMWANNET 153 (382)
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCC--------------CHHHHHHhccc---CCeEEEEEcccCCC
Confidence 5677776555543333222 23444444333211111 78889888863 46778888788889
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC-CcccccccccHHHHHHhc
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~~~~~~~~~ 273 (411)
|.+.+ +++|.++|++||+++++|++|+ .|. ...+.....+|++ ++.|.++. | +|+++.++.. .+.
T Consensus 154 G~~~~----~~~I~~la~~~g~~~ivD~a~~---~g~-~~~~~~~~~~D~~~~s~~K~~gp~G--~g~l~vr~~~--~~~ 221 (382)
T TIGR03403 154 GMIFP----IKEIGEICKERGVLFHTDAVQA---IGK-IPVDVQKAGVDFLSFSAHKFHGPKG--VGGLYIRKGV--ELT 221 (382)
T ss_pred ccccC----HHHHHHHHHHcCCEEEEechhh---cCC-CccCccccCCCEEEEcchhhCCCCc--eEEEEECCCC--CCC
Confidence 99998 9999999999999999999996 221 1112222345665 45597652 3 5666555432 111
Q ss_pred CCC---C-cccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee----ecceEEE
Q 015230 274 PAG---P-MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY----ISGMFGF 343 (411)
Q Consensus 274 ~~~---~-~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~ 343 (411)
+.. . .......+.+..+..++.++++...+ +...+++++..+++.+.|+++ +......+ ...++.+
T Consensus 222 p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 297 (382)
T TIGR03403 222 PLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL----PDVFVVGDREHRVPNTILI 297 (382)
T ss_pred CcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----CCEEEECCCCCCcCCEEEE
Confidence 100 0 00011345677777677777765543 333455555555665555543 32222211 1335555
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------------------cceee--ecCCCHHHHH
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFT--SLAHSSDDIQ 398 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----------------------~~~~~--~~~~t~~~i~ 398 (411)
.+.. .....+.+.|.++||.++.+.. ..+|+ ...+|++|+|
T Consensus 298 ~~~~--------------~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did 363 (382)
T TIGR03403 298 SIKG--------------VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEID 363 (382)
T ss_pred EeCC--------------CCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHH
Confidence 5422 1125677778899999986421 23666 4678999999
Q ss_pred HHHHHHHHHHHh
Q 015230 399 HTITAAEKVLRQ 410 (411)
Q Consensus 399 ~~i~~l~~~~~~ 410 (411)
++++.|++++++
T Consensus 364 ~~~~~l~~~~~~ 375 (382)
T TIGR03403 364 YTIEVFKKAVQR 375 (382)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=157.78 Aligned_cols=329 Identities=20% Similarity=0.200 Sum_probs=197.1
Q ss_pred EeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCC
Q 015230 39 IDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 39 ~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~ 118 (411)
+||.|- ++--.+|++++++.++-..+....+.++...++.+++++.++. ..++|++|||+|+..+|.. ..++
T Consensus 2 ~~f~SD----n~~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~-~a~~Fv~sGT~aN~lal~~---~~~~ 73 (342)
T COG2008 2 IDFRSD----NVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGK-EAALFVPSGTQANQLALAA---HCQP 73 (342)
T ss_pred CccccC----ccCCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCC-ceEEEecCccHHHHHHHHH---hcCC
Confidence 466665 3333799999999888654333345677888999999999955 9999999999999999984 3344
Q ss_pred cEEEEEeCCcCCCchhhhh-hcCCCCcccCC-CCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccC
Q 015230 119 ERIIKFEGCYHGHADPFLV-KAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVV 193 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~-~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~ 193 (411)
...+.....-|-..+..-. ..-.+..+++. +...+.. ++++++..++. +...+..++++...
T Consensus 74 ~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gkl-------------t~e~v~~~i~~~d~~~~~~~~~~~e~~~ 140 (342)
T COG2008 74 GESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKL-------------TPEDVEAAIRPDDIHHAPTPLAVLENTA 140 (342)
T ss_pred CCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCc-------------CHHHHHHhhcCCCcccCCCceEEEeecc
Confidence 4444444444533332211 11111122211 2233322 79999998874 12233444444444
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc--cc-ccccCccccccCCCcchhhhhhhccCCcccccc-cccHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT--GF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAY-GGRRDIM 269 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~--g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~-~~~~~~~ 269 (411)
+++|.+.+ .+++++|.++|++||++|++|.+.- .+ ..| .....+....|.++++-+-++|+|+|.+ +++.+++
T Consensus 141 te~GtVy~-l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~ 217 (342)
T COG2008 141 TEGGTVYP-LDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFA 217 (342)
T ss_pred CCCceecC-HHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHH
Confidence 47777655 5559999999999999999998873 22 223 1222333445666544334445588887 7799888
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
+.++.... ..+.-+....+..+++..+++.-.......+..++.+++.+.|++. .+.........+++++.+.+.
T Consensus 218 ~~a~~~rK-~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~---~G~~~~~~~~tN~vf~~l~~~- 292 (342)
T COG2008 218 KRARRWRK-RAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAK---PGVKLAFPVETNMVFVRLPES- 292 (342)
T ss_pred HHHHHHHH-HhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhc---CCceeccCCcccEEEEECChH-
Confidence 87753211 1222333344555555555432111111222333366666666543 233333335677888877431
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~ 408 (411)
..........+...|+++.+.+ ..+|+ ++.+|++++++++..+++++
T Consensus 293 -----------~i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 293 -----------AIEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred -----------HHHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 1233455666677788887765 33444 79999999999999998764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-19 Score=163.25 Aligned_cols=280 Identities=15% Similarity=0.065 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhc-----------cCCcEEEEEeCCcCCCchhhhhhc
Q 015230 74 PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-----------TGRERIIKFEGCYHGHADPFLVKA 139 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~-----------~~~~~vi~~~~~~~~~~~~~~~~~ 139 (411)
..++++++++++++.++ + .+.++||+||++|+..+++.++.. .+++.+|+.+...|.....+....
T Consensus 36 ~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~ 115 (345)
T cd06450 36 ATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL 115 (345)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHH
Confidence 36778899999999886 2 357999999999999999876432 122446666666665555555555
Q ss_pred CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh
Q 015230 140 GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216 (411)
Q Consensus 140 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~ 216 (411)
|..+..++....... |++++++.+++ ...+++++++...++++|.+.+ +++|.++|++|
T Consensus 116 g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~ 177 (345)
T cd06450 116 DVKVRLVPVDEDGRM--------------DPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKY 177 (345)
T ss_pred hcCeEEeeeCCCCCc--------------CHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHh
Confidence 555555443221111 89999999874 1124566666666666888877 99999999999
Q ss_pred CCEEEEecccccc-ccccCccccccCC-Ccch--hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHH
Q 015230 217 GALLIFDEVMTGF-RLAYGGAQEYFGV-TPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 292 (411)
Q Consensus 217 ~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~--~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a 292 (411)
|+++++|++|+++ ...........+. ..|. .+++|+++++.++|++..+ .+++.
T Consensus 178 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------~~~~~ 235 (345)
T cd06450 178 DLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------ALKLW 235 (345)
T ss_pred CCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH----------------------HHHHH
Confidence 9999999999744 2111100000111 2353 4789988877778888655 23333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 293 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 293 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
++...+....-++.+++..++.+++.+.|+++ +..... ...+.++.|.+.... .......++.+.|
T Consensus 236 ~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~iv~f~~~~~~---------~~~~~~~~i~~~L 302 (345)
T cd06450 236 ATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD----PGFELLGEPNLSLVCFRLKPSV---------KLDELNYDLSDRL 302 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEEEEECCcc---------hhhHHHHHHHHHH
Confidence 33333322111556677777777777777665 322111 123456666553210 0023446789999
Q ss_pred HHcCeEeccCC----Ccceeeec--C-CCHHHHHHHHHHHHH
Q 015230 372 LEEGVYFAPSQ----FEAGFTSL--A-HSSDDIQHTITAAEK 406 (411)
Q Consensus 372 ~~~Gi~v~~~~----~~~~~~~~--~-~t~~~i~~~i~~l~~ 406 (411)
.++|+++.+.. ...+|++. . +|+++++++++.|++
T Consensus 303 ~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 303 NERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 99965544332 23467743 3 499999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=161.58 Aligned_cols=326 Identities=19% Similarity=0.232 Sum_probs=218.4
Q ss_pred cCCCE--EEeccCCccccccCC--CcHHHHHHHHHHHHcCCCC-------CCCCHHHHHHHHHHHhhCCCCCEEEEeCCh
Q 015230 33 IDGNE--YIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTSF-------GAPCLLENVLAEMVISAVPSIEMVRFVNSG 101 (411)
Q Consensus 33 ~~g~~--~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g 101 (411)
..|.+ .+++.|= |++|+ ++-...++..+.++..... .+..+.+.++.+..++..+..+.++|.- |
T Consensus 131 ~tG~~~~~lNlgSY---NYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~m-G 206 (519)
T KOG1357|consen 131 YTGTRSRCLNLGSY---NYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSM-G 206 (519)
T ss_pred eccceeeeeeeccc---ccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEec-c
Confidence 44543 4676665 89998 5566777777777773211 2446777888888888887666676665 3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc--
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN-- 179 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-- 179 (411)
-..+...+. .+-+++..|..+.-.|+.....+ +..++.+..++|||+++||+.++.
T Consensus 207 f~TNs~~~p---~l~~~gsLIiSDelNHaSi~~Ga-------------------RLSgAtiRVfkHNdm~~LEr~Lrd~I 264 (519)
T KOG1357|consen 207 FATNSMNIP---SLLGKGSLIISDELNHASLITGA-------------------RLSGATTRVFRHNDMQGLERLLRDAI 264 (519)
T ss_pred ccccccCcc---eeecCCcceeeccccchheeccc-------------------cccCceEEEEecCCHHHHHHHHHHHH
Confidence 444444333 33456666777777776543222 234557888999999999999985
Q ss_pred -------C-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCc---c-
Q 015230 180 -------N-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTP---D- 245 (411)
Q Consensus 180 -------~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~---d- 245 (411)
+ +.++..|+++...++.|.+.. +.++.++++||.++|+.||+|+ |- ..+.....+.++.+| |
T Consensus 265 ~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDI 340 (519)
T KOG1357|consen 265 VYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDI 340 (519)
T ss_pred hcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhhee
Confidence 2 456778999999999999999 9999999999999999999997 44 233445566677654 3
Q ss_pred -hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHH
Q 015230 246 -LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-------PGTYEYLNKITGEL 317 (411)
Q Consensus 246 -~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-------~~~~~~~~~~~~~~ 317 (411)
+++|.|++++ --|++.+++++++.++.....-...+.. +|+.+.....+++.+.- ++..+++.++..++
T Consensus 341 mMGtftKSfga--~GGyiagsk~lid~lrt~s~~~~yat~~-sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yf 417 (519)
T KOG1357|consen 341 MMGTFTKSFGA--AGGYIAGSKELIDYLRTPSPSALYATSL-SPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYF 417 (519)
T ss_pred ecceehhhccc--ccceecCcHHHHhhhccCCCceeecccC-ChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHH
Confidence 4589999985 2567789999999987543322222333 44444445556665532 45567788888999
Q ss_pred HHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc---------eee
Q 015230 318 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------GFT 388 (411)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~---------~~~ 388 (411)
+..|+.. +++..-......+.+.+-. ......+.+.|+++++.+..++++. +++
T Consensus 418 r~~l~~~----gfivyG~~dSpVvplll~~-------------~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~ 480 (519)
T KOG1357|consen 418 RWELQKM----GFIVYGNNDSPVVPLLLYG-------------PAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCL 480 (519)
T ss_pred HHhhhcC----cEEEecCCCCCcceeeecC-------------cccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhh
Confidence 8888776 3333222223332332211 1112567888888877776665543 345
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q 015230 389 SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~ 408 (411)
+..+|.|+++.+++.+.++-
T Consensus 481 Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 481 SASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred cccccHHHHHHHHHHHhhhc
Confidence 78899999999999987653
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=164.20 Aligned_cols=325 Identities=15% Similarity=0.115 Sum_probs=189.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCCC-----CCHHHHH----HHHHHHhhCC-CCCEEEEeCChHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA-----PCLLENV----LAEMVISAVP-SIEMVRFVNSGTE 103 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~~-----~~~~~~~----l~~~l~~~~~-~~~~v~~~~~g~~ 103 (411)
+..+++.++. ++ .+|++++++.+.+... .+..+ ..+.... ..+.+++.++ ....+++ +||++
T Consensus 25 ~~~~~l~~~~--n~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~ 98 (416)
T PRK00011 25 EEHIELIASE--NF---VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQ 98 (416)
T ss_pred hcCeeeeccc--Cc---CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeec-CCchH
Confidence 5567877773 33 6899999998776431 11111 1122222 3446777776 3444554 46899
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhh--hhhcC--CCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAG--SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~--~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
|+..++... ..+++.|++..++|.+..... ....+ ..+..++.....+ ..|++++++.++.
T Consensus 99 al~~~l~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~ 163 (416)
T PRK00011 99 ANAAVYFAL--LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETG-------------LIDYDEVEKLALE 163 (416)
T ss_pred HHHHHHHHh--cCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccC-------------CcCHHHHHHHHHh
Confidence 999888743 356678888888876543211 11112 1122211110001 1189999999874
Q ss_pred CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchhhhhhhccCC
Q 015230 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLTTLGKIIGGG 256 (411)
Q Consensus 180 ~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~~~sK~~~~G 256 (411)
. +++++++.. ++.|...+ +++|.++|++||+++|+|++|+ |+ ..|.. ...+ +.+.-+.|++|++ +|
T Consensus 164 ~--~~k~v~~~~--~~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l-~g 232 (416)
T PRK00011 164 H--KPKLIIAGA--SAYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTL-RG 232 (416)
T ss_pred c--CCCEEEECC--CcCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCC-CC
Confidence 2 455666642 23344556 9999999999999999999985 44 22211 1111 2222245899998 46
Q ss_pred ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHH-HHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 257 LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT-LKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 257 ~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~-l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
++.|+++++ +++++.+........ ..+......++...+ .+.+.+ ++.+++++++.+++++.|+++ ++..
T Consensus 233 ~~gg~i~~~~~~~~~~l~~~~~~~~--~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~ 306 (416)
T PRK00011 233 PRGGLILTNDEELAKKINSAVFPGI--QGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER----GFRV 306 (416)
T ss_pred CCceEEEeCCHHHHHHHHHHhCccc--cCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CCee
Confidence 789999885 678777753221111 111222233333333 333322 556788888888888888875 3221
Q ss_pred EEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------Ccceeee------cCCCHH
Q 015230 333 CGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTS------LAHSSD 395 (411)
Q Consensus 333 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~~------~~~t~~ 395 (411)
... ..+.++++.+.+.. .+...+.+.|.++||.+.... ...+|+. ..+|++
T Consensus 307 ~~~~~~~~~~~i~~~~~~------------~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~ 374 (416)
T PRK00011 307 VSGGTDNHLVLVDLRSKG------------LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEA 374 (416)
T ss_pred eecCCCCeEEEEeCcccC------------CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHH
Confidence 111 23467777763211 122568888999999997421 1235662 256899
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
|++++++.|++++..
T Consensus 375 di~~l~~~l~~~~~~ 389 (416)
T PRK00011 375 EMKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-19 Score=167.08 Aligned_cols=257 Identities=16% Similarity=0.119 Sum_probs=159.1
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCC--C-------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA--P-------CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 105 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~--~-------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~ 105 (411)
+.|+|..+. .+ .++.+++++.+.++....... . .+..+++.+.+++.++ .+++++|++|+++++
T Consensus 4 ~~yld~aa~---~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~ 77 (402)
T TIGR02006 4 PIYLDYAAT---TP---VDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN 77 (402)
T ss_pred cEEeeCCcC---CC---CCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence 356776554 33 688999999888865221111 1 1335566777888887 678999999999999
Q ss_pred HHHHHHHHh-c-cCCcEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 106 MGVLRLARA-F-TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 106 ~~al~~~~~-~-~~~~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
..++..+.. . .+++.|++....|+........+ .|..+..++.... +.. |++++++.++
T Consensus 78 ~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~-------------d~~~l~~~l~--- 140 (402)
T TIGR02006 78 NLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSN-GLI-------------DLEELKAAIR--- 140 (402)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCC-CcC-------------CHHHHHHhcC---
Confidence 998875432 2 34566776666655433332222 2433344332211 111 7899988886
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhh--hhccCCccc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPV 259 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~ 259 (411)
++++++++..+++++|.+.+ +++|.++|++||+++++|++|+ .|.. ..+..+..+|++++| |.+++ ..+
T Consensus 141 ~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a---~g~~-~~~~~~~~~D~~~~s~~K~~gp-~G~ 211 (402)
T TIGR02006 141 DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS---VGKI-PINVNELKVDLMSISGHKIYGP-KGI 211 (402)
T ss_pred CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh---cCCc-ccCccccCCCEEEEehhhhcCC-Cce
Confidence 35678888888888999998 9999999999999999999997 2211 122223456777665 97652 128
Q ss_pred ccccccHHHHHHhcCCCCc----ccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHH
Q 015230 260 GAYGGRRDIMEMVAPAGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
|+++.+++....+.+.... ......+.+.....+..++++.+.+ ++..++.+++.+++++.|+++
T Consensus 212 G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 282 (402)
T TIGR02006 212 GALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI 282 (402)
T ss_pred EEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887776544333321100 0011234555666666677776654 344455666666666666543
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=162.69 Aligned_cols=308 Identities=15% Similarity=0.129 Sum_probs=192.8
Q ss_pred CcHHHHHHHHHHHHcCC---CCC-CC-----CHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEE
Q 015230 53 ADDQVLAALGETMKKGT---SFG-AP-----CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 121 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~---~~~-~~-----~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~v 121 (411)
.++.+.+++.+.++... .++ +. .....++.+.+++.++ ..+++++|+|+++++..++.. ....++.|
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~--~~~~gd~v 89 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG--LLKEGDHV 89 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh--ccCCCCEE
Confidence 56789999988888732 111 22 1445677888888886 245899999999999998864 23456778
Q ss_pred EEEeCCcCCCchhhh---hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 122 IKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 122 i~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
++....|++...... ...|..+..++.... +. .|++++++.++ +++++++++.+++++|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~-------------~d~~~l~~~~~---~~~~~v~~~~~~n~tG~ 152 (376)
T TIGR01977 90 ITTPMEHNSVARPLECLKEQIGVEITIVKCDNE-GL-------------ISPERIKRAIK---TNTKLIVVSHASNVTGT 152 (376)
T ss_pred EECcchhhHHHHHHHHHHHHcCcEEEEEecCCC-CC-------------cCHHHHHHhcC---CCCeEEEEECCCCCccc
Confidence 887766665433221 122444433332211 11 17899998885 35778888888888999
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccc-ccccccCccccccCCCcch--hhhhhhccCCcccccccccHHH-HHHhcC
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDI-MEMVAP 274 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~-~~~~~~ 274 (411)
+.+ +++|.++|+++|+++|+|++|+ |. ..+..+.+ .+|+ .++.|++++.--.|.++.+++. +..+..
T Consensus 153 ~~~----~~~i~~l~~~~~~~livD~a~~~g~---~~~~~~~~--~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~ 223 (376)
T TIGR01977 153 ILP----IEEIGELAQENGIFFILDAAQTAGV---IPIDMTEL--AIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKS 223 (376)
T ss_pred cCC----HHHHHHHHHHcCCEEEEEhhhccCc---cCCCchhc--CCCEEEecccccccCCCCceEEEEcCCcCcCceec
Confidence 998 9999999999999999999996 22 11112222 3454 4677998752225666554433 111111
Q ss_pred CCCccc-------------ccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceE-----
Q 015230 275 AGPMYQ-------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC----- 333 (411)
Q Consensus 275 ~~~~~~-------------~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 333 (411)
...... ....+.+.....+..++++.+.+ ++++++.+++.+++++.|+++ +....
T Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~----~~~~~~~~~~ 299 (376)
T TIGR01977 224 GGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREI----NKVKIYGPAD 299 (376)
T ss_pred CCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCCC
Confidence 000000 01123455666666677777665 455667777777777777654 21111
Q ss_pred EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC--------------Ccceee--ecCCCHHH
Q 015230 334 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------------FEAGFT--SLAHSSDD 396 (411)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~--------------~~~~~~--~~~~t~~~ 396 (411)
....+.++++.+... +..++.+.|.++ ||.+..+. ...+|+ ...+|++|
T Consensus 300 ~~~~~~~v~~~~~~~--------------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~d 365 (376)
T TIGR01977 300 PANRVGVVSFTVEGI--------------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEE 365 (376)
T ss_pred ccccCCeEEEEECCC--------------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHH
Confidence 112355666666321 136788999888 99987652 134677 46789999
Q ss_pred HHHHHHHHHH
Q 015230 397 IQHTITAAEK 406 (411)
Q Consensus 397 i~~~i~~l~~ 406 (411)
+++++++|++
T Consensus 366 v~~~~~~l~~ 375 (376)
T TIGR01977 366 IEKLLEALSE 375 (376)
T ss_pred HHHHHHHHhh
Confidence 9999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=154.60 Aligned_cols=323 Identities=15% Similarity=0.098 Sum_probs=197.4
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh
Q 015230 61 LGETMKKGTSFGAPCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136 (411)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~ 136 (411)
+..+++-+... +..++...+.+....... ..+ +++.|+|.+.+++.++++ .+..++.|++-..+|.+.....
T Consensus 90 ~s~alQYg~s~-G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~--~~N~gd~vlie~~ty~~AL~s~- 165 (472)
T KOG0634|consen 90 LSRALQYGQSS-GIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRT--LINRGDHVLIEEYTYPSALQSM- 165 (472)
T ss_pred hhhhhcccccc-CcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHH--hhcCCCceEEecccchHHHHhc-
Confidence 44555554322 334444444443331221 234 899999999999999986 4556788888888887533221
Q ss_pred hhcCCCCcccCCC-CCCCCCCCCCCceeecCCCCHHHHHHHHHcCC------CcEEEEEEcccCCCCCccCCCHHHHHHH
Q 015230 137 VKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNK------GEIAAIILEPVVGNSGFIAPKPDFLNAI 209 (411)
Q Consensus 137 ~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~~~~vi~~~~~~~~G~~~~~~~~l~~i 209 (411)
... ++-.++++ +..|+ +++.+++.+.... .++.+..+-|...|....+.+.+-.++|
T Consensus 166 ~a~--gv~~ipv~md~~Gi--------------~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~i 229 (472)
T KOG0634|consen 166 EAL--GVKIIPVKMDQDGI--------------DPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKI 229 (472)
T ss_pred ccc--CceEEeccccCCCC--------------CHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHH
Confidence 222 23344443 23344 7999999998632 2366777777554433344556669999
Q ss_pred HHHHHHhCCEEEEeccccccccc----c--------------------CccccccCCCcchhhhhhhccCCccccccccc
Q 015230 210 RRITKENGALLIFDEVMTGFRLA----Y--------------------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 210 ~~l~~~~~~~li~De~~~g~~~g----~--------------------~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~ 265 (411)
.+|||||++++|.||.|-=+..+ . +...+..|...-+-||||-++.|+|+||+.++
T Consensus 230 y~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~ 309 (472)
T KOG0634|consen 230 YQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGN 309 (472)
T ss_pred HHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecC
Confidence 99999999999999999422111 0 01111112222245899999999999999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec
Q 015230 266 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-------GTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 338 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 338 (411)
+-.++.+... -...|.+++.+.+...-+.++.+.++ +++..+..+...+.+.+.+-...--....+...|
T Consensus 310 ~~~l~ril~~---ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aG 386 (472)
T KOG0634|consen 310 SLFLKRILDL---AEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAG 386 (472)
T ss_pred HHHHHHHhhh---cceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcc
Confidence 8888777532 23346667777888877777766554 2223333333344444433322111223344569
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------c-ceeeec-CCCHHHHHHHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------E-AGFTSL-AHSSDDIQHTITAAEK 406 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----------~-~~~~~~-~~t~~~i~~~i~~l~~ 406 (411)
+|+|+++.- ...+. ...-....+.+...+.++||.+.+|.. + .+|++. ....++++++++++..
T Consensus 387 mFiwv~i~~-~~~~~---~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~ 462 (472)
T KOG0634|consen 387 MFIWVEIPY-INFDT---KKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGS 462 (472)
T ss_pred eEEEEEecc-ccccc---ccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHH
Confidence 999999851 00000 001122345677788899999988732 1 356653 4477899999999999
Q ss_pred HHHh
Q 015230 407 VLRQ 410 (411)
Q Consensus 407 ~~~~ 410 (411)
++++
T Consensus 463 ~ike 466 (472)
T KOG0634|consen 463 VIKE 466 (472)
T ss_pred HHHH
Confidence 8875
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=146.87 Aligned_cols=328 Identities=15% Similarity=0.133 Sum_probs=211.9
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
+..+|+-|- .+.-...++++++.++......|+. +.-..+|.+..++.+ +.+.-+|++||+.++..+++.- ..
T Consensus 21 ~~~vDLRSD----TvT~PTdeMr~am~eA~vgDdVyGe-D~tt~rLE~~vA~l~-GKEAgLFv~SGTmgNllaIm~H-c~ 93 (384)
T KOG1368|consen 21 HRSVDLRSD----TVTVPTDEMRRAMAEASVGDDVYGE-DPTTNRLEQRVAELF-GKEAGLFVPSGTMGNLLAIMVH-CH 93 (384)
T ss_pred eeccccccc----cccCChHHHHHHHhhcccCcccccC-CccHHHHHHHHHHHh-CccceeeecccccccHHHHHHH-hc
Confidence 345777775 3333567788888887665444432 233345555555555 8888999999999999999742 22
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCCCCCCCCCCceeecCCCCHHHHHHHHHcC-----CCcEEEEEE
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENN-----KGEIAAIIL 189 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~~~~vi~ 189 (411)
.++..||+-+.+.--.+.......-.++...+.. ..++.. |++++|+.++.. ...+++|++
T Consensus 94 ~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm-------------~ledIe~~ir~~~GD~H~p~T~LIcl 160 (384)
T KOG1368|consen 94 QRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTM-------------DLEDIEAAIRVPKGDCHMPPTKLICL 160 (384)
T ss_pred CCCceEEeccchheeehhccChhhhccceeEeeeeCCCCee-------------eHHHHHHhhcCCCCCccCCCceEEEe
Confidence 3455666655543322222211111222222221 111111 799999999842 245789999
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc---ccccccCccccccCCCcch--hhhhhhccCCcccccc-c
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT---GFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAY-G 263 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~---g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~-~ 263 (411)
|..+++.|....|-||+.++.++|++||+.|.+|.+.. ....|. .........|- +||||++++ |+|-+ +
T Consensus 161 ENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV--~vk~i~~~fDSVsiCLSKglgA--PVGSViV 236 (384)
T KOG1368|consen 161 ENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGV--PVKKICSAFDSVSICLSKGLGA--PVGSVIV 236 (384)
T ss_pred eccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCC--CHHHHHHhhhhhhhhhhccCCC--CcccEEE
Confidence 99888877778889999999999999999999998774 001111 11112222343 589999998 88876 8
Q ss_pred ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC-CceEEe-eecceE
Q 015230 264 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGG-YISGMF 341 (411)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~g~~~ 341 (411)
+++++++..+..+.. .++.+....+.+++++.+++. .-....+-.++++.+.+.++.. + +...+. ....++
T Consensus 237 G~k~FI~kA~~~RKa-lGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~----~~i~v~v~a~etNiv 309 (384)
T KOG1368|consen 237 GSKDFIDKARHFRKA-LGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTP----EEIRVEVPAVETNIV 309 (384)
T ss_pred ccHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhccc----cceeeecchhhccee
Confidence 899988766532222 234566677778888777753 2235566777777777777744 3 333444 346677
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHH
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
.+++.... .+++++++.+.+.||++-++....+|+ ...+|+++++..+..+.+
T Consensus 310 ~~~l~q~~------------~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 310 NMVLCQAR------------LTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred eeeccccc------------CCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHH
Confidence 77664432 234899999999999999886666666 466799999999999954
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=162.79 Aligned_cols=307 Identities=17% Similarity=0.178 Sum_probs=209.0
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCC-----C-C---CHHHHHHHHHHHhhCC-CC-CEEEEeCChHHHHHHHHHHHHh-ccC
Q 015230 50 IGHADDQVLAALGETMKKGTSFG-----A-P---CLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARA-FTG 117 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~~~~-----~-~---~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~~a~~~al~~~~~-~~~ 117 (411)
.|..++.+.+++.+.+......+ . . .+..+++.+.+++.++ .. ++|+|++|++++++.++..... ..+
T Consensus 8 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~ 87 (371)
T PF00266_consen 8 TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKP 87 (371)
T ss_dssp S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTT
T ss_pred ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccccc
Confidence 34478899999999988732211 1 1 3445677778888887 55 7999999999999999986532 567
Q ss_pred CcEEEEEeCCcCCCchhhhhh---cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 118 RERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
++.|++....|++........ .|..+..++.+....+ |++++++.+. +++++|++..+.+
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~--------------~~~~~~~~l~---~~~~lv~~~~~~~ 150 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSL--------------DLEDLEEALN---PDTRLVSISHVEN 150 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSC--------------SHHHHHHHHH---TTESEEEEESBET
T ss_pred ccccccccccccccccccccccccchhhhccccccccchh--------------hhhhhhhhhc---cccceEEeecccc
Confidence 889999999999876444333 2444444333222222 7999999997 5799999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHh
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMV 272 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~ 272 (411)
.+|...| +++|.++|+++|+++++|.+|+ .|.. ..+.....+|++ +..| ++|+--+|+++.+++.++.+
T Consensus 151 ~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~---~g~~-~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~ 221 (371)
T PF00266_consen 151 STGVRNP----IEEIAKLAHEYGALLVVDAAQS---AGCV-PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERL 221 (371)
T ss_dssp TTTBBSS----HHHHHHHHHHTTSEEEEE-TTT---TTTS-S--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHH
T ss_pred cccEEee----eceehhhhhccCCceeEechhc---cccc-cccccccccceeeecccc-cCCCCchhhheehhhhhhcc
Confidence 9999999 9999999999999999999997 2211 122223345655 5669 77643489999999999888
Q ss_pred cCCCCccc------------------ccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 273 APAGPMYQ------------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 273 ~~~~~~~~------------------~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
.+...... ...-+.+.....+..++++.+.+ +++.++..++.+++++.|+++ +..
T Consensus 222 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~----~~~ 297 (371)
T PF00266_consen 222 RPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEEL----PGI 297 (371)
T ss_dssp HTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTE
T ss_pred ccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcC----Cce
Confidence 64322111 00114566666666677777644 566677777777777777775 332
Q ss_pred eE-----EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------------cceee--ecCC
Q 015230 332 IC-----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFT--SLAH 392 (411)
Q Consensus 332 ~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------------~~~~~--~~~~ 392 (411)
.. ....+.++.+.+... +...+.+.|.++||.+..+.. ..+|+ ....
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~n 363 (371)
T PF00266_consen 298 EVLGPDDEPRRPSIVSFNLPGS--------------DADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYN 363 (371)
T ss_dssp EESSSSCGGBGTTEEEEEETTS--------------SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTS
T ss_pred eEeeecccccccceEEEeecCC--------------CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCC
Confidence 21 233566777777322 237889999999999998643 34676 4677
Q ss_pred CHHHHHHH
Q 015230 393 SSDDIQHT 400 (411)
Q Consensus 393 t~~~i~~~ 400 (411)
|++|+|++
T Consensus 364 t~~dv~~l 371 (371)
T PF00266_consen 364 TEEDVDRL 371 (371)
T ss_dssp SHHHHHHH
T ss_pred CHHHHhhC
Confidence 99999975
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=160.64 Aligned_cols=310 Identities=13% Similarity=0.056 Sum_probs=195.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
.++.++++.+.+..+..+ +.....+++.+++++.+ +.+++++|+||++|+..+++.+ ...+++.||+..++|.+...
T Consensus 10 ~~~e~~a~~~~~~~~~~~-~~g~~~~~~e~~la~~~-g~~~~v~~~sgt~aL~~~l~al-~~~pGd~Viv~~~t~~~~~~ 86 (376)
T TIGR02379 10 TGQELEYIAEAISEGKLS-GDGPFSRRCETWLENRT-GTKKALLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTAN 86 (376)
T ss_pred CHHHHHHHHHHHHcCCcc-CCcHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHH
Confidence 455678898988875432 23566788888888877 6678999999999999988643 34567889999888886543
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
.. ...|..+..++........ |++++++.++ +++++|+ |++ .+|...+ +++|.++|
T Consensus 87 ~~-~~~G~~~v~vd~d~~~~~~-------------d~~~le~~i~---~~tk~Ii--p~~-~~G~~~d----~~~I~~la 142 (376)
T TIGR02379 87 AF-VLRGAKIVFVDIRPDTMNI-------------DETLIESAIT---HRTKAIV--PVH-YAGVACD----MDTIMALA 142 (376)
T ss_pred HH-HHcCCEEEEEecCCCcCCC-------------CHHHHHHhcC---cCceEEE--EeC-CCCCccC----HHHHHHHH
Confidence 33 3445555554433211111 7888998886 3566665 333 3566666 99999999
Q ss_pred HHhCCEEEEeccccccccccCccccccCCCcchhhhh----hhccCCcccccccc-cHHHHHHhcCCCCc----------
Q 015230 214 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGG-RRDIMEMVAPAGPM---------- 278 (411)
Q Consensus 214 ~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s----K~~~~G~~~g~~~~-~~~~~~~~~~~~~~---------- 278 (411)
++||++||+|++|+-. ..+.....+...|+.+|| |.+..|.+.|+++. ++++.+.++..+..
T Consensus 143 ~~~~i~vIeDaa~~~g---~~~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (376)
T TIGR02379 143 NKHQLFVIEDAAQGVM---STYKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRG 219 (376)
T ss_pred HHCCCEEEEECccccC---CccCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCcccccc
Confidence 9999999999999722 111111123334677777 98987778898865 47777766521100
Q ss_pred --------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH----hcCCce-EEeeecceEEEEE
Q 015230 279 --------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAGHAI-CGGYISGMFGFFF 345 (411)
Q Consensus 279 --------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-~~~~~g~~~~~~~ 345 (411)
..+..+..+.+.++.+.+.++.+ ++..++.+++.+++.+.|.++.. ..+... .....-.++++.+
T Consensus 220 ~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (376)
T TIGR02379 220 EVDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKL 297 (376)
T ss_pred CCCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEE
Confidence 01234455667777776667655 44556666777777777765421 111100 0000111233433
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------C---------------cceeee--cCCCHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------F---------------EAGFTS--LAHSSDDI 397 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------~---------------~~~~~~--~~~t~~~i 397 (411)
.. ..+.+++.+.|.++||.+.+.. . ..+++| ...|++++
T Consensus 298 ~~-------------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~ 364 (376)
T TIGR02379 298 KD-------------EDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQ 364 (376)
T ss_pred CC-------------cCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHH
Confidence 21 1123689999999999876321 0 014554 45799999
Q ss_pred HHHHHHHHHHH
Q 015230 398 QHTITAAEKVL 408 (411)
Q Consensus 398 ~~~i~~l~~~~ 408 (411)
+..++.|++++
T Consensus 365 ~~i~~~i~~~~ 375 (376)
T TIGR02379 365 ARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=157.95 Aligned_cols=310 Identities=14% Similarity=0.080 Sum_probs=181.8
Q ss_pred CcHHHHHHHHHHH-HcC-CCCCC-----CCHHHHHHHH----HHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEE
Q 015230 53 ADDQVLAALGETM-KKG-TSFGA-----PCLLENVLAE----MVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 121 (411)
Q Consensus 53 ~~~~v~~a~~~~l-~~~-~~~~~-----~~~~~~~l~~----~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~v 121 (411)
.||++++++...+ .+. .++++ -.+...++.+ .+++.++.....++++||+.|+..++... ..+++.|
T Consensus 40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al--~~~GD~V 117 (416)
T PRK13034 40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLAL--LKPGDTI 117 (416)
T ss_pred CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHh--cCCCCEE
Confidence 5999999999996 542 22211 1455666766 88888854433356789999999999753 4566777
Q ss_pred EEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC------CCCHHHHHHHHHcCCCcEEEEEEc-ccCC
Q 015230 122 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP------FNDVSALENLFENNKGEIAAIILE-PVVG 194 (411)
Q Consensus 122 i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~~~~~~~~~~~vi~~-~~~~ 194 (411)
++...++.+...........+... ....+. ..|++++++.++.. ++++|+++ +++
T Consensus 118 l~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~~~~d~~~le~~l~~~--~~klVi~~~~~~- 179 (416)
T PRK13034 118 LGMSLSHGGHLTHGAKVSLSGKWY---------------NAVQYGVDRLTGLIDYDEVEELAKEH--KPKLIIAGFSAY- 179 (416)
T ss_pred EEcCccceeeeecCCcceecccee---------------eeEEcccccccCCcCHHHHHHHHhhc--CCeEEEECCCcc-
Confidence 777666654221111100000000 001111 13899999888643 45777774 443
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcc--hhhhhhhccCCcccccccccH-HHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPD--LTTLGKIIGGGLPVGAYGGRR-DIM 269 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d--~~~~sK~~~~G~~~g~~~~~~-~~~ 269 (411)
|...+ +++|.++|++||++||+|++|+ |. ..|... . ..+ ..| +.+++|+++|+ ..|+++++. .+.
T Consensus 180 --g~~~d----l~~l~~la~~~g~~livD~Aha~G~~~~g~~~-~-~~~-~~Di~~~s~~K~l~g~-~GG~v~~~~~~~~ 249 (416)
T PRK13034 180 --PRELD----FARFREIADEVGALLMVDMAHIAGLVAAGEHP-N-PFP-HAHVVTTTTHKTLRGP-RGGMILTNDEEIA 249 (416)
T ss_pred --ccccC----HHHHHHHHHHcCCEEEEeCcccccCcccCCCC-C-CCC-CceEEEEeCcccCCCC-CCeEEEECcHHHH
Confidence 45556 9999999999999999999996 44 333211 1 111 245 44789999652 234555554 444
Q ss_pred HHhcCCCCcccccCCCCCHHHHHH-HHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEE
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTA-GIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFF 345 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~-~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~ 345 (411)
+.++.. .+.+.+-...+...++ +.+.++.+.. ++.++++.++.++++++|+++ ++.... .....++.+.+
T Consensus 250 ~~~~~~--~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~----G~~~~~~~~~t~i~~v~~ 323 (416)
T PRK13034 250 KKINSA--VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER----GYDLVSGGTDNHLLLVDL 323 (416)
T ss_pred HHHHhh--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc----CCEeccCCCCCcEEEEEc
Confidence 444421 1111111122333333 3344444422 345788999999999999876 222111 12355666666
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC------C----Ccceeee--c----CCCHHHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS------Q----FEAGFTS--L----AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~------~----~~~~~~~--~----~~t~~~i~~~i~~l~~~~~ 409 (411)
.+.. .....+.+.|.++||++... . ...+|+. . .++++|++++++.|++++.
T Consensus 324 ~~~~------------~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 324 RPKG------------LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred CCCC------------CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 4322 12255668888899999752 1 1236763 3 6789999999999998876
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 392 ~ 392 (416)
T PRK13034 392 D 392 (416)
T ss_pred c
Confidence 3
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=162.92 Aligned_cols=237 Identities=19% Similarity=0.153 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
......++.+.+++..+ .+++++++||++|+..++... ..+++.|++..+.|++.........
T Consensus 38 ~~p~~~~le~~la~l~g-~~~a~~~~sG~~Ai~~~l~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~-------------- 100 (369)
T cd00614 38 GNPTVDALEKKLAALEG-GEAALAFSSGMAAISTVLLAL--LKAGDHVVASDDLYGGTYRLFERLL-------------- 100 (369)
T ss_pred CChhHHHHHHHHHHHHC-CCCEEEEcCHHHHHHHHHHHH--cCCCCEEEECCCCcchHHHHHHHHH--------------
Confidence 46667888888888874 467788889999999999753 3466788888888876442221111
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
...+..+..++.+|++++++.++ +++++|++|+++|+.|.+.+ +++|.++|++||+++|+|++|+.. .
T Consensus 101 --~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~---~ 168 (369)
T cd00614 101 --PKLGIEVTFVDPDDPEALEAAIK---PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATP---Y 168 (369)
T ss_pred --hhcCeEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcch---h
Confidence 01123455566668899988886 36789999999989999988 999999999999999999999622 1
Q ss_pred CccccccCCCcch--hhhhhhccC-C-cccccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 234 GGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 234 ~~~~~~~~~~~d~--~~~sK~~~~-G-~~~g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
. ........|+ .|++|.++| | .+.|++++++ ++++.++... .......+++.++++...++.+ +..++
T Consensus 169 ~--~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~---~~~g~~~~p~~a~~~l~~l~tl--~~r~~ 241 (369)
T cd00614 169 L--QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR---LALGTILSPFDAWLLLRGLKTL--PLRME 241 (369)
T ss_pred c--CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH---HhhCCCCCHHHHHHHHcCCCCH--HHHHH
Confidence 1 1112223454 489999985 4 7789998876 7777776321 1123455677777665555432 33567
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCc-e---------EEeeecceEEEEEe
Q 015230 309 YLNKITGELTQGIIDAGK----KAGHA-I---------CGGYISGMFGFFFT 346 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~----~~~~~-~---------~~~~~g~~~~~~~~ 346 (411)
+..++..++.+.|++... .+|.. . ...+.|.++.|++.
T Consensus 242 ~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 242 RHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 778888888888876521 01210 0 11345888888884
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=157.66 Aligned_cols=351 Identities=14% Similarity=0.079 Sum_probs=189.2
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~ 111 (411)
..|..++||.+-.++ ..+.++..+++..+. .|... .-..+|.+.+++.+ +.+++++|+||++|+..+++.
T Consensus 17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~~Y~~~-~g~~~Leeaia~~~-g~~~vv~t~~Gt~Al~la~~a 87 (431)
T cd00617 17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDEAYAGS-KSFYDLEDAVQDLF-GFKHIIPTHQGRGAENILFSI 87 (431)
T ss_pred CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCCccCCC-CCHHHHHHHHHHHH-CCCeEEEcCCHHHHHHHHHHH
Confidence 456677898877433 234455555555532 33322 22234444444444 667899999999999999874
Q ss_pred HHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-CCHHHHHHHHHcC-CCcEEEEEE
Q 015230 112 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENN-KGEIAAIIL 189 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~-~~~~~~vi~ 189 (411)
+.+++++|..++.|.. +.......|..+..++.....+... ... +.. -|++++++.++.. ..++++|++
T Consensus 88 ---l~~pGD~V~~~~~f~~-~~~~i~~~Ga~pv~v~i~~~~~~~~---~~p--f~gniD~e~Le~~I~~~~~~~~~~I~v 158 (431)
T cd00617 88 ---LLKPGRTVPSNMHFDT-TRGHIEANGAVPVDLVIDEAHDAQE---LIP--FKGNIDVAKLEKLIDEVGAENIPYIVL 158 (431)
T ss_pred ---hCCCCCEEccCCcccc-hHHHHHhCCCEeEEEeccccccccc---ccC--CCCCcCHHHHHHHhCcccCCCccEEEE
Confidence 2334444544444443 3444455555444433321111000 000 000 1899999999853 234777777
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-c---c---ccccCccccccCCCcchhhhhhhcc-CCcc---
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F---RLAYGGAQEYFGVTPDLTTLGKIIG-GGLP--- 258 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g---~---~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~--- 258 (411)
+..+|.+|..+.+.+.+++|.++|++||++||.|+++. + | |.+.........+...+.++||.+. +|++
T Consensus 159 ~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~ 238 (431)
T cd00617 159 TITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGL 238 (431)
T ss_pred ECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCC
Confidence 65555543344456669999999999999999999975 1 1 0011000000011123456788776 5665
Q ss_pred --cc-cccccH-HHHHHhcCCCCccc-ccCC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 259 --VG-AYGGRR-DIMEMVAPAGPMYQ-AGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 259 --~g-~~~~~~-~~~~~~~~~~~~~~-~~t~-~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+| |+++++ ++++.++....... ..+. +.+....++...+++...+.+..++..++.+++.+.|++. ++..
T Consensus 239 ~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~----G~~v 314 (431)
T cd00617 239 VNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA----GVPI 314 (431)
T ss_pred CccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC----CCCc
Confidence 44 778875 58887763211111 1111 1233333333335543222222333333447777777766 5444
Q ss_pred EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----------------Ccceee--e-cC
Q 015230 333 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------------FEAGFT--S-LA 391 (411)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~-----------------~~~~~~--~-~~ 391 (411)
..+..|++++++...... .+. +..-.+..++..| .+.||.+.--+ ...+|+ | ..
T Consensus 315 ~~P~Ggh~v~~d~~~~~~-~~~----~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~ 389 (431)
T cd00617 315 VEPAGGHAVFIDAREFLP-HIP----QEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRV 389 (431)
T ss_pred cCCCcceEEEEEhHHhcC-CCC----cccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccc
Confidence 445667899998754210 000 0111235666444 55588864311 112565 4 46
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
.|.+++|.+.+.|..++++
T Consensus 390 ~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 390 YTQDHMDYVAAAVIALYER 408 (431)
T ss_pred cCHHHHHHHHHHHHHHHhh
Confidence 6999999999999887754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-18 Score=158.73 Aligned_cols=245 Identities=16% Similarity=0.079 Sum_probs=157.2
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCC---------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh-c-cCCc
Q 015230 52 HADDQVLAALGETMKKGTSFGAP---------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-F-TGRE 119 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~~~---------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~-~-~~~~ 119 (411)
..++++.+++.+.+......... .+..+++.+.+++.++ .+++++||+|+++++..++..+.. . .+++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~ 89 (364)
T PLN02651 10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKK 89 (364)
T ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCC
Confidence 47889999998888652211111 3335677788888887 678999999999999998875532 2 3456
Q ss_pred EEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 120 RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
+|++....|++.......+ .|..+..++......+ |++++++.++ ++++++++..+++.+|
T Consensus 90 ~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~--------------d~~~l~~~i~---~~t~lv~v~~~~n~tG 152 (364)
T PLN02651 90 HVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLV--------------DLDELAAAIR---PDTALVSVMAVNNEIG 152 (364)
T ss_pred EEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcC--------------CHHHHHHhcC---CCcEEEEEECCCCCce
Confidence 7777666666533332222 2333333332211111 7899998886 3578888888888899
Q ss_pred ccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcC
Q 015230 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
.+.| +++|.++|++||+++++|.+|+ .|. .+..+.+ .+|++ +..|+ .|..-+|+++.+++....+.+
T Consensus 153 ~~~~----l~~I~~~~~~~g~~~~vD~a~~---~g~~~~~~~~~--~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p 222 (364)
T PLN02651 153 VIQP----VEEIGELCREKKVLFHTDAAQA---VGKIPVDVDDL--GVDLMSISGHKI-YGPKGVGALYVRRRPRVRLEP 222 (364)
T ss_pred eccc----HHHHHHHHHHcCCEEEEEcchh---hCCcccCcccC--CCCEEEechhhh-CCCCceEEEEEcCCCCCCCCc
Confidence 9999 9999999999999999999997 221 1222333 34654 56696 332338888888776655543
Q ss_pred CCCcc----cccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHH
Q 015230 275 AGPMY----QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 275 ~~~~~----~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~ 323 (411)
..... .....+.+..+..+..++++.+.+ ++..++.+++.+++++.|++
T Consensus 223 ~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~ 277 (364)
T PLN02651 223 LMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA 277 (364)
T ss_pred cccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 21100 011335566777777778887654 44455666666666666654
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=160.70 Aligned_cols=221 Identities=15% Similarity=0.126 Sum_probs=144.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.+...+++.+.+++.+ +.+.+++++||++|+..++... ...++.|++..+.|.+.........
T Consensus 74 ~~Pt~~~LE~~lA~l~-g~~~~l~~~sG~~Ai~~al~al--~~~GD~Vl~~~~~Y~~~~~~~~~~~-------------- 136 (418)
T PLN02242 74 FNPTVLNLGRQMAALE-GTEAAYCTASGMSAISSVLLQL--CSSGGHVVASNTLYGGTHALLAHFL-------------- 136 (418)
T ss_pred CChhHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHHH--hCCCCEEEEcCCcHHHHHHHHHHhh--------------
Confidence 4666788888888887 5567789999999999998743 3466788888777754322111000
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
....+..+..++..|+++++++++. .++++|+++.++|++|.+.+ +++|.++|++||++||+||+|+.+....
T Consensus 137 -~~~~G~~~~~~d~~d~e~l~~~i~~--~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~~~~ 209 (418)
T PLN02242 137 -PRKCNITTTFVDITDLEAVKKAVVP--GKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMVLSP 209 (418)
T ss_pred -hhccCceEEEcCCCCHHHHHHhcCc--CCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccCCCH
Confidence 0001223344444588999988863 24788889988888898887 9999999999999999999997431111
Q ss_pred CccccccCCCcchhhhhhhccC-Ccc-cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYL 310 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G~~-~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~ 310 (411)
..++.+.-+.|+||.+++ |.+ .||+++++++++.+....... ....+..+..+.++..+.. +.. +..+++.
T Consensus 210 ----~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~-~~~~g~~~~~~~A~l~~~~-l~tl~~r~~~~ 283 (418)
T PLN02242 210 ----ARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA-LMLLGPTMNPKVAFELSER-LPHLSLRMKEH 283 (418)
T ss_pred ----HHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh-hhccCCCCCHHHHHHHHcC-CCcHHHHHHHH
Confidence 112333335689999985 666 588899998888776322110 0112223333333333322 222 3455678
Q ss_pred HHHHHHHHHHHHHH
Q 015230 311 NKITGELTQGIIDA 324 (411)
Q Consensus 311 ~~~~~~~~~~l~~~ 324 (411)
++++.++.+.|++.
T Consensus 284 ~~~a~~la~~L~~~ 297 (418)
T PLN02242 284 CRRAMEYAKRMKEL 297 (418)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888876
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-18 Score=158.57 Aligned_cols=286 Identities=15% Similarity=0.076 Sum_probs=179.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.+....++.+.+++.++. +..++++||+.|+..++... ..+++.|++..+.|.+...........
T Consensus 59 ~~pt~~~Le~~lA~l~G~-~~al~~~sG~~Ai~~~l~al--~~~Gd~Vv~~~~~y~~~~~~~~~~~~~------------ 123 (386)
T PRK06767 59 GNPTVKLFEERMAVLEGG-EEALAFGSGMAAISATLIGF--LKAGDHIICSNGLYGCTYGFLEVLEEK------------ 123 (386)
T ss_pred CCcchHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCcHHHHHHHHHHHHhh------------
Confidence 455568888888888864 46677778999988877532 345677777776665432222111111
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
.+.++..++..|++++++.++ +++++|+++.++|++|.+.+ +++|.++|+++|+++|+|++|+....+.
T Consensus 124 ----~gi~~~~~~~~d~~~l~~~i~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~~~~~ 192 (386)
T PRK06767 124 ----FMITHSFCDMETEADIENKIR---PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSPYLQR 192 (386)
T ss_pred ----cCeEEEEeCCCCHHHHHHhhC---cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 011222333347888888876 35788888888888898888 9999999999999999999996211111
Q ss_pred CccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
.. ..+.+.-+.|++|.++| |.++ |+++++++.++.+........+ ...+++.++.+...++.+ +...++.+
T Consensus 193 pl---~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g--~~~~~~~a~l~~~~L~tl--~~r~~~~~ 265 (386)
T PRK06767 193 PL---ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIG--GIMAPFDAWLLLRGLKTL--AVRMDRHC 265 (386)
T ss_pred ch---hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhC--CCCCHHHHHHHHcCCCcH--HHHHHHHH
Confidence 11 12332234588999986 7775 7888888877664311111111 123556555555444322 33456677
Q ss_pred HHHHHHHHHHHHHHHhcCCceE------------EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 312 KITGELTQGIIDAGKKAGHAIC------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
++..++.+.|++. |.+.. ..+.|.++.|++.+ ......++.+.|+..++.++
T Consensus 266 ~~a~~la~~L~~~----p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~------------~~~~~~~f~~~l~~~~~~~s 329 (386)
T PRK06767 266 DNAEKIVSFLKNH----DAVEGVWYPEGELASRQMKRGGGVISFSIKG------------GKEETQAFINDLHFITIAVS 329 (386)
T ss_pred HHHHHHHHHHHcC----CCccEEECCCcHHHHHhCCCCCceEEEEEcC------------CHHHHHHHHHhCCccEEecC
Confidence 7888888887765 32221 22457888998842 22345788899888888877
Q ss_pred cCCCcc---------------------------eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 380 PSQFEA---------------------------GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ~~~~~~---------------------------~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
-|+... +|+ +.--|+.+.+++-|.++++.
T Consensus 330 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~--svGlE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 330 LGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRL--SVGLESWEDIVSDLEQALKK 385 (386)
T ss_pred CCCcCccccCCCccccccCCHHHHHhcCCCCCeEEE--EeccCCHHHHHHHHHHHHhh
Confidence 765332 222 22335677888888887764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-17 Score=138.80 Aligned_cols=307 Identities=13% Similarity=0.156 Sum_probs=189.0
Q ss_pred CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhc--cCCcE--EEEEeCCcCCCchhhhhhcCCCCc
Q 015230 72 GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF--TGRER--IIKFEGCYHGHADPFLVKAGSGVA 144 (411)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~--~~~~~--vi~~~~~~~~~~~~~~~~~g~~~~ 144 (411)
++...+.+.+++.+.+.++ ..+++.+|||...+...+.-+.... .+..+ ++-..+.|-|..+.-+.- . ..
T Consensus 74 QG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~--d-~f 150 (417)
T COG3977 74 QGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEE--D-LF 150 (417)
T ss_pred cchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCc--c-ce
Confidence 3447778999999999997 4789999999999888877643222 22222 333455666643322110 0 00
Q ss_pred ccCCCCCCCCCCCCCCceeecC-CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 145 TLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
+-..|-..-.+ --.++ +-|.+.++- .+++.+|++.-..|++|.+-.++| +.+|.++++.||++|++|
T Consensus 151 Vs~kP~iel~~------~g~FKY~vDF~~l~i-----~e~~g~ic~SRPtNPTGNVlTdeE-~~kldalA~~~giPliID 218 (417)
T COG3977 151 VSAKPNIELLP------AGQFKYHVDFEHLHI-----GESTGAICVSRPTNPTGNVLTDEE-LAKLDALARQHGIPLIID 218 (417)
T ss_pred eeccCCccccc------ccceeeccCHHHccc-----ccccceEEecCCCCCCCCcccHHH-HHHHHHHhhhcCCcEEEe
Confidence 00001000000 00011 116666542 247888888765555555443333 999999999999999999
Q ss_pred cccccc-ccccCcccccc-CCCcc---hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHH
Q 015230 224 EVMTGF-RLAYGGAQEYF-GVTPD---LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 298 (411)
Q Consensus 224 e~~~g~-~~g~~~~~~~~-~~~~d---~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l 298 (411)
.+|. . .++-.|. +.. -..++ ..|+||.=-.|.|.|.+++++++++.+..+.... +..+..+..|.+...+
T Consensus 219 nAYg-~PFP~iifs-d~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~ii---sLap~~~G~Aia~~mi 293 (417)
T COG3977 219 NAYG-VPFPGIIFS-DATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGII---SLAPGRMGPAIAAEMI 293 (417)
T ss_pred cccC-CCCCceecc-cccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhcccee---eecCCCccHHHHHHHh
Confidence 9994 3 2332221 111 11233 3467885446889999999999999987544322 3333334444444444
Q ss_pred HH-----HhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH
Q 015230 299 KR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373 (411)
Q Consensus 299 ~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 373 (411)
+. +.+.-++.-++++.+.....|+.....+++..+......|+|+-+.+.++++ .++++.|+.
T Consensus 294 e~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPItt------------~~LYq~LKa 361 (417)
T COG3977 294 ESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITT------------EELYQRLKA 361 (417)
T ss_pred hcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCCCH------------HHHHHHHHh
Confidence 31 1112223335555555555666555555665555555668888887766655 899999999
Q ss_pred cCeEeccCCCc-------------ceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 374 EGVYFAPSQFE-------------AGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 374 ~Gi~v~~~~~~-------------~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+++.|+.+. ++|++...+++.+++++.+|.+.+.+
T Consensus 362 ~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~ 411 (417)
T COG3977 362 RGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVER 411 (417)
T ss_pred CeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999998532 27889999999999999999887654
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=157.01 Aligned_cols=256 Identities=18% Similarity=0.143 Sum_probs=153.3
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHH--cCCCCCCC---------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMK--KGTSFGAP---------CLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~--~~~~~~~~---------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
.|+|..+. +..++.+.+++.+.+. ........ .+..+++.+.+++.++ .++++++++|++++
T Consensus 5 iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~a 78 (404)
T PRK14012 5 IYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATES 78 (404)
T ss_pred EEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHH
Confidence 45664443 2367889999988886 21111110 1345667788888887 56889999999999
Q ss_pred HHHHHHHHHh--ccCCcEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 105 CMGVLRLARA--FTGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 105 ~~~al~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+..++..+.. ..+++.|++.+..|+........+ .|..+..++... .+.. |++++++.++
T Consensus 79 l~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~-~g~~-------------d~~~l~~~i~-- 142 (404)
T PRK14012 79 DNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS-NGII-------------DLEKLEAAMR-- 142 (404)
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC-CCcC-------------CHHHHHHhcC--
Confidence 9999875432 245667777777776543333222 244333333221 1111 8899999886
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcc
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLP 258 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~ 258 (411)
++++++++..+++++|.+.+ +++|.++|++||+++|+|++|+ .|.. ..+.....+|++ ++.|.++++ .
T Consensus 143 -~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~---~g~~-~~~~~~~~~D~~~~s~~K~~gp~-g 212 (404)
T PRK14012 143 -DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS---VGKV-PIDLSKLKVDLMSFSAHKIYGPK-G 212 (404)
T ss_pred -CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh---cCCc-ccCcccCCCCEEEEehhhccCCC-c
Confidence 35678888888888999998 9999999999999999999997 2211 111112346665 455976532 4
Q ss_pred cccccccHHHHHHhcCCCCc--cc--ccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHH
Q 015230 259 VGAYGGRRDIMEMVAPAGPM--YQ--AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~--~~--~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+|+++.+++....+.+.... .. ....+.+........++++..+. ++..++.+++.+++.+.|+++
T Consensus 213 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 284 (404)
T PRK14012 213 IGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI 284 (404)
T ss_pred eEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 78887776543333210000 00 00112233333333345554433 334555666666666666553
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=155.68 Aligned_cols=308 Identities=10% Similarity=0.016 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh
Q 015230 55 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 134 (411)
Q Consensus 55 ~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 134 (411)
++..+++.+.++.+..+ +.....+++.+++++.+ +.+++++++||++|+..++.++ ...+++.|++..++|.+...
T Consensus 11 ~~~~~~~~~~l~~~~~~-g~~~~~~~~e~~la~~~-g~~~~v~~~sgt~al~~~l~~~-~~~~Gd~Viv~~~t~~~~~~- 86 (375)
T PRK11706 11 GTELDYIQQAMSSGKLC-GDGGFTRRCQQWLEQRF-GSAKVLLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTAN- 86 (375)
T ss_pred HHHHHHHHHHHHcCCcc-CCCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHh-CCCCCCEEEECCCCcHHHHH-
Confidence 34567788888875432 24566788888888887 5679999999999999887643 34567889998888886543
Q ss_pred hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHH
Q 015230 135 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 214 (411)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~ 214 (411)
+....|..+..++.... ++. .|++++++.++. ++++|++.. ..|...+ +++|.++|+
T Consensus 87 ~~~~~G~~~v~~d~d~~-~~~------------~d~~~le~~i~~---~tk~i~~~~---~~G~~~~----~~~i~~la~ 143 (375)
T PRK11706 87 AFVLRGAKIVFVDIRPD-TMN------------IDETLIEAAITP---KTRAIVPVH---YAGVACE----MDTIMALAK 143 (375)
T ss_pred HHHHcCCEEEEEecCCC-cCC------------cCHHHHHHhcCC---CCeEEEEeC---CCCCccC----HHHHHHHHH
Confidence 33444554444333211 111 178999988863 456666432 3566666 999999999
Q ss_pred HhCCEEEEecccccc-ccccCccccccCCCcchhhhh----hhccCCcccccccccHHHHHHhcCCCC------c-----
Q 015230 215 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGRRDIMEMVAPAGP------M----- 278 (411)
Q Consensus 215 ~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~s----K~~~~G~~~g~~~~~~~~~~~~~~~~~------~----- 278 (411)
+||++||+|++|+-. ..+.. ..+-..|+.+|| |.++.|.+.+++..++++.+.++.... .
T Consensus 144 ~~~i~vIeD~a~a~g~~~~~~----~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 219 (375)
T PRK11706 144 KHNLFVVEDAAQGVMSTYKGR----ALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQ 219 (375)
T ss_pred HcCCEEEEECccccccccCCe----eeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccC
Confidence 999999999999722 21111 112223666666 999866666666767777764432110 0
Q ss_pred -------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH----hcCCc-eEEeeecceEEEEEe
Q 015230 279 -------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAGHA-ICGGYISGMFGFFFT 346 (411)
Q Consensus 279 -------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~-~~~~~~g~~~~~~~~ 346 (411)
..+.++..+.+.++.+...++.+ ++..++.+++.+++.+.|..+.. ..+.. ........++++.+.
T Consensus 220 ~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T PRK11706 220 VDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR 297 (375)
T ss_pred CCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC
Confidence 01223334556666666666554 44556666666677676665420 00100 000111224444442
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------------C-c---------ceeee--cCCCHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------------F-E---------AGFTS--LAHSSDDIQ 398 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------------~-~---------~~~~~--~~~t~~~i~ 398 (411)
+ .....++.+.|.++||.+.... . . .+.+| ...+++|++
T Consensus 298 ~-------------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~ 364 (375)
T PRK11706 298 D-------------LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQR 364 (375)
T ss_pred C-------------cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHH
Confidence 1 1234789999999999864220 0 0 13444 346899999
Q ss_pred HHHHHHHHHH
Q 015230 399 HTITAAEKVL 408 (411)
Q Consensus 399 ~~i~~l~~~~ 408 (411)
..++.|++++
T Consensus 365 ~i~~~i~~~~ 374 (375)
T PRK11706 365 TVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHh
Confidence 9999999865
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-17 Score=137.91 Aligned_cols=310 Identities=11% Similarity=0.082 Sum_probs=206.0
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 48 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
+.+||.||++.+-+.+.++. +...+. ...-+++..+|+.+.+.|+.- ...+++.++++.
T Consensus 39 ~~lgh~sPe~~qIm~~v~eg-----------------ikyVFkT~n~~tf~isgsGh~g~E~al~N--~lePgd~vLv~~ 99 (385)
T KOG2862|consen 39 PSLGHMSPEFVQIMDEVLEG-----------------IKYVFKTANAQTFVISGSGHSGWEAALVN--LLEPGDNVLVVS 99 (385)
T ss_pred CccccCCHHHHHHHHHHHHH-----------------HHHHhccCCCceEEEecCCcchHHHHHHh--hcCCCCeEEEEE
Confidence 45666666655544444333 333443 345677888999999999975 345777888777
Q ss_pred CCcCCCchhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 126 GCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 126 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.+-.+....-+ ...|.++++++.+....+ .++.+.+.+.++ ++.+|++..+.+++|+.++-
T Consensus 100 ~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~--------------~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~~-- 161 (385)
T KOG2862|consen 100 TGTWGQRAADCARRYGAEVDVVEADIGQAV--------------PLEEITEKLSQH--KPKAVFVTHGDSSTGVLQDL-- 161 (385)
T ss_pred echHHHHHHHHHHhhCceeeEEecCcccCc--------------cHHHHHHHHHhc--CCceEEEEecCccccccchH--
Confidence 66555433332 334667777655555554 689999999976 78899999999999998872
Q ss_pred HHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCC----ccc
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP----MYQ 280 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~----~~~ 280 (411)
++.+.++|++|++++++|.+-+ -.|..|.+|.|+++.......|++++---++.+..+++..+.++..+. .++
T Consensus 162 -~~~~g~lc~k~~~lllVD~VaS--lggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yF 238 (385)
T KOG2862|consen 162 -LAISGELCHKHEALLLVDTVAS--LGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYF 238 (385)
T ss_pred -HHHHHHHhhcCCeEEEEechhh--cCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEE
Confidence 5667789999999999998886 234678899999977677788999851114447778888877764332 110
Q ss_pred -----c-----------cCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceE
Q 015230 281 -----A-----------GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 341 (411)
Q Consensus 281 -----~-----------~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 341 (411)
. ...+.+........++|+.+.+ ++..++.+++.++++..|+++.-+ .
T Consensus 239 d~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq-------------~ 305 (385)
T KOG2862|consen 239 DILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQ-------------L 305 (385)
T ss_pred eHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------------c
Confidence 0 0124455556666777776554 677788999999999999987322 1
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceee---ecCCCHHHHHHHHHHHHHHHHh
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFT---SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~---~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+..-...........+.|...+..++...+..+ ++.+..+- ...+|| ..+.+.+.++..++.|..++.+
T Consensus 306 fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 306 FVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred eecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 111111111111222346666778999999999 44444432 233677 3456889999999999988764
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=146.05 Aligned_cols=348 Identities=18% Similarity=0.237 Sum_probs=228.1
Q ss_pred eEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CCC------CCCCHHHHHHHHHHHhhCCC
Q 015230 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPS 91 (411)
Q Consensus 20 ~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~~------~~~~~~~~~l~~~l~~~~~~ 91 (411)
.++.+..+..++ .||+.+++|.+. |++|+ .++++++.+...+++. .+. .++-+.+..+.+.+++-.+-
T Consensus 79 ~v~e~~~~~~~~-i~G~~~~N~aS~---NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~ 154 (467)
T KOG1358|consen 79 PVLESVMLPHVT-IDGKDVLNFASA---NFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGT 154 (467)
T ss_pred cccccccCCceE-ecCceeecccch---hhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCC
Confidence 446666677776 899999999999 99999 8999999999999993 332 33455566666777666655
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHH
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (411)
.+.+++.. |-.++..++. ++.++++|++.+...+......+.+ ....+..+.|||++
T Consensus 155 E~aivYs~-gF~ti~S~ip---afsKrGDIi~~de~~nfaIq~Glql-------------------SRS~i~~Fkhndm~ 211 (467)
T KOG1358|consen 155 EDAIVYSY-GFSTIESAIP---AFSKRGDIIFVDEAVNFAIQKGLQL-------------------SRSTISYFKHNDME 211 (467)
T ss_pred cceeeecc-ccchhhhcch---hhhccCcEEEEehhhhHHHHHHHhh-------------------hhheeEEecCCCHH
Confidence 56666655 7778888887 7788888888777655321111111 22357778999999
Q ss_pred HHHHHHHcCC-------C---cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCcccc
Q 015230 172 ALENLFENNK-------G---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQE 238 (411)
Q Consensus 172 ~l~~~~~~~~-------~---~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~ 238 (411)
++++.+.+.. . ..+.+++|....|+|.+.| +.+|.++..||+..+|.||.++ |. ++| .+..+
T Consensus 212 ~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG~lg~~G-rGvte 286 (467)
T KOG1358|consen 212 DLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFGVLGKTG-RGVTE 286 (467)
T ss_pred HHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccccccccC-ccccc
Confidence 9988776421 1 1567899999999999999 9999999999999999999996 55 444 34566
Q ss_pred ccCCC---cchhh--hhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHH
Q 015230 239 YFGVT---PDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNK 312 (411)
Q Consensus 239 ~~~~~---~d~~~--~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~ 312 (411)
|+++. .|+++ +.-++++| -|+.+++.-+++.-+-....+.+ +-..+|....++..++++++. ++..+.++.
T Consensus 287 H~~v~~~~iDiv~~sm~~alas~--GgFc~G~~~i~~hQrLSg~~Y~f-SAslPp~la~aa~~ai~i~~~~p~~~~~L~~ 363 (467)
T KOG1358|consen 287 HFGVPITDIDIVTASMETALASG--GGFCAGKSFIADHQRLSGSGYCF-SASLPPYLAGAAIKAILIEEWNPEIVQPLRA 363 (467)
T ss_pred cCCCCccceeeeeeccccccccc--CceeecceeeEeeeeccccceee-eccCchhhhhhHHHHHHHHhhCcchhhhhhc
Confidence 77765 35554 44566631 23334433332222211223333 445566777777778877766 677777888
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------- 382 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------- 382 (411)
....+...|+... ++...-.....++-+.+.....+- ..+....+++.+.+..+|+.+....
T Consensus 364 k~~~~H~~l~~~s---~~~v~~~~~SPi~hl~l~~~~~s~-----e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~ 435 (467)
T KOG1358|consen 364 KVAKFHAALSSNS---GFIVSGSPESPIIHLQLERSYGSR-----EKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPI 435 (467)
T ss_pred cccccchhhhcCC---ceEEecCcCCceeeeeecccccch-----HHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCC
Confidence 7777777776531 111111223444444443321110 1222345677777777788886652
Q ss_pred Ccceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 383 FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+|+ +..+++++++++.+.|++....
T Consensus 436 ~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 436 PPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 123444 6888999999999999987654
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=154.72 Aligned_cols=303 Identities=14% Similarity=0.063 Sum_probs=180.6
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCCC--C-------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc--cC
Q 015230 50 IGHADDQVLAALGETMKKGTSFGA--P-------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TG 117 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~~~~~--~-------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~--~~ 117 (411)
.+..++.+++++.+.+........ . .+..+++.+++++.++ .+++++|++|+++++..+++..... .+
T Consensus 7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~ 86 (353)
T TIGR03235 7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQK 86 (353)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 344788999999998865221111 1 1335678888888887 6789999999999999988754322 12
Q ss_pred C-cEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 118 R-ERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 118 ~-~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
+ +.|++....++........+ .|..+..++......+ |++++++.++ +++++++++.+++
T Consensus 87 g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~--------------d~~~l~~~l~---~~~~lv~~~~~~n 149 (353)
T TIGR03235 87 GKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRI--------------DVDELADAIR---PDTLLVSIMHVNN 149 (353)
T ss_pred CCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcC--------------CHHHHHHhCC---CCCEEEEEEcccC
Confidence 3 45555554444332222222 2333333332211111 7899988886 3568888888888
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchh--hhhhhccCCcccccccccHHHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~ 271 (411)
++|.+.+ +++|.++|++||+++++|++|+ .|. .+..+.+ .+|++ +..|+++. ..+|+++.+++....
T Consensus 150 ~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~---~g~~~~~~~~~--~~D~~~~s~~K~~gp-~g~g~l~~~~~~~~~ 219 (353)
T TIGR03235 150 ETGSIQP----IREIAEVLEAHEAFFHVDAAQV---VGKITVDLSAD--RIDLISCSGHKIYGP-KGIGALVIRKRGKPK 219 (353)
T ss_pred CceeccC----HHHHHHHHHHcCCEEEEEchhh---cCCcccccccc--CCCEEEeehhhcCCC-CceEEEEEccCcccc
Confidence 9999998 9999999999999999999996 221 1112222 35655 55698652 127888887764322
Q ss_pred hcCCCCccc-------ccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE--E-eeecc
Q 015230 272 VAPAGPMYQ-------AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC--G-GYISG 339 (411)
Q Consensus 272 ~~~~~~~~~-------~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~-~~~g~ 339 (411)
.. ..+.+. ....+.+.....+..++++.+.. ++..++++++.+++++.|++. ++... . .....
T Consensus 220 ~~-~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~----g~~~~~~~~~~~~~ 294 (353)
T TIGR03235 220 AP-LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL----GVKLNGDPAETIPH 294 (353)
T ss_pred cc-cCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CeEEeCCcccccCC
Confidence 11 111111 11234555666666677776643 455667777777777777552 22111 1 11122
Q ss_pred eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc--------ceeeecCCCHHHHHH
Q 015230 340 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--------AGFTSLAHSSDDIQH 399 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~--------~~~~~~~~t~~~i~~ 399 (411)
++.+.+. ..+.+++.+.|.+ +|.+.++..+ .++..++.+++++..
T Consensus 295 i~~~~~~--------------~~~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~ 347 (353)
T TIGR03235 295 ILNFSID--------------GVNSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARG 347 (353)
T ss_pred EEEEEeC--------------CcCHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCc
Confidence 3444331 1223678888865 8999887432 134456666665544
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-17 Score=134.67 Aligned_cols=323 Identities=15% Similarity=0.131 Sum_probs=189.0
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
-|+.++.+..+ .+.-..+|+-.+ - .+.++.....++...+.+.-| ..|.++...|..|.++..|+..
T Consensus 39 ~G~~iv~ld~~---e~~ryPdP~q~e-------f--k~~~~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~ 106 (375)
T KOG0633|consen 39 LGRDIVKLDAN---ENPRYPDPEQME-------F--KYVYPDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCV 106 (375)
T ss_pred cCCCceEeccc---cCCCCcCHHHcc-------c--ccccCCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhhe
Confidence 46666665555 332235664421 1 233344444555555555555 7899999999999999999853
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
.-+++++|+..+|+|......+ ..-+.++...+. .+.+.. +.+.+.+.++.. +.++.+++.+.
T Consensus 107 -c~PGkeKIl~cPPtysMY~v~A-~iNd~eVvkvpl--~pdF~l------------nvdai~evl~~d-s~iK~~F~tSP 169 (375)
T KOG0633|consen 107 -CDPGKEKILDCPPTYSMYVVDA-AINDAEVVKVPL--NPDFSL------------NVDAIAEVLELD-SKIKCIFLTSP 169 (375)
T ss_pred -ecCCccceeecCCcceeEEEEe-ecCCceEEEecC--CCCccc------------cHHHHHHHHhcc-ccceEEEEcCC
Confidence 3356789999999998543322 222333333222 222211 788888888864 46776666665
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch---hhhhhhcc-CCcccccccccHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL---TTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~---~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
.|++|.+..+.+ +.+|.+.-. ++++++||+|.+| ..+.. +.+-.-.|++ -||||+|| +|+|+|+...+..
T Consensus 170 gNPtg~~ik~~d-i~KiLe~p~--nglVVvDEAYidFsg~~S~--~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ 244 (375)
T KOG0633|consen 170 GNPTGSIIKEDD-ILKILEMPD--NGLVVVDEAYIDFSGVESR--MKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLS 244 (375)
T ss_pred CCCCcccccHHH-HHHHHhCCC--CcEEEEeeeeEeecccccc--chHhHhCCceeehhhhhhhcCcceeEeecccccHH
Confidence 556666655222 555555444 7899999999988 43321 2122223443 38999999 8999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEee--ecceEEEEE
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFF 345 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~ 345 (411)
+++.+...+. +++.+..+..+|++++..- .-+-.+..+....+-+.+|-+.....+...+..+ ..+|+.+++
T Consensus 245 ia~iln~~Ka-----PYNiS~~~s~~AL~Als~~-n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v 318 (375)
T KOG0633|consen 245 IAEILNRAKA-----PYNISVAGSVAALAALSDS-NGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEV 318 (375)
T ss_pred HHHHHHhccC-----CccccchhHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEE
Confidence 9998876554 3444455555555555311 0111222333333333344333333344332222 345677777
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----cceeeecCCCHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
.+. +.+.....+.+.+...||.|+..+. +.+|+... |+|+.+.+++.|++.
T Consensus 319 ~~~----------~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG-t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 319 TGG----------DNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG-TPEENTVLMKCLKQF 374 (375)
T ss_pred cCC----------CcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC-CcccchHHHHHHHhh
Confidence 542 1223334445555667999987542 34677654 667788888888765
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=152.44 Aligned_cols=277 Identities=18% Similarity=0.181 Sum_probs=165.5
Q ss_pred HHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh----cCCCCcccCCCCCCCCC
Q 015230 81 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGLPDSPGVP 155 (411)
Q Consensus 81 l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~ 155 (411)
+.+++++.++ ..+++.+++||+++++.++... ...++++|++.++.|+. ....+.. .|..+..++.... ..
T Consensus 117 ~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~-~~~~g~~Vlv~~~~~~~-~~~~~~~~~~~~G~~~~~v~~~~~-~~- 192 (447)
T PRK00451 117 YQTMICELTGMDVANASMYDGATALAEAALMAV-RITKRKKVLVSGAVHPE-YREVLKTYLKGQGIEVVEVPYEDG-VT- 192 (447)
T ss_pred HHHHHHHHhCCCcceEEecCcHHHHHHHHHHHH-HhcCCCEEEEeCccCHH-HHHHHHHHHHhCCcEEEEecCCCC-CC-
Confidence 3366688887 6678999999999888877532 33466778887766553 3333322 3444444333211 11
Q ss_pred CCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE--ecccccccccc
Q 015230 156 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGFRLAY 233 (411)
Q Consensus 156 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~--De~~~g~~~g~ 233 (411)
|++++++.++ +++++++++.. +++|.+.+ +++|.++|+++|+++++ |.+..|+
T Consensus 193 -------------d~~~l~~~i~---~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~---- 247 (447)
T PRK00451 193 -------------DLEALEAAVD---DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL---- 247 (447)
T ss_pred -------------CHHHHHHhcC---CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc----
Confidence 8899998886 35777777665 56888887 99999999999999988 5444332
Q ss_pred CccccccCCCcchh-----hhhhhcc-CCcccccccccHHHHHHhcCC----------C-------------CcccccCC
Q 015230 234 GGAQEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPA----------G-------------PMYQAGTL 284 (411)
Q Consensus 234 ~~~~~~~~~~~d~~-----~~sK~~~-~G~~~g~~~~~~~~~~~~~~~----------~-------------~~~~~~t~ 284 (411)
......+ ..|++ ++||.+. +|+++|++++++++++.+... . ..+...+.
T Consensus 248 ~~~~~~~--~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
T PRK00451 248 LKPPGEY--GADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATS 325 (447)
T ss_pred CCCcccC--CCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccc
Confidence 1111122 33443 5677766 678899999999888875210 0 00011111
Q ss_pred C--CCHHHH-HHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEE--EEEecCCCCCcchh
Q 015230 285 S--GNPLAM-TAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG--FFFTEGPVYNFEDA 356 (411)
Q Consensus 285 ~--~~~~~~-a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~ 356 (411)
+ .+...+ .++..+++.+.+ ++..+++.++.++++++|+++ +..... ....+.. +.+.
T Consensus 326 ~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~-~~~~~~~~~v~~~---------- 390 (447)
T PRK00451 326 NICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI----GGVELF-DGPFFNEFVVRLP---------- 390 (447)
T ss_pred cccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc----CCEEec-CCCeEEEEEEecC----------
Confidence 1 111111 222223333322 566677888888888887765 322111 2122222 2221
Q ss_pred cccchHHHHHHHHHHHHcCeEecc-C---C---Ccceeeec--CCCHHHHHHHHHHHHHHH
Q 015230 357 KKSETTKFARFYRGMLEEGVYFAP-S---Q---FEAGFTSL--AHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~Gi~v~~-~---~---~~~~~~~~--~~t~~~i~~~i~~l~~~~ 408 (411)
....++.+.|.++|+.+.. + . .+.+|++. ..|+++++++++.|++++
T Consensus 391 -----~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 391 -----KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred -----CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 0126789999999887421 1 1 12456643 689999999999998765
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-16 Score=148.64 Aligned_cols=316 Identities=17% Similarity=0.137 Sum_probs=184.3
Q ss_pred CcHHHHHHHHHHHHcCC--C-----C-C---CCCHHHHHHHHHHHhhCCCCCEE-EEeCChHHHHHHHHHHHHhc-----
Q 015230 53 ADDQVLAALGETMKKGT--S-----F-G---APCLLENVLAEMVISAVPSIEMV-RFVNSGTEACMGVLRLARAF----- 115 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~--~-----~-~---~~~~~~~~l~~~l~~~~~~~~~v-~~~~~g~~a~~~al~~~~~~----- 115 (411)
.+|.+++++...+.+-- + | + +.++.+....++..+.++ .+.+ +-..||+.|+.+++......
T Consensus 61 ~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~-a~~anvqp~Sg~~An~~v~~all~~~~~~p 139 (493)
T PRK13580 61 SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG-AEHAYVQPHSGADANLVAFWAILAHKVESP 139 (493)
T ss_pred CCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC-CCcccccCCCcHHHHHHHHHHHhcccccCc
Confidence 57778887777766611 1 1 1 124555555666666775 3322 34458999999988754321
Q ss_pred ----c--------------------CCcEEEEEeCCcCCCchhh--hhhcCC--CCcccCCCCCCCCCCCCCCceeecCC
Q 015230 116 ----T--------------------GRERIIKFEGCYHGHADPF--LVKAGS--GVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 116 ----~--------------------~~~~vi~~~~~~~~~~~~~--~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
. ++++|+..+...-|+..-. ....+. .....++....+.
T Consensus 140 ~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~------------- 206 (493)
T PRK13580 140 ALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGL------------- 206 (493)
T ss_pred chhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCc-------------
Confidence 0 1578888766554332111 001111 0111111111111
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-ccccccCccccccC-CCcc
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFG-VTPD 245 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~-~~~d 245 (411)
-|++++++.++.. ++ .+++....+.++ ..| +++|+++|++||+++++|++|+ |+..+.....+... ...|
T Consensus 207 iD~d~l~~~~~~~--~p-lvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D 278 (493)
T PRK13580 207 LDYDEIAALAREF--KP-LILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHAD 278 (493)
T ss_pred cCHHHHHHHHhhc--CC-EEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCc
Confidence 1899999998843 34 444444444444 556 9999999999999999999996 66212221100000 1245
Q ss_pred --hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Q 015230 246 --LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQG 320 (411)
Q Consensus 246 --~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~ 320 (411)
+.|++|++.|. +.|++++++++++.+....+...+ + ..++ ..++...++..+.. ++.++++.++.+++++.
T Consensus 279 ~vtgT~hKaL~GP-~GG~I~~~~~l~~~L~~a~P~i~g-g-~l~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~ 354 (493)
T PRK13580 279 IVTTTTHKTLRGP-RGGLVLAKKEYADAVDKGCPLVLG-G-PLPH-VMAAKAVALAEARTPEFQKYAQQVVDNARALAEG 354 (493)
T ss_pred EEEeCChhhccCC-CeEEEEecHHHHHHHhhCCCcccC-C-CccH-HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 45889999641 356778899988888644443333 2 2233 33333334444433 34788999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------cceeee-
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTS- 389 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----------~~~~~~- 389 (411)
|++.+.. ... ......++.+++.+ .......+.+.|.+.||++.+... ..+|+.
T Consensus 355 L~~~G~~--vv~-ggTdshIV~V~lg~------------~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~ 419 (493)
T PRK13580 355 FLKRGAR--LVT-GGTDNHLVLIDVTS------------FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGT 419 (493)
T ss_pred HHhcCCC--ccC-CCCCCCEEEEEeCC------------HHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEecc
Confidence 9887321 111 01235677887743 122335677899999999975432 235663
Q ss_pred -c----CCCHHHHHHHHHHHHHHHH
Q 015230 390 -L----AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 390 -~----~~t~~~i~~~i~~l~~~~~ 409 (411)
. .++++|++++.+.|.++++
T Consensus 420 ~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 420 PALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHH
Confidence 3 5579999999999998875
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-17 Score=151.45 Aligned_cols=299 Identities=15% Similarity=0.090 Sum_probs=182.3
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh
Q 015230 59 AALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 138 (411)
Q Consensus 59 ~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 138 (411)
+++.+.+..... +......++.+.+++.++ .+++++++||++|+..+++.+ ...+++.|++...+|++.... ...
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~-~~~~~~~~sgt~al~~~l~~l-~~~~gd~vl~~~~~~~~~~~~-~~~ 77 (352)
T cd00616 3 EAVEEVLDSGWL--TLGPKVREFEKAFAEYLG-VKYAVAVSSGTAALHLALRAL-GIGPGDEVIVPSFTFVATANA-ILL 77 (352)
T ss_pred HHHHHHHHcCCc--cCCHHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHHc-CCCCCCEEEeCCcchHHHHHH-HHH
Confidence 566677776432 334566778888888775 568899999999999999754 234567899988888865433 333
Q ss_pred cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCC
Q 015230 139 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 218 (411)
Q Consensus 139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~ 218 (411)
.|..+...+....... .|++++++.++ +++++|++++ ..|...+ +++|.++|++||+
T Consensus 78 ~g~~~~~~~~~~~~~~-------------~d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~~i 134 (352)
T cd00616 78 LGATPVFVDIDPDTYN-------------IDPELIEAAIT---PRTKAIIPVH---LYGNPAD----MDAIMAIAKRHGL 134 (352)
T ss_pred cCCeEEEEecCCCcCC-------------cCHHHHHHhcC---cCCeEEEEEC---CCCCcCC----HHHHHHHHHHcCC
Confidence 4444444332211110 17889988875 3567777653 3577767 9999999999999
Q ss_pred EEEEecccc-cc-ccccCccccccCCCcchh--hhh--hhccCCccccccccc-HHHHHHhcCC---CCc---------c
Q 015230 219 LLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMVAPA---GPM---------Y 279 (411)
Q Consensus 219 ~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~s--K~~~~G~~~g~~~~~-~~~~~~~~~~---~~~---------~ 279 (411)
++|+|++|+ |. ..+. ..+...|+. |++ |++++| +.|+++.+ +++.+.+... ... .
T Consensus 135 ~li~D~a~~~g~~~~~~-----~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (352)
T cd00616 135 PVIEDAAQALGATYKGR-----KVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEI 208 (352)
T ss_pred eEEEECCCCCCCeECCE-----EcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccce
Confidence 999999997 32 1111 112223444 444 999533 46667654 5666654321 000 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eecceEEEEEecCCCCCcchh
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDA 356 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~ 356 (411)
.+.++..+++.++.+...++.+ ++..++.+++.+++++.|+++. ......... ....++.+.+...
T Consensus 209 ~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 277 (352)
T cd00616 209 LGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLP-GIRLPDVPPGVKHSYHLYVIRLDPE-------- 277 (352)
T ss_pred eeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCceeeEEEEEEECCc--------
Confidence 1123355667777666655544 4566777888888888887641 111111111 1234555555320
Q ss_pred cccchHHHHHHHHHHHHcCeEeccCCC---------------------------cceeee--cCCCHHHHHHHHHHHH
Q 015230 357 KKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAE 405 (411)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~~--~~~t~~~i~~~i~~l~ 405 (411)
......++.+.|.++||.+..... ..+++| ...|++|++.++++|+
T Consensus 278 ---~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 278 ---AGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred ---CCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 012236899999999997653211 135664 5579999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-17 Score=151.21 Aligned_cols=234 Identities=14% Similarity=0.064 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++.+.+++..+ .+++++++||+.|+..++... ..+++.|++....|.+.+.......
T Consensus 68 ~~p~~~~le~~lA~l~g-~~~al~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~~~~t~~~~~~~~-------------- 130 (403)
T PRK07810 68 GNPTVSMFEERLRLIEG-AEACFATASGMSAVFTALGAL--LGAGDRLVAARSLFGSCFVVCNEIL-------------- 130 (403)
T ss_pred CCchHHHHHHHHHHHhC-CCcEEEECChHHHHHHHHHHH--hCCCCEEEEccCCcchHHHHHHHHH--------------
Confidence 45556788888888885 558888899999999988643 3466777777655544332211110
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-ccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 232 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g 232 (411)
...+..+..++..|+++++++++ +++++|++|.++|++|.+.+ +++|.++|+++|+++|+|++|+ ++...
T Consensus 131 --~~~G~~v~~vd~~d~~~l~~ai~---~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~~~~~ 201 (403)
T PRK07810 131 --PRWGVETVFVDGEDLSQWEEALS---VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATPLLQR 201 (403)
T ss_pred --HHcCcEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 01122444555568999999886 35788999988888898888 9999999999999999999996 22111
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHH-HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
. . .++.+.-+.+++|.++| |.++ |+++++++.+. .++. .........+++.++.+...++.+ +...++
T Consensus 202 ~---~-~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~---~~~~~g~~~s~~~a~l~l~~L~tl--~~R~~~ 272 (403)
T PRK07810 202 G---L-PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---LMRHTGPALSAFNAWVLLKGLETL--ALRVRH 272 (403)
T ss_pred h---h-hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccCcH--HHHHHH
Confidence 1 1 12333334578999986 7776 66777776554 2331 111123356778777777766644 444566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceE------------------EeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~ 346 (411)
..++..++.+.|++. |.+.. ..+.|.++.|++.
T Consensus 273 ~~~~a~~~a~~L~~~----p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~ 323 (403)
T PRK07810 273 SNASALRIAEFLEGH----PAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD 323 (403)
T ss_pred HHHHHHHHHHHHhcC----CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 677777777777654 22111 1256889999985
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=154.46 Aligned_cols=265 Identities=13% Similarity=0.054 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
+..-..+|.+.+++.++ .+.+++++||+.|+..++.. ...+++.|++..+.|...........
T Consensus 62 ~~p~~~~Le~~iA~~~g-~~~~l~~~sG~~Ai~~al~~--ll~~Gd~Vl~~~~~y~~~~~~~~~~~-------------- 124 (400)
T PRK06234 62 GNPTSTEVENKLALLEG-GEAAVVAASGMGAISSSLWS--ALKAGDHVVASDTLYGCTFALLNHGL-------------- 124 (400)
T ss_pred CCccHHHHHHHHHHHhC-CCcEEEEcCHHHHHHHHHHH--HhCCCCEEEEecCccchHHHHHHHHH--------------
Confidence 35556788888888885 35688899999999888763 24566778887776654332211100
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh--CCEEEEecccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRL 231 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~~~ 231 (411)
...+.++..++..|++++++.++ +++++|+++.++|++|.+.+ +++|.++|+++ ++++|+||+|+....
T Consensus 125 --~~~G~~v~~vd~~d~e~l~~~i~---~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~~~ 195 (400)
T PRK06234 125 --TRYGVEVTFVDTSNLEEVRNALK---ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTPYI 195 (400)
T ss_pred --hhCCeEEEEECCCCHHHHHHHhc---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCchhc
Confidence 01122344555568999998886 35778888888888898888 99999999997 999999999973211
Q ss_pred ccCccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
+... .++.+.-+.|+||.+++ |.++ ||+++++++++.++..... .......++..++.+...++.+ +...++
T Consensus 196 ~~~l---~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~-~~~g~~l~p~~a~l~~~~l~tl--~~r~~~ 269 (400)
T PRK06234 196 QRPL---QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK-DMTGSVIGPFEAFLIIRGMKTL--QIRMEK 269 (400)
T ss_pred CCch---hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHhccCcH--HHHHHH
Confidence 1111 11223334589999986 7664 8888998888877531111 1113456777777776665433 345566
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 310 LNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
..++..++.+.|++... .+|. .. ...+.|.++.|++.. ....+.++.+.|.--+
T Consensus 270 ~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~------------~~~~~~~f~~~l~~~~ 337 (400)
T PRK06234 270 HCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG------------GVEEGKVVMNNVKLAT 337 (400)
T ss_pred HHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC------------cHHHHHHHHHhCCcce
Confidence 66777777777765310 0110 00 123457788888842 1233466777776656
Q ss_pred eEeccCC
Q 015230 376 VYFAPSQ 382 (411)
Q Consensus 376 i~v~~~~ 382 (411)
+-++.|+
T Consensus 338 ~~~s~G~ 344 (400)
T PRK06234 338 LAVSLGD 344 (400)
T ss_pred EeccCCC
Confidence 5555553
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=153.55 Aligned_cols=238 Identities=15% Similarity=0.114 Sum_probs=151.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+......++.+.+++..+ .+.+++++||++|+..+++.. ..++++|++..+.|.+. .......
T Consensus 51 ~~~p~~~~le~~la~l~g-~~~~~~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~~~~~t-~~~~~~~------------- 113 (380)
T TIGR01325 51 YANPTVAAFEERIAALEG-AERAVATATGMSAIQAALMTL--LQAGDHVVASRSLFGST-VGFISEI------------- 113 (380)
T ss_pred CCCchHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEecCCcchH-HHHHHHH-------------
Confidence 345567888888888774 467888999999999999743 34567777765554432 2211100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
....+..+..++.+|++++++.++ +++++|+++.++|+.|...+ +++|.++|+++|+++|+|++|+.....
T Consensus 114 --~~~~g~~v~~v~~~d~~~l~~~i~---~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~~~~ 184 (380)
T TIGR01325 114 --LPRFGIEVSFVDPTDLNAWEAAVK---PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATPVLQ 184 (380)
T ss_pred --HHHhCCEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 000112344555568888888775 35788888888888888888 999999999999999999999732011
Q ss_pred cCccccccCCCcchh--hhhhhccC-Cccc-ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 233 YGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~--~~sK~~~~-G~~~-g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
......+|++ |++|.++| |.++ |++++++++++.+.... .......++..++.+...++.+. ...+
T Consensus 185 -----~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~---~~~g~~~~p~~a~~~l~~l~tl~--~r~~ 254 (380)
T TIGR01325 185 -----QPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYL---RHTGPAMSPFNAWVLLKGLETLS--LRMQ 254 (380)
T ss_pred -----CchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHH---HhhCCCCCHHHHHHHHhccCcHH--HHHH
Confidence 1112234554 79999996 6665 66778888777765311 11122345565555555554443 3456
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEe
Q 015230 309 YLNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 346 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~ 346 (411)
+..++..++.+.|++... .+|. .. ...+.|.++.|++.
T Consensus 255 ~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 255 KQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 677777777777776420 0121 11 12356889999984
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=150.15 Aligned_cols=233 Identities=18% Similarity=0.121 Sum_probs=149.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.+.....+.+.+++..+. +..++++||++|+..++. ...++++|++.++.|++.........
T Consensus 49 ~~~pt~~~le~~la~l~g~-~~~~~~~sG~~ai~~~~~---ll~~Gd~Vl~~~~~y~~t~~~~~~~~------------- 111 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGG-DQGFACSSGMAAIQLVMS---LFRSGDELIVSSDLYGGTYRLFEEHW------------- 111 (366)
T ss_pred CCCchHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHH---HhCCCCEEEEecCCcCcHHHHHHHHh-------------
Confidence 3455678888888888854 445888899999987664 34567889999999987433221110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~ 231 (411)
...+..+..++..|+++++++++. ++++|+++.++|+.+...+ +++|.++|++||+++|+||+|. ++.
T Consensus 112 ---~~~G~~v~~vd~~d~~~l~~~i~~---~tklv~le~P~NP~~~~~d----l~~I~~la~~~g~~lIvD~t~~~~~~- 180 (366)
T PRK08247 112 ---KKWNVRFVYVNTASLKAIEQAITP---NTKAIFIETPTNPLMQETD----IAAIAKIAKKHGLLLIVDNTFYTPVL- 180 (366)
T ss_pred ---hccCceEEEECCCCHHHHHHhccc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 011223445555589999988863 5678777666666666555 9999999999999999999995 221
Q ss_pred ccCccccccCCCcchhhhhhhccC--Cccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
.... ..+.+.-+.|+||.++| +++.|+++++ +++.+.+... ........+++.+..+...++.+ +...+
T Consensus 181 ~~p~---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~---~~~~g~~~s~~~a~l~~~~l~tl--~~r~~ 252 (366)
T PRK08247 181 QRPL---EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY---QNAAGAVLSPFDSWLLIRGMKTL--ALRMR 252 (366)
T ss_pred cCch---hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH---HHhcCCCCChHHHHHHHhccCcH--HHHHH
Confidence 1111 12333345689999985 3678988876 6666665421 11223445667666666655433 23344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceE--EeeecceEEEEE
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFF 345 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~~~~ 345 (411)
+.+++...+.+.|++. +.+.. .++.|.++.|++
T Consensus 253 ~~~~~a~~l~~~L~~~----p~v~~v~~P~~gg~~sf~~ 287 (366)
T PRK08247 253 QHEENAKAIAAFLNEQ----PGVTDVLYPGRGGMLSFRL 287 (366)
T ss_pred HHHHHHHHHHHHHHhC----CCeeEEecCCcCcEEEEEE
Confidence 5677777777777654 43322 233577778877
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=150.84 Aligned_cols=238 Identities=16% Similarity=0.117 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
....+++.+.+++.++ .+++++++||++|+..++... ..+++.||+..+.|.+.........
T Consensus 60 ~p~~~~le~~la~l~g-~~~~v~~ssG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~t~~~~~~~~--------------- 121 (390)
T PRK08133 60 NPTVTMFQERLAALEG-AEACVATASGMAAILAVVMAL--LQAGDHVVSSRSLFGSTVSLFEKIF--------------- 121 (390)
T ss_pred ChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCcchhHHHHHHHHH---------------
Confidence 5556788888888874 567889999999999988743 3456788887777665332211110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
...+..+..++.+|++++++.++ +++++|+++.++|+.|.+.+ +++|.++|++||+++|+|++++.......
T Consensus 122 -~~~G~~v~~vd~~d~~~l~~~i~---~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~~~~~p 193 (390)
T PRK08133 122 -ARFGIETTFVDLTDLDAWRAAVR---PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTPALQQP 193 (390)
T ss_pred -HHcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 00122445555568899988886 36788888888888898888 99999999999999999999962211111
Q ss_pred ccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
. .++.+.-+.|+||.+++ |.++ |+++++++.++.+.. .........++..+..++..++.+ ....++..+
T Consensus 194 --l-~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~---~~~~~g~~~~~~~a~~~l~gl~tl--~~R~~~~~~ 265 (390)
T PRK08133 194 --L-KLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFG---FLRTAGPTLSPFNAWVFLKGLETL--SLRMEAHSA 265 (390)
T ss_pred --h-hhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHH---HHHHhCCCCCHHHHHHHHcccchH--HHHHHHHHH
Confidence 1 12322224589999986 7777 556777777665542 111223345566655555444432 333345556
Q ss_pred HHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEe
Q 015230 313 ITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 346 (411)
Q Consensus 313 ~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~ 346 (411)
+...+.+.|++... .+|. .. ...+.|.++.|++.
T Consensus 266 ~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 266 NALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred HHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 66666666665410 0111 00 12356889999984
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-17 Score=151.44 Aligned_cols=240 Identities=14% Similarity=0.076 Sum_probs=152.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+......++.+.+++..+ .+..+.+++|+.|+..++.. ...++++|++..+.|.+..........
T Consensus 62 ~~~p~~~~Le~~lA~l~G-~~~~~~~~sG~~Ai~~~l~~--~l~~Gd~Vl~~~~~y~~~~~~~~~~~~------------ 126 (398)
T PRK07504 62 YSNPTVDMFEKRMCALEG-AEDARATASGMAAVTAAILC--QVKAGDHVVAARALFGSCRYVVETLLP------------ 126 (398)
T ss_pred CCCchHHHHHHHHHHHhC-CCeeeEecCHHHHHHHHHHH--HhCCCCEEEEcCCchhHHHHHHHHHHh------------
Confidence 345567888888888885 44455678999999877753 345668888888877764322211100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
..+.++..++..|+++++++++ +++++|+++.++|++|.+.+ +++|.++|+++|+++|+|++|+.....
T Consensus 127 ----~~G~~v~~vd~~d~e~l~~ai~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~~~~ 195 (398)
T PRK07504 127 ----RYGIESTLVDGLDLDNWEKAVR---PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATPLFQ 195 (398)
T ss_pred ----hcCeEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccccccC
Confidence 0112233334448899988886 36788888888888898888 999999999999999999999722011
Q ss_pred cCccccccCCCcchhhhhhhccC-Ccccc-cccccHHHHHH-hcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-GLPVG-AYGGRRDIMEM-VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G~~~g-~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.. . .++.+.-+.|++|++++ |+++| +++++++.++. +.. .........+++.++.++..++.+ +...++
T Consensus 196 ~~--~-~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~---~~~~~g~~~s~~~A~~~l~~L~tl--~~R~~~ 267 (398)
T PRK07504 196 KP--L-ELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD---YFRHTGPSLSPFNAWTLLKGLETL--PVRVRQ 267 (398)
T ss_pred Cc--h-hhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccchH--HHHHHH
Confidence 11 1 12333334578999985 88886 55667665542 321 111123456777777777777655 334555
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~ 346 (411)
..++...+.+.|++... .||. .. ..++.|.++.|++.
T Consensus 268 ~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~ 318 (398)
T PRK07504 268 QTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK 318 (398)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence 66777777777765410 1111 11 12345889999984
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=149.26 Aligned_cols=240 Identities=15% Similarity=0.130 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.....+++.+.+++..+ .+.+++++||++|+..++... ..+++.|++..+.|++.........
T Consensus 61 ~~~p~~~~le~~lA~l~g-~~~~i~~ssG~~Ai~~~l~al--l~~GD~Vi~~~~~y~~~~~~~~~~~------------- 124 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEG-AEAATAFSTGMAAISNTLYTF--LKPGDRVVSIKDTYGGTNKIFTEFL------------- 124 (398)
T ss_pred CCChHHHHHHHHHHHHhC-CCeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCchHHHHHHHHHHH-------------
Confidence 346667888888888875 456788888999999888642 4467889999988876322111100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
...+.++..++..|+++++++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+.+...
T Consensus 125 ---~~~Gi~v~~vd~~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~~~~ 194 (398)
T PRK08249 125 ---PRMGVDVTLCETGDHEQIEAEIA---KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATPINQ 194 (398)
T ss_pred ---hhCCeEEEEcCCCCHHHHHHhcC---CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCccccC
Confidence 00112233344458999998886 35788888877788899988 999999999999999999999733111
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
.. . .++.+.-+.|++|.++| |.++ |++++++++++.+.... .......++..++.+...++.+. ...++.
T Consensus 195 ~~--l-~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~---~~~g~~~s~~~a~l~l~~l~tL~--~R~~~~ 266 (398)
T PRK08249 195 NP--L-ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYR---EINGATMDPMSAYLILRGMKTLK--LRVRQQ 266 (398)
T ss_pred Cc--h-hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhCcchHH--HHHHHH
Confidence 11 1 12333335589999986 5565 66678888887775322 22245667777777777666553 344666
Q ss_pred HHHHHHHHHHHHHHHH----hcCCc-e---------EEeeecceEEEEEe
Q 015230 311 NKITGELTQGIIDAGK----KAGHA-I---------CGGYISGMFGFFFT 346 (411)
Q Consensus 311 ~~~~~~~~~~l~~~~~----~~~~~-~---------~~~~~g~~~~~~~~ 346 (411)
.++...+.+.|++... .||.. . ...+.|.++.|++.
T Consensus 267 ~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~ 316 (398)
T PRK08249 267 QESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK 316 (398)
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc
Confidence 7777777777775310 11111 0 12356889999884
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=144.12 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=142.9
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC------CCCC-CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS------FGAP-CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~------~~~~-~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
..|+|..+. .+ .+|.|.+++.+.+..... |++- ....++.++.+++..+ ++.+|+||+++||++.+
T Consensus 44 ~vyld~~at---~p---~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl 117 (428)
T KOG1549|consen 44 PVYLDNQAT---GP---MDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL 117 (428)
T ss_pred cEEEecCcC---CC---CCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence 456776555 33 789999999998888422 1111 2225677777888887 66679999999999999
Q ss_pred HHHHHHh-ccC-Cc-EEEEEeCCcCCCchhhhhhc--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 108 VLRLARA-FTG-RE-RIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 108 al~~~~~-~~~-~~-~vi~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+++.... +.. .. .||.+...|.....+...+. |..+.+++++ ..+.. |.+.+++.++ .
T Consensus 118 vl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~~~~-------------d~~~~~~~i~---~ 180 (428)
T KOG1549|consen 118 VLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE-DSGLV-------------DISKLREAIR---S 180 (428)
T ss_pred HHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC-ccccc-------------cHHHHHHhcC---C
Confidence 9975422 221 22 66777666666666555443 3334444444 33333 8899999888 5
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhh--hhccC-Cccc
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGG-GLPV 259 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s--K~~~~-G~~~ 259 (411)
++++|.+..++++.|+..| +++|.++|+++++.+++|.+|+ .|. ...|.-.+.+|+.++| |++++ | +
T Consensus 181 ~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa---vG~-i~vDV~eln~D~~s~s~HK~ygp~~--i 250 (428)
T KOG1549|consen 181 KTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA---VGK-IPVDVQELNADFLSISAHKIYGPPG--I 250 (428)
T ss_pred CceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh---cCC-ccccHHHcCchheeeecccccCCCc--c
Confidence 8999999999999999999 9999999999999999999997 443 2345555677877554 99985 4 9
Q ss_pred ccccccH
Q 015230 260 GAYGGRR 266 (411)
Q Consensus 260 g~~~~~~ 266 (411)
|++++++
T Consensus 251 GaLYvr~ 257 (428)
T KOG1549|consen 251 GALYVRR 257 (428)
T ss_pred eEEEEcc
Confidence 9998875
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=149.15 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=156.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.+....++.+.+++..+ .+++++++||++|+..++... ..+++.|++..+.|.+.........+...
T Consensus 48 ~~~p~~~~le~~lA~l~g-~~~v~~~~gg~~Ai~~~l~al--l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~--------- 115 (382)
T TIGR02080 48 SGNPTRDLLQQALAELEG-GAGAVVTNTGMSAIHLVTTAL--LGPDDLLVAPHDCYGGTYRLLNALAKKGC--------- 115 (382)
T ss_pred CCCchHHHHHHHHHHHhC-CCcEEEEcCHHHHHHHHHHHH--cCCCCEEEEcCCCcHHHHHHHHHHHhhcC---------
Confidence 456667888888888885 578999999999999988753 45678888888988764433222222110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~ 231 (411)
..+..++..|+++++++++ +++++|+++..+|++|...+ +++|.++|+++|+++|+|++|+.+ ..
T Consensus 116 -------~~v~~~d~~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~ 181 (382)
T TIGR02080 116 -------FRVLFVDQGDEQALRAALA---QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPALQ 181 (382)
T ss_pred -------eEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 0122222237888888886 35778888877788888888 999999999999999999999732 11
Q ss_pred ccCccccccCCCcchhhhhhhccC--Ccccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
.. . ..+.+.-+.|++|.++| +++.|+++. ++++++.+.... .......+++.+..++..++.+. ...+
T Consensus 182 ~p---l-~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~---~~~g~~~sp~~a~l~lr~l~tl~--~R~~ 252 (382)
T TIGR02080 182 NP---L-ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA---NNLGVTGGAFDSYLTLRGLRTLV--ARMR 252 (382)
T ss_pred Cc---h-hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH---HccCCCCCHHHHHHHHcccchHH--HHHH
Confidence 11 1 12332334589999975 578998855 677776665211 22244567888777766665443 2255
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEe
Q 015230 309 YLNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 346 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~ 346 (411)
+..++...+.+.|++... .||. .. ...+.|.++.|++.
T Consensus 253 ~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 304 (382)
T TIGR02080 253 LQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK 304 (382)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence 666777777777765310 1111 00 12356889999984
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=149.56 Aligned_cols=241 Identities=13% Similarity=0.050 Sum_probs=153.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
......++.+.+++..+ .+..++++||+.|+..++... ..+++.|++..+.|.+..........
T Consensus 57 ~~p~~~~le~~lA~l~g-~~~av~~~sG~~Ai~~~l~al--~~~Gd~Vi~~~~~y~~t~~~~~~~~~------------- 120 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLEG-TEAAVATSSGMGAIAATLLTI--LKAGDHLISDECLYGCTFALLEHALT------------- 120 (391)
T ss_pred CCchHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEecCcchHHHHHHHHHHh-------------
Confidence 45556788888888885 455788899999999888643 34667788877766543322211110
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
..+..+..++.+|++++++.++ +++++|++|.++|+.|.+.+ +++|.++|+++|+++|+|++|+....+.
T Consensus 121 ---~~G~~~~~vd~~d~e~l~~~i~---~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~~~~~~ 190 (391)
T TIGR01328 121 ---KFGIQVDFINMAIPEEVKAHIK---DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFATPMLTN 190 (391)
T ss_pred ---cCCeEEEEECCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCchhccCC
Confidence 1123344555568888888876 35778888888888888888 9999999999999999999996211111
Q ss_pred CccccccCCCcchhhhhhhccC-Ccc-cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G~~-~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
.. ..+.+.-+.|++|.+++ |.+ .|++++++++++.++........ ....++..++.+...++.+ +...++.+
T Consensus 191 ~~---~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~-g~~l~~~~a~l~l~~L~tl--~~r~~~~~ 264 (391)
T TIGR01328 191 PV---ALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT-GSVISPFDAWLILRGLKTL--NIRMKRHS 264 (391)
T ss_pred ch---hcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCC-CCCCCcHHHHHHHhCcCcH--HHHHHHHH
Confidence 11 11222234588999985 766 46678888888777631111111 2344666666666555433 33456677
Q ss_pred HHHHHHHHHHHHHHH----hcCC-c---------eEEeeecceEEEEEe
Q 015230 312 KITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFT 346 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~----~~~~-~---------~~~~~~g~~~~~~~~ 346 (411)
++..++.+.|++... .+|. . ...++.|.++.|++.
T Consensus 265 ~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 265 ENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred HHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 778888888776420 1111 0 012345788999884
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=141.49 Aligned_cols=289 Identities=15% Similarity=0.079 Sum_probs=182.2
Q ss_pred CHHHHHHHHHHHhhCC-CCCE--EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC
Q 015230 75 CLLENVLAEMVISAVP-SIEM--VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 151 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~~~~--v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 151 (411)
.+.++++.+++++.++ ..++ .+||+||||++..++..++...+++.|++.+..++ ....++...|.+...++...
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~-Sv~ka~~~lg~~~~~V~~~~- 141 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHY-SVSKIARLLRIKSRVITSLP- 141 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCcee-hHHHHHHHcCCCCceeccCC-
Confidence 4567789999999997 3344 48999999999999887766545555555544444 45555555555444433321
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC---CEEEEeccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG---ALLIFDEVMTG 228 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~---~~li~De~~~g 228 (411)
.+.. |+++|++.+++...++.+|++...+++.|.+.| +++|.++|++|| +++++|.+|++
T Consensus 142 ~g~i-------------d~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg 204 (380)
T PRK02769 142 NGEI-------------DYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSG 204 (380)
T ss_pred CCcC-------------cHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccc
Confidence 1111 899999999865446888999999999999999 999999999998 69999999986
Q ss_pred c-ccc--cCccccccCCCcchhhh--hhhccCCcccccccccHHHHHHhcCCCCcccc--cCC--CCCHHHHHHHHHHHH
Q 015230 229 F-RLA--YGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQA--GTL--SGNPLAMTAGIHTLK 299 (411)
Q Consensus 229 ~-~~g--~~~~~~~~~~~~d~~~~--sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~--~t~--~~~~~~~a~~~~~l~ 299 (411)
+ ..- ....++... ..|.+++ -|.+++..++|.++.+++..+.+.....+... .++ +.+..+.++..++++
T Consensus 205 ~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~ 283 (380)
T PRK02769 205 MILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIR 283 (380)
T ss_pred eeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHH
Confidence 5 211 100111111 4565544 48777556689888888776665421111110 111 223344555556666
Q ss_pred HHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe
Q 015230 300 RLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 376 (411)
Q Consensus 300 ~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 376 (411)
.+.. ++..++..++.+++.++|++. ++..-..+....+.|.. +. ..+. +|-
T Consensus 284 ~lg~~G~~~~~~~~~~la~~l~~~L~~~----g~~~~~~p~~~~v~f~~-------------~~----~~~~-----~~w 337 (380)
T PRK02769 284 SLGSKGLRQRVQHCLDMAQYAVDRLQAN----GIPAWRNPNSITVVFPC-------------PS----ERIW-----KKW 337 (380)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEEEcCCCceEEEEcC-------------CC----HHHH-----hCe
Confidence 5544 666778888888888888764 33222223344444422 11 1121 455
Q ss_pred EeccCCC-cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 377 YFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 377 ~v~~~~~-~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+.+... -++++...+|++.+|.+++-|.+.+.
T Consensus 338 ~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 338 HLATSGNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred eEcccCCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 5555432 23455678899999999999987654
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=148.09 Aligned_cols=289 Identities=10% Similarity=0.038 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.....+.+.+++.. +.+++++++||++|+..++... ..+++.|++.++.|++...........
T Consensus 49 nPt~~~lE~~lA~l~-g~~~~~~~~sG~~Ai~~al~al--l~~GD~Vl~~~~~y~~t~~~~~~~~~~------------- 112 (377)
T TIGR01324 49 TLTHFALQDAMCELE-GGAGCYLYPSGLAAVTNSILAF--VKAGDHVLMVDSAYEPTRYFCDIVLKR------------- 112 (377)
T ss_pred CccHHHHHHHHHHHh-CCCcEEEECcHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHHHHHHh-------------
Confidence 334567777777766 4568899999999999998743 456788888888887643211100000
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
.+.++..++..+.+.+++.++ +++++|++|.+.|+.|...+ +++|.++|++||+++|+|++|+ .|..
T Consensus 113 ---~gi~v~~~d~~~~e~l~~~i~---~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a---~g~~ 179 (377)
T TIGR01324 113 ---MGVDITYYDPLIGEDIATLIQ---PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA---AGLL 179 (377)
T ss_pred ---cCcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc---cccc
Confidence 011223333334477777775 46889999988888888887 9999999999999999999997 2211
Q ss_pred ccccccCCCcchhhhhhhccC--CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
+....+|.+.-+.|++|+++| +.-.|+++++++.++.+... ........+|..+......++.+ ....++..+
T Consensus 180 ~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~---~~~~G~~l~p~~a~~~~rgl~tl--~~R~~~~~~ 254 (377)
T TIGR01324 180 FKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREH---SYLMGQMVDADDAYTTLRGLRTL--GVRLKQHQE 254 (377)
T ss_pred cCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHH---HHHhCCCCCHHHHHHHHhhhhhH--HHHHHHHHH
Confidence 111123333334478999985 35678888888777766521 11223445666666666665543 233566666
Q ss_pred HHHHHHHHHHHHHH----hcCC-c---------eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe
Q 015230 313 ITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 378 (411)
Q Consensus 313 ~~~~~~~~l~~~~~----~~~~-~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 378 (411)
++..+.+.|++... .+|. . ....+.|.++.|++.+. ....+.++.+.|+-.++-+
T Consensus 255 ~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~-----------~~~~~~~~~~~l~~~~~~~ 323 (377)
T TIGR01324 255 SSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL-----------TQKQVHAFLDHLQLFGLGY 323 (377)
T ss_pred HHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC-----------CHHHHHHHHHhCCcceEec
Confidence 66667777766410 0111 0 01235688889988421 2344567777777666665
Q ss_pred ccCCCcc-----------------------eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 379 APSQFEA-----------------------GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 379 ~~~~~~~-----------------------~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+-|+... +|++. --|+.+.+++-|.++++.
T Consensus 324 slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~sv--GlE~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 324 SWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHI--GLENVDDLKADLKAGFEA 376 (377)
T ss_pred cCCCccceeecCCCCCCHHHHHhccCCCCEEEEEe--CCCCHHHHHHHHHHHHhc
Confidence 5554322 23332 234677777777777764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-16 Score=147.00 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=155.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+++...+.+.+++++..+ .+.+++++||++|+..++.. ...+++.|++.++.|++.+............
T Consensus 49 ~~~pt~~~L~~~lA~l~g-~~~~i~~~sg~~Ai~~~l~~--l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi-------- 117 (386)
T PRK08045 49 RGNPTRDVVQRALAELEG-GAGAVLTNTGMSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY-------- 117 (386)
T ss_pred CCCccHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHH--HcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--------
Confidence 445667889999998886 45799999999999998874 2456788999889888644333222211100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
.+..++..|++++++.++ +++++|+++..+|++|.+.+ +++|.++|+++|+++|+||+|......
T Consensus 118 --------~v~~vd~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~~~~ 182 (386)
T PRK08045 118 --------RVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSPALQ 182 (386)
T ss_pred --------EEEEeCCCCHHHHHHhcc---cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 111122237888888876 35678888888888888888 999999999999999999999733011
Q ss_pred cCccccccCCCcchhhhhhhccC--Ccccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.. . .++.+.-+.|++|+++| +...|+++. ++++++.+... ........+++.+..+...++-+ +..+++
T Consensus 183 ~p--l-~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~---~~~~g~~~~p~~~~l~~rgl~tl--~~R~~~ 254 (386)
T PRK08045 183 NP--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW---ANNIGVTGGAFDSYLLLRGLRTL--VPRMEL 254 (386)
T ss_pred Cc--h-hhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHH---HHhcCCCCCHHHHHHHHhhhccH--HHHHHH
Confidence 11 1 12333334589999985 467888865 57676666421 12224456778777777776543 334566
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~ 346 (411)
..++...+.+.|++... .||. .. ...+.|.++.|++.
T Consensus 255 ~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~ 305 (386)
T PRK08045 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 305 (386)
T ss_pred HHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence 67777777777765410 0111 00 12356889999884
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=147.86 Aligned_cols=235 Identities=13% Similarity=0.116 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhh---hhhcCCCCcccCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDS 151 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~ 151 (411)
+....++.+.+++..+....+ .+++|++|+..++... ..+++.|++..+.|...+... ....|.
T Consensus 44 ~p~~~~L~~~lA~l~g~~~~v-~~~sG~~ai~~~l~al--~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~---------- 110 (376)
T PRK06460 44 NPTVLELTKKIVELENAEMGV-AFSSGMGAISTTALAL--LKPGNSVLVHRDMFGRSYRFFTDYLKNWGV---------- 110 (376)
T ss_pred CccHHHHHHHHHHHhCCCcEE-EeCCHHHHHHHHHHHH--hCCCCEEEEecCCcCcHHHHHHHHHHhhCc----------
Confidence 555677888888887644444 4467889998888642 345677888766554433221 111222
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~ 231 (411)
.+..++.++.+.+++.++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+||+|+....
T Consensus 111 ---------~v~~~~~~~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~~~ 174 (376)
T PRK06460 111 ---------NVDASNPGSDNIIEKAKS---KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTPIN 174 (376)
T ss_pred ---------EEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcccc
Confidence 233344445444544432 46788888888888899988 89999999999999999999973200
Q ss_pred ccCccccccCCCcchhhhhhhccC--CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.. .. .++.+.-+.|+||+++| +.++|++++++++++.+......+ ..+.++..+..++..++.+ +..+++
T Consensus 175 ~~--~l-~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~---g~~~~~~~a~~~l~~~~~l--~~r~~~ 246 (376)
T PRK06460 175 QK--PL-ELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTL---GTSLDPHAAYLTLRGIKTL--KIRMDV 246 (376)
T ss_pred CC--hh-hcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhc---CCCCCHHHHHHHHhchhhH--HHHHHH
Confidence 11 01 12222224589999974 367999999999888776322111 2234455444444444433 345677
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~ 346 (411)
+.++..++.+.|++... .+|. .. ...+.|.++.|++.
T Consensus 247 ~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~ 297 (376)
T PRK06460 247 INRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVN 297 (376)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 88888888888876410 0110 00 12356889999985
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-16 Score=148.21 Aligned_cols=219 Identities=18% Similarity=0.169 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhh-hcCCCCcccCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDS 151 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 151 (411)
+++.....+.+.+++.. +.+++++++||++|+..++.. ...+++.|++..+.|.+....... +...++
T Consensus 80 ~~~Pt~~~Le~~lA~le-g~~~~iv~~sG~~Ai~~~l~a--l~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi-------- 148 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYE-GAESAALFSSGMSAIATTLLA--FVRPGDVILHSQPLYGGTETLLAKTFRNFGV-------- 148 (427)
T ss_pred CCCcCHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHH--HhCCCCEEEEcCCCcccHHHHHHHHHHhcCc--------
Confidence 34555678888888888 456788899999999888864 334668889988888875433211 111111
Q ss_pred CCCCCCCCCceeec-CCCCHHHHHHHHHcC--CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH------hCCEEEE
Q 015230 152 PGVPKGATYETLTA-PFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIF 222 (411)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~--~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~------~~~~li~ 222 (411)
+++.+ ...|.+++++.+++. .+++++++++..+|++|.+.+ +++|.+++++ +++++|+
T Consensus 149 ---------~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvv 215 (427)
T PRK07049 149 ---------GAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGHRPIIAC 215 (427)
T ss_pred ---------EEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccCCCEEEE
Confidence 11111 122677887777531 236788888888888888887 6667666666 7999999
Q ss_pred ecccccc-ccccCccccccCCCcchhhhhhhccC--CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHH
Q 015230 223 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK 299 (411)
Q Consensus 223 De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~ 299 (411)
||+|.+. .... . ..+.+.-+.|+||.++| |+|+||+++++++++.+.... .....+.+++.+..+...++
T Consensus 216 Dety~~~~~~~p---l-~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~---~~~g~~ls~~~a~l~~r~L~ 288 (427)
T PRK07049 216 DNTLLGPVFQKP---L-EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALR---SAIGTQLDPHSCWMLGRSLE 288 (427)
T ss_pred ECCccccccCCc---c-ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHH---HhcCCCCCHHHHHHHHcCCC
Confidence 9998644 2111 1 12222234499999994 799999999988888776321 11234567788887777665
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 300 RLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
.+ ...+++..++...+.+.|++.
T Consensus 289 tl--~~R~~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 289 TL--VLRMERANRNARAVAEFLRDH 311 (427)
T ss_pred hH--HHHHHHHHHHHHHHHHHHHhC
Confidence 43 233455577777777777765
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-15 Score=143.87 Aligned_cols=324 Identities=15% Similarity=0.109 Sum_probs=187.3
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCC------CCC---CHHHHHHHHHHHhhCCCC-CEEEE---eCCh
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSF------GAP---CLLENVLAEMVISAVPSI-EMVRF---VNSG 101 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~------~~~---~~~~~~l~~~l~~~~~~~-~~v~~---~~~g 101 (411)
.-+.++.+ =++..|.+++++...+.+ . .++ ++. .++++...++..+.++.. +.+.+ .+||
T Consensus 35 ~~l~lias-----en~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG 109 (475)
T PLN03226 35 KGLELIAS-----ENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSG 109 (475)
T ss_pred cCeeEecC-----CccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCch
Confidence 34555554 223688999999999944 1 221 111 222222333455666533 33333 4789
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC------CHHHHHH
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALEN 175 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~ 175 (411)
+.|+.+++... ..+++.|++.+.+..|+..-.....|...-. .+ .......+.++ |++++++
T Consensus 110 ~~AN~av~~aL--~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~------~~----~~~~~~~y~~~~~~g~iD~d~Le~ 177 (475)
T PLN03226 110 SPANFAVYTAL--LQPHDRIMGLDLPHGGHLSHGYQTDGKKISA------TS----IYFESMPYRLDESTGLIDYDKLEK 177 (475)
T ss_pred HHHHHHHHHHh--CCCCCEEEECCCCcCcchhhhhhhccccccc------ce----EEEEeeeeeecCCCCCcCHHHHHH
Confidence 99999988742 3456777775543333222111111110000 00 00011122333 8999999
Q ss_pred HHHcCCCcEEEEEE-cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-cccc-CccccccCCCcch--hhh
Q 015230 176 LFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAY-GGAQEYFGVTPDL--TTL 249 (411)
Q Consensus 176 ~~~~~~~~~~~vi~-~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~-~~~~~~~~~~~d~--~~~ 249 (411)
.+.+. ++++|++ +++ .|...+ +++|.++|++||+++++|++|+ |+ ..+. ...++ ..|+ .|+
T Consensus 178 ~l~~~--~pklIv~~~S~---~s~~~D----~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~----~~Div~~t~ 244 (475)
T PLN03226 178 KAMLF--RPKLIIAGASA---YPRDWD----YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE----YCDVVTTTT 244 (475)
T ss_pred HHhhc--CCeEEEEecCc---CCCccC----HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC----CCeEEEecC
Confidence 98754 3455555 433 445556 8999999999999999999996 55 2221 11111 2454 578
Q ss_pred hhhccCCcccccccccHHHH-----------H---HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHH
Q 015230 250 GKIIGGGLPVGAYGGRRDIM-----------E---MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNK 312 (411)
Q Consensus 250 sK~~~~G~~~g~~~~~~~~~-----------~---~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~ 312 (411)
+|+|.|. +-|+++++++.+ + .+... .+...+.++++...++..++++.+.. ++.++++.+
T Consensus 245 hK~L~GP-~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a--~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~ 321 (475)
T PLN03226 245 HKSLRGP-RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFA--VFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKA 321 (475)
T ss_pred cccccCC-CceEEEEchhhcccccCCCccHHHHHHHhccc--cCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 8999641 235556666433 2 22211 11112334556666777777887765 346788889
Q ss_pred HHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---------
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------- 382 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------- 382 (411)
+.+++++.|++. ++.....+ ...++.+++.... .+..++.+.|.+.||.+..+.
T Consensus 322 na~~L~~~L~~~----G~~l~~~~t~~hi~lv~~~~~g------------i~~~~~~~~L~~~~I~~nk~~~p~~~~~~~ 385 (475)
T PLN03226 322 NAAALANRLMSK----GYKLVTGGTDNHLVLWDLRPLG------------LTGSRVEKVLDLAHITLNKNAVPGDSSALV 385 (475)
T ss_pred HHHHHHHHHHhC----CCEEEcCCCCCCEEEEEccCCC------------CCHHHHHHHHHHCCCEECCCCCCCCcccCC
Confidence 999998888774 33222111 2456667663321 223578888999999997642
Q ss_pred Ccceee------ecCCCHHHHHHHHHHHHHHHH
Q 015230 383 FEAGFT------SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 383 ~~~~~~------~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+.+|+ ...++++|++++.+.|.++++
T Consensus 386 ~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 386 PGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred CCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 234665 367789999999999998876
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-16 Score=141.30 Aligned_cols=308 Identities=20% Similarity=0.175 Sum_probs=191.7
Q ss_pred cHHHHHHHHHHHHcCCCCCC--CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 54 DDQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
..+..+++.+.++++....+ ..++++.+++++ +..+++.++|||.|++.+|+++ ...+++.||+.+.+|-..
T Consensus 14 ~~~e~~~v~~vl~sg~i~~G~~v~~FE~~~ae~~-----G~k~ava~~sgT~AL~laL~al-~ig~GDeVI~ps~TfvAT 87 (374)
T COG0399 14 GEEELAAVQEVLKSGWLTGGPFVRRFEQAFAEYL-----GVKYAVAVSSGTAALHLALLAL-AIGPGDEVIVPSFTFVAT 87 (374)
T ss_pred chHHHHHHHHHHHcCCeecChHHHHHHHHHHHHh-----CCCeEEEecChHHHHHHHHHhc-CCCCCCEEEecCCchHHH
Confidence 35677888899988643322 244455555555 8889999999999999999854 467788999999999865
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
....+..+..++...-.++...+ |++.+|++|.. ++++|+.-... |...+ +++|.+
T Consensus 88 an~i~~~Ga~PVFvDid~~T~ni--------------d~~~ie~aIt~---~tKAIipVhl~---G~~~d----m~~i~~ 143 (374)
T COG0399 88 ANAVLLVGAKPVFVDIDPDTLNI--------------DPDLIEAAITP---RTKAIIPVHLA---GQPCD----MDAIMA 143 (374)
T ss_pred HHHHHHcCCeEEEEecCCcccCC--------------CHHHHHHHccc---CCeEEEEehhc---cCCCC----HHHHHH
Confidence 55544444443333222233333 89999999983 47787776655 44556 999999
Q ss_pred HHHHhCCEEEEeccccccccccCccccccCCCcchhhhh----hhccCCcccccccc-cHHHHHHhcC----CCC-----
Q 015230 212 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGG-RRDIMEMVAP----AGP----- 277 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s----K~~~~G~~~g~~~~-~~~~~~~~~~----~~~----- 277 (411)
+|++||++||.|.+|+ .|..+.-...|-.-|+.+|| |-++.| --|.+++ ++++.+.++. +..
T Consensus 144 la~~~~l~vIEDaAqa---~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~ 219 (374)
T COG0399 144 LAKRHGLPVIEDAAQA---HGATYKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVF 219 (374)
T ss_pred HHHHcCCeEEEEcchh---ccCeecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCccc
Confidence 9999999999999997 22221111223334555554 888865 4566655 4556665542 110
Q ss_pred ----cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee--cc-eEEEEEecCCC
Q 015230 278 ----MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI--SG-MFGFFFTEGPV 350 (411)
Q Consensus 278 ----~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--g~-~~~~~~~~~~~ 350 (411)
...+..+..+-+.++.++.-|+.+ +++.++-+++.+++.+.|+++.. ........+. .. ++.+.+.+.
T Consensus 220 ~y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~~~~~i~~~~~-- 294 (374)
T COG0399 220 KYLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAWHLYTILVDEE-- 294 (374)
T ss_pred cceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeeeeeeEEEecCC--
Confidence 112334455667777777777665 55666677777777777776521 1111111111 11 122222111
Q ss_pred CCcchhcccchHHHHHHHHHHHHcCeE----eccCC----------C-----c--------ceeee--cCCCHHHHHHHH
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEEGVY----FAPSQ----------F-----E--------AGFTS--LAHSSDDIQHTI 401 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~----v~~~~----------~-----~--------~~~~~--~~~t~~~i~~~i 401 (411)
...-+.+.+.|+++||. ..|.. . + .+++| ...+++++++.+
T Consensus 295 ----------~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~ 364 (374)
T COG0399 295 ----------GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVI 364 (374)
T ss_pred ----------CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHH
Confidence 12336889999999554 33321 0 0 14554 577999999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
++|++++..
T Consensus 365 ~~l~~~~~~ 373 (374)
T COG0399 365 EALKEVLGS 373 (374)
T ss_pred HHHHHHhcc
Confidence 999998764
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=139.61 Aligned_cols=306 Identities=14% Similarity=0.033 Sum_probs=189.1
Q ss_pred cHHHHHHHHHHHHcCCCC--C------CCCHHHHHHHHHHHhhCC-CCCEE--EEeCChHHHHHHHHHHHHhccCCcEEE
Q 015230 54 DDQVLAALGETMKKGTSF--G------APCLLENVLAEMVISAVP-SIEMV--RFVNSGTEACMGVLRLARAFTGRERII 122 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~--~------~~~~~~~~l~~~l~~~~~-~~~~v--~~~~~g~~a~~~al~~~~~~~~~~~vi 122 (411)
++.+.+++.+.+.+..+. . ...+.++++.+++++.++ +++++ +||+|||||+..++..++...+++ ++
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~-~v 114 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDG-IL 114 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCc-EE
Confidence 334677777777652211 1 125667899999999998 55665 999999999999998876543334 45
Q ss_pred EEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCC
Q 015230 123 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 202 (411)
Q Consensus 123 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~ 202 (411)
+.+..-|.....++...+.++..++... .+.. |+++|++.+++...++.+++++..+++.|.+.|
T Consensus 115 i~s~~~H~Sv~kaa~~lg~~~~~V~~d~-~g~i-------------d~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp- 179 (374)
T PLN03032 115 YASRESHYSVFKAARMYRMEAVKVPTLP-SGEI-------------DYDDLERALAKNRDKPAILNVNIGTTVKGAVDD- 179 (374)
T ss_pred EeCCCceeHHHHHHHHcCCCCeEeeeCC-CCcC-------------cHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC-
Confidence 5566666555565555565554444322 2221 899999999865446778888888889999999
Q ss_pred HHHHHHHHHHHHHhC-----CEEEEecccccc-cc--c--cCccccccCCCcchhhh--hhhccCCcccccccccHHHHH
Q 015230 203 PDFLNAIRRITKENG-----ALLIFDEVMTGF-RL--A--YGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIME 270 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~-----~~li~De~~~g~-~~--g--~~~~~~~~~~~~d~~~~--sK~~~~G~~~g~~~~~~~~~~ 270 (411)
+++|.++|++|| +++++|.+|.|+ .. . ..+.+ ....|.+++ -|.++....+|.++.+++.++
T Consensus 180 ---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~ 253 (374)
T PLN03032 180 ---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPMPCGVALTRKKHVK 253 (374)
T ss_pred ---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC---CcCCcEEEECcccccCCCcCeEEEEEEchhhH
Confidence 999999999997 489999999755 21 1 11111 113565554 476654455888888877766
Q ss_pred HhcCCCCcccc--cCCCCC--HHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 271 MVAPAGPMYQA--GTLSGN--PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 271 ~~~~~~~~~~~--~t~~~~--~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
.+.....++.. .|..++ ....+.....+..+.. .+..++..++.+++.++|++. +......+..+.+.|
T Consensus 254 ~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~p~~~~V~f 329 (374)
T PLN03032 254 ALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----GLTCRLNELSSTVVF 329 (374)
T ss_pred hhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEEECCCceEEEE
Confidence 55432222211 122222 2334444455554443 566777888888888888774 333222333334333
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-cceeeecCCCHHHHHHHHHHHHH
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
.. +.. .. ..+|-.+.+... -++.+...++++.+|++++-|++
T Consensus 330 ~~-------------~~~---~~-----~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 330 ER-------------PMD---EA-----FIKKWQLACEGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred cC-------------CCc---Hh-----HhheeeecccCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 22 111 11 124554544321 12444567788999999998875
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=146.41 Aligned_cols=328 Identities=15% Similarity=0.089 Sum_probs=184.5
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCC-----CCCHH---HH-HHHHHHHhhCC-CCCEEEEe---CCh
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-----APCLL---EN-VLAEMVISAVP-SIEMVRFV---NSG 101 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~-----~~~~~---~~-~l~~~l~~~~~-~~~~v~~~---~~g 101 (411)
..++++.+ -+..+|.+++++...+.+.. ++. ...+. .+ ...+.+++.++ ..+.+.++ +||
T Consensus 35 ~~l~l~~s-----en~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sg 109 (452)
T PTZ00094 35 EGLELIAS-----ENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSG 109 (452)
T ss_pred cCeeEecc-----cccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCch
Confidence 44565554 22368899999999887632 111 11122 22 24456777776 55666677 789
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-----CCHHHHHHH
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENL 176 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~ 176 (411)
++|+..++... ..+++.|++....+.+............+.. .+ ...++..+++ -|++++++.
T Consensus 110 t~an~~v~~al--~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~------~~----~~~~~~~~~~~~~g~id~~~L~~~ 177 (452)
T PTZ00094 110 SPANFAVYTAL--LQPHDRIMGLDLPSGGHLTHGFYTAKKKVSA------TS----IYFESLPYQVNEKGLIDYDKLEEL 177 (452)
T ss_pred HHHHHHHHHHh--cCCCCEEEecccccCCccccccccccccccc------ce----eeeeeeecccCCCCCcCHHHHHHH
Confidence 99999988754 3345667765544433322111110000000 00 0000111111 189999999
Q ss_pred HHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhh
Q 015230 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKI 252 (411)
Q Consensus 177 ~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~ 252 (411)
+++. +++++++. +++.|...| +++|.++|+++|+++++|++|+ |. ..+ ....... ..|++ |..|+
T Consensus 178 l~~~--~~~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~~G~i~~~-~~~~~~~--~~D~l~~S~hK~ 246 (452)
T PTZ00094 178 AKAF--RPKLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHTSGLVAAG-VLPSPFP--YADVVTTTTHKS 246 (452)
T ss_pred HHHh--CCCEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccchhccccCC-CCCCCCC--CCcEEEcCCccC
Confidence 9753 33445542 345778888 9999999999999999999996 44 221 1111111 34654 56799
Q ss_pred ccCCcccccccccHHHHHHhcCCC--CcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 253 IGGGLPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 253 ~~~G~~~g~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
+.|. ..|+++.++++.+.+.... ..+....-+.++...++..++++.+.. ++..+++.++.+++.+.|++.
T Consensus 247 l~GP-~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~--- 322 (452)
T PTZ00094 247 LRGP-RSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR--- 322 (452)
T ss_pred CCCC-CceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9752 2456666665443322100 011010114456666777777887744 457788888888888888764
Q ss_pred cCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC---------CCcceeee--cC----
Q 015230 328 AGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---------QFEAGFTS--LA---- 391 (411)
Q Consensus 328 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---------~~~~~~~~--~~---- 391 (411)
+......+ ......+.+... +.....+...|.++||.+... ..+.+|+. ..
T Consensus 323 -g~~v~~~~~~~~~~~v~~~~~------------~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g 389 (452)
T PTZ00094 323 -GYDLVTGGTDNHLVLVDLRPF------------GITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRG 389 (452)
T ss_pred -CcEEecCCCCCceEeecCCcC------------CCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCC
Confidence 22111111 112233333211 122357788888889999522 12347773 23
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 015230 392 HSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~ 409 (411)
++++|++++++.|.+++.
T Consensus 390 ~~~~di~~l~~~l~~~~~ 407 (452)
T PTZ00094 390 AKEKDFKFVADFLDRAVK 407 (452)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 359999999999998875
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-16 Score=144.24 Aligned_cols=310 Identities=16% Similarity=0.102 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh
Q 015230 55 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 134 (411)
Q Consensus 55 ~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 134 (411)
++.++++.+.+..+..+ ......++.+.+++.+ +.+++++++||++|+..++... ...+++.||+..++|.+...
T Consensus 14 ~~e~~~~~~~l~~~~~~--~g~~~~~le~~la~~~-g~~~~v~~~sgt~al~lal~al-~~~~Gd~Viv~~~~~~~~~~- 88 (379)
T PRK11658 14 DEELAAVKEVLRSGWIT--TGPKNQALEQAFCQLT-GNQHAIAVSSATAGMHITLMAL-GIGPGDEVITPSLTWVSTLN- 88 (379)
T ss_pred HHHHHHHHHHHHcCCcc--CCHhHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHc-CCCCCCEEEECCCcHHHHHH-
Confidence 55678888888875332 2344567777777766 4457899999999999999743 24567889998888886543
Q ss_pred hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHH
Q 015230 135 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 214 (411)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~ 214 (411)
.....|..+..++........ |++++++.++. ++++|+ |++ ..|...+ +++|.++|+
T Consensus 89 ~~~~~G~~~v~vd~~~~~~~~-------------d~~~l~~~i~~---~tkav~--~~~-~~G~~~d----~~~i~~~a~ 145 (379)
T PRK11658 89 MIVLLGATPVMVDVDRDTLMV-------------TPEAIEAAITP---RTKAII--PVH-YAGAPAD----LDAIRAIGE 145 (379)
T ss_pred HHHHcCCEEEEEecCCCcCCc-------------CHHHHHHhccc---CCeEEE--EeC-CCCCcCC----HHHHHHHHH
Confidence 334445544443332111111 88999988863 466665 333 3566666 999999999
Q ss_pred HhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh--hhccCCcccccccc-cHHHHHHhcCCC---Cc--------
Q 015230 215 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG-RRDIMEMVAPAG---PM-------- 278 (411)
Q Consensus 215 ~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~-~~~~~~~~~~~~---~~-------- 278 (411)
+||+++|+|++|+ |. ..|.. ...++ .++.||+ |.+.+ .+.|+++. ++++.+.++... ..
T Consensus 146 ~~gi~vi~D~a~a~g~~~~~~~--~g~~g--~~~~Sf~~~K~l~~-g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 220 (379)
T PRK11658 146 RYGIPVIEDAAHAVGTYYKGRH--IGARG--TAIFSFHAIKNITC-AEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQT 220 (379)
T ss_pred HcCCeEEEECCCccCCeECCee--cCCCC--CEEEeCCCCCcCcc-cCceEEEECCHHHHHHHHHHHHcCCCcchhhhhc
Confidence 9999999999997 44 33321 11223 2566766 66654 36777765 467766554210 00
Q ss_pred ----------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh-cCCceEEeeec-ceEEEEEe
Q 015230 279 ----------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGYIS-GMFGFFFT 346 (411)
Q Consensus 279 ----------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~g-~~~~~~~~ 346 (411)
..+..+..+.+.++.+...++.+ ++..++.+++.+++++.|+++... ........... .++.+.+.
T Consensus 221 ~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
T PRK11658 221 QGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVD 298 (379)
T ss_pred ccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEEC
Confidence 01112334555666666655544 445667777777777777654110 00000000011 12223331
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------C--------cceeee--cCCCHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTS--LAHSSDDIQH 399 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------~--------~~~~~~--~~~t~~~i~~ 399 (411)
.. ....+.+++.+.|.++||.+.... . ..+.+| ...|+++++.
T Consensus 299 ~~----------~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~ 368 (379)
T PRK11658 299 EE----------RCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDR 368 (379)
T ss_pred Cc----------cccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHH
Confidence 11 001124688999999998765210 0 014444 4578999999
Q ss_pred HHHHHHHHHH
Q 015230 400 TITAAEKVLR 409 (411)
Q Consensus 400 ~i~~l~~~~~ 409 (411)
.++.|++++.
T Consensus 369 i~~~i~~~~~ 378 (379)
T PRK11658 369 VITALQQIAG 378 (379)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=147.67 Aligned_cols=259 Identities=16% Similarity=0.124 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
.....++.+.+++..+. +..++++||+.|+..++.. ...++++|++..+.|++..........
T Consensus 62 ~p~~~~le~~lA~l~g~-~~av~~~sG~~Ai~~al~a--l~~~Gd~Vl~~~~~y~~t~~~~~~~~~-------------- 124 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGA-EDARGFASGMAAISSTVLS--FVEPGDRIVAVRHVYPDAFRLFETILK-------------- 124 (389)
T ss_pred ChhHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH--------------
Confidence 45567888888888854 4456667899999888864 245678899988888764322211100
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
..+.++..++..|++++++.+. ++++|++|.+.+..+...+ +++|.++|++||+++|+|++|+.......
T Consensus 125 --~~G~~v~~vd~~d~~~l~~~i~----~tklV~ie~pt~~~~~~~d----l~~i~~la~~~gi~vivD~a~a~~~~~~p 194 (389)
T PRK05968 125 --RMGVEVDYVDGRDEEAVAKALP----GAKLLYLESPTSWVFELQD----VAALAALAKRHGVVTMIDNSWASPVFQRP 194 (389)
T ss_pred --HcCceEEEeCCCCHHHHHHhcc----cCCEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcchhccCc
Confidence 0112333344448888888763 4567777765555555555 99999999999999999999963211111
Q ss_pred ccccccCCCcchhhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
. .++.+.-+.|++|.++| | .+.|+++.++++++.++.....+.+ ...+++.++.+...++.+ +...++..+
T Consensus 195 --~-~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g--~~~~~~~A~~~l~~L~tl--~~r~~~~~~ 267 (389)
T PRK05968 195 --I-TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLG--AKLSPFEAWLLLRGLRTL--PLRMKAHEA 267 (389)
T ss_pred --h-hcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCC--CCCChHHHHHHHcccCcH--HHHHHHHHH
Confidence 1 12333334589999985 4 5678888888888776531111112 344566666665555433 334455555
Q ss_pred HHHHHHHHHHHHHHhcCCceEE-------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 313 ITGELTQGIIDAGKKAGHAICG-------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
+...+.+.|++. +.+..+ .+.|.++.|++.+ .....++.+.|...++.++
T Consensus 268 ~a~~la~~L~~~----p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~-------------~~~~~~f~~~L~~~~~~~s 330 (389)
T PRK05968 268 SALEIARRLKAH----PVVERVCHPALANHPPAGLSGTSGLFSFIFRE-------------GIDVRAFADALKLFRLGVS 330 (389)
T ss_pred HHHHHHHHHHhC----CCccEEECCCCCCChHHhCCCCceEEEEEECC-------------HHHHHHHHHhCCccEEecC
Confidence 666666666654 322222 1446688888742 2345788888887777666
Q ss_pred cCCCc
Q 015230 380 PSQFE 384 (411)
Q Consensus 380 ~~~~~ 384 (411)
.|+..
T Consensus 331 ~G~~~ 335 (389)
T PRK05968 331 WGGHE 335 (389)
T ss_pred CCCCC
Confidence 65433
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=145.54 Aligned_cols=233 Identities=13% Similarity=0.116 Sum_probs=149.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCC
Q 015230 78 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 157 (411)
Q Consensus 78 ~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 157 (411)
...|.+.+++.. +.+.+++++||++|+..++... ..++++||+.++.|.+......... ..
T Consensus 63 ~~~Le~~iA~le-~~~~~~~~~sG~~Ai~~~l~al--l~~GD~Vvv~~~~Y~~t~~l~~~~l----------------~~ 123 (394)
T PRK09028 63 HFAFQAAIVELE-GGAGTALYPSGAAAISNALLSF--LKAGDHLLMVDSCYEPTRDLCDKIL----------------KG 123 (394)
T ss_pred HHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHhh----------------hh
Confidence 457777777776 4457889999999999988643 4567889999988865432211100 01
Q ss_pred CCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccc
Q 015230 158 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 237 (411)
Q Consensus 158 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~ 237 (411)
.+.++..++..+.+.+++.++ +++++|++|.+.|++|.+.+ +++|.++|++||+++++|++|+ .+ ...
T Consensus 124 ~Gi~v~~v~~~~~e~l~~~l~---~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a---~p--~~~ 191 (394)
T PRK09028 124 FGIETTYYDPMIGEGIRELIR---PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWA---SP--INS 191 (394)
T ss_pred cceEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCcc---cc--ccC
Confidence 122333344446677887775 46889999998888888877 9999999999999999999997 21 112
Q ss_pred cccCCCcch--hhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015230 238 EYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313 (411)
Q Consensus 238 ~~~~~~~d~--~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 313 (411)
....+..|+ .+.+|+++| | ...|+++.+++..+.+.... .......+|..+......++-+ .-..++..++
T Consensus 192 ~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~---~~~G~~~~p~~a~l~~rgl~TL--~lR~~~~~~n 266 (394)
T PRK09028 192 RPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHS---YLMGQCTSPDDVYLAMRGLRTL--GVRLAQHEKN 266 (394)
T ss_pred CccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHH---HhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHH
Confidence 222334454 488999986 3 66777777777666554211 1112345667666665555433 3345667777
Q ss_pred HHHHHHHHHHHHH----hcCC-c---------eEEeeecceEEEEEe
Q 015230 314 TGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFT 346 (411)
Q Consensus 314 ~~~~~~~l~~~~~----~~~~-~---------~~~~~~g~~~~~~~~ 346 (411)
+..+.+.|++... .||. . ....+.|.++.|++.
T Consensus 267 a~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 267 ALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 7777777766421 1111 0 012356889999984
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=143.94 Aligned_cols=239 Identities=15% Similarity=0.110 Sum_probs=148.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
......++.+.+++..+.. ..+.++||++|+..++... ..+++.|++..+.|.+...........
T Consensus 59 ~~p~~~~Le~~lA~~~g~~-~~i~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~t~~~~~~~~~~------------ 123 (388)
T PRK07811 59 GNPTRTALEEQLAALEGGA-YGRAFSSGMAATDCLLRAV--LRPGDHIVIPNDAYGGTFRLIDKVFTR------------ 123 (388)
T ss_pred CCccHHHHHHHHHHHhCCC-ceEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchHHHHHHHHhCcC------------
Confidence 3455678888888887533 4455567899999999753 456788999888887543322111110
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
.+..+..++..|++++++.++ +++++|+++..+|++|...+ +++|.++|++||++||+|++|+......
T Consensus 124 ----~gi~~~~~d~~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~~~~~ 192 (388)
T PRK07811 124 ----WGVEYTPVDLSDLDAVRAAIT---PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASPYLQQ 192 (388)
T ss_pred ----CCeEEEEeCCCCHHHHHHhcC---cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 112334444458899988886 35778888877777788877 9999999999999999999997221111
Q ss_pred CccccccCCCcchhhhhhhccC-C-ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
. . ..+.+.-+.|++|+++| | .+.|+++++ +++.+.+.. .........++..++.+...++.+ +...++.
T Consensus 193 p--~-~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~---~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~~ 264 (388)
T PRK07811 193 P--L-ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAF---LQNGAGAVPGPFDAYLTLRGLKTL--AVRMDRH 264 (388)
T ss_pred c--h-hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhccCcH--HHHHHHH
Confidence 1 1 12222334588999986 4 567888764 666565542 111112334555555555544432 3445666
Q ss_pred HHHHHHHHHHHHHHHH----hcCCc-e---------EEeeecceEEEEEe
Q 015230 311 NKITGELTQGIIDAGK----KAGHA-I---------CGGYISGMFGFFFT 346 (411)
Q Consensus 311 ~~~~~~~~~~l~~~~~----~~~~~-~---------~~~~~g~~~~~~~~ 346 (411)
.++...+.+.|++... .+|.. . ...+.|.++.|++.
T Consensus 265 ~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 265 SENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred HHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 7777777777776420 11110 0 12356889999984
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=144.36 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++.+.+++..+. +..+.++||+.|+..+++.. ..+++.||+..+.|.+.........
T Consensus 63 ~~p~~~~le~~lA~l~g~-~~~i~~~sG~~Al~~~l~~l--l~~Gd~Viv~~~~y~~t~~~~~~~~-------------- 125 (403)
T PRK07503 63 SNPTLALLEQRMASLEGG-EAAVALASGMGAITATLWTL--LRPGDEVIVDQTLYGCTFAFLHHGL-------------- 125 (403)
T ss_pred CCchHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHH--cCCCCEEEEccCccchHHHHHHHHH--------------
Confidence 455678888888888854 44677778999999988742 4567788887776643222111100
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
...+..+..++..|++++++.++ +++++|+++..+|++|...+ +++|.++|++||+++|+|++|+....+.
T Consensus 126 --~~~G~~v~~vd~~d~~~l~~~i~---~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~~~~~ 196 (403)
T PRK07503 126 --GEFGVTVRHVDLTDPAALKAAIS---DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTPYLQR 196 (403)
T ss_pred --hhCCEEEEEeCCCCHHHHHHhcC---ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 00122344455558899988886 35778888887888888888 9999999999999999999997321111
Q ss_pred CccccccCCCcchhhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
.. . ++.+.-+.|++|.+++ | .+.|+++.++++++.++.... ........+++.++.++..++.+ +...++..
T Consensus 197 ~l--~-~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~-~~~~g~~~s~~~a~l~l~~L~tl--~~r~~~~~ 270 (403)
T PRK07503 197 PL--E-LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGL-KDMTGAVMSPFDAFLLMRGLKTL--ALRMDRHC 270 (403)
T ss_pred ch--h-hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhH-HhCcCCCCCHHHHHHHHcCcchH--HHHHHHHH
Confidence 11 1 2222234589999996 5 678888888888877752110 11123566778777777666544 23345555
Q ss_pred HHHHHHHHHHHHH
Q 015230 312 KITGELTQGIIDA 324 (411)
Q Consensus 312 ~~~~~~~~~l~~~ 324 (411)
++...+.+.|++.
T Consensus 271 ~na~~~a~~L~~~ 283 (403)
T PRK07503 271 ASAQAVAEWLARH 283 (403)
T ss_pred HHHHHHHHHHHhC
Confidence 6677777777654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=143.74 Aligned_cols=238 Identities=16% Similarity=0.128 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh-cCCCCcccCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDS 151 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 151 (411)
+.+...+.+.+.+++..+.. ..++++||++|+..++... ..+++.|++..+.|++........ ...
T Consensus 57 ~~~p~~~~Le~~lA~l~g~~-~~v~~~sG~~Ai~~~l~al--l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~---------- 123 (405)
T PRK08776 57 SGNPTRDLLGEALAELEGGA-GGVITATGMGAINLVLNAL--LQPGDTLVVPHDAYGGSWRLFNALAKKG---------- 123 (405)
T ss_pred CCChHHHHHHHHHHHHhCCC-ceEEEcCHHHHHHHHHHHH--hCCCCEEEEccCCchHHHHHHHHHHHhc----------
Confidence 34555688888898887654 4566777899998888643 456788999888887633221111 111
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 230 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~ 230 (411)
+..+..++..|++++++.++ +++++|+++..+|++|.+.+ +++|.++|++||+++|+||+|..- .
T Consensus 124 -------g~~v~~v~~~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~ 189 (405)
T PRK08776 124 -------HFALITADLTDPRSLADALA---QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPAL 189 (405)
T ss_pred -------CcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 11233344448888988886 25677777766677888877 999999999999999999999721 1
Q ss_pred cccCccccccCCCcchhhhhhhccC--Ccccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 231 LAYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 231 ~g~~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
. . ... ++.+.-+.|.+|.++| ++..|+++. ++++.+.+.... .......+++.+......++.+ +...
T Consensus 190 ~-~--pl~-~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~---~~~g~~~s~~~a~l~~~gl~tl--~~r~ 260 (405)
T PRK08776 190 Q-K--PLE-FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWA---NALGLTGSPFDAFLTLRGLRTL--DARL 260 (405)
T ss_pred C-C--ccc-ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhhhCcH--HHHH
Confidence 1 1 111 2333334578899985 366888755 566766664211 1123346788888877666544 4456
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCc----------eEEeeecceEEEEEe
Q 015230 308 EYLNKITGELTQGIIDAGK----KAGHA----------ICGGYISGMFGFFFT 346 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~----~~~~~----------~~~~~~g~~~~~~~~ 346 (411)
++..++...+.+.|++... .+|.. ....+.|.++.|++.
T Consensus 261 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 313 (405)
T PRK08776 261 RVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE 313 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence 7777788887777776420 01100 012456889999984
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=145.07 Aligned_cols=292 Identities=13% Similarity=0.019 Sum_probs=172.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.+...+++.+.+++.. +.+++++++||++|+..++... ..+++.||+.++.|.+..........
T Consensus 62 ~~~pt~~~Le~~lA~l~-g~~~~l~~~sgt~Ai~~~l~al--~~~GD~Vl~~~~~y~~~~~~~~~~~~------------ 126 (394)
T PRK07050 62 HATPTSLALAQRLAEIE-GGRHALLQPSGLAAISLVYFGL--VKAGDDVLIPDNAYGPNRDHGEWLAR------------ 126 (394)
T ss_pred CCCHHHHHHHHHHHHHh-CCCeEEEeccHHHHHHHHHHHH--hCCCCEEEEecCCcccHHHHHHHHHH------------
Confidence 34555688888888887 4679999999999999999754 45678899988888764422111100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
..+..+..++..+.+++++.++ +++++|+++.++|+.+...+ +++|.++|+++|+++|+|++|+ .+
T Consensus 127 ----~~Gi~v~~vd~~~~~~l~~~i~---~~tklV~le~p~Np~~~~~d----i~~I~~ia~~~gi~livD~a~a---~~ 192 (394)
T PRK07050 127 ----DFGITVRFYDPLIGAGIADLIQ---PNTRLIWLEAPGSVTMEVPD----VPAITAAARARGVVTAIDNTYS---AG 192 (394)
T ss_pred ----hcCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccHhh----HHHHHHHHHHcCCEEEEECCcc---cc
Confidence 0111233333335577877775 35778888877766676666 9999999999999999999996 22
Q ss_pred cCccccccCCCcchhhhhhhccCC--cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~G--~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
....--..|.+.-+.+++|.++|| .+.|++++ ++++++.++..+ .....+.++..+..+...++.+ ....++
T Consensus 193 ~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~---~~~G~~~~~~~a~l~lr~l~tl--~~Rl~~ 267 (394)
T PRK07050 193 LAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR---MRLGIGVSADDCSLVLRGLPSL--QVRLAA 267 (394)
T ss_pred cccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH---HhcCCCCCHHHHHHHHcCCCcH--HHHHHH
Confidence 111111123222244799999864 56887755 677777665321 1112344555544443333222 223455
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCc----------eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 310 LNKITGELTQGIIDAGK----KAGHA----------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
..++...+.+.|++... .+|.. ....+.|.++.|++... ....+..++.+.|+..+
T Consensus 268 ~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~----------~~~~~~~~~~~~l~~~~ 337 (394)
T PRK07050 268 HDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDER----------YSPAQVDAFVEALELFA 337 (394)
T ss_pred HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCC----------CCHHHHHHHHHcCCCCe
Confidence 55555566666655310 00100 01124466777777421 02345678888888777
Q ss_pred eEeccCCCcc---------------------eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 376 VYFAPSQFEA---------------------GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 376 i~v~~~~~~~---------------------~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+-++-|+... +|++. --|+.+.+++-|.+++..
T Consensus 338 ~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~sv--GlE~~~dl~~dl~~al~~ 391 (394)
T PRK07050 338 IGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYI--GLEDEADLIADLEQALEA 391 (394)
T ss_pred eccccCCccceEeeCcccccchhhcCCCCCEEEEEe--CcCCHHHHHHHHHHHHHH
Confidence 7665554332 33332 235666777777766654
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=142.39 Aligned_cols=236 Identities=14% Similarity=0.075 Sum_probs=146.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+++....++.+.+++.. + ++++++++|++|+..++... ..++++|++.++.|++....+......
T Consensus 48 y~~p~~~~Le~~lA~l~-~-~~~v~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~~~~~~~~~l~~----------- 112 (366)
T PRK07582 48 ASNPTWRALEAALGELE-G-AEALVFPSGMAAITAVLRAL--LRPGDTVVVPADGYYQVRALAREYLAP----------- 112 (366)
T ss_pred CCCccHHHHHHHHHHHc-C-CCEEEECCHHHHHHHHHHHh--cCCCCEEEEeCCCcHhHHHHHHHHHhc-----------
Confidence 34556678888888887 4 45666678899998888642 456688999899997644332111000
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
.+.++..++.++... .. . +++++++++..+|++|.+.+ +++|.++|+++|+++|+|++|+.. .+
T Consensus 113 -----~G~~v~~v~~~~~~~--~~-~---~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~-~~ 176 (366)
T PRK07582 113 -----LGVTVREAPTAGMAE--AA-L---AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP-LG 176 (366)
T ss_pred -----CeEEEEEECCCChHH--Hh-c---cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc-cc
Confidence 112334444333221 11 1 35677888877777887777 999999999999999999999521 11
Q ss_pred cCccccccCCCcchhhhhhhccC--Ccccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.. ..+ ++.+.-+.|++|+++| |+++||+++ ++++++.+.... .......+++.+..+...++.+ +...++
T Consensus 177 ~~-p~~-~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~---~~~g~~~~~~~a~l~~r~l~tl--~~R~~~ 249 (366)
T PRK07582 177 QR-PLE-LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWR---LLAGAIPGPFEAWLAHRSLGTL--GLRFAR 249 (366)
T ss_pred cC-chh-cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHH---HHhCCCCCHHHHHHHHhccccH--HHHHHH
Confidence 10 111 2322234589999975 688999976 567777665211 1223345677777666665533 334477
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC-ceEE---------eeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGK----KAGH-AICG---------GYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~-~~~~---------~~~g~~~~~~~~ 346 (411)
..++...+.+.|++... .||. ..++ .+.|.++.|++.
T Consensus 250 ~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 250 QCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 77888888888877521 1111 1111 246888999884
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=142.20 Aligned_cols=238 Identities=16% Similarity=0.132 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.+.....|.+.+++.. +.+++++++||++|+..++... ..+++.|++..+.|.+...........
T Consensus 51 ~npt~~~Le~~lA~le-g~e~ivvt~gg~~Ai~~~l~al--l~~Gd~Il~~~~~y~~~~~~~~~~~~~------------ 115 (388)
T PRK08861 51 GNPNRGLLEQTLSELE-SGKGAVVTNCGTSALNLWVSAL--LGPDDLIVAPHDCYGGTYRLFNTRANK------------ 115 (388)
T ss_pred CCchHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHH--cCCCCEEEEcCCchHHHHHHHHHHHhc------------
Confidence 4555678888888887 4689999999999999999743 456778888888887543322111110
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-ccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 232 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g 232 (411)
.+..+..++..|+++++++++ +++++|+++.++|++|.+.+ +++|.++|+++|+++|+|++|. ++..
T Consensus 116 ----~gi~v~~vd~~d~e~l~~~i~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~- 183 (388)
T PRK08861 116 ----GDFKVQFVDQSDAAALDAALA---KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ- 183 (388)
T ss_pred ----CCeEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC-
Confidence 011233333348888888876 36788888877888888888 9999999999999999999997 2211
Q ss_pred cCccccccCCCcchhhhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.. . .+|.+.-+.|++|.++| + ...|++++ ++++.+.+.... .......+|..+...+..++-+ .-..++
T Consensus 184 ~p--l-~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~---~~~G~~~~p~~a~l~~rgl~Tl--~lR~~~ 255 (388)
T PRK08861 184 KP--L-ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWG---NCIGATGTPFDSYMTLRGIRTL--GARMRV 255 (388)
T ss_pred CC--c-ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHH---hccCCCCChHHHHHHHhcCCCH--HHHHHH
Confidence 11 1 12333334578999986 3 66788766 455655554211 1123445667666655554432 333456
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC-c---------eEEeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~-~---------~~~~~~g~~~~~~~~ 346 (411)
..+++..+.+.|++... .||. . ....+.|.++.|++.
T Consensus 256 ~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (388)
T PRK08861 256 HEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA 306 (388)
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence 66667777777765410 1111 0 012456889999984
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-15 Score=139.62 Aligned_cols=325 Identities=12% Similarity=-0.003 Sum_probs=194.2
Q ss_pred CcHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHhhCC-C-C-CEEEE--eCChHHHHHHHHHHHHhc--c-----
Q 015230 53 ADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-S-I-EMVRF--VNSGTEACMGVLRLARAF--T----- 116 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~-~-~-~~v~~--~~~g~~a~~~al~~~~~~--~----- 116 (411)
.+|++.+++...+..... .+...+.+++..+|+++.++ + . +++.+ |+|||||+..+|..++.. .
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578899999888874211 12234778899999999997 3 2 45665 799999999999766421 1
Q ss_pred C---CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 117 G---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 117 ~---~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
+ ....|+....-|.....+....|-.+.+++.....+.. |+++|++++++ ++.+|++..++
T Consensus 133 g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~v-------------d~~~L~~~i~~---~t~lV~~t~g~ 196 (431)
T TIGR01788 133 GKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVI-------------DPEQVVEAVDE---NTIGVVCILGT 196 (431)
T ss_pred CCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceee-------------CHHHHHHHHhh---CCeEEEEEeCC
Confidence 1 12244555555544444444445444444432211111 89999999973 57789999999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHh------CCEEEEecccccc-c---cccCccccccCCCcchhhh--hhhccCCccccc
Q 015230 194 GNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R---LAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGA 261 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~------~~~li~De~~~g~-~---~g~~~~~~~~~~~~d~~~~--sK~~~~G~~~g~ 261 (411)
+++|.+.| +++|.++|+++ ++++++|.+|+|+ . .+.. ..+......|.+++ -|++.+...+|+
T Consensus 197 t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~-~~~~~~~~~DSis~s~HK~~~~P~g~G~ 271 (431)
T TIGR01788 197 TYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL-EWDFRLPRVKSINVSGHKYGLVYPGVGW 271 (431)
T ss_pred CCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc-hhhcCCCCceEEEECchhccCCCCCcEE
Confidence 99999999 99999999999 9999999999865 2 2211 11111113455554 487644334788
Q ss_pred ccccHH--HHHHhcCCCCcccc----cCCCCCHH--HHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 262 YGGRRD--IMEMVAPAGPMYQA----GTLSGNPL--AMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 262 ~~~~~~--~~~~~~~~~~~~~~----~t~~~~~~--~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
++.+++ +.+.+.....+..+ .+...+.. ........+..+.. +++.++..++.+++.++|++. +.
T Consensus 272 l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~----~~ 347 (431)
T TIGR01788 272 VIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKL----GP 347 (431)
T ss_pred EEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 876543 32333211011100 11211211 11122223332222 566677778888888887765 32
Q ss_pred ce-EEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceee--ecCCCHHHHHH
Q 015230 331 AI-CGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLAHSSDDIQH 399 (411)
Q Consensus 331 ~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~--~~~~t~~~i~~ 399 (411)
.. ... +...++.|.+.... +...+..++.+.|.++|+.+..... ..+|+ ...++++.++.
T Consensus 348 ~el~~~~~~~~iV~Fr~~~~~---------~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~ 418 (431)
T TIGR01788 348 FEIISDGSGIPLVAFKLKDDA---------DPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAEL 418 (431)
T ss_pred EEEeeCCCCceEEEEEeCCCC---------CCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHH
Confidence 21 111 24556666664321 0112346789999999987533221 12344 45678899999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
+++.|.+++.++
T Consensus 419 ~~~~~~~~~~~~ 430 (431)
T TIGR01788 419 LIEDIEAALAYL 430 (431)
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=139.96 Aligned_cols=229 Identities=15% Similarity=0.103 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
.....++.+.+++.. +.++++.++||++|+.+++. .+.++++||+..+.|.+........... .++
T Consensus 53 ~p~~~~le~~lA~le-g~~~~v~~~sG~aAi~~~l~---~l~~GD~VI~~~~~yg~~~~~~~~~~~~----------~~~ 118 (364)
T PRK07269 53 NPTRAKLEETLAAIE-SADYALATSSGMSAIVLAFS---VFPVGSKVVAVRDLYGGSFRWFNQQEKE----------GRF 118 (364)
T ss_pred CccHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHH---HhCCCCEEEEecCCcCchHHHHHHHHhc----------CcE
Confidence 444677777777777 67899999999999999885 3456788998888776543211111000 000
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
.+... .|++++++.++ +++++|+++.++|++|...+ +++|.++|+++|+++|+|+++..-
T Consensus 119 ------~~~~~--~d~~~l~~~i~---~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~----- 178 (364)
T PRK07269 119 ------HFTYA--NTEEELIAAIE---EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSP----- 178 (364)
T ss_pred ------EEEec--CCHHHHHHhcC---cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-----
Confidence 01111 27889988886 35778888887777888887 999999999999999999998511
Q ss_pred ccccccCCCcch--hhhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d~--~~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
......+...|+ .|++|.++| | .-.|++++ ++++.+.++.. ........+++.++.+...|+.+ +...++
T Consensus 179 ~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~---~~~~G~~~s~~~a~l~~~~L~tL--~~r~~~ 253 (364)
T PRK07269 179 IYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYN---LNTTGAVLSPFDSYLLMRGLKTL--SLRMER 253 (364)
T ss_pred ccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHH---HHHhCCCCCHHHHHHHHcCCCcH--HHHHHH
Confidence 111122334454 478899986 4 33567666 46666666421 11112456778777777766543 444566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCce--EEeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~~~~~~~~ 346 (411)
.+++..++.+.|++. |.+. ..++.|.++.|++.
T Consensus 254 ~~~na~~~a~~L~~~----p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 254 STANAQEVVAFLKKS----PAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHHHHHHHHHHHhC----CCccEEeCCCcCcEEEEEEC
Confidence 677777777776653 4322 22466888899883
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=138.38 Aligned_cols=302 Identities=17% Similarity=0.160 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh
Q 015230 55 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 134 (411)
Q Consensus 55 ~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 134 (411)
.+.++++.+.++++.. .......+++.+.+++.+ +..+++.++||+.|+.++++++ ...+++.||+..-+|++.. .
T Consensus 5 ~e~~~~v~~~l~s~~~-~~~g~~~~~fE~~~a~~~-g~~~~~~~~sgt~Al~~al~~l-~~~~gdeVi~p~~t~~~~~-~ 80 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWL-STYGPYVEEFEKEFAEYF-GVKYAVAVSSGTSALHLALRAL-GLGPGDEVIVPAYTFPATA-S 80 (363)
T ss_dssp HHHHHHHHHHHHHTCC-SSSSHHHHHHHHHHHHHH-TSSEEEEESSHHHHHHHHHHHT-TGGTTSEEEEESSS-THHH-H
T ss_pred HHHHHHHHHHHHhCCc-cCCCHHHHHHHHHHHHHh-CCCeEEEeCChhHHHHHHHHhc-CCCcCceEecCCCcchHHH-H
Confidence 4667888888888632 222455566666666666 7889999999999999999863 5667899999988888543 3
Q ss_pred hhhhcCCCCcccCCC-CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 135 FLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 135 ~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
+....|..++...+. ....+ |++++++.++ +++++|++.+.. |...+ +++|.++|
T Consensus 81 ai~~~G~~pv~~Di~~~~~~i--------------d~~~~~~~i~---~~t~ai~~~h~~---G~~~d----~~~i~~~~ 136 (363)
T PF01041_consen 81 AILWAGAEPVFVDIDPETLNI--------------DPEALEKAIT---PKTKAILVVHLF---GNPAD----MDAIRAIA 136 (363)
T ss_dssp HHHHTT-EEEEE-BETTTSSB---------------HHHHHHHHH---TTEEEEEEE-GG---GB-------HHHHHHHH
T ss_pred HHHHhccEEEEEeccCCcCCc--------------CHHHHHHHhc---cCccEEEEecCC---CCccc----HHHHHHHH
Confidence 444445544444432 22222 8999999998 356888777665 44445 99999999
Q ss_pred HHhCCEEEEeccccccccccCccccccCCCcchhhhh----hhccCCccccccccc-HHHHHHhcC---CC------Ccc
Q 015230 214 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AG------PMY 279 (411)
Q Consensus 214 ~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s----K~~~~G~~~g~~~~~-~~~~~~~~~---~~------~~~ 279 (411)
++||++||.|.+|+ .|..+.-...|-.-|+.+|| |.+++| -.|+++++ +++.+.++. .. ..+
T Consensus 137 ~~~~i~lIeD~a~a---~g~~~~g~~~G~~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (363)
T PF01041_consen 137 RKHGIPLIEDAAQA---FGARYKGRPVGSFGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDAFRRY 212 (363)
T ss_dssp HHTT-EEEEE-TTT---TT-EETTEETTSSSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTT
T ss_pred HHcCCcEEEccccc---cCceeCCEeccCCCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCccccccc
Confidence 99999999999997 22111111222233555444 888743 24666664 555555432 11 001
Q ss_pred -----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-------eecceEEEEEec
Q 015230 280 -----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-------YISGMFGFFFTE 347 (411)
Q Consensus 280 -----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~g~~~~~~~~~ 347 (411)
.+..+..+.+.++.++..|+.+ ++..++-+++..++.+.|.+. +...... .....+.+.+.+
T Consensus 213 ~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~----~~~~~~~~~~~~~~~~~~~f~i~~~~ 286 (363)
T PF01041_consen 213 RHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGI----PGIKPPPIPDGAERSSYYRFPIRLPD 286 (363)
T ss_dssp EESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTG----TTEEEEGCGTTTEEBCESSEEEEETC
T ss_pred cccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcC----CCcccccccccccccccccccccccc
Confidence 2335677888888888877655 445566666777777777665 3221111 112223333321
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-cc---------------------------eeee--cCCCHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EA---------------------------GFTS--LAHSSDDI 397 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~---------------------------~~~~--~~~t~~~i 397 (411)
.. ....+.+.+.|.++||-+.+... +. +.+| ...+++++
T Consensus 287 ~~-----------~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv 355 (363)
T PF01041_consen 287 EA-----------LADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDV 355 (363)
T ss_dssp CG-----------CSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHH
T ss_pred cc-----------cchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHH
Confidence 10 01247899999999999877531 10 3443 56689999
Q ss_pred HHHHHHHH
Q 015230 398 QHTITAAE 405 (411)
Q Consensus 398 ~~~i~~l~ 405 (411)
+.+++.|+
T Consensus 356 ~~I~~~ir 363 (363)
T PF01041_consen 356 DYIAEAIR 363 (363)
T ss_dssp HHHHHHHH
T ss_pred HHHhhccC
Confidence 99998875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=140.41 Aligned_cols=285 Identities=12% Similarity=0.077 Sum_probs=174.1
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
....+++.+.+++.++. +++++++||+.|+..++. ...+++.|++.++.|.+..........
T Consensus 46 ~p~~~~le~~la~l~g~-~~~l~~~sG~~al~~~l~---ll~~Gd~Vl~~~~~y~~~~~~~~~~~~-------------- 107 (378)
T TIGR01329 46 NPTRTALESLLAKLDKA-DRAFAFSSGMAALDVITR---LLNNGDEIIAGDDLYGGTDRLLTQVVP-------------- 107 (378)
T ss_pred ChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHH---HhCCCCEEEEcCCCchHHHHHHHHHHH--------------
Confidence 34467888888888754 677888889999887665 345677888888877653322111100
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cccccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g~ 233 (411)
..+..+..++..|+++++++++ +++++|+++.+.|+.|.+.+ +++|.++|++||+++|+|++|. +.. ..
T Consensus 108 --~~G~~v~~vd~~d~~~le~~i~---~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~~~-~~ 177 (378)
T TIGR01329 108 --RSGVVVVHVDTTDLDKVKAALG---PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSPLL-CN 177 (378)
T ss_pred --HcCcEEEEeCCCCHHHHHHhcC---cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccccc-CC
Confidence 0122344444558899998886 46789999988888898888 9999999999999999999995 211 11
Q ss_pred CccccccCCCcchhhhhhhccC--Ccccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
. . .++.+.-+.+++|+++| +...|++++ ++.+.+.+... ........++..++.....++.+ +...++.
T Consensus 178 ~--l-~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~---~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~ 249 (378)
T TIGR01329 178 P--L-ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFL---QNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQ 249 (378)
T ss_pred h--h-hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHH---HHhcCCcCCHHHHHHHHccCCCH--HHHHHHH
Confidence 1 1 12333334578999985 366888876 45555555421 11112334555554433333222 3345566
Q ss_pred HHHHHHHHHHHHHHHH----hcCCc-e---------EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe
Q 015230 311 NKITGELTQGIIDAGK----KAGHA-I---------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 376 (411)
Q Consensus 311 ~~~~~~~~~~l~~~~~----~~~~~-~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 376 (411)
.++...+.+.|++... .+|.. . ...+.|.++.|++. ....+.++...|...++
T Consensus 250 ~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~-------------~~~~~~~~~~~L~~~~i 316 (378)
T TIGR01329 250 QENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG-------------SVALSKRLVEATKLFSI 316 (378)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC-------------CHHHHHHHHHhCcCccc
Confidence 6666666666664311 00100 0 12346778888882 12335678888876677
Q ss_pred EeccCCCcc---------------------------eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 377 YFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 377 ~v~~~~~~~---------------------------~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.++.|+... +|++ .--|+.+.+++-|++++++
T Consensus 317 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~s--vGlE~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 317 TVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLS--VGIEDVDDLISDLDIAFVT 375 (378)
T ss_pred ccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEE--eccCCHHHHHHHHHHHHHh
Confidence 777765433 2222 2235667777777777764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=140.19 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
.....++.+.+++..+ .+..++++||++|+..++... ..+++.|++..+.|++.........
T Consensus 57 ~pt~~~Le~~lA~l~g-~~~~l~~ssG~~Ai~~al~al--~~~Gd~Vl~~~~~Y~~t~~~~~~~l--------------- 118 (425)
T PRK06084 57 NPTNDVLEQRVAALEG-GVGALAVASGMAAITYAIQTI--AEAGDNIVSVAKLYGGTYNLLAHTL--------------- 118 (425)
T ss_pred CchHHHHHHHHHHHhC-CCceeEehhHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHhc---------------
Confidence 4556788888888885 456778889999999999743 3456789998888886443221110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
...+.++..++..|++++++.++. ++++|++++++|++|.+.+ +++|.++|++||++||+|++|+. +..
T Consensus 119 -~~~gi~v~~~d~~d~e~le~ai~~---~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~---~~~ 187 (425)
T PRK06084 119 -PRIGIETRFAAHDDIAALEALIDE---RTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVAT---PVL 187 (425)
T ss_pred -ccceeEEEEECCCCHHHHHHHhcc---CCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc---ccc
Confidence 001123344555689999998873 5778888988888999888 99999999999999999999972 111
Q ss_pred ccccccCCCcc--hhhhhhhccC-Ccccccccc-cHHH-HHHh-------cCCCCc-----------------------c
Q 015230 235 GAQEYFGVTPD--LTTLGKIIGG-GLPVGAYGG-RRDI-MEMV-------APAGPM-----------------------Y 279 (411)
Q Consensus 235 ~~~~~~~~~~d--~~~~sK~~~~-G~~~g~~~~-~~~~-~~~~-------~~~~~~-----------------------~ 279 (411)
........| +.|++|+++| |.++|+++. +... .... ....+. .
T Consensus 188 --~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 265 (425)
T PRK06084 188 --CRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPL 265 (425)
T ss_pred --CChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHH
Confidence 111222345 4589999996 678777654 3321 1110 000000 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
.......++..++..+..++.+ +...++..++...+.+.|++.
T Consensus 266 ~~~g~~l~~~~a~l~lrgl~tl--~~R~~~~~~na~~la~~L~~~ 308 (425)
T PRK06084 266 RNMGAALSPFNAFLILQGLETL--ALRMERHTENALKVARYLQQH 308 (425)
T ss_pred HhcCCCCCHHHHHHHHcCcCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence 1112345566666555554433 445667777777888888765
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.7e-15 Score=140.03 Aligned_cols=306 Identities=15% Similarity=0.122 Sum_probs=178.6
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH-------hccCCcEEEEEeCCcC
Q 015230 57 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-------AFTGRERIIKFEGCYH 129 (411)
Q Consensus 57 v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~-------~~~~~~~vi~~~~~~~ 129 (411)
..+++.+.+..+....+ ....++.+.+++.+ +.+++++++||++|+..++.++. ...+++.||+..++|.
T Consensus 46 ~~~a~~~~~~~~~~~~G--~~~~~fe~~lA~~~-g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~ 122 (438)
T PRK15407 46 ELQNLVDASLDFWLTTG--RFNDAFEKKLAEFL-GVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFP 122 (438)
T ss_pred HHHHHHHHHHhCcccCC--hhHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcH
Confidence 34555566655332222 23455666666666 55689999999999999997542 2355788999999987
Q ss_pred CCchhhhhhcCCCCcccCCCC-CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+..... ...|..+..++... .... |++++++.+. +++++|++++.. |...+ +++
T Consensus 123 a~~~~v-~~~G~~pv~vdvd~~~~~i--------------d~~~le~~i~---~~tkaVi~~~~~---G~p~d----l~~ 177 (438)
T PRK15407 123 TTVNPI-IQNGLVPVFVDVELPTYNI--------------DASLLEAAVS---PKTKAIMIAHTL---GNPFD----LAA 177 (438)
T ss_pred HHHHHH-HHcCCEEEEEecCCCcCCc--------------CHHHHHHHcC---cCCeEEEEeCCC---CChhh----HHH
Confidence 654433 33344333322211 1111 7899998876 357777777643 33344 999
Q ss_pred HHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh----hhccCCccccccccc-HHHHHHhc---CCCC-
Q 015230 209 IRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVA---PAGP- 277 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s----K~~~~G~~~g~~~~~-~~~~~~~~---~~~~- 277 (411)
|.++|++||++||+|++|+ |- ..|.. .|-.-|+.+|| |.+..| ..|+++++ +++.+.++ ....
T Consensus 178 I~~la~~~gi~vIeDaa~a~G~~~~g~~-----~G~~gd~~~fSf~~~k~~~~g-eGG~l~t~d~~l~~~~~~~~~~G~~ 251 (438)
T PRK15407 178 VKAFCDKHNLWLIEDNCDALGSTYDGRM-----TGTFGDIATLSFYPAHHITMG-EGGAVFTNDPLLKKIIESFRDWGRD 251 (438)
T ss_pred HHHHHHHCCCEEEEECccchhhhcCCee-----eeccCceEEEeCCCCCCcccc-CceEEEECCHHHHHHHHHHHHhCcc
Confidence 9999999999999999997 32 22211 12222555444 666633 34777665 44443322 1000
Q ss_pred ----------------------------c----ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 278 ----------------------------M----YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 278 ----------------------------~----~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
. ..+..+..+.+.++.++..|+.+ ++..++-+++.+++.+.|.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~ 329 (438)
T PRK15407 252 CWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLE 329 (438)
T ss_pred cccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCC
Confidence 0 02334566778888888888766 4566777777777777776541
Q ss_pred HhcCCceEEee-ecc--eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------------C--c--
Q 015230 326 KKAGHAICGGY-ISG--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------------F--E-- 384 (411)
Q Consensus 326 ~~~~~~~~~~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------------~--~-- 384 (411)
..........+ ... .+.+.+.+. .....+++.+.|.++||-+.+.. . .
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~ 398 (438)
T PRK15407 330 DFLILPEATPNSDPSWFGFPITVKED-----------AGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGE 398 (438)
T ss_pred CccccCcCCCCCeeEEEEEEEEECCc-----------CCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCC
Confidence 00001111111 111 222333211 01123689999999999654210 0 0
Q ss_pred ----------ceeee--cCCCHHHHHHHHHHHHHHHH
Q 015230 385 ----------AGFTS--LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 385 ----------~~~~~--~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+.+| ...|+++++..++.|+++++
T Consensus 399 ~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 399 LTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred ChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 03444 35689999999999998764
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-15 Score=138.32 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
.....++.+.+++.++ .+++++++||+.|+..++... ..+++.|++..+.|++...........
T Consensus 52 np~~~~lE~~lA~l~g-~~~~l~~~sG~~Ai~~~l~~l--l~~GD~Vlv~~~~y~~~~~~~~~~~~~------------- 115 (385)
T PRK08574 52 NPTLRPLEEALAKLEG-GVDALAFNSGMAAISTLFFSL--LKAGDRVVLPMEAYGTTLRLLKSLEKF------------- 115 (385)
T ss_pred CccHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHhhcc-------------
Confidence 4456778888888874 457788899999999988642 456788888888887644332211111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cccccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g~ 233 (411)
+.++..+. .|++++++.++. .++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+ ++.. .
T Consensus 116 ----g~~v~~~~-~d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~~~-~ 183 (385)
T PRK08574 116 ----GVKVVLAY-PSTEDIIEAIKE--GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPLLY-R 183 (385)
T ss_pred ----CcEEEEEC-CCHHHHHHhcCc--cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccccC-C
Confidence 11121221 267888888863 26788889988888898888 9999999999999999999996 3211 1
Q ss_pred CccccccCCCcchhhhhhhccC-Ccc-cccc-cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-GLP-VGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G~~-~g~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
.. .+|.+.-+.|++|+++| |-. .|++ ..++++.+.+..... ......+++.++.+...++.+ +...++.
T Consensus 184 --~l-~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~---~~g~~~~p~~a~l~l~~l~tL--~~R~~~~ 255 (385)
T PRK08574 184 --PL-RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR---RLGTIMQPFEAYLVLRGLKTL--EVRFERQ 255 (385)
T ss_pred --hh-hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH---hcCCCCCHHHHHHHHcccCcH--HHHHHHH
Confidence 11 13333335589999986 544 4545 446777776652211 123345667666666665544 3344556
Q ss_pred HHHHHHHHHHHHHH
Q 015230 311 NKITGELTQGIIDA 324 (411)
Q Consensus 311 ~~~~~~~~~~l~~~ 324 (411)
.++..++.+.|++.
T Consensus 256 ~~na~~la~~L~~~ 269 (385)
T PRK08574 256 CRNAMAIAEFLSEH 269 (385)
T ss_pred HHHHHHHHHHHHcC
Confidence 66777777777654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=140.43 Aligned_cols=162 Identities=18% Similarity=0.165 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++.+.+++..+ .+..++++||++|+..++... ..+++.|++..+.|++..........
T Consensus 55 ~~p~~~~le~~lA~l~g-~~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vl~~~~~y~~t~~~~~~~~~------------- 118 (418)
T TIGR01326 55 MNPTTDVLEQRIAALEG-GVAALAVASGQAAITYAILNL--AQAGDNIVSSSYLYGGTYNLFKHTLK------------- 118 (418)
T ss_pred CChhHHHHHHHHHHHhC-CCeEEEEccHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHHHH-------------
Confidence 45556889999988885 467899999999999999743 34567888988888764332211100
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
..+..+..++.+|++++++.++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+. +.
T Consensus 119 ---~~G~~v~~v~~~d~~~l~~~l~---~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~---~~ 185 (418)
T TIGR01326 119 ---RLGIEVRFVDPDDPEEFEKAID---ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFAT---PY 185 (418)
T ss_pred ---HcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCch---hh
Confidence 0112344444558899998886 35778888888888888888 99999999999999999999961 11
Q ss_pred CccccccCCCcch--hhhhhhccC-CcccccccccH
Q 015230 234 GGAQEYFGVTPDL--TTLGKIIGG-GLPVGAYGGRR 266 (411)
Q Consensus 234 ~~~~~~~~~~~d~--~~~sK~~~~-G~~~g~~~~~~ 266 (411)
........+|+ .|++|++++ |+|+|++++++
T Consensus 186 --~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 186 --LCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred --cCCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 11112223454 489999996 89999987654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-15 Score=139.95 Aligned_cols=210 Identities=13% Similarity=0.154 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDS 151 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~ 151 (411)
....+++.+++++.. +.+.+++++||+.|+..++. ...+++.||+.++.|++...... ...|.
T Consensus 132 npt~~aLE~~lA~le-g~e~ai~~~SG~aAi~~il~---ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~---------- 197 (464)
T PLN02509 132 NPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV---------- 197 (464)
T ss_pred CHHHHHHHHHHHHHh-CCCEEEEeCcHHHHHHHHHH---HhCCCCEEEEcCCchhhHHHHHHHHHHHCCe----------
Confidence 456788999998887 55677788889988865553 34567889998888876432211 11122
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~ 231 (411)
.+..++..|++++++.++ +++++|+++.++|+.|.+.+ +++|.++|++||+++|+|++|+....
T Consensus 198 ---------~v~~vd~~d~e~l~~ai~---~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 198 ---------VVKRVNTTNLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred ---------EEEEeCCCCHHHHHHhCC---cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcccccc
Confidence 233444558888888875 46788999998888888877 99999999999999999999961111
Q ss_pred ccCccccccCCCcch--hhhhhhccC-C-ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 232 AYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 232 g~~~~~~~~~~~~d~--~~~sK~~~~-G-~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
+. ..+...|+ .|++|+++| | .-.|.++++ +.+.+.+.... .......++..++.++..++.+ +..
T Consensus 262 ~~-----pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~---~~~g~~l~p~~A~l~lr~L~tL--~~R 331 (464)
T PLN02509 262 SR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ---NSEGSGLAPFDCWLCLRGIKTM--ALR 331 (464)
T ss_pred CC-----hhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHH---HhcCCCcCHHHHHHHHhhhhhH--HHH
Confidence 11 11223454 578999986 4 335555553 43444332100 1112234777777777777665 345
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015230 307 YEYLNKITGELTQGIIDA 324 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~ 324 (411)
.++.+++..++.+.|++.
T Consensus 332 ~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 332 IEKQQENARKIAMYLSSH 349 (464)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 677788888888888764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-14 Score=144.88 Aligned_cols=302 Identities=14% Similarity=0.136 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChH----HHHHHHHHHHHhccC--CcEEEEEeCCcCCCchhhhhhcCCCCcccCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGT----EACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGL 148 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~----~a~~~al~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~ 148 (411)
.+...++.+++++.+ +.+.|.|+++++ +|+..+++..+...+ +.++|+.+.+-|+.....+...|-.+..++.
T Consensus 567 ~~~~~~~r~~la~i~-g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~ 645 (993)
T PLN02414 567 QEMFEDLGDLLCEIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGT 645 (993)
T ss_pred HHHHHHHHHHHHHHh-CCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEecc
Confidence 455678888888888 569999999888 788888876543322 1236777778888777777776666666554
Q ss_pred CCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc
Q 015230 149 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g 228 (411)
. ..+.. |+++|++.++.+.+++++|++...++.+|...+ +++|.++|+++|+++++|.++.
T Consensus 646 d-~~G~v-------------Dle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~- 706 (993)
T PLN02414 646 D-AKGNI-------------NIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM- 706 (993)
T ss_pred C-CCCCc-------------CHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH-
Confidence 3 22322 999999999866567899999888888898888 9999999999999999999995
Q ss_pred cccccCccccccCCCcchhh--hhhhcc----CCcc-cccccccHHHHHHhcCCC---Cc------cc--ccCCC----C
Q 015230 229 FRLAYGGAQEYFGVTPDLTT--LGKIIG----GGLP-VGAYGGRRDIMEMVAPAG---PM------YQ--AGTLS----G 286 (411)
Q Consensus 229 ~~~g~~~~~~~~~~~~d~~~--~sK~~~----~G~~-~g~~~~~~~~~~~~~~~~---~~------~~--~~t~~----~ 286 (411)
.+............|+++ ..|+|+ +|-| +|.+.+++++...+.... .. .. ..+.. +
T Consensus 707 --~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g 784 (993)
T PLN02414 707 --NAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWG 784 (993)
T ss_pred --HhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhh
Confidence 111011111123346654 468776 2334 888888887766654210 00 00 01211 2
Q ss_pred CHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-e--EEEEEecCCCCCcchhcccc
Q 015230 287 NPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISG-M--FGFFFTEGPVYNFEDAKKSE 360 (411)
Q Consensus 287 ~~~~~a~~~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~ 360 (411)
+.+.+..+...+..+..+.+ .++...+.+|++++|++. ++.... ...|. + +.+.+... + ...
T Consensus 785 ~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~~~-~~~~~~~hEfv~~~~~l--~------~~~ 852 (993)
T PLN02414 785 SALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVLFR-GKNGTCAHEFIIDLRPF--K------NTA 852 (993)
T ss_pred hHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCcccc-CCCCCeeeeEEEecccc--c------ccc
Confidence 22444445555555554444 677888899999999773 232221 11122 1 11122100 0 001
Q ss_pred hHHHHHHHHHHHHcCeEeccCC---Ccceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 361 TTKFARFYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 361 ~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.....+.+.|.+.||...... ...+++ .-..+++|||++++++..+..+
T Consensus 853 g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e 907 (993)
T PLN02414 853 GIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE 907 (993)
T ss_pred CCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 1233678999999999875422 223444 4677999999999999887654
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=136.94 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
......|.+.+++..+ .+..++++||+.|+..++... ..+++.|++..+.|++..........
T Consensus 63 ~p~~~~Le~~lA~leg-~~~al~~~sG~~Ai~~al~~l--l~~GD~Vlv~~~~y~~t~~~~~~~~~-------------- 125 (431)
T PRK08248 63 NPTTDVFEKRIAALEG-GIGALAVSSGQAAITYSILNI--ASAGDEIVSSSSLYGGTYNLFAHTLP-------------- 125 (431)
T ss_pred CchHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCchhhHHHHHHHHHH--------------
Confidence 4456788888888875 568889999999999998643 45678888888888765433211110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
..+.++..++..|++++++.++ +++++|+++..+|++|.+.+ +++|.++|+++|+++|+|++++ .+..
T Consensus 126 --~~Gv~v~~vd~~d~e~l~~ai~---~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a---~~~~ 193 (431)
T PRK08248 126 --KLGITVKFVDPSDPENFEAAIT---DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA---SPYL 193 (431)
T ss_pred --hCCEEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC---cccc
Confidence 0122344445558899998886 35778888887788899998 9999999999999999999996 1111
Q ss_pred c-cccccCCCcchhhhhhhccC-Ccccccccc
Q 015230 235 G-AQEYFGVTPDLTTLGKIIGG-GLPVGAYGG 264 (411)
Q Consensus 235 ~-~~~~~~~~~d~~~~sK~~~~-G~~~g~~~~ 264 (411)
. .. .++.+.-+.|++|.++| |.++|+++.
T Consensus 194 ~~pl-~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 194 LRPI-EHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred CChh-HcCCCEEEEcCccccCCCCCceEEEEE
Confidence 0 11 23333334578999996 778887754
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-15 Score=140.10 Aligned_cols=239 Identities=17% Similarity=0.146 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
......+.+.+++..+ .+..++++||++|+..+++.. ..+++.||+....|++.........
T Consensus 62 ~p~~~~le~~lA~l~g-~~~al~~~SG~~Ai~~al~al--l~pGd~VIv~~~~y~~t~~~~~~~~--------------- 123 (427)
T PRK05994 62 NPTNAVLEERVAALEG-GTAALAVASGHAAQFLVFHTL--LQPGDEFIAARKLYGGSINQFGHAF--------------- 123 (427)
T ss_pred CccHHHHHHHHHHHhC-CCcEEEEcCHHHHHHHHHHHH--hCCCCEEEEecCcchhHHHHHHHHH---------------
Confidence 4456788888888885 445888899999999998753 4567889999999887532211100
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
...+..+..++..|++++++.++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++++. +
T Consensus 124 -~~~G~~v~~vd~~d~~~l~~ai~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~---~-- 190 (427)
T PRK05994 124 -KSFGWQVRWADADDPASFERAIT---PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS---P-- 190 (427)
T ss_pred -HhcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc---c--
Confidence 00122344455558899998886 36789999988888999988 99999999999999999999971 1
Q ss_pred ccccccCCCcchh--hhhhhccC-Cccccccccc-HH-----------------------HHHHhc-------CCCCccc
Q 015230 235 GAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR-RD-----------------------IMEMVA-------PAGPMYQ 280 (411)
Q Consensus 235 ~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~-~~-----------------------~~~~~~-------~~~~~~~ 280 (411)
.........+|++ |++|.++| |-.+|+++.. .. +.+.+. .......
T Consensus 191 ~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (427)
T PRK05994 191 YLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLR 270 (427)
T ss_pred ccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHH
Confidence 1112223455654 78999986 5456654331 11 111000 0000000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH----hcCCc-e---------E-EeeecceEEEEE
Q 015230 281 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAGHA-I---------C-GGYISGMFGFFF 345 (411)
Q Consensus 281 ~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~-~---------~-~~~~g~~~~~~~ 345 (411)
......+++.++.+...++.+ +...++..++...+.+.|++... .||.. . . ..+.|.++.|++
T Consensus 271 ~~G~~~~~~~A~l~~~~l~tL--~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l 348 (427)
T PRK05994 271 DLGPAISPFNAFLILTGIETL--PLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGL 348 (427)
T ss_pred hcCCCCCHHHHHHHHcCcccH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEe
Confidence 112235666666666555433 44556777777788788776521 11111 0 0 245678899988
Q ss_pred e
Q 015230 346 T 346 (411)
Q Consensus 346 ~ 346 (411)
.
T Consensus 349 ~ 349 (427)
T PRK05994 349 K 349 (427)
T ss_pred c
Confidence 4
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-14 Score=136.17 Aligned_cols=318 Identities=16% Similarity=0.127 Sum_probs=181.0
Q ss_pred CCcHHHHHHHHHHH--HcCCCCC------CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHh--cc----C
Q 015230 52 HADDQVLAALGETM--KKGTSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA--FT----G 117 (411)
Q Consensus 52 ~~~~~v~~a~~~~l--~~~~~~~------~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~--~~----~ 117 (411)
+.+|.+.+++.+.. .....|+ +..+.+.++.+++++.++-.+..++.++|+.+...++.+++. .. +
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~ 160 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTK 160 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCC
Confidence 46788888887752 2222331 224667888888988886223344445666665554433322 22 2
Q ss_pred CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 118 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
+++|++.++.|+. +...+...|..+..++... .+.. |++++++.++ +++++++++..+ .+|
T Consensus 161 ~~~Vlv~~~~hp~-~~~~~~~~G~~vv~v~~~~-~~~~-------------D~e~L~~~i~---~~t~~V~v~~Pn-~tG 221 (481)
T PRK04366 161 RTEVIVPDSAHGT-NPASAAMAGFKVVEIPSNE-DGLV-------------DLEALKAAVG---EDTAALMLTNPN-TLG 221 (481)
T ss_pred CCEEEEcCCccHh-HHHHHHHcCCEEEEeecCC-CCCc-------------CHHHHHhhcc---cCCeEEEEeCCC-Ccc
Confidence 3477787776654 4444455555554443321 1111 8899988886 245665555434 566
Q ss_pred cc-CCCHHHHHHHHHHHHHhCCEEEEecccc-ccccccCccccccCCCcchh--hhhhhccC----Ccc-cccccccHHH
Q 015230 198 FI-APKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGG----GLP-VGAYGGRRDI 268 (411)
Q Consensus 198 ~~-~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~~~~d~~--~~sK~~~~----G~~-~g~~~~~~~~ 268 (411)
.+ .+ +++|.++|+++|+++++|+++. +. .|.. ....+| .|++ +..|+|++ |.| +|++++++++
T Consensus 222 ~~~~d----l~eI~~~a~~~gal~iVD~a~~~~~-~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~ 293 (481)
T PRK04366 222 LFERN----ILEIAEIVHEAGGLLYYDGANLNAI-LGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEEL 293 (481)
T ss_pred ccchH----HHHHHHHHHHcCCEEEEEecChhhh-cccC-CccccC--CCEEEEechhhcCCCCCCCCCCeeeeeehhhh
Confidence 65 23 9999999999999999999995 21 1211 112233 4654 45698862 223 6777888877
Q ss_pred HHHhcCC------CCcc----------cccCCCCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 269 MEMVAPA------GPMY----------QAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 269 ~~~~~~~------~~~~----------~~~t~~~~~~~~a~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
...+... .... ..-.++++.+.+.++...+..+..+ +..++..++.++++++|+++ +.
T Consensus 294 ~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~---~~ 370 (481)
T PRK04366 294 APFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI---YD 370 (481)
T ss_pred HhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---Cc
Confidence 7766310 0000 0011223334445555555554443 44456777888999999886 22
Q ss_pred CceEEeeec-ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----Ccceee--ecCCCHHHHHHHH
Q 015230 330 HAICGGYIS-GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFT--SLAHSSDDIQHTI 401 (411)
Q Consensus 330 ~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~--~~~~t~~~i~~~i 401 (411)
.... +.. ..+.+...... ..+....++.+.|.++|+.+.... ...+++ ...+|++|||+++
T Consensus 371 ~~~~--~~~~~~~~~~~~~~~---------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~ 439 (481)
T PRK04366 371 LPYD--RPCMHEFVLSGKKLK---------ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFI 439 (481)
T ss_pred ccCC--CCeeEEEEEECcccc---------ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHH
Confidence 2211 100 11112111000 011234789999999999876322 224555 4577999999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
+.|+++.++
T Consensus 440 ~~l~~i~~~ 448 (481)
T PRK04366 440 AAMKQIAEE 448 (481)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=135.61 Aligned_cols=237 Identities=14% Similarity=0.058 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.++..+.+++.+++..++.+. ++++||++|+..++.. ...++++||+.++.|++...........
T Consensus 62 gnPt~~~Le~~la~le~~~~~-v~~sSG~aAi~~~l~a--ll~~GD~Vlv~~~~Y~~~~~l~~~~l~~------------ 126 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSAGT-ILVPSGLAAVTVPFLG--FLSPGDHALIVDSVYYPTRHFCDTMLKR------------ 126 (395)
T ss_pred CChHHHHHHHHHHHHhCCCCE-EEECcHHHHHHHHHHH--hcCCCCEEEEccCCcHHHHHHHHHHHHh------------
Confidence 366678888888887755444 5556699999998864 2557788999999888754322111110
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
.+..+..++..+.+.++++++ +++++|++|.+.|+.+.+.+ +++|.++|+++|+++|+|++++..
T Consensus 127 ----~Gi~v~~vd~~~~e~l~~al~---~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p---- 191 (395)
T PRK05967 127 ----LGVEVEYYDPEIGAGIAKLMR---PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATP---- 191 (395)
T ss_pred ----cCeEEEEeCCCCHHHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCc----
Confidence 111233333335677888876 36789999977777777777 999999999999999999999721
Q ss_pred Cccccc--cCCCcchhhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 234 GGAQEY--FGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 234 ~~~~~~--~~~~~d~~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
..+.. +|.+.-+.+.+|.++| | ...|+++.+++.++.+... ........+|..+......++-+ .-..++
T Consensus 192 -~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~---~~~~G~~~~p~da~l~~rgl~Tl--~lR~~~ 265 (395)
T PRK05967 192 -LYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEA---HGTLGLCAGPDDTYQILRGLRTM--GIRLEH 265 (395)
T ss_pred -eecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHH---HHHcCCCCCHHHHHHHHcCcccH--HHHHHH
Confidence 11222 3444335589999986 3 6678777777766555421 11112345666666555554433 233455
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC-ce---------EEeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~----~~~~-~~---------~~~~~g~~~~~~~~ 346 (411)
..+++..+.+.|++... .||. .. ...+.|.++.|++.
T Consensus 266 ~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK05967 266 HRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLA 316 (395)
T ss_pred HHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 66666666677665410 1111 00 12356788999985
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-14 Score=133.23 Aligned_cols=312 Identities=16% Similarity=0.090 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh
Q 015230 55 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 134 (411)
Q Consensus 55 ~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 134 (411)
++.++++.+.+..+... ......++.+.+++.++ .++.++++||++|+..++... ...+++.|++..++|++.. .
T Consensus 10 ~~~~~~v~~~~~~~~~~--~g~~~~~le~~la~~~g-~~~~v~~~sgt~al~~~l~al-~~~~Gd~Viv~~~~~~~~~-~ 84 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT--QGPTVPAFEEALAEYVG-AKYAVAFNSATSALHIACLAL-GVGPGDRVWTTPITFVATA-N 84 (380)
T ss_pred HHHHHHHHHHHhcCCcc--CChhHHHHHHHHHHHHC-CCeEEEEcCHHHHHHHHHHHc-CCCCCCEEEeCCcchHHHH-H
Confidence 45577888888774321 22334566666666664 456677789999999999743 2446788999888887653 3
Q ss_pred hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 135 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
+....|..+..++........ |++++++.+++.+ .++++|++.. ..|...+ +++|.++|
T Consensus 85 ~~~~~G~~~~~~~~~~~~~~~-------------d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~~~i~~l~ 144 (380)
T TIGR03588 85 CALYCGAKVDFVDIDPDTGNI-------------DEDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----MQAIAALA 144 (380)
T ss_pred HHHHcCCEEEEEecCCCcCCc-------------CHHHHHHHhhcccCCCceEEEEeC---CCCccCC----HHHHHHHH
Confidence 334445544444332111111 8899999987421 2456666432 3566666 99999999
Q ss_pred HHhCCEEEEeccccccccccCccccccCC--Ccchhh--hh--hhccCCcccccccc-cHHHHHHhcCC---CC------
Q 015230 214 KENGALLIFDEVMTGFRLAYGGAQEYFGV--TPDLTT--LG--KIIGGGLPVGAYGG-RRDIMEMVAPA---GP------ 277 (411)
Q Consensus 214 ~~~~~~li~De~~~g~~~g~~~~~~~~~~--~~d~~~--~s--K~~~~G~~~g~~~~-~~~~~~~~~~~---~~------ 277 (411)
++||++||+|++|+- |..+.....+. .-|+++ ++ |.++.| ..|+++. ++++.+.++.. ..
T Consensus 145 ~~~~~~lI~D~a~a~---g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~ 220 (380)
T TIGR03588 145 KKHGLKIIEDASHAL---GAEYGGKPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLL 220 (380)
T ss_pred HHcCCEEEEECCCcc---cCccCCEeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCccc
Confidence 999999999999971 11111112222 235554 43 888743 3555544 46666554310 00
Q ss_pred ---------c----ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeec-ceEE
Q 015230 278 ---------M----YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYIS-GMFG 342 (411)
Q Consensus 278 ---------~----~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g-~~~~ 342 (411)
. ..+..+..+.+..+.+...|+.+ ++..++-+++.+++.+.|.++..-.+..... .... .++.
T Consensus 221 ~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
T TIGR03588 221 FEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYP 298 (380)
T ss_pred ccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEE
Confidence 0 01112344556666666666554 5566777888888888887652100110000 0111 1222
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------------------------cceeee--cCCCHH
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------------------EAGFTS--LAHSSD 395 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------------------------~~~~~~--~~~t~~ 395 (411)
+.+... .....+++.+.|.++||.+..... ..+++| ...|++
T Consensus 299 i~~~~~-----------~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~ 367 (380)
T TIGR03588 299 ILLDQE-----------FGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLE 367 (380)
T ss_pred EEECCc-----------CCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHH
Confidence 222110 011237889999999998753210 114444 456899
Q ss_pred HHHHHHHHHHHHH
Q 015230 396 DIQHTITAAEKVL 408 (411)
Q Consensus 396 ~i~~~i~~l~~~~ 408 (411)
|++.+++.|++++
T Consensus 368 dv~~i~~~l~~~~ 380 (380)
T TIGR03588 368 QQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=138.33 Aligned_cols=228 Identities=14% Similarity=0.065 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
.++....++.+.+++.++..+.+++++|+++++..++..+ ..+++.|++..++|.+. ..++...|..+.+++.....
T Consensus 56 ~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al--~~~gd~Vlv~~~~h~s~-~~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 56 DPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAV--CGPGDKILIDRNCHKSV-INGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred CCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHc--CCCCCEEEEeCCchHHH-HHHHHHCCCEEEEecCccCc
Confidence 4566777888888888864444445999999999888742 44667777777776554 34445555544443322111
Q ss_pred C--CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 153 G--VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 153 ~--~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
. ... .-|++++++.+++++ +++++++... +..|...+ +++|.++|++||+++++||+|...
T Consensus 133 ~~~~~~----------~i~~~~l~~~l~~~~-~~k~v~l~~p-~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~ 196 (294)
T cd00615 133 YYGIAG----------GIPPETFKKALIEHP-DAKAAVITNP-TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHF 196 (294)
T ss_pred ccCcCC----------CCCHHHHHHHHHhCC-CceEEEEECC-CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhh
Confidence 1 100 118999999997643 3454444432 34788888 999999999999999999999633
Q ss_pred ccccCcc--ccccCCCcchhhhhhhccCCcccccc-cccHHH--HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-
Q 015230 230 RLAYGGA--QEYFGVTPDLTTLGKIIGGGLPVGAY-GGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE- 303 (411)
Q Consensus 230 ~~g~~~~--~~~~~~~~d~~~~sK~~~~G~~~g~~-~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~- 303 (411)
..+.... ....+.+.-+.|++|+++ |++.|++ ..+.+. .+.+.. ......+.+++.+.+++...+++.+..
T Consensus 197 ~~~~~~~~~~~~~~~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~--~~~~~~ttsps~~~~asl~~a~~~~~~~ 273 (294)
T cd00615 197 RFHPILPSSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNE--ALNLHQSTSPSYLILASLDVARAMMALE 273 (294)
T ss_pred ccCcccCcchhhcCCcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHH--HHHHHCCCCcHHHHHHHHHHHHHHHHHH
Confidence 2221111 111233222458899874 5565444 443321 122221 111222445566666666666665533
Q ss_pred -CChHHHHHHHHHHHHHHHH
Q 015230 304 -PGTYEYLNKITGELTQGII 322 (411)
Q Consensus 304 -~~~~~~~~~~~~~~~~~l~ 322 (411)
+++.++..++.++++++|+
T Consensus 274 g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 274 GKELVEELIELALYARQEIN 293 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 5566777777777777664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=136.87 Aligned_cols=262 Identities=13% Similarity=0.034 Sum_probs=159.4
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 49 IIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 49 ~~g~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
.+.+.+.+-.+++.+.+..+..|+ ...+..+++.+.+++..+ ...++.++||+.|+.+++..+ ..+++.||+..+.
T Consensus 33 t~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg-~~~av~~~SG~aAi~~al~al--l~~GD~VI~~~~~ 109 (432)
T PRK06702 33 TYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEG-GVGAVATASGQAAIMLAVLNI--CSSGDHLLCSSTV 109 (432)
T ss_pred ceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHh--cCCCCEEEECCCc
Confidence 344444555555555444322222 114556788888888874 456788999999999999743 4567899999888
Q ss_pred cCCCchhhhh-hcCCCCcccCCCCCCCCCCCCCCceeecCCC-CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHH
Q 015230 128 YHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 205 (411)
Q Consensus 128 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~ 205 (411)
|.+....... +... +..+..+..+ |+++++++++ +++++|++|...|+.+.+.+
T Consensus 110 Y~~T~~~~~~~l~~~-----------------Gi~v~~vd~~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~D---- 165 (432)
T PRK06702 110 YGGTFNLFGVSLRKL-----------------GIDVTFFNPNLTADEIVALAN---DKTKLVYAESLGNPAMNVLN---- 165 (432)
T ss_pred hHHHHHHHHHHHHHC-----------------CCEEEEECCCCCHHHHHHhCC---cCCeEEEEEcCCCccccccC----
Confidence 8865443211 1111 1223333332 8899999887 36788889987777888888
Q ss_pred HHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcc--hhhhhhhccC-Ccccccc-ccc----------HHHHH-
Q 015230 206 LNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPD--LTTLGKIIGG-GLPVGAY-GGR----------RDIME- 270 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d--~~~~sK~~~~-G~~~g~~-~~~----------~~~~~- 270 (411)
+++|.++|++||+++|+|++++ .++....+.+..| +.|+||.++| +.-+|.+ +.. ..+++
T Consensus 166 i~~I~~iA~~~gi~livD~T~~-----tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~ 240 (432)
T PRK06702 166 FKEFSDAAKELEVPFIVDNTLA-----TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEP 240 (432)
T ss_pred HHHHHHHHHHcCCEEEEECCCC-----chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccc
Confidence 9999999999999999999985 2233333333445 5589998875 2223322 211 11110
Q ss_pred --------------------HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH----
Q 015230 271 --------------------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK---- 326 (411)
Q Consensus 271 --------------------~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 326 (411)
.... ..........+|+.+..+...|+.+ +...++..++...+.+.|++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~~p~V~~V 316 (432)
T PRK06702 241 DPSYHGVSYVQNFGAAAYIVKARV--QLLRDYGNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLADHERIEWV 316 (432)
T ss_pred cccccccchhhccchhhHHHHHHH--HHHHHccCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 0000 0001123477888888777776543 44456667788888787776521
Q ss_pred hcCCc-e---------EE-eeecceEEEEEe
Q 015230 327 KAGHA-I---------CG-GYISGMFGFFFT 346 (411)
Q Consensus 327 ~~~~~-~---------~~-~~~g~~~~~~~~ 346 (411)
.+|.. . .. .+.|.++.|++.
T Consensus 317 ~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~ 347 (432)
T PRK06702 317 NYPGLDSNENYSLAQKYLKKGASGVLTFGIK 347 (432)
T ss_pred ECCCCCCCccHHHHHHhCcCCCceEEEEEec
Confidence 11110 0 11 356788899884
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-14 Score=132.97 Aligned_cols=299 Identities=11% Similarity=0.012 Sum_probs=177.1
Q ss_pred CHHHHHHHHHHHhhCCC--CCEEEEeCChH-HHHHHHHHHHHhcc-CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-C
Q 015230 75 CLLENVLAEMVISAVPS--IEMVRFVNSGT-EACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P 149 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~--~~~v~~~~~g~-~a~~~al~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~ 149 (411)
..+..++.+++.+.++- ....+++++|| .++.+++..++... +++.||+...+ |.....+....|..++.++. .
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t-h~S~~kAi~~~G~~pv~Vd~~~ 182 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID-QKSCIKAISTAGFEPRVIETVL 182 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC-hHHHHHHHHHcCCeEEEeeeee
Confidence 34456777777777762 24799999999 68888776543222 35677777766 55666667777776665442 1
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g 228 (411)
+...+.. |+++++++++... ..+.+++.+|....+|...+ +++|.++|++||+++|+|++|+.
T Consensus 183 d~~~~~i------------D~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg~ 246 (444)
T TIGR03531 183 DGDELTT------------DVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNAYGL 246 (444)
T ss_pred cCcCCCc------------CHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECcCcC
Confidence 1112211 8999999998533 34555665555333344445 99999999999999999999973
Q ss_pred c--ccccCccccccCC-Ccchh--hhhhhccC-Ccccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH
Q 015230 229 F--RLAYGGAQEYFGV-TPDLT--TLGKIIGG-GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301 (411)
Q Consensus 229 ~--~~g~~~~~~~~~~-~~d~~--~~sK~~~~-G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~ 301 (411)
. ...... ...... ..|++ +++|.+.. |. .|.+.. ++++++.+... +.+ .. .+..++.+...++..-
T Consensus 247 ~~~~~~~~~-~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~---y~g-~~-~~s~~~~~~~~ll~~G 319 (444)
T TIGR03531 247 QSNKYMELI-NKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKS---YPG-RA-SASPSLDVLITLLSLG 319 (444)
T ss_pred cChhhhhhh-hccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHh---ccC-CC-CChHHHHHHHHHHHhC
Confidence 2 111110 000111 12443 57898874 43 334445 67777777632 222 11 2223444444444432
Q ss_pred hc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe--
Q 015230 302 KE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV-- 376 (411)
Q Consensus 302 ~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi-- 376 (411)
.+ ++++++..++.+++.+.|+++..+++.... ++..-.-+.+.+.... +.+...+...|..++|
T Consensus 320 ~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-----------~~~~~~~g~~l~~~~v~g 388 (444)
T TIGR03531 320 SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-----------GKDPTMLGSMLYSRRVTG 388 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-----------ccCHHHHHHHHHhCCCCC
Confidence 23 778888999999999999998777664322 1111112223222110 1224688888888866
Q ss_pred --EeccCC-----------Ccc---------eee--ecCCCHHHHHHHHHHHHHHH
Q 015230 377 --YFAPSQ-----------FEA---------GFT--SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 377 --~v~~~~-----------~~~---------~~~--~~~~t~~~i~~~i~~l~~~~ 408 (411)
.|.++. ++. +.. ...++++|+|.++++|++++
T Consensus 389 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 389 PRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred ceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 233332 000 111 36779999999999998763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=129.99 Aligned_cols=316 Identities=16% Similarity=0.126 Sum_probs=180.0
Q ss_pred CcHHHHHHHHHHHHcCCC--CCC----CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeC
Q 015230 53 ADDQVLAALGETMKKGTS--FGA----PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 126 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~--~~~----~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~ 126 (411)
.++++.+++.+.+..+.. +.. ..+....+.+.+++.+ +.++++++++|+.|+..++. .+.+++.||+...
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~-Gae~a~vv~sgtaAl~l~l~---~l~~GdeVIvs~~ 173 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT-GAEDALVVNNNAAAVLLALN---ALAAGKEVIVSRG 173 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH---HhCCCCEEEEcch
Confidence 678899999998876431 111 1333456777777766 55578889999999988885 3457788888766
Q ss_pred CcC--CCc-h--hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC---CCHHHHHHHHHcCCCcEEEEEEcccCCC--C
Q 015230 127 CYH--GHA-D--PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN--S 196 (411)
Q Consensus 127 ~~~--~~~-~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~~~~~~~~~vi~~~~~~~--~ 196 (411)
.+. +.. . ......|.. +..+.. .++++++++++ +++++++++...|. .
T Consensus 174 e~~~~ggs~~i~~~~~~~G~~-------------------l~~v~~~~~t~~~dle~aI~---~~TklV~~vh~sN~~i~ 231 (464)
T PRK04311 174 ELVEIGGAFRIPDVMRQAGAR-------------------LVEVGTTNRTHLRDYEQAIN---ENTALLLKVHTSNYRIE 231 (464)
T ss_pred hhhhcCcchhhHHHHHHCCcE-------------------EEEECCCCCCCHHHHHHhcC---ccCeEEEEEcCCCcccc
Confidence 444 111 1 111122222 222221 26788888886 35677776665442 3
Q ss_pred C--ccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc------cCccccccCCCcchhhhh--hhccCCccccccccc
Q 015230 197 G--FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA------YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR 265 (411)
Q Consensus 197 G--~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g------~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~ 265 (411)
| ...+ +++|.++|++||+++|+|....-+ ..+ .....+......|++++| |+++|. -.|+++++
T Consensus 232 G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~ 306 (464)
T PRK04311 232 GFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGK 306 (464)
T ss_pred ccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEc
Confidence 4 3455 999999999999999999964211 111 111122223456777666 999864 27778899
Q ss_pred HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--C------------ChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 266 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--P------------GTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
+++++.+.... ....+...-...++..+.+..+.+ + ...+++++++..+.+.|++.... +..
T Consensus 307 ~~li~~l~~~~---~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~-~~~ 382 (464)
T PRK04311 307 KELIARLKKHP---LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA-AFA 382 (464)
T ss_pred HHHHHHHhhch---hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC-Cee
Confidence 99988776311 111222233344444444443321 1 11256667777777777664210 110
Q ss_pred eEEe------eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc--CeEeccCCCcceee-ecCCCHHHHHHHHH
Q 015230 332 ICGG------YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE--GVYFAPSQFEAGFT-SLAHSSDDIQHTIT 402 (411)
Q Consensus 332 ~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Gi~v~~~~~~~~~~-~~~~t~~~i~~~i~ 402 (411)
..+. |.|.+-...+ +.+.....+.......+.+.|++- .|+.+. ....+.+ +.+..++|++.+++
T Consensus 383 ~~~~~~~~~~gggs~p~~~~-----~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~-~~~~~~ld~r~~~~~~~~~~~~ 456 (464)
T PRK04311 383 VEVVPSFSQVGGGSLPVDRL-----PSAAVTLTPKDRSLEALAARLRLLPPPVIGRI-EDGRLLLDLRTLEEEDEERLAA 456 (464)
T ss_pred EEEEEccCccCCCCCcCCCC-----CeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEE-ECCEEEEEeCcCCHHHHHHHHH
Confidence 1111 1122211111 111111111222347888888874 576653 3345666 56778999999999
Q ss_pred HHHHHHH
Q 015230 403 AAEKVLR 409 (411)
Q Consensus 403 ~l~~~~~ 409 (411)
+|.+++.
T Consensus 457 ~~~~~~~ 463 (464)
T PRK04311 457 ALLEALN 463 (464)
T ss_pred HHHHHhh
Confidence 9998764
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=135.11 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
....+++.+.+++..+.. ..+.+++|+.|+..++... ..+++.|++.+..|++.......+..
T Consensus 46 ~p~~~~lE~~la~leg~~-~~v~~ssG~~Ai~~~l~al--l~~Gd~Vv~~~~~y~~t~~~~~~l~~-------------- 108 (397)
T PRK05939 46 TPTTAALEAKITKMEGGV-GTVCFATGMAAIAAVFLTL--LRAGDHLVSSQFLFGNTNSLFGTLRG-------------- 108 (397)
T ss_pred CHHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHH--cCCCCEEEECCCccccHHHHHHHHHh--------------
Confidence 455678888888887544 4566667899999888643 45667888887777653321111110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
.+..+..++..|++++++.++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+ .+..
T Consensus 109 ---~G~~v~~v~~~d~e~l~~~l~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a---~~~~ 175 (397)
T PRK05939 109 ---LGVEVTMVDATDVQNVAAAIR---PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMT---SPWL 175 (397)
T ss_pred ---cCCEEEEECCCCHHHHHHhCC---CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcc---cccc
Confidence 122344445558899998886 46788999988888898877 9999999999999999999996 1111
Q ss_pred ccccccCCCcchhhhhhhccC-Ccccccccc
Q 015230 235 GAQEYFGVTPDLTTLGKIIGG-GLPVGAYGG 264 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~-G~~~g~~~~ 264 (411)
+....+|.+..+.+++|.++| |.++|+++.
T Consensus 176 ~~~~~~gaDivv~S~sK~~~g~g~~igg~v~ 206 (397)
T PRK05939 176 FRPKDVGASLVINSLSKYIAGHGNALGGAVT 206 (397)
T ss_pred cCccccCCEEEEecCeecccCCCCeEEEEEe
Confidence 111112333335589999996 788888755
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-13 Score=127.11 Aligned_cols=291 Identities=13% Similarity=0.022 Sum_probs=184.6
Q ss_pred CCHHHHHHHHHHHhhCC-CCC--EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC
Q 015230 74 PCLLENVLAEMVISAVP-SIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 150 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~-~~~--~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 150 (411)
..+.+.++.+|+++.++ +.+ .-++|+||||++..||..+|....+ .+++.+..-|....-++...|-+++.++...
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~-~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~ 209 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDTLV 209 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCC-cEEEEcCCccHHHHHHHHhcCCcceEeccCC
Confidence 35678899999999997 332 4689999999999999998876443 3666677777777777777777776665532
Q ss_pred CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCC-----EEEEecc
Q 015230 151 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA-----LLIFDEV 225 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~-----~li~De~ 225 (411)
.... |+++|++.+.+...++.+|+.+-...+.|.+-| +++|.++|++||+ ++++|.+
T Consensus 210 ~g~m--------------D~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA 271 (470)
T PLN02263 210 SGEI--------------DCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGA 271 (470)
T ss_pred CCcC--------------cHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEecc
Confidence 2222 899999999875445777777777777899988 9999999999997 9999999
Q ss_pred cccc-ccc--cCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccc--cCCCCC--HHHHHHHHH
Q 015230 226 MTGF-RLA--YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQA--GTLSGN--PLAMTAGIH 296 (411)
Q Consensus 226 ~~g~-~~g--~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~--~t~~~~--~~~~a~~~~ 296 (411)
+.|+ .+- ..-.++ +....|-+ ..-|+++..++.|.+..++..++.+.....++.. .+..++ .........
T Consensus 272 ~GG~~lPf~~~~~~~d-f~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~ 350 (470)
T PLN02263 272 LFGLMMPFVKRAPKVT-FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 350 (470)
T ss_pred chhhHhhhcccccccC-CCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence 9887 311 100011 01113333 3459888777788887776655444321111100 011111 112233344
Q ss_pred HHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH
Q 015230 297 TLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373 (411)
Q Consensus 297 ~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 373 (411)
.++.+.. .+..++..++++++.++|++. ++..-..+..+.+.|..+ .. . ...
T Consensus 351 ~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~----g~~~~~~p~s~~V~f~~p-------------~~----~----~~~ 405 (470)
T PLN02263 351 TLNRKGYRGFQKEVQKCLRNAHYLKDRLREA----GISAMLNELSSTVVFERP-------------KD----E----EFV 405 (470)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCceEEEEecC-------------ch----H----Hhh
Confidence 4444433 455566677777777877765 433333344455554321 11 1 123
Q ss_pred cCeEeccCCCc-ceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 374 EGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 374 ~Gi~v~~~~~~-~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+|-.+...+.. ++.+...++.+.+|++++-|++..+
T Consensus 406 ~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 406 RRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred cceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 56666554321 2444566789999999999987654
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-14 Score=133.09 Aligned_cols=309 Identities=12% Similarity=-0.020 Sum_probs=176.0
Q ss_pred CcHH-HHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC--CCCEEEEeC-ChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 53 ADDQ-VLAALGETMKKGTSFG-APCLLENVLAEMVISAVP--SIEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~-v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~~v~~~~-~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
.+|+ +++++.+......+.. -..+..++..+.+++.++ ..++|+|+. |||++++.++... ..+++.+++..+
T Consensus 23 ~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l--~~~~~~~vi~~g- 99 (378)
T PRK03080 23 KRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL--LGARRVDHLAWE- 99 (378)
T ss_pred CChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc--CCCCcceEEEeC-
Confidence 4566 8888875533211111 124556777777888886 245788885 9999999999753 222333444444
Q ss_pred cCCCchhh-h-hhcCC-CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 128 YHGHADPF-L-VKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 128 ~~~~~~~~-~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.|+..... + ...|. ++..+..++.... |++++ +. ++.|.+..+.+.+|.+.|
T Consensus 100 ~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~--------------d~~~i----~~----~~~V~~~h~~t~tG~~~p--- 154 (378)
T PRK03080 100 SFGSKWATDVVKQLKLEDPRVLEADYGSLP--------------DLSAV----DF----DRDVVFTWNGTTTGVRVP--- 154 (378)
T ss_pred HHHHHHHHHHHhhcCCCCceEeccCCCCCC--------------CHhhc----CC----CCCEEEEecCCccceecc---
Confidence 44432221 1 11233 3333322211111 44442 21 335777788888999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCCC----
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP---- 277 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~---- 277 (411)
+++|.+ ++||+++++|.+|+ .| ....++ . .|++ +..|++++..-+|+++.+++.++.+.+...
T Consensus 155 -i~~I~~--~~~g~~~vVDa~qs---~G~~pidv~--~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~ 224 (378)
T PRK03080 155 -VARWIG--ADREGLTICDATSA---AFALPLDWS--K--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPI 224 (378)
T ss_pred -chhhcc--ccCCCeEEEecccc---cccCCCCHH--H--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCC
Confidence 999988 88999999999997 22 112222 2 2544 667999752228888999988877654210
Q ss_pred ---------------cccccC-CCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-
Q 015230 278 ---------------MYQAGT-LSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY- 336 (411)
Q Consensus 278 ---------------~~~~~t-~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 336 (411)
.+...+ .+++..+..+..++++.+.+ ++..++.+++.+++++.|+++............
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 304 (378)
T PRK03080 225 PKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATR 304 (378)
T ss_pred chhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCcccc
Confidence 011112 23444555555677776654 334455666666666666654210001001111
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----Ccceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.++.|.+.+. ..... ..+...+.++|+++..++ .+.+|+ ....|++|++++++.|++++++
T Consensus 305 s~~i~~~~~~~~----------~~~~~-~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 373 (378)
T PRK03080 305 SNTSVTLDFVDA----------QAAVD-AAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFER 373 (378)
T ss_pred CccEEEEEcCCc----------hHHHH-HHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 224555554220 00122 235566667788887653 245777 4678999999999999998775
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=133.39 Aligned_cols=237 Identities=11% Similarity=0.042 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
....+++.+.+++..+..+ .+.+++|+.|+..++. ...+++.|++..+.|++.+........
T Consensus 53 ~p~~~~le~~lA~l~g~~~-~v~~~sG~~ai~~~l~---~l~~Gd~Vlv~~~~y~~~~~~~~~~~~-------------- 114 (390)
T PRK08064 53 NPTREALEDIIAELEGGTK-GFAFASGMAAISTAFL---LLSKGDHVLISEDVYGGTYRMITEVLS-------------- 114 (390)
T ss_pred ChhHHHHHHHHHHHhCCCC-eEEECCHHHHHHHHHH---HhCCCCEEEEccCccchHHHHHHHHHH--------------
Confidence 4556788888888886444 5566788999988775 345678899999988865543221110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
..+..+..++..|++++++.++ +++++|+++..+|++|.+.+ +++|.++|+++|+++|+|++|+.+.....
T Consensus 115 --~~G~~v~~v~~~d~~~l~~~l~---~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~~~ 185 (390)
T PRK08064 115 --RFGIEHTFVDMTNLEEVAQNIK---PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPLLQKP 185 (390)
T ss_pred --HcCCEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcccccCc
Confidence 0112334444457888888776 35788888888888898888 99999999999999999999973211111
Q ss_pred ccccccCCCcchhhhhhhccC--Ccccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
. .++.+.-+.+++|.++| |...|++++ ++++++.+.... .......++..+......++.+ ....++..
T Consensus 186 --~-~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~---~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~ 257 (390)
T PRK08064 186 --L-DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQ---NSFGAVLGVQDCWLVLRGLKTL--HVRLEHSS 257 (390)
T ss_pred --h-hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHcccCcH--HHHHHHHH
Confidence 1 12333334578999974 344566655 567777765311 1112233344444333222211 33445556
Q ss_pred HHHHHHHHHHHHHHH----hcCC----------ceEEeeecceEEEEEe
Q 015230 312 KITGELTQGIIDAGK----KAGH----------AICGGYISGMFGFFFT 346 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~----~~~~----------~~~~~~~g~~~~~~~~ 346 (411)
++...+.+.|++... .+|. .....+.|.++.|++.
T Consensus 258 ~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (390)
T PRK08064 258 ETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ 306 (390)
T ss_pred HHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 666666666665420 0010 0123456788899883
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-14 Score=132.21 Aligned_cols=216 Identities=17% Similarity=0.102 Sum_probs=134.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.+.....+.+.+++..+. +..+++++|+.++..++. ...++++|++.++.|.+.+........
T Consensus 48 ~~p~~~~Le~~lA~l~g~-~~~~~~~sG~aai~~~~~---~l~~Gd~Viv~~~~y~~~~~~~~~~~~------------- 110 (377)
T PRK07671 48 GNPTRAALEELIAVLEGG-HAGFAFGSGMAAITAVMM---LFSSGDHVILTDDVYGGTYRVMTKVLN------------- 110 (377)
T ss_pred CChHHHHHHHHHHHHhCC-CceEEeCCHHHHHHHHHH---HhCCCCEEEECCCccchHHHHHHHHHh-------------
Confidence 456678888888888854 445667788888876654 345678899999888765433221110
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
..+.++..++..|+++++++++ +++++|+++..+|++|...+ +++|.++|+++|+++|+|++|+....+.
T Consensus 111 ---~~G~~v~~v~~~d~~~l~~ai~---~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~~~~~ 180 (377)
T PRK07671 111 ---RFGIEHTFVDTSNLEEVEEAIR---PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTPYWQS 180 (377)
T ss_pred ---cCCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 0112333444458899988886 35678888777777788877 9999999999999999999996321111
Q ss_pred CccccccCCCcchhhhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
.. .++.+.-+.|++|+++| + .-.|++++ ++++++.+.... .......++..+..+...++.+ ....++.
T Consensus 181 p~---~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~---~~~g~~~~~~~a~l~~~~l~tl--~~R~~~~ 252 (377)
T PRK07671 181 PI---SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ---NSTGGILGPQDSWLLLRGLKTL--GIRMEEH 252 (377)
T ss_pred hh---hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHH---HhhcCCCCHHHHHHHHcCcChH--HHHHHHH
Confidence 11 12222234589999985 2 23455554 566766665211 1112334556555555444433 2345566
Q ss_pred HHHHHHHHHHHHHH
Q 015230 311 NKITGELTQGIIDA 324 (411)
Q Consensus 311 ~~~~~~~~~~l~~~ 324 (411)
.++...+.+.|++.
T Consensus 253 ~~na~~la~~L~~~ 266 (377)
T PRK07671 253 ETNSRAIAEFLNNH 266 (377)
T ss_pred HHHHHHHHHHHHcC
Confidence 67777777777654
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-14 Score=131.73 Aligned_cols=169 Identities=16% Similarity=0.130 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
......|.+.+++..+ .+..++++||+.|+.+++. .+.++++|++.++.|++...........
T Consensus 49 ~p~~~~Le~~la~l~g-~~~al~~~SG~~Al~~~l~---~l~pGd~Vi~~~~~y~~t~~~~~~~~~~------------- 111 (380)
T PRK06176 49 NPTRFALEELIADLEG-GVKGFAFASGLAGIHAVFS---LFQSGDHVLLGDDVYGGTFRLFDKVLVK------------- 111 (380)
T ss_pred ChhHHHHHHHHHHHhC-CCCEEEECCHHHHHHHHHH---HcCCCCEEEEcCCChhHHHHHHHHHHHh-------------
Confidence 4556788888888875 4455777889999987664 3456788999888887654222111100
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
.+.++..++..|++++++.++ +++++|++|..+|++|.+.+ +++|.++|++||+++|+|++|+....+..
T Consensus 112 ---~gi~v~~vd~~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~~~~~p 181 (380)
T PRK06176 112 ---NGLSCTIIDTSDLSQIKKAIK---PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATPYYQNP 181 (380)
T ss_pred ---cCeEEEEcCCCCHHHHHHhcC---cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCccccccCCc
Confidence 112233344448899988876 36788888887888888888 99999999999999999999973211111
Q ss_pred ccccccCCCcchhhhhhhccC-C-cccccccc-cHHHHHHhc
Q 015230 235 GAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGG-RRDIMEMVA 273 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~-~~~~~~~~~ 273 (411)
. .++.+.-+.|++|.++| | .-.|+++. ++++.+.+.
T Consensus 182 ~---~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 182 L---LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA 220 (380)
T ss_pred c---ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence 1 12333334478899985 4 33555665 455555554
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-13 Score=115.88 Aligned_cols=331 Identities=16% Similarity=0.088 Sum_probs=208.6
Q ss_pred ecCCCEEEeccCCccccccCCCcHHHHHHHHHH-HHc---CC----C--CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCC
Q 015230 32 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGET-MKK---GT----S--FGAPCLLENVLAEMVISAVP-SIEMVRFVNS 100 (411)
Q Consensus 32 ~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~-l~~---~~----~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~ 100 (411)
+.+|-.|+| + |++|..++.+.+...+. .+. .. . -..+-..-+.+..+++.+.+ ...++..++|
T Consensus 28 lp~~viyLd---g---nSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dt 101 (407)
T COG3844 28 LPGGVIYLD---G---NSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDT 101 (407)
T ss_pred CCCCeEEee---c---cccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCC
Confidence 355566666 3 56776553443333332 222 10 0 11234555778888888888 7889999998
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCC-cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGC-YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
.+--+...|..+.....++.||+++.. |+.....+.-... +..+ +.++... .++.++++.+.
T Consensus 102 ts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~--~~~~------------~~~~~~~--~~P~~~~~~~~- 164 (407)
T COG3844 102 TSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLAD--LLGI------------GYDLEGV--IAPRALEEAIT- 164 (407)
T ss_pred cchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhh--hhcc------------cccceee--eChHHHHHhhc-
Confidence 887777777766565656777777664 4432222110000 0000 0011111 14667777776
Q ss_pred CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCC-c
Q 015230 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGG-L 257 (411)
Q Consensus 180 ~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G-~ 257 (411)
++++.|+++.++.-+|.+.+ +.+|-+++++||++++.|-+|+ .|. ..-...+|.+--+.|.-|.++|| -
T Consensus 165 --dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs---aGavp~~Lh~~gaDfaigcsyKYLNgGPG 235 (407)
T COG3844 165 --DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS---AGAVPVDLHAAGADFAIGCSYKYLNGGPG 235 (407)
T ss_pred --cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc---cCCcceeecccCCCeeeeeeceeccCCCC
Confidence 68999999999999999999 9999999999999999999997 231 11222234444577888999865 2
Q ss_pred ccccccccHHHHHHhcCCCCcccc--------------------cCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHH
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQA--------------------GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKIT 314 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~--------------------~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~ 314 (411)
-.+++.+.++..+...+....+.+ -.-+.+.+++++...+|++..+ .+++++...+.
T Consensus 236 apa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLT 315 (407)
T COG3844 236 APAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALT 315 (407)
T ss_pred CceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHH
Confidence 244554444333332221111111 0114456777777778887766 56677777777
Q ss_pred HHHHHHHHHHHHhcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--
Q 015230 315 GELTQGIIDAGKKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT-- 388 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~-- 388 (411)
.++.+.++.....+++-. .-..+|..+.+... .+.++.+.|.++||+...-..+.+|+
T Consensus 316 d~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp----------------~~~~V~qaLi~rGVigD~R~P~vlRfgf 379 (407)
T COG3844 316 DYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP----------------HGYQVMQALIDRGVIGDFREPDVLRFGF 379 (407)
T ss_pred HHHHHHHHhccccCCcEEeccchhhhccceeeEecC----------------cHHHHHHHHHHcCccccccCCCeeeecC
Confidence 777777776644443211 11235666666553 24789999999999988777667777
Q ss_pred -ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 -SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|++.+..|+=.+++.|.++++.
T Consensus 380 tPlY~~~~DVw~AV~~L~evL~t 402 (407)
T COG3844 380 TPLYVSFVDVWDAVDALEEVLDT 402 (407)
T ss_pred ccceechhHHHHHHHHHHHHHHh
Confidence 7899999999999999999875
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-14 Score=131.58 Aligned_cols=236 Identities=11% Similarity=0.008 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...|.+.++++. +.+..++++||+.|+.+++... ..+++.|++....|.+..........
T Consensus 61 nPt~~~le~~la~LE-g~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~-------------- 123 (395)
T PRK08114 61 TLTHFSLQEAMCELE-GGAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILS-------------- 123 (395)
T ss_pred ChhHHHHHHHHHHHh-CCCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHH--------------
Confidence 455677888888776 5667888888999999988643 45677888877777664433211110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC--CEEEEeccccccccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGFRLA 232 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~--~~li~De~~~g~~~g 232 (411)
..+.++..++..|.+++++.++ +++++|++|.+.|+.|.+.+ +++|.++|++++ +++++|.+++ .+
T Consensus 124 --~~Gi~v~~vd~~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a---~p 191 (395)
T PRK08114 124 --KLGVTTTWFDPLIGADIAKLIQ---PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA---AG 191 (395)
T ss_pred --hcCcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc---cc
Confidence 0122445555568899998886 36899999999999999999 999999999985 9999999997 33
Q ss_pred cCccccccCCCcch--hhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 233 YGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 233 ~~~~~~~~~~~~d~--~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
.. ++...+..|+ .+.+|+++| | .-.|.++.+++.++.+.... .......+|..+......++-+ .-..+
T Consensus 192 ~~--~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~---~~~G~~~~p~~a~l~~rgl~TL--~lR~~ 264 (395)
T PRK08114 192 VL--FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS---YLMGQMVDADTAYMTSRGLRTL--GVRLR 264 (395)
T ss_pred cc--cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH---HhccCCCCHHHHHHHHcCCCcH--HHHHH
Confidence 22 3333334454 478899997 4 55776677776665554211 1112245666666555544322 33446
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCC-c---------eEEeeecceEEEEEe
Q 015230 309 YLNKITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFT 346 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~----~~~~-~---------~~~~~~g~~~~~~~~ 346 (411)
+..+++..+.+.|++... .||. . ....+.|.++.|++.
T Consensus 265 ~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK08114 265 QHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK 316 (395)
T ss_pred HHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence 677777777777776521 1111 0 112356889999985
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-14 Score=130.78 Aligned_cols=233 Identities=17% Similarity=0.139 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...+.+.++++. +.+.++.++||..|+.+++... ...+++|++....|++.........
T Consensus 54 nPt~~~le~~la~Le-~g~~a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~~~l--------------- 115 (386)
T PF01053_consen 54 NPTVRALEQRLAALE-GGEDALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLEELL--------------- 115 (386)
T ss_dssp -HHHHHHHHHHHHHH-T-SEEEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHHHCH---------------
T ss_pred cccHHHHHHHHHHhh-cccceeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhhhhh---------------
Confidence 555678888887776 5578888999999999888643 4457889998888887443322111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC-CEEEEecccccccccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~-~~li~De~~~g~~~g~ 233 (411)
...+..+..++..|+++++++++ +++++|++|+..|+...+.+ +++|+++|+++| +++++|.+.+.
T Consensus 116 -~~~gv~v~~~d~~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at----- 182 (386)
T PF01053_consen 116 -PRFGVEVTFVDPTDLEALEAALR---PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT----- 182 (386)
T ss_dssp -HHTTSEEEEESTTSHHHHHHHHC---TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH-----
T ss_pred -cccCcEEEEeCchhHHHHHhhcc---ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccc-----
Confidence 11223455566668999999998 47999999999888888888 999999999998 99999999961
Q ss_pred CccccccCCCcc--hhhhhhhccC-C-ccccccccc--HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 234 GGAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGGR--RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 234 ~~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
+..++.+....| +.|.+|.++| | .-.|.++.+ +++.+.+.... ... ....+|..+......++-+ .-..
T Consensus 183 p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~-~~~--G~~~~p~da~ll~rgl~Tl--~~R~ 257 (386)
T PF01053_consen 183 PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR-RLL--GATLSPFDAWLLLRGLRTL--PLRM 257 (386)
T ss_dssp TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH-HHH--T-B--HHHHHHHHHHHTTH--HHHH
T ss_pred eeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh-hhc--CccchHHHHHHHhcCCCcH--HHHH
Confidence 222333333345 4589999986 4 446666654 46666554211 111 2233445444444444322 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceE------------------EeeecceEEEEEec
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTE 347 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~ 347 (411)
++..+++..+.+.|++. |.+.. ..+.|.++.|++.+
T Consensus 258 ~~~~~nA~~lA~~L~~h----p~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~ 311 (386)
T PF01053_consen 258 ERQNENAEALAEFLEEH----PKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG 311 (386)
T ss_dssp HHHHHHHHHHHHHHHTS----TTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred HHHHHHHHHHHHHHHhC----CCCCeEEEcccccccceeeeeecccccCceeEEEecc
Confidence 66667777777777664 33322 22556799999953
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=129.69 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
....+++.+.+++..+ .+..++++||++|+..++... ..++++||+....|++.........
T Consensus 63 ~p~~~~le~~lA~l~g-~~~av~~sSGt~Al~~al~~l--l~~Gd~Vi~~~~~y~~t~~~~~~~l--------------- 124 (433)
T PRK08134 63 NPTVAVLEERVAALEG-GVGAIATASGQAALHLAIATL--MGAGSHIVASSALYGGSHNLLHYTL--------------- 124 (433)
T ss_pred ChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCccHHHHHHHHHHH---------------
Confidence 4556888888888875 345799999999999998753 4467788888888876433221110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
...+..+..++.+|++++++.++ +++++|+++...+++|.+.+ +++|.++|++||+++|+|.+|+ .+..
T Consensus 125 -~~~Gi~v~~vd~~d~~~l~~~i~---~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a---~~~~ 193 (433)
T PRK08134 125 -RRFGIETTFVKPGDIDGWRAAIR---PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT---TPYL 193 (433)
T ss_pred -hhCCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCc---cccc
Confidence 01122445555558999999887 46788999988888999999 9999999999999999999996 2211
Q ss_pred ccccccCCCcch--hhhhhhccC-Ccccccc
Q 015230 235 GAQEYFGVTPDL--TTLGKIIGG-GLPVGAY 262 (411)
Q Consensus 235 ~~~~~~~~~~d~--~~~sK~~~~-G~~~g~~ 262 (411)
........|+ .|.+|.++| |-.+|++
T Consensus 194 --~~pl~~GaD~vv~S~tK~l~g~g~~~gG~ 222 (433)
T PRK08134 194 --LRPFEHGADLVYHSATKFLGGHGTAIGGV 222 (433)
T ss_pred --CCchhcCCCEEEeccccccCCCCCceEEE
Confidence 1111233454 477899986 5445554
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=127.88 Aligned_cols=306 Identities=12% Similarity=0.015 Sum_probs=186.4
Q ss_pred CcHHHHHHHHHHHHcC------C--CCCCCC---HHHHHHHHHHHhhCCC--CCEE-EEeCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKG------T--SFGAPC---LLENVLAEMVISAVPS--IEMV-RFVNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~------~--~~~~~~---~~~~~l~~~l~~~~~~--~~~v-~~~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+++|++|+...+.+. . ...... +..+++.+.+.+.++. ..++ ++++||+.++++++... ..++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl--~~~g 91 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNL--LGGG 91 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhc--CCCC
Confidence 7889999999887542 0 011123 6678888888888862 2345 45578999999998742 2345
Q ss_pred cEEEEEeCCcCCCchhhhhh-cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH-HHHcCCCcEEEEEEcccCCCC
Q 015230 119 ERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~~~~vi~~~~~~~~ 196 (411)
+++++...+..+....-... .|. ...+..+...+.. +..++++ .++ .++++|.+..+.+++
T Consensus 92 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~g~~-------------~~~~~~~~~l~---~~~~~V~~th~eTst 154 (360)
T PRK05355 92 KKADYVDTGSWSKKAIKEAKKYGE-VNVAASSEDDGFT-------------YIPPLDEWQLS---DDAAYVHYTSNETID 154 (360)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-ceEEecccccCCC-------------CCCChhhccCC---CCCCEEEEccCCCcc
Confidence 67777777766654433222 233 2222222112211 2222333 444 256788888888889
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcc-cccccccHHHHHHhcC
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLP-VGAYGGRRDIMEMVAP 274 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~-~g~~~~~~~~~~~~~~ 274 (411)
|+..++ +.+| ||+++++|.+++ .| ....++.++ .-+.+..|+++. + +|.++.++++++.+.+
T Consensus 155 Gv~~~~---i~~i------~g~l~vVDavss---~g~~~idv~~~d--~~~~ssqK~lgP--~Glg~l~~s~~~l~~~~~ 218 (360)
T PRK05355 155 GTEFHE---LPDT------GDVPLVADMSSD---ILSRPIDVSKFG--LIYAGAQKNIGP--AGLTIVIVREDLLGRALP 218 (360)
T ss_pred eEecCc---cccc------CCCcEEEEcCcc---ccCccCCHHHcc--EEEEeccccccC--CceEEEEECHHHHhhccc
Confidence 998731 6665 899999999997 22 222233332 223356699862 3 8888999999888764
Q ss_pred CCCc---------ccccCCCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHhcCCce---EE-eee
Q 015230 275 AGPM---------YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAI---CG-GYI 337 (411)
Q Consensus 275 ~~~~---------~~~~t~~~~~~~~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~ 337 (411)
.... ......+++.....+..++++.+.++ ++.++.+++.+++++.|+++ ++.. .. ...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~----~~~~~~~~~~~rs 294 (360)
T PRK05355 219 SIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS----DFYRNPVAPEDRS 294 (360)
T ss_pred CCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC----CCcccCCChhhcC
Confidence 2110 01113456667777777888877653 44555666666666666665 3211 10 112
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+..+.|.+. ......++.+.+.++|+.+.++. ...+|++ ...|.+|++++++.|++++..
T Consensus 295 ~~v~sf~~~-------------~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 295 RMNVPFTLA-------------DEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CcEEEEEcC-------------ChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 244555542 22233567778889999986653 2457875 566899999999999998753
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=129.59 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
....+.+.+.+++.. +.+..++++||+.|+..++... ..+++.||+....|.+...........
T Consensus 68 ~p~~~~Le~~lA~l~-g~~~av~~sSG~aAi~~al~al--l~~Gd~Vv~~~~~y~~t~~~~~~~l~~------------- 131 (436)
T PRK07812 68 NPTQDVVEQRIAALE-GGVAALLLASGQAAETFAILNL--AGAGDHIVSSPRLYGGTYNLFHYTLPK------------- 131 (436)
T ss_pred CchHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHHH--hCCCCEEEEeCCcchHHHHHHHHHhhc-------------
Confidence 455678888888887 4556788889999999988643 356778888877775533221111000
Q ss_pred CCCCCCceeecC-CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 155 PKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~-~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
.+..+..++ ..|+++++++++ +++++|+++.+.|+.|.+.+ +++|.++|++||+++|+|++++ .+.
T Consensus 132 ---~Gi~v~~vdd~~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a---~~~ 198 (436)
T PRK07812 132 ---LGIEVSFVEDPDDLDAWRAAVR---PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA---TPY 198 (436)
T ss_pred ---CeEEEEEECCCCCHHHHHHhCC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc---ccc
Confidence 111223332 237888888776 46789999999999999999 9999999999999999999996 111
Q ss_pred CccccccCCCcchhhhhhhccC-Ccccccc
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-GLPVGAY 262 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G~~~g~~ 262 (411)
....-.+|.+.-+.|++|.++| |--+|++
T Consensus 199 ~~~pl~~GaDivv~S~tK~lgg~G~~i~G~ 228 (436)
T PRK07812 199 LIRPLEHGADIVVHSATKYLGGHGTAIAGV 228 (436)
T ss_pred cCCchhcCCCEEEEecccccCCCCCeEEEE
Confidence 1100012333334589999985 4334444
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-13 Score=130.33 Aligned_cols=312 Identities=12% Similarity=0.048 Sum_probs=182.9
Q ss_pred CCHHHHHHHHHHHhhCCCCC--------EEEEeCChHHHHHHHHHHHHhcc-------C-CcEEEEEeCCcCCCchhhhh
Q 015230 74 PCLLENVLAEMVISAVPSIE--------MVRFVNSGTEACMGVLRLARAFT-------G-RERIIKFEGCYHGHADPFLV 137 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~--------~v~~~~~g~~a~~~al~~~~~~~-------~-~~~vi~~~~~~~~~~~~~~~ 137 (411)
..+.+.++.+|+++.++-++ .-++|+|||+|+..+|.++|... + +..++..+...|....-++.
T Consensus 120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~ 199 (490)
T PLN02880 120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ 199 (490)
T ss_pred cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence 46888999999999997333 36899999999999998887431 1 23345455555777777777
Q ss_pred hcCCC---CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 138 KAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 138 ~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
..|-+ ++.++......... |+++|++++++. ...+.+|+.+-...++|.+-| +++|.+
T Consensus 200 ~lGlg~~~v~~Vp~d~~~~~~m------------d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~ 263 (490)
T PLN02880 200 IAGIHPENCRLLKTDSSTNYAL------------APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGK 263 (490)
T ss_pred HcCCCHHHEEEeecCCCcCCcC------------CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHH
Confidence 77654 44444432111111 899999999752 234677888877788899999 999999
Q ss_pred HHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCcccccccccH--HHHHHhcCCCCcccc----
Q 015230 212 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGRR--DIMEMVAPAGPMYQA---- 281 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~~g~~~~~~--~~~~~~~~~~~~~~~---- 281 (411)
+|++||+++++|.+|+|+ ...+.+-....++ ..|.+ ..-|++...+..|.+..+. .+...+.....++..
T Consensus 264 i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~ 343 (490)
T PLN02880 264 IAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQ 343 (490)
T ss_pred HHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCcccc
Confidence 999999999999999865 3221111112233 34544 4679998766688876643 223333211111000
Q ss_pred -------cCCC---CCHHHHHHHHHHHHHHhcCChHHHHH---HHHHHHHHHHHHHHHhcCCce-EEeeecceEEEEEec
Q 015230 282 -------GTLS---GNPLAMTAGIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTE 347 (411)
Q Consensus 282 -------~t~~---~~~~~~a~~~~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~ 347 (411)
..++ +-.+........++.+..+.++++++ ++.+++.+.|++. +... .......++.|.+..
T Consensus 344 ~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~----~~~el~~~~~~~iv~Fr~~~ 419 (490)
T PLN02880 344 ANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD----SRFEVVTPRIFSLVCFRLVP 419 (490)
T ss_pred ccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEEEEeC
Confidence 0000 01111122223344444355555555 7777777766554 2221 112234466666643
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcC-eEeccC---CCcceee---ecCCCHHHHHHHHHHHHHHHHh
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~v~~~---~~~~~~~---~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..... ........++.+.|.+.| +++.+. +...+|+ +..+|+++++.+++.|.++..+
T Consensus 420 ~~~~~-----~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 420 PKNNE-----DNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred CCCCh-----hhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 11100 001122345666666664 444433 2223565 4677889999999999887654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-13 Score=134.11 Aligned_cols=300 Identities=16% Similarity=0.143 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhcc-----CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC
Q 015230 76 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 150 (411)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 150 (411)
+...++.+|+++..+-...-++.++|+.|..+++..+|.+. .+..+++.+.+-|++....+...|..+..++..
T Consensus 530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d- 608 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCD- 608 (939)
T ss_pred HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccC-
Confidence 56788999999999623455677788888777776665531 234566777788887777766667666655443
Q ss_pred CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc-c
Q 015230 151 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F 229 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g-~ 229 (411)
..+.. |+++|++.++++.+++++|++...++ .|.+.++ +++|.++|+++|..+++|.++.. .
T Consensus 609 ~~G~i-------------Dle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 609 QDGNI-------------DLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred CCCCc-------------CHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhC
Confidence 22322 89999999987556788888876665 4555432 99999999999999999999951 2
Q ss_pred ccccCccccccCCCcchhhh--hhhcc----CCcc-cccccccHHHHHHhcCCCCc--------------ccccCCCCCH
Q 015230 230 RLAYGGAQEYFGVTPDLTTL--GKIIG----GGLP-VGAYGGRRDIMEMVAPAGPM--------------YQAGTLSGNP 288 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~~--sK~~~----~G~~-~g~~~~~~~~~~~~~~~~~~--------------~~~~t~~~~~ 288 (411)
......-....|++++ .|+|+ +|-| +|.+.+++++...+.. ... ...+.+..+.
T Consensus 672 ----~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg-~~v~~t~d~~greq~Iga~s~~~~g~a 746 (939)
T TIGR00461 672 ----VGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPK-HDVVSMITGIGGSKSIGSVSAAPYGSA 746 (939)
T ss_pred ----CCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCC-CcccccccCCCCccccccccccccCcH
Confidence 0000111234577655 59886 1334 8888888776554431 110 0111123333
Q ss_pred HHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-e--EEEEEecCCCCCcchhcccchH
Q 015230 289 LAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-M--FGFFFTEGPVYNFEDAKKSETT 362 (411)
Q Consensus 289 ~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~ 362 (411)
..+..+...+..+.. ++..+....+.+|+.++|++. ++.... ...+. + +.+++... ....+.
T Consensus 747 ~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~---~~~l~~-~~~~~~~hEfv~~~~~~--------~~~~g~ 814 (939)
T TIGR00461 747 SILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH---YPILFV-GTLKHVAHECILDLRPL--------KAKTGI 814 (939)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc---Cccccc-CCCCceeEEEEEeccch--------hhhcCC
Confidence 444444555565554 344556777888999998763 232221 11122 1 22222110 001123
Q ss_pred HHHHHHHHHHHcCeEeccCCCc---c--eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 363 KFARFYRGMLEEGVYFAPSQFE---A--GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 363 ~~~~~~~~l~~~Gi~v~~~~~~---~--~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
....+.+.|.+.|++.....++ . +++.-..|+++||++++++.++.++
T Consensus 815 ~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e 867 (939)
T TIGR00461 815 EAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEE 867 (939)
T ss_pred CHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999986543321 2 3445677999999999999877554
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-12 Score=126.89 Aligned_cols=307 Identities=16% Similarity=0.061 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHhhCCC--------------CCEEEEeCChHHHHHHHHHHHHhcc--C--------------------
Q 015230 74 PCLLENVLAEMVISAVPS--------------IEMVRFVNSGTEACMGVLRLARAFT--G-------------------- 117 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~--------------~~~v~~~~~g~~a~~~al~~~~~~~--~-------------------- 117 (411)
.++++.++.+|+.+.+++ ...-+||+|||+|+..||..+|... .
T Consensus 127 ~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~ 206 (522)
T TIGR03799 127 FTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYG 206 (522)
T ss_pred hHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhcc
Confidence 368889999999998731 1235889999999999998887531 0
Q ss_pred -CcEEEEEeCCcCCCchhhhhhcCC---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEc
Q 015230 118 -RERIIKFEGCYHGHADPFLVKAGS---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILE 190 (411)
Q Consensus 118 -~~~vi~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~ 190 (411)
++.+|+.+..-|.....+....|. .+..++......+ |+++|++.+++ ....+.+|+..
T Consensus 207 ~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~--------------d~~~L~~~i~~~~~~g~~~~~vvat 272 (522)
T TIGR03799 207 YDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRI--------------DVDALRDKCAELAEQNIKPLAIVGV 272 (522)
T ss_pred CCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcC--------------CHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 123455555555555544444443 2334333222222 89999998874 22234555555
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchhh--hhhhccCCccccccccc-
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGR- 265 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~~--~sK~~~~G~~~g~~~~~- 265 (411)
.++.++|.+.| +++|.++|++||+++++|.+|+|. .....+.....++ ..|.++ .-|++.+...+|.++.+
T Consensus 273 aGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~ 348 (522)
T TIGR03799 273 AGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKD 348 (522)
T ss_pred ecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeC
Confidence 66677899999 999999999999999999999854 2111110001233 356655 45988765557888664
Q ss_pred HHHHHHhcCCCCccc--c------cCC--CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 266 RDIMEMVAPAGPMYQ--A------GTL--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~--~------~t~--~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+...+.+.....+.. + .++ +-+..+ .....+++.+.. +++.++..++.+++.+.|++. +...
T Consensus 349 ~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~----~~~e 423 (522)
T TIGR03799 349 PALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ----PDFE 423 (522)
T ss_pred HHHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeE
Confidence 455555543211110 0 011 111122 123445555443 666677777777777777654 3222
Q ss_pred E-EeeecceEEEEEecCCCCCcchh-------c--ccchHHHHHHHHHHHHcCeEeccC------CC-----cceee---
Q 015230 333 C-GGYISGMFGFFFTEGPVYNFEDA-------K--KSETTKFARFYRGMLEEGVYFAPS------QF-----EAGFT--- 388 (411)
Q Consensus 333 ~-~~~~g~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~l~~~Gi~v~~~------~~-----~~~~~--- 388 (411)
. ..+.-.++.|.+........... . ........++.+.+.+.|...... .+ ..+|+
T Consensus 424 l~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~ 503 (522)
T TIGR03799 424 LVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLA 503 (522)
T ss_pred EecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEec
Confidence 1 12223355565533222110000 0 001223356777777777655331 11 12454
Q ss_pred ecCCCHHHHHHHHHH
Q 015230 389 SLAHSSDDIQHTITA 403 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~ 403 (411)
+..+|+++++.+++.
T Consensus 504 np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 504 NPLTTHEILQDILDE 518 (522)
T ss_pred CCCCCHHHHHHHHHH
Confidence 577899999988764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=124.12 Aligned_cols=310 Identities=14% Similarity=0.123 Sum_probs=173.0
Q ss_pred CcHHHHHHHHHHHHcCCC--C----CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeC
Q 015230 53 ADDQVLAALGETMKKGTS--F----GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 126 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~--~----~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~ 126 (411)
.++++.+++.+.+..... + +........+.+.+++.++ .+..+++++|+.|+..++. .+.+++.||+...
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~g-ae~alvv~sg~aAi~l~l~---~l~~GdeVIvs~~ 168 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTG-AEDALVVNNNAAAVLLALN---TLAKGKEVIVSRG 168 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHH---HhCCcCEEEECCC
Confidence 578999999998887431 1 1123445677777777774 4456778889999988885 3567778888776
Q ss_pred Cc---CCCchh--hhhhcCCCCcccCCCCCCCCCCCCCCceeecCC---CCHHHHHHHHHcCCCcEEEEEEcccCCC--C
Q 015230 127 CY---HGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN--S 196 (411)
Q Consensus 127 ~~---~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~~~~~~~~~vi~~~~~~~--~ 196 (411)
.+ .+.... .+...|. .+..+++ .++++++++++ ++++++++++..|. .
T Consensus 169 e~v~~ggs~~i~~~~~~~G~-------------------~~~~v~~~~~~~l~dle~aI~---~~T~lv~~~h~sN~~~~ 226 (454)
T TIGR00474 169 ELVEIGGSFRIPDVMEQSGA-------------------KLVEVGTTNRTHLKDYEDAIT---ENTALLLKVHTSNYRIV 226 (454)
T ss_pred hhhhhcchhhHHHHHHHcCC-------------------EEEEeCCCCCCCHHHHHHhcC---cCCEEEEEEccCccccc
Confidence 54 222111 1111222 2222222 26888888886 35677666655433 3
Q ss_pred C--ccCCCHHHHHHHHHHHHHhCCEEEEecccccc--ccc------cCccccccCCCcchhhhh--hhccCCcccccccc
Q 015230 197 G--FIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLA------YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 264 (411)
Q Consensus 197 G--~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~--~~g------~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~ 264 (411)
| ...+ +++|.++|++||+++++|.+. |. ..+ .+...+......|++++| |+++|. ..|++++
T Consensus 227 G~~~~~d----l~~I~~la~~~g~~vivD~~s-G~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~g 300 (454)
T TIGR00474 227 GFTEEVS----IAELVALGREHGLPVMEDLGS-GSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIVG 300 (454)
T ss_pred CCCCCCC----HHHHHHHHHHcCCeEEEECCC-cccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eEEEEEE
Confidence 5 3566 999999999999999999753 22 111 111122223456888777 999863 2777889
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--------------PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
++++++.+.... ....+...-...++..+.+..+.. ....++.++++..+.+.|++... .+.
T Consensus 301 ~~~~i~~l~~~~---l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~-~~~ 376 (454)
T TIGR00474 301 KKELIERLKKNP---LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALG-PGF 376 (454)
T ss_pred CHHHHHhhhhch---hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhcc-CCc
Confidence 988887765311 111111122233333333433222 11224666677777777766421 111
Q ss_pred ceEE------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC--eEeccCCCcceee-ecCCCHHHHHHHH
Q 015230 331 AICG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAPSQFEAGFT-SLAHSSDDIQHTI 401 (411)
Q Consensus 331 ~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--i~v~~~~~~~~~~-~~~~t~~~i~~~i 401 (411)
...+ -|.|.+-.-.+ +.+.....+.......+.+.|++.. |+.+. ....+.+ +.+..++|++.++
T Consensus 377 ~~~~~~~~~~~ggg~~p~~~l-----~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~-~~~~~~ld~r~~~~~~~~~~~ 450 (454)
T TIGR00474 377 ELEIVPGLSQVGGGSLPDERL-----PSYAVTLTPDGLSAEKLEARLRELPPPIIGRI-EDDRFLLDLRTLLEDEEELLI 450 (454)
T ss_pred eEEEEEcCCcccCCCCcCCCC-----CeEEEEEecCCCCHHHHHHHHhcCCCCEEEEE-ECCEEEEEeCcCCHHHHHHHH
Confidence 1111 11222211111 1111111122223478888888764 66653 3344666 5677888998888
Q ss_pred HHH
Q 015230 402 TAA 404 (411)
Q Consensus 402 ~~l 404 (411)
++|
T Consensus 451 ~~~ 453 (454)
T TIGR00474 451 EAL 453 (454)
T ss_pred HHh
Confidence 776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-13 Score=138.04 Aligned_cols=300 Identities=16% Similarity=0.170 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEE-eCChHHHHHHHHHHHHhc--c-C--CcEEEEEeCCcCCCchhhhhhcCCCCcccCCC
Q 015230 76 LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAF--T-G--RERIIKFEGCYHGHADPFLVKAGSGVATLGLP 149 (411)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~v~~-~~~g~~a~~~al~~~~~~--~-~--~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~ 149 (411)
+...++.+++++.++ .+.+.+ .++|+++..++|..++.+ . + +..+++.+.+-|+.....+...|-.+..++..
T Consensus 542 ~~i~e~q~~l~eltG-~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d 620 (954)
T PRK05367 542 ELIDQLEAWLAEITG-YDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACD 620 (954)
T ss_pred HHHHHHHHHHHHHHC-CCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCC
Confidence 566788899999885 344554 446777776777555543 1 1 12345555666655555566666655555443
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-c
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G 228 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g 228 (411)
.. +.. |+++|++.++.++.++++|++...+..|+...+ +++|.++|+++|+++++|.++. +
T Consensus 621 ~~-G~i-------------D~~~L~~~i~~~~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 621 EN-GNI-------------DLDDLRAKAEEHADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred CC-CCc-------------CHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEECcChhh
Confidence 22 221 899999999865456777766654444333356 9999999999999999999995 2
Q ss_pred cccccCccccccCCCcchhhhh--hhcc----CCcc-cccccccHHHHHHhcCCCC---ccc--ccCCCCCHH----HHH
Q 015230 229 FRLAYGGAQEYFGVTPDLTTLG--KIIG----GGLP-VGAYGGRRDIMEMVAPAGP---MYQ--AGTLSGNPL----AMT 292 (411)
Q Consensus 229 ~~~g~~~~~~~~~~~~d~~~~s--K~~~----~G~~-~g~~~~~~~~~~~~~~~~~---~~~--~~t~~~~~~----~~a 292 (411)
+ .+ .. ..-....|+++++ |+|+ +|-| +|.+.+++.+...+..... ... .++....+. .+.
T Consensus 683 l-~~-l~--~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~ 758 (954)
T PRK05367 683 Q-VG-LA--RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILP 758 (954)
T ss_pred c-cC-CC--ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHH
Confidence 2 01 00 0011234666544 9985 2334 7778777655544432110 000 011111222 111
Q ss_pred HHHHHHHHHhcCChHHHHH---HHHHHHHHHHHHHHHhcCCceEEeeecc---eEEEEEecCCCCCcchhcccchHHHHH
Q 015230 293 AGIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFAR 366 (411)
Q Consensus 293 ~~~~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (411)
.+...+..+..+.+++..+ .+++|+.++|++. ++.... ...+. -..+++...+. ..+.....
T Consensus 759 ~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~~~~~-~~~~~~~~e~i~~~~~~~~--------~~g~~~~d 826 (954)
T PRK05367 759 ISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH---YPVLYT-GANGRVAHECILDLRPLKE--------STGITVDD 826 (954)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cCcccc-CCCCCcccceEEEeecccc--------cCCCCHHH
Confidence 2333444444454554444 8888999999774 232211 00011 12222211100 11123477
Q ss_pred HHHHHHHcCeEeccCC---Ccceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 367 FYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 367 ~~~~l~~~Gi~v~~~~---~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+.|.+.|+...... ...+++ .-..|++|||++++++..+..+
T Consensus 827 i~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e 875 (954)
T PRK05367 827 IAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAE 875 (954)
T ss_pred HHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence 9999999999876532 223444 5677999999999999887654
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-13 Score=123.94 Aligned_cols=307 Identities=14% Similarity=0.023 Sum_probs=185.3
Q ss_pred CcHHHHHHHHHHHHcCC--CCC------CCC---HHHHHHHHHHHhhCCC--CCEEEEeCC-hHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGT--SFG------APC---LLENVLAEMVISAVPS--IEMVRFVNS-GTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~--~~~------~~~---~~~~~l~~~l~~~~~~--~~~v~~~~~-g~~a~~~al~~~~~~~~~ 118 (411)
.|..+++++.+.+.+.. +.+ ..+ +..+++.+.+.+.++. ..+++|+.| ||+|+++++... ..++
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl--~~~~ 80 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL--LAEG 80 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc--CCCC
Confidence 46678899999888521 111 113 5667778888888862 346777755 999999999742 2256
Q ss_pred cEEEEEeCCcCCCchhhhhhc-CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 119 ERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
+++++...+..+....-.... |. +..+..+..... ....|+++++ ++ .++++|.+..+.+++|
T Consensus 81 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~----------~~~~~~~~~~--~~---~~~~~v~~th~ETstG 144 (349)
T TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNY----------TKIPDPSTWE--IS---EDAAYVHYCANETIHG 144 (349)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCC----------CCCCCHHhcC--CC---CCCCEEEEcCCCCccc
Confidence 777777777776544333222 33 333221100000 0000444443 11 3678888888888899
Q ss_pred ccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcc-cccccccHHHHHHhcCC
Q 015230 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLP-VGAYGGRRDIMEMVAPA 275 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~-~g~~~~~~~~~~~~~~~ 275 (411)
+..+ ++++.+++++++|.+++ .| ....++.++ .-+.+..|+++. + +|.++.++++++.+.+.
T Consensus 145 v~~~---------~l~~~~~~l~iVDavss---~g~~~id~~~~d--~~~~ssqK~lgP--~Glg~l~~s~~~~~~~~~~ 208 (349)
T TIGR01364 145 VEFR---------ELPDVKNAPLVADMSSN---ILSRPIDVSKFG--LIYAGAQKNIGP--AGLTVVIVRKDLLGRASRI 208 (349)
T ss_pred Eecc---------eecccCCCeEEEEcccc---ccCccCCHHHcc--EEEEecccccCC--CceEEEEECHHHHhhcccC
Confidence 8765 67777899999999997 22 222233222 223466799862 3 88889999998876542
Q ss_pred CCccc--------cc-CCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC-CceE---Eeeec
Q 015230 276 GPMYQ--------AG-TLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-HAIC---GGYIS 338 (411)
Q Consensus 276 ~~~~~--------~~-t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~g 338 (411)
.+.+. .. .++++.....+..++++.+.+ +++.++.+++.+++++.|+++ + +... .....
T Consensus 209 ~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~----~gl~~~~~~~~~rs 284 (349)
T TIGR01364 209 TPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS----NGFYRNPVDPRNRS 284 (349)
T ss_pred CCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC----CCeeccCCCHHHcC
Confidence 11100 11 235666777777788887764 344455566666666666655 3 2111 01122
Q ss_pred -ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 339 -GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.++.|.+.+ .....++.+.+.++|+.+.++. ...+|++ ..+|.+|++++++.|++++++
T Consensus 285 ~~v~sf~~~~-------------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 285 RMNVVFTLGN-------------EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred CeEEEEecCC-------------hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 345555422 1112567678899999776664 2457875 566899999999999998754
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-12 Score=123.10 Aligned_cols=312 Identities=10% Similarity=-0.001 Sum_probs=182.5
Q ss_pred CCHHHHHHHHHHHhhCCCCC--------EEEEeCChHHHHHHHHHHHHhcc--------CCcEEEEEeCCcCCCchhhhh
Q 015230 74 PCLLENVLAEMVISAVPSIE--------MVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLV 137 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~--------~v~~~~~g~~a~~~al~~~~~~~--------~~~~vi~~~~~~~~~~~~~~~ 137 (411)
..+.+..+.+|+++.++-++ .-+|++|||+|+..+|.++|... .+.-++..+..-|.+..-++.
T Consensus 168 ~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ 247 (539)
T PLN02590 168 ATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL 247 (539)
T ss_pred hHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH
Confidence 36788999999999997333 36889999999999998886531 123345555556666666666
Q ss_pred hcCCC---CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 138 KAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 138 ~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
..|-+ ++.++.+....... |+++|+++|++. ...+.+|+.+....++|.+-| +++|.+
T Consensus 248 ilGlg~~~vr~Vp~d~~~~~~m------------d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~ 311 (539)
T PLN02590 248 IGGIHEENIRLLKTDSSTNYGM------------PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGN 311 (539)
T ss_pred HcCCCcccEEEEeCCCCCCCcC------------CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHH
Confidence 66643 44444432111111 899999999752 234677777777777899988 999999
Q ss_pred HHHHhCCEEEEecccccc-ccccCccccccCCC-cchh--hhhhhccCCcccccccccH--HHHHHhcCCCCcc------
Q 015230 212 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT-PDLT--TLGKIIGGGLPVGAYGGRR--DIMEMVAPAGPMY------ 279 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~-~d~~--~~sK~~~~G~~~g~~~~~~--~~~~~~~~~~~~~------ 279 (411)
+|++||+++++|.+|.|+ ...+..-.-..|+. .|-+ ..-|++...+..|.+..+. .+.+.+.....++
T Consensus 312 i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~ 391 (539)
T PLN02590 312 IAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK 391 (539)
T ss_pred HHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence 999999999999999876 32211111112332 3433 4679998767788775543 2333332111110
Q ss_pred -----ccc--CC-CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEec
Q 015230 280 -----QAG--TL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTE 347 (411)
Q Consensus 280 -----~~~--t~-~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~ 347 (411)
... +. ..-.+.......+++.+.. .+++.+..++++++.+.|++. +....+ ...-.++.|.+..
T Consensus 392 ~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~----~~fel~~~~~l~iVcFr~~~ 467 (539)
T PLN02590 392 KDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD----PSFEVVTTRYFSLVCFRLAP 467 (539)
T ss_pred cccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceEEEEEEecC
Confidence 000 11 1111223333344444333 455556666666666666554 322211 2222344554432
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEe-ccC---CCcceee---ecCCCHHHHHHHHHHHHHHHHh
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-~~~---~~~~~~~---~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..... ........++.+.+.+.|... .+. +-..+|+ +..+++++++.+++.|.+...+
T Consensus 468 ~~~~~-----~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 468 VDGDE-----DQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred CCCCH-----HHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 11000 001223467777777776544 332 2223454 5778999999999999887654
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-13 Score=125.77 Aligned_cols=305 Identities=11% Similarity=-0.039 Sum_probs=172.5
Q ss_pred CcHHHHHHHHHHHHcCC---CC-CCCCHHHHHHHHHHHhhCC-C-CCEEEEe-CChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 53 ADDQVLAALGETMKKGT---SF-GAPCLLENVLAEMVISAVP-S-IEMVRFV-NSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~---~~-~~~~~~~~~l~~~l~~~~~-~-~~~v~~~-~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.+|++++++........ +. .-..+..++..+.+++.++ . ..+|+|+ +|||.+++.++... ..+ +.++..
T Consensus 14 ~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l---~~~-~~l~i~ 89 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL---IEK-KSLHLS 89 (361)
T ss_pred CCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc---ccc-cccEEe
Confidence 57888888764421111 11 1124556677778888886 2 3478886 66999999999743 222 233333
Q ss_pred CCcCCCchhhhh-hc--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCC
Q 015230 126 GCYHGHADPFLV-KA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 202 (411)
Q Consensus 126 ~~~~~~~~~~~~-~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~ 202 (411)
.+.++....-.. .. ...+..+..+. + +.++..+ ..++++|.+.++.+.+|++.|
T Consensus 90 ~G~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~--~~~~~~~---~~~~~lV~~~h~et~tG~~~p- 146 (361)
T TIGR01366 90 FGEFSSKFAKAVKLAPWLGEPIIVTADP-----------------G--SAPEPQA---DPGVDVIAWAHNETSTGVAVP- 146 (361)
T ss_pred cCHHHHHHHHHHHhhhccCCceEEecCC-----------------C--CCCCCcc---CCCCCEEEEcccCCccceecc-
Confidence 344432222111 11 11222222111 0 0111111 247889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchh--hhhhhccC-CcccccccccHHHHHHhcCCCC-
Q 015230 203 PDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPAGP- 277 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~~~~~~~~~~~~~- 277 (411)
+++| ++++|+++++|.+++ .| ....++ . .|++ +..|++++ |. ++.++.++++++.+.+...
T Consensus 147 ---i~~I---~~~~g~~~iVDavqs---~g~~~idv~--~--~D~~~~s~~K~lg~~~G-l~~~~~s~~~~~~~~~~~~~ 212 (361)
T TIGR01366 147 ---VRRP---EGSDDALVVIDATSG---AGGLPVDIA--E--TDVYYFAPQKNFASDGG-LWLAIMSPAALERIEAIAAS 212 (361)
T ss_pred ---cccc---cccCCCeEEEEcCcc---ccCCCCCHH--H--CCEEEEEchhhcCCCCc-eEEEEECHHHHhhhhcccCC
Confidence 7776 689999999999997 22 112222 1 3554 55698884 11 4445668888776652110
Q ss_pred -----cc------------cccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 278 -----MY------------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 278 -----~~------------~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
.+ .....+++.....+..++++.+.+ ++..++.+++.+++++.++++............
T Consensus 213 ~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~ 292 (361)
T TIGR01366 213 GRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGK 292 (361)
T ss_pred CCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhh
Confidence 01 121234444444456667776654 334466667777777777766311111100000
Q ss_pred ec-ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----Ccceeee--cCCCHHHHHHHHHHHHHHHH
Q 015230 337 IS-GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 337 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~--~~~t~~~i~~~i~~l~~~~~ 409 (411)
.. ....+.+ +++.+...+.+.|.++||.+.++. ...+|++ ...|.+++++++++|+++++
T Consensus 293 ~s~~v~~v~~-------------~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 293 RSQVVGTIDF-------------VDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred cccceEEEEC-------------CCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 11 1111222 122234678899999999997762 2347773 57799999999999999988
Q ss_pred hC
Q 015230 410 QI 411 (411)
Q Consensus 410 ~~ 411 (411)
+|
T Consensus 360 ~~ 361 (361)
T TIGR01366 360 RL 361 (361)
T ss_pred hC
Confidence 75
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=130.92 Aligned_cols=301 Identities=12% Similarity=0.106 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeC-ChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLG 147 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~-~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (411)
-+...++.+++++++ +.+.+.+-+ +|+.+..+++++.+.+ .+++++++ +.+-|+.....+...|..+..++
T Consensus 542 lq~i~elq~~l~eLt-Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLI-p~saHgtNpasa~~~GieVv~Vp 619 (954)
T PRK12566 542 RAMIDELEAWLCAIT-GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLI-PSSAHGTNPASAQMAGMRVVIVE 619 (954)
T ss_pred HHHHHHHHHHHHHHH-CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEe-cccccccCHHHHHHCCCEEEEec
Confidence 445567778888888 555555554 7888887777666554 23444444 44555544444445565555544
Q ss_pred CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc
Q 015230 148 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~ 227 (411)
... .+.. |+++|++.++++.+++++|++..+++.|+...+ +++|.++|+++|+++++|.++.
T Consensus 620 ~D~-~G~i-------------Dle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vDgA~~ 681 (954)
T PRK12566 620 CDP-DGNV-------------DLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMDGANL 681 (954)
T ss_pred cCC-CCCc-------------CHHHHHHHhhccCCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEEeeCh
Confidence 432 2322 899999999866667888877666555544334 9999999999999999999995
Q ss_pred -ccccccCccccccCCCcchhhh--hhhcc----CCcc-cccccccHHHHHHhcCCCC-------cccc---cCCCCCHH
Q 015230 228 -GFRLAYGGAQEYFGVTPDLTTL--GKIIG----GGLP-VGAYGGRRDIMEMVAPAGP-------MYQA---GTLSGNPL 289 (411)
Q Consensus 228 -g~~~g~~~~~~~~~~~~d~~~~--sK~~~----~G~~-~g~~~~~~~~~~~~~~~~~-------~~~~---~t~~~~~~ 289 (411)
+. ...-.. -....|++++ .|+|+ +|.| +|.+...+++...+..... ...+ +.+..+..
T Consensus 682 ~a~--~~l~~P--g~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~ 757 (954)
T PRK12566 682 NAQ--VGLARP--ADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSAS 757 (954)
T ss_pred hhc--cCCCCh--hhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHH
Confidence 21 010000 1234466654 59885 2344 7777777776666653210 0111 12222323
Q ss_pred HHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHhcCCceEEeeecc-eEEEEEecCCCCCcchhcccchHHHH
Q 015230 290 AMTAGIHTLKRLKEPGTYE---YLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFA 365 (411)
Q Consensus 290 ~~a~~~~~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (411)
.+.++...+..+..+ +.+ ....+.+|++++|.+. ++.... ...+. +-.+.+.-...+. ..+.+..
T Consensus 758 ~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~---~~v~~~-~~~~~~~hEfii~~~~l~~------~~g~~~~ 826 (954)
T PRK12566 758 ILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA---FPVLYR-GRNERVAHECILDLRPLKA------QTGISEE 826 (954)
T ss_pred HHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh---CCCCcC-CCCCCeeeEEEEEcccccc------ccCCCHH
Confidence 334444445544434 322 2355788888888763 333321 11111 1111111110000 1112336
Q ss_pred HHHHHHHHcCeEeccCC---Ccceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 366 RFYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 366 ~~~~~l~~~Gi~v~~~~---~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+.|.+.||...... ...+++ .-..+++|||+++++|..+.++
T Consensus 827 dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 827 DVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred HHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 78899999898765321 234554 4677999999999999988765
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-13 Score=110.75 Aligned_cols=324 Identities=17% Similarity=0.163 Sum_probs=196.3
Q ss_pred CCcHHHHHHHHHHHHcCCC--CC--C-----CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEE
Q 015230 52 HADDQVLAALGETMKKGTS--FG--A-----PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 122 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~--~~--~-----~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi 122 (411)
...++.++|+.+--+-.+. ++ + .......+.+.+++.+ +.|.+-+|+|+-+|-.++|. .+.++++.+
T Consensus 28 iLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl-g~D~~R~t~GARe~KfavMh---al~~~gd~v 103 (382)
T COG1103 28 ILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL-GMDEVRVTAGAREAKFAVMH---ALCKEGDWV 103 (382)
T ss_pred cCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh-CCceeeecccchhhHHHHHH---HhccCCCEE
Confidence 3778888888776544221 11 0 1222233333333333 99999999999999999887 566788888
Q ss_pred EEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc----CCCcEEEEEEcccCCCCCc
Q 015230 123 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN----NKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 123 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~~~~vi~~~~~~~~G~ 198 (411)
+.+.-.|-.+.-++...|.++...+-...+ .+.+ +++...+.|++ ..+.+++.++..+.++.|.
T Consensus 104 V~D~~aHYttyvAAEragl~v~eVp~tg~P---------ey~i---~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGN 171 (382)
T COG1103 104 VVDSLAHYTTYVAAERAGLNVAEVPNTGYP---------EYKI---TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGN 171 (382)
T ss_pred EEcCcchHHHHHHHHhcCCeEEecCCCCCC---------ceEe---cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCC
Confidence 889888877777777777766664432222 2222 55555555553 3345888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCC
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG 276 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~ 276 (411)
+.+ .++++++|+++|++++...+|+ .|.. ......+.+|++ |--|++++.-|+|.+..+++..+......
T Consensus 172 l~D----akkva~ic~e~gvPlllN~AYt---~Grm-pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S 243 (382)
T COG1103 172 LAD----AKKVAKICREYGVPLLLNCAYT---VGRM-PVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS 243 (382)
T ss_pred chh----hHHHHHHHHHcCCceEeeccee---eccc-cccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc
Confidence 999 9999999999999999999997 3321 112234566765 44589986669999999888876653211
Q ss_pred -C-------cccccCCCCCHH-HHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHH--HhcCCceEEeeecceEEEE
Q 015230 277 -P-------MYQAGTLSGNPL-AMTAGI-HTLKRLKEPGTYEYLNKITGELTQGIIDAG--KKAGHAICGGYISGMFGFF 344 (411)
Q Consensus 277 -~-------~~~~~t~~~~~~-~~a~~~-~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~g~~~~~~ 344 (411)
. -+.+-|..+.|+ .+.|.. ...+.. +++ +.-.+..+++.+.|+++. .+.+.. ++. --++.|+
T Consensus 244 g~~~~~KEvellGCT~rGapivTlmASfP~V~eRV--krW-deEv~kaR~fv~elEkigg~~qlG~r--Pk~-HdLm~Fe 317 (382)
T COG1103 244 GRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERV--KRW-DEEVEKARWFVAELEKIGGVKQLGER--PKN-HDLMKFE 317 (382)
T ss_pred ccccccceeeeecccccCchHHHHHhcCHHHHHHH--HHH-HHHHHHHHHHHHHHHHhhhHHHhCCC--Ccc-cceeeec
Confidence 1 111223233333 222211 111211 222 223456778888888874 222221 111 1133333
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeE-eccCCCcceeee-cCCCHHHHHHHHHHHHHHHHh
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPSQFEAGFTS-LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~~~~~~~~~-~~~t~~~i~~~i~~l~~~~~~ 410 (411)
-+.. ...........-.+++.|+++||. +.|+....+-++ +..+.|+++..++++++++.+
T Consensus 318 tp~f-----~eIakk~~r~gyFlY~ELK~RgI~GI~~G~Tk~~K~svyGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 318 TPVF-----HEIAKKHKRKGYFLYEELKKRGIHGIQPGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred CchH-----HHHHHhCcCCceeeHHHHHhcCccccccCceeEEEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 2110 000000001113577888888875 456655556664 678999999999999998764
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-12 Score=132.16 Aligned_cols=345 Identities=14% Similarity=0.069 Sum_probs=195.4
Q ss_pred CCEEEeccCCccccccCCCcH-HHHHHHHHHHHcCCCC--C-C-----CCHHHHHHHHHHHhhCC-CCC--EEEEeCChH
Q 015230 35 GNEYIDYVGSWGPAIIGHADD-QVLAALGETMKKGTSF--G-A-----PCLLENVLAEMVISAVP-SIE--MVRFVNSGT 102 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~-~v~~a~~~~l~~~~~~--~-~-----~~~~~~~l~~~l~~~~~-~~~--~v~~~~~g~ 102 (411)
+..|+|..+. .+ .++ .+.+++.+.+...... . + ..+..++..+.+++.++ ..+ .|+||+|+|
T Consensus 34 ~~iYLD~Aat---t~---~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT 107 (805)
T PLN02724 34 GVVYLDHAGA---TL---YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGAT 107 (805)
T ss_pred CCEeEeCCCC---CC---CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChH
Confidence 3578886655 22 234 4444444444432111 1 1 13456777788888887 344 589999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh-c--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH-
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-A--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE- 178 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~- 178 (411)
+|+..+.... ...+++.|++. ...|......... . |..+..++.+...+.+..... .+.. +.+++++.++
T Consensus 108 ~alnlva~~l-~~~~gd~Iv~t-~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g---~~~~-~~~~l~~~~~~ 181 (805)
T PLN02724 108 AALKLVGETF-PWSSESHFCYT-LENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQG---SVVV-KSRGLQRRNTS 181 (805)
T ss_pred HHHHHHHHHC-CCCCCCeEEEe-eccccchHHHHHHHHHcCCeEEeccchhcccccccccc---cccc-chhhhhhhhhh
Confidence 9999887632 23455666664 4444444443332 1 333333322211110000000 0000 1244555431
Q ss_pred ---c---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh--------CCEEEEeccccccccccCccccccCCCc
Q 015230 179 ---N---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--------GALLIFDEVMTGFRLAYGGAQEYFGVTP 244 (411)
Q Consensus 179 ---~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~--------~~~li~De~~~g~~~g~~~~~~~~~~~~ 244 (411)
. ..+++++|.+....|.+|.+.| ++.|.++++.. ++++++|.+|+ .|. ...+.-.+.+
T Consensus 182 ~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~---~g~-~piDv~~~~~ 253 (805)
T PLN02724 182 KLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG---CGT-SPPDLSRYPA 253 (805)
T ss_pred hhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh---cCC-CCCChhhcCC
Confidence 1 1235678999999999999999 87765555532 36899999996 222 2233334467
Q ss_pred chhh--hhhhccCCcccccccccHHHHHHhcCCCCccc---------------------ccCCCCCHHHHHHHHHHHHHH
Q 015230 245 DLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ---------------------AGTLSGNPLAMTAGIHTLKRL 301 (411)
Q Consensus 245 d~~~--~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~---------------------~~t~~~~~~~~a~~~~~l~~~ 301 (411)
|+++ .-|++++-.-+|++++++++.+.+.+...... .-.-+.|..+.++..++++.+
T Consensus 254 Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l 333 (805)
T PLN02724 254 DFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLL 333 (805)
T ss_pred CEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 8765 45988741228899888888776653110000 001145556666666777766
Q ss_pred hc---CChHHHHHHHHHHHHHHHHHHHHhcC--CceE---------EeeecceEEEEEecCCCCCcchhcccchHHHHHH
Q 015230 302 KE---PGTYEYLNKITGELTQGIIDAGKKAG--HAIC---------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 367 (411)
Q Consensus 302 ~~---~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (411)
.+ +++.++.+++.+++.+.|+++....+ .+.. ....+.++.|.+.+.+.. ......+
T Consensus 334 ~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~---------~v~~~~v 404 (805)
T PLN02724 334 NRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGS---------WVGHREV 404 (805)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCC---------EeCHHHH
Confidence 55 67778888888999888887731101 1111 123577888888654311 1112345
Q ss_pred HHHHHHcCeEeccCCC---------------------------------------cceeee--cCCCHHHHHHHHHHHHH
Q 015230 368 YRGMLEEGVYFAPSQF---------------------------------------EAGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 368 ~~~l~~~Gi~v~~~~~---------------------------------------~~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
.+.+.++||.++.|.. ..+|++ ...|.+|+|++++.|++
T Consensus 405 ~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~ 484 (805)
T PLN02724 405 EKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIIS 484 (805)
T ss_pred HHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHH
Confidence 5555667888866532 225554 67799999999999998
Q ss_pred HH
Q 015230 407 VL 408 (411)
Q Consensus 407 ~~ 408 (411)
.+
T Consensus 485 ~~ 486 (805)
T PLN02724 485 SF 486 (805)
T ss_pred Hh
Confidence 64
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-13 Score=124.40 Aligned_cols=309 Identities=13% Similarity=0.012 Sum_probs=175.5
Q ss_pred CcHHHHHHHHHHHHcCCC-----CCCC------CHHHHHHHHHHHhhCC--CCCEEEEeCC-hHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGTS-----FGAP------CLLENVLAEMVISAVP--SIEMVRFVNS-GTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-----~~~~------~~~~~~l~~~l~~~~~--~~~~v~~~~~-g~~a~~~al~~~~~~~~~ 118 (411)
.++.|++++.+.+.+... +... .+..++..+.+++.++ ..+.++||+| +|++++.++.....-.++
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~ 89 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGT 89 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCe
Confidence 688999999998854211 0011 2556778888888887 4568999977 999999999753211113
Q ss_pred cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC-HHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 119 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
..+|+ .+.|..+........|..+..+..+..... .+ .+..+..++ +++++|.+..+.+.+|
T Consensus 90 ~~~i~-~g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-------------~~~~~~~~~~~~---~~~~lV~~~h~~t~tG 152 (355)
T cd00611 90 ADYVV-TGAWSAKAAKEAKRYGGVVVIVAAKEEGKY-------------TKIPDVETWDLA---PDAAYVHYCSNETIHG 152 (355)
T ss_pred EEEEE-CCHHHHHHHHHHHhcCCCcEEEecccccCC-------------CCCCCHhhcCCC---CCCCEEEEeCCccccc
Confidence 33333 233322111111222333333322211000 01 111112222 4677888888888888
Q ss_pred ccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcc-cccccccHHHHHHhcCC
Q 015230 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLP-VGAYGGRRDIMEMVAPA 275 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~-~g~~~~~~~~~~~~~~~ 275 (411)
...+ ++++.||+++++|.+|+ .| ....++.++ .++.+..|.++. + +|.++.++++++.+.+.
T Consensus 153 ~~~~---------~i~~~~g~~~~VDa~qs---~g~~~idv~~~~--~~~ss~~K~lGP--~G~g~l~~~~~~~~~~~~~ 216 (355)
T cd00611 153 VEFD---------EVPDTGGVPLVADMSSN---ILSRPIDVSKFG--VIYAGAQKNLGP--AGVTVVIVRKDLLGKARKI 216 (355)
T ss_pred EEcc---------eecccCCCeEEEEcccc---ccCCCCCHHHhC--EEEeecccccCC--CceEEEEECHHHHhhcccC
Confidence 7643 45556999999999997 22 222223333 344456798752 3 88889999988776542
Q ss_pred CCccc--------cc-CCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceE
Q 015230 276 GPMYQ--------AG-TLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMF 341 (411)
Q Consensus 276 ~~~~~--------~~-t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~ 341 (411)
.+.+. .. ..++|.....+..++++.+.+ +++.++.+++.+++++.|+++..-+....... ..+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vv 296 (355)
T cd00611 217 TPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNV 296 (355)
T ss_pred CCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEE
Confidence 11110 01 235556666777777887654 34456666666667766666511010111111 122446
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
.|.+.+. ....++.+.+.++|+++.++. ...+|++ ...|++|++++++.|+++
T Consensus 297 sf~~~~~-------------~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 297 PFRLGKE-------------ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred EEEcCCh-------------hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 6655321 111455578889999865553 2457885 455999999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-13 Score=118.14 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=127.8
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeC
Q 015230 48 AIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 126 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~ 126 (411)
..+.+.+++=.+++...-..+..|. ....-...+.++++.+-++. ..+.+.||..|+..|+.. ....++.|+....
T Consensus 33 Tsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~-aa~a~aSG~AA~~~ai~~--la~aGD~iVss~~ 109 (426)
T COG2873 33 TSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGV-AALAVASGQAAITYAILN--LAGAGDNIVSSSK 109 (426)
T ss_pred eeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcch-hhhhhccchHHHHHHHHH--hccCCCeeEeecc
Confidence 5566666554444433222122221 11344467777777777543 345667899999998863 2345677777766
Q ss_pred CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
-|-|.+....... +..+.++.+++.+|++.++++++ +++++|++|..-|+.+.+.+ +
T Consensus 110 LYGGT~~lf~~tl----------------~~~Gi~v~fvd~~d~~~~~~aI~---~nTkavf~EtigNP~~~v~D----i 166 (426)
T COG2873 110 LYGGTYNLFSHTL----------------KRLGIEVRFVDPDDPENFEAAID---ENTKAVFAETIGNPGLDVLD----I 166 (426)
T ss_pred ccCchHHHHHHHH----------------HhcCcEEEEeCCCCHHHHHHHhC---cccceEEEEeccCCCccccC----H
Confidence 6766554432221 22345677888889999999998 57999999999999999999 9
Q ss_pred HHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC-Ccccccccc
Q 015230 207 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 264 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~ 264 (411)
+.|.++|++||+++|+|.+.+ .++......+..|++ |++|+++| |--+|.++.
T Consensus 167 e~ia~iAh~~gvpliVDNT~a-----tpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 167 EAIAEIAHRHGVPLIVDNTFA-----TPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred HHHHHHHHHcCCcEEEecCCC-----cceecchhhcCCCEEEEeecccccCCccccceEEE
Confidence 999999999999999999986 223344445556765 89999997 777887754
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-12 Score=113.80 Aligned_cols=285 Identities=15% Similarity=0.115 Sum_probs=170.4
Q ss_pred CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-
Q 015230 73 APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL- 148 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~- 148 (411)
+..-.++.+|+.+.++=+ .+++|++|.|++.|+...|++. ...+++.|++.-|-|+-.+.......+..+-+.-.
T Consensus 114 Gv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~-~~~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdE 192 (475)
T KOG0258|consen 114 GVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLL-IAGKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDE 192 (475)
T ss_pred CChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHH-hcCCCCceEeecCCCchhHHHHHHhCCcccceeecc
Confidence 347778899999988765 5889999999999999999875 33467789999999985544444444443333211
Q ss_pred CCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecc
Q 015230 149 PDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
.-.++. |.+++++.+++.. +-.+++++||.|+.|-+... +-+++|..+|.++++.|+.||+
T Consensus 193 e~~W~l--------------d~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~--e~ie~i~~fa~~~~l~llaDEV 256 (475)
T KOG0258|consen 193 ESNWSL--------------DVAELERSVDEARKGINPRALVVINPGNPTGQVLSE--ENIEGIICFAAEEGLVLLADEV 256 (475)
T ss_pred ccCCCC--------------CHHHHHHHHHHHhccCCceEEEEECCCCccchhhcH--HHHHHHHHHHHHcCeEEechHH
Confidence 222222 8899988887632 23567999998887665554 4499999999999999999999
Q ss_pred cccc--ccccCcc-----ccccC-CCcc------hhhhhhhccC--Ccccccc-cc--cHHHHHHhcCCCCcccccCCCC
Q 015230 226 MTGF--RLAYGGA-----QEYFG-VTPD------LTTLGKIIGG--GLPVGAY-GG--RRDIMEMVAPAGPMYQAGTLSG 286 (411)
Q Consensus 226 ~~g~--~~g~~~~-----~~~~~-~~~d------~~~~sK~~~~--G~~~g~~-~~--~~~~~~~~~~~~~~~~~~t~~~ 286 (411)
|-.- ..+..|. ..+.+ ..++ +.+.||++.| |.|-|++ +. .++..+.+.+......+.+
T Consensus 257 YQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~--- 333 (475)
T KOG0258|consen 257 YQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQ--- 333 (475)
T ss_pred HHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCC---
Confidence 9422 2232221 11122 1232 3468998874 8899998 33 3455444432111111111
Q ss_pred CHHHHHHH----------HHHHHHH--hcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcc
Q 015230 287 NPLAMTAG----------IHTLKRL--KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 354 (411)
Q Consensus 287 ~~~~~a~~----------~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 354 (411)
...++.. -...+.. +.+.+.+.++++++.+.+.++.+ ..+......|.|+.|.-...+.+.+.
T Consensus 334 -V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~----~gi~cn~~qGAMY~fP~i~lP~kaie 408 (475)
T KOG0258|consen 334 -VSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSL----EGISCNPVQGAMYLFPQISLPPKAIE 408 (475)
T ss_pred -ccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhc----CceeeccCccceeecccccCCHHHHH
Confidence 1111110 0111111 22566677888888888888776 55555566688877754332222221
Q ss_pred hhcccchHHHHHHHHHHHHc-CeEeccCC
Q 015230 355 DAKKSETTKFARFYRGMLEE-GVYFAPSQ 382 (411)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~ 382 (411)
.+..-...--...+..|++. ||.+.||+
T Consensus 409 ~A~~~~~~PD~FYc~~LLe~tGIcvVPGS 437 (475)
T KOG0258|consen 409 AAKALGIAPDEFYCLKLLEATGICVVPGS 437 (475)
T ss_pred HHHHhCCCCcHHHHHHHHHhcCeEEecCC
Confidence 11110000013455566555 99999984
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=113.60 Aligned_cols=163 Identities=26% Similarity=0.231 Sum_probs=108.6
Q ss_pred HHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCC
Q 015230 79 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 157 (411)
Q Consensus 79 ~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 157 (411)
+++.+++++.++ +.+++++++||++|+..+++.+. ..++.+++..+.|++.........|..+..++........
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-- 78 (170)
T cd01494 3 EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGG-- 78 (170)
T ss_pred HHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC--CCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccc--
Confidence 456666777764 67789999999999999998542 2367899999999887633333444444333222111110
Q ss_pred CCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc
Q 015230 158 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236 (411)
Q Consensus 158 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~ 236 (411)
.+.+.+++... ..+++++++++.++++|...+ +++|.++|+++|+++|+|++|.++ .....
T Consensus 79 ----------~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-- 140 (170)
T cd01494 79 ----------LDVAILEELKA--KPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG-- 140 (170)
T ss_pred ----------hhhhhhhhccc--cCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--
Confidence 02223433322 357899999999988898888 899999999999999999999866 33221
Q ss_pred ccccCCCcchh--hhhhhccCCcccccccc
Q 015230 237 QEYFGVTPDLT--TLGKIIGGGLPVGAYGG 264 (411)
Q Consensus 237 ~~~~~~~~d~~--~~sK~~~~G~~~g~~~~ 264 (411)
.+.....+|++ +++|++++ .+.|++++
T Consensus 141 ~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~ 169 (170)
T cd01494 141 VLIPEGGADVVTFSLHKNLGG-EGGGVVIV 169 (170)
T ss_pred cccccccCCEEEEEcccccCC-CceEEEEe
Confidence 11222346766 45599986 56888765
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=115.18 Aligned_cols=347 Identities=12% Similarity=0.042 Sum_probs=177.7
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHH-HHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAA-LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a-~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~ 112 (411)
....|+|+.+-.++ +.+.++ +.++..-...|.+. ....++.+.+++.+ +.+++++++||+.|+..+..
T Consensus 36 ~~~v~iDLltDsgT-------~aMs~~q~a~~~~GDe~yag~-~s~~~lE~~va~~~-G~~~av~v~sGT~Al~ll~~-- 104 (450)
T TIGR02618 36 SEDVYIDLLTDSGT-------NAMSDKQWAGLMMGDEAYAGS-RNFYHLERTVRELY-GFKYVVPTHQGRGAENLLSQ-- 104 (450)
T ss_pred cCceEEEcccCCCc-------HHHHHHHHHHhhhcchhhcCC-CcHHHHHHHHHHHH-CCCeEEEcCCHHHHHHHHHH--
Confidence 45678999987543 455555 43333222233322 22344555555555 78899999999999887532
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC-CHHHHHHHHHcC-CCcEEEEEEc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENN-KGEIAAIILE 190 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~~-~~~~~~vi~~ 190 (411)
...++++++ .++.|...+.......|..+.-+..+...+.. .. .. ...+ |++++++.++.. ..+++.+.++
T Consensus 105 -l~l~pGDeV-psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~-~~--~p--~~GniD~~~Le~aI~~~~~~~~~lV~~e 177 (450)
T TIGR02618 105 -IAIKPGDYV-PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQ-LN--IP--FKGNVDLKKLQKLIDEVGADKIPYICLA 177 (450)
T ss_pred -hCCCCcCEE-CCceeHHHHHHHHHhCCeEEEeeecccccccc-cC--CC--CCCCcCHHHHHHHhccccCcccCceEEE
Confidence 333344443 44444444443344444411111111000000 00 00 0001 899999999853 2234455555
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc----c-c--cccCccccccC------CCcchhhhhhhcc-CC
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----F-R--LAYGGAQEYFG------VTPDLTTLGKIIG-GG 256 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g----~-~--~g~~~~~~~~~------~~~d~~~~sK~~~-~G 256 (411)
-.++..|..+.+.+.+++|.++|++||++||.|.++.- | + .........+. -..|. +++|+.- +|
T Consensus 178 ~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~ 256 (450)
T TIGR02618 178 VTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADG-CTMSGKKDCL 256 (450)
T ss_pred EecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcE-EEEeeccCCC
Confidence 44444433444444599999999999999999999961 1 1 01100000000 01233 3444442 34
Q ss_pred ccccccc--ccHHHHHHhcCCCCcccc-cCCCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 257 LPVGAYG--GRRDIMEMVAPAGPMYQA-GTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 257 ~~~g~~~--~~~~~~~~~~~~~~~~~~-~t~~~-~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
.|+|.++ .++++++..+.....+-+ .+.++ ..-.+.+...+++...++...++..+..+++.+.|++. ++..
T Consensus 257 ~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~----Gvpv 332 (450)
T TIGR02618 257 VNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA----GVPI 332 (450)
T ss_pred CCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC----CCcc
Confidence 4777664 477888877643222211 12222 11122222333443333455566666788888888877 4433
Q ss_pred EEeeecceEEEEEecC--CCCCcchhcccchHHHHHHHHHHH-HcCeEeccC------CC-----------cceee--e-
Q 015230 333 CGGYISGMFGFFFTEG--PVYNFEDAKKSETTKFARFYRGML-EEGVYFAPS------QF-----------EAGFT--S- 389 (411)
Q Consensus 333 ~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~------~~-----------~~~~~--~- 389 (411)
..+..|..++++.... .++. ..=-+..++-.|. +-||-..-- .. -.+|+ |
T Consensus 333 ~~p~ggh~V~vda~~~lph~~~-------~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaipr 405 (450)
T TIGR02618 333 VEPVGGHAVFLDARRFLPHIPQ-------DQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPR 405 (450)
T ss_pred cCCCCcceEEEEhHHhCCCCCh-------hhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeecccc
Confidence 2345678888887552 1111 1112345555554 446643221 11 11454 3
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 015230 390 LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~~~ 410 (411)
-.-|.+++|...++|..+.++
T Consensus 406 r~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 406 RVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred ccccHhHHHHHHHHHHHHHhh
Confidence 455889999999999887653
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-12 Score=121.30 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
.+..+.+.+.+++..+. +..++++||+.|+.+++... ..++++||+....|.+...........
T Consensus 68 ~pt~~~le~~la~l~g~-~~~v~fsSG~~Ai~~al~~l--l~~Gd~VI~~~~~y~~t~~~~~~~l~~------------- 131 (437)
T PRK05613 68 NPTVEALENRIASLEGG-VHAVAFASGQAAETAAILNL--AGAGDHIVTSPRLYGGTETLFLVTLNR------------- 131 (437)
T ss_pred ChHHHHHHHHHHHHhCC-CeEEEeCCHHHHHHHHHHHh--cCCCCEEEECCCccHHHHHHHHHHHHh-------------
Confidence 45567888888888754 56777777889998887642 356678888877777653221111100
Q ss_pred CCCCCCceeecC-CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 155 PKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~-~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
.+..+..++ ..|++++++.++ +++++|+++...|+.|.+.+ +++|.++|+++|+++|+|.+++ .|.
T Consensus 132 ---~Gi~v~~vd~~~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a---~g~ 198 (437)
T PRK05613 132 ---LGIEVTFVENPDDPESWQAAVQ---PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA---TAA 198 (437)
T ss_pred ---cCeEEEEECCCCCHHHHHHhCC---ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCc---ccc
Confidence 111233332 237888888886 35677888877777778888 9999999999999999999996 221
Q ss_pred CccccccCCCcchhhhhhhccC-Ccccccc
Q 015230 234 GGAQEYFGVTPDLTTLGKIIGG-GLPVGAY 262 (411)
Q Consensus 234 ~~~~~~~~~~~d~~~~sK~~~~-G~~~g~~ 262 (411)
......+|.+.-+.|+.|.++| |--+|.+
T Consensus 199 ~~~p~~~GaDivv~S~~K~l~G~gd~~gG~ 228 (437)
T PRK05613 199 LVRPLELGADVVVASLTKFYTGNGSGLGGV 228 (437)
T ss_pred ccChHHhCCCEEEeeccceecCCCcceeEE
Confidence 1111123443334477899986 4444544
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-12 Score=117.46 Aligned_cols=283 Identities=17% Similarity=0.134 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...+.+.++++. +.++.+.++||..|+..++.. ....+++|++....|.+.+........+
T Consensus 62 nPT~~~lE~~~a~LE-g~~~~~afsSGmaAI~~~~l~--ll~~GD~vl~~~~~YG~t~~~~~~~l~~------------- 125 (396)
T COG0626 62 NPTRDALEEALAELE-GGEDAFAFSSGMAAISTALLA--LLKAGDHVLLPDDLYGGTYRLFEKILQK------------- 125 (396)
T ss_pred CccHHHHHHHHHHhh-CCCcEEEecCcHHHHHHHHHH--hcCCCCEEEecCCccchHHHHHHHHHHh-------------
Confidence 344566666666665 777888888999999998753 3345788888888887755443322211
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
.+.++..+...+.+.+++.+.. +++++|++|++.|+.-.+.+ +.+|+++|+++|+++|+|.+.+ .+
T Consensus 126 ---~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfa-----tP 191 (396)
T COG0626 126 ---FGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFA-----TP 191 (396)
T ss_pred ---cCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCcc-----cc
Confidence 2234444444455566666652 47999999999988888888 9999999999999999999997 22
Q ss_pred ccccccCCCcchh--hhhhhccCC--cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d~~--~~sK~~~~G--~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
..++.+.+..|++ |.+|.++|. .-.|.+++ ++++.+.+... .....-....|..+...+..++-+ .-..++
T Consensus 192 ~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~--~~~~~G~~l~p~dA~l~lRGlkTL--~~Rm~~ 267 (396)
T COG0626 192 VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA--QRANTGAVLSPFDAWLLLRGLRTL--ALRMER 267 (396)
T ss_pred cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH--HHhhcCCCCCHHHHHHHHhccchH--HHHHHH
Confidence 3334444445655 789999984 44665554 44555554210 011112344556555555555433 333456
Q ss_pred HHHHHHHHHHHHHHHHHhcCCce------------------EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDAGKKAGHAI------------------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~------------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
..+++..+.+.|++. |.+. ...+.|.++.|++.+ +.++.++.+.|
T Consensus 268 ~~~nA~~IA~~L~~~----p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~-------------~~~~~~f~~~L 330 (396)
T COG0626 268 HNENALKIAEFLADH----PKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN-------------EEAAKKFLDSL 330 (396)
T ss_pred HHHHHHHHHHHHhcC----CCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC-------------hHHHHHHHHhC
Confidence 666666666766663 2211 122478899999953 14456666666
Q ss_pred HHcCeEeccCCCcc---------------------------eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 372 LEEGVYFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 372 ~~~Gi~v~~~~~~~---------------------------~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+--.+-.+-|+... +|++. --|+++.+++-|+++++.
T Consensus 331 ~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSV--GlEd~eDLi~Dl~~Al~~ 394 (396)
T COG0626 331 KLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSV--GLEDVEDLIADLEQALAK 394 (396)
T ss_pred CccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEe--cCCCHHHHHHHHHHHHHh
Confidence 65444444443211 34432 235667777777777764
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-12 Score=114.29 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=137.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCC
Q 015230 78 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 157 (411)
Q Consensus 78 ~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 157 (411)
+..+.+.+++.. +..+++..+||..|+..++..+ .+.++++++.+..|.|.......... .
T Consensus 79 ~~~le~~iaal~-ga~~~l~fsSGmaA~~~al~~L--~~~g~~iV~~~~~Y~gT~~~l~~~~~----------------~ 139 (409)
T KOG0053|consen 79 RDVLESGIAALE-GAAHALLFSSGMAAITVALLHL--LPAGDHIVATGDVYGGTLRILRKFLP----------------K 139 (409)
T ss_pred hHHHHHHHHHHh-CCceEEEecccHHHHHHHHHHh--cCCCCcEEEeCCCcccHHHHHHHHHH----------------H
Confidence 455555555555 6666888889999999999753 35678889998888875433211111 1
Q ss_pred CCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccc
Q 015230 158 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 237 (411)
Q Consensus 158 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~ 237 (411)
.+.....+..+|+++++++++ +++.+|++|.+.|+...+.+ +++|+++|+++|+++|+|++.++ +...
T Consensus 140 ~gie~~~vd~~~~~~~~~~i~---~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~-----p~~~ 207 (409)
T KOG0053|consen 140 FGGEGDFVDVDDLKKILKAIK---ENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGS-----PYNQ 207 (409)
T ss_pred hCceeeeechhhHHHHHHhhc---cCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCc-----cccc
Confidence 222334443345666666665 47999999999998888888 99999999999999999999973 2344
Q ss_pred cccCCCcchh--hhhhhccCC--ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 238 EYFGVTPDLT--TLGKIIGGG--LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 238 ~~~~~~~d~~--~~sK~~~~G--~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
+.+.+..|++ |.+|.++|. .-.|.++.+ +++...+.... ..--+..+|+.+.-....++.+. -..++..+
T Consensus 208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~---~~lg~~~~p~~~~ll~Rglktl~--lRi~~~~e 282 (409)
T KOG0053|consen 208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQ---EDLGWCEDPFDLFLLSRGLKTLH--LRINKHSE 282 (409)
T ss_pred ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHH---HHhcCCCCHHHHHHHhcCcchhh--hhHHHHHH
Confidence 4455556766 688999974 446666775 77777665211 22345667777777665554332 11233344
Q ss_pred HHHHHHHHHHH
Q 015230 313 ITGELTQGIID 323 (411)
Q Consensus 313 ~~~~~~~~l~~ 323 (411)
++..+.+.|++
T Consensus 283 na~~~A~~Le~ 293 (409)
T KOG0053|consen 283 NALKIALLLEA 293 (409)
T ss_pred HHHHHHHHhhh
Confidence 44444444444
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-11 Score=114.09 Aligned_cols=286 Identities=16% Similarity=0.067 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHhhCC-CC----CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh--------cCC
Q 015230 75 CLLENVLAEMVISAVP-SI----EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK--------AGS 141 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~~----~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--------~g~ 141 (411)
++.+....++..+.++ .. -+ +...||+.|+.+++... ..+++.|+..+..+-|+..-.... .|.
T Consensus 193 D~iE~la~era~~lF~~~~~~~gaN-VQp~SGs~AN~aV~~AL--l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~ 269 (586)
T PLN02271 193 DQIERLCCERALAAFGLDSEKWGVN-VQPYSCTSANFAVYTGL--LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASI 269 (586)
T ss_pred HHHHHHHHHHHHHHhCCcccccccc-eeeccHHHHHHHHHHHh--cCCCCEEEEecCCCCCchhcccccccccccccccc
Confidence 3444444555556664 22 22 33448999999999643 567788999888777664432111 111
Q ss_pred CCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCE
Q 015230 142 GVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGAL 219 (411)
Q Consensus 142 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~ 219 (411)
.+..+++.. ..+.. |++++++.... .++++|++...... ...+ +++++++|+++|++
T Consensus 270 ~~~~vpY~~d~~~g~I-------------Dyd~lek~a~~--~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~ 328 (586)
T PLN02271 270 FFESLPYKVNPQTGYI-------------DYDKLEEKALD--FRPKILICGGSSYP--REWD----YARFRQIADKCGAV 328 (586)
T ss_pred eEEEEEcccccccCcc-------------CHHHHHHHhhh--cCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCE
Confidence 111111110 11111 89999986553 47888888663333 3345 99999999999999
Q ss_pred EEEecccc-cc-ccccC-ccccccCCCcchh--hhhhhccCCccc-ccccccHH--------------------HHHHhc
Q 015230 220 LIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPV-GAYGGRRD--------------------IMEMVA 273 (411)
Q Consensus 220 li~De~~~-g~-~~g~~-~~~~~~~~~~d~~--~~sK~~~~G~~~-g~~~~~~~--------------------~~~~~~ 273 (411)
+++|-+|. |+ ..+.. ..++ ..|++ |..|++.| |- |.+..+++ +.+.+.
T Consensus 329 LmvD~AH~aGLIa~g~~~sP~~----~aDvvt~TTHKtLrG--PrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~ 402 (586)
T PLN02271 329 LMCDMAHISGLVAAKECVNPFD----YCDIVTSTTHKSLRG--PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKIN 402 (586)
T ss_pred EEEECcccccccccCcCCCCCc----CCcEEEeCCcccCCC--CCceEEEecccccccccCCccccccccccHHHHHHhh
Confidence 99999996 66 33311 1111 24655 56799976 43 44454542 334443
Q ss_pred CC-CCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEecC
Q 015230 274 PA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEG 348 (411)
Q Consensus 274 ~~-~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 348 (411)
.. .+.+.+++.... .++...+++.... ++..+++.++.+.+.+.|.+. ++.....+ ...++++++...
T Consensus 403 ~aVfPglqgGphn~~---IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~----G~~vv~ggTdnHlvLvDl~~~ 475 (586)
T PLN02271 403 FAVFPSLQGGPHNNH---IAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR----KCRLVTGGTDNHLLLWDLTTL 475 (586)
T ss_pred cccCCccccChhHHH---HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC----CCeEeeCCCCcceeeecCccc
Confidence 21 123333332222 2333333443332 556777888888888888776 33221111 245778877432
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---------Ccceee------ecCCCHHHHHHHHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------~~~~~~------~~~~t~~~i~~~i~~l~~~~~ 409 (411)
. .+.....+.|.+-||.+.... ...+|+ .....+++++++.+.|.++++
T Consensus 476 g------------~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 476 G------------LTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred C------------CCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 2 122566677777799885431 123666 245567888888777777654
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-11 Score=110.15 Aligned_cols=343 Identities=14% Similarity=0.066 Sum_probs=174.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCCC---CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~~---~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al 109 (411)
....++|+.+-.++ +.+.++...++..+. .|.. ..++++++++.+ +.++++++++|+.|+..++
T Consensus 43 ~~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~vAe~l-----G~e~aV~v~sGTaAl~ll~ 110 (460)
T PRK13237 43 SEDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEAYAGSRNFYHLEETVQEYY-----GFKHVVPTHQGRGAENLLS 110 (460)
T ss_pred cCcEEEECcccCCc-------hhccHHHHHHHhhcchhhcCCCcHHHHHHHHHHHH-----CCCeEEEeCCHHHHHHHHH
Confidence 45678999988554 223333223333322 2332 234445555555 7788999999999999864
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC-CCCCCCceeecCCC-CHHHHHHHHHcC-CCcEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV-PKGATYETLTAPFN-DVSALENLFENN-KGEIAA 186 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-d~~~l~~~~~~~-~~~~~~ 186 (411)
.+ . .++++++ ..+.+...+.......|. ........... +.. ......+ |++.+++.++.. ..+++.
T Consensus 111 ~l--~-v~pGd~V-p~n~~f~Tt~ahI~~~Ga--~fvDi~~d~a~~~~~----~~p~tgnlD~d~Le~~I~~~~~~~~~l 180 (460)
T PRK13237 111 RI--A-IKPGQYV-PGNMYFTTTRYHQELNGG--IFVDIIIDEAHDAQS----DHPFKGNVDLDKLQALIDEVGAENIAY 180 (460)
T ss_pred Hh--C-CCCcCEE-CCccchHhhHHHHHhCCc--EEEeeeccccccccc----CCCCCCCcCHHHHHHHhccccCCccCc
Confidence 42 2 3334443 333333333332333333 11111000000 000 0000111 899999999853 234444
Q ss_pred EEEc-ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-c---c-cc--ccCcccc------ccCCCcchh--hhh
Q 015230 187 IILE-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F-RL--AYGGAQE------YFGVTPDLT--TLG 250 (411)
Q Consensus 187 vi~~-~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g---~-~~--g~~~~~~------~~~~~~d~~--~~s 250 (411)
+.++ ++|..||.. .+.+.+++|.++|++||+.||.|.++. | | +. ....... ...-.-|++ |+.
T Consensus 181 V~a~itvn~~GGqp-vs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~ 259 (460)
T PRK13237 181 ICLAVTVNLAGGQP-VSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGK 259 (460)
T ss_pred eEEEEecccCCCee-CCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCC
Confidence 4443 444444543 333449999999999999999999996 3 2 11 1110000 001123544 555
Q ss_pred hhccCCccc-ccccc-cHHHHHHhcCCCCcccc-cCCCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 015230 251 KIIGGGLPV-GAYGG-RRDIMEMVAPAGPMYQA-GTLSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 251 K~~~~G~~~-g~~~~-~~~~~~~~~~~~~~~~~-~t~~~~-~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
|.+.. ++ |+++. ++++++.++.....+-+ .|+++- .--+.+....++...+++..++.-+..+++.+.|++.
T Consensus 260 K~~~~--~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~-- 335 (460)
T PRK13237 260 KDCLV--NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA-- 335 (460)
T ss_pred CCCCC--CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC--
Confidence 76664 55 45544 67778877643222212 233332 1122222223333333455566666777888887765
Q ss_pred hcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEecc------CC-----C------cceee
Q 015230 327 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAP------SQ-----F------EAGFT 388 (411)
Q Consensus 327 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~------~~-----~------~~~~~ 388 (411)
+++...+..|.-++++.... .+.+. ...=-+..++-.|. +-||-..- +. . -.+|+
T Consensus 336 --Gvpv~~p~ggH~v~vda~~~-lph~~----~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rl 408 (460)
T PRK13237 336 --GVPIVEPVGGHAVFLDARRF-LPHLP----QDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRL 408 (460)
T ss_pred --CCceecCCCceEEEEEhHHh-CCCCC----cccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeee
Confidence 55444455677778876441 01111 11112345555554 44664421 11 0 11454
Q ss_pred --e-cCCCHHHHHHHHHHHHHHHHh
Q 015230 389 --S-LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 --~-~~~t~~~i~~~i~~l~~~~~~ 410 (411)
| -.-|.+++|...++|..+.++
T Consensus 409 aiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 409 TIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred ccccccccHHHHHHHHHHHHHHHHh
Confidence 3 455889999999999877653
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-11 Score=111.63 Aligned_cols=320 Identities=10% Similarity=-0.008 Sum_probs=191.0
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCC-------CCCC----CHHHHHHHHHHHhhCCC---CCEEEEeCChHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTS-------FGAP----CLLENVLAEMVISAVPS---IEMVRFVNSGTE 103 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~-------~~~~----~~~~~~l~~~l~~~~~~---~~~v~~~~~g~~ 103 (411)
.+.|..+ |.. .+++|++++.+.+-+... .+.. .+...++.+.|.+.++- .+-+++..||+.
T Consensus 8 ~~~f~pG----P~~-lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~ 82 (365)
T PLN02452 8 VFNFSAG----PAT-LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST 82 (365)
T ss_pred eEeeeCC----CCC-CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH
Confidence 4555554 322 688999999887654211 1111 34556677777777752 234556678999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh-cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
++++++.-+ ..+++++++...+..|....-.+. .|. ............. . ..+++++ +. ..
T Consensus 83 ~~ea~~~nl--~~~~~~~l~~~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~--------~--~~~~~~~----~~-~~ 144 (365)
T PLN02452 83 QFAAIPLNL--CKPGDKADFVVTGSWSKKAAKEAKKYCK-TNVIASGKDEKYT--------K--IPSVSEW----EL-TP 144 (365)
T ss_pred HHHHHHHhc--CCCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCCCC--------C--CCChHHc----CC-CC
Confidence 999988742 235567777777766644333322 232 2211111011100 0 0144443 22 23
Q ss_pred cEEEEEEcccCCCCCc-cCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccC-Ccccc
Q 015230 183 EIAAIILEPVVGNSGF-IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVG 260 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~-~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~-G~~~g 260 (411)
+...+.+.++...+|+ +.+ ++++. ++++|+|-+++ + .+....++.+++ |+.+..|.++. | +|
T Consensus 145 ~~~~v~~~hnETstGv~~~~----~~~i~------~~~lvVDa~Ss-~-g~~pidv~~~~v--~~~saqK~lGP~G--l~ 208 (365)
T PLN02452 145 DAKFVHICANETIHGVEFKD----YPDVG------NVPLVADMSSN-F-LSKPVDVSKYGV--IYAGAQKNVGPSG--VT 208 (365)
T ss_pred CCcEEEECCCCCCCcEecCc----ccccC------CCeEEEECCcc-c-cCcccCHHHcCE--EEEecccccCCCC--eE
Confidence 5778888888888898 465 55553 38999999996 1 123333444544 67788999962 3 78
Q ss_pred cccccHHHHHHhcCCCCccc--------ccC-CCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 261 AYGGRRDIMEMVAPAGPMYQ--------AGT-LSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~--------~~t-~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
.++.++++++......+.+. .++ ++++..+..+..++++.+.+ +++.++.+++.+++++.|++...-
T Consensus 209 ~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~ 288 (365)
T PLN02452 209 IVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF 288 (365)
T ss_pred EEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88999999877653222111 112 36667777777788887765 356667777777777777764100
Q ss_pred cCCceEEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHH
Q 015230 328 AGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTIT 402 (411)
Q Consensus 328 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~ 402 (411)
+....+.. .....+.|.+.+ ....+++.+.++++|++..+|.. ..+|++ -.++.++++++++
T Consensus 289 y~~~~~~~~rs~~~vsF~~~~-------------~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~ 355 (365)
T PLN02452 289 YVCPVEKSVRSLMNVPFTLGG-------------SELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVA 355 (365)
T ss_pred ccCCCChHHhCCeEEEEEcCC-------------chhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHH
Confidence 11111111 223455555532 23458999999999999988741 236774 4668999999999
Q ss_pred HHHHHHH
Q 015230 403 AAEKVLR 409 (411)
Q Consensus 403 ~l~~~~~ 409 (411)
.+++.-+
T Consensus 356 ~m~~f~~ 362 (365)
T PLN02452 356 FMKDFQA 362 (365)
T ss_pred HHHHHHH
Confidence 9988754
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=108.69 Aligned_cols=278 Identities=16% Similarity=0.120 Sum_probs=170.3
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
.+.|.|||.|+..+-.......+...|-+.+|++. ++.......|..+...++-+...-.. |.+.+-
T Consensus 97 t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~-NH~~If~~aGl~v~~Y~Yyd~~~~~~------------df~~ml 163 (396)
T COG1448 97 TVQTLGGTGALRVAADFLARFFPDATVWISDPTWP-NHKAIFEAAGLEVETYPYYDAETKGL------------DFDGML 163 (396)
T ss_pred heecCCcchHHHHHHHHHHHhCCCceEEeCCCCcH-hHHHHHHhcCCceeeeeccccccccc------------cHHHHH
Confidence 37889999999998877666667777888888886 55566666676665544322221100 888888
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc---cCcccccc-CCCcc-h--h
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA---YGGAQEYF-GVTPD-L--T 247 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g---~~~~~~~~-~~~~d-~--~ 247 (411)
..+++.+.....++-.+-+|++| +.++.+.+++|.++.++.+.+.++|=+|=||..| ...+...+ ...+. + .
T Consensus 164 a~L~~a~~~~vvLLH~CcHNPTG-~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~ 242 (396)
T COG1448 164 ADLKTAPEGSVVLLHGCCHNPTG-IDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVAS 242 (396)
T ss_pred HHHHhCCCCCEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEe
Confidence 88887655544444444555555 5567778999999999999999999999888222 11111111 11222 2 2
Q ss_pred hhhhhccC-Ccccccc-c--ccHHHHHHhcCCCCcccccCCCC-CHHHHHHHHHHHH------HHhc--CChHHHHHHHH
Q 015230 248 TLGKIIGG-GLPVGAY-G--GRRDIMEMVAPAGPMYQAGTLSG-NPLAMTAGIHTLK------RLKE--PGTYEYLNKIT 314 (411)
Q Consensus 248 ~~sK~~~~-G~~~g~~-~--~~~~~~~~~~~~~~~~~~~t~~~-~~~~~a~~~~~l~------~~~~--~~~~~~~~~~~ 314 (411)
|+||.|+= |-|+|++ + -+++..+.+...-....=++++. +...+.+....|+ .++. +.+++++.+++
T Consensus 243 S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR 322 (396)
T COG1448 243 SFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMR 322 (396)
T ss_pred hhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999984 8899976 2 24444444431100001112222 2233333332222 2222 67777888888
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee-cCCC
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS-LAHS 393 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~-~~~t 393 (411)
+.+.+.|++......+.......|+|...-+. .+++.+...+.||++..++ |++ ...+
T Consensus 323 ~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls-----------------~~QV~rLree~~IY~v~sG----Ri~vaGl~ 381 (396)
T COG1448 323 QALVDALKALGAPRNFDFIISQRGMFSYTGLS-----------------PEQVDRLREEFGIYLVASG----RINVAGLN 381 (396)
T ss_pred HHHHHHHHhhCCCcccchHhhcCceeecCCCC-----------------HHHHHHHHHhccEEEecCC----eeeeccCC
Confidence 88888887754432333334556666444221 1455555566699998876 664 4668
Q ss_pred HHHHHHHHHHHHHH
Q 015230 394 SDDIQHTITAAEKV 407 (411)
Q Consensus 394 ~~~i~~~i~~l~~~ 407 (411)
+.+++.+.+.+.++
T Consensus 382 ~~ni~~va~ai~~v 395 (396)
T COG1448 382 TSNIDYVAKAIAAV 395 (396)
T ss_pred hhhHHHHHHHHHhh
Confidence 89999999998875
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=113.07 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
....+++.+.+++.. +.+.++.++||+.|+.+++... ..+++.||+....|.+.+........
T Consensus 63 ~P~~~~lE~~la~le-g~~~av~~sSG~aAi~~al~al--l~~GD~Vl~~~~~yg~t~~~~~~~~~-------------- 125 (384)
T PRK06434 63 NPTVQAFEEKYAVLE-NAEHALSFSSGMGAITSAILSL--IKKGKRILSISDLYGQTFYFFNKVLK-------------- 125 (384)
T ss_pred ChhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCccchHHHHHHHHHH--------------
Confidence 455677788887777 4567889999999999999743 45677888876666554433211110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
..+..+..++.++.+.++ ++ ++++++|++|...|+++.+.+ +++|.++|++++ +++|.+++. .
T Consensus 126 --~~Gi~v~fvd~~~~~~~~--l~--~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s-----~ 188 (384)
T PRK06434 126 --TLGIHVDYIDTDRLNSLD--FD--PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS-----P 188 (384)
T ss_pred --hcCcEEEEECCCChhhee--ec--CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC-----c
Confidence 011223333332333332 22 346889999998888888877 999999999998 466999851 1
Q ss_pred ccccccCCCcchh--hhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d~~--~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
......+...|++ |.+|.++| | .-.|.++. ++++.+.+.... .......+++.++.+...++.+ +...++
T Consensus 189 ~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~---~~~G~~~~~~~A~l~~~gL~tL--~~R~~r 263 (384)
T PRK06434 189 YNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERR---KTLGSNPDPIQAYLALRGLKTL--GLRMEK 263 (384)
T ss_pred ccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHH---HhcCCCCCHHHHHHHHhCCCcH--HHHHHH
Confidence 1112223345654 66799986 4 33455555 455555544211 1112334666666655554433 445667
Q ss_pred HHHHHHHHHHHHHHHHHhcCCce------------EEeeecceEEEEEe
Q 015230 310 LNKITGELTQGIIDAGKKAGHAI------------CGGYISGMFGFFFT 346 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~g~~~~~~~~ 346 (411)
.+++...+.+.|+.. |.+. ...+.|.++.|++.
T Consensus 264 ~~~~a~~~a~~L~~~----p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 264 HNKNGMELARFLRDS----KKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred HHHHHHHHHHHHHcC----CCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 777777777777764 3221 12356889999884
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-11 Score=113.72 Aligned_cols=269 Identities=19% Similarity=0.136 Sum_probs=170.7
Q ss_pred CcHHHHHHHHHHHHcCC----CCCCCCHHHHHHHHHHHhhCCC--CCEEEEeCChHHHHHHHHHHHHhccC---------
Q 015230 53 ADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTG--------- 117 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~----~~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~g~~a~~~al~~~~~~~~--------- 117 (411)
.++...+++...+.... .+......++++..++++.++. .-.-.||.|||||+..++.+++....
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~ 153 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK 153 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 56677777777777732 2334577789999999999973 34568999999999999988764321
Q ss_pred --CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 118 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 118 --~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
+...|+.+...|....-++...|-+....+........ |++++++++++..... +|+.......
T Consensus 154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~i-------------d~~~l~~~i~~~t~~g-~vV~~aGtT~ 219 (460)
T COG0076 154 PGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRI-------------DVDALEEAIDENTIGG-VVVGTAGTTD 219 (460)
T ss_pred cCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCcccc-------------CHHHHHHHHHhhccCc-eEEEEecCCC
Confidence 12257777888888888888888766664443221111 8999999999642111 3666677777
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc-c-cCccccccCCC-cchh--hhhhhccCCcccccccccHH--
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-A-YGGAQEYFGVT-PDLT--TLGKIIGGGLPVGAYGGRRD-- 267 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~-g-~~~~~~~~~~~-~d~~--~~sK~~~~G~~~g~~~~~~~-- 267 (411)
.|.+-| +++|.++|++|++++++|.++.|+ .. . ....+ .+++. .|-+ .+-|....-.+.|++..+.+
T Consensus 220 ~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~-~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~ 294 (460)
T COG0076 220 TGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW-DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEA 294 (460)
T ss_pred CCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchh-hcCCCCceEEEECcccccCCCCCceEEEEECHHH
Confidence 888888 999999999999999999999988 32 1 11110 12332 3433 45687765556888877544
Q ss_pred HHHHhcCCCCccccc------CC--CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcC-CceEEe
Q 015230 268 IMEMVAPAGPMYQAG------TL--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG-HAICGG 335 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~------t~--~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 335 (411)
+.+.+.. ...+..+ +. +.+....++....+..+.. .++.++..++.+++.+.|++. + +.....
T Consensus 295 l~~~~~~-~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~----~~~e~~~~ 369 (460)
T COG0076 295 LRRILIF-ADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL----GDFELVNE 369 (460)
T ss_pred hhhhhhc-ccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC----CCcEeecC
Confidence 3333331 1111110 11 1112233334444555532 566677778888888888876 3 222223
Q ss_pred eecceEEEEE
Q 015230 336 YISGMFGFFF 345 (411)
Q Consensus 336 ~~g~~~~~~~ 345 (411)
+....+.|.+
T Consensus 370 p~l~~V~fr~ 379 (460)
T COG0076 370 PELPIVAFRL 379 (460)
T ss_pred CccceEEEEc
Confidence 4556677766
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=119.78 Aligned_cols=312 Identities=8% Similarity=-0.021 Sum_probs=175.0
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPG 153 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~ 153 (411)
+....+..+..++.++.....+.+||.|.++.+++.. ..++++.|.++...|-+...++.++|..+.++.-. ...+
T Consensus 204 ~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a---~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~G 280 (755)
T PRK15029 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA---CMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYG 280 (755)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHH---hcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccC
Confidence 4444555556666675555667777788888776663 33444455566677777777888888766554321 1222
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcE--------EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEI--------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~--------~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
++. .....+-+++.++++++++++.. ++++++|.+ .|...+ +++|.++|++++++|++||+
T Consensus 281 i~~-----~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEA 349 (755)
T PRK15029 281 IIG-----PIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_pred Ccc-----CCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEEECc
Confidence 211 00111114899999998876544 567776755 688888 99999999999999999999
Q ss_pred cccc-ccccCc----ccc--ccC-CCcc-hh--hhhhhccCCcc-ccccccc--------HHHHHHhcCCCCcccccCCC
Q 015230 226 MTGF-RLAYGG----AQE--YFG-VTPD-LT--TLGKIIGGGLP-VGAYGGR--------RDIMEMVAPAGPMYQAGTLS 285 (411)
Q Consensus 226 ~~g~-~~g~~~----~~~--~~~-~~~d-~~--~~sK~~~~G~~-~g~~~~~--------~~~~~~~~~~~~~~~~~t~~ 285 (411)
|.+. ...+.+ ++. ... ..+| ++ |.-|.+++ +. .+++-.+ +++.+.+. ...|.+
T Consensus 350 hGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~------~~qSTS 422 (755)
T PRK15029 350 WYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYM------MHATTS 422 (755)
T ss_pred cccccccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHH------HHcCCC
Confidence 9643 333322 221 001 3466 54 56687764 33 3344221 12222222 222444
Q ss_pred CCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhc------------CC--------------------
Q 015230 286 GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA------------GH-------------------- 330 (411)
Q Consensus 286 ~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~------------~~-------------------- 330 (411)
++-+-++..-.+...++. +++.++..+....+++.++++..++ +.
T Consensus 423 PSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 502 (755)
T PRK15029 423 PLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKL 502 (755)
T ss_pred cHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhh
Confidence 555555554444444442 5667778888888888887763210 00
Q ss_pred ------ceEEee----ec------ceEEEEEecCCCC--Ccch--hcccchHHHHHHHHHHHHcCeEeccCCCcce-e-e
Q 015230 331 ------AICGGY----IS------GMFGFFFTEGPVY--NFED--AKKSETTKFARFYRGMLEEGVYFAPSQFEAG-F-T 388 (411)
Q Consensus 331 ------~~~~~~----~g------~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~-~-~ 388 (411)
.+.... .| .+..++..+..+. .++. .....+.-+..+.+.|.++||.+--.....+ . +
T Consensus 503 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~ 582 (755)
T PRK15029 503 LTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLF 582 (755)
T ss_pred hccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEe
Confidence 000000 00 0000111000000 0000 0000111234789999888999988765554 3 3
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q 015230 389 SLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~ 407 (411)
+...|++++++++++|.++
T Consensus 583 s~g~t~~~~~~L~~aL~~~ 601 (755)
T PRK15029 583 SMGVTRGKWGTLVNTLCSF 601 (755)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999865
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=116.85 Aligned_cols=197 Identities=23% Similarity=0.177 Sum_probs=121.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 132 (411)
.+|++.+++.++. .+....+.++...++.+.+++.+ +.+..+|++||+.|+..+++... .+...||+...+ |-..
T Consensus 7 ~~~~m~~a~~~a~-~gd~~Yg~D~~~~~l~~~i~~l~-g~e~a~f~~sGT~An~~al~~~~--~~~~~vi~~~~a-Hi~~ 81 (290)
T PF01212_consen 7 PTPAMLEAMAAAN-VGDDAYGEDPTTARLEERIAELF-GKEAALFVPSGTMANQLALRAHL--RPGESVICADTA-HIHF 81 (290)
T ss_dssp S-HHEEHHHHHTT-SB-CCTTSSHHHHHHHHHHHHHH-TSSEEEEESSHHHHHHHHHHHHH--HTTEEEEEETTE-HHHH
T ss_pred CCHHHHHHHHccc-cCCcccCCChhHHHHHHHHHHHc-CCCEEEEeCCCChHHHHHHHHHH--hcCCceeccccc-eeee
Confidence 6899999995543 33323345777788888888888 55677899999999999998542 345556665553 3221
Q ss_pred --hhh-hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 133 --DPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 133 --~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
..+ ....|..+..++.... +.. |++++++.++. |..++++|.++..++..|...++.+.+
T Consensus 82 ~E~ga~~~~~G~~~~~l~~~~~-G~l-------------~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el 147 (290)
T PF01212_consen 82 DETGAIEELSGAKLIPLPSDDD-GKL-------------TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEEL 147 (290)
T ss_dssp SSTTHHHHHTTCEEEEEBECTG-TBB--------------HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHH
T ss_pred eccchhhHhcCcEEEECCCccc-CCC-------------CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHH
Confidence 122 2334443333222211 222 89999999987 345789999998887755566667779
Q ss_pred HHHHHHHHHhCCEEEEecccccc---ccccCccccccCCCcchh--hhhhhccCCcccccc-cccHHHHHHh
Q 015230 207 NAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEMV 272 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~---~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~-~~~~~~~~~~ 272 (411)
++|.++|++||++|+.|.+.-.- ..+.. ..+.. -..|++ +++|.++ .+.|.+ +++++.++..
T Consensus 148 ~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~-~~e~~-~~~D~v~~~~tK~~g--~~~Gavl~~~~~~i~~~ 215 (290)
T PF01212_consen 148 RAISELAREHGLPLHMDGARLANAAAALGVS-LAEIA-AGADSVSFGGTKNGG--APGGAVLAGNKEFIAKA 215 (290)
T ss_dssp HHHHHHHHHHT-EEEEEETTHHHHHCHHHHH-HHHHH-TTSSEEEEETTSTT---SSSEEEEEESHHHHHHH
T ss_pred HHHHHHHHhCceEEEEehhhHHHhhhccccc-HHHHh-hhCCEEEEEEEcccc--cccceEEEechHHHHHH
Confidence 99999999999999999886311 11111 11111 234555 5566555 377766 6788865443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=103.76 Aligned_cols=296 Identities=17% Similarity=0.188 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHhhCCCCCEEE-EeCChHHHHHHHHHHHHhc-----cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVR-FVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 148 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~-~~~~g~~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~ 148 (411)
-+...+|.+||.++. +.|.|. .-++|+++=.+.|.+.++| ....+++..+.+.||.-.+.+++.|-.+..+.+
T Consensus 108 l~li~~Lq~~L~~IT-G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~ 186 (496)
T COG1003 108 LELIYELQEWLKEIT-GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKC 186 (496)
T ss_pred HHHHHHHHHHHHHhc-CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEec
Confidence 455678888888887 666665 4557888888877766665 224567777889999888888888887777666
Q ss_pred CCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-
Q 015230 149 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT- 227 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~- 227 (411)
.....+ |+++|++... ++++++++.-. |.-|.+.. + +.+|+++.+++|..|+.|.+-.
T Consensus 187 ~~~G~V--------------DlddLk~k~~---~~~AalMiTnP-sT~GvFE~--~-I~ei~~ivH~~Gg~vY~DGANlN 245 (496)
T COG1003 187 DENGNV--------------DLDDLRAKAE---DNLAALMITNP-STLGVFEE--D-IREICEIVHEAGGQVYYDGANLN 245 (496)
T ss_pred CCCCCc--------------cHHHHHHHhc---cceeEEEeccC-cccccchh--h-HHHHHHHHHHcCCEEEecCcchh
Confidence 544444 9999999887 57787777532 33465542 2 9999999999999999999873
Q ss_pred ---cc-ccccCccccccCCCcchh--hhhhhc----cCCcc-cccccccHHHHHHhcCC----CC------------ccc
Q 015230 228 ---GF-RLAYGGAQEYFGVTPDLT--TLGKII----GGGLP-VGAYGGRRDIMEMVAPA----GP------------MYQ 280 (411)
Q Consensus 228 ---g~-~~g~~~~~~~~~~~~d~~--~~sK~~----~~G~~-~g~~~~~~~~~~~~~~~----~~------------~~~ 280 (411)
|. |+|.++ .|++ -+-|+| |||-| +|-+.+.+.++..+..- .. ..-
T Consensus 246 A~vG~~rPGd~G--------~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~ 317 (496)
T COG1003 246 AIVGLARPGDMG--------FDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGV 317 (496)
T ss_pred hhhccccccccc--------cceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCcccee
Confidence 55 555432 2333 234555 44445 77777777666655420 00 001
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhc
Q 015230 281 AGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 357 (411)
Q Consensus 281 ~~t~~~~~~~~a~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 357 (411)
...+-++......+.+.+..+..+ +.-+...-+++|+..+|+.. +++... +.. .+.-++.-. .++ .+
T Consensus 318 ~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~---y~~~y~--~~~-~~~HE~ild-~r~---l~ 387 (496)
T COG1003 318 SAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY---YPVPYT--GEN-RVAHECILD-ARP---LK 387 (496)
T ss_pred eccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc---CccccC--CCC-cceeEEEee-chH---hH
Confidence 223344555555566666665543 33345666778888888763 333221 111 223332110 000 11
Q ss_pred ccchHHHHHHHHHHHHcCeEeccCCCcce-----ee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 358 KSETTKFARFYRGMLEEGVYFAPSQFEAG-----FT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 358 ~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~-----~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...+.....+++.|.+.|+....-.++.+ -+ .-.-+++++|++++++.++.++
T Consensus 388 ~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 388 KETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred hhcCCcHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12334557899999999998776665532 22 2355789999999999887664
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-09 Score=97.63 Aligned_cols=323 Identities=14% Similarity=0.118 Sum_probs=188.9
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcC-------CCC-C---CCCHHHHHHHHHHHhhCCCCCEE-EEeCChHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-------TSF-G---APCLLENVLAEMVISAVPSIEMV-RFVNSGTEA 104 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-------~~~-~---~~~~~~~~l~~~l~~~~~~~~~v-~~~~~g~~a 104 (411)
.-|.+++. =++.++.+++|....+.+- ..| + +.+..+....++..++++ .+.+ +.-.||++|
T Consensus 27 ~~ieLIAS-----EN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg-a~~anVQPhSGs~A 100 (413)
T COG0112 27 EHIELIAS-----ENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG-AEYANVQPHSGSQA 100 (413)
T ss_pred hceeeeec-----cccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC-CCccccCCCCchHH
Confidence 44666655 2246889999998888881 111 1 225555555566666775 3322 344589999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhh--hhhcCCCCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+.+++.. ...+++.|+..+-+.-|+..-. ...+|.....++++.. .+.. |.|++++...++
T Consensus 101 N~av~~A--ll~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~I-------------DyD~~~k~a~e~ 165 (413)
T COG0112 101 NQAVYLA--LLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLI-------------DYDEVEKLAKEV 165 (413)
T ss_pred HHHHHHH--HcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCcc-------------CHHHHHHHHHHh
Confidence 9998874 3456778887777665544222 1222322122222111 1111 899999998875
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCC
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG 256 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G 256 (411)
++++|++-. +...-..+ +++++++|++.|++|++|-+|. |+ -.|.+- +.... .|++ |.-|+|-|
T Consensus 166 --kPK~ii~G~--SaY~r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p--~P~~~-AdvVTtTTHKTlrG- 233 (413)
T COG0112 166 --KPKLIIAGG--SAYSRPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGVHP--NPLPH-ADVVTTTTHKTLRG- 233 (413)
T ss_pred --CCCEEEECc--cccccccC----HHHHHHHHHHhCceEEehHHHHHHHHhcccCC--CCCCc-cceEeCCcccCCCC-
Confidence 677777732 22222334 9999999999999999999994 77 444321 11111 4555 56699985
Q ss_pred ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHH-HHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 257 LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL-KRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 257 ~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
-|-|.+.++ +++.+.+.. ..+.+..-++.....|+-..++ +.++. ++..+++.++++.+.+.|.+. ++..
T Consensus 234 PrGG~Il~~~eel~kkin~--aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~----G~~v 307 (413)
T COG0112 234 PRGGIILTNDEELAKKINS--AVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER----GFKV 307 (413)
T ss_pred CCceEEEeccHHHHHHhhh--hcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc----CCeE
Confidence 145555666 478888774 1222212122222333322233 33332 566678888999999888875 3222
Q ss_pred EEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------cceee--e----cCCCHH
Q 015230 333 CGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFT--S----LAHSSD 395 (411)
Q Consensus 333 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----------~~~~~--~----~~~t~~ 395 (411)
-..+ ...++.+++.+. ....+...+.|.+-||.+.-..- ..+|+ + ....++
T Consensus 308 vsGgTdnHl~lVDl~~~------------~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~ 375 (413)
T COG0112 308 VSGGTDNHLVLVDLRSK------------GLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEA 375 (413)
T ss_pred ecCCccceEEEEEcccC------------CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHH
Confidence 1111 245777777532 11235666777777998865421 12576 2 455678
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
+.+++-+.+.+++..
T Consensus 376 e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 376 EMEEIADLIADVLDG 390 (413)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888887753
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-12 Score=119.47 Aligned_cols=299 Identities=12% Similarity=0.081 Sum_probs=159.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSP 152 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 152 (411)
+.....+..+..++.++.....+.+||.|.++.+++.. ..++++.|..+...|-+...++.+.|..+.++... ...
T Consensus 64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a---~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~ 140 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMA---LCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEY 140 (417)
T ss_dssp TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHH---HTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TT
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHH---hcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCcccc
Confidence 45556666666777774444455666777777777763 33444445556666767777888888765554322 112
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE---EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIA---AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~---~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
++.. .+....-+.+.++++++++++..+ +++++|.+ .|...+ +++|.++|++++++|++||+|.+.
T Consensus 141 gi~~-----~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah 209 (417)
T PF01276_consen 141 GIIG-----GISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAHGAH 209 (417)
T ss_dssp S-BE-----EB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TT
T ss_pred CCcc-----CCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEcccccc
Confidence 2211 000000145899999999877666 77777755 688888 999999999999999999999633
Q ss_pred -ccccCccccccCCCcc-------hh--hhhhhccCCcc-ccccccc-------HHHHHHhcCCCCcccccCCCCCHHHH
Q 015230 230 -RLAYGGAQEYFGVTPD-------LT--TLGKIIGGGLP-VGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAM 291 (411)
Q Consensus 230 -~~g~~~~~~~~~~~~d-------~~--~~sK~~~~G~~-~g~~~~~-------~~~~~~~~~~~~~~~~~t~~~~~~~~ 291 (411)
.... +.........| ++ |.-|.+++ +. .+++..+ +++.+.+. ...|.+++-+-+
T Consensus 210 ~~F~~-lp~~a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~~l~------~~~TTSPSY~lm 281 (417)
T PF01276_consen 210 FGFHP-LPRSALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNEALS------MHQTTSPSYPLM 281 (417)
T ss_dssp GGCSG-GGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHHHHH------HHS-SS--HHHH
T ss_pred ccCCC-CccchhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHHHHH------HHcCCChHHHHH
Confidence 2221 11122233344 54 56688763 33 3444332 22333332 233555666666
Q ss_pred HHHHHHHHHH-hc--CChHHHHHHHHHHHHHHHHHHHHhcCCc----eEEeeec------------------ceEEEEEe
Q 015230 292 TAGIHTLKRL-KE--PGTYEYLNKITGELTQGIIDAGKKAGHA----ICGGYIS------------------GMFGFFFT 346 (411)
Q Consensus 292 a~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~g------------------~~~~~~~~ 346 (411)
+..-.+.+.+ .. +++.++..+....++++++++.....+. ..+.+.+ ....++..
T Consensus 282 ASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~ 361 (417)
T PF01276_consen 282 ASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPT 361 (417)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TT
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCc
Confidence 6655555555 22 6788889999999999997642211111 1122222 02223221
Q ss_pred cCCCCC--c--chhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCH
Q 015230 347 EGPVYN--F--EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSS 394 (411)
Q Consensus 347 ~~~~~~--~--~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~ 394 (411)
+..+.. + .......+..+..+.+.|.++||.+.-...+.+-+ +...|+
T Consensus 362 K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~ 415 (417)
T PF01276_consen 362 KLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTDLYNVLFLFTIGDTK 415 (417)
T ss_dssp EEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEESSEEEEE--TTS-H
T ss_pred EEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEeccCccEEEEecCCCCC
Confidence 111000 0 00001234566788999999999998776555432 445454
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=101.80 Aligned_cols=296 Identities=13% Similarity=0.105 Sum_probs=159.1
Q ss_pred HHHHHHHHhhCC-CCCEEEEeCChHHHHHH-HHHHHHhc-----------cCCcEEEEEeCCcCCCchhhhhhcCCCCcc
Q 015230 79 NVLAEMVISAVP-SIEMVRFVNSGTEACMG-VLRLARAF-----------TGRERIIKFEGCYHGHADPFLVKAGSGVAT 145 (411)
Q Consensus 79 ~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~-al~~~~~~-----------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~ 145 (411)
.++.+..++.++ ..++++...+.+-.+.. ++.-+..+ ..+-+.++..|+|-.++. ....-|-+ -
T Consensus 72 pe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa-i~E~~Gie--m 148 (425)
T PF12897_consen 72 PEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA-ITEHFGIE--M 148 (425)
T ss_dssp HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH-HHHHCT-E--E
T ss_pred HHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH-HHHhhCcE--E
Confidence 344444555555 67788777655544443 33222111 124579999999975432 22222221 1
Q ss_pred cCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHH-HHHhCCEEEEec
Q 015230 146 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI-TKENGALLIFDE 224 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l-~~~~~~~li~De 224 (411)
+++|....-| |++.+|+++.+. ..++.++|.|.++|...++++.|-+++++++ +...+..++.|.
T Consensus 149 i~VpM~~dGP-------------DmD~Ve~LV~~D-~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDN 214 (425)
T PF12897_consen 149 IPVPMTEDGP-------------DMDMVEELVAED-PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDN 214 (425)
T ss_dssp EEEEEETTEE--------------HHHHHHHTHTS-TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-
T ss_pred EecCCCCCCC-------------CHHHHHHHHhcC-CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeec
Confidence 1122222211 899999998765 5799999999999977788888889999998 346799999999
Q ss_pred ccc--cc-ccccCcc-cccc-----CCCcc----hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHH
Q 015230 225 VMT--GF-RLAYGGA-QEYF-----GVTPD----LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 291 (411)
Q Consensus 225 ~~~--g~-~~g~~~~-~~~~-----~~~~d----~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 291 (411)
+|+ .+ ....... .+.+ .-.|| +.|.||---+|-.++++..++.-++.+.. .....+.+.+-+.+
T Consensus 215 AY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~---~~~~~tIgpdKvNQ 291 (425)
T PF12897_consen 215 AYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKK---HLSVQTIGPDKVNQ 291 (425)
T ss_dssp TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHH---HHHHH-S---HHHH
T ss_pred CceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHH---HhcCceeCccHHHH
Confidence 996 22 1111100 1111 01344 34899943334458899888877776652 23334666677777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH-------HH-hcCC-ceEEeeecceEEEEEecCCCCCcchhcccchH
Q 015230 292 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA-------GK-KAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETT 362 (411)
Q Consensus 292 a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 362 (411)
......+...+ ..+++++++.+..++-+++.. +. ..++ .+..+..|.|++++..+ .
T Consensus 292 LRHvrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~--------------G 356 (425)
T PF12897_consen 292 LRHVRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD--------------G 356 (425)
T ss_dssp HHHHHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST--------------T
T ss_pred HHHHHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC--------------C
Confidence 66655554322 267788888888777665332 22 2233 23445568899998853 2
Q ss_pred HHHHHHHHHHHcCeEeccCCC----------cceee-ecCCCHHHHHHHHHHHHHHHH
Q 015230 363 KFARFYRGMLEEGVYFAPSQF----------EAGFT-SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 363 ~~~~~~~~l~~~Gi~v~~~~~----------~~~~~-~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.++++.+.+++.||.+.+.+. ..+|+ |..-+.++++.+++.+.-+++
T Consensus 357 ~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 357 TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp -HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999542 13788 566688999999999876643
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-10 Score=103.14 Aligned_cols=298 Identities=10% Similarity=-0.006 Sum_probs=166.9
Q ss_pred CHHHHHHHHHHHhhCCC---CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc-h-hhhhhcCCC-CcccCC
Q 015230 75 CLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA-D-PFLVKAGSG-VATLGL 148 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~---~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~-~-~~~~~~g~~-~~~~~~ 148 (411)
.+...++.+.|.+.++. .+-++++.|||.++++++..... .+++++++. + +.|.. . ......|.+ +..+..
T Consensus 38 ~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-~~g~~vLv~-g-~FG~r~~~eia~~~g~~~v~~l~~ 114 (374)
T TIGR01365 38 KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-CRGVDVLAW-E-SFGKGWVTDVTKQLKLPDVRVLEA 114 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-CCCCeEEEE-C-HHHHHHHHHHHHhcCCCCcEEEcC
Confidence 44556667777777762 23467799999999999985321 234567764 3 44433 2 222334442 344333
Q ss_pred CCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc
Q 015230 149 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g 228 (411)
++...+ |+++++. + .. +++.++..++|+..| ++++...+ +++++|+|.+-+
T Consensus 115 ~~g~~~--------------~~~~ve~--~---~~---v~~vhnETSTGv~np----v~~i~~~~--~~~lliVDavSs- 165 (374)
T TIGR01365 115 EYGKLP--------------DLKKVDF--K---ND---VVFTWNGTTSGVRVP----NGDFIPAD--REGLTICDATSA- 165 (374)
T ss_pred CCCCCC--------------CHHHcCC--C---CC---EEEecCCCchheecc----cccccccc--CCCcEEEEccch-
Confidence 322222 6777652 1 12 456666677898888 65544222 589999998886
Q ss_pred cccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCC-----c--------------c-cccCCCCCH
Q 015230 229 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-----M--------------Y-QAGTLSGNP 288 (411)
Q Consensus 229 ~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~-----~--------------~-~~~t~~~~~ 288 (411)
+ .+..+.++ +++.-+.+..|++++---+|+++.+++.++....... . . ....++++.
T Consensus 166 ~-g~~~l~~d--~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v 242 (374)
T TIGR01365 166 A-FAQDLDYH--KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSM 242 (374)
T ss_pred h-cCCCCChh--HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHH
Confidence 1 12233333 2333345788999841116777888888776542110 0 0 122345555
Q ss_pred HHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-eEEEEEecCCCCCcchhcccchHH
Q 015230 289 LAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 289 ~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
.+..+...+++.+.+ ++..++.+++.+.+++.++++............... ...+.+....+.... .....+
T Consensus 243 ~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~---~~~~~~ 319 (374)
T TIGR01365 243 LCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALD---EDAQAD 319 (374)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccc---cchhhH
Confidence 666666666765544 455566777777777777776311111100111222 333333221110000 000111
Q ss_pred -HHHHHHHHHHcCeEeccCCC----cceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 364 -FARFYRGMLEEGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 364 -~~~~~~~l~~~Gi~v~~~~~----~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..++.+.|+++||.+.++.. ..+|| ...++.++++.+++.|+=+..+
T Consensus 320 ~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 320 FAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred HHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 47899999999999997743 45788 3568999999999999866554
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-09 Score=95.48 Aligned_cols=340 Identities=14% Similarity=0.043 Sum_probs=183.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~ 112 (411)
....++|+.|-.++ +...++..+|+.. +. .|+. +....+|.+..++.+ +.+.+++|.+|..+...+++..
T Consensus 39 s~dV~IDLrSDTgT---~apS~~m~aAM~~----GDD~Y~g-dpSv~~Lee~vael~-G~E~alpthqGRgaE~Il~~~~ 109 (467)
T TIGR02617 39 SEDVFIDLLTDSGT---GAVTQSMQAAMMR----GDEAYSG-SRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVL 109 (467)
T ss_pred CCCeEEECccCCCC---CCCCHHHHHHHHc----CCccccc-CchHHHHHHHHHHHh-CCceEEECCCCchHHHHHHHhh
Confidence 44578999997443 2246677777765 32 2322 223345555565655 7888999999998888877642
Q ss_pred HhccCCcEEE------EEeCCcCCCc-hhhhhhcCCCCcccCCC---------CCCCCCCCCCCceeecCCCCHHHHHHH
Q 015230 113 RAFTGRERII------KFEGCYHGHA-DPFLVKAGSGVATLGLP---------DSPGVPKGATYETLTAPFNDVSALENL 176 (411)
Q Consensus 113 ~~~~~~~~vi------~~~~~~~~~~-~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (411)
.. .+++.++ +....+|..+ .+....+|..+..+..+ .+.|.. |++++++.
T Consensus 110 ~~-~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~-------------dl~~le~~ 175 (467)
T TIGR02617 110 IK-KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNF-------------DLEGLERG 175 (467)
T ss_pred cc-cccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCc-------------CHHHHHHH
Confidence 11 1122222 1122333332 33455556543332211 111211 89999999
Q ss_pred HHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc----cc-cc---c--cCccc----cccC
Q 015230 177 FENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT----GF-RL---A--YGGAQ----EYFG 241 (411)
Q Consensus 177 ~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~----g~-~~---g--~~~~~----~~~~ 241 (411)
++.+. +++..+...-.+|..|..+.+.+.+++++++|++||++++.|.+.. -| .. + ..... +.+.
T Consensus 176 I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~ 255 (467)
T TIGR02617 176 IEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK 255 (467)
T ss_pred HhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc
Confidence 98642 4555555555556666666677889999999999999999998762 11 11 1 00000 0011
Q ss_pred CCcc--hhhhhhhccCCcccccc-cccHH----HHHHhcCCCCcc-cccCCCC-CHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 242 VTPD--LTTLGKIIGGGLPVGAY-GGRRD----IMEMVAPAGPMY-QAGTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 242 ~~~d--~~~~sK~~~~G~~~g~~-~~~~~----~~~~~~~~~~~~-~~~t~~~-~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
..| .+|+||.+++ |+|.+ +++++ +.+..+.....+ .+.|+++ +.--+.+....|+...+++.+.+--+
T Consensus 256 -~aDsvt~slsKglgA--pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~ 332 (467)
T TIGR02617 256 -YADMLAMSAKKDAMV--PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIN 332 (467)
T ss_pred -cCCEEEEEcCCCCCC--cccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 123 3478898876 78766 55544 334433211111 1224433 22222222223443333555555556
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccC------CC--
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPS------QF-- 383 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~------~~-- 383 (411)
..+++.++|++. +++... ..|.-+.++-..- .+.+. ...=-+..++-.|. +-||-..-- ..
T Consensus 333 qv~yl~~~L~~~----Gvpi~~-~Gghav~iDa~~~-lphip----~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~ 402 (467)
T TIGR02617 333 QVQYLVNGLEEI----GVVCQQ-AGGHAAFVDAGKL-LPHIP----ADQFPAHALACELYKVAGIRAVEIGSLLLGRDPK 402 (467)
T ss_pred HHHHHHHHHHhC----CCcEEe-cCccEEEEehhhh-CCCCC----hhhCcHHHHHHHHHHHcCcceEeecceecccCCC
Confidence 667777777765 555544 5566777765431 01111 11111345555554 446643111 10
Q ss_pred ---------cceee--e-cCCCHHHHHHHHHHHHHHHH
Q 015230 384 ---------EAGFT--S-LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 384 ---------~~~~~--~-~~~t~~~i~~~i~~l~~~~~ 409 (411)
..+|+ | -.-|.+++|...+++..+.+
T Consensus 403 ~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 403 TGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_pred CCccCCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 11454 3 45588999999999988765
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-10 Score=103.73 Aligned_cols=306 Identities=16% Similarity=0.126 Sum_probs=159.4
Q ss_pred CCcHHHHHHHHHHHHcCCC--------CCCC---CHHHHHHHHHHHhhCCCCC----EE-EEeCChHHHHHHHHHHHHhc
Q 015230 52 HADDQVLAALGETMKKGTS--------FGAP---CLLENVLAEMVISAVPSIE----MV-RFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~--------~~~~---~~~~~~l~~~l~~~~~~~~----~v-~~~~~g~~a~~~al~~~~~~ 115 (411)
...|.+++++...+.+-.. |++. ++.+....++..+.++ .+ .+ +-..||+.|+.+++.. ..
T Consensus 31 ~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~-~~~~~w~anvqp~SGs~An~av~~a--Ll 107 (399)
T PF00464_consen 31 YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG-AEPKEWYANVQPHSGSQANLAVYMA--LL 107 (399)
T ss_dssp ---HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT--STTTEEEE---SSHHHHHHHHHHH--HT
T ss_pred ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC-CCcccceEEeecCCchHHHHHHHHH--HH
Confidence 3678888888777776211 1111 3444455555556664 33 33 3445899999888874 33
Q ss_pred cCCcEEEEEeCCcCCCchhhhhh-------cCCCCcccC--CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 116 TGRERIIKFEGCYHGHADPFLVK-------AGSGVATLG--LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~-------~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.++++|+.++...-|+..-.... .+......+ +....+.. |.+++++.++++ ++++
T Consensus 108 ~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~I-------------D~d~l~~~a~~~--kPkl 172 (399)
T PF00464_consen 108 KPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLI-------------DYDELEKLAKEH--KPKL 172 (399)
T ss_dssp -TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB--------------HHHHHHHHHHH----SE
T ss_pred hhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeE-------------CHHHHHHHHhhc--CCCE
Confidence 56788999887765543211110 111111111 11111111 899999999875 7888
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCcc-ccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLP-VGA 261 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~-~g~ 261 (411)
|++-... +.-+.+ +++++++|++.|++|++|-+|. |+ -.|. +. +.+.. .|++ |.-|+|.| | -|.
T Consensus 173 Ii~G~S~-----y~~~~d-~~~~reIad~vga~l~~D~sH~~GLIa~g~-~~-~P~~~-ADvvt~sThKtl~G--Prggi 241 (399)
T PF00464_consen 173 IICGASS-----YPRPID-FKRFREIADEVGAYLMADISHIAGLIAGGL-FP-NPFPY-ADVVTGSTHKTLRG--PRGGI 241 (399)
T ss_dssp EEEE-SS-----TSS----HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS-S---GCCT-SSEEEEESSGGG-S--SS-EE
T ss_pred EEECchh-----ccCccC-HHHHHHHHHhcCcEEEecccccccceehhe-ec-Ccccc-ceEEEeeccccccc--cCceE
Confidence 8886533 111222 8999999999999999999995 77 4442 21 11222 4666 45699986 5 455
Q ss_pred cccc--------------HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHH
Q 015230 262 YGGR--------------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 262 ~~~~--------------~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+..+ +++.+.+.. ..+.+.+-+...-..++...++..... ++..+++.++++.+.+.|.+.
T Consensus 242 I~~~~~~~~~~~~~~~~~~~l~~~I~~--avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~ 319 (399)
T PF00464_consen 242 ILTNKGSKNVDKKGKEIDEELAEKIDS--AVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER 319 (399)
T ss_dssp EEES-SEEEE-TTS-EEEHHHHHHHHH--HHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCccccCCcccccHHHHHHHhcc--ccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5667 677777763 111111111122222332233333222 567788889999999999887
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C-----Ccceeee------
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFTS------ 389 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~~------ 389 (411)
..+. ... .-...++++++.+. ..+..+..+.|.+.||.+... . ...+|+.
T Consensus 320 G~~v--~~g-gTd~H~vlvd~~~~------------~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~ 384 (399)
T PF00464_consen 320 GFKV--VTG-GTDNHQVLVDLRSF------------GIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTR 384 (399)
T ss_dssp T-EE--GGG-S-SSSEEEEEGGGG------------TS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHH
T ss_pred CcEE--EEC-CCCCCeEEEEeccc------------ccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHh
Confidence 3221 110 11355788887532 123467778888999999542 1 1236772
Q ss_pred cCCCHHHHHHHHHH
Q 015230 390 LAHSSDDIQHTITA 403 (411)
Q Consensus 390 ~~~t~~~i~~~i~~ 403 (411)
....+++++++-+.
T Consensus 385 rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 385 RGMKEEDMKEIAEL 398 (399)
T ss_dssp TT--HHHHHHHHHH
T ss_pred CCCCHHHHHHHHhh
Confidence 45567777766554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-10 Score=104.45 Aligned_cols=174 Identities=22% Similarity=0.187 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHhhCCCC--------CEEEEeCChHHHHHHHHHHHHhcc-----------CCcEEEEEeCCcCCCchhh
Q 015230 75 CLLENVLAEMVISAVPSI--------EMVRFVNSGTEACMGVLRLARAFT-----------GRERIIKFEGCYHGHADPF 135 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~--------~~v~~~~~g~~a~~~al~~~~~~~-----------~~~~vi~~~~~~~~~~~~~ 135 (411)
.+.+.++.+|+++.++-+ ..-++|+|||+++..++..+|... .+..+++....-|....-+
T Consensus 78 ~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Ka 157 (373)
T PF00282_consen 78 TEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKA 157 (373)
T ss_dssp HHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHH
T ss_pred ccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHh
Confidence 677889999999999722 367999999999999998776431 1345666666677777777
Q ss_pred hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 136 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 136 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
....|-+++.++....... |+++|++.+++. +..+.+|+.+-....+|.+-+ +++|+++
T Consensus 158 a~~lGlg~~~I~~~~~~~m--------------d~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i 219 (373)
T PF00282_consen 158 ARILGLGVRKIPTDEDGRM--------------DIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADI 219 (373)
T ss_dssp HHHTTSEEEEE-BBTTSSB---------------HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHH
T ss_pred cceeeeEEEEecCCcchhh--------------hHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhh
Confidence 7777877666555432222 899999988753 123446777777777899988 9999999
Q ss_pred HHHhCCEEEEecccccc-ccccCccccccCCC-cchh--hhhhhccCCcccccccccH
Q 015230 213 TKENGALLIFDEVMTGF-RLAYGGAQEYFGVT-PDLT--TLGKIIGGGLPVGAYGGRR 266 (411)
Q Consensus 213 ~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~-~d~~--~~sK~~~~G~~~g~~~~~~ 266 (411)
|++|++++++|.++.|. ...+..-.-..++. .|-+ ..-|+++..++.|++..+.
T Consensus 220 ~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~ 277 (373)
T PF00282_consen 220 CEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRD 277 (373)
T ss_dssp HHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESS
T ss_pred ccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeec
Confidence 99999999999999873 22111111111222 3333 4679998767788886643
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-09 Score=110.58 Aligned_cols=310 Identities=11% Similarity=0.139 Sum_probs=176.2
Q ss_pred EEeccCCccccccCC-CcHHHHHHHHHHHHcCCCCC-CC-------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 38 YIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFG-AP-------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~~~-~~-------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
+.+|++. .+++| .++.+.+++.+...-.+.|+ |. -+...++...++++.+ ..+++.++.++|.+.++
T Consensus 104 ~~~fiG~---G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea 180 (993)
T PLN02414 104 FKSYIGM---GYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEA 180 (993)
T ss_pred cccccCC---CCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHH
Confidence 5566655 77777 66767688887765433332 22 2234566677777887 78899999999999998
Q ss_pred HHHHHHhcc--CCcEEEEEeCCcCCCchhhhhh-cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 108 VLRLARAFT--GRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 108 al~~~~~~~--~~~~vi~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++... ... ++++|++.+..|+......... .+. +..+..++..+.+ ...+.+
T Consensus 181 ~~~a~-~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~-----------------GieV~~v~~~~~~-------~~~~~v 235 (993)
T PLN02414 181 MAMCN-NILKGKKKKFLIASNCHPQTIDVCQTRADGL-----------------GLEVVVADEKDFD-------YSSGDV 235 (993)
T ss_pred HHHHH-hcccCCCCEEEEcCccCHhHHHHHHHhhhhc-----------------CCEEEEecchhhc-------cccCce
Confidence 77543 333 3467888777776543332211 111 1233334322211 112245
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-ccccccCccccccCCCcchh--hhhhhc---c-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKII---G-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~~~~d~~--~~sK~~---~-~G~ 257 (411)
..++ ....+..|.+.+ +++|.++|+++|+++++ .++. ++ +..-....+| .|++ +..|+. + ||-
T Consensus 236 ~~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~lal--~~l~~pge~G--ADi~vgsgqKwg~P~G~GGP 305 (993)
T PLN02414 236 CGVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVM-ATDLLAL--TMLKPPGEWG--ADIVVGSAQRFGVPMGYGGP 305 (993)
T ss_pred EEEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECHHHh--cCCCCHhhcc--CcEEEECCCccccCCCCCCC
Confidence 4444 344456888888 99999999999999999 5553 11 1110112223 3543 444554 2 343
Q ss_pred ccccccccHHHHHHhcC----------CCCccc-------c----cCCCCCH---HHHHHHHHHH--HHHhc---CChHH
Q 015230 258 PVGAYGGRRDIMEMVAP----------AGPMYQ-------A----GTLSGNP---LAMTAGIHTL--KRLKE---PGTYE 308 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~----------~~~~~~-------~----~t~~~~~---~~~a~~~~~l--~~~~~---~~~~~ 308 (411)
..|+++++++....+.. ..+.+. . -..+.|. .++.++.++. ..+.. +++.+
T Consensus 306 ~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ 385 (993)
T PLN02414 306 HAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQ 385 (993)
T ss_pred CeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 48899998887654431 000000 0 0112222 1222333222 12222 45667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 388 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~ 388 (411)
++.++..+++++|++.. +..... ..-..+.|.+ + ...++.+.|.++||.+.....+.+++
T Consensus 386 ri~~la~~l~~~L~~~G--~~~~~~--~~f~~vt~~~-------------~---~~~~v~~~L~~~gI~l~~~~~~~lrv 445 (993)
T PLN02414 386 RVHGLAGVFAAGLKKLG--FQVQSL--PFFDTVKVKC-------------S---DADAIADAAAKVGINLRVVDANTVTV 445 (993)
T ss_pred HHHHHHHHHHHHHhhcC--CccCCC--CCcCeEEEec-------------C---CHHHHHHHHHHCCCeeEEecCCeEEE
Confidence 78888888888886642 111111 1111222322 1 12678999999999887665555655
Q ss_pred --ecCCCHHHHHHHHHHHH
Q 015230 389 --SLAHSSDDIQHTITAAE 405 (411)
Q Consensus 389 --~~~~t~~~i~~~i~~l~ 405 (411)
....|++|||++++.|.
T Consensus 446 s~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 446 SFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred EeeccCCHHHHHHHHHHHc
Confidence 57889999999999996
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-09 Score=104.29 Aligned_cols=311 Identities=11% Similarity=0.012 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh-hhhhcCCCCcccC-CCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLG-LPDSP 152 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~g~~~~~~~-~~~~~ 152 (411)
+....+..+..++.++.....+++||.|.++.+++.. .+.+++. |.++...|-+... ++.++|..+.++. .-...
T Consensus 173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a--~~~~Gd~-VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~ 249 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNA--LLTPGDL-VLFDRNNHKSNHHGALIQAGATPVYLETARNPF 249 (720)
T ss_pred ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHH--hcCCCCE-EEeecccHHHHHHHHHHHcCCeEEEeecccccc
Confidence 4444555556666675445666777778888777763 3334444 5556666655554 5778887555543 22122
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcC-CC-------cEEEEEEcccCCCCCccCCCHHHHHHHHHH-HHHhCCEEEEe
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENN-KG-------EIAAIILEPVVGNSGFIAPKPDFLNAIRRI-TKENGALLIFD 223 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~-------~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l-~~~~~~~li~D 223 (411)
|++... +...+ +.+.++++++++ ++ -..+|+.+|.+ .|...+ +++|.++ |++++ +|++|
T Consensus 250 Gi~g~I--~~~~~---~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~llvD 317 (720)
T PRK13578 250 GFIGGI--DAHCF---DEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-YILFD 317 (720)
T ss_pred CCcCCC--ChHHc---cHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-cEEEe
Confidence 322110 00001 467789999876 33 24456666655 688888 9999998 68888 99999
Q ss_pred cccccc-ccccC---ccccccCCCcc----hh--hhhhhccCCcc-cccccccH-------------HHHHHhcCCCCcc
Q 015230 224 EVMTGF-RLAYG---GAQEYFGVTPD----LT--TLGKIIGGGLP-VGAYGGRR-------------DIMEMVAPAGPMY 279 (411)
Q Consensus 224 e~~~g~-~~g~~---~~~~~~~~~~d----~~--~~sK~~~~G~~-~g~~~~~~-------------~~~~~~~~~~~~~ 279 (411)
|+|.+. ...+. +........+| ++ |.-|.+++ +. .+++-.+. ++.+.+.
T Consensus 318 EAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~al~------ 390 (720)
T PRK13578 318 SAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNNAFM------ 390 (720)
T ss_pred CcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHHHHH------
Confidence 999754 33322 11111223445 44 55687763 22 34443322 2222222
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce--EE--------------------
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI--CG-------------------- 334 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-------------------- 334 (411)
...|.+++-+-+|..-.+...++. +++.++..+....+++.+.+....+.... .+
T Consensus 391 m~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w 470 (720)
T PRK13578 391 LHASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFF 470 (720)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhccccccc
Confidence 122333333333333333333332 56777788888888888733211111000 00
Q ss_pred --------eeecc----eEEEEEecCCCCCcchh-----cccchHHHHHHHHHHHHcCeEeccCCCccee--eecCCCHH
Q 015230 335 --------GYISG----MFGFFFTEGPVYNFEDA-----KKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSD 395 (411)
Q Consensus 335 --------~~~g~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~~~~~t~~ 395 (411)
++... ...++..+..+..-+.. ....+.-+..+.+.|+++||.+.-...+.+- ++...|++
T Consensus 471 ~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~ 550 (720)
T PRK13578 471 SFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMA 550 (720)
T ss_pred ccccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHH
Confidence 00000 11111111000000000 0001122578999998999999887765543 36788999
Q ss_pred HHHHHHHHHHHH
Q 015230 396 DIQHTITAAEKV 407 (411)
Q Consensus 396 ~i~~~i~~l~~~ 407 (411)
++++++++|.++
T Consensus 551 ~~~~Lv~aL~~f 562 (720)
T PRK13578 551 KLQQLVAMLARF 562 (720)
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-08 Score=101.07 Aligned_cols=308 Identities=8% Similarity=-0.026 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC-CCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPG 153 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 153 (411)
+....+..+..++.++.....+++||.|.++.+++.. ..++++.|.++...|-+...++.++|..+.++. .-...|
T Consensus 194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a---~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~G 270 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMY---AAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALG 270 (713)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH---hcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccC
Confidence 4444555555566674444556677778888777763 334444555666667667777888887655543 221222
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCc---EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEE-EEecccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGE---IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL-IFDEVMTGF 229 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~---~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~l-i~De~~~g~ 229 (411)
++.. +.. ..-+.+.+++.++++++. .++|+.+|.+ .|.+.+ +++|.++| |+.+ ++||+|.+.
T Consensus 271 i~g~----I~~-~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEAhgah 336 (713)
T PRK15399 271 ILGG----IPR-REFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSAWVPY 336 (713)
T ss_pred CcCC----CCh-hhccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEeccchhh
Confidence 2210 000 001469999999987653 4677777744 688888 88999988 6776 599999754
Q ss_pred -cccc----CccccccCCCcchh-----hhhhhccCCcc-ccccccc-----HHHHHHhcCCCCcccccCCCCCHHHHHH
Q 015230 230 -RLAY----GGAQEYFGVTPDLT-----TLGKIIGGGLP-VGAYGGR-----RDIMEMVAPAGPMYQAGTLSGNPLAMTA 293 (411)
Q Consensus 230 -~~g~----~~~~~~~~~~~d~~-----~~sK~~~~G~~-~g~~~~~-----~~~~~~~~~~~~~~~~~t~~~~~~~~a~ 293 (411)
...+ ..++. .+-.+|.+ |.-|.+++ +. .+++..+ +++.+.+. ...|.+++-+-+|.
T Consensus 337 ~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~~------m~~STSPsY~LmAS 408 (713)
T PRK15399 337 THFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAFM------MHTSTSPSYPIVAS 408 (713)
T ss_pred hhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHHH------HHcCCCcHHHHHHH
Confidence 3322 22222 11134554 66687764 22 3344222 22333332 22244444444444
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCc-eEEee------ecc------------------eEEEEE
Q 015230 294 GIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGY------ISG------------------MFGFFF 345 (411)
Q Consensus 294 ~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~------~g~------------------~~~~~~ 345 (411)
.-.+...++. +++.++..+....+++.+.++......+ ..+-+ ... .+.++.
T Consensus 409 LD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP 488 (713)
T PRK15399 409 VETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDP 488 (713)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCC
Confidence 4444444442 5677888888888998887763211000 00000 000 001111
Q ss_pred ecCCCCC--cc--hhcccchHHHHHHHHHHHHcCeEeccCCCccee--eecCCCHHHHHHHHHHHHHH
Q 015230 346 TEGPVYN--FE--DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 346 ~~~~~~~--~~--~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~~~~~t~~~i~~~i~~l~~~ 407 (411)
.+..+.. +. -.....+..+..+.+.|.++||.+.-...+.+- ++...|+++++++++.|.+.
T Consensus 489 ~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f 556 (713)
T PRK15399 489 VKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEF 556 (713)
T ss_pred ceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 0000000 00 000012345678899999999999887765543 36788999999999988765
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-09 Score=103.58 Aligned_cols=309 Identities=8% Similarity=-0.024 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPG 153 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 153 (411)
+....+..+..++.++.....+++||.|.++.+++.. ..++++.|.++...|-+...++.++|..+.++.. -...|
T Consensus 194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a---~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~G 270 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMY---SAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYG 270 (714)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHH---hcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccC
Confidence 4444555555666664444556667777777777763 3344555566777777777788888876555432 22222
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcE---EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~---~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
++.. +. ...-+.+.+++.++++++.. .+|+.+|.+ .|.+.+ +++|.++|+.++ +++||+|.+.
T Consensus 271 i~g~----I~-~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAwgah~ 337 (714)
T PRK15400 271 ILGG----IP-QSEFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAWVPYT 337 (714)
T ss_pred CccC----CC-ccccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccchhhh
Confidence 2211 00 00115899999999876533 477777754 688888 999999999887 6899999754
Q ss_pred ccccC----ccccccCCCc-c--hh--hhhhhccCCcc-cccccc-----cHHHHHHhcCCCCcccccCCCCCHHHHHHH
Q 015230 230 RLAYG----GAQEYFGVTP-D--LT--TLGKIIGGGLP-VGAYGG-----RRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 294 (411)
Q Consensus 230 ~~g~~----~~~~~~~~~~-d--~~--~~sK~~~~G~~-~g~~~~-----~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~ 294 (411)
...+. .++. .+-.+ | ++ |.-|.+++ +. .+++-. .+++.+.+. ...|.+++-+-+|..
T Consensus 338 ~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~------m~~STSPsY~l~ASL 409 (714)
T PRK15400 338 NFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM------MHTTTSPHYGIVAST 409 (714)
T ss_pred ccCcccCCcChhh-cCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH------HHcCCCcHHHHHHHH
Confidence 33222 2222 12211 2 33 56687764 22 233322 123333332 222444444444444
Q ss_pred HHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhc-CCceEEee-e-----------------cc------eEEEEEe
Q 015230 295 IHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGY-I-----------------SG------MFGFFFT 346 (411)
Q Consensus 295 ~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~-----------------g~------~~~~~~~ 346 (411)
-.+...++. +++.++..+....+++.+.++.... ++...+-+ . |+ ++.++..
T Consensus 410 D~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~ 489 (714)
T PRK15400 410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI 489 (714)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCc
Confidence 444444442 5677888888888888887753200 00000000 0 00 0011111
Q ss_pred cCCCC--Ccc--hhcccchHHHHHHHHHHHHcCeEeccCCCccee--eecCCCHHHHHHHHHHHHHH
Q 015230 347 EGPVY--NFE--DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 347 ~~~~~--~~~--~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~~~~~t~~~i~~~i~~l~~~ 407 (411)
+..+. .+. -.....+..+..+.+.|.++||.+.-...+.+- ++...|+++++.+++.|.+.
T Consensus 490 Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 490 KVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred eEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 10000 000 000012234578889999999999887765543 36788999999999988765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-09 Score=108.35 Aligned_cols=306 Identities=12% Similarity=0.078 Sum_probs=167.7
Q ss_pred cccCC-CcHHHHHHHHHHHH---cCCCCC-----CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccC
Q 015230 48 AIIGH-ADDQVLAALGETMK---KGTSFG-----APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 48 ~~~g~-~~~~v~~a~~~~l~---~~~~~~-----~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
.++++ .++-+.+.+.+.-. ...+|+ +.-+...++.+.++++.+ ...++.+..++|.+.++++... ...+
T Consensus 84 G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~-~~~~ 162 (954)
T PRK05367 84 GYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAK-RVSK 162 (954)
T ss_pred CCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhh-hhcc
Confidence 67777 44445465655321 122222 123344566677777887 6778899999999999777543 3333
Q ss_pred --CcEEEEEeCCcCCCchhhhh-hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 118 --RERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 118 --~~~vi~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
+++|++.+..|+........ +...+ .++..++.++ +++ .+++.+++ ....+
T Consensus 163 ~~~~~vlv~~~~hP~~~~v~~t~a~~~G-----------------~ev~~~~~~~--d~~------~~~~~~vl-vq~p~ 216 (954)
T PRK05367 163 SKSNRFFVDDDVHPQTLDVLRTRAEPLG-----------------IEVVVGDAAK--ALD------HDDVFGVL-LQYPG 216 (954)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhCC-----------------CEEEEecCcc--CCC------cccEEEEE-EecCC
Confidence 37788877777654332211 11121 1223332221 111 13455543 34456
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhc---cCCcc-cccccccHHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKII---GGGLP-VGAYGGRRDIME 270 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~---~~G~~-~g~~~~~~~~~~ 270 (411)
..|.+.+ +++|.++|+++|+++++|-.+..+.... ....+|.+.-+.+..|+. +.|-| .|++++++++..
T Consensus 217 ~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l~--~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r 290 (954)
T PRK05367 217 TSGEVRD----YTALIAAAHARGALVAVAADLLALTLLT--PPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKR 290 (954)
T ss_pred CCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCCC--ChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHh
Confidence 6888888 9999999999999999998663110001 112233322233455652 21224 888888888877
Q ss_pred HhcCCCCc-----------------------ccccCCCCC-HHHHHHHHHH--HHHHhc---CChHHHHHHHHHHHHHHH
Q 015230 271 MVAPAGPM-----------------------YQAGTLSGN-PLAMTAGIHT--LKRLKE---PGTYEYLNKITGELTQGI 321 (411)
Q Consensus 271 ~~~~~~~~-----------------------~~~~t~~~~-~~~~a~~~~~--l~~~~~---~~~~~~~~~~~~~~~~~l 321 (411)
.+...... +...|.+.+ ..+..+..++ +..+.. +++.+++..+..+++++|
T Consensus 291 ~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L 370 (954)
T PRK05367 291 SMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGL 370 (954)
T ss_pred hCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 76421000 000111111 1111112222 232332 566677888888888888
Q ss_pred HHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHH
Q 015230 322 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQH 399 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~ 399 (411)
++... .... ......+.+.+ + .+..++.+.|.++||.+.......+++ ....|++||++
T Consensus 371 ~~~G~--~~~~--~~~f~~~~~~~-------------~--~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~ 431 (954)
T PRK05367 371 RALGL--EVVH--DSFFDTLTVEV-------------G--GDAAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAA 431 (954)
T ss_pred HhcCc--ccCC--CCCCCeEEEeC-------------C--CCHHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHH
Confidence 66321 1110 01011222222 1 124789999999999996654445665 57789999999
Q ss_pred HHHHHH
Q 015230 400 TITAAE 405 (411)
Q Consensus 400 ~i~~l~ 405 (411)
+++.|.
T Consensus 432 l~~~l~ 437 (954)
T PRK05367 432 LLAVFG 437 (954)
T ss_pred HHHHHc
Confidence 999996
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.7e-09 Score=88.39 Aligned_cols=331 Identities=14% Similarity=0.063 Sum_probs=200.5
Q ss_pred cccCCCcHHHHHHHHHHHHcCC------CCCC---CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-c
Q 015230 48 AIIGHADDQVLAALGETMKKGT------SFGA---PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-T 116 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~------~~~~---~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-~ 116 (411)
+++|+.+...++.+.+.++.+. ++.+ +..-.+.+...+....+ ..+.|.+.|+-+--+...+....+- .
T Consensus 74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTe 153 (465)
T KOG3846|consen 74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTE 153 (465)
T ss_pred cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcc
Confidence 7899999999999999988831 1111 12223455555666666 5667778887776665555322121 2
Q ss_pred CCcEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 117 GRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
++-+|+....+|+....+... +-|..+.- .+. -+.+..+.+. + ..+++-+.|+++.+.++.|++..++
T Consensus 154 kR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~---sm~-~iePREGEet--l---RteDILd~IEkngDeiA~v~fSGvq 224 (465)
T KOG3846|consen 154 KRFKILLEKKAFPSDHYAIESQCKLHGISPEN---SMI-QIEPREGEET--L---RTEDILDTIEKNGDEIALVCFSGVQ 224 (465)
T ss_pred hhhhhhhccCCCCchHHHHHhhhhhcCCChHH---heE-Eecccccccc--h---hHHHHHHHHHhcCCeEEEEEeecce
Confidence 456788888888877665532 22221110 000 0000001111 1 4677888899888999999999999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCC-cccccccccHHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEM 271 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~ 271 (411)
--+|...+ +.+|-..-+..|+++=.|-+|+ .| ...-...||++....|.-|.+++| --+|.+...++..+.
T Consensus 225 yYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA---vgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~ 297 (465)
T KOG3846|consen 225 YYTGQYFD----IGAITFAGQFKGCLVGFDLAHA---VGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKE 297 (465)
T ss_pred eecccccc----hhhhhhcccCCCcEechhhhhh---hcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcc
Confidence 99999988 8888876777799999999997 33 233344566655555677888744 236666554433222
Q ss_pred hcCCCCccccc---------------------C-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc-
Q 015230 272 VAPAGPMYQAG---------------------T-LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA- 328 (411)
Q Consensus 272 ~~~~~~~~~~~---------------------t-~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 328 (411)
..+....+.++ . .+++.+...+.+..++...+-+ .+.++++.-++...|+.+....
T Consensus 298 ~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRkrS~lLTgYleyL~k~~~ 376 (465)
T KOG3846|consen 298 SLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRKRSLLLTGYLEYLLKASK 376 (465)
T ss_pred hhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhhhhhhHHhHHHHHHHHhc
Confidence 22111111111 1 1333444445556666655422 4555555555555554443211
Q ss_pred ----CC-----------ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee---ec
Q 015230 329 ----GH-----------AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT---SL 390 (411)
Q Consensus 329 ----~~-----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~---~~ 390 (411)
+. +.....+|..+.+.+..+. ..+.+.|.++|+++.....+.+|+ ++
T Consensus 377 g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~---------------~~vfqeL~krGv~~DkR~PNvIRvAPvpL 441 (465)
T KOG3846|consen 377 GYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPT---------------PKVFQELHKRGVIGDKRRPNVIRVAPVPL 441 (465)
T ss_pred ccCchhhhcceeEEEeCCcccccccceEEEEeCCCc---------------hHHHHHHHHcCeeccccCCCceEeecchh
Confidence 11 1123345666666664321 578899999999999888888887 68
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+..|+..++..|.+++..
T Consensus 442 YN~f~Dvy~f~n~L~e~~d~ 461 (465)
T KOG3846|consen 442 YNTFSDVYIFVNALNEAMDK 461 (465)
T ss_pred hccHHHHHHHHHHHHHHHHH
Confidence 88999999999999988764
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-08 Score=88.74 Aligned_cols=311 Identities=12% Similarity=0.007 Sum_probs=176.0
Q ss_pred CcHHHHHHHHHHHHcCCC-------CCCC----CHHHHHHHHHHHhhCC--CCCEEE-EeCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGTS-------FGAP----CLLENVLAEMVISAVP--SIEMVR-FVNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-------~~~~----~~~~~~l~~~l~~~~~--~~~~v~-~~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+++|++++.+.+-+... .+.. .+...+..+.|.+.++ ...+|+ +..||+.+.++++.-. ..++
T Consensus 15 lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl--l~~g 92 (364)
T PRK12462 15 LPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF--SRPG 92 (364)
T ss_pred CCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc--CCCC
Confidence 688899999888877322 1111 4445666677777775 223554 5556999999888742 2344
Q ss_pred cEEE-EEeCCcCCCchhhhh-hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCC
Q 015230 119 ERII-KFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 119 ~~vi-~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~ 196 (411)
++++ +...++.+....-.+ ..| .+..+......++ -.++ +++++ +.. .+...|.+.++...+
T Consensus 93 ~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~--------~~~p--~~~~~----~~~-~d~~~v~~t~NETst 156 (364)
T PRK12462 93 AAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGY--------RTLP--SLAEL----DWD-ARAPFRHYVSNETVE 156 (364)
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCC--------CcCC--CHHHh----ccC-CCCcEEEEccCCCCc
Confidence 4454 455555443322222 223 2222211000000 0000 44443 221 246678888888888
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCC
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 275 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~ 275 (411)
|+..+ ++.+.+++++|+|-+-+ + .+..+.++.| +.-+.+..|.++ +| ++.++.++++++.....
T Consensus 157 Gv~~~---------~~~~~~~~llvvD~sS~-~-~s~pid~~~~--dvi~agsQKnlgP~G--ltvvivs~~al~~~~~~ 221 (364)
T PRK12462 157 GLQFP---------DAAGLPDSPLIADMSSD-F-MSRPFDVEAY--GMVYAHAQKNLGPAG--VTVAIIRRALLERVPDT 221 (364)
T ss_pred eEecC---------cccccCCCeEEEEcCch-h-hCCCCChHHc--cEEEeeccccCCCCc--eEEEEECHHHHhhcccc
Confidence 88875 23334799999998775 1 2233344444 112346789998 23 55678899888776532
Q ss_pred CCcc--------cccC-CCCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-e
Q 015230 276 GPMY--------QAGT-LSGNPLAMTAGIHTLKRLKEP-----GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-M 340 (411)
Q Consensus 276 ~~~~--------~~~t-~~~~~~~~a~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~ 340 (411)
.+.+ ..++ ++++.....+...+++.+.++ ++.++.+++++.+++.+++...-+........+.. -
T Consensus 222 ~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mn 301 (364)
T PRK12462 222 LPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMN 301 (364)
T ss_pred CCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcce
Confidence 2222 1123 366677777888888877544 45556666666666666665211112122222233 2
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHHHH
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~~~ 409 (411)
+.|.+ .+....+++.+.+.++|+.-..|. -..+|.+ -.++.+.++++++-+++.-+
T Consensus 302 v~f~~-------------~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 302 VAFRF-------------RQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred EEEEc-------------CCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 33333 233445789999999999886653 1236664 46689999999998887654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-07 Score=90.54 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhcc-------C-C--------------------------
Q 015230 74 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT-------G-R-------------------------- 118 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~-------~-~-------------------------- 118 (411)
.+..++++.+|+++.++ +...-.||+|||+|+..+|.+||... . .
T Consensus 121 ~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~ 200 (608)
T TIGR03811 121 TSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLES 200 (608)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccc
Confidence 47788999999999997 44456799999999999998887531 0 0
Q ss_pred ---------------------cEEEEEeCCcCCCchhhhhhcCCC---CcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 119 ---------------------ERIIKFEGCYHGHADPFLVKAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 119 ---------------------~~vi~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
..+++.+..-|.+..-++...|-+ ++.++....... |+++|+
T Consensus 201 ~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rm--------------d~~~L~ 266 (608)
T TIGR03811 201 AGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRM--------------DINELE 266 (608)
T ss_pred cccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcC--------------CHHHHH
Confidence 003444445455555555555543 334333222222 899999
Q ss_pred HHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH---HHhCC--EEEEecccccc
Q 015230 175 NLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT---KENGA--LLIFDEVMTGF 229 (411)
Q Consensus 175 ~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~---~~~~~--~li~De~~~g~ 229 (411)
+.+++ ....+.+|+..-...+.|.+-| +++|.++| +++|+ ++++|.+|.|+
T Consensus 267 ~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~ 325 (608)
T TIGR03811 267 KIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGY 325 (608)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccch
Confidence 98874 2223556777777777898888 99999998 67898 69999999875
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-08 Score=92.24 Aligned_cols=298 Identities=17% Similarity=0.243 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEE-eCChHHHHHHHHHHHHhc-----cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 148 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~-~~~g~~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~ 148 (411)
.+...+|.++|.++. +.|.+.| -|||.++-.+.|+..|.| .+...|...+-+.||.-.+.+++.|-.+..+.+
T Consensus 581 ~~lf~~Le~~Lc~iT-G~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~ 659 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEIT-GFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGC 659 (1001)
T ss_pred HHHHHHHHHHhheee-cccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeec
Confidence 455566777777666 6676655 457888777777665555 235678888889999888888888876665444
Q ss_pred CCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccc--
Q 015230 149 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-- 226 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~-- 226 (411)
.....+ |+.+|++..+++.++.+++++.-. +..|++.+. ++++.++.++||.-|+.|.+.
T Consensus 660 ~~~G~i--------------d~~dLk~kaekh~~~Laa~MvTYP-ST~GvfE~~---i~d~cd~iHehGGQVYlDGANMN 721 (1001)
T KOG2040|consen 660 DANGNI--------------DMVDLKAKAEKHKDNLAALMVTYP-STHGVFEEG---IDDICDIIHEHGGQVYLDGANMN 721 (1001)
T ss_pred cCCCCc--------------cHHHHHHHHHHhhhhhheeEEecc-ccccccccc---HHHHHHHHHhcCCEEEecCCCcc
Confidence 333333 899999999998888888887532 335666543 999999999999999999876
Q ss_pred --ccc-ccccCccccccCCCcchh--hhhhhc----cCCcc-cccccccHHHHHHhcCCCCccc---------ccCCCC-
Q 015230 227 --TGF-RLAYGGAQEYFGVTPDLT--TLGKII----GGGLP-VGAYGGRRDIMEMVAPAGPMYQ---------AGTLSG- 286 (411)
Q Consensus 227 --~g~-~~g~~~~~~~~~~~~d~~--~~sK~~----~~G~~-~g~~~~~~~~~~~~~~~~~~~~---------~~t~~~- 286 (411)
.|+ ++|..++ |+. -+-|.| |||-| +|-+.+.+.+...+.. .+... .++.+.
T Consensus 722 AqVGlc~pGd~Ga--------DV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~-HpVvs~~~~~~~~~~gsVsaa 792 (1001)
T KOG2040|consen 722 AQVGLCRPGDIGA--------DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSPGRPEDTSPVGSVSAA 792 (1001)
T ss_pred ceecccCCccccc--------cceeecccceeeecCCCCCCCCCccchhhhccccCCC-CCccCCCCCCCCCCccceecc
Confidence 366 6664332 222 245655 34444 6777677766665542 11110 011111
Q ss_pred ---CHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccc
Q 015230 287 ---NPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360 (411)
Q Consensus 287 ---~~~~~a~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (411)
+...+....+.++.+... +.-+-..-+++|+.++|+.. |++.. ++...++.-++.- +.++ .+...
T Consensus 793 P~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h---Ykil~--~~~~~~vaHEFIl-D~r~---fK~~a 863 (1001)
T KOG2040|consen 793 PWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH---YKILF--RGENGLVAHEFIL-DLRP---FKKTA 863 (1001)
T ss_pred CCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc---cceeE--ecCCcceeeeeee-echh---hcccc
Confidence 222333445667766553 33344566788888888775 44332 2222355555421 1122 12233
Q ss_pred hHHHHHHHHHHHHcCeEeccCCCcc---eee--ecCCCHHHHHHHHHHHHHHHH
Q 015230 361 TTKFARFYRGMLEEGVYFAPSQFEA---GFT--SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 361 ~~~~~~~~~~l~~~Gi~v~~~~~~~---~~~--~~~~t~~~i~~~i~~l~~~~~ 409 (411)
..++..+++.|.+.|+....-.++. +-+ .-.-+.+++|++++++..+-.
T Consensus 864 gieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIre 917 (1001)
T KOG2040|consen 864 GIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIRE 917 (1001)
T ss_pred CCcHHHHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHH
Confidence 4556789999999999876654332 333 234577999999999876543
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-07 Score=88.69 Aligned_cols=300 Identities=11% Similarity=0.027 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCccc-CCCCC-C
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-GLPDS-P 152 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~-~ 152 (411)
.....+..+..++.++.....+.+||.|.|+..++. ...++++.|.++...|-+....+.++|..+.++ +.... -
T Consensus 69 ~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~---a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~ 145 (557)
T COG1982 69 EGPIKEAQELAARVFGADHTYFVVNGTSTANKAVIN---AVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLY 145 (557)
T ss_pred CccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHH---hhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccc
Confidence 344455555555666434456677777777777776 334444555556666666666677777754443 22211 2
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCc-EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-ccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR 230 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~~ 230 (411)
+++... +.+.+++.+.+++.. ..+++.+|.+ .|+... +++|.++++++++++.+||+|. -+.
T Consensus 146 gi~ggI----------~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~~ 209 (557)
T COG1982 146 GIIGGI----------PLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHFD 209 (557)
T ss_pred cccCCC----------CHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCccccc
Confidence 222111 789999888887766 7788888866 688888 9999999999999999999994 111
Q ss_pred cccCccccccCCCcchh--hhhhhccCCccccccccc-------HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH
Q 015230 231 LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301 (411)
Q Consensus 231 ~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~-------~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~ 301 (411)
....+.-.......|++ |.-|.+++.--.+.+..+ +++.+.+. ++. +.+++-..+|..-. .+..
T Consensus 210 ~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~-----~h~-STSPsY~l~ASlD~-Ar~~ 282 (557)
T COG1982 210 FSPMLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALM-----MHQ-STSPSYPLMASLDV-ARMQ 282 (557)
T ss_pred ccccCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHH-----HHc-cCCchHHHHHHHHH-HHHh
Confidence 11111111111223455 455666542224455333 34444443 122 33333333333322 3333
Q ss_pred hc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee------c---------ceEEEEEecCCCCCcchhcccchHH
Q 015230 302 KE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI------S---------GMFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 302 ~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------g---------~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
.. .++.+..-+..-.+++.+++.....++....... + ..+.+|-.+..+.. ...+..
T Consensus 283 ~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~t-----p~~Gip 357 (557)
T COG1982 283 EGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITT-----PEFGIP 357 (557)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEec-----CCCCCc
Confidence 22 3443333344444444444333333311110000 0 12222221111100 024456
Q ss_pred HHHHHHHHHHcCeEeccCCCcceee---ec-CCCHHHHHHHHHHHH
Q 015230 364 FARFYRGMLEEGVYFAPSQFEAGFT---SL-AHSSDDIQHTITAAE 405 (411)
Q Consensus 364 ~~~~~~~l~~~Gi~v~~~~~~~~~~---~~-~~t~~~i~~~i~~l~ 405 (411)
+..+.+.|+++|++..-.+...+.+ +. .....+++.+++.++
T Consensus 358 g~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 358 GAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred HHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence 6889999999999988776554432 23 234444555555444
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=86.16 Aligned_cols=239 Identities=16% Similarity=0.213 Sum_probs=141.5
Q ss_pred EEEeccCCccccccCC--CcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al 109 (411)
.+++.+...-..++|- -+|++++++.+.+......- .......++...-....+ +.+.++.+|.-+.|+..++
T Consensus 21 ~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~ 100 (395)
T COG1921 21 RVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTL 100 (395)
T ss_pred hhhhhhhhheeccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHH
Confidence 3444444222245554 57899999988888742211 112222222221112222 6788889998888988877
Q ss_pred HHHHhccCCcEEEEEe-C---CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 110 RLARAFTGRERIIKFE-G---CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~-~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
- .+..+..+|+.- + ++|......+..+|.+.+..... + .....+++.++.++. ...
T Consensus 101 ~---al~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t---n-------------~t~~~d~~~AIne~t-a~l 160 (395)
T COG1921 101 N---ALAEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT---N-------------RTHLKDYELAINENT-ALL 160 (395)
T ss_pred h---hhccCCeEEEEccccccCCCCChhHHHHHcCCEEEEeccc---C-------------cCCHHHHHHHhccCC-eeE
Confidence 5 333343444421 1 57777777777777654432111 1 115788888888531 222
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhh--hhccCCcccccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAY 262 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~ 262 (411)
+-+.+++.+..+.+. ++++.++|++|++++|+|.+-... +. ..-..+.+...+|++++| |.|+| .+.|.+
T Consensus 161 lkV~s~~~~f~~~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~~-e~~l~~~la~GaDLV~~SgdKllgG-PqaGii 233 (395)
T COG1921 161 LKVHSSNYGFTGMLS-----EEELVEIAHEKGLPVIVDLASGALVDK-EPDLREALALGADLVSFSGDKLLGG-PQAGII 233 (395)
T ss_pred EEEeecccccccccc-----HHHHHHHHHHcCCCEEEecCCcccccc-ccchhHHHhcCCCEEEEecchhcCC-CccceE
Confidence 233334333344443 889999999999999999988533 21 111122234567888877 66664 457888
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCC
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~ 305 (411)
++++++++.+.... ..-.+-......++..++++.+...+
T Consensus 234 ~GkKelI~~lq~~~---l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 234 VGKKELIEKLQSHP---LKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred echHHHHHHHHhhh---hhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 99999999887422 22244556677788888888887743
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-07 Score=83.53 Aligned_cols=334 Identities=15% Similarity=0.131 Sum_probs=180.4
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-----CCCCCCCHHHHHHHHHHHhhCCCCCEE--EEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEMV--RFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~v--~~~~~g~~a~ 105 (411)
.||+.-....++. .+++ +++..+-+.+.+... ..++.......+....++..+.+++.. .-|.||||+.
T Consensus 76 ld~~~~~~~vS~~--v~~~--~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~ 151 (491)
T KOG1383|consen 76 LDGNPRLGLASGV--VYWG--EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESG 151 (491)
T ss_pred cCCCcccCeeeEE--EecC--CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHH
Confidence 3555333434442 5666 555555555555541 134556777888999999998743333 4667899997
Q ss_pred HHHHHHHHhcc----C-CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 106 MGVLRLARAFT----G-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 106 ~~al~~~~~~~----~-~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
.++.+..+-.. + ...-++....-|..+..+...-+-.+..+ +...+ .+.+ |+..+.+.++
T Consensus 152 l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V--~~~~~--------~~~~---D~~k~~~~i~-- 216 (491)
T KOG1383|consen 152 LAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREV--PLDEG--------DYRV---DPGKVVRMID-- 216 (491)
T ss_pred HHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEee--ecccc--------ceEe---cHHHHHHHhc--
Confidence 77776432211 1 11223333333332222211111111111 11111 1111 7888888877
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-hCCEEEEecccccc-ccccCccccccCCC-cchhh---hh-h-h
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF-RLAYGGAQEYFGVT-PDLTT---LG-K-I 252 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-~~~~li~De~~~g~-~~g~~~~~~~~~~~-~d~~~---~s-K-~ 252 (411)
+++.+++.+-.+...|.+-+ +++|.++..+ +++++.+|.+-.|| -+-.......|++. |-+.+ -+ | +
T Consensus 217 -eNti~lv~~~~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYG 291 (491)
T KOG1383|consen 217 -ENTIMLVGSLPNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYG 291 (491)
T ss_pred -cceEEEEEEcCCCCccchhh----HHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceee
Confidence 46788888877777888888 9999999999 99999999999998 54111222234432 32222 22 3 3
Q ss_pred cc-CCcccccc-cccHHHH-HHhcC---C-CC-----cccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHH
Q 015230 253 IG-GGLPVGAY-GGRRDIM-EMVAP---A-GP-----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELT 318 (411)
Q Consensus 253 ~~-~G~~~g~~-~~~~~~~-~~~~~---~-~~-----~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~ 318 (411)
+. .| +||+ ..++++. +++.. . .. .+.++..+.+..+|.++.-.+ -++ .+..+++.+..+.++
T Consensus 292 l~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~l--G~eGY~~~~~~ive~~~~l~ 367 (491)
T KOG1383|consen 292 LAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSL--GEEGYRENTQNIVETARKLR 367 (491)
T ss_pred eeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence 33 22 6777 3444432 22221 0 11 111222233334444443222 222 456677888899999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc---eeeecCCCHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---GFTSLAHSSD 395 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~---~~~~~~~t~~ 395 (411)
+.++++ +.+... +. ..+.|...+.. ..+.-++.+.|.++|-.+..-..+. +++...+..+
T Consensus 368 egie~i----~~i~i~-gk-p~vs~~~~~s~-----------~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~ 430 (491)
T KOG1383|consen 368 EGIENI----KGIKIV-GK-PLVSFILFGSN-----------DVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHARE 430 (491)
T ss_pred Hhhhcc----ccceec-CC-CcEEEEEccCC-----------ccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccH
Confidence 999885 222111 11 33444433221 1223678999999998887654332 4444444444
Q ss_pred H-HHHHHHHHHHHHHhC
Q 015230 396 D-IQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~-i~~~i~~l~~~~~~~ 411 (411)
+ .++++.-|++++.++
T Consensus 431 ~~A~~~v~Di~~~~~el 447 (491)
T KOG1383|consen 431 DVADRFVADIRKVVEEL 447 (491)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4 688888888887653
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-06 Score=75.14 Aligned_cols=322 Identities=14% Similarity=0.164 Sum_probs=172.5
Q ss_pred EEEeccCCccccccCCCcHHHHH-HHHHHHHcCCCCC-CCCH-------HHHHHHHHHHhhCC-CCCEEEEeCChHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLA-ALGETMKKGTSFG-APCL-------LENVLAEMVISAVP-SIEMVRFVNSGTEACM 106 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~-a~~~~l~~~~~~~-~~~~-------~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~ 106 (411)
.+..|++. .++++--|.++. .+.+--.=++.|. |.++ ..-.+...++++.+ +-.+...-.++|.+-|
T Consensus 75 ~~~sfiG~---GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAE 151 (450)
T COG0403 75 VFTSFIGA---GYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAE 151 (450)
T ss_pred hhhhhccC---cccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHH
Confidence 44556655 888884444433 5544322122232 2222 22334444555555 4445555566777777
Q ss_pred HHHHHHHhccC-CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 107 GVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 107 ~al~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
+++.+-+...+ +.++++. ..-|-.+...+... ....+..+...+++|.+++++. + ...+.
T Consensus 152 Am~ma~r~~k~k~~~~~V~-~~vhpqt~~Vl~Tr---------------a~~~g~~i~~~~~~d~~~l~~~-~--~~~~~ 212 (450)
T COG0403 152 AMLMAKRVTKKKRNKFLVP-KDVHPQTLDVLRTR---------------AEGLGIEIEVVDADDLDDLESA-D--DGDVF 212 (450)
T ss_pred HHHHHHHhhcCcCceEEec-CCCCHHHHHHHHhh---------------cccCceEEEEeccchhhhhhhc-c--ccCeE
Confidence 77654433333 4555554 44443433332221 1112335666777788888877 3 24788
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEE--Eecccccc--ccccCccccccCCCcchh-----hhhhhcc-C
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI--FDEVMTGF--RLAYGGAQEYFGVTPDLT-----TLGKIIG-G 255 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li--~De~~~g~--~~g~~~~~~~~~~~~d~~-----~~sK~~~-~ 255 (411)
+++++-++..|....+ +++|.+.++++|.+++ +|=.--++ .+|.+++ ||+ .|+=.++ |
T Consensus 213 gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GA--------DIvvG~~QrfGvPmgfG 280 (450)
T COG0403 213 GVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGLLKPPGEFGA--------DIVVGSAQRFGVPMGFG 280 (450)
T ss_pred EEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhccCCccccCC--------ceEEecCcccCCCcCCC
Confidence 8888876655546656 9999999999998766 44444344 3333322 332 2444555 4
Q ss_pred CcccccccccHHHHHHhcC----------CCC---------------cccccCCCCCHHHHHHHHHHH-HHHhc---CCh
Q 015230 256 GLPVGAYGGRRDIMEMVAP----------AGP---------------MYQAGTLSGNPLAMTAGIHTL-KRLKE---PGT 306 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~----------~~~---------------~~~~~t~~~~~~~~a~~~~~l-~~~~~---~~~ 306 (411)
|--.|++.++++....+.- .++ -...+..+.++.-+|.+.+.. -.+.. .++
T Consensus 281 GPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~i 360 (450)
T COG0403 281 GPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEI 360 (450)
T ss_pred CcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 5447777777766544421 000 001112223333233222222 22222 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcce
Q 015230 307 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 386 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~ 386 (411)
..++.++..++.++|++.. ....+....+|--+.+.- +. ..+..+.++....|+-+.......+
T Consensus 361 A~r~~~~a~~la~~L~~~~----~g~~~~~~~fFdt~~v~~-----------~~-~~~~~l~~~~~~~G~~L~~~~~~~~ 424 (450)
T COG0403 361 AERIHRLAAYLAAGLKEIG----AGVELVFDHFFDTFTVRV-----------PE-EVAEALLAAAIAGGINLRRVDADTV 424 (450)
T ss_pred HHHHHHHHHHHHHHHhhcC----CceEeccccceeeEEEec-----------ch-hHHHHHHHHHHhcCCceeeecCCce
Confidence 6777788888888887652 111111113332332211 21 3456777787888888877655554
Q ss_pred ee--ecCCCHHHHHHHHHHHHHHH
Q 015230 387 FT--SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 387 ~~--~~~~t~~~i~~~i~~l~~~~ 408 (411)
.+ .-.+|+++|+.+++.+....
T Consensus 425 ~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 425 LIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred EEEeecccCHHHHHHHHHHHhhhc
Confidence 44 45678999999999987653
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.4e-09 Score=92.39 Aligned_cols=226 Identities=19% Similarity=0.267 Sum_probs=53.5
Q ss_pred cccCC--CcHHHHHHHHHHHHcCCCCCC------CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 48 AIIGH--ADDQVLAALGETMKKGTSFGA------PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 48 ~~~g~--~~~~v~~a~~~~l~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.++|- .++++.+++.+.+..+...-| .......+.+.++ .+.+.+..+++|+...|+..++. .+..+.
T Consensus 11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~-~ltgAeaA~VvNnnaAAv~L~l~---~la~~~ 86 (367)
T PF03841_consen 11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLC-ELTGAEAALVVNNNAAAVLLALN---TLAKGK 86 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc---cccccc
Confidence 45554 457788888777666322111 1111223333333 33378888898888889988776 333344
Q ss_pred EEEEEeCCc---CC--CchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE-EcccC
Q 015230 120 RIIKFEGCY---HG--HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-LEPVV 193 (411)
Q Consensus 120 ~vi~~~~~~---~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi-~~~~~ 193 (411)
.||+.-+-- .| +....+..+|.....+. ......++++++++. +++++++ +.+.|
T Consensus 87 EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVG----------------ttN~t~~~Dye~AI~---e~Ta~ll~Vh~Sn 147 (367)
T PF03841_consen 87 EVIVSRGELVEIGGSFRIPDVMRQSGARLVEVG----------------TTNRTHLSDYEKAIT---ENTAALLKVHTSN 147 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc----------------ccccccccccccccc---ccccccccccccc
Confidence 444432211 11 11222222332111111 011114677888887 4566654 33333
Q ss_pred C-CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c---cc---cCccccccCCCcchhhhh--hhccCCccccccc
Q 015230 194 G-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R---LA---YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYG 263 (411)
Q Consensus 194 ~-~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~---~g---~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~ 263 (411)
. ..|...... ++++.+++++|++++|+|-.-..+ . .| .....+......|++||| |.++| --.|.++
T Consensus 148 ~~i~GFt~~~~--~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQaGiI~ 224 (367)
T PF03841_consen 148 FRIQGFTGEVS--LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGG-PQAGIIV 224 (367)
T ss_dssp ---------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-EEEE
T ss_pred ccccccccccc--HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCC-CCeEEEE
Confidence 2 233333323 999999999999999999877322 1 11 222333344567899888 66665 2277889
Q ss_pred ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh
Q 015230 264 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 302 (411)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~ 302 (411)
+.+++++.++.. -....+...-...++..++++.+.
T Consensus 225 Gkk~lI~~lk~~---pl~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 225 GKKELIEKLKKH---PLGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp EEHHHHHHHHHH---HHTTT-B--HHHHHHHHHHHHH--
T ss_pred eCHHHHHHHhhC---CCcceEeeCHHHHHHHHHHHHHHH
Confidence 999999998731 123345556677888888887655
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-05 Score=67.92 Aligned_cols=347 Identities=14% Similarity=0.101 Sum_probs=180.0
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.+..++|+++-.| .|-....--.++..-=+ .|. .+.....|++...+.+ +.+.++.|.-|-.|-...+..+.
T Consensus 44 Sedv~IDLLTDSG---Tgams~~qwaamm~GDE---AYa-gsrs~~~L~~avkdif-Gfq~~iPthQGRgAE~Il~~i~i 115 (471)
T COG3033 44 SEDVFIDLLTDSG---TGAMTDKQWAAMMRGDE---AYA-GSRSYYALADAVKDIF-GFQYTIPTHQGRGAENILIPILI 115 (471)
T ss_pred ccceEEEeeccCC---cccccHHHHHHHhccch---hhc-ccccHHHHHHHHHHhc-CceeeeeccCCccHHHHHHHHHh
Confidence 4567899988743 33223333333332211 232 2344567777777777 57888889887766655554433
Q ss_pred h---ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC---CHHHHHHHHHcC-CCcEEE
Q 015230 114 A---FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENN-KGEIAA 186 (411)
Q Consensus 114 ~---~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~~~~~-~~~~~~ 186 (411)
+ ..++.+.+++++.|.-.+.+-....|.-+.-++.+.... ..+..|+. |++.|++.+++- .+++..
T Consensus 116 k~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d-------~~~~~pFKGd~D~~kLe~lidevG~~nvp~ 188 (471)
T COG3033 116 KKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFD-------TEVKYPFKGNFDLEKLERLIDEVGADNVPY 188 (471)
T ss_pred hhccccCCccccccccceecchhHHHHhcCCcccccccccccc-------ccccCCCCCccCHHHHHHHHHHhCcccCcE
Confidence 3 223455666666666555555555554333222221111 11111111 899999999974 345666
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc----cc-ccccCccccccCC---C------cchhhhh--
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT----GF-RLAYGGAQEYFGV---T------PDLTTLG-- 250 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~----g~-~~g~~~~~~~~~~---~------~d~~~~s-- 250 (411)
|++.-.+|+-|..+-+-+-+++++++|++|+++++.|.+.. -| ...... ...|.+ . .|-.++|
T Consensus 189 I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g-Yrd~sI~~IarEm~sYaD~~~mS~K 267 (471)
T COG3033 189 IVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG-YRDWSIEEIAREMYSYADGCTMSAK 267 (471)
T ss_pred EEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc-cccccHHHHHHHHHhhhhhheeecc
Confidence 66665555655566666669999999999999999998873 22 111100 111111 1 1122222
Q ss_pred h-hccCCcccccc-cccHH----HHHHhcCCCCccc-ccCCCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 015230 251 K-IIGGGLPVGAY-GGRRD----IMEMVAPAGPMYQ-AGTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 322 (411)
Q Consensus 251 K-~~~~G~~~g~~-~~~~~----~~~~~~~~~~~~~-~~t~~~-~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 322 (411)
| ++. .+|.+ +.+.+ +....+......- ..|+++ ..-.+.+....|..-.+.+.+++-.+..+|+.+.|+
T Consensus 268 KD~lv---nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~ 344 (471)
T COG3033 268 KDGLV---NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLE 344 (471)
T ss_pred cccee---ccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 2 333 36655 45544 4444432111111 112221 111222222233322235555666666778888888
Q ss_pred HHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchH-HHHHHHHHH-HHcCeEeccCCC-----------------
Q 015230 323 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT-KFARFYRGM-LEEGVYFAPSQF----------------- 383 (411)
Q Consensus 323 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~~Gi~v~~~~~----------------- 383 (411)
+. +.+..-+..|.-+.++..+.- +.+ |.+. -++.++-.| ++-||-..--+.
T Consensus 345 ~~----GVpi~~paGGHavfvda~~~l-phi-----p~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~ 414 (471)
T COG3033 345 EA----GVPIVQPAGGHAVFVDAGKFL-PHI-----PAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPA 414 (471)
T ss_pred hc----CCeeEecCCCceEEeehhhhc-CCC-----ChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCch
Confidence 76 554444555777777754321 011 1111 124444444 455776533210
Q ss_pred cceee--e-cCCCHHHHHHHHHHHHHHHH
Q 015230 384 EAGFT--S-LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 384 ~~~~~--~-~~~t~~~i~~~i~~l~~~~~ 409 (411)
..+|+ | ..-|.+++|..++.++++.+
T Consensus 415 elvRltipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 415 ELVRLTIPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred heeeEeccccccchhHHHHHHHHHHHHHh
Confidence 11454 4 45588999999999988764
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-06 Score=78.17 Aligned_cols=310 Identities=13% Similarity=0.093 Sum_probs=162.1
Q ss_pred HHHHHHHHhhCC-CC-CEEEEeCChHHHHHHHHHHHHhc--c---------CCcEEEEEeCCcCCCchhhhhhcCCC---
Q 015230 79 NVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAF--T---------GRERIIKFEGCYHGHADPFLVKAGSG--- 142 (411)
Q Consensus 79 ~~l~~~l~~~~~-~~-~~v~~~~~g~~a~~~al~~~~~~--~---------~~~~vi~~~~~~~~~~~~~~~~~g~~--- 142 (411)
.++-..+.+..+ .. .+-+|++||+-++..++..++-- + -++-|+..+...|-+...+++..|-+
T Consensus 144 ~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~ 223 (510)
T KOG0629|consen 144 EEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDH 223 (510)
T ss_pred HHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCce
Confidence 444444555555 22 58899999999999999877421 1 02334444445555555555555532
Q ss_pred CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc---EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCE
Q 015230 143 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE---IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGAL 219 (411)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~---~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~ 219 (411)
+..+........ ++++||+.|.+...+ +..+-++.....-|.+-| ++.|+++|.+|+++
T Consensus 224 c~~v~t~e~Gkm--------------~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~lW 285 (510)
T KOG0629|consen 224 CIKVKTDERGKM--------------IPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD----LNGIADICEKHKLW 285 (510)
T ss_pred eEEecccccCcc--------------chHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc----HHHHHHHHHhcCEE
Confidence 333222222222 689999888764323 455555554444688878 99999999999999
Q ss_pred EEEeccccc-c-ccccCccccccCCC-cchhh--hhhhccCCcccccccccHH-HHHHhcCCCC--------cccccCCC
Q 015230 220 LIFDEVMTG-F-RLAYGGAQEYFGVT-PDLTT--LGKIIGGGLPVGAYGGRRD-IMEMVAPAGP--------MYQAGTLS 285 (411)
Q Consensus 220 li~De~~~g-~-~~g~~~~~~~~~~~-~d~~~--~sK~~~~G~~~g~~~~~~~-~~~~~~~~~~--------~~~~~t~~ 285 (411)
+++|.+..| + -....-. ...|+. .+-++ --|.+++.+..|....+.+ +++.-++... .|..+--+
T Consensus 286 mHvDAAwGGglLmS~k~R~-kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DT 364 (510)
T KOG0629|consen 286 MHVDAAWGGGLLMSRKHRH-KLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDT 364 (510)
T ss_pred EEeecccccccccChhhHh-hccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeeccccc
Confidence 999999974 3 1111100 122333 23333 3588888888887766543 4444433222 12111111
Q ss_pred CC-HHHHHHHHHHHHH---Hhc------CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcch
Q 015230 286 GN-PLAMTAGIHTLKR---LKE------PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 355 (411)
Q Consensus 286 ~~-~~~~a~~~~~l~~---~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 355 (411)
++ .+.|-.-.-.++. +.. ++.+++.-++++|+.++|++.... -...+..+.-.-+.+.+..+..+....
T Consensus 365 gdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~-~~l~~~~pe~~nv~fw~vp~~lR~~~~ 443 (510)
T KOG0629|consen 365 GDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGF-EMLFELEPEHVNVCFWYVPPSLRGWQE 443 (510)
T ss_pred ccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccc-eehhcCCCceEEEeeccCchHhccCcc
Confidence 11 1111100111111 111 566788889999999999886321 111111111111122111111221111
Q ss_pred hcccchH-----HHHHHHHHHHHcCeEec---cCC--Ccceee---ecCCCHHHHHHHHHHHHHHHHh
Q 015230 356 AKKSETT-----KFARFYRGMLEEGVYFA---PSQ--FEAGFT---SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 356 ~~~~~~~-----~~~~~~~~l~~~Gi~v~---~~~--~~~~~~---~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
. ++.+ -+-.+-..+.++|-... |.+ .+.+|+ +.+.+.+++|-+++.|.++-+.
T Consensus 444 ~--~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 444 N--PERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred c--chhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 0 1111 12244455666665442 222 233454 5688999999999998876543
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-06 Score=84.45 Aligned_cols=310 Identities=9% Similarity=0.077 Sum_probs=164.4
Q ss_pred EEeccCCccccccCC-CcHHHHHHHHHHH---HcCCCCC-----CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 38 YIDYVGSWGPAIIGH-ADDQVLAALGETM---KKGTSFG-----APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~-~~~~v~~a~~~~l---~~~~~~~-----~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
+..|+.. .+++| -+|.+.+.+.+.- ....+|+ +.-+..-++...++++.+ +..+..+..+++.+.++
T Consensus 65 ~~~fig~---G~y~~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa 141 (939)
T TIGR00461 65 FKSYIGM---GYYGTILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEA 141 (939)
T ss_pred ccccCCC---CcCCCcCChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHH
Confidence 3455554 66677 5666665665432 2222332 113334566666777775 55566788888888886
Q ss_pred HHHHHHhcc-CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 108 VLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 108 al~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
+++..+... ++++|++.+..++.. ...+...-. . .+.+++.+ |++++++.+ ++++
T Consensus 142 ~~~a~~~~~~~~~~vlv~~~~hP~~-~~v~~t~a~---------~------~g~~v~~~---~~~~l~~~~-----~~~~ 197 (939)
T TIGR00461 142 MALSFNVSKKKANKFFVAKDLHPQT-KSVLHTRAK---------P------FGIEVIVV---DCSDIKKAV-----DVFG 197 (939)
T ss_pred HHHHHHhhcCCCCEEEECCCCCcch-HHHHHHHHH---------h------cCcEEEEE---cHHHHhhcC-----CEEE
Confidence 665433222 236676766666532 221111100 0 11123333 555555443 3555
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc---cc-ccccCccccccCCCcchh-hhhhhc----cCCc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT---GF-RLAYGGAQEYFGVTPDLT-TLGKII----GGGL 257 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~---g~-~~g~~~~~~~~~~~~d~~-~~sK~~----~~G~ 257 (411)
+++. ..+..|.+.+ +++|.++++++|.+++++--.. .+ ++|.+ |. |++ ..+|.| +.|-
T Consensus 198 v~~q-~Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~------Ga--Di~vg~~q~fg~p~g~GG 264 (939)
T TIGR00461 198 CLLQ-YPATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTPPGHY------GA--DIVLGSSQRFGVPMGYGG 264 (939)
T ss_pred EEEE-CCCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCCHHHc------CC--cEEeeCCCccCCCCCCCC
Confidence 5553 3344677776 9999999999999999865443 12 33332 22 443 233433 3233
Q ss_pred c-cccccccHHHHHHhcCC----------CCcc---------------cccCCCCCHHHHHH-HHHHHHHHhc---CChH
Q 015230 258 P-VGAYGGRRDIMEMVAPA----------GPMY---------------QAGTLSGNPLAMTA-GIHTLKRLKE---PGTY 307 (411)
Q Consensus 258 ~-~g~~~~~~~~~~~~~~~----------~~~~---------------~~~t~~~~~~~~a~-~~~~l~~~~~---~~~~ 307 (411)
| .|++.+++++...+... ++.+ ..+....++..++. +...+..+.. +++-
T Consensus 265 P~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA 344 (939)
T TIGR00461 265 PHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIA 344 (939)
T ss_pred CceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 4 77778887777665410 0000 00011112222221 1112333333 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCccee
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 387 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~ 387 (411)
+++..+..++.+.|++...+ .. .. .+|-.+.+.- + ...++++.+.+.++||.+.....+.++
T Consensus 345 ~~~~~~a~~l~~~L~~~G~~--~~---~~-~fF~~~~v~~-----------~-~~~~~~i~~~~~~~gi~l~~~~~~~i~ 406 (939)
T TIGR00461 345 RRIHSLTSILANGLENDPHE--LI---NK-TWFDTLTVKV-----------G-NGISSELLKAAEEFNINLRAVDTTTVG 406 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCc--cc---CC-CccceEEEEe-----------C-CCCHHHHHHHHHHCCCeeeecCCCEEE
Confidence 66777777888888764211 11 11 2222222211 0 012478999999999998876555554
Q ss_pred e--ecCCCHHHHHHHHHHHH
Q 015230 388 T--SLAHSSDDIQHTITAAE 405 (411)
Q Consensus 388 ~--~~~~t~~~i~~~i~~l~ 405 (411)
+ .-..|++||+.+++.+.
T Consensus 407 ~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 407 IALDETTTKADVENLLKVFD 426 (939)
T ss_pred EEeecCCCHHHHHHHHHHhc
Confidence 4 57889999999999984
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-06 Score=78.30 Aligned_cols=300 Identities=12% Similarity=0.035 Sum_probs=151.5
Q ss_pred HHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHH-HHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCC
Q 015230 79 NVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRL-ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 155 (411)
Q Consensus 79 ~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~-~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 155 (411)
..+...+.+..| ....++.++-+| ++.+++.+ +....+..+.++.+.--|-...-+....|..+..++.....
T Consensus 59 n~l~~d~~~~~G~~~~~~~~~vP~at-gm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~--- 134 (389)
T PF05889_consen 59 NSLVLDALRLAGLRSVKSCFVVPMAT-GMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEG--- 134 (389)
T ss_dssp HHHHHHHHHHTTHTTHCEEEEESS-H-HHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEET---
T ss_pred HHHHHHHHHHcCCccccceEEEeccc-ccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCC---
Confidence 344445555666 456677777444 44444432 22223344445544444444444445555544443321111
Q ss_pred CCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc--c
Q 015230 156 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL--A 232 (411)
Q Consensus 156 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~--g 232 (411)
+.... |.+.+++.+++...+..+.++.......+..++ . +++|+++|++||++.++..+|+ + .. -
T Consensus 135 -----d~l~t---d~~~ie~~i~~~G~~~iLcvltttscfapr~~D-~--i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~ 202 (389)
T PF05889_consen 135 -----DELIT---DLEAIEAKIEELGADNILCVLTTTSCFAPRLPD-D--IEEIAKICKEYDIPHLVNNAYG-VQSSKCM 202 (389)
T ss_dssp -----TEEEE---HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HHHH
T ss_pred -----Ceeec---cHHHHHHHHHHhCCCCeEEEEEecCccCCCCCc-c--HHHHHHHHHHcCCceEEccchh-hhHHHHH
Confidence 11112 688899998875445455555555544454443 2 9999999999999999999995 2 00 0
Q ss_pred -cCccccccCCCcc-hhhhhhhccCCccccc-c--cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CC
Q 015230 233 -YGGAQEYFGVTPD-LTTLGKIIGGGLPVGA-Y--GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PG 305 (411)
Q Consensus 233 -~~~~~~~~~~~~d-~~~~sK~~~~G~~~g~-~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~ 305 (411)
..-.....|..|. +=++.|-|-- |+|. + ...+..+..+....+...+.+ + ..-.....+.+-.. ..
T Consensus 203 ~~i~~a~~~GRvda~vqS~dkNF~V--PvGgai~As~~~~~i~~vs~~YpGRas~s---p--~ld~~itLl~LG~~g~~~ 275 (389)
T PF05889_consen 203 HLIQQAWRVGRVDAFVQSTDKNFMV--PVGGAIMASFDPSGILAVSKEYPGRASAS---P--SLDLFITLLSLGCTGYGA 275 (389)
T ss_dssp HHHHHHHHHSTCSEEEEEHHHHHCE--ESSHEEEEESSHHHHHHHHHTSHSHBTSH---H--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcceeeeecCCCEEe--cCCCcEEEecCHHHHHHHHHHhhhhhhcc---c--chHHHHHHHHHhhhHHHH
Confidence 0000001233333 3367786642 2332 2 234566666654322222211 1 12222222222222 56
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec----c
Q 015230 306 TYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----P 380 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~ 380 (411)
+.....+...++.++|+++..+++.. .+.+..-..+.+.+.... . ....+...+...|..+||.-. +
T Consensus 276 ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~--~------~~~k~~~~lgs~Lf~R~VsG~RvV~~ 347 (389)
T PF05889_consen 276 LLKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLY--E------ISQKDGTFLGSMLFKRGVSGIRVVTP 347 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCC--T------CCSSHHHHHHHHHHHTTEESSEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccch--h------hccchhhhHHHHHHhCCcccceeecc
Confidence 67778888899999999988777622 122222334455553211 1 011344789999999976432 2
Q ss_pred CCC-----------cceee--ecCCCHHHHHHHHHHHHHHHH
Q 015230 381 SQF-----------EAGFT--SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 381 ~~~-----------~~~~~--~~~~t~~~i~~~i~~l~~~~~ 409 (411)
... +.+.+ ...++++|+|.++++|+++++
T Consensus 348 ~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 348 GGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 211 11333 367799999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-05 Score=69.76 Aligned_cols=281 Identities=20% Similarity=0.169 Sum_probs=140.6
Q ss_pred cHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEEEe---CChHHHHHHHHHHHHhccCCcEEEEE
Q 015230 54 DDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRFV---NSGTEACMGVLRLARAFTGRERIIKF 124 (411)
Q Consensus 54 ~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~---~~g~~a~~~al~~~~~~~~~~~vi~~ 124 (411)
..+|++|+.+.=-. .++|+|-+.-++.+.+-+++.++ .++.++= .|||.|+..+|.. .+.+++.++..
T Consensus 26 q~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfg-aE~ALVRpq~vSGTHAi~~~Lfg--~LrpGD~ll~~ 102 (403)
T PF06838_consen 26 QLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFG-AEDALVRPQFVSGTHAIALALFG--VLRPGDELLSI 102 (403)
T ss_dssp HHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT--SEEEEETTS-SHHHHHHHHHHH--H--TT-EEEES
T ss_pred HHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhC-chhhhhcccccchHHHHHHHHHh--cCCCCCeEEEc
Confidence 44566666542111 13567778888999999999994 4444432 3799999999974 34466666665
Q ss_pred eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-----CCHHHHHHHHHcCCCcEEEEEEcccCCCCCcc
Q 015230 125 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEPVVGNSGFI 199 (411)
Q Consensus 125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~ 199 (411)
.+.=+-......-..|.+ .+.....+.....++. -|++.+++.++ .+++++++.-.-+-.---
T Consensus 103 tG~PYDTL~~VIG~~g~~---------~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~R~ 170 (403)
T PF06838_consen 103 TGKPYDTLEEVIGIRGNG---------PGSLKEFGIKYREVPLTEDGTIDWEAIKKALK---PNTKMVLIQRSRGYSWRP 170 (403)
T ss_dssp SSS--CCHHHHHTSSSSS---------SSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH---TTEEEEEEE-S-TTSSS-
T ss_pred CCCchhhHHHHhCCCCCC---------CCChHHhCceeEEEeecCCCCcCHHHHHHhhc---cCceEEEEecCCCCCCCC
Confidence 543222333333333321 1111111111222221 17999999998 478888886532221111
Q ss_pred CCCHHHHHHHHHHHHHh--CCEEEEecccccc-ccccCccccccCCCcch--hhhhhhccCCc-c-cccccccHHHHHHh
Q 015230 200 APKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGL-P-VGAYGGRRDIMEMV 272 (411)
Q Consensus 200 ~~~~~~l~~i~~l~~~~--~~~li~De~~~g~-~~g~~~~~~~~~~~~d~--~~~sK~~~~G~-~-~g~~~~~~~~~~~~ 272 (411)
..+-+.++++.+..++. ++++++|.+|..| ..-.+. .+..|+ .|+=|-.+||+ | -||+++++++++..
T Consensus 171 sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~-----~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~ 245 (403)
T PF06838_consen 171 SLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT-----EVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERA 245 (403)
T ss_dssp ---HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG-----GGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc-----ccchhheeccceeCCCCCccCcCCEEechHHHHHHH
Confidence 22333466666666664 7899999999877 332221 233454 48889999995 5 56789999998876
Q ss_pred cC-----CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeecceEEEEEe
Q 015230 273 AP-----AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFT 346 (411)
Q Consensus 273 ~~-----~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~ 346 (411)
.. .-..-.+.|++.+... .+.+ ...+.......+-.......++++..+. |.+.+ ...-.+-.+.+
T Consensus 246 a~RLTaPGiG~e~G~t~~~~R~~----~QGl--FlAP~vV~eAlKgaif~A~~fe~lG~~v~P~~~~-~R~DiIQai~l- 317 (403)
T PF06838_consen 246 AYRLTAPGIGKEVGATLGTNRLM----FQGL--FLAPHVVGEALKGAIFAAALFEKLGFEVSPKPDD-PRSDIIQAIEL- 317 (403)
T ss_dssp HHHHS-TTTGGGSS--TTTHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-EEES-TTS---SSS-EEEE--
T ss_pred HhhhcCCccccccccCcchHHHH----HhHH--hhchHHHHHHHHHHHHHHHHHHHcCCcCCCCCCC-CCCceEEEEEC-
Confidence 41 1111122233222111 1111 1114455555666666666667664321 11111 22244555555
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHc
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEE 374 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 374 (411)
.+.+....+++...+.
T Consensus 318 ------------~~~e~l~~FC~~iQ~~ 333 (403)
T PF06838_consen 318 ------------GSPEKLIAFCQGIQAA 333 (403)
T ss_dssp ------------SSHHHHHHHHHHHHHT
T ss_pred ------------CCHHHHHHHHHHHHhc
Confidence 3455667888887765
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.6e-07 Score=79.65 Aligned_cols=260 Identities=11% Similarity=0.037 Sum_probs=139.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhc---c-CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAF---T-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~---~-~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
....|+|.+|+++.+.+|+-.+-.. . ++-+|+...|-|. .+.... ..+..- .+...
T Consensus 65 ~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~-~Y~~qt------------~~f~s~-------~y~w~ 124 (363)
T PF04864_consen 65 DGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYS-SYPEQT------------DFFDSR-------LYKWA 124 (363)
T ss_dssp TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--C-HHHHHC------------CCT-BT-------TEEEE
T ss_pred cCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCcc-chHHHH------------Hhcccc-------Ccccc
Confidence 3568999999999999998643222 1 2334555444443 222111 001100 00000
Q ss_pred CCCHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCc
Q 015230 167 FNDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244 (411)
Q Consensus 167 ~~d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~ 244 (411)
- |..... .. .++...=+++.|+|+-|. +.. .+++.-+..+|.|-+|-.= .+.-... .+-
T Consensus 125 G-da~~~~---~~~~~~~~IElVTSPNNPDG~-lr~---------~V~~g~~~k~I~D~AYYWPhyTpI~~~-----aD~ 185 (363)
T PF04864_consen 125 G-DASNFK---NSDNPSPYIELVTSPNNPDGQ-LRE---------AVLNGSSGKVIHDLAYYWPHYTPITAP-----ADH 185 (363)
T ss_dssp E-ECCCGT---T-S-CCGEEEEEESS-TTT----------------SSTTTEEEEEEE-TT-STTTS---S------B--
T ss_pred c-cHHhhc---cCCCCCCeEEEEeCCCCCccc-ccc---------hhcCCCCcceeeeeeeecccccccCCC-----CCC
Confidence 0 111111 11 134555677777665543 322 2345556678999999511 1111111 122
Q ss_pred c--hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--------CChHHHHHH
Q 015230 245 D--LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--------PGTYEYLNK 312 (411)
Q Consensus 245 d--~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--------~~~~~~~~~ 312 (411)
| +.|+||.-| +|.|+||... .+++.+.+. .....+|.+.+-=++.-++..|+.+.+ +++.+.-++
T Consensus 186 DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~---~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~ 262 (363)
T PF04864_consen 186 DIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMT---KYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYS 262 (363)
T ss_dssp SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHH---HHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHH
T ss_pred ceEEEEEecccCccccccceeeecCHHHHHHHH---HHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHH
Confidence 4 459999998 8999999966 455666665 344556777777777777777765433 146666666
Q ss_pred HHHHHHHHHHHHHHhcCCc--------------eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe
Q 015230 313 ITGELTQGIIDAGKKAGHA--------------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 378 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~--------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 378 (411)
..+.-+++|++....-... ....+...+.|+.+..... ..+...|++.||+.
T Consensus 263 ~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed--------------~DC~~~l~~~~I~t 328 (363)
T PF04864_consen 263 TMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREED--------------EDCYAVLREAKIIT 328 (363)
T ss_dssp HHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGG--------------SSHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCccc--------------ccHHHHHHhCCccc
Confidence 6666666666664322111 1123346789999964321 34677888889999
Q ss_pred ccCC-----CcceeeecCCCHHHHHHHHHHHHH
Q 015230 379 APSQ-----FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 379 ~~~~-----~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
+.|. ...+|+++..++++.+.++++|..
T Consensus 329 r~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 329 RSGVLFGADSRYVRLSMLKRDDDFDQLLERLSK 361 (363)
T ss_dssp EEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHC
T ss_pred CCCCccCCCCCeEEEeccCCHHHHHHHHHHHHh
Confidence 8873 335899999999999999999975
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-06 Score=72.74 Aligned_cols=279 Identities=16% Similarity=0.123 Sum_probs=147.9
Q ss_pred EEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcC-CCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
+.+-||+.|+..+-........+..|.+..|.+.. ........| ..+...++-+... ..+ |++.+-
T Consensus 103 vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~n-H~~if~~aGf~tv~~Y~yWd~~~---------k~~---d~e~~L 169 (410)
T KOG1412|consen 103 VQSLSGTGALRIAADFLATFYNKNTVYVSNPTWEN-HHAIFEKAGFTTVATYPYWDAEN---------KCV---DLEGFL 169 (410)
T ss_pred eeeccccchhhhhHHHHHHhcccceeEecCCchhH-HHHHHHHcCCceeeeeeeecCCC---------cee---cHHHHH
Confidence 45668998988877644444455566666666653 333333333 2222211111110 011 778777
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC----cccccc---CCCcchh
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG----GAQEYF---GVTPDLT 247 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~----~~~~~~---~~~~d~~ 247 (411)
..++..|+.-..++.-.-+|++| +.|+.|++.+|+++-++.+...+.|-+|-||..|.+ ++..++ |. +-++
T Consensus 170 sdl~~APe~si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~-e~fv 247 (410)
T KOG1412|consen 170 SDLESAPEGSIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGF-ELFV 247 (410)
T ss_pred HHHhhCCCCcEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCC-eEEE
Confidence 77776655444444444455555 678899999999999999999999999998833321 122211 11 1122
Q ss_pred --hhhhhcc-CCcccccc---cccHHHHHHhcCCCCcccccCC-CCCHHHHHHHHHHHH------HHhc--CChHHHHHH
Q 015230 248 --TLGKIIG-GGLPVGAY---GGRRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLK------RLKE--PGTYEYLNK 312 (411)
Q Consensus 248 --~~sK~~~-~G~~~g~~---~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~a~~~~~l~------~~~~--~~~~~~~~~ 312 (411)
||+|-|+ =|-|+|-+ +-++..+..+........-+++ +++...+......|+ .+.. ..+..++++
T Consensus 248 ~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~ 327 (410)
T KOG1412|consen 248 CQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKK 327 (410)
T ss_pred EhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 7999887 36688865 3345555544422111122233 223333333333332 1111 344456666
Q ss_pred HHHHHHHHHHHHHHhcCCce-EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC
Q 015230 313 ITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA 391 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~ 391 (411)
++..+++.|.++.. .+-+- .+...|+|-.--+. -..+-....++.|++.+.+ .+.++ .
T Consensus 328 MR~aLrd~L~aL~T-PGtWDHI~~QiGMFSyTGLt-----------------p~qV~~li~~h~vyLl~~G--RInis-G 386 (410)
T KOG1412|consen 328 MRTALRDHLVALKT-PGTWDHITQQIGMFSYTGLT-----------------PAQVDHLIENHKVYLLSDG--RINIS-G 386 (410)
T ss_pred HHHHHHHHHHhcCC-CCcHHHHHhhccceeecCCC-----------------HHHHHHHHHhceEEEecCC--cEeee-c
Confidence 66666666666632 12111 23444554222121 1344455556688888766 33332 3
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
.+..+++....++.++.+.
T Consensus 387 LN~~NveyVAkAIde~Vr~ 405 (410)
T KOG1412|consen 387 LNMKNVEYVAKAIDETVRA 405 (410)
T ss_pred cccccHHHHHHHHHHHHHh
Confidence 3445566666666665543
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-05 Score=68.01 Aligned_cols=328 Identities=16% Similarity=0.133 Sum_probs=164.2
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCC-------CCCCCC----HHHHHHHHHHHhhCC-CCC---EEEEeCChH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT-------SFGAPC----LLENVLAEMVISAVP-SIE---MVRFVNSGT 102 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-------~~~~~~----~~~~~l~~~l~~~~~-~~~---~v~~~~~g~ 102 (411)
-++++.. - ++.+..+.+|+-..|.+-- .|.+-. +.+....++-.+.++ +++ .=+..-||+
T Consensus 42 gieLIaS---E--NFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGS 116 (477)
T KOG2467|consen 42 GIELIAS---E--NFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGS 116 (477)
T ss_pred ceeEeec---c--cchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCC
Confidence 3555554 2 2457778888888888821 121222 222333344445664 322 123444799
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
.|+.++... .+.+++.++..+-+.-|+..-.....++.+-- ..-.+...|.......-.+ |.|.||+.....
T Consensus 117 PANfavYta--ll~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa-~SiyFeSmPYkv~~~TG~I---DYD~Le~~A~~f-- 188 (477)
T KOG2467|consen 117 PANFAVYTA--LLKPHERIMGLDLPSGGHLSHGYQTPTKKISA-TSIYFESMPYKVDPSTGYI---DYDKLEKTATLF-- 188 (477)
T ss_pred chhhHHHhh--hcCCCCeeeeccCCCCCccccccccCCceeee-eeeecccCceeeCCCCCce---ehHHHHHHHHhc--
Confidence 999887764 34567788887766554432211111111000 0011111111100011111 788888776654
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccc-ccc-ccc-cCccccccCCCcchh--hhhhhccCCc
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLA-YGGAQEYFGVTPDLT--TLGKIIGGGL 257 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~-~g~-~~g-~~~~~~~~~~~~d~~--~~sK~~~~G~ 257 (411)
.++++|+-. + .+.-.-+ ..+++++|.+.|++|++|=+| +|+ ..| ....+++. |++ |.-|++-| -
T Consensus 189 rPk~iiaG~--S---aY~R~~D-YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~----DiVTTTTHKsLRG-P 257 (477)
T KOG2467|consen 189 RPKLIIAGT--S---AYSRLID-YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC----DIVTTTTHKSLRG-P 257 (477)
T ss_pred CCcEEEecc--c---cchhhcc-HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----ceeeccccccccC-C
Confidence 566666622 1 1111112 789999999999999999999 476 444 23334433 454 56688874 1
Q ss_pred ccccccccHHH---------------HHHhcC-CCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 015230 258 PVGAYGGRRDI---------------MEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELT 318 (411)
Q Consensus 258 ~~g~~~~~~~~---------------~~~~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~ 318 (411)
|.|.+..++.+ -+.++. .-+..++++.+-...++|++ |+.... ++...++.++.+.+.
T Consensus 258 Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvA---LkQa~tpefk~Yq~qV~~Nakala 334 (477)
T KOG2467|consen 258 RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVA---LKQAMTPEFKEYQKQVLKNAKALA 334 (477)
T ss_pred cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHH
Confidence 34444333311 111211 11233333433333344443 333333 566677888889998
Q ss_pred HHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec----cC-----CCcceee
Q 015230 319 QGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS-----QFEAGFT 388 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~-----~~~~~~~ 388 (411)
+.|.+.. ...-..| ...++.+++....+ ++...+++++.+ +|.+. |+ ....+|+
T Consensus 335 ~~l~~~G----y~lvtgGTDnHlvLvDLr~~G~---------dGarvE~vle~~---~I~~NKNtvpGD~Sal~PgGiRi 398 (477)
T KOG2467|consen 335 SALISRG----YKLVTGGTDNHLVLVDLRPKGV---------DGARVEKVLELC---HIALNKNTVPGDKSALSPGGIRI 398 (477)
T ss_pred HHHHHcC----ceEecCCccceEEEEeccccCC---------chHHHHHHHHHh---hhhhcCCcCCCCccccCCCceec
Confidence 8888773 2222222 24477777754321 233333343333 33221 11 1223676
Q ss_pred --e----cCCCHHHHHHHHHHHHHHH
Q 015230 389 --S----LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 389 --~----~~~t~~~i~~~i~~l~~~~ 408 (411)
| -...++|.++..+-|.+++
T Consensus 399 GtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 399 GTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred cchhhcccCccHHHHHHHHHHHHHHH
Confidence 3 2335677777777776654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=75.02 Aligned_cols=273 Identities=15% Similarity=0.187 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhCCCCCE--EEEeCChHHHHHHHHHHHHhccCC-cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 78 ENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 78 ~~~l~~~l~~~~~~~~~--v~~~~~g~~a~~~al~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
.-++...++++. +.|. ...-.+++.+-++++.+.+...++ +++++ +.+-|..+.......-..
T Consensus 112 lfe~Qs~i~eLT-GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv-~~~~hP~~~~v~~t~a~~------------ 177 (429)
T PF02347_consen 112 LFEYQSMICELT-GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLV-PESLHPQTRAVLRTYAAP------------ 177 (429)
T ss_dssp HHHHHHHHHHHH-TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEE-ETTS-CHHHHHHHHHCCH------------
T ss_pred HHHHHHHHHHhh-CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEE-cCCcChhhHHHHHHhhhh------------
Confidence 446666677776 4443 356667777777666544443333 35555 455554444433222110
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccc----ccc-
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM----TGF- 229 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~----~g~- 229 (411)
.+.+++.++.++-.... .+++++|+++.++ .-|.+.+ +++|.++++++|.++|+ .+- .++
T Consensus 178 ---~g~~iv~~~~~~~~~~d------~~~~a~v~vq~Pn-~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~aL~~l~ 242 (429)
T PF02347_consen 178 ---LGIEIVEVPLDEDGTTD------DDDTAAVMVQNPN-TFGVFED----IKEIADIAHAAGALVIV-GADPNALGGLK 242 (429)
T ss_dssp ---CCEEEEEE-BBTTCSB-------STTEEEEEEESS--TTSB--T----HHHHHHHHHHTT-EEEE-CGGCCGCCTC-
T ss_pred ---CCeEEEEecccccCCcc------ccCeEEEEeecCC-CCceEee----HHHHHHHHHHcCCEEEE-ecCHHHHhCcC
Confidence 01123333322100000 3578888886544 3577777 99999999999999987 433 122
Q ss_pred ccccCccccccCCCcchh-----hhhhhccCCcc-cccccccHHHHHHhcC----------CCCc---------------
Q 015230 230 RLAYGGAQEYFGVTPDLT-----TLGKIIGGGLP-VGAYGGRRDIMEMVAP----------AGPM--------------- 278 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~-----~~sK~~~~G~~-~g~~~~~~~~~~~~~~----------~~~~--------------- 278 (411)
++|.+ |. ||+ +|+=.+++|-| .|++.++++++..+.. ....
T Consensus 243 ~Pge~------GA--DI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrRe 314 (429)
T PF02347_consen 243 SPGEY------GA--DIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRRE 314 (429)
T ss_dssp -GGGG------T---SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGC
T ss_pred Chhhc------Cc--cEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeecccccccccccc
Confidence 33322 32 443 34444443445 7888888877665531 1100
Q ss_pred ccccCCCCCHHHHH-HHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcc
Q 015230 279 YQAGTLSGNPLAMT-AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 354 (411)
Q Consensus 279 ~~~~t~~~~~~~~a-~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 354 (411)
...+..+.++.-++ ++...+..+.. +++-++...+..++.++|++. ...++. +.-++-.+....
T Consensus 315 KAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~~~----~~~f~e~v~~~~------- 382 (429)
T PF02347_consen 315 KATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLPFD----NPFFFEFVVVFS------- 382 (429)
T ss_dssp CSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBECSS----SSSBSSEEEEES-------
T ss_pred chhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccC----CCCceeeeeecC-------
Confidence 01122233333333 23333333333 566678888899999998875 222221 112221221111
Q ss_pred hhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHH
Q 015230 355 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAA 404 (411)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l 404 (411)
.. ....++.+.....|+.........+-+ .=..|+++||+++++|
T Consensus 383 ----~~-~~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 383 ----KD-KEVEELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ----S--HHHHHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ----Cc-HHHHHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 11 233446666666676655444443333 4566889999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-05 Score=68.21 Aligned_cols=301 Identities=13% Similarity=0.111 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHhhCC-----------CCCEEEEeCChHHHHHHHHHHHHhc-----cCC-----------cEEEEEeCC
Q 015230 75 CLLENVLAEMVISAVP-----------SIEMVRFVNSGTEACMGVLRLARAF-----TGR-----------ERIIKFEGC 127 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-----------~~~~v~~~~~g~~a~~~al~~~~~~-----~~~-----------~~vi~~~~~ 127 (411)
++++.-..+||.+..+ ...-|++ .+++|++..++..+|.- ..+ +-|.....-
T Consensus 112 TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ-~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDq 190 (511)
T KOG0628|consen 112 TELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQ-GTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQ 190 (511)
T ss_pred HHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEe-cCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCc
Confidence 7888888899998662 1223333 46889999998776532 111 235556666
Q ss_pred cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC--CcEEEEEEcccCCCCCccCCCHHH
Q 015230 128 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEIAAIILEPVVGNSGFIAPKPDF 205 (411)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~~vi~~~~~~~~G~~~~~~~~ 205 (411)
.|....-+...++-..+.++.....+. +.+.|.+++++.. +-+- |++-.+.+++|.-..+.
T Consensus 191 ahssveka~~i~~VklR~l~td~n~~m--------------r~~~L~~AIe~D~arGlIP-f~v~at~GTT~~ca~D~-- 253 (511)
T KOG0628|consen 191 AHSSVEKACLIAGVKLRALPTDENFGM--------------RGDTLRKAIEEDIARGLIP-FFVCATLGTTSSCAFDE-- 253 (511)
T ss_pred ccchHHHhHhhcceeEEEeecccCcCC--------------CHHHHHHHHHHHHhCCCcc-EEEEEeecCcccccccc--
Confidence 777777766666665555444332232 6788999988631 2233 33334455555555544
Q ss_pred HHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC-cchh--hhhhhcc-----------CCccccc-ccccHHHH
Q 015230 206 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT-PDLT--TLGKIIG-----------GGLPVGA-YGGRRDIM 269 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~-~d~~--~~sK~~~-----------~G~~~g~-~~~~~~~~ 269 (411)
+.+|..+|+++|++|.+|.+|+|- ..-+.+-.-.-|+. .|-. ..+|++- .|.++.- ..+++-.+
T Consensus 254 l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL 333 (511)
T KOG0628|consen 254 LEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYL 333 (511)
T ss_pred HHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhh
Confidence 999999999999999999999854 11111100011221 1211 2355442 2222221 12222222
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHH------HHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeecceEE
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHT------LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFG 342 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~------l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~ 342 (411)
+.-.... ...+.-=++...--..+ ++.+.-+++++++++..+. .+.+.++..+-+.. ......=.++.
T Consensus 334 ~h~~~~~----~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~L-a~~fe~lv~~d~~FE~~~~~~lgLvc 408 (511)
T KOG0628|consen 334 KHAYQGS----APDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRL-AKEFETLVRADPRFEIVNKRILGLVC 408 (511)
T ss_pred cchhhcc----CCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhhcCCcceeecccccceeE
Confidence 1111000 00111111111112222 2333336666666665544 45556654333321 11122222445
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCCcc---eee---ecCCCHHHHHHHHHHHHHHHHh
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFEA---GFT---SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~~~---~~~---~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|.+.+. ....+++.+.+.+. .|.+.|..... +|+ ..-++++++++.-+.|.+..+.
T Consensus 409 FRlk~~------------N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 409 FRLKGD------------NEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred EeecCC------------cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 555432 23336677766655 77777764222 333 3556889999999988877654
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.9e-05 Score=67.76 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=86.9
Q ss_pred EEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC--cccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV--ATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
+.|-|||.|+..+-.....+-+...|.+.+|++-- ....-...|..+ ++.+.+...++ |.+.+
T Consensus 124 vQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgN-h~~if~~ag~~~~~yrYyd~~t~gl--------------d~~g~ 188 (427)
T KOG1411|consen 124 VQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGN-HKNIFKDAGLPVKFYRYYDPKTRGL--------------DFKGM 188 (427)
T ss_pred EEeccCcchhhHHHHHHHhhccccceeecCCcccc-cCccccccCcceeeeeecccccccc--------------chHHH
Confidence 44557888887766555456666677777776643 222222222211 11122222232 55655
Q ss_pred HHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC----cccccc---CCCcch
Q 015230 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG----GAQEYF---GVTPDL 246 (411)
Q Consensus 174 ~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~----~~~~~~---~~~~d~ 246 (411)
-+-+.+.++.-.+++--.-++++| +.|+.|.+++|.++-++.+.+-++|-+|-||..|.. .+..++ |...-+
T Consensus 189 ledl~~~p~gs~ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~l 267 (427)
T KOG1411|consen 189 LEDLGEAPEGSIILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILL 267 (427)
T ss_pred HHHHhcCCCCcEEEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEe
Confidence 555555544433333333444455 678899999999999999999999999998833321 111111 222111
Q ss_pred h-hhhhhcc-CCcccccc
Q 015230 247 T-TLGKIIG-GGLPVGAY 262 (411)
Q Consensus 247 ~-~~sK~~~-~G~~~g~~ 262 (411)
. |+.|-+| =|=|+|.+
T Consensus 268 aQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 268 AQSYAKNMGLYGERVGAL 285 (427)
T ss_pred ehhhhhhcchhhhcccee
Confidence 1 7889887 36688876
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0064 Score=53.14 Aligned_cols=266 Identities=16% Similarity=0.148 Sum_probs=137.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCC---CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCccc
Q 015230 70 SFGAPCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 146 (411)
Q Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~---~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~ 146 (411)
+|+|-+--++.|.+-+++.++. .-+.-|. ||+.|+..||.. .+.+++..+...++=+-......-+.|.+.-.
T Consensus 59 GYGydD~GRdtLe~vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg--~LRpgDell~i~G~PYDTLeevIG~rg~~~gS- 134 (416)
T COG4100 59 GYGYDDLGRDTLERVYAQVFGAEAALVRPQII-SGTHAIACALFG--ILRPGDELLYITGSPYDTLEEVIGLRGEGQGS- 134 (416)
T ss_pred CCCccccchhHHHHHHHHHhccccceeeeeee-cchhHHHHHHHh--ccCCCCeEEEecCCcchhHHHHhccCCCCccc-
Confidence 3455555577888888888862 2233344 699999998864 34466666666554333333333333321111
Q ss_pred CCCCCCCCCCCCCCceeecCCC-----CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCH--HHHHHHHHHHHHh--C
Q 015230 147 GLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP--DFLNAIRRITKEN--G 217 (411)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~--~~l~~i~~l~~~~--~ 217 (411)
...++.....++.. |.+.++..++ +++++|.+.-.- |=.+.|+- +.++++.++.++- +
T Consensus 135 --------L~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~---~~tkli~IQRS~--GY~~RpS~~I~eI~~~i~~vk~inpn 201 (416)
T COG4100 135 --------LKDFGIKYKAVPLTADGKIDIQAVKTAIS---DRTKLIGIQRSK--GYAWRPSLSIAEIEEMITFVKEINPN 201 (416)
T ss_pred --------HHHhCcceeecccccCCcccHHHHHHhcC---ccceEEEEEecc--CcCCCCcccHHHHHHHHHHHHhcCCC
Confidence 00001011111111 7888888887 568888775422 22233322 2255666666664 6
Q ss_pred CEEEEecccccc-ccccCccccccCCCcchh--hhhhhccCCcc--cccccccHHHHHHhcC--CCCcccccCCCCCHHH
Q 015230 218 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLP--VGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLA 290 (411)
Q Consensus 218 ~~li~De~~~g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~--~g~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~ 290 (411)
+++++|.+|..| ..-.+ ..+..|++ |+=|--+||+- -||++++++++++-.- ..+. .+ .-++. .
T Consensus 202 ~ivFVDNCYGEFvE~~EP-----t~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaPG-IG-~e~Ga--t 272 (416)
T COG4100 202 VIVFVDNCYGEFVEEKEP-----THVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAPG-IG-REGGA--T 272 (416)
T ss_pred EEEEEeccchhhhhccCc-----cccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecCC-cc-ccccc--c
Confidence 899999999877 22211 22345654 77788888853 5678999999876531 1111 00 11111 1
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHH
Q 015230 291 MTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 369 (411)
Q Consensus 291 ~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (411)
....+....-+.- +.+..+..+-.......|+++.....-..+.+..-++-.+.+ ++.+.+..+++
T Consensus 273 ~~~l~~myqGlFlAPhvv~qa~Kga~fta~~le~lg~~~~P~~~~kRtDlIQavkf-------------~~~eKmIaFcq 339 (416)
T COG4100 273 LYSLREMYQGLFLAPHVVSQAVKGAHFTARFLEKLGFPVNPKYDAKRTDLIQAVKF-------------GSKEKMIAFCQ 339 (416)
T ss_pred HHHHHHHHhhhccchHHHHHHhhhhHHHHHHHHHcCCCCCCcccccccchhhheec-------------CCHHHHHHHHH
Confidence 1111222221111 566666666666666666666321111111222233444444 45566677777
Q ss_pred HHHHc
Q 015230 370 GMLEE 374 (411)
Q Consensus 370 ~l~~~ 374 (411)
.+...
T Consensus 340 aiQ~a 344 (416)
T COG4100 340 AIQAA 344 (416)
T ss_pred HHhhc
Confidence 76644
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0028 Score=57.06 Aligned_cols=312 Identities=14% Similarity=0.035 Sum_probs=159.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-----------CHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 53 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~-----------~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.+|++++.+.+.+.+..+.+.+ .+...+..+.+.++++ .--+|+|..||..+-..++.+-+.-.++.
T Consensus 16 lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~ 95 (365)
T COG1932 16 LPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGT 95 (365)
T ss_pred CCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCc
Confidence 6788888888887774332211 3344556666667775 45588888876666555554321211211
Q ss_pred EEEEEeCCcCCCchhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 120 RIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
+ .+..+.+. ...... ...+......... . ...+.-.+| +++..+ +. ++.+-|++.++....|+
T Consensus 96 ~-yv~~g~Ws-~~a~~eA~~~~~~~~~~~~~---~----~~~~~~~iP--~~~~~~--~~---~~~ayv~~~~NeTi~Gv 159 (365)
T COG1932 96 D-YVDTGAWS-EFAIKEAKKVGKQPKLIDAR---I----EEAGYGSIP--DLSKWD--FS---DNDAYVHFCWNETISGV 159 (365)
T ss_pred e-eEeeeehh-HhHHHHHHHhcccccccccc---e----eccCccCCC--Chhhcc--cC---CCccEEEEecCCcccce
Confidence 1 22222222 111111 1112211110000 0 000011111 333322 21 23444667676666776
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC-CcccccccccHHHHHHhcCC
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPA 275 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~~~~~~~~~~~ 275 (411)
-.++.. .+... .++|+|-.-.=+ +.. .+.. .-|++ +..|-+|+ | ++.++.+++++++....
T Consensus 160 ~v~~~p------~~~~~--~~~v~D~SS~il--sr~--iDvs--k~dviyagaQKnlGpaG--ltvvIvr~~~l~r~~~~ 223 (365)
T COG1932 160 EVPELP------DIGSD--GLLVADASSAIL--SRP--IDVS--KYDVIYAGAQKNLGPAG--LTVVIVRPDLLERAESY 223 (365)
T ss_pred EccCCC------CCCCC--ceEEEecccHHh--cCC--CChh--HcceEEEehhhccCccc--eEEEEEcHHHHhccccc
Confidence 655321 11111 788898655311 011 1111 12333 56799984 6 77778999999888642
Q ss_pred -CC--------cccccCCCCCH-HHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-e
Q 015230 276 -GP--------MYQAGTLSGNP-LAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-M 340 (411)
Q Consensus 276 -~~--------~~~~~t~~~~~-~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~ 340 (411)
-+ ...+++++.+| ++.......++.+.. +.+.++.+++.+.+.+.+.+- ..+........+.. -
T Consensus 224 ~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~~~~RS~mn 302 (365)
T COG1932 224 TLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS-DFYRNLVAKANRSRMN 302 (365)
T ss_pred CCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-Cccccccchhhcccee
Confidence 11 12234554444 444444555665555 566677777777777777665 11111111122222 3
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.|.+. +.+..+.+.+.+.++|+....+.. ..+|.+ -++..++++.+++-++.+.++
T Consensus 303 V~f~~~-------------~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 303 VTFTLV-------------DAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred EEEEcC-------------cHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 444442 233446788888888888766631 125653 466889999999998877654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.006 Score=62.67 Aligned_cols=307 Identities=13% Similarity=0.076 Sum_probs=154.3
Q ss_pred EEeccCCccccccCCCcHHHH-HHHHHHHH---cCCCCC-----CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVL-AALGETMK---KGTSFG-----APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~-~a~~~~l~---~~~~~~-----~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
+..|++. -+++|--|.++ +.+.+--. ..++|+ +.-+..-++...++++.+ +..+...-.+++.+-|+
T Consensus 80 ~~~fiG~---G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA 156 (954)
T PRK12566 80 WTSLIGM---GYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEA 156 (954)
T ss_pred ccccccc---cccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHH
Confidence 4455554 77887444443 65554311 122222 112333455566666664 33344555567776664
Q ss_pred HHHHHHhccC--CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 108 VLRLARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 108 al~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
++. ++...+ +.++++.+..++ .+...+...-. ..++ +++ .+++++.+. ++++
T Consensus 157 ~~m-a~~~~~~k~~~~~v~~~~hP-~~~~v~~t~~~---------~~g~------~i~------~~~~~~~~~---~~~~ 210 (954)
T PRK12566 157 MAL-AKRVAKSKSNRFFVDEHCHP-QTLSVLRTRAE---------GFGF------ELV------VDAVDNLAA---HAVF 210 (954)
T ss_pred HHH-HHHHhhcCCCEEEECCCCCH-HHHHHHHHhhh---------cCCc------EEE------EcchhhcCC---CCEE
Confidence 443 333333 455555444443 32222211111 1111 111 133444333 3578
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE--ecccccc--ccccCccccccCCCcchh-----hhhhhccCC
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGF--RLAYGGAQEYFGVTPDLT-----TLGKIIGGG 256 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~--De~~~g~--~~g~~~~~~~~~~~~d~~-----~~sK~~~~G 256 (411)
++++...+ ..|.+.+ +++|.++++++|.++|+ |-.--++ .+|.+ | .||+ .|+=.++.|
T Consensus 211 ~v~vq~P~-~~G~i~d----~~~i~~~~h~~gal~~~~~d~laL~ll~~Pge~------G--ADI~vG~~Q~fGvp~~~G 277 (954)
T PRK12566 211 GALLQYPD-THGEIRD----LRPLIDQLHGQQALACVAADLLSLLVLTPPGEL------G--ADVVLGSTQRFGVPMGYG 277 (954)
T ss_pred EEEEECCC-CceEEcc----HHHHHHHHHHcCCEEEEEeCHHHHhCCCChhhc------C--CcEEeeCCCcCCCCCCCC
Confidence 88775433 3577766 99999999999998662 2211122 23332 2 2443 244444423
Q ss_pred cc-cccccccHHHHHHhcC----------CCCc---------------ccccCCCCCHHHHHHHHHHHH-HHhc---CCh
Q 015230 257 LP-VGAYGGRRDIMEMVAP----------AGPM---------------YQAGTLSGNPLAMTAGIHTLK-RLKE---PGT 306 (411)
Q Consensus 257 ~~-~g~~~~~~~~~~~~~~----------~~~~---------------~~~~t~~~~~~~~a~~~~~l~-~~~~---~~~ 306 (411)
-| .|++.+++++...+.. .++. ...+..+.++.-+|...+..- .+.. +++
T Consensus 278 GP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~i 357 (954)
T PRK12566 278 GPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRI 357 (954)
T ss_pred CCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 35 7888888776655531 0000 011111223333333222222 2222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcce
Q 015230 307 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 386 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~ 386 (411)
-+++.++..++.+.|++. ++.. ....+|--|.+.- . ..+.++.+...++|+-++......+
T Consensus 358 a~~~~~~a~~l~~~l~~~----g~~~--~~~~fF~~~~v~~-----------~--~~~~~~~~~a~~~~~n~r~~~~~~~ 418 (954)
T PRK12566 358 AQRVHRLTAILAAGLEAK----GIKR--LNRHFFDTLTLEV-----------G--GAQAAIIESAEAARINLRILGRGRL 418 (954)
T ss_pred HHHHHHHHHHHHHHHHhc----CCcc--ccCCccceEEEEc-----------c--CCHHHHHHHHHHCCCeeEEeCCCeE
Confidence 455777777888888774 2111 1112333333321 0 0246788888889998887766666
Q ss_pred eee--cCCCHHHHHHHHHHHH
Q 015230 387 FTS--LAHSSDDIQHTITAAE 405 (411)
Q Consensus 387 ~~~--~~~t~~~i~~~i~~l~ 405 (411)
.++ -.+|.+|++.+++.+.
T Consensus 419 ~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 419 GVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred EEEeCCCCCHHHHHHHHHHhc
Confidence 664 5678999999999884
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.017 Score=49.52 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=61.7
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc---cCccccccCCCc
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTP 244 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g---~~~~~~~~~~~~ 244 (411)
|++.+++.+++..++..+. +.+..+.-.-..| +-+++|..+|..|+++-|+..+| |+ ... ..-+....|. .
T Consensus 142 dleav~~~iee~g~dcilc-i~sttscfapr~p--d~leaiaaica~~diphivnnay-glqsee~i~~iaa~~~~gr-i 216 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILC-IHSTTSCFAPRSP--DNLEAIAAICAAHDIPHIVNNAY-GLQSEECIHKIAAAAECGR-I 216 (432)
T ss_pred hHHHHHHHHHHhCCceEEE-EeecccccCCCCC--chHHHHHHHHHccCchhhhcccc-ccchHHHHHHHHHHhhhcc-H
Confidence 7889999998765553332 2222222222233 34999999999999999999999 34 111 1111111222 2
Q ss_pred c--hhhhhhhccCCcccccc---cccHHHHHHhcCCCCcccccC
Q 015230 245 D--LTTLGKIIGGGLPVGAY---GGRRDIMEMVAPAGPMYQAGT 283 (411)
Q Consensus 245 d--~~~~sK~~~~G~~~g~~---~~~~~~~~~~~~~~~~~~~~t 283 (411)
| +-++-|-|-- |+|.. ..+...++.+.+..+...+..
T Consensus 217 da~vqsldknf~v--pvggaiia~fk~n~iq~iak~ypgrasa~ 258 (432)
T KOG3843|consen 217 DAFVQSLDKNFMV--PVGGAIIAAFKDNFIQEIAKMYPGRASAS 258 (432)
T ss_pred HHHHHHhhhccee--ecchhHhhHhHHHHHHHHHHhCCCccccC
Confidence 3 2378887763 45433 236667777776555544433
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=51.22 Aligned_cols=72 Identities=8% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCC
Q 015230 56 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130 (411)
Q Consensus 56 ~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~ 130 (411)
.+++++.+ +.....+.+..++++++++++.+.++ .+++|++|+|+++|++.+++. ...+++.|++.++.|++
T Consensus 77 ~i~~~~~~-~a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~--l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 77 GTIDSFKD-IALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFC--IADPGDAFLVPTPYYAA 153 (153)
T ss_pred HHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHH--HcCCCCEEEEeCCCCCC
Confidence 33444544 22233455678999999999998754 478999999999999998874 23467889999988874
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.55 E-value=28 Score=34.75 Aligned_cols=42 Identities=5% Similarity=-0.087 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHH
Q 015230 364 FARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 405 (411)
Q Consensus 364 ~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~ 405 (411)
++++.+...++.|-++-.....+.++ -..+++|+|.++..+.
T Consensus 435 ~~~~l~rA~~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 435 AEEVLDRAAKRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred HHHHHHHHHhhcCceEEeecCceEEeecccccHHHHHHHHHHHc
Confidence 46777777777777776666666665 4668899999998875
|
|
| >KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.57 E-value=26 Score=31.31 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=66.9
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC--cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC--YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
...+|++|.|.+..++..|+.|....+.-.||+-++. +-|+ ..+..+.-. +.+...++
T Consensus 161 hsnEviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH-~~Ak~la~~-----------------giettVI~-- 220 (353)
T KOG1465|consen 161 HSNEVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGH-ELAKPLAQA-----------------GIETTVIP-- 220 (353)
T ss_pred ccCceEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccch-HhhHHHHHc-----------------CCeeEEec--
Confidence 5678999999999999999877554444556664432 2221 111111111 11122222
Q ss_pred CHHHHHHHHHcCCCcEEEEE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc
Q 015230 169 DVSALENLFENNKGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~ 236 (411)
|.. +-..+.+ .-+.|+ .-.+..+||...+.- ...++..|++|-+++|+= +|+ +..+.+.
T Consensus 221 daa-VfA~Msr---VnKVIigt~avl~NGgl~~~~G--~~~vAlaAk~h~vPv~Vl---Ap~yKLsPlyp 281 (353)
T KOG1465|consen 221 DAA-VFAMMSR---VNKVIIGTHAVLANGGLRAPSG--VHTVALAAKHHSVPVIVL---APMYKLSPLYP 281 (353)
T ss_pred cHH-HHHHhhh---cceEEEEeeeEecCCCeeccch--HHHHHHHHHhcCCcEEEe---cchhhcCCCCC
Confidence 433 3344442 223333 334677888777766 889999999999999864 344 4444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 411 | ||||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 1e-175 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 1e-174 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 1e-174 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 1e-174 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 1e-174 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 1e-174 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 1e-131 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 1e-118 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-117 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 1e-116 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 1e-104 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 7e-83 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 2e-45 | ||
| 2yku_A | 465 | Structural Determinants Of The Beta-Selectivity Of | 2e-44 | ||
| 2cy8_A | 453 | Crystal Structure Of D-Phenylglycine Aminotransfera | 8e-42 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 1e-31 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 1e-31 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 1e-31 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 4e-31 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 2e-30 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-24 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 5e-23 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 1e-22 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 1e-20 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 1e-20 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 5e-20 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 6e-20 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 2e-19 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 2e-19 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 3e-19 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 3e-19 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 3e-19 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 8e-19 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 1e-18 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 3e-18 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 3e-17 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 4e-17 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 2e-16 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 9e-16 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 2e-15 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-15 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 3e-15 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 3e-15 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 6e-15 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 6e-15 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 9e-15 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 1e-14 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 2e-14 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 2e-14 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 2e-14 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 2e-14 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 3e-14 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 3e-14 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 3e-14 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 5e-12 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 5e-12 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 4e-11 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 4e-10 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 8e-10 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 1e-09 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 1e-09 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 6e-09 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 5e-08 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 2e-07 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 6e-07 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 3e-06 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 4e-06 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 6e-06 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 2e-05 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 2e-05 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 1e-04 |
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
| >pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465 | Back alignment and structure |
|
| >pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 411 | |||
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 0.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 0.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 0.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 0.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 0.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 0.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 0.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 0.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 7e-67 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 5e-66 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 6e-66 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 7e-66 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 1e-63 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 1e-58 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 1e-56 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 1e-53 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 3e-53 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 7e-53 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 6e-52 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 2e-51 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 2e-51 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 3e-51 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 3e-47 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 7e-47 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 8e-44 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 2e-41 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 8e-41 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 9e-39 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 2e-38 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 2e-38 | |
| 3nui_A | 478 | Pyruvate transaminase; amino transferase, transfer | 1e-37 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 2e-37 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 6e-37 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 4e-36 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 4e-34 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 8e-34 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 1e-06 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 1e-06 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 1e-06 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 1e-06 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 1e-06 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 7e-05 |
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 790 bits (2044), Expect = 0.0
Identities = 299/411 (72%), Positives = 349/411 (84%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+ RA+TGR++
Sbjct: 77 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEV+TGFR+AYGG QE F
Sbjct: 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKF 256
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 786 bits (2032), Expect = 0.0
Identities = 221/412 (53%), Positives = 287/412 (69%), Gaps = 1/412 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVGSWGP I+GH + A
Sbjct: 18 IPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQA 77
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E +++G SFGAP +E +A++V VP+++MVR VNSGTEA M +RLAR +TGR++
Sbjct: 78 VIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDK 137
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +ND++++ FE
Sbjct: 138 IIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQY 197
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
E+A II+EPV GN I P P+FL +R + E GALLI DEVMTGFR+A GAQ+Y+
Sbjct: 198 PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYY 257
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
V PDLT LGKIIGGG+PVGA+GGRR++M +AP GP+YQAGTLSGNP+AM AG L
Sbjct: 258 HVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTE 317
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKS 359
+ + G YE L ++T L G+ A K+ + ++ GMFG FFT V ++D
Sbjct: 318 ISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNC 377
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ +F RF+ MLEEGVY APS FEAGF SLAHS++DIQ T+ AA + ++
Sbjct: 378 DVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQKTVNAARRCFAKL 429
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 785 bits (2031), Expect = 0.0
Identities = 196/412 (47%), Positives = 280/412 (67%), Gaps = 1/412 (0%)
Query: 1 MPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLA 59
+ GGVNSP R+FK+VGG PI + KG++ WD+DGN+YIDY+ ++GP I GHA +
Sbjct: 19 IVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITK 78
Query: 60 ALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119
A+ + G +G P LE A+M+ A+P+++ VRFVNSGTEA M +R+ARA+TGR
Sbjct: 79 AITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRT 138
Query: 120 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179
+I+KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T PFN+V L+ +
Sbjct: 139 KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDK 198
Query: 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239
E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV+T FR YGGAQ+
Sbjct: 199 WGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDL 258
Query: 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK 299
GVTPDLT LGK+IGGGLP+GAYGG+++IME VAP GP YQAGT++GNP +M +GI L+
Sbjct: 259 LGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLE 318
Query: 300 RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L++ G YE L+++ L +GI++ K I + G +FT + +++ A+ +
Sbjct: 319 VLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDT 378
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ F +F++ ML+EGV APS++EA F + H+ +DI++TI A + +
Sbjct: 379 DGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVGRAFAAL 430
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 783 bits (2025), Expect = 0.0
Identities = 238/411 (57%), Positives = 294/411 (71%), Gaps = 1/411 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SWGP I GHA+D+V+ A
Sbjct: 18 MPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEA 77
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA M LRLAR +TGR +
Sbjct: 78 LKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNK 137
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +ND+ +++ FE
Sbjct: 138 ILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQF 197
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEVMTGFR+AY Q Y+
Sbjct: 198 GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYY 257
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLT LGK+IGGGLPVGAYGG+ +IM VAP+GP+YQAGTLSGNPLAM AG TL +
Sbjct: 258 GVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ 317
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L P +Y + L G+ A +K G M G FFT+ PV N++ AK S
Sbjct: 318 LT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSN 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE + ++
Sbjct: 377 LQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKL 427
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 769 bits (1989), Expect = 0.0
Identities = 170/411 (41%), Positives = 243/411 (59%), Gaps = 2/411 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
PGGVNSPVRA +V P +G++++ +DG +D V ++GP I+GH +VL A
Sbjct: 23 FPGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEA 80
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA M +RLAR +TGR+
Sbjct: 81 VEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDL 140
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF+GCYHG D LV AGS A G+P S GVP+ TL P+NDV ALE +F
Sbjct: 141 ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEY 200
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV+TGFRL GAQ YF
Sbjct: 201 GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYF 260
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
+ D+ LGKIIGGG PVGA G R++M ++ P G ++ AGT + +P+ M AG+ TLK
Sbjct: 261 NIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKA 320
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+E Y + L + + + G + M F V N A+K++
Sbjct: 321 LEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKAD 380
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ + + ML GV+ APS EA FT L H + ++ + L+ +
Sbjct: 381 KKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLRSSLKTV 431
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 767 bits (1984), Expect = 0.0
Identities = 223/409 (54%), Positives = 281/409 (68%), Gaps = 2/409 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGV+SPVRAFK+VGG P +G+++WD DGN Y+DYV SWGP I+GHA +VLA
Sbjct: 17 IPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLAR 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M LRLAR +TGR
Sbjct: 77 VRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPY 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +ND L + +
Sbjct: 137 IVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRR 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMTGFRLA+GGA E
Sbjct: 197 GEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGATELL 255
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+ PDL TLGKI+GGGLP AY GRR+IME VAP GP+YQAGTLSGNPLAM AG+ TL+
Sbjct: 256 GLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLEL 315
Query: 301 LKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L+E PG Y YL + L G+ + K+ G + M FFTEGPV F+DA+++
Sbjct: 316 LEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRT 375
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 408
+T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K L
Sbjct: 376 DTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRKAL 424
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 716 bits (1850), Expect = 0.0
Identities = 130/419 (31%), Positives = 194/419 (46%), Gaps = 16/419 (3%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MP GV + RAF + +G H D+DGN Y+D+ G G ++GH +V AA
Sbjct: 25 MPDGVTADTRAFDPH---GLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAA 81
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E + G + A LE AE +++A PSI +RF SGTE + LR+ARAFTGR
Sbjct: 82 IAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRM 141
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I++FEG YHG D +G G P +PGV T TL +D+ + +F N+
Sbjct: 142 ILRFEGHYHGWHD--FSASGYNSHFDGQP-APGVLPETTANTLLIRPDDIEGMREVFANH 198
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IAA I EPV + G FL + ++ GAL I DEV++GFR+ G Q
Sbjct: 199 GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALL 258
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAGIHTL 298
V PDLT L K GGLP G GGR D+M +++ + GT +GNP+ A I +
Sbjct: 259 DVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF------FTEGPVYN 352
+ E +N + + + + G F T+
Sbjct: 319 DTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSIT 378
Query: 353 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ + + A ++ EGV + F S H + ++H +T ++VL ++
Sbjct: 379 RAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQHEREHVEHLVTTFDRVLDRL 435
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 697 bits (1802), Expect = 0.0
Identities = 130/413 (31%), Positives = 198/413 (47%), Gaps = 22/413 (5%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGG + + P+V GS D+DG+ Y++++G + + GH+ + AA
Sbjct: 68 MPGGNTRSILFHRPF---PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAA 124
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ + G + E + AE V PSI++VRF NSGTEA + L A A TGR+
Sbjct: 125 VERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKT 184
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
++ F+G YHG L+ SG P A Y + +NDV +L + +
Sbjct: 185 VLAFDGGYHGG----LLNFASG----------HAPTNAPYHVVLGVYNDVEGTADLLKRH 230
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+ AAI++EP++G G + + FL+ +R GALLIFDEVMT RL+ GGAQE
Sbjct: 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGAQEML 289
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTL 298
G++ DLTTLGK IGGG+ GA+GGRRD+ME PA G AGT + N L M+AG L
Sbjct: 290 GISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAAL 349
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 358
++ L+ + + + + + F+ P+ + D +
Sbjct: 350 TQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRA 409
Query: 359 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
++ F+ ML +G+Y AP A +A + A + +
Sbjct: 410 ADQQLKELFFFHMLRKGIYLAPRGMYALSLEIADA--GRDAFAEALADFIGEQ 460
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 7e-67
Identities = 98/315 (31%), Positives = 146/315 (46%), Gaps = 47/315 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 73
PI D + +WD++G EY+D+ G GH +V+AA+ +KK
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG- 130
LE L E++ VP + V +G+EA +++ARA T R I F G YHG
Sbjct: 84 EPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGR 141
Query: 131 ---------HADPFLVKAGSGVATLGLPDSPGV---PKGATYETLTAPFNDVSALENLFE 178
+P+ AG G V ++ + ++++ +F+
Sbjct: 142 THYTLALTGKVNPY--SAGMG------LMPGHVYRALYPCPLHGIS-EDDAIASIHRIFK 192
Query: 179 NNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 235
N+ +IAAI++EPV G GF A P F+ +R + E+G +LI DEV +G G
Sbjct: 193 NDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA-----GR 247
Query: 236 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
A E GV PDLTT K I GG P+ GR ++M+ VAP G GT +GNP+A
Sbjct: 248 TGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIA 304
Query: 291 MTAGIHTLKRLKEPG 305
A + LK ++
Sbjct: 305 CVAALEVLKVFEQEN 319
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 5e-66
Identities = 75/315 (23%), Positives = 128/315 (40%), Gaps = 43/315 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 85
Query: 79 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----- 130
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 145
Query: 131 ----------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
P G + P + + ++ L+ F+
Sbjct: 146 ASATYSAGRKGVGPAA----VGSFAIPAPFTYRPRFERNGAY-----DYLAELDYAFDLI 196
Query: 181 K----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 235
G +AA I EP++ + G I ++ A++R + G LLI DE TG G
Sbjct: 197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV-----GR 251
Query: 236 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
A + GVTPD+ TL K +G GLP+ A I E T +PL
Sbjct: 252 TGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLP 310
Query: 291 MTAGIHTLKRLKEPG 305
G+ L ++ G
Sbjct: 311 AAVGLRVLDVVQRDG 325
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 6e-66
Identities = 77/316 (24%), Positives = 125/316 (39%), Gaps = 41/316 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 73
P+ G + D+DGN ID +G++ +V+ A+ +
Sbjct: 44 PVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPY 103
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG- 130
+ + E + P + NSG+EA +++AR+ T + ++ F+ YHG
Sbjct: 104 EGYVA--VCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGR 161
Query: 131 ---------HADPFLVKAG---SGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLF 177
P+ G + L G T +
Sbjct: 162 TNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE--LAAKRAITVI 219
Query: 178 ENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 235
+ G +AA+++EP+ G GFI P FL + ++N + I DEV TGF
Sbjct: 220 DKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF-----A 274
Query: 236 ------AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 289
A E+ G+ PDL K I GGLP+ A GR +IM+ +G GT GNP+
Sbjct: 275 RTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSG---LGGTYGGNPI 331
Query: 290 AMTAGIHTLKRLKEPG 305
A A + T++ ++ G
Sbjct: 332 ACAAALATIETIESEG 347
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 7e-66
Identities = 86/315 (27%), Positives = 127/315 (40%), Gaps = 44/315 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 73
P+ G + D DGN +ID +G + V AA+ +
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
++ +AE++ + P + NSG EA +++AR TGR ++ F+ YHG
Sbjct: 107 EQYVQ--VAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGR 164
Query: 132 --------ADPFLVKAG-----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 178
A K+ V + G T E + E
Sbjct: 165 TNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA------ARRAISRIE 218
Query: 179 NNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 235
G +AAII+EP+ G GFI P P FL + ENG + I DEV TGF
Sbjct: 219 TQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-----AR 273
Query: 236 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
A E+ G+ PD+ T+ K I GG+P+ A GR ++M+ V G GT GNP+
Sbjct: 274 TGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGG---LGGTYGGNPVT 330
Query: 291 MTAGIHTLKRLKEPG 305
A + L ++E
Sbjct: 331 CAAAVAALGVMRELD 345
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 1e-63
Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 52/317 (16%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----SFGA 73
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ S
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
+ LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 86 APAVT--LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHG- 142
Query: 132 ADPFLVKAGSGVATLGL---------PDSPGV---PKGATYETLTAPFNDVSALENLFEN 179
V ++ + G+ P Y A+ L
Sbjct: 143 ---------CTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND-PTGDAILTLLTE 192
Query: 180 NK-----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234
G I A +EP+ + G I P FL I + +G L++ DEV G
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL----- 247
Query: 235 G------AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288
E+ G PD+ LGK +GGGLP+ A +I++ + TL GNP
Sbjct: 248 ARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAF----AMQTLHGNP 303
Query: 289 LAMTAGIHTLKRLKEPG 305
++ AG+ L+ +
Sbjct: 304 ISAAAGLAVLETIDRDD 320
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 1e-58
Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 35/323 (10%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ +
Sbjct: 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86
Query: 74 PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132
P E + + +P + V VNSGTEA L+ ARA TGR++ + + G
Sbjct: 87 PMRGE--FYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRT 144
Query: 133 DPFLVKAGSGVATLGLPDSPGV-------PKGATYETLTAPFNDVSALENLFENNKGEIA 185
+ +L + P + + P+NDV AL+ + A
Sbjct: 145 ----------MGSLSVTWEPKYREPFLPLVEPVEF----IPYNDVEALKRAVDEE---TA 187
Query: 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244
A+ILEPV G G P+FL A R IT+E GALLI DE+ TG R A E+FG+ P
Sbjct: 188 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVP 247
Query: 245 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304
D+ TL K +GGG+P+G R ++ + G T GNPLAM AG+ ++ L+
Sbjct: 248 DILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERT 304
Query: 305 GTYEYLNKITGELTQGIIDAGKK 327
+E ++ + +
Sbjct: 305 RLWERAAELGPWFMEKLRAIPSP 327
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 1e-56
Identities = 86/327 (26%), Positives = 141/327 (43%), Gaps = 46/327 (14%)
Query: 10 RAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK- 67
+ + P+V D +G ++D+DGN+Y+D+ G +G + +V+ E M+K
Sbjct: 16 TSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL 75
Query: 68 ----GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERI 121
F LE LA+ +++ P + F NSGTEA +++ + TGR+ I
Sbjct: 76 AHAAANDFYNIPQLE--LAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-TGRKYI 132
Query: 122 IKFEGCYHGH--------ADPFLVKAG-----SGVATLGLPDSPGVPKGATY-----ETL 163
I F G +HG A + ++ GV + P+ P E +
Sbjct: 133 IAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELV 192
Query: 164 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223
+ + E+A I EP+ G G++ P +F ++++ K+ G LL+ D
Sbjct: 193 NRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDD 252
Query: 224 EVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG 276
EV G G A E F PD+ TL K +GGG +P+GA R+D+
Sbjct: 253 EVQMGL-----GRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLDF-----K 302
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKE 303
P + T GN LA G + +K+
Sbjct: 303 PGMHSNTFGGNALACAIGSKVIDIVKD 329
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 1e-53
Identities = 84/336 (25%), Positives = 139/336 (41%), Gaps = 56/336 (16%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 74
PIV +G + D +GN Y+D + ++ GH +++ AL + + T +F +
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD 78
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 126
L E ++ + + EMV +N+G EA ++ AR + R II E
Sbjct: 79 QLGP--WYEK-VAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCED 135
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 181
+HG + + + + +G + + P+ D+ AL+ N
Sbjct: 136 NFHGRT----------MGAVSMSSNEEYKRG--FGPMLPGIIVIPYGDLEALKAAITPN- 182
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 236
AA ILEP+ G +G P FL + K+ L + DE+ TG A
Sbjct: 183 --TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFAC--- 237
Query: 237 QEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 291
++ VTPD+ LGK +GGG+ P+ RDI+ + P G T GNPLA
Sbjct: 238 -DWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-------GSHGSTFGGNPLAC 289
Query: 292 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327
I L+ L+E E ++ +L + +
Sbjct: 290 AVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP 325
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 3e-53
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 55/315 (17%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA 73
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +F
Sbjct: 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFE 125
L E E I+ + + V +N+G EA +LAR + + +I+
Sbjct: 118 NVLGE--YEEY-ITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAA 174
Query: 126 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENN 180
G + G ++ + P G + P+ND+ ALE ++
Sbjct: 175 GNFWGRT----------LSAISSSTDPTSYDG--FGPFMPGFDIIPYNDLPALERALQDP 222
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGG 235
+AA ++EP+ G +G + P P +L +R + + L I DE+ TG LA
Sbjct: 223 N--VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV-- 278
Query: 236 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 290
+Y V PD+ LGK + GGL PV A DIM + P G T GNPL
Sbjct: 279 --DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-------GEHGSTYGGNPLG 329
Query: 291 MTAGIHTLKRLKEPG 305
I L+ L+E
Sbjct: 330 CRVAIAALEVLEEEN 344
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 7e-53
Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 55/314 (17%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 74
P+V KG ++D++ Y D++ ++ GH +L A+ K T +F +
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 126
L ++ + + V +N+G EA +L R + +I+ +
Sbjct: 108 PLGI--CERY-LTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKN 164
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 181
+ G + + + + P++D+ ALE ++
Sbjct: 165 NFSGRT----------LGCISASTTKKCTSN--FGPFAPQFSKVPYDDLEALEEELKDP- 211
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 236
+ A I+EP+ G +G I P ++L + I K+ L + DEV TG L
Sbjct: 212 -NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV--- 267
Query: 237 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 291
++ V PD+ LGK + GG P+ A DIM ++ P G T GNPLA
Sbjct: 268 -HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAA 319
Query: 292 TAGIHTLKRLKEPG 305
+ + L L
Sbjct: 320 SICVEALNVLINEK 333
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 6e-52
Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 51/309 (16%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
P+ F KG +++D +G EY+D+V G +GHA ++ AL E ++K S +
Sbjct: 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYEN 69
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 128
P E LA ++ + V F NSGTE+ ++LAR + + + I FE +
Sbjct: 70 PWQEE--LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSF 127
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG +L P KG +E L A ND+ ++ L +
Sbjct: 128 HGRT----------YGSLSATGQPKFHKG--FEPLVPGFSYAKLNDIDSVYKLLDEE--- 172
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 238
A II+E + G G DFL+ ++ I KE LLI DEV TG R AY +
Sbjct: 173 TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY----Q 228
Query: 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 294
+F + PD+ L K +GGG+P+GA + + G T GNPLA AG
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGA-------ILAREEVAQSFTPGSHGSTFGGNPLACRAG 281
Query: 295 IHTLKRLKE 303
+ +++
Sbjct: 282 TVVVDEVEK 290
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 2e-51
Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 45/332 (13%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K S F
Sbjct: 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWN 81
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 128
+E LAE++ V F N+GTEA +++AR + + RI+ +
Sbjct: 82 RPQME--LAELLSKNTFG-GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSF 138
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG + +L P K +E L FN+V L +
Sbjct: 139 HGRT----------LGSLTATGQPKYQKP--FEPLVPGFEYFEFNNVEDLRRKMSED--- 183
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
+ A+ LEP+ G SG + +FL R++ E ALL+FDEV G R A + +GV
Sbjct: 184 VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV 243
Query: 243 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 298
PD+ T K +GGG+P+GA +V + + G T GNPLA AG+ +
Sbjct: 244 VPDVLTTAKGLGGGVPIGAV--------IVNERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 330
K L + G E + + L + + + ++
Sbjct: 296 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDV 327
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-51
Identities = 87/329 (26%), Positives = 137/329 (41%), Gaps = 43/329 (13%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
IV + +G +++D +Y+D+ G +G+ + A + + K TS +
Sbjct: 18 FDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYN 77
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 128
+ A+ + A E V F NSGTE+ G ++ AR + + I F+ +
Sbjct: 78 ENIAA--AAKNLAKASAL-ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSF 134
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG + L L + K ++ L A +ND+S++E L
Sbjct: 135 HGRT----------LGALSLTANEKYQKP--FKPLISGVKFAKYNDISSVEKLVNEK--- 179
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
AIILE V G G DF A+R++ E LLI DE+ G R A E+ +
Sbjct: 180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI 239
Query: 243 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 298
PD+ T K +G GL VGA+ + + A +AG T GNPL
Sbjct: 240 LPDIMTSAKALGCGLSVGAFVINQKV------ASNSLEAGDHGSTYGGNPLVCAGVNAVF 293
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKK 327
+ KE E +NK+T L Q + + +
Sbjct: 294 EIFKEEKILENVNKLTPYLEQSLDELINE 322
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 3e-51
Identities = 91/322 (28%), Positives = 137/322 (42%), Gaps = 45/322 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 74
+ KGS +WD G EYID+ G +GH ++ AL + TS F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNE 99
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 128
L L +I A + E V F+NSGTEA +LAR + + +II F +
Sbjct: 100 PALR--LGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAF 156
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG + + T+ + P G + PFND+ A++ + +++
Sbjct: 157 HGRS----------LFTVSVGGQPKYSDG--FGPKPADIIHVPFNDLHAVKAVMDDH--- 201
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
A+++EP+ G G A P+FL +R + E+ ALL+FDEV G R A ++GV
Sbjct: 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV 261
Query: 243 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 298
TPD+ T K +GGG PV A M + G T GNPLA
Sbjct: 262 TPDILTSAKALGGGFPVSA-------MLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAF 314
Query: 299 KRLKEPGTYEYLNKITGELTQG 320
+ P + ++ + Q
Sbjct: 315 DIINTPEVLQGIHTKRQQFVQH 336
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 3e-47
Identities = 65/325 (20%), Positives = 103/325 (31%), Gaps = 46/325 (14%)
Query: 19 PIVFDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 77
+ GS++ D I G Y+D + +G ++ + +
Sbjct: 36 VLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95
Query: 78 ENV-------LAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRE--------- 119
+V E + + FV G A L+ A + R
Sbjct: 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 120 ---RIIKFEGCYHG---------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-AP 166
+++ G +HG + P + A D+P + G +
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTI-TARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226
+ FE +IA + EP+ G G +P+F A+R + E ALLIFDEV
Sbjct: 215 AEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQ 274
Query: 227 TGF----RL-AYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 280
TG AY + V PD+ GK G+ G A P
Sbjct: 275 TGCGLTGTAWAY----QQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN---VFAVPSRL 327
Query: 281 AGTLSGNPLAMTAGIHTLKRLKEPG 305
T GN M L+ ++ G
Sbjct: 328 NSTWGGNLTDMVRARRILEVIEAEG 352
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 7e-47
Identities = 58/344 (16%), Positives = 107/344 (31%), Gaps = 71/344 (20%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 76
++ +G+++ D+DGN +D IG++ ++ + + T P L
Sbjct: 46 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105
Query: 77 -----LENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRER---------- 120
L E ++S P + + + G+ + + + +
Sbjct: 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165
Query: 121 ----------------IIKFEGCYHG---------HADPFLVKAGSGVATLGLPDSPGVP 155
I+ F G +HG H+ K + P +
Sbjct: 166 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI-HKIDIPSFDWPIAPFPRLK 224
Query: 156 KGATYETLTAPFNDVSALENL------FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209
+ LE + + K +A II+EP+ G DF +
Sbjct: 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 284
Query: 210 RRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVT--PDLTTLGKIIGGGLPVGA 261
R I++++G + DEV TG G A E++G+ D+ T K + G
Sbjct: 285 RDISRKHGCAFLVDEVQTGG-----GSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK 339
Query: 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
E P P T G+P + +K
Sbjct: 340 --------EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRED 375
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 8e-44
Identities = 77/348 (22%), Positives = 134/348 (38%), Gaps = 42/348 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAP 74
V +G + DI G Y+D + G+ ++ A + ++ S
Sbjct: 32 TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHE 91
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 128
++ LAE + + ++ F NSG+EA ++AR + R + + Y
Sbjct: 92 PAIK--LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGY 149
Query: 129 HG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 172
HG +PF SG + PD +P V
Sbjct: 150 HGNTMATMAATGQAQRRYQYEPFA----SGFLHVTPPDCYRMPGIERENIYDVEC--VKE 203
Query: 173 LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 230
++ + E IAA I+EP++ G + D++ A+ +++GALLI DEV+ GF R
Sbjct: 204 VDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263
Query: 231 LAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP--MYQAG-TLSG 286
+ V PD+ T+ K I LP+ A +R+I E G ++ T G
Sbjct: 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGG 323
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334
NP A + L+ ++ E ++ L + + + H + G
Sbjct: 324 NPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEE--IGEHPLVG 369
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-41
Identities = 93/450 (20%), Positives = 156/450 (34%), Gaps = 90/450 (20%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P++ +S G + DI+G EY D S + GH ++ A+ + + K +
Sbjct: 27 PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK---------IA 77
Query: 79 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRE 119
+ LAE +I P + V + +SG EA L++A + ++
Sbjct: 78 HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ 137
Query: 120 RIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETL 163
+ I + YHG H P + +P G E
Sbjct: 138 KFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM----FESYKAPIPYVYRSESGDPDECR 193
Query: 164 TAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIF 222
+ L L E + EIAA+ +E +V G SG I +L +R + L+I
Sbjct: 194 DQ---CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIV 250
Query: 223 DEVMTGF-RLAYGG---AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP 277
DEV TGF R G A E+ V PDL GK I GG LP+ DI + A
Sbjct: 251 DEVATGFGRT---GKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYK--AFYDD 305
Query: 278 MYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 331
T +GN L + L + E + + + +L + D
Sbjct: 306 YENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDL---HALP 362
Query: 332 ICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---------YFAPS 381
G G ++ ++ + M E G+ F P
Sbjct: 363 HVGDIRQLGFMCGAELVRSK-ETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLP- 420
Query: 382 QFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
LA +++++ + ++ + ++
Sbjct: 421 -------PLASTAEELSEMVAIMKQAIHEV 443
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 8e-41
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 51/324 (15%)
Query: 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK-----GT 69
V +G ++D G Y+D GS G + IGH +V + + G+
Sbjct: 10 KPYPVAVRGEGVFLYDDAGRRYLD--GSSGALVANIGHGRAEVGERMAAQAARLPFVHGS 67
Query: 70 SFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERII 122
F + L E A + V V+ G+EA ++LAR + GR ++I
Sbjct: 68 QFSSDVLEE--YAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI 125
Query: 123 KFEGCYHGHADPFLVKAGSGVATLGL---------------PDSPGVPKGATYETLTAPF 167
YHG + + +L P++ A
Sbjct: 126 TRVPSYHG----------ASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA-- 173
Query: 168 NDVSALENLFENNKGE-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEV 225
D L L E E +AA + EPVVG S +AP P + +R I E G + I DEV
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 226 MTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG 282
M+G R + + GVTPD+ LGK + G P+ + E V + G
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 283 -TLSGNPLAMTAGIHTLKRLKEPG 305
T +G+P+++ AG+ L ++
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVERED 317
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 9e-39
Identities = 77/369 (20%), Positives = 132/369 (35%), Gaps = 55/369 (14%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
+ + + +G +WD +G + ID +G+ ++ A+ K
Sbjct: 22 THMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAK 81
Query: 67 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 115
G + LA+M+I P + V F SG++A ++L +
Sbjct: 82 NLAYYHAYVGHGTEASIT--LAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVL 139
Query: 116 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGVPK-GATYE 161
+++II YHG SGV T L V A Y
Sbjct: 140 GRPEKKKIISRWRGYHG----------SGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYY 189
Query: 162 TLTAPFND---------VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRR 211
+ LE + E IAA I EP++G G + P + I+
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA 249
Query: 212 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 269
+ K+ LL+ DEV+TGF RL +++G+ PDL T+ K + P+ +
Sbjct: 250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVW 309
Query: 270 EMVA----PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325
+++ G + T S +P+ + AG+ L+ + E + + A
Sbjct: 310 QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKA- 368
Query: 326 KKAGHAICG 334
GH G
Sbjct: 369 -VGGHKNVG 376
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-38
Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 42/334 (12%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
+ + G V +G ++WD +GN+ ID + +G+ A M+
Sbjct: 23 TDTASLNQAG--ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQME 80
Query: 67 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 115
+ P ++E L+ ++ P + V + NSG+E+ ++R+ R +
Sbjct: 81 ELPFYNTFFKTTHPAVVE--LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQ 138
Query: 116 --TGRERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKG 157
++ +I YHG H D + G+A + P K
Sbjct: 139 GKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPI----PGMAHIEQPWWYKHGKD 194
Query: 158 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216
T + LE + +AA + EP+ G G I P + I RI ++
Sbjct: 195 MTPDEFGVVA--ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY 252
Query: 217 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 274
LL+ DEV+ GF R ++FG PDL T K + G LP+GA + + E +
Sbjct: 253 DVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIA 312
Query: 275 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
G T SG+P+ + L++ G +
Sbjct: 313 GGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 54/356 (15%)
Query: 8 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 67
P A ++ P + + +GS + D G + D + GH ++ A+ + +
Sbjct: 22 PYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST 81
Query: 68 ---GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 115
F P + LAE + P ++ V F +SG+E + +++ RA+
Sbjct: 82 LDYSPGFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139
Query: 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATL---GLP----------------DSPGVPK 156
+ ++I YHG +A G+ +
Sbjct: 140 ATKTKMIGRARGYHG----------VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189
Query: 157 GATYETLTAPFNDVSA--LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213
A + A L L E + IAA+ +EP+ G++G + P +L R I
Sbjct: 190 NAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREIC 249
Query: 214 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEM 271
++ LL+FDEV+TGF R + FGVTPDL + K + G +P+GA +I +
Sbjct: 250 NQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQT 309
Query: 272 VAPAGPMYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
A S +P+A AG+ L L++ + + ++ + +
Sbjct: 310 FMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL 365
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-37
Identities = 62/335 (18%), Positives = 117/335 (34%), Gaps = 36/335 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 72
+V +G ++ D++G Y+D + G ++ A ++
Sbjct: 44 TVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRM 103
Query: 73 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 125
+ + L+E ++ P V + NSG+EA ++++ + +I+
Sbjct: 104 SDQTVM--LSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRW 161
Query: 126 GCYHGHADPFLVKAGSGVA---TLGLP-------DSPGVPKGATYETLTAPFND--VSAL 173
YHG + + +G GLP P + F L
Sbjct: 162 NAYHG--VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL 219
Query: 174 ENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
E + + IA EPV+G G I P + AI I ++ +I DEV+ GF R
Sbjct: 220 EETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT 279
Query: 232 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA----PAGPMYQAGTLSG 286
+ TPD K + G P+GA ++ + + T SG
Sbjct: 280 GNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASG 339
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
+P+ + + + G E + ++ + +
Sbjct: 340 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERL 374
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 2e-37
Identities = 87/339 (25%), Positives = 138/339 (40%), Gaps = 53/339 (15%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
S +G + DG +D + SW AI G+ Q+ AA+ + +
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA---------MS 76
Query: 79 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF-----TG 117
+V L +++ P +E V +SG+ A V +++A +
Sbjct: 77 HVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVA---VEVAMKMALQYWQAKGEA 133
Query: 118 RERIIKFEGCYHGHADPFLVKAGSGVATL-------GLPDSPGVPKGATYETLTAPFNDV 170
R+R + F YHG D F + LP++ P + D+
Sbjct: 134 RQRFLTFRNGYHG--DTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191
Query: 171 SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF
Sbjct: 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF 251
Query: 230 -RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAGPMYQAG 282
R G A E+ + PD+ LGK + GG + + A R++ E AG
Sbjct: 252 GRT---GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 283 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
T GNPLA A +L L+ + + I +L + +
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL 347
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-37
Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 65/345 (18%)
Query: 19 PIVFDSVKGSH---MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 75
P+V + G+ + D E +D + SW AI GH + AL ++
Sbjct: 55 PVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV-------- 106
Query: 76 LLENV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF---- 115
+ +V LA++++ P ++ V F +SG+ + V ++A +
Sbjct: 107 -MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVS---VEVAAKMALQYWRGR 162
Query: 116 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF---- 167
G+ R++ + G YHG D F ++ P + + AP
Sbjct: 163 GLPGKRRLMTWRGGYHG--DTF------LAMSICDPHGGMHSLWTDVLAAQVFAPQVPRD 214
Query: 168 ---NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFD 223
+A E + GE+AA+++EPVV G G P +L+ +R I + LLIFD
Sbjct: 215 YDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD 274
Query: 224 EVMTGF-RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAG 276
E+ TGF R G A ++ GV+PD+ +GK + GG L + A D+ AG
Sbjct: 275 EIATGFGRT---GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAG 331
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
+ T NPLA + +++ L + ++ LT G+
Sbjct: 332 ALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL 376
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 4e-36
Identities = 74/359 (20%), Positives = 124/359 (34%), Gaps = 44/359 (12%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
S A G V +G + D +G E +D + IG+ D++ M+
Sbjct: 28 SANNALGEEG--TRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMR 85
Query: 67 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 115
+ + LA+ + P + V F G+EA +R+ R +
Sbjct: 86 ELPYYNTFFKTTHVPAIA--LAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNK 143
Query: 116 --TGRERIIKFEGCYHG--------------HAD-PFLVKAGSGVATLGLPDSPGVPKGA 158
+ II + YHG HA + V + P+
Sbjct: 144 GQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI----PDVHHINQPNWWAEGGDM 199
Query: 159 TYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 217
E LE +AA I EPV G G I + I+RI +
Sbjct: 200 DPEEFGLAR--ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYD 257
Query: 218 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 275
LLI DEV+ GF R + G+ P + T+ K + G P+G ++ ++
Sbjct: 258 ILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-K 316
Query: 276 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334
T SG+P+A + L+ L+E +++ + + +A H + G
Sbjct: 317 DEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEA--LTDHPLVG 373
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 4e-34
Identities = 78/488 (15%), Positives = 139/488 (28%), Gaps = 111/488 (22%)
Query: 19 PIVFDSVKGSHMWDID------GNEYIDYVGSWGPAIIGHADDQVLAA--------LGET 64
V DS G + ++ D SW LA G
Sbjct: 357 VTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV 416
Query: 65 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAF------- 115
M L+ AE+++ V R F ++G+ A L++A
Sbjct: 417 MFPE--NVYEPALK--CAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNF 472
Query: 116 --------TGRERIIKFEGCYHG----------------------------HADPFLVKA 139
++I G YHG DP V
Sbjct: 473 CEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFL 532
Query: 140 GSGVATLGLPD--SPGVPKGATYETLTAPFND-----------VSALENLFE-----NNK 181
+G + LP+ S P+ T+ + F+ + L +
Sbjct: 533 SNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQS 592
Query: 182 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239
+ A+I+EPV+ G G P F + + +IFDEV TGF RL E
Sbjct: 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTEL 652
Query: 240 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQAGTLSGNPLAMTAGI 295
G PD+ K++ GG +P+ + + + + + S + +
Sbjct: 653 LGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 712
Query: 296 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK--AGHAICGGY-ISGMFGFFFTEGPVYN 352
++ K+P T + L + + + + H+ + G +
Sbjct: 713 KAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADA-- 770
Query: 353 FEDAKKSETTKFARFYRGMLEEGV---------YFAPSQFEAGFTSLAHSSDDIQHTITA 403
+ + E+G+ Y S + + +T
Sbjct: 771 --SNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMC--------GPCTSPEICRRLLTK 820
Query: 404 AEKVLRQI 411
K L +
Sbjct: 821 LYKRLGEF 828
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-34
Identities = 66/343 (19%), Positives = 120/343 (34%), Gaps = 57/343 (16%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
+ V +G ++ DG ID A +G+ +++ A+
Sbjct: 27 QEMAKLGKSA--QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAM 84
Query: 67 K-----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----- 115
LAE + + P + + F G+ A LR + +
Sbjct: 85 VLPYASPWYMATSPAAR--LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLG 142
Query: 116 -TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGV--------- 154
++RII YHG S T +
Sbjct: 143 RPQKKRIIVRYDGYHG----------STALTAACTGRTGNWPNFDIAQDRISFLSSPNPR 192
Query: 155 -PKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 212
+ E V E+ E+ + IAA + EP++ + G I P + + I
Sbjct: 193 HAGNRSQEAFLDDL--VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250
Query: 213 TKENGALLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 269
+++ L I DEV+TGF R + +++ FGV PD+ T K + G +P+G ++
Sbjct: 251 CEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVL 310
Query: 270 EMVA---PAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 308
++ G + G T S P+A A + ++ ++ G +
Sbjct: 311 ARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVD 353
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 53/270 (19%), Positives = 87/270 (32%), Gaps = 60/270 (22%)
Query: 168 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 225
N++ L L + I + + G I L + I E A ++ D+
Sbjct: 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAH 212
Query: 226 MTGFRLAYG-GAQEYFGVTPD----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGP-- 277
G G G +FG+ D + T K + +G + G D+++ +
Sbjct: 213 SLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSV 269
Query: 278 MYQAGTLSGNPLAMTAGIHTLKRLK----EPGTYEYLNKITGELTQGIIDAG---KKAGH 330
M+ A A A TLK L+ EP E L K T ++D G
Sbjct: 270 MFSASM----TPASVAS--TLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATES 323
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---GF 387
I P++ +K T + + ++GV+ P A
Sbjct: 324 PIL---------------PIF-IRSNEK--TFWVTK---MLQDDGVFVNPVVSPAVPAEE 362
Query: 388 T------SLAHSSDDIQHTITAAEKVLRQI 411
+ H+ D I I KV +Q
Sbjct: 363 SLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 58/269 (21%), Positives = 81/269 (30%), Gaps = 57/269 (21%)
Query: 168 NDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 225
NDV+ L L + +I E V G P + I I +E GAL DEV
Sbjct: 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVH 217
Query: 226 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 276
G YG G E G+ + TL K G G Y +++ V
Sbjct: 218 AVGM---YGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYA 271
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI---TGELTQGIIDAG---KKAGH 330
P + T S P ++ LK + + L + G G
Sbjct: 272 PGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGS 330
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG- 386
I PV D T + + + GVY P F G
Sbjct: 331 HIV---------------PVV-IGDPVH--TKAVSD--MLLSDYGVYVQPINFPTVPRGT 370
Query: 387 ----FT-SLAHSSDDIQHTITAAEKVLRQ 410
FT S H I + A + + +
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 226
NDV+ L L + ++ E V G AP L I+++T+++ L+ D+
Sbjct: 153 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG 208
Query: 227 TGFRLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEM 271
TG G G+ V P+L T GK G GA + +
Sbjct: 209 TGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADY 254
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 58/270 (21%)
Query: 168 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 225
N V L+ L K ++LE V G IAP L + + K++GA+++ DE
Sbjct: 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH 233
Query: 226 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 276
GF +G G E G+ + T K +G VG + E V A
Sbjct: 234 SMGF---FGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT---VGGFVVSNHPKFEAVRLAC 287
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG-----KKAGH 330
Y S P + ++++L E L L G+ G +
Sbjct: 288 RPYIFTA-SLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---G- 386
AI V ED +++ A ++ +L+ G+Y ++ A G
Sbjct: 347 AIV---------------AVM-LEDQEQA-----AMMWQALLDGGLYVNMARPPATPAGT 385
Query: 387 ----FT-SLAHSSDDIQHTITAAEKVLRQI 411
+ H+ IQ + + R +
Sbjct: 386 FLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 40/263 (15%), Positives = 79/263 (30%), Gaps = 50/263 (19%)
Query: 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 226
N+ L L + + I I+++ + G IAP L + I+KE G L+ DE
Sbjct: 173 NNCDHLRMLIQRHGPGI--IVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHS 226
Query: 227 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 280
G G G G+T ++ +L K ++ V
Sbjct: 227 LGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY---RAGAIWCNNEVNRCVPFISYPAI 283
Query: 281 AGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI 337
+ + P TL+ ++ ++L+++ +L G+ G I
Sbjct: 284 FSS-TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQII---- 338
Query: 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG-----FT- 388
+ D + T K + + GV+ + +
Sbjct: 339 -----------GLE-TGDERN--TEKVRDY---LESNGVFGSVFCRPATSKNKNIIRLSL 381
Query: 389 SLAHSSDDIQHTITAAEKVLRQI 411
+ + + I I +
Sbjct: 382 NSDVNDEQIAKIIEVCSDAVNYG 404
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 56/270 (20%)
Query: 168 NDVSALENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIF 222
N + LE + + A L + + G IA L +I + + AL++
Sbjct: 157 NAMGDLEAKLKEADEKGARFKL--IATDGVFSMDGIIAD----LKSICDLADKYNALVMV 210
Query: 223 DEV-MTGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPA 275
D+ GF G G EY GV + TLGK +GG G Y G ++I+E +
Sbjct: 211 DDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA--SGGYTSGHKEIIEWLRNR 268
Query: 276 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY--EYLNKITGELTQGIIDAG---KKAGH 330
Y + P+ + + L+ LK G + L + + G+ G H
Sbjct: 269 SRPYLFSN-TVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNH 327
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAG- 386
I PV DA+ T A +L+EG+Y F+ G
Sbjct: 328 PII---------------PVM-LGDAQL--ATNMADH---LLQEGIYVVGFSYPVVPMGK 366
Query: 387 ----FT-SLAHSSDDIQHTITAAEKVLRQI 411
S H+ + I A +V +++
Sbjct: 367 ARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 6e-05
Identities = 52/363 (14%), Positives = 91/363 (25%), Gaps = 98/363 (26%)
Query: 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80
V D K I E ID++ + A L + K +E V
Sbjct: 38 VQDMPKS-----ILSKEEIDHI-----IMSKDAVSGTLRLFWTLLSKQEE-MVQKFVEEV 86
Query: 81 LA---EMVISAV------PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF--EGCYH 129
L + ++S + PS+ ++ A+ R + +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 130 GHADPFLV---KAGSG---VATLGLPDSP---GVPKGATYETL---TAPFNDVSALENLF 177
++ GSG VA + + L +P + L+ L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG---ALLIFDEV-----MTGF 229
+ S +RR+ K LL+ V F
Sbjct: 207 YQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 230 RL---------------AYGGAQEY--------FGVTPD--LTTLGKIIG---GGLPVGA 261
L A +TPD + L K + LP
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320
Query: 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
+ L+ NP + + I R T++ + + I
Sbjct: 321 ------------------EV--LTTNPRRL-SIIAESIR-DGLATWDNWKHVNCDKLTTI 358
Query: 322 IDA 324
I++
Sbjct: 359 IES 361
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 7e-05
Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 34/242 (14%)
Query: 77 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136
L++ E+ + + + + G A + + +++ K + F
Sbjct: 81 LKDKAKELF-----NYDYIIPAHQGRGAENILFPVLLK--YKQKEGKAKNPVFISNFHFD 133
Query: 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVV 193
A + K ET + D+ L+ + + I+ V
Sbjct: 134 TTAAHVELNGCKAINIVTEKAFDSET-YDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 192
Query: 194 GNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG--------VTP 244
NS P L + I K++G ++ D AY V
Sbjct: 193 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF-CENAYFIKARDPKYKNATIKEVIF 251
Query: 245 DLTTLGKII------GGGLPVGAYGGRRDIMEM-------VAPAGPMYQAGTLSGNPLAM 291
D+ + L +G RD E+ P G L+G +A
Sbjct: 252 DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAA 311
Query: 292 TA 293
Sbjct: 312 MV 313
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 411 | |||
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.98 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.98 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.98 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.98 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.98 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.98 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.96 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.97 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.97 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.97 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.97 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.97 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.97 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.97 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.97 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.97 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.97 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.97 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.97 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.96 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.96 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.96 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.96 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.96 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.96 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.96 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.95 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.95 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.95 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.95 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.95 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.95 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.94 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.94 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.94 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.94 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.94 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.94 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.94 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.94 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.94 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.94 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.94 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.93 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.93 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.93 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.93 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.93 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.93 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.93 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.93 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.93 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.93 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.93 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.93 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.92 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.92 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.92 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.92 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.91 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.91 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.91 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.91 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.91 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.91 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.91 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.9 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.9 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.9 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.9 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.9 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.9 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.9 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.89 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.89 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.89 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.89 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.89 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.89 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.89 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.89 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.89 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.88 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.88 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.88 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.88 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.88 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.88 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.88 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.88 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.88 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.88 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.87 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.87 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.87 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.87 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.86 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.85 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.85 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.84 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.84 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.84 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.84 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.84 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.84 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.83 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.83 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.83 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.83 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.83 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.82 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.82 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.82 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.82 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.81 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.81 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.81 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.81 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.8 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.8 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.8 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.79 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.79 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.78 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.77 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.75 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.75 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.7 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.67 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.66 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.62 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.6 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.59 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.57 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.55 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.53 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.21 |
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-68 Score=503.17 Aligned_cols=391 Identities=34% Similarity=0.563 Sum_probs=353.9
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|++|++|.|.++ |+++.+++|+++||.|||+|+||.++||++.+||+||+|++|+.++++++..+..+.....+
T Consensus 55 ~pgg~~~~~~~~~~~---P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~ 131 (454)
T 4ao9_A 55 MPGANSRSVLFYAPF---PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGR 131 (454)
T ss_dssp SGGGCSSGGGCCSSC---CCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHH
T ss_pred CCCCCCCCccccCCC---CccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHH
Confidence 799999999999865 99999999999999999999999999999999999999999999999998777777788899
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.+.+.+++.+++.|++||+||++.||++++.++++.+||.++++|||.+..+....+. .....
T Consensus 132 lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~--------------~~~~~ 197 (454)
T 4ao9_A 132 LARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP--------------TTVPF 197 (454)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT--------------TSCCS
T ss_pred HHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC--------------ccCCC
Confidence 9999999999999999999999999999999999999999999999999987654332211 11123
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
+...+|+||++.+++.++++.+++++||+||+++++|.+.++++|+++|+++|++||++||+|||++| |+|.+++.+++
T Consensus 198 ~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~~~a~e~~ 276 (454)
T 4ao9_A 198 DFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAPHGLANKL 276 (454)
T ss_dssp EEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGSTTCHHHHH
T ss_pred CcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCccccchhcc
Confidence 56778999999999999988789999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcC-CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
|+.||++|++|+++||+|+|++.+++++++.+.+ ....++++|+++||+++++++++|+.++++++.++++++++++++
T Consensus 277 gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~ 356 (454)
T 4ao9_A 277 GIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRA 356 (454)
T ss_dssp TCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 345678899999999999999999999888999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
+|+++..+++.+.++++.|+++.+++.+.+..++......+......+...|+++||++.|.+ .+.+++.+|++|||+
T Consensus 357 ~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~--~~~~s~~~T~~dId~ 434 (454)
T 4ao9_A 357 RLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG--FVVLSLPLTDADIDR 434 (454)
T ss_dssp HHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC--EEECCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC--CEEEeCCCCHHHHHH
Confidence 999999999999999999999999998777777666665666677888999999999999876 356678899999999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
++++|++++.++
T Consensus 435 ~l~al~~~l~~~ 446 (454)
T 4ao9_A 435 YVAAIGSFIGGH 446 (454)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-62 Score=461.65 Aligned_cols=384 Identities=24% Similarity=0.344 Sum_probs=322.0
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCC--CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP--SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~--~~ 92 (411)
.|+++.+++|+++||.|||+|+||.++++++++||+||++.+|+.++++++.+ +..+.+...+++++|.+..+ ..
T Consensus 46 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 125 (456)
T 4atq_A 46 VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHA 125 (456)
T ss_dssp CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSC
T ss_pred CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCC
Confidence 59999999999999999999999999999999999999999999999998542 33457778899999999997 47
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceee---cCC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLT---APF 167 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~---~~~ 167 (411)
++++|++||+||++.||++++.++++.+||.+.++|||.+..++...+... +.... +...++...+...... ...
T Consensus 126 ~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~ 205 (456)
T 4atq_A 126 KRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEI 205 (456)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTC
T ss_pred cEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcc
Confidence 899999999999999999999999999999999999999999988877642 22111 1111111000000000 111
Q ss_pred CCHHHHHHHHHc-----CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC
Q 015230 168 NDVSALENLFEN-----NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 241 (411)
Q Consensus 168 ~d~~~l~~~~~~-----~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~ 241 (411)
++.+.+++.++. .++++++||+||+++++|.+.++++|+++|+++|++||++||+|||++|| |+|.++++++++
T Consensus 206 ~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~g 285 (456)
T 4atq_A 206 TGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG 285 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccC
Confidence 234444443332 34689999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015230 242 VTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321 (411)
Q Consensus 242 ~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 321 (411)
+.||++|++|+++||+|+|.+.+++++++.+. +..+++||+++|++|++++++++.++++++.+++++..++++++|
T Consensus 286 v~PDivt~gK~lggg~P~~av~~~~~i~~~~~---~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L 362 (456)
T 4atq_A 286 VVPDIITMAKGIAGGLPLSAITGRADLLDAVH---PGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKL 362 (456)
T ss_dssp CCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhhhcccCcCCceeeEecHHHHhccc---ccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876 455888999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCC
Q 015230 322 IDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAH 392 (411)
Q Consensus 322 ~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~ 392 (411)
+++..++ +.+.++++.|+++.+++.++... .++...+.++.+.++++|+++.+.+. +.+++ |+++
T Consensus 363 ~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~------~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~i 436 (456)
T 4atq_A 363 RELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSK------EPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVI 436 (456)
T ss_dssp HHHHHHCC-----CEEEEEEETTEEEEEEBCTTSC------CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTC
T ss_pred HHHHHhcccccCCceEEeeecceEEEEEEecCCCC------CcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCC
Confidence 9998775 56788999999999999764322 25566778899999999999987653 44555 7899
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 015230 393 SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~ 410 (411)
|++++|+++++|+++++.
T Consensus 437 t~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 437 SDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=457.59 Aligned_cols=411 Identities=54% Similarity=0.964 Sum_probs=349.9
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|.|+++++|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~ 97 (429)
T 4e77_A 18 IPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVK 97 (429)
T ss_dssp SGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHH
T ss_pred cCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 68999999999988878899999999999999999999999999999999999999999999999987666778899999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++|||.+..++...+.+......+...+++.....
T Consensus 98 la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (429)
T 4e77_A 98 MAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAK 177 (429)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGT
T ss_pred HHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCC
Confidence 99999999988899999999999999999998888899999999999999988776655544333333444444444455
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||++|..+..+.+
T Consensus 178 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~ 257 (429)
T 4e77_A 178 HTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYY 257 (429)
T ss_dssp TEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHT
T ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhc
Confidence 67888999999999999876668999999999999999999999999999999999999999999999977777778889
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.......+++|++.++++++++.++++.++++++.++++++.+++++.
T Consensus 258 ~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 337 (429)
T 4e77_A 258 HVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATG 337 (429)
T ss_dssp TCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988754445677899999999999999999987789999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecC-CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
|+++...++....+++.|+++++++.+. ...++.....++.....++.+.|.++||++.+++.+.+++++.+|++++++
T Consensus 338 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~e~i~~ 417 (429)
T 4e77_A 338 LRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQK 417 (429)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCTTCCHHHHHH
T ss_pred HHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCEEEeccCCHHHHHH
Confidence 9998877788778889999999999754 244554445556667788999999999999999877888899999999999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
++++|+++++++
T Consensus 418 ~l~~l~~~l~~~ 429 (429)
T 4e77_A 418 TVNAARRCFAKL 429 (429)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-61 Score=459.68 Aligned_cols=410 Identities=48% Similarity=0.896 Sum_probs=354.5
Q ss_pred CCCCccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHH
Q 015230 1 MPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN 79 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~ 79 (411)
+|.|+++++|.|...+ ..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 98 (434)
T 3l44_A 19 IVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEV 98 (434)
T ss_dssp BGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHH
T ss_pred CCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHH
Confidence 5899999999998765 679999999999999999999999999999999999999999999999998766678889999
Q ss_pred HHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCC
Q 015230 80 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 159 (411)
Q Consensus 80 ~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 159 (411)
++++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++....
T Consensus 99 ~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 178 (434)
T 3l44_A 99 KFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIA 178 (434)
T ss_dssp HHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHH
T ss_pred HHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCC
Confidence 99999999998889999999999999999999888888999999999999999888877776554444444444433333
Q ss_pred CceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccc
Q 015230 160 YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239 (411)
Q Consensus 160 ~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~ 239 (411)
..+..++++|+++++++++++++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||++|..+..++
T Consensus 179 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~ 258 (434)
T 3l44_A 179 QEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDL 258 (434)
T ss_dssp TTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHH
T ss_pred CceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHH
Confidence 46788899999999999987556899999999999999999999999999999999999999999999997777777888
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.||++||||++++|+|+|++++++++++.+.+.....+++|++.++++++++.++++.+++++++++++++.+++++
T Consensus 259 ~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 338 (434)
T 3l44_A 259 LGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEK 338 (434)
T ss_dssp HTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998875545667789999999999999999988778999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
.|+++...++....+++.|+++++++.+....++.....++.....++.+.|.++||++.+++.+.+|+++.+|++++++
T Consensus 339 ~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~~~~t~e~i~~ 418 (434)
T 3l44_A 339 GILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEY 418 (434)
T ss_dssp HHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECCTTCCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEecccCHHHHHH
Confidence 99998877787778889999999999654443332223344556678999999999999999877889999999999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|++++++
T Consensus 419 ~l~~l~~~l~~ 429 (434)
T 3l44_A 419 TIEAVGRAFAA 429 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-61 Score=459.72 Aligned_cols=410 Identities=58% Similarity=0.983 Sum_probs=358.3
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++.+|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++..++++++...+
T Consensus 18 ~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~ 97 (429)
T 3k28_A 18 MPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENK 97 (429)
T ss_dssp SGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHH
T ss_pred cCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHH
Confidence 69999999999998777899999999999999999999999999999999999999999999999987666778899999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 98 l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 177 (429)
T 3k28_A 98 LAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAK 177 (429)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccC
Confidence 99999999988899999999999999999998888889999999999999998888777765554444444444332334
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||++|..+..+++
T Consensus 178 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~ 257 (429)
T 3k28_A 178 NTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYY 257 (429)
T ss_dssp TEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHh
Confidence 67788999999999999875568999999999999999999999999999999999999999999999866777777888
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.+.....+++|++.++++++++.++++.++ ++++++++++.+++++.
T Consensus 258 ~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~ 336 (429)
T 3k28_A 258 GVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAG 336 (429)
T ss_dssp TCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999899999999999999988754555677899999999999999998765 77889999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++...++....+++.|+++++++.+.+..++.....++.....++.+.|.++||++.+++...+|+++.+|+++++++
T Consensus 337 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~~~~t~e~i~~~ 416 (429)
T 3k28_A 337 LRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEAT 416 (429)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEECCCCHHHHHHH
Confidence 99988778888888999999999987655555554455566677889999999999999987778899999999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++|+++++++
T Consensus 417 l~~l~~~l~~~ 427 (429)
T 3k28_A 417 IAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-61 Score=459.17 Aligned_cols=389 Identities=17% Similarity=0.224 Sum_probs=320.9
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC----CCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+|+||.|||+|+||.+++|++++||+||++.+|+.++++++..+ +.+++...+++++|.+..| +.
T Consensus 49 ~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~ 128 (473)
T 4e3q_A 49 GTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS 128 (473)
T ss_dssp CCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS
T ss_pred CCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc
Confidence 499999999999999999999999999999999999999999999999985432 3357788899999999998 78
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
++|+|++||+||++.|||+++.+ +++.+||.+.++|||.+..++..++........+...+.........+...
T Consensus 129 ~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~ 208 (473)
T 4e3q_A 129 GRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYG 208 (473)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHS
T ss_pred cEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccc
Confidence 99999999999999999999865 457889999999999999999888864333222222222111111111111
Q ss_pred CC----------CHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 167 FN----------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 167 ~~----------d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
.. ..+++++.+.+ .++++++||+||+++++|++.++++|+++|+++|++||++||+|||++|| |+|.+
T Consensus 209 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~ 288 (473)
T 4e3q_A 209 EEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT 288 (473)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSS
T ss_pred cccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccch
Confidence 10 13455555554 45689999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC----CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
++.+++++.||++|++|+++|| +|+|.+++++++.+.+.. .....+++||++||++|+++++.++.++++++.++
T Consensus 289 fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~ 368 (473)
T 4e3q_A 289 WGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 368 (473)
T ss_dssp CHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred hHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHH
Confidence 9999999999999999999987 899999999999877642 23456889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
+++++.+++++|+++.. .+.+.++++.|+++.+++..+..... ...+......++.+.++++|+++.+.+ +.+++
T Consensus 369 ~~~~g~~l~~~L~~l~~-~~~v~~vRG~Gl~~gielv~~~~~~~--~~~~~~~~~~~~~~~~~~~Gll~~~~g-~~i~l~ 444 (473)
T 4e3q_A 369 VRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALEAVKDKASKT--PFDGNLSVSERIANTCTDLGLICRPLG-QSVVLC 444 (473)
T ss_dssp HHHHHHHHHHHHHHHTT-STTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCHHHHHHHHHHHTTEECEEET-TEEEEC
T ss_pred HHHHHHHHHHHHHHHhc-CCCeeEEeecceEEEEEEecCccccc--cccccHHHHHHHHHHHHHCCcEEEecC-CEEEEe
Confidence 99999999999999854 46788999999999999865322110 011233456789999999999999876 45554
Q ss_pred -ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 -SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+++|++++|+++++|++++++
T Consensus 445 PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 445 PPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998876
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-60 Score=453.99 Aligned_cols=411 Identities=73% Similarity=1.231 Sum_probs=361.4
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|.|+++.+|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 96 (427)
T 3fq8_A 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENV 96 (427)
T ss_dssp SGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHH
T ss_pred cCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCCCCHHHHH
Confidence 68999999999987777899999999999999999999999999999999999999999999999987666678999999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 97 la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (427)
T 3fq8_A 97 LAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTA 176 (427)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccC
Confidence 99999999987899999999999999999998888889999999999999988887776665544444545555433344
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|+++|+++++|.+.++++|+++|+++|++||++||+||+|+||++|..+..+.+
T Consensus 177 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~ 256 (427)
T 3fq8_A 177 NTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKF 256 (427)
T ss_dssp TEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHT
T ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhc
Confidence 57788999999999999987678999999999999999999999999999999999999999999999966777777888
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.+.....+++|+++++++++++.++++.++++++.++++++.+++++.
T Consensus 257 ~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
T 3fq8_A 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDG 336 (427)
T ss_dssp TCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765555677899999999999999999887789999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++...++....+++.|+++++++.+....++.....++.....++.+.|.++||++.+++.+.+++++.+|+++++++
T Consensus 337 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~r~~~~~~~t~e~i~~~ 416 (427)
T 3fq8_A 337 LLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDAT 416 (427)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCTTCCHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCCCEEeeCcCCHHHHHHH
Confidence 99988777777778889999999986654443333344555667789999999999999988777888999999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++|+++++++
T Consensus 417 l~~l~~~l~~~ 427 (427)
T 3fq8_A 417 LAAARTVMSAL 427 (427)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998864
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-56 Score=428.21 Aligned_cols=407 Identities=55% Similarity=0.946 Sum_probs=337.3
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++++|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 96 (424)
T 2e7u_A 17 IPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVA 96 (424)
T ss_dssp SGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHH
T ss_pred cCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 68999999999976666799999999999999999999999999999999999999999999999986556778889999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 97 l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 176 (424)
T 2e7u_A 97 LAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAK 176 (424)
T ss_dssp HHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCC
Confidence 99999999877899999999999999999988878888999999999999887766555443222111222232211113
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|++++++.+++.++++++|++||+++++|.+.++++++++|+++ ++||++||+||+|+||++|..+..+.+
T Consensus 177 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~ 255 (424)
T 2e7u_A 177 LTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELL 255 (424)
T ss_dssp TEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHH
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHh
Confidence 4667788899999999975434789999999999999999999999999999 999999999999999966766677788
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 319 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 319 (411)
++.||++|+||++++|+|+|++++++++++.+.......+++|++.++++++++.++++.+++ +++.++++++.+++++
T Consensus 256 ~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~ 335 (424)
T 2e7u_A 256 GLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEA 335 (424)
T ss_dssp TCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998887533345667899999999999999998877 8899999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
+|+++..+++....+++.|+++++++.+....++...+.++.....++.+.|.++||++.+++...+++++.+|++++++
T Consensus 336 ~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~~~i~~ 415 (424)
T 2e7u_A 336 GLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEK 415 (424)
T ss_dssp HHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSSCEECCTTCCHHHHHH
T ss_pred HHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCCceEeeccCCHHHHHH
Confidence 99998766676656778899999988532111111111223345678999999999999998766788899999999999
Q ss_pred HHHHHHHHH
Q 015230 400 TITAAEKVL 408 (411)
Q Consensus 400 ~i~~l~~~~ 408 (411)
++++|++++
T Consensus 416 ~l~~l~~~l 424 (424)
T 2e7u_A 416 TLEALRKAL 424 (424)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998763
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-56 Score=424.99 Aligned_cols=408 Identities=41% Similarity=0.736 Sum_probs=333.6
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|.|+++.+|.|. ...|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 23 ~~~~~~~~~~~~~--~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~ 100 (434)
T 2epj_A 23 FPGGVNSPVRAAV--KPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVL 100 (434)
T ss_dssp SGGGSSSGGGGGC--SSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHH
T ss_pred cCCCcCccccccc--CCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 5788999888872 13499999999999999999999999999998999999999999999999986556678888999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 101 l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 180 (434)
T 2epj_A 101 LAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVAR 180 (434)
T ss_dssp HHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccC
Confidence 99999998867899999999999999999988778888999999999999887766554432211111112222111112
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|++++++.+++.++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||++|..+..+.+
T Consensus 181 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~ 260 (434)
T 2epj_A 181 LTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYF 260 (434)
T ss_dssp TEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHH
T ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHh
Confidence 46667788999999999854347999999999999999999999999999999999999999999999866766677788
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.......+++|++.++++++++.++++.++++++.++++++.+++++.
T Consensus 261 ~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~ 340 (434)
T 2epj_A 261 NIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEA 340 (434)
T ss_dssp TCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998887643333466789999999999999999887788999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++..+++....+++.|+++++++.+.....+.....++.....++.+.|.++||++.+++...+++++.+|+++++++
T Consensus 341 L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~ 420 (434)
T 2epj_A 341 ASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIA 420 (434)
T ss_dssp HHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCTTCSHHHHHHH
T ss_pred HHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcEEEeccCCHHHHHHH
Confidence 99886666766667888999999985421111111111223456789999999999999987767888999999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 421 l~~l~~~l~~ 430 (434)
T 2epj_A 421 VEGLRSSLKT 430 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-61 Score=458.25 Aligned_cols=391 Identities=32% Similarity=0.553 Sum_probs=334.1
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++++|.|... |+++.+++|+++||.||++|+||.+++++.++||+||++++|+.++++++..+.++.+...+
T Consensus 68 ~~~g~~~~~~~~~~~---p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~ 144 (465)
T 2yky_A 68 MPGGNTRSILFHRPF---PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEAL 144 (465)
Confidence 699999999998754 99999999999999999999999999999999999999999999999986556678888899
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.|++.+++.++++|++||++|++.|+++++.++++++||+++++|||.+..++ +| +...+++.
T Consensus 145 Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg--------~~~~g~~~---- 210 (465)
T 2yky_A 145 FAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG--------HAPTNAPY---- 210 (465)
Confidence 99999999877789999999999999999998888899999999999999887766 22 11122211
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+ |++|.+++.+++
T Consensus 211 ~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~ 289 (465)
T 2yky_A 211 HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEML 289 (465)
Confidence 3556778899999999986556889999999999999999999999999999999999999999999 877777788888
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcC--CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
++.||++||||++++|+|+||+++++++++.+.+ ....++++|+++++++++++.++++.+++++++++++++.++++
T Consensus 290 gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~ 369 (465)
T 2yky_A 290 GISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFR 369 (465)
Confidence 9999999999999999999999999999998875 22345678999999999999999999887889999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQ 398 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~ 398 (411)
++|+++..+++....+++.|+++++++.+.+..++...+.++......+.+.|+++||++.|+++.. +++.+|+++++
T Consensus 370 ~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~--~s~~~t~edid 447 (465)
T 2yky_A 370 ANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA--LSLEIADAGRD 447 (465)
Confidence 9999987777776778899999999886422222222222233345788999999999999987443 77899999999
Q ss_pred HHHHHHHHHHHhC
Q 015230 399 HTITAAEKVLRQI 411 (411)
Q Consensus 399 ~~i~~l~~~~~~~ 411 (411)
+++++|+++++++
T Consensus 448 ~~l~~l~~~l~~~ 460 (465)
T 2yky_A 448 AFAEALADFIGEQ 460 (465)
Confidence 9999999988753
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=426.16 Aligned_cols=396 Identities=19% Similarity=0.261 Sum_probs=326.2
Q ss_pred ccCcccccccCCC-CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHH
Q 015230 5 VNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENV 80 (411)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~ 80 (411)
+|++...+..... .|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++.. +.++.+...+
T Consensus 22 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~ 101 (476)
T 3i5t_A 22 ILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAAR 101 (476)
T ss_dssp BCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHH
T ss_pred cccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHH
Confidence 4666555554432 58999999999999999999999999999999999999999999999998532 2467899999
Q ss_pred HHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCC
Q 015230 81 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSP 152 (411)
Q Consensus 81 l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 152 (411)
+++++++.++ +.++++|++||++|++.||++++.+ +++++||+++++|||.+..+..+++........ +...
T Consensus 102 la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
T 3i5t_A 102 LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQD 181 (476)
T ss_dssp HHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCT
T ss_pred HHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCC
Confidence 9999999998 7899999999999999999999877 788999999999999998888887765433221 1111
Q ss_pred CCCCCCCCceeecCC-----CC---------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC
Q 015230 153 GVPKGATYETLTAPF-----ND---------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 217 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~-----~d---------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~ 217 (411)
+ ......|+ ++ ++++++.+++. ++++++|++||+++++|.+.++++|+++|+++|++||
T Consensus 182 ~------~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~g 255 (476)
T 3i5t_A 182 R------ISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHD 255 (476)
T ss_dssp T------EEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred C------cEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 1 11112222 21 78899888753 2579999999999999999999999999999999999
Q ss_pred CEEEEecccccc-ccccCcccc-ccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHH
Q 015230 218 ALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLA 290 (411)
Q Consensus 218 ~~li~De~~~g~-~~g~~~~~~-~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~ 290 (411)
++||+||+|+|| ++|.+++.+ ++++.||++|+||++++| +|+|++++++++++.+.+. ....+++|+++++++
T Consensus 256 illI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a 335 (476)
T 3i5t_A 256 ILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVA 335 (476)
T ss_dssp CEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHH
T ss_pred CEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHH
Confidence 999999999999 999888888 899999999999999999 9999999999999988742 223567899999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH
Q 015230 291 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370 (411)
Q Consensus 291 ~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (411)
++++.++++.+++++++++++++.+++++.|+++. .++.+..+++.|+++++++.+...... ...+.......+.+.
T Consensus 336 ~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~ 412 (476)
T 3i5t_A 336 CAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRAD--GTAEDKAFTLKIDER 412 (476)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccc--cccchhHHHHHHHHH
Confidence 99999999998878999999999999999999653 567788899999999999864311000 000011235788999
Q ss_pred HHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 371 MLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 371 l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|.++||++.+.+ +.+|++ +++|++++++++++|++++++
T Consensus 413 l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 413 CFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp HHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999976 677874 899999999999999998865
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=417.42 Aligned_cols=378 Identities=23% Similarity=0.320 Sum_probs=320.1
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC--C
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--S 91 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~--~ 91 (411)
..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++..+ .++.+.+.++++++++.++ .
T Consensus 42 ~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 121 (451)
T 3oks_A 42 TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRG 121 (451)
T ss_dssp SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCC
Confidence 3689999999999999999999999999999999999999999999999886443 3578889999999999997 4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCC--
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN-- 168 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (411)
.++++||+||++|++.|+++++.++++++||+++++|||.+..+..+++.. .+...+.. ....+..++.+
T Consensus 122 ~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 194 (451)
T 3oks_A 122 DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGP-------FAPEIYRAPLSYP 194 (451)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCS-------CCSSEEEECCCCH
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCC-------CCCCcEEeCCCcc
Confidence 689999999999999999999888899999999999999999998887763 22211110 11123333333
Q ss_pred ----------------CHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 169 ----------------DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 169 ----------------d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
+++.+++.+++ .++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||
T Consensus 195 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 274 (451)
T 3oks_A 195 FRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA 274 (451)
T ss_dssp HHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 24444455553 23579999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 230 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
++|..+..+++++.||++||||++++|+|+||+++++++++.+.+ ..+++|++.++++++++.++++.+++++++++
T Consensus 275 ~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 351 (451)
T 3oks_A 275 RTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHV---SGLGGTYGGNPIACAAALATIETIESEGLVAR 351 (451)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCT---TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcC---CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Confidence 999888888999999999999999999999999999999888763 34677999999999999999998877899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--ccee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF 387 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~ 387 (411)
++++.+++++.|+++...++....+++.|+++++++.+... ..+......++.+.|.++||++.+++. +.+|
T Consensus 352 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR 425 (451)
T 3oks_A 352 AQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGT------TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVR 425 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTS------CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCcc------CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEE
Confidence 99999999999999988888888889999999999854111 124455678899999999999998764 4566
Q ss_pred e--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 388 T--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 388 ~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+ ++.+|++++++++++|++++++
T Consensus 426 i~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 426 FLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 5 6888999999999999999875
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=418.04 Aligned_cols=376 Identities=26% Similarity=0.360 Sum_probs=317.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC--C
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--S 91 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~--~ 91 (411)
..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++..+ .++.+...++++++++.++ .
T Consensus 45 ~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 124 (453)
T 4ffc_A 45 TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDH 124 (453)
T ss_dssp SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS
T ss_pred CCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCC
Confidence 3689999999999999999999999999999999999999999999999986443 3678889999999999997 4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCC--
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN-- 168 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (411)
.++++||+||+||++.|+++++.++++++||+++++|||.+..+..+++.. .+...+.. ....+..++.+
T Consensus 125 ~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 197 (453)
T 4ffc_A 125 DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGP-------FAPEVYRMPASYP 197 (453)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS-------CCSSEEEECCCCT
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCC-------CCCCcEEeCCCcc
Confidence 689999999999999999999888899999999999999999988887753 22211110 01122223322
Q ss_pred --C-------------HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc
Q 015230 169 --D-------------VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232 (411)
Q Consensus 169 --d-------------~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g 232 (411)
| .+.+++.+. ++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|| ++|
T Consensus 198 ~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g 275 (453)
T 4ffc_A 198 LRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG 275 (453)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccc
Confidence 2 233333332 3579999999999999999999999999999999999999999999999 999
Q ss_pred cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
.+++.+++++.||++||||++++|+|+||+++++++++.+.+ ..+++|++.++++++++.++++.++++++.+++++
T Consensus 276 ~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 352 (453)
T 4ffc_A 276 AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYA---GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARA 352 (453)
T ss_dssp SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCT---TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcc---cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888999999999999999999999999999999988764 34677999999999999999998877899999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT-- 388 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~-- 388 (411)
+.+++++.|+++...++....+++.|+++++++.+... ..++.....++.+.|.++||++.+++. +.+|+
T Consensus 353 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~ 426 (453)
T 4ffc_A 353 IEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGT------LEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLP 426 (453)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTS------CCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcc------cCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEEC
Confidence 99999999999988888888889999999999854211 124455678899999999999999764 45565
Q ss_pred ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++.+|++++++++++|++++++
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 427 PLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999875
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-55 Score=419.77 Aligned_cols=379 Identities=24% Similarity=0.342 Sum_probs=314.9
Q ss_pred CCCeEEEeecCcEEEec-CCC--EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC
Q 015230 17 GQPIVFDSVKGSHMWDI-DGN--EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~-~g~--~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~ 90 (411)
..|+++.+++|+++||. ||+ +|+||.++++++++||+||++++|+.+++++...+ .++.+...++++++++.++
T Consensus 53 ~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~ 132 (457)
T 3tfu_A 53 VSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITP 132 (457)
T ss_dssp SCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSS
T ss_pred CCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC
Confidence 35899999999999999 999 99999999999999999999999999999885332 3568889999999999998
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcC-CCCcccCC-CCCCCCCCCCCCc
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG-SGVATLGL-PDSPGVPKGATYE 161 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~ 161 (411)
+.++++|++||++|++.|+++++.+ +++++||+++++|||.+..+...++ .......+ +...+.... ..+
T Consensus 133 ~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p 211 (457)
T 3tfu_A 133 AGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFA-PQV 211 (457)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEE-CCC
T ss_pred CCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEe-cCC
Confidence 7889999999999999999998776 6788999999999999988877744 22111111 111111000 000
Q ss_pred eeecCCCCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 162 TLTAPFNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 162 ~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
.....++|+++++++++++++++++|++|| +++++|.+.++++++++|+++|++||++||+||+|+|| ++|.+++.++
T Consensus 212 ~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~ 291 (457)
T 3tfu_A 212 PRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADH 291 (457)
T ss_dssp CSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred CcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHh
Confidence 001122478999999986556899999999 99999999999999999999999999999999999999 9998888899
Q ss_pred cCCCcchhhhhhhccCC-cccccccccHHHHHHhc--CCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~ 316 (411)
+++.||++||||+++|| +|+|++++++++++.+. ......+++|+++++++++++.++++.++++++.++++++.++
T Consensus 292 ~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~ 371 (457)
T 3tfu_A 292 AGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAG 371 (457)
T ss_dssp HTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999988 69999999999999885 2233467789999999999999999998888999999999999
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCH
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSS 394 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~ 394 (411)
+++.|+++. .++....+++.|+++++++.+. .+..++.+.|+++||++.+.+ +.+|+ ++++|+
T Consensus 372 l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~-------------~~~~~~~~~l~~~Gv~v~~~~-~~lRi~p~~~~t~ 436 (457)
T 3tfu_A 372 LTAGLDTAR-ALPAVTDVRVCGAIGVIECDRP-------------VDLAVATPAALDRGVWLRPFR-NLVYAMPPYICTP 436 (457)
T ss_dssp HHHHHGGGG-GSTTEEEEEECSSCEEEEESSC-------------CCHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCH
T ss_pred HHHHHHHHh-cCCCeeeeecCCeEEEEEECCc-------------ccHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCH
Confidence 999998875 5667778889999999988532 113678999999999999875 56776 578899
Q ss_pred HHHHHHHHHHHHHHHhC
Q 015230 395 DDIQHTITAAEKVLRQI 411 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~~ 411 (411)
+++++++++|+++++++
T Consensus 437 eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 437 AEITQITSAMVEVARLV 453 (457)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=417.73 Aligned_cols=399 Identities=21% Similarity=0.264 Sum_probs=327.6
Q ss_pred ccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLA 82 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~ 82 (411)
+|+.++.|.+ ..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++.. ..++.+...+++
T Consensus 20 ~~~~~~~~~~--~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la 97 (452)
T 3n5m_A 20 VWHGMRPFSP--NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLA 97 (452)
T ss_dssp BCCTTSCSCG--GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHH
T ss_pred cccccccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHH
Confidence 3444444432 358999999999999999999999999999999999999999999999988532 346788899999
Q ss_pred HHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc---c---CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCC
Q 015230 83 EMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGV 154 (411)
Q Consensus 83 ~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~---~---~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 154 (411)
+++++.++ +.+ |+||+||++|++.|+++++.+ + ++++||+++++|||.+..+..+.+........ +...+.
T Consensus 98 ~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (452)
T 3n5m_A 98 EKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGF 176 (452)
T ss_dssp HHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCE
T ss_pred HHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCC
Confidence 99999987 445 999999999999999988755 5 78899999999999988887777664432211 211222
Q ss_pred CCCCCCceeecCCCC---------HHHHHHHHH-cCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 155 PKGATYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d---------~~~l~~~~~-~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
..........++++| ++++++.++ .+++++++|++||+ +| +|.+.++++++++|+++|++||++||+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~D 255 (452)
T 3n5m_A 177 LHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISD 255 (452)
T ss_dssp EEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred eEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 111122334455666 899999997 44457999999999 88 9999999999999999999999999999
Q ss_pred cccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC---CCCcccccCCCCCHHHHHHHHHHH
Q 015230 224 EVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMTAGIHTL 298 (411)
Q Consensus 224 e~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~~~a~~~~~l 298 (411)
|+|+|| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+.. .....+++|++.++++++++.+++
T Consensus 256 Ev~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 335 (452)
T 3n5m_A 256 EVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335 (452)
T ss_dssp CTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHH
T ss_pred cchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHH
Confidence 999999 999888888999999999999999999 999999999999999864 344557789999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe
Q 015230 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 378 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 378 (411)
+.++++++.++++++.+++++.|+++...++....+++.|+++++++.+...... .-+.....++.+.|.++||++
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~----~~~~~~~~~~~~~l~~~Gv~~ 411 (452)
T 3n5m_A 336 EIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKE----PIDNDKIASVVNACKEKGLII 411 (452)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTE----ECCHHHHHHHHHHHHHTTEEC
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccC----CCCHHHHHHHHHHHHHCCcEE
Confidence 9887789999999999999999999877788888889999999999854221110 001233467899999999999
Q ss_pred ccCC------Ccceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 379 APSQ------FEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 379 ~~~~------~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+++ .+.+|+ ++.+|++++++++++|+++++++
T Consensus 412 ~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 412 GRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp EECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred eecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9986 356787 58899999999999999998764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=417.80 Aligned_cols=380 Identities=20% Similarity=0.250 Sum_probs=317.0
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++. ...++.+...++++++++.++ +.
T Consensus 37 ~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~ 116 (472)
T 3hmu_A 37 GTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL 116 (472)
T ss_dssp CCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999999999999999999999999999999853 124568889999999999998 68
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
++|+|++||++|++.|+++++.+ +++++||+++++|||.+..+..+++.......+.... .+..++
T Consensus 117 ~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~--------~~~~v~ 188 (472)
T 3hmu_A 117 NHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIP--------DVHHIN 188 (472)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCS--------SEEEEC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCC--------CcEEeC
Confidence 89999999999999999998776 4678999999999999988888777543321111011 112222
Q ss_pred --C----C---C--------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc
Q 015230 167 --F----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228 (411)
Q Consensus 167 --~----~---d--------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g 228 (411)
+ + | ++++++.+++. ++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|
T Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~g 268 (472)
T 3hmu_A 189 QPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICG 268 (472)
T ss_dssp CCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccC
Confidence 1 2 2 78888888753 357999999999999999999999999999999999999999999999
Q ss_pred c-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 229 F-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 229 ~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+. .....+++|+++++++++++.++++.++++++
T Consensus 269 fgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~-~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~ 347 (472)
T 3hmu_A 269 FGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVALENLRILEEENI 347 (472)
T ss_dssp TTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHT-TSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcc-cCCccccCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 9 999888888999999999999999976 89999999999999883 23456778999999999999999998877899
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccc-hHHHHHHHHHHHHcCeEeccCCCc
Q 015230 307 YEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE-TTKFARFYRGMLEEGVYFAPSQFE 384 (411)
Q Consensus 307 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~~ 384 (411)
+++++ ++.+++++.|+++ ..++.+..+++.|+++++++........ ...+. ......+.+.|+++||++.+++ +
T Consensus 348 ~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~ 423 (472)
T 3hmu_A 348 LDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASRA--KFASEPGTIGYICRERCFANNLIMRHVG-D 423 (472)
T ss_dssp HHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGTC--CBSSCTTHHHHHHHHHHHHTTBCCEEET-T
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCccccc--cccchhHHHHHHHHHHHHHCCcEEEecC-C
Confidence 99999 9999999999776 3467788899999999999864211000 00011 2345788999999999999987 6
Q ss_pred ceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 385 AGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 385 ~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|+ ++++|++++++++++|++++++
T Consensus 424 ~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 424 RMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777 4899999999999999998865
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=412.02 Aligned_cols=392 Identities=18% Similarity=0.220 Sum_probs=320.8
Q ss_pred CCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCCCHHHHHHHHHHHhhCC
Q 015230 15 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~~~~~~~l~~~l~~~~~ 90 (411)
.+..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++. ...++.+...++++++++.++
T Consensus 30 ~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~ 109 (460)
T 3gju_A 30 GESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAP 109 (460)
T ss_dssp TCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSC
T ss_pred cCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCC
Confidence 3445699999999999999999999999999999999999999999999998842 235678889999999999987
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCce
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYET 162 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 162 (411)
+.++|+||+||++|++.++++++.+ +++++||+++++|||.+..+..+++...+...+ +...++.... ..
T Consensus 110 ~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p 187 (460)
T 3gju_A 110 KGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTE--AP 187 (460)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEEC--CC
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeC--CC
Confidence 7889999999999999999988765 578999999999999998888887764433221 1111110000 00
Q ss_pred eecCCCC------------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 163 LTAPFND------------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 163 ~~~~~~d------------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
..+.++| ++++++++++. ++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 267 (460)
T 3gju_A 188 YYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGF 267 (460)
T ss_dssp CGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred ccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 1112233 68899888742 3579999999999999999999999999999999999999999999999
Q ss_pred -ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHHHhc
Q 015230 230 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE 303 (411)
Q Consensus 230 -~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~~~~ 303 (411)
++|.++..+++++.||++||||++++| +|+|++++++++++.+... ....+++|++.++++++++.++++.+++
T Consensus 268 gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 347 (460)
T 3gju_A 268 GRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE 347 (460)
T ss_dssp TTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999888888899999999999999988 7999999999999888421 2445678999999999999999998877
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 383 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 383 (411)
+++.++++++.+++++.|++....++....+++.|+++++++........ ...+......++.+.|.++||++.+++.
T Consensus 348 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 425 (460)
T 3gju_A 348 MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRV--FFDASQKIGPQVATALAASGVIGRAMPQ 425 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCHHHHHHHHHHHTTEECEECSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccc--cccchHHHHHHHHHHHHHCCeEEecCCC
Confidence 89999999999999999988877778888899999999999864321100 0012223457889999999999998763
Q ss_pred -cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 384 -EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 -~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++ +++|++++++++++|++++++
T Consensus 426 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 426 GDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 567774 899999999999999998875
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-54 Score=415.37 Aligned_cols=402 Identities=23% Similarity=0.277 Sum_probs=308.1
Q ss_pred ccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVL 81 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l 81 (411)
+|++...++.++..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++.. ..++.+...++
T Consensus 13 ~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l 92 (448)
T 3dod_A 13 LWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQL 92 (448)
T ss_dssp BCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHH
T ss_pred ccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHH
Confidence 455554444444469999999999999999999999999999999999999999999999988532 34667889999
Q ss_pred HHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc---cC---CcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCC
Q 015230 82 AEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---TG---RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPG 153 (411)
Q Consensus 82 ~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~---~~---~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 153 (411)
++++++.++ +.++++||+||++|++.|+++++.+ ++ +++||+++++|||.+..+..+++.......+ +...+
T Consensus 93 a~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 172 (448)
T 3dod_A 93 AETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFE 172 (448)
T ss_dssp HHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------
T ss_pred HHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCC
Confidence 999999997 6799999999999999999998776 66 7999999999999988877776654322111 11111
Q ss_pred CCCCCCCc--------eeecCCCCHHHHHHHHHcCCCcEEEEEEcccC-CCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 154 VPKGATYE--------TLTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 154 ~~~~~~~~--------~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~-~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
+....... ...+.++|+++++++++++++++++|++||++ +++|.+.++++++++|+++|++||++||+||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE 252 (448)
T 3dod_A 173 SYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDE 252 (448)
T ss_dssp CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEec
Confidence 10000000 01112235899999998544689999999999 9999999999999999999999999999999
Q ss_pred ccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC----CCCcccccCCCCCHHHHHHHHHHH
Q 015230 225 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTL 298 (411)
Q Consensus 225 ~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~a~~~~~l 298 (411)
+|+|| ++|..++.+++++.||++||||++++| +|+|++++++++++.+.. .....+++|++.++++++++.+++
T Consensus 253 v~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 332 (448)
T 3dod_A 253 VATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENL 332 (448)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHH
T ss_pred cccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHH
Confidence 99999 889888888999999999999999999 599999999999998864 122456779999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe
Q 015230 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 378 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 378 (411)
+.+++++++++++++.+++++.|++ ...++....+++.|.++++++......... .......+.++.+.|+++||++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gv~~ 409 (448)
T 3dod_A 333 ALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEP--YPADRRIGYKVSLKMRELGMLT 409 (448)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBC--CCGGGCHHHHHHHHHHHTTEEC
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccc--cchhhHHHHHHHHHHHHCCcEE
Confidence 9887789999999999999999998 566777778888999999998643110000 0001112467899999999999
Q ss_pred ccCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 379 APSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 379 ~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.|++ +.+|+ ++.+|++++++++++|++++++
T Consensus 410 ~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 410 RPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp CEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9986 67787 7899999999999999998875
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-53 Score=409.00 Aligned_cols=397 Identities=20% Similarity=0.271 Sum_probs=315.2
Q ss_pred ccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCCCHHHH
Q 015230 5 VNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLEN 79 (411)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~~~~~~ 79 (411)
+|++...+.... ..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++. ...++.+...
T Consensus 18 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~ 97 (459)
T 4a6r_A 18 HLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVV 97 (459)
T ss_dssp ----------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHH
T ss_pred ccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHH
Confidence 455443333332 25899999999999999999999999999999999999999999999998843 1246788999
Q ss_pred HHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCC
Q 015230 80 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDS 151 (411)
Q Consensus 80 ~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~ 151 (411)
++++++++.++ +.++|+|++||++|++.++++++.+ +++++||+++++|||.+..+..+++.......+ +..
T Consensus 98 ~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 177 (459)
T 4a6r_A 98 ELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPI 177 (459)
T ss_dssp HHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSC
T ss_pred HHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCC
Confidence 99999999998 6899999999999999999988765 467899999999999998888887764433211 111
Q ss_pred CCCCCCCCCceeecCC----C---C--------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH
Q 015230 152 PGVPKGATYETLTAPF----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 215 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~----~---d--------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~ 215 (411)
.+ ...+..|+ + | ++++++.+++. ++++++|++||+++++|.+.++++++++|+++|++
T Consensus 178 ~~------~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 178 PG------MAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRK 251 (459)
T ss_dssp SS------EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred CC------CEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH
Confidence 11 11111121 1 2 78888888753 35789999999999999999999999999999999
Q ss_pred hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHH
Q 015230 216 NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 293 (411)
Q Consensus 216 ~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~ 293 (411)
||++||+||+|+|| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+.......+++|++.+++++++
T Consensus 252 ~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa 331 (459)
T 4a6r_A 252 YDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331 (459)
T ss_dssp TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHH
T ss_pred cCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHH
Confidence 99999999999999 999888888899999999999999976 8999999999998887632234566799999999999
Q ss_pred HHHHHHHHhcCChHHHHH-HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH
Q 015230 294 GIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 372 (411)
Q Consensus 294 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 372 (411)
+.++++.++++++.++++ ++.+++++.|.+....++....+++.|+++++++....... ....+.......+.+.|.
T Consensus 332 a~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 409 (459)
T 4a6r_A 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR--ELFPDFGEIGTLCRDIFF 409 (459)
T ss_dssp HHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTT--BCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCcccc--ccccchHHHHHHHHHHHH
Confidence 999999887789999999 99999999994444566778888999999999986432110 001123344678899999
Q ss_pred HcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 373 EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 373 ~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++||++.+++ +.+|+ ++.+|++++++++++|++++++
T Consensus 410 ~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 410 RNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp HTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999976 67777 4899999999999999998865
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-53 Score=406.64 Aligned_cols=401 Identities=32% Similarity=0.511 Sum_probs=305.4
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||.|+++.+|.|.. .|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++.+..++++.+++.+
T Consensus 25 ~~~~~~~~~~~~~~---~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~ 101 (453)
T 2cy8_A 25 MPDGVTADTRAFDP---HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVR 101 (453)
T ss_dssp SCCC------CCSS---CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCSSCHHHHH
T ss_pred cCCCCCccccccCC---CCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 68999999998864 489999999999999999999999999999999999999999999999886566788999999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++.+.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.... .+...+++.....
T Consensus 102 la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~---~~~~~g~~~~~~~ 178 (453)
T 2cy8_A 102 WAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFD---GQPAPGVLPETTA 178 (453)
T ss_dssp HHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC-------------------------------CGG
T ss_pred HHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccC---CCcCCCCCccccC
Confidence 9999999987789999999999999999998777788899999999999987766554432000 0111222211123
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|++++++.++++++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||+.|..+..+.+
T Consensus 179 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~ 258 (453)
T 2cy8_A 179 NTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALL 258 (453)
T ss_dssp GEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHh
Confidence 46677888999999999854357899999999888898899999999999999999999999999998865666667778
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCC--CCcccccCCCCCHHHHHHHHHHHHH-HhcCChHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKR-LKEPGTYEYLNKITGEL 317 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~a~~~~~l~~-~~~~~~~~~~~~~~~~~ 317 (411)
++.||++|+||++++|+|+|++++++++++.+... ....+++|++.++++++++.++++. + .+++.++++++.+++
T Consensus 259 ~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l 337 (453)
T 2cy8_A 259 DVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFA 337 (453)
T ss_dssp TCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred CCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 88999999999999999999999999998887641 2234566899999999999999998 7 678899999999999
Q ss_pred HHHHHHHHHhcCCceEEeeecceEEEEEec-----C-CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC
Q 015230 318 TQGIIDAGKKAGHAICGGYISGMFGFFFTE-----G-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA 391 (411)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~ 391 (411)
++.|+++..+++....+++.|.++++++.. . ....+.....++.....++.+.|.++||++.+++ .+++++.
T Consensus 338 ~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~~l~~~ 415 (453)
T 2cy8_A 338 REAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQ 415 (453)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTTT--EEECCTT
T ss_pred HHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCCC--CEEeecc
Confidence 999998866667666678889999998853 1 0000000001122345788999999999997653 4778899
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
+|++++++++++|++++++
T Consensus 416 ~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 416 HEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=392.72 Aligned_cols=377 Identities=22% Similarity=0.337 Sum_probs=314.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-CC-
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SI- 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~~- 92 (411)
.|+++.+++|++++|.+|++|+||.++++++++||+||++++++.+++++...+ .++.+.+.++++++++.++ +.
T Consensus 25 ~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 104 (439)
T 3dxv_A 25 FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGT 104 (439)
T ss_dssp SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTT
T ss_pred CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 588999999999999999999999999988899999999999999999886433 3568889999999999987 56
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC--cccCC-CCCCCCCCCCCCceeecCCC-
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV--ATLGL-PDSPGVPKGATYETLTAPFN- 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~- 168 (411)
++++||+||++|++.++++++.+.++++||+++++||+.+..+..+.+... ....+ +.. ..+..++++
T Consensus 105 ~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 176 (439)
T 3dxv_A 105 HKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLI--------LLPYPDPYRP 176 (439)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEE--------EECCCCSSSC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCC--------CCcEEcCCCc
Confidence 799999999999999999887778889999999999999988877766533 11110 000 011222222
Q ss_pred ---------CHHHHHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc
Q 015230 169 ---------DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 237 (411)
Q Consensus 169 ---------d~~~l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~ 237 (411)
|+++++++++ .+++++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+|| +.|..+..
T Consensus 177 ~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~ 256 (439)
T 3dxv_A 177 YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCF 256 (439)
T ss_dssp BTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGG
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHH
Confidence 6899999994 445689999999999999999999999999999999999999999999999 88887788
Q ss_pred cccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015230 238 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL 317 (411)
Q Consensus 238 ~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~ 317 (411)
+.+++.||++||||++++|+|+||+++++++++.+.. ..+..++ .++++++++.++++.++++++.++++++.+++
T Consensus 257 ~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~ 332 (439)
T 3dxv_A 257 EHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA---FAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLL 332 (439)
T ss_dssp GGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSS---SSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcC---CCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999888764 2356688 99999999999999887788999999999999
Q ss_pred HHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCCC
Q 015230 318 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHS 393 (411)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~t 393 (411)
++.|+++...++....+++.|+++++++.+.... ..+.......+.+.|.++||++.+++. +.+|+ ++.+|
T Consensus 333 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t 407 (439)
T 3dxv_A 333 RDGLSELAKRHPLIGDIRGRGLACGMELVCDRQS-----REPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTIT 407 (439)
T ss_dssp HHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCC
T ss_pred HHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCC
Confidence 9999999878888888889999999988543211 113445667899999999999999864 56777 67889
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 015230 394 SDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~~~ 411 (411)
++++++++++|+++++++
T Consensus 408 ~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 408 ETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp HHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998753
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=388.51 Aligned_cols=369 Identities=24% Similarity=0.282 Sum_probs=318.3
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCC
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIE 93 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~ 93 (411)
...|+++.+++|+++||.+|++|+||.++++++++||+||++++++.+++++... ..++.+..+++++++++.++ .+
T Consensus 16 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~ 94 (395)
T 3nx3_A 16 KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA-LE 94 (395)
T ss_dssp GSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT-CS
T ss_pred CCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-CC
Confidence 3568999999999999999999999999999999999999999999999987532 23568889999999999884 78
Q ss_pred EEEEeCChHHHHHHHHHHHHhc-----cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 94 MVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
+++|++||++|++.++++++.. .++++||+++++||+....+....+......... .....+..++++
T Consensus 95 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 167 (395)
T 3nx3_A 95 RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFK-------PLISGVKFAKYN 167 (395)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGC-------SCCSCEEEECTT
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccC-------CCCCCcEEeCCC
Confidence 9999999999999999987766 6789999999999999888777766533221111 012356778888
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|+++++++++ +++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+|| +.|..+..+.+++.||++
T Consensus 168 d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~ 244 (395)
T 3nx3_A 168 DISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM 244 (395)
T ss_dssp CHHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred CHHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE
Confidence 9999998886 578999999999999999999999999999999999999999999999 888888888889999999
Q ss_pred hhhhhccCCcccccccccHHH-HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 015230 248 TLGKIIGGGLPVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
|+||++++|+|+|++++++++ ++.+.+ ..++.+++.++++++++.++++.++++++.++++++.+++++.|+++..
T Consensus 245 t~sK~~~~G~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (395)
T 3nx3_A 245 TSAKALGCGLSVGAFVINQKVASNSLEA---GDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELIN 321 (395)
T ss_dssp EECGGGTTTSCCEEEEECHHHHHHHSCT---TCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEchhhhhhhcCC---cccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 888764 3456789999999999999999887788999999999999999999887
Q ss_pred hcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHH
Q 015230 327 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAA 404 (411)
Q Consensus 327 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l 404 (411)
.++....+++.|+++++++.+. ....++.+.|.++||++.+++.+.+|+ ++.+|++++++++++|
T Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l 388 (395)
T 3nx3_A 322 EFDFCKKRKGLGFMQGLSLDKS-------------VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKL 388 (395)
T ss_dssp HCTTEEEEEEETTEEEEEECTT-------------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred hCCCeEEEEeEEEEEEEEeCCc-------------chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 7787777888899999988532 123678899999999999987778887 5788999999999999
Q ss_pred HHHHHhC
Q 015230 405 EKVLRQI 411 (411)
Q Consensus 405 ~~~~~~~ 411 (411)
+++++++
T Consensus 389 ~~~l~~~ 395 (395)
T 3nx3_A 389 RKALKSF 395 (395)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9998764
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=425.50 Aligned_cols=401 Identities=19% Similarity=0.266 Sum_probs=313.7
Q ss_pred ccCcccccccCCC-CCeEEEeecCc--EEEecCCC----EEEeccCCccccccCCC-cHHHHHHHHHHHHcCCCC---CC
Q 015230 5 VNSPVRAFKSVGG-QPIVFDSVKGS--HMWDIDGN----EYIDYVGSWGPAIIGHA-DDQVLAALGETMKKGTSF---GA 73 (411)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~g~--~~~~~~g~----~~~d~~~~~~~~~~g~~-~~~v~~a~~~~l~~~~~~---~~ 73 (411)
+|++.-.++.+.. .|+++.+++|. ++||.+|+ +|+||.++||++++||+ ||++.+|+.+++++..+. ++
T Consensus 342 ~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~ 421 (831)
T 4a0g_A 342 FWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPEN 421 (831)
T ss_dssp BCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTE
T ss_pred ccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccccccc
Confidence 5777665654332 48899999995 89999999 99999999999999998 999999999999985332 35
Q ss_pred CCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHH-Hhcc--------------CCcEEEEEeCCcCCCchhhh
Q 015230 74 PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA-RAFT--------------GRERIIKFEGCYHGHADPFL 136 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~-~~~~--------------~~~~vi~~~~~~~~~~~~~~ 136 (411)
..+...+|+++|.+..| + .++++|++||++|++.|||++ +.+. ++.+||++.++|||.+.+++
T Consensus 422 ~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gal 501 (831)
T 4a0g_A 422 VYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAM 501 (831)
T ss_dssp ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeee
Confidence 67888999999999997 4 789999999999999999999 4442 35689999999999999999
Q ss_pred hhcCCCCcccC--CCCCCCCCCCCCC-------c--eeecC------------CCC------------------HHHHHH
Q 015230 137 VKAGSGVATLG--LPDSPGVPKGATY-------E--TLTAP------------FND------------------VSALEN 175 (411)
Q Consensus 137 ~~~g~~~~~~~--~~~~~~~~~~~~~-------~--~~~~~------------~~d------------------~~~l~~ 175 (411)
.+++...+... .+...+....... . .+.+| +++ .+.+++
T Consensus 502 s~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 581 (831)
T 4a0g_A 502 EAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSK 581 (831)
T ss_dssp HTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred eccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHH
Confidence 98876433320 1111110000000 0 01111 222 256777
Q ss_pred HHHc-----CCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhh
Q 015230 176 LFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248 (411)
Q Consensus 176 ~~~~-----~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~ 248 (411)
.+++ .++++++|++||+ ++.+|++.++++|+++|+++|++||++||+||+|+|| |+|.+++.+++++.||++|
T Consensus 582 ~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiit 661 (831)
T 4a0g_A 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIAC 661 (831)
T ss_dssp HC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEE
T ss_pred HHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEE
Confidence 7752 3578999999997 9999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhccCC-cccccccccHHHHHHhcCCC---CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----H
Q 015230 249 LGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ----G 320 (411)
Q Consensus 249 ~sK~~~~G-~~~g~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~----~ 320 (411)
+||+++|| +|+|++++++++++.+.... ...+++|++++|++|++++++++.+++++++++++++.+++++ .
T Consensus 662 lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~ 741 (831)
T 4a0g_A 662 FAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEE 741 (831)
T ss_dssp ECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHH
T ss_pred EecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 79999999999999887532 3457889999999999999999999887777777666665543 3
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQ 398 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~ 398 (411)
+.+...+++.+.++++.|+++++++...... ..+....+.++.+.|+++||++.|.+ +.+|+ ++.+|+++|+
T Consensus 742 l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gv~v~p~g-~~lrl~pp~~~t~e~id 815 (831)
T 4a0g_A 742 LVQQISSHSAVQRVVVIGTLFALELKADASN-----SGYASLYAKSLLIMLREDGIFTRPLG-NVIYLMCGPCTSPEICR 815 (831)
T ss_dssp HHHHHHHSTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHHHTTEECCCBT-TEEEEECCTTCCHHHHH
T ss_pred HHHHHhhCCCceeEeecccEEEEEEecCccc-----cccchHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHH
Confidence 4444456788899999999999999643110 00123456789999999999999976 56765 6899999999
Q ss_pred HHHHHHHHHHHhC
Q 015230 399 HTITAAEKVLRQI 411 (411)
Q Consensus 399 ~~i~~l~~~~~~~ 411 (411)
+++++|.++++++
T Consensus 816 ~~~~~l~~~l~~l 828 (831)
T 4a0g_A 816 RLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=389.96 Aligned_cols=383 Identities=22% Similarity=0.285 Sum_probs=299.8
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCC-C
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-S 91 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~-~ 91 (411)
.+.|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++.... ..++.+...++++++++.++ +
T Consensus 9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~ 88 (430)
T 3i4j_A 9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP 88 (430)
T ss_dssp SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999998899999999999999999988532 24668889999999999998 6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceee
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT 164 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 164 (411)
.++|+||+||++|++.++++++.+ ++++.||+++++||+....+..+.+........ +... ...+..
T Consensus 89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 162 (430)
T 3i4j_A 89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMR------PEAWPK 162 (430)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------C------GGGSCE
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCC------CCCceE
Confidence 889999999999999999988766 678899999999999887777666653322111 1000 002333
Q ss_pred cCCC--------CHHHHHHHHHcCC-CcEEEEEEcccCC-CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc
Q 015230 165 APFN--------DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233 (411)
Q Consensus 165 ~~~~--------d~~~l~~~~~~~~-~~~~~vi~~~~~~-~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~ 233 (411)
++++ |++++++.+++.. +++++|++||+++ ++|.+.++++++++|+++|++||++||+||+|+|| +.|.
T Consensus 163 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~ 242 (430)
T 3i4j_A 163 LPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS 242 (430)
T ss_dssp ECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred cCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc
Confidence 4443 4588999887532 5789999999999 99999999999999999999999999999999999 8888
Q ss_pred Ccccccc-CCCcchhhhhhhccCC-cccccccccHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 234 GGAQEYF-GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 234 ~~~~~~~-~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
.+..+++ ++.||++||||++++| +|+||+++++++++.+... ....++++++.++++++++.++++.++++++.+++
T Consensus 243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 322 (430)
T 3i4j_A 243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA 322 (430)
T ss_dssp SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888888 9999999999999999 9999999999999888642 12346678999999999999999988778899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhccc-c-hHHHHHHHHHHHHcCeEeccC-------
Q 015230 311 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-E-TTKFARFYRGMLEEGVYFAPS------- 381 (411)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~Gi~v~~~------- 381 (411)
+++.+++++.|+++...++....+++.|+++++++.+..... + . ...+.++.+.|.++||++.++
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 396 (430)
T 3i4j_A 323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQ------AFETPGIASRIGAAALKRGLITYPGSGAEPNG 396 (430)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------------CHHHHHHHHHHTTEECC---------
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccC------CCccHHHHHHHHHHHHhCCCEEEecccccCCC
Confidence 999999999999988778887888899999999885321100 0 0 112467899999999999987
Q ss_pred CCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 382 QFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 382 ~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+.+|+ ++.+|++++++++++|++++++
T Consensus 397 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 397 RGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp --CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2345676 4578999999999999999875
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=386.84 Aligned_cols=368 Identities=21% Similarity=0.330 Sum_probs=296.1
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+++.+++|+++||.+|++|+||.++++..++||+||++++++.++++++.. ..++.+...++++++++.+ +.+++
T Consensus 47 ~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 125 (433)
T 1z7d_A 47 IPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL-GYDKV 125 (433)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHH-TCSEE
T ss_pred CCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhc-CCCeE
Confidence 48889999999999999999999999888889999999999999999988532 2356777889999999888 57899
Q ss_pred EEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 96 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+|++||++|++.++++++.+ +++++||+++++||+.+..+....+........ . + ....+..+++
T Consensus 126 ~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~--~---p--~~~~v~~~~~ 198 (433)
T 1z7d_A 126 LMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF--G---P--FAPQFSKVPY 198 (433)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------------CEEEECT
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC--C---C--CCCCeEEeCC
Confidence 99999999999999987643 245899999999999887766655532211100 0 0 0124566788
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~ 246 (411)
+|+++++++++ .+++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..++.+.+++.||+
T Consensus 199 ~d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di 276 (433)
T 1z7d_A 199 DDLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDV 276 (433)
T ss_dssp TCHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred CCHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCE
Confidence 89999999995 2478999999999999998888888999999999999999999999999 88887777888999999
Q ss_pred hhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+|+||++++| +|+|++++++++++.+.. ..+..++++++++++++.++++.++++++.++++++.+++++.|+++.
T Consensus 277 ~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~ 353 (433)
T 1z7d_A 277 ILLGKALSGGHYPISAVLANDDIMLVIKP---GEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKREL 353 (433)
T ss_dssp EEECGGGGTTSSCCEEEEECHHHHTTCCT---TCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECccccCCCCCeEEEEECHHHHhhhcc---ccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999998887763 345678999999999999999988778899999999999999999875
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
..++....+++.|+++++++.... .+..++.+.|.++||++.+++.+.+|+ ++.+|++++++++++
T Consensus 354 ~~~~~~~~~~~~g~~~~i~~~~~~------------~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~ 421 (433)
T 1z7d_A 354 KDSKIVRDVRGKGLLCAIEFKNEL------------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEI 421 (433)
T ss_dssp TTCTTEEEEEEETTEEEEEECTTT------------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HhCCCeEEEEeeeeEEEEEEccCh------------hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHH
Confidence 556666677888999999885320 113678999999999999976667777 678899999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 422 l~~~l~~ 428 (433)
T 1z7d_A 422 IVKTVKF 428 (433)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=385.41 Aligned_cols=368 Identities=24% Similarity=0.363 Sum_probs=306.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+++.+++|+++||.+|++|+||.+++++.++||+||++++++.++++++..+ .++.+...++++++++.+ +.+++
T Consensus 58 ~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 136 (439)
T 2oat_A 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-NYHKV 136 (439)
T ss_dssp CSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHH-TCSEE
T ss_pred CCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhc-CCCEE
Confidence 588999999999999999999999999888899999999999999999885322 244567788999998887 57899
Q ss_pred EEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 96 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+|++||++|++.++++++.+ +++++||+++++||+.+..+....+.......+. + ....+..+++
T Consensus 137 ~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~-----p--~~~~v~~~~~ 209 (439)
T 2oat_A 137 LPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG-----P--FMPGFDIIPY 209 (439)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSC-----S--CCTTEEEECS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCC-----C--CCCCeEEeCC
Confidence 99999999999999987643 2447999999999999887766655322111110 0 0124567788
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~ 246 (411)
+|++++++.++. +++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..++.+.+++.||+
T Consensus 210 ~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di 287 (439)
T 2oat_A 210 NDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDI 287 (439)
T ss_dssp SCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred CCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcE
Confidence 899999999862 478999999999999998888889999999999999999999999999 88887778888999999
Q ss_pred hhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+|+||++++| +|+|++++++++++.+.. ..++.++++++++++++.++++.++++++.++++++.+++++.|+++
T Consensus 288 ~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l- 363 (439)
T 2oat_A 288 VLLGKALSGGLYPVSAVLCDDDIMLTIKP---GEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL- 363 (439)
T ss_dssp EEECGGGGTTSSCCEEEEECHHHHTTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS-
T ss_pred EEecccccCCCCCeEEEEECHHHHhccCC---CCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999 999999999998887763 34567899999999999999998877889999999999999999876
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
.++....+++.|+++++++.... .....++.+.|.++||++.+.+.+.+|+ ++.+|++++++++++
T Consensus 364 -~~~~~~~~~~~g~~~~v~l~~~~-----------~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~ 431 (439)
T 2oat_A 364 -PSDVVTAVRGKGLLNAIVIKETK-----------DWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEI 431 (439)
T ss_dssp -CTTTEEEEEEETTEEEEEECCCS-----------SCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHH
T ss_pred -cCCCcEEEEeeeeEEEEEEecCc-----------cHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHH
Confidence 24555567788999999885321 0113578899999999999976677887 678999999999999
Q ss_pred HHHHHHhC
Q 015230 404 AEKVLRQI 411 (411)
Q Consensus 404 l~~~~~~~ 411 (411)
|+++++++
T Consensus 432 l~~~l~~~ 439 (439)
T 2oat_A 432 INKTILSF 439 (439)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99998764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=382.41 Aligned_cols=387 Identities=23% Similarity=0.309 Sum_probs=309.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
.|+++.+++|+++||.+|++|+||.++.++.++||+||++++++.++++.+. ..+++.+...++++.+++.++ +.++
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~ 104 (433)
T 1zod_A 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDR 104 (433)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCE
T ss_pred CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence 4888999999999999999999999998888999999999999999998752 245677888999999999998 6899
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC------
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------ 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 168 (411)
|+||+||++|++.++++++.++++++||+++++||+....+....+........+...+.........+..+++
T Consensus 105 v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (433)
T 1zod_A 105 ALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYD 184 (433)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEEC
T ss_pred EEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhh
Confidence 99999999999999998766677789999999999998887766554211100011111100000001112333
Q ss_pred ---CHHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC
Q 015230 169 ---DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 243 (411)
Q Consensus 169 ---d~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~ 243 (411)
|++++++.+++. ++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+.+++.
T Consensus 185 ~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~ 264 (433)
T 1zod_A 185 YLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT 264 (433)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCC
Confidence 489999988752 2478999999998889988888999999999999999999999999999 88877777788889
Q ss_pred cchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015230 244 PDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 244 ~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (411)
||++|+||++++|+|+||+++++++++.+... ...+++|++.++++++++.++++.++++++.++++++.++++++|++
T Consensus 265 ~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~ 343 (433)
T 1zod_A 265 PDILTLSKTLGAGLPLAAIVTSAAIEERAHEL-GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLD 343 (433)
T ss_dssp CSEEEECHHHHTTSSCEEEEECHHHHHHHHHT-TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCCCeeEEEEhHHHHHhhccC-CCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887642 12344688999999999999999887788999999999999999998
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceee--ecCCCHHHH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFT--SLAHSSDDI 397 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~--~~~~t~~~i 397 (411)
+...++....+++.|+++++++.+.... ..+......++.+.|.++||++.+++. +.+|+ ++.+|++++
T Consensus 344 l~~~~~~~~~~~~~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i 418 (433)
T 1zod_A 344 LMERFDCIGDVRGRGLLLGVEIVKDRRT-----KEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEI 418 (433)
T ss_dssp HHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHH
T ss_pred HHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHH
Confidence 8666676667788899999988642100 001123356788999999999998752 56787 578999999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 419 ~~~l~~l~~~l~~ 431 (433)
T 1zod_A 419 DLGLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=378.33 Aligned_cols=369 Identities=25% Similarity=0.359 Sum_probs=305.8
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.+++++.... .++.+...++++++++.+ +.++
T Consensus 38 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~ 116 (420)
T 2pb2_A 38 PADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDAT-FAER 116 (420)
T ss_dssp -CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHS-SCSE
T ss_pred CCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCe
Confidence 3588999999999999999999999999999999999999999999999875322 356788999999999998 4789
Q ss_pred EEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
++|++||++|++.++++++.+ +++++||+++++||+....+....|.......+. + ....+..++++
T Consensus 117 v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~-----p--~~~~~~~~~~~ 189 (420)
T 2pb2_A 117 VLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFG-----P--KPADIIHVPFN 189 (420)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSS-----S--CCSCEEEECTT
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCC-----C--CCCCeEEecCC
Confidence 999999999999999987654 4567899999999999887777666532221110 0 01235667778
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++++++.++ +++++|+++|+++++|.+.++.+++++|+++|++||++||+||+|+|| ++|..+..+.+++.||++
T Consensus 190 d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 190 DLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp CHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE
Confidence 9999999886 478999999999888888888889999999999999999999999999 888776667788889999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
||||++++|+|+|++++++++++.+.. ..++.+++.++++++++.++++.++++++.++++++.+++++.|+++...
T Consensus 267 t~sK~l~~G~~iG~~~~~~~l~~~l~~---~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 267 TSAKALGGGFPVSAMLTTQEIASAFHV---GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECGGGGTTSCCEEEEECHHHHTTCC-------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEhHHHHHhhcC---CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888777653 23556889999999999999998877778899999999999999887555
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 405 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~ 405 (411)
++....+++.|+++++++.... .....++.+.|.++||++.+++.+.+|++ +.+|++++++++++|+
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~~-----------~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPKY-----------KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGGG-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEecceEEEEEECCCc-----------hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6766667788999999885310 01236788999999999999876678874 7899999999999999
Q ss_pred HHHHh
Q 015230 406 KVLRQ 410 (411)
Q Consensus 406 ~~~~~ 410 (411)
+++++
T Consensus 413 ~~l~~ 417 (420)
T 2pb2_A 413 QAVGK 417 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-50 Score=383.42 Aligned_cols=365 Identities=21% Similarity=0.288 Sum_probs=300.9
Q ss_pred EEeecCcEEEe-cCCCEEEeccCCccccccCCCcHHHH-H-HHHH---HHHcCCCC--CCCCHHHHHHHHHHHhhCC--C
Q 015230 22 FDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVL-A-ALGE---TMKKGTSF--GAPCLLENVLAEMVISAVP--S 91 (411)
Q Consensus 22 ~~~~~g~~~~~-~~g~~~~d~~~~~~~~~~g~~~~~v~-~-a~~~---~l~~~~~~--~~~~~~~~~l~~~l~~~~~--~ 91 (411)
+.+++|+++|| .+|++|+||.++++++++||+||+++ + |+.+ +++.+..+ .+..+...++++.+++.++ +
T Consensus 39 ~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~ 118 (449)
T 2cjg_A 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPA 118 (449)
T ss_dssp TTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTT
T ss_pred EeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence 35999999999 99999999999999999999999999 9 9999 88775433 3677888999999999885 6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccC------------CcEEEEEeCCcCCCchhhhhhcCC-CCcccCCCCCCCCCCCC
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGA 158 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~------------~~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 158 (411)
.++|+|++||++|++.|+++++.+++ +++||+++++||+.+..++.+.+. +.....+.. .
T Consensus 119 ~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-------~ 191 (449)
T 2cjg_A 119 LPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPK-------F 191 (449)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCC-------C
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCC-------C
Confidence 88999999999999999998765543 789999999999998887777664 111111110 0
Q ss_pred CCceeecCCCC---------------HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 159 TYETLTAPFND---------------VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 159 ~~~~~~~~~~d---------------~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
...+..++++| ++++++.++++.+++++|++||+++++|.+.++++++++|+++|++||++||+|
T Consensus 192 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D 271 (449)
T 2cjg_A 192 DWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD 271 (449)
T ss_dssp CCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 12344455544 344888887554689999999999999999999999999999999999999999
Q ss_pred cccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC--CCCcccccCCCCCHHHHHHHHHHHHH
Q 015230 224 EVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKR 300 (411)
Q Consensus 224 e~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~ 300 (411)
|+|+|| ++|.++..+.+++.||++|+||++ |+||+++++++++.+.+ .....+++|+++++++++++.++++.
T Consensus 272 Ev~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~ 347 (449)
T 2cjg_A 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEV 347 (449)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred ccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 999999 888877777888999999999999 79999999888776432 11234667899999999999999998
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHhcCC-ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
++++++.++++++.++++++|+++...++. ...+++.|+++++++.. .....++.+.|.++||++.
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~v~ 414 (449)
T 2cjg_A 348 IEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT-------------TADRDELIRQLWQRAVIVL 414 (449)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECE
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC-------------hHHHHHHHHHHHHCCeEEe
Confidence 877788999999999999999998666775 66778889999987732 2234678999999999999
Q ss_pred cCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 380 PSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++.+.+|+ ++.+|++++++++++|++++++
T Consensus 415 ~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 415 PAGADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 987677887 6789999999999999999875
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=376.78 Aligned_cols=384 Identities=21% Similarity=0.288 Sum_probs=303.6
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~-~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.+|++|+||.++++++++||.||++++++.+++++.. .+ .+..+...++++.+++.++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 4889999999999999999999999999999999999999999999998742 22 5678888999999999987 788
Q ss_pred EEEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecC
Q 015230 94 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 166 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (411)
+|+||+||++|++.++++++.+. ++++||+++++||+....+....+.......+ +...+.........+..+
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 191 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNA 191 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGT
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCc
Confidence 99999999999999999876543 67899999999999887777666532211100 000010000000000000
Q ss_pred C--CC--------HHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 167 F--ND--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 167 ~--~d--------~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
+ -| ++++++.+++.. +++++|++||+++++|.+.++++++++|+++|++||++||+||+|++| ++|..
T Consensus 192 ~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 192 YSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp TCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 0 04 899999987532 478999999999889999999999999999999999999999999999 88876
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCC------CcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG------PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~------~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
+..+.+++.||++|+||++++| +|+|++++++++++.+.... ...++.|++.++++++++.++++.++++++.
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~ 351 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLV 351 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHH
Confidence 6777888899999999999988 99999999999988886431 1235568899999999999999988777899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCccee
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 387 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~ 387 (411)
++++++.++++++|+++ ..++....+++.|+++++++..... ....+...+.+.|.++||++.+++ +.+|
T Consensus 352 ~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~--------~~~~~~~~~~~~l~~~Gv~v~~~g-~~iR 421 (449)
T 3a8u_X 352 QSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDG--------DAIVRPFEAGMALWKAGFYVRFGG-DTLQ 421 (449)
T ss_dssp HHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTT--------BSSHHHHHHHHHHHHHTEECEEET-TEEE
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcc--------cccccHHHHHHHHHHCCcEEecCC-CEEE
Confidence 99999999999999874 3355555667889999999853210 000012368888899999999976 6788
Q ss_pred ee--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 388 TS--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 388 ~~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++ +.+|++++++++++|+++++++
T Consensus 422 is~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 422 FGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 85 7899999999999999998764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=363.05 Aligned_cols=371 Identities=25% Similarity=0.362 Sum_probs=314.6
Q ss_pred CCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCC
Q 015230 15 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSI 92 (411)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~ 92 (411)
.++.|+++.+++|+++||.+|++|+||.++++++++||+||++.+++.++++.... ..++.+...++++++++.+ +.
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~ 96 (406)
T 4adb_A 18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FA 96 (406)
T ss_dssp CCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-SC
T ss_pred cCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-CC
Confidence 35568999999999999999999999999999999999999999999999987432 3456788899999999998 56
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
+++++|+||++|++.++++++.+ +++++|++.+++||+....+....+.......+.. ....+..++
T Consensus 97 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 169 (406)
T 4adb_A 97 DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP-------LPADIRHAA 169 (406)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS-------CCSSEEEEC
T ss_pred CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCC-------CCCCceEeC
Confidence 69999999999999999976554 66789999999999998888777765433211110 123566778
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
++|++++++.++ +++++|+++|+|+++|++.++.+.+++|.++|++||++||+||+|+|| +.|..+..+.++..+|
T Consensus 170 ~~d~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (406)
T 4adb_A 170 YNDINSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246 (406)
T ss_dssp TTCHHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred CCcHHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC
Confidence 889999998876 578999999999999988878888999999999999999999999999 8887777778888999
Q ss_pred hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 246 ~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
++||||++++|+|+||+++++++++.+.. .....+++.++++++++.++++.++.++++++++++.+++++.|+++.
T Consensus 247 ~~t~sK~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 323 (406)
T 4adb_A 247 LLTTAKALGGGFPVGALLATEECARVMTV---GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTIN 323 (406)
T ss_dssp EEEECGGGGTTSCCEEEEECHHHHHTCCT---TSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCCCCeEEEEEcHHHHhhhcc---CCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988774 335568899999999999999988767888999999999999999987
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
..++.....++.|+++++++.... .....++.+.|.++||.+.+++.+.+|+ ++.+|++++++++++
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~ 392 (406)
T 4adb_A 324 HRYGLFSEVRGLGLLIGCVLNADY-----------AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR 392 (406)
T ss_dssp HHHCCEEEEEEETTEEEEEECTTT-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HhCCCceEEEEEEEEEEEEEeCCc-----------HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 767777777888999999985421 0123688999999999999988778888 788999999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 393 l~~~l~~ 399 (406)
T 4adb_A 393 FAAACEH 399 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=364.58 Aligned_cols=372 Identities=24% Similarity=0.332 Sum_probs=296.7
Q ss_pred CCeE-EEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--C-CCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIV-FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~-~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~-~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|++ +.+++|+++||.+|+.|+||.++.+++++||.+|++++++.++++.... + .++.+...++++.+++.++ +.
T Consensus 24 ~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 103 (429)
T 1s0a_A 24 LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL 103 (429)
T ss_dssp CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC
T ss_pred CCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 4555 8999999999999999999999999899999999999999999987432 1 4567778999999999998 78
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccC-----CcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceee-
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLT- 164 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~- 164 (411)
++|+||+||++|++.++++++.+.+ +++||+++++||+....+....+... ....+ +...+. ..+.
T Consensus 104 ~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 177 (429)
T 1s0a_A 104 ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN------LFAPA 177 (429)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC------EEECC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCc------eEeCC
Confidence 9999999999999999997654433 78999999999998776665554321 00000 000000 0111
Q ss_pred --------cCCCCHHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 165 --------APFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 165 --------~~~~d~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
..+.|++++++.++++++++++|+++|+ +|++|.+.++++++++|.++|++||++||+||+|+|| +.|..
T Consensus 178 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~ 257 (429)
T 1s0a_A 178 PQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKL 257 (429)
T ss_dssp CCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchH
Confidence 1124789999998854457899999999 8889998988999999999999999999999999999 77776
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC--CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
+..+..++.||++|+||++++| +|+||+++++++++.+... ....+..+++.++++++++.++++.++++++.++++
T Consensus 258 ~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~ 337 (429)
T 1s0a_A 258 FACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVA 337 (429)
T ss_dssp SGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6677778889999999999999 9999999999998888642 111245688999999999999999887777888999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS-- 389 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~-- 389 (411)
++.++++++|+++.. ++....+++.|+++++++.+. .+...+.+.|.++||++.+.+ +.+|++
T Consensus 338 ~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-------------~~~~~l~~~l~~~Gi~v~~~~-~~iRis~~ 402 (429)
T 1s0a_A 338 DIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-------------VNMAALQKFFVEQGVWIRPFG-KLIYLMPP 402 (429)
T ss_dssp HHHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-------------BCHHHHHHHHHHTTEECCCBT-TEEEECCC
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-------------ccHHHHHHHHHHCCCEEeccC-CEEEEECC
Confidence 999999999987532 454445667789999988431 112578888999999999864 567875
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 015230 390 LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++++++++++|++++++
T Consensus 403 ~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 403 YIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp TTCCHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 789999999999999998754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=369.85 Aligned_cols=371 Identities=18% Similarity=0.263 Sum_probs=291.9
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHc-----CCCCC--CCCHHHHHHHHHHHhhCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFG--APCLLENVLAEMVISAVP 90 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-----~~~~~--~~~~~~~~l~~~l~~~~~ 90 (411)
.++.+.+++|+++||.||++|+||.+++++.++||+||++++|+.+++.. ...++ ...++.+++++.+.+..+
T Consensus 45 ~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~ 124 (472)
T 1ohv_A 45 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAP 124 (472)
T ss_dssp CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCC
T ss_pred CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCC
Confidence 36678999999999999999999999999999999999999999998643 11222 136677888888888776
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhc-----------c-------------C--CcEEEEEeCCcCCCchhhhhhcCCCC
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAF-----------T-------------G--RERIIKFEGCYHGHADPFLVKAGSGV 143 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~-----------~-------------~--~~~vi~~~~~~~~~~~~~~~~~g~~~ 143 (411)
+.++++|++||+||++.||++++.+ + + +++||+++++|||.+..++.+++...
T Consensus 125 ~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~ 204 (472)
T 1ohv_A 125 KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKA 204 (472)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCH
T ss_pred CCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCcc
Confidence 7889999999999999999998643 1 3 48999999999999999988877543
Q ss_pred c-ccCCCCCC----CCCCCCCCc-eeecCCC------CHHHHHHHHHcCCC---cEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 144 A-TLGLPDSP----GVPKGATYE-TLTAPFN------DVSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 144 ~-~~~~~~~~----~~~~~~~~~-~~~~~~~------d~~~l~~~~~~~~~---~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
. ....+... .++. ...+ ...++++ |+++++++++.+.+ ++++|++||+++++|.+.++++|+++
T Consensus 205 ~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~ 283 (472)
T 1ohv_A 205 IHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRK 283 (472)
T ss_dssp HHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHH
T ss_pred ccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHH
Confidence 2 11111110 0100 0000 0001122 68889998875322 78999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEecccccc-ccccCccccccCCC--cchhhhhhh-ccCCcccccccccHHHHHHhcCCCCcccccCC
Q 015230 209 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKI-IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 284 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~--~d~~~~sK~-~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~ 284 (411)
|+++|++||++||+||+|+|| ++|.++..+.+++. ||++||||+ ++||+++ ++++ . ......+++|+
T Consensus 284 l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~~~-----~~~~-~---~~~~~~~~~T~ 354 (472)
T 1ohv_A 284 LRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFH-----KEEF-R---PNAPYRIFNTW 354 (472)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEE-----CGGG-S---CSSSSSSCCSS
T ss_pred HHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCccC-----chhh-c---ccccccccCcc
Confidence 999999999999999999999 88877778888886 999999999 6765543 4443 1 22244567799
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeecceEEEEEecCCCCCcchhcccchHH
Q 015230 285 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 285 ~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
++++++++++.++++.+.++++.++++++.++++++|+++...++ ....+++.|+++++++.+ ...
T Consensus 355 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~-------------~~~ 421 (472)
T 1ohv_A 355 LGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPD-------------ESI 421 (472)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSS-------------HHH
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCC-------------hhH
Confidence 999999999999999887788999999999999999998866666 366677889999987631 224
Q ss_pred HHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 364 FARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 364 ~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...+.+.|.++||++.+++.+.+|+ ++.+|+++|++++++|+++++++
T Consensus 422 ~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 422 RNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999976667777 78999999999999999998764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=354.94 Aligned_cols=359 Identities=27% Similarity=0.411 Sum_probs=287.5
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCC-cHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-C-
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S- 91 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~-~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~- 91 (411)
.|+++.+++|+++||.+|++|+||.++.+++++||+ ||++++++.++++....+ .++.+...++++.+++.++ .
T Consensus 24 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 103 (419)
T 2eo5_A 24 FPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNF 103 (419)
T ss_dssp CCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSS
T ss_pred CCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 588899999999999999999999999988899997 999999999999875332 3677888999999999997 4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCC-CCCCCCCCCCCCceeecCCC-
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETLTAPFN- 168 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~- 168 (411)
+++|+||+||++|++.++++++.++ +++||+++++||+.+..+....+.. ...... +.. ..+..++++
T Consensus 104 ~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~ 174 (419)
T 2eo5_A 104 QKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFM--------PGVIHVPYPN 174 (419)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCC--------TTEEEECCCC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCC--------CCCEEECCCc
Confidence 6899999999999999999776555 7899999999999988877766542 111111 000 012222221
Q ss_pred --------------------CHHHHH-HHHHcCC--CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecc
Q 015230 169 --------------------DVSALE-NLFENNK--GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 169 --------------------d~~~l~-~~~~~~~--~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
|+++++ +.+++.. +++++|++||+++++|.+.++++++++|+++|++||++||+||+
T Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~ 254 (419)
T 2eo5_A 175 PYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254 (419)
T ss_dssp SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 467888 8887421 46889999999888998888899999999999999999999999
Q ss_pred cccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc
Q 015230 226 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303 (411)
Q Consensus 226 ~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~ 303 (411)
|++| +.|..+..+.+++.||++||||++++| +|+||++++++++ .+ . ..+..+++.++++++++.++++.+++
T Consensus 255 ~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~---~~~~~t~~~n~~~~~aa~aal~~~~~ 329 (419)
T 2eo5_A 255 QMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P---GMHSNTFGGNALACAIGSKVIDIVKD 329 (419)
T ss_dssp TTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC----------CCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C---cccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 888766677778899999999999999 9999999988876 54 2 23556899999999999999987654
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 383 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 383 (411)
++++++++.+++.+.|+++ ...+++.|+++++++.. ...... +.+.|.++||++.+++.
T Consensus 330 --~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~------------~~~~~~-~~~~l~~~Gv~v~~~~~ 388 (419)
T 2eo5_A 330 --LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE------------KKVRDR-IIGESFKRGLLLLPAGR 388 (419)
T ss_dssp --HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC------------HHHHHH-HHHHHHHTTEECEEETT
T ss_pred --HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec------------CccHHH-HHHHHHHCCCEEecCCC
Confidence 7888888888888888654 23456779999987731 112245 88889999999999866
Q ss_pred cceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 384 EAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 384 ~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.+|+ ++.+|++++++++++|+++++++
T Consensus 389 ~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 389 SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 67888 56889999999999999998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=352.89 Aligned_cols=364 Identities=25% Similarity=0.352 Sum_probs=305.5
Q ss_pred CCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCC
Q 015230 15 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSI 92 (411)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~ 92 (411)
....|+++.+++|+++||.+|++|+||.+++++.++||+||++.+++.++++..... .++.+...++++++++.++ .
T Consensus 15 ~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~ 93 (392)
T 3ruy_A 15 YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN-K 93 (392)
T ss_dssp CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT-C
T ss_pred CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-C
Confidence 345689999999999999999999999999988999999999999999999874322 2456778899999998885 8
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceee
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 164 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 164 (411)
+++++++||++|++.++++++.. ++++.|++..++||+....+....+......... . ....+..
T Consensus 94 ~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~ 166 (392)
T 3ruy_A 94 EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFG--P-----MLPGIIV 166 (392)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCC--S-----CCSSEEE
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccC--C-----CCCCCee
Confidence 89999999999999999987655 4577999999999999888877766533321111 0 1123566
Q ss_pred cCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC
Q 015230 165 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 243 (411)
Q Consensus 165 ~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~ 243 (411)
++++|+++++++++ +++++|++++++|++|.+.++++++++|.++|++||++||+||+|++| +.|..+..+.++..
T Consensus 167 ~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 243 (392)
T 3ruy_A 167 IPYGDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVT 243 (392)
T ss_dssp ECTTCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred eCcccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCC
Confidence 78889999999887 479999999999999999999999999999999999999999999999 88877777888889
Q ss_pred cchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 015230 244 PDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 322 (411)
Q Consensus 244 ~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 322 (411)
+|++++||+++|| +|+|++++++++++.+.. ...+.+++.++++++++.++++.+..++++++++++.+++++.|+
T Consensus 244 ~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 320 (392)
T 3ruy_A 244 PDMYILGKALGGGVFPISCAAANRDILGVFEP---GSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLK 320 (392)
T ss_dssp CSEEEECGGGGTTTSCCEEEEECHHHHTTCCT---TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEchhhhCChhhhEEEEECHHHHhhhcc---CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999998887763 335668899999999999999987768889999999999999987
Q ss_pred HHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHH
Q 015230 323 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHT 400 (411)
Q Consensus 323 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~ 400 (411)
++. .+......+.|.++++.+.. +..++.+.|.++||.+.+++.+.+|++ +.+|+++++++
T Consensus 321 ~~~--~~~~~~~~~~g~~~~~~~~~---------------~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~ 383 (392)
T 3ruy_A 321 EID--NPMITEVRGKGLFIGIELNE---------------PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWA 383 (392)
T ss_dssp TCC--CTTEEEEEEETTEEEEEESS---------------CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHH
T ss_pred Hhc--CCCceEEEeeeeEEEEEEcc---------------hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHH
Confidence 652 24455667779999988743 126788999999999999887788885 78899999999
Q ss_pred HHHHHHHHH
Q 015230 401 ITAAEKVLR 409 (411)
Q Consensus 401 i~~l~~~~~ 409 (411)
+++|+++++
T Consensus 384 ~~~l~~~l~ 392 (392)
T 3ruy_A 384 FQKIKAVLS 392 (392)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998863
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=346.92 Aligned_cols=378 Identities=28% Similarity=0.441 Sum_probs=300.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCCC-C-
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS-I- 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~-~- 92 (411)
.|+++.+++|+++||.+|++|+||.++.++.++||.+|++++++.++++.... ..++.....++++.+++.+++ .
T Consensus 23 ~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 102 (426)
T 1sff_A 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFA 102 (426)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSC
T ss_pred CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccc
Confidence 38889999999999999999999999987779999999999999999887422 124577788999999999843 4
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCCCCCCCCCCCCCCceeecCC----
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF---- 167 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~---- 167 (411)
+++++|+||++|++.++++++.+.++++|++.+++||+....+....|... ..... ... ...+..++.
T Consensus 103 ~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~--~~~-----~~~v~~v~~~~~~ 175 (426)
T 1sff_A 103 KKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGM--GLM-----PGHVYRALYPCPL 175 (426)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTS--CCC-----CSSEEEECCCBGG
T ss_pred cEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCcccccccc--CCC-----CCCcEEeCCCccc
Confidence 899999999999999999776666667999999999998877666655421 00000 000 001211221
Q ss_pred -C-----CHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 168 -N-----DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 168 -~-----d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
+ |++++++.+++ .++++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+
T Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 255 (426)
T 1sff_A 176 HGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAME 255 (426)
T ss_dssp GTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred cccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhh
Confidence 1 68899988874 12478999999998888888999999999999999999999999999999 777766667
Q ss_pred ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
..+..+|++||||++++|+|+||+++++++++.+.. .....+++.++++++++.++++.+.++++.++++++.++++
T Consensus 256 ~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~ 332 (426)
T 1sff_A 256 QMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAP---GGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLK 332 (426)
T ss_dssp GTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCT---TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhcc---CCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 778889999999999999999999999998887763 23456888999999999999998877788999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSS 394 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~ 394 (411)
++|+++...++.....++.|+++++++.+... ...+......++.+.|.++||++.++. .+.+|++ +.+++
T Consensus 333 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~ 407 (426)
T 1sff_A 333 DGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD-----HNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIED 407 (426)
T ss_dssp HHHHHHHHTCTTEEEEEEETTEEEEEEBGGGC-----TTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCH
T ss_pred HHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCH
Confidence 99998765566555566679999999853210 001223456788999999999999976 3567874 47899
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
+++++++++|++++++
T Consensus 408 ~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 408 AQIRQGLEIISQCFDE 423 (426)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=342.67 Aligned_cols=366 Identities=26% Similarity=0.364 Sum_probs=297.1
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.+|+.|+||.++++++++|+.+|++++++.++++..... .++.+...++++++++.++ .++
T Consensus 21 ~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~ 99 (397)
T 2ord_A 21 RFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF-GGK 99 (397)
T ss_dssp CCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT-SCE
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC-CCe
Confidence 4689999999999999999999999999888999999999999999999874321 2456788999999999884 789
Q ss_pred EEEeCChHHHHHHHHHHHHhc-----cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (411)
+++++||++|+..++++++.+ +++++|++.+++||+....+....|.......+ +. ...+..++++
T Consensus 100 v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 171 (397)
T 2ord_A 100 VFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPL--------VPGFEYFEFN 171 (397)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSC--------CTTEEEECTT
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCC--------CCCeeEecCC
Confidence 999999999999999876443 456789999999999887666555542111110 10 1235667777
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++++++.++ +++++|++++++|++|.+.++.+.+++|.++|++||++||+||+|+|+ +.|.......++..+|++
T Consensus 172 d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 248 (397)
T 2ord_A 172 NVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL 248 (397)
T ss_dssp CHHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee
Confidence 9999998886 378999999999999986777788999999999999999999999988 777655555667778999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
||||++++|+|+||++++++++ .+.. .....+++.++++++++.++++.+.+++++++++++.+++.+.|+++...
T Consensus 249 s~sK~~~~G~r~G~~~~~~~~~-~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (397)
T 2ord_A 249 TTAKGLGGGVPIGAVIVNERAN-VLEP---GDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEE 324 (397)
T ss_dssp EECGGGGTTSCCEEEEECSTTC-CCCT---TSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCcCeEEEEEchHhc-ccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888765 5442 23456888999999999999998877788999999999999999887544
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 405 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~ 405 (411)
++......+.|.++++++... ....++.+.|.++||.+.+++.+.+|++ +..+++++++++++|+
T Consensus 325 ~~~~~~~~~~g~~~~~~~~~~-------------~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~ 391 (397)
T 2ord_A 325 YDVVADVRGMGLMIGIQFREE-------------VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLK 391 (397)
T ss_dssp CTTEEEEEEETTEEEEEECTT-------------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEEeEEEEEEECCh-------------HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 565545567789999988431 1136788999999999999876678875 6789999999999999
Q ss_pred HHHHhC
Q 015230 406 KVLRQI 411 (411)
Q Consensus 406 ~~~~~~ 411 (411)
++++++
T Consensus 392 ~~l~~~ 397 (397)
T 2ord_A 392 KVLQGI 397 (397)
T ss_dssp HHHHTC
T ss_pred HHHhhC
Confidence 998763
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=332.28 Aligned_cols=363 Identities=30% Similarity=0.432 Sum_probs=294.2
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCC-CC
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
...|+++.++.|+++||.+|+.|+||.++.+++++|+.+|++++++.++++..... .++.+...++++++++.++ +.
T Consensus 25 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 104 (395)
T 1vef_A 25 NKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPEL 104 (395)
T ss_dssp CCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTE
T ss_pred CCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCc
Confidence 34688999999999999999999999999888899999999999999999874321 2467888999999999987 67
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC-CCCCCCCCCCCCCceeecCCCCHH
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ 171 (411)
+++++++||++|+..+++.++.+.++++||+.+++||+....+....|....... .+. ..++..++++|++
T Consensus 105 ~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~d~~ 176 (395)
T 1vef_A 105 NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL--------VEPVEFIPYNDVE 176 (395)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC--------SSCEEEECTTCHH
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC--------CCCeeEeCCCcHH
Confidence 8999999999999999987654467789999999999987766655554322110 011 1134455667999
Q ss_pred HHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhh
Q 015230 172 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG 250 (411)
Q Consensus 172 ~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~s 250 (411)
++++.++ +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+..+..+|++|||
T Consensus 177 ~l~~~i~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~s 253 (395)
T 1vef_A 177 ALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA 253 (395)
T ss_dssp HHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC
T ss_pred HHHHHhc---cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEc
Confidence 9999886 368999999998889998888999999999999999999999999988 667655566677789999999
Q ss_pred hhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 251 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 251 K~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
|++++|+|+|++++++++++.+.. .....+++.++++++++.++++.+..+++.++++++.+++.+.|+++.. +.
T Consensus 254 K~~~~g~~~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~ 328 (395)
T 1vef_A 254 KALGGGVPLGVAVMREEVARSMPK---GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--PK 328 (395)
T ss_dssp GGGGTTSSCEEEEEEHHHHHTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC--TT
T ss_pred ccccCCCceEEEEehHHHHhhhcc---CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc--Cc
Confidence 999999999999999888887764 2245578889999999999998876667888999999999998877521 33
Q ss_pred ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHH
Q 015230 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 331 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~ 407 (411)
....++.|.++++++... ..++.+.|. ++||.+.+++.+.+|+ ++.+|++++++++++|+++
T Consensus 329 ~~~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 329 IREVRGMGLMVGLELKEK---------------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp EEEEEEETTEEEEEESSC---------------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEEEEcCh---------------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 334556788999988421 257888888 8999999987677888 4578999999999999987
Q ss_pred HH
Q 015230 408 LR 409 (411)
Q Consensus 408 ~~ 409 (411)
++
T Consensus 394 l~ 395 (395)
T 1vef_A 394 LA 395 (395)
T ss_dssp HC
T ss_pred hC
Confidence 63
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=313.87 Aligned_cols=357 Identities=27% Similarity=0.388 Sum_probs=282.9
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|++++|.+|+.|+||.++...+++||.+|++++++.+.++... ...|+.....++.+++++.++-+++
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~ 88 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGK 88 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEE
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCe
Confidence 45889999999999999999999999997767889899999999999988642 1235566778899999998853389
Q ss_pred EEEeCChHHHHHHHHHHHHhcc-----CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+++|+||++|+..++++++.+. ++++|++.+++||+....+....+......... +. ...+..+++.|
T Consensus 89 v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~d 161 (375)
T 2eh6_A 89 VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFE-----PL--VPGFSYAKLND 161 (375)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTC-----SC--CSSEEEECTTC
T ss_pred EEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCC-----CC--CCCceeCCCch
Confidence 9999999999999998654333 348999999999998877666655432111110 00 11355566679
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhh
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~ 248 (411)
++++++.++ +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|++| +.+..+..+.++..+|+++
T Consensus 162 ~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s 238 (375)
T 2eh6_A 162 IDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA 238 (375)
T ss_dssp HHHHHTTCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE
Confidence 999988776 368999999999999999888999999999999999999999999988 6664445556677789999
Q ss_pred hhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 249 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 249 ~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
|||++++|+|+|++++++++++.+.. .....+++.++++++++.++++.+. ++.++++++.+++.+.|+++
T Consensus 239 ~SK~~~~g~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---- 309 (375)
T 2eh6_A 239 LAKGLGGGVPIGAILAREEVAQSFTP---GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKEL---- 309 (375)
T ss_dssp ECGGGGTTSCCEEEEEEHHHHTTCCT---TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT----
T ss_pred EcccccCCCCeEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999888877764 2244577889999999988888765 67788888888888888775
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
+. ....+.|+++++++... ..++.+.|.++||.+.+++.+.+|++ ...+++++++++++|++
T Consensus 310 ~~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 310 GK-GKVKGRGLMLGLELERE---------------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp TS-SEEEEETTEEEEECSSC---------------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred hc-CCceEEEEEEEEEEcCc---------------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 32 23456789999987421 15788889999999998766678885 57899999999999987
Q ss_pred HH
Q 015230 407 VL 408 (411)
Q Consensus 407 ~~ 408 (411)
++
T Consensus 374 ~l 375 (375)
T 2eh6_A 374 IL 375 (375)
T ss_dssp HC
T ss_pred hC
Confidence 63
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=297.80 Aligned_cols=368 Identities=11% Similarity=0.015 Sum_probs=259.3
Q ss_pred CccCcccccccCCCCCeEEEeecCcEEEecC--CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC-CCCHHHH
Q 015230 4 GVNSPVRAFKSVGGQPIVFDSVKGSHMWDID--GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLEN 79 (411)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~-~~~~~~~ 79 (411)
|.+-..+.|+..++++++..++.|+++||.+ |+.|+||..+ .+....+|++++++.++++... .|. ...++++
T Consensus 27 g~~~~~~~m~~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~ 103 (421)
T 3l8a_A 27 GQQMGRGSMGRYDFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQ 103 (421)
T ss_dssp -----------CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHH
T ss_pred ccccChhhhhhccCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHH
Confidence 3333344555567788899999999999998 8999999776 4444489999999999998732 232 2367788
Q ss_pred HHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCC
Q 015230 80 VLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 156 (411)
Q Consensus 80 ~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 156 (411)
++++++.+.++ .+++|+||+|+++|++.+++.+ ..+++.|++..++||+....+. ..|..+..++.....+
T Consensus 104 ~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~-~~g~~~~~~~~~~~~~--- 177 (421)
T 3l8a_A 104 AVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF--SEKGDAVLINSPVYYPFARTIR-LNDHRLVENSLQIING--- 177 (421)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHH-HTTEEEEEEECEEETT---
T ss_pred HHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHH-HCCCEEEeccccccCC---
Confidence 99999998775 5789999999999999999864 3455789999999998554433 3343333322210010
Q ss_pred CCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc
Q 015230 157 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235 (411)
Q Consensus 157 ~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~ 235 (411)
.+. .|++++++++++ +++++|++++++|++|.+ .+++.+++|+++|++||++||+||+|+++ +.|...
T Consensus 178 -----~~~---~d~~~le~~i~~--~~~~~vil~~p~nptG~~-~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~ 246 (421)
T 3l8a_A 178 -----RFE---IDFEQLEKDIID--NNVKIYLLCSPHNPGGRV-WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH 246 (421)
T ss_dssp -----EEE---CCHHHHHHHHHH--TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred -----Cee---eCHHHHHHHhhc--cCCeEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 001 189999999974 368888888888888854 45666999999999999999999999988 666321
Q ss_pred -cc-----cccCCCcchhhhhhhcc-CCccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CC
Q 015230 236 -AQ-----EYFGVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PG 305 (411)
Q Consensus 236 -~~-----~~~~~~~d~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~ 305 (411)
.+ +..+..+++.|+||+++ +|+|+|+++++ +++.+.+.... ....+++.++++++++.++++..++ ++
T Consensus 247 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~--~~~~~~~~n~~~~~a~~aal~~~~~~~~~ 324 (421)
T 3l8a_A 247 HSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQ--LANNQHEVPTVGMIATQAAFQYGKPWLEE 324 (421)
T ss_dssp CCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH--HHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred ccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHH--HhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence 11 12344566889999998 79999999887 88888776311 1233558899999999999875332 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-eEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC-
Q 015230 306 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ- 382 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~- 382 (411)
++++++++.+++++.|+++ +......+.|. +.|+++..... +..++.+.|.+ +||++.++.
T Consensus 325 ~~~~~~~~~~~l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~~------------~~~~l~~~l~~~~gi~v~~g~~ 388 (421)
T 3l8a_A 325 LKTVIEGNIKLVIKELEAK----TKIKVMEPEGTYLVWLDFSAYAI------------AQPQLSEKLQNEAKVVLNDGAH 388 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CSCEEECCSBSSEEEEECGGGTC------------CTTHHHHHHHHTTCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHhC----CCceEeCCCeeEEEEEeccccCC------------CHHHHHHHHHHhCCEEEECchh
Confidence 5566666677777766655 44444455455 55587753211 12567888875 599998853
Q ss_pred -----CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 383 -----FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 383 -----~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+.+|+++.++++++++++++|+++++
T Consensus 389 f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 389 FGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp GCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred hCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 345899888999999999999999875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=281.90 Aligned_cols=338 Identities=19% Similarity=0.190 Sum_probs=255.3
Q ss_pred EEE-eecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCCC------CCCHHHHHHHHHHHhhCCC
Q 015230 21 VFD-SVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVPS 91 (411)
Q Consensus 21 ~~~-~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~~------~~~~~~~~l~~~l~~~~~~ 91 (411)
.+. +++|++++| +|++++||.++ +++|+ .+|++++++.++++. +..++ +..+...++.+.+++.++
T Consensus 49 ~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g- 123 (427)
T 2w8t_A 49 VMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG- 123 (427)
T ss_dssp CCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT-
T ss_pred eccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC-
Confidence 566 899999999 99999999999 68895 899999999999987 32222 245778888899988884
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHH
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (411)
.++++++++|++|+..+++. +.++++.|+.+..+|+.........|. .+..++++|++
T Consensus 124 ~~~~i~~~sGs~a~~~al~~---l~~~gd~vl~~~~~h~~~~~~~~~~g~-------------------~~~~~~~~d~~ 181 (427)
T 2w8t_A 124 TTGAIVFSTGYMANLGIIST---LAGKGEYVILDADSHASIYDGCQQGNA-------------------EIVRFRHNSVE 181 (427)
T ss_dssp CSEEEEESCHHHHHHHHHHH---HSCTTCEEEEETTCCHHHHHHHHHSCS-------------------EEEEECTTCHH
T ss_pred CCceEEecCcHHHHHHHHHH---hcCCCCEEEECCcccHHHHHHHHHcCC-------------------eeEEeCCCCHH
Confidence 55788888999999998875 334444444455555544444444333 34556667999
Q ss_pred HHHHHHHcCCC-cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--cccCccccccCCCcc--
Q 015230 172 ALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFGVTPD-- 245 (411)
Q Consensus 172 ~l~~~~~~~~~-~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~~~~~~~~~~~~d-- 245 (411)
++++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+++ . .|.. ..+.+++.++
T Consensus 182 ~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~d 256 (427)
T 2w8t_A 182 DLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQID 256 (427)
T ss_dssp HHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCS
T ss_pred HHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCc
Confidence 99999986433 6899999999999999988 999999999999999999999865 2 2322 3344555555
Q ss_pred --hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHH
Q 015230 246 --LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGII 322 (411)
Q Consensus 246 --~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~ 322 (411)
+.|+||+++ ++.||+++++++++.+......+. .+.+.++++++++.++++.+.. ++++++++++.+++++.|+
T Consensus 257 i~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~ 333 (427)
T 2w8t_A 257 FVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYI-FTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLK 333 (427)
T ss_dssp EEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHH-SSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhc--cCCCEEEeCHHHHHHHHHhccccc-ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 669999997 356999999888888764322222 2567888999998899998866 6788899999999999998
Q ss_pred HHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeec--CC
Q 015230 323 DAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 392 (411)
Q Consensus 323 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~--~~ 392 (411)
++ ++...... .|.++++.+. +.....++.+.|.++||++.++.. ..+|+++ .+
T Consensus 334 ~~----g~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~ 396 (427)
T 2w8t_A 334 AM----GFRLGTETCDSAIVAVMLE-------------DQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEH 396 (427)
T ss_dssp HH----TCEESCSSCCSSEEEEEES-------------SHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTC
T ss_pred Hc----CCcccCCCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCC
Confidence 86 32221123 5778888873 234457899999999999988743 3577754 46
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 015230 393 SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~ 410 (411)
|++++++++++|++++++
T Consensus 397 t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 397 TPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=273.82 Aligned_cols=341 Identities=17% Similarity=0.246 Sum_probs=254.9
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccC-CCcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g-~~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~~ 90 (411)
+..+.+++|.+++| +|++|+||.++ +++| +.+|++.+++.++++... .+ .+..+...++.+++++.++
T Consensus 27 ~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~ 102 (399)
T 3tqx_A 27 ERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG 102 (399)
T ss_dssp CCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT
T ss_pred cccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC
Confidence 66788999999998 99999999999 8889 489999999999988721 11 1245667888888888885
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
. ++.+++++|++|+..+++.. ..+++.|++..+.|+ .+.......|. ++..+++.|+
T Consensus 103 ~-~~~i~~~sGt~a~~~~l~~~--~~~gd~v~~~~~~~~-~~~~~~~~~g~-------------------~~~~~~~~d~ 159 (399)
T 3tqx_A 103 T-DDTILYSSCFDANGGLFETL--LGPEDAIISDELNHA-SIIDGIRLCKA-------------------QRYRYKNNAM 159 (399)
T ss_dssp C-SEEEEESCHHHHHHTTHHHH--CCTTCEEEEETTCCH-HHHHHHHSCCS-------------------EEEEECTTCT
T ss_pred C-CcEEEECchHHHHHHHHHHh--cCCCCEEEECCcccH-HHHHHHHHcCC-------------------ceeEeCCCCH
Confidence 3 45666667899999988742 334455555555544 34333333333 3444555688
Q ss_pred HHHHHHHHcCCC---cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-c-cccCccccccCC--
Q 015230 171 SALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV-- 242 (411)
Q Consensus 171 ~~l~~~~~~~~~---~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~-~g~~~~~~~~~~-- 242 (411)
+++++.+++... ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ ++ . .+. ...+.+++
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~ 234 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR-GTPEYCGVAD 234 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-CHHHHHTCTT
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-chHHhhCCCC
Confidence 899988886322 6889999999999999988 9999999999999999999994 65 2 222 23445555
Q ss_pred Ccchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-hc-CChHHHHHHHHHHHH
Q 015230 243 TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE-PGTYEYLNKITGELT 318 (411)
Q Consensus 243 ~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-~~-~~~~~~~~~~~~~~~ 318 (411)
.+|++ |+||+++ |++.||+++++++++.+......+. .+.+.++++++++.++++.+ .. ++++++++++.+++.
T Consensus 235 ~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 312 (399)
T 3tqx_A 235 RVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYL-FSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFR 312 (399)
T ss_dssp CCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHH-SSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCccee-ccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 56776 8999999 6788999999999888764222221 24577889999999998877 43 778888999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeec-
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL- 390 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~- 390 (411)
+.|+++ ++... .+.|.++++.+. ...+..++.+.|.++||.+.++.+ +.+|+++
T Consensus 313 ~~L~~~----g~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 374 (399)
T 3tqx_A 313 AGMEKL----GFQLV-PGNHPIIPVMLG-------------DAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMS 374 (399)
T ss_dssp HHHHHH----TCCBC-CCSSSEEEEEEE-------------CHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECC
T ss_pred HHHHHc----CCCcC-CCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEee
Confidence 999887 32221 456888888873 334557899999999999996532 3578754
Q ss_pred -CCCHHHHHHHHHHHHHHHHhC
Q 015230 391 -AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 391 -~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+|++++++++++|+++++++
T Consensus 375 ~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 375 AVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=275.85 Aligned_cols=359 Identities=12% Similarity=0.063 Sum_probs=256.5
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC-CCCHHHHHHHHHHHhhCC---
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP--- 90 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~-~~~~~~~~l~~~l~~~~~--- 90 (411)
+++ ++..+++|+++||.+|+.++||..+ .+....+|++++++.+++++.. .|+ ...++++++++++.+.++
T Consensus 8 ~f~-~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~ 83 (391)
T 3dzz_A 8 DFT-HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARP 83 (391)
T ss_dssp CCS-SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCC
T ss_pred ccc-hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 444 7788999999999999999999987 4444489999999999998742 232 246678899999988764
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
.++++++|+|+++|+..+++.+ ..+++.|++..++|++.... ....|..+..++.....+ .+. .|+
T Consensus 84 ~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~--------~~~---~d~ 149 (391)
T 3dzz_A 84 KEDWCVFASGVVPAISAMVRQF--TSPGDQILVQEPVYNMFYSV-IEGNGRRVISSDLIYENS--------KYS---VNW 149 (391)
T ss_dssp CGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCHHHHHH-HHHTTCEEEECCCEEETT--------EEE---CCH
T ss_pred CHHHEEECCCHHHHHHHHHHHh--CCCCCeEEECCCCcHHHHHH-HHHcCCEEEEeeeeecCC--------cee---ecH
Confidence 5789999999999999999864 44668899999999874443 334444333332210111 000 189
Q ss_pred HHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-CccccccCC-Ccc--
Q 015230 171 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGV-TPD-- 245 (411)
Q Consensus 171 ~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~~~-~~d-- 245 (411)
+++++++++ .++++|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ +.|. ......++. .+|
T Consensus 150 ~~l~~~l~~--~~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~ 226 (391)
T 3dzz_A 150 ADLEEKLAT--PSVRMMVFCNPHNPIGYAWS-EEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWV 226 (391)
T ss_dssp HHHHHHHTS--TTEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGE
T ss_pred HHHHHHHhc--cCceEEEEECCCCCCCcccC-HHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcE
Confidence 999999974 36777777777777887655 444999999999999999999999988 5553 222322222 266
Q ss_pred --hhhhhhhcc-CCccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHH
Q 015230 246 --LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQ 319 (411)
Q Consensus 246 --~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 319 (411)
+.|+||+++ +|+|+||++++ +++++.+.... ....+++.++++++++.++++.... ++.+++++++.+++.+
T Consensus 227 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (391)
T 3dzz_A 227 VSLISPSKTFNLAALHAACAIIPNPDLRARAEESF--FLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE 304 (391)
T ss_dssp EEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH--HHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeChhhccccchhheEEEECCHHHHHHHHHHH--HhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 568999998 79999999886 88888776311 1233567888888888888875322 5556667777777777
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC------cceeeecCC
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAH 392 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~------~~~~~~~~~ 392 (411)
.|++... ++.......++++++++.... .+..++.+.|. ++||.+.++.. +.+|+++.+
T Consensus 305 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~ 370 (391)
T 3dzz_A 305 FLAKEVP--EVKVLDSNASYLAWVDISALG------------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC 370 (391)
T ss_dssp HHHHHCT--TSEECCCCBSSEEEEECGGGC------------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS
T ss_pred HHHhhCC--CcEEeccCceEEEEEehhhcC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 7766311 222222344666777774311 12367888885 88999998642 458998889
Q ss_pred CHHHHHHHHHHHHHHHHhC
Q 015230 393 SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~~ 411 (411)
+++++++++++|.++++++
T Consensus 371 ~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 371 PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=275.27 Aligned_cols=349 Identities=13% Similarity=0.083 Sum_probs=246.8
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC-CCCHHHHHHHHHHHhhCC---CCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVISAVP---SIE 93 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~-~~~~~~~~l~~~l~~~~~---~~~ 93 (411)
++...+++|+++||.+|++++||.++. ++++ .+|++++++.++++.. ..|. ...++++.+++++.+.++ .++
T Consensus 6 ~~~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~ 82 (377)
T 3fdb_A 6 SIEDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPE 82 (377)
T ss_dssp CHHHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGG
T ss_pred hHHHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHH
Confidence 334468999999999999999999883 3333 8999999999999873 2222 226788899999887654 578
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
++++|+||++|++.+++.+ ..+++.|++..++|++.... ....|..+..++.... .|++++
T Consensus 83 ~i~~t~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~----------------~d~~~l 143 (377)
T 3fdb_A 83 WIFPIPDVVRGLYIAIDHF--TPAQSKVIVPTPAYPPFFHL-LSATQREGIFIDATGG----------------INLHDV 143 (377)
T ss_dssp GEEEESCHHHHHHHHHHHH--SCTTCCEEEEESCCTHHHHH-HHHHTCCEEEEECTTS----------------CCHHHH
T ss_pred HEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHH-HHHcCCEEEEccCCCC----------------CCHHHH
Confidence 9999999999999999853 34567899999999975443 3344544444332211 189999
Q ss_pred HHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc-c----CccccccCCCcchh
Q 015230 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y----GGAQEYFGVTPDLT 247 (411)
Q Consensus 174 ~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g-~----~~~~~~~~~~~d~~ 247 (411)
++.++.. +++++++.++|++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..| . ....+..+..+++.
T Consensus 144 ~~~l~~~---~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 219 (377)
T 3fdb_A 144 EKGFQAG---ARSILLCNPYNPLGMVFA-PEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITIT 219 (377)
T ss_dssp HHHHHTT---CCEEEEESSBTTTTBCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEE
T ss_pred HHHhccC---CCEEEEeCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEE
Confidence 9999853 344444444667777665 445999999999999999999999988 555 1 11111222335567
Q ss_pred hhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHH
Q 015230 248 TLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 248 ~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~ 323 (411)
|+||+++ +|+|+||++. ++++++.+... ....+++.++++++++.++++..++ ++.+++++++.+++.+.|++
T Consensus 220 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 220 APSKAWNIAGLKCAQIIFSNPSDAEHWQQL---SPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp CSTTTTTCGGGCCEEEECCSHHHHHHHHHS---CHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChHhccCcchhheEEEeCCHHHHHHHHHH---HHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997 7999998755 78888887632 2334678899999998888875322 55666777777777777766
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------CcceeeecCCCHHH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDD 396 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~~~ 396 (411)
... ++.......++++|+++...... .++.+.|.++ ||.+.++. .+.+|+++..++++
T Consensus 297 ~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~ 361 (377)
T 3fdb_A 297 RIP--GAKITPMQATYLMWIDFRDTTIE-------------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREV 361 (377)
T ss_dssp HST--TCEECCCSBCSEEEEECTTSCCC-------------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHH
T ss_pred hCC--CceEecCCeeEEEEEECcccCCC-------------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHH
Confidence 411 22222233455667877542111 2456666655 99999864 24589988889999
Q ss_pred HHHHHHHHHHHHHhC
Q 015230 397 IQHTITAAEKVLRQI 411 (411)
Q Consensus 397 i~~~i~~l~~~~~~~ 411 (411)
+++++++|+++++++
T Consensus 362 i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 362 LEEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998763
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=264.66 Aligned_cols=343 Identities=19% Similarity=0.257 Sum_probs=250.6
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCCC---C---CCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFG---A---PCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~~---~---~~~~~~~l~~~l~~~~ 89 (411)
.|..+.+++|++++|.+|+.|+||.++ +++|+ .+|++++++.++++. ...++ + ......++.+.+++.+
T Consensus 27 ~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 103 (401)
T 1fc4_A 27 EERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL 103 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH
T ss_pred eeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence 477889999999999999999999999 78997 899999999999887 32221 1 1456778888888888
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+.. +.+++++|++|+..+++.+ ..+++.|++..+ +|+.........|. .+..++..|
T Consensus 104 g~~-~~i~~~sGs~a~~~~~~~~--~~~gd~v~~~~~-~~~~~~~~~~~~g~-------------------~~~~~~~~d 160 (401)
T 1fc4_A 104 GME-DAILYSSCFDANGGLFETL--LGAEDAIISDAL-NHASIIDGVRLCKA-------------------KRYRYANND 160 (401)
T ss_dssp TCS-EEEEESCHHHHHHTTHHHH--CCTTCEEEEETT-CCHHHHHHHHTSCS-------------------EEEEECTTC
T ss_pred CCC-cEEEeCChHHHHHHHHHHH--cCCCCEEEEcch-hHHHHHHHHHHcCC-------------------ceEEECCCC
Confidence 533 6667778999999988753 234455555544 44333333322232 344445558
Q ss_pred HHHHHHHHHcCCC---cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-c-cccCccccccCCC
Q 015230 170 VSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGVT 243 (411)
Q Consensus 170 ~~~l~~~~~~~~~---~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~-~g~~~~~~~~~~~ 243 (411)
++++++.+++..+ ++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+ |+ . .|..+ ....++.
T Consensus 161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~ 235 (401)
T 1fc4_A 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVM 235 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCT
T ss_pred HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCC
Confidence 9999998875211 5788888888888999888 9999999999999999999995 87 3 34332 2223333
Q ss_pred --cchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 015230 244 --PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELT 318 (411)
Q Consensus 244 --~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~ 318 (411)
.|++ |+||+++++. .||+++++++++.+...... ...+.+.++++++++.++++.+.. ++++++++++.+++.
T Consensus 236 ~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (401)
T 1fc4_A 236 GRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRP-YLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp TCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHH-HHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcC-ceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3555 8999996543 58998899998887632211 122567899999999999988764 577888888999998
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecC
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA 391 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~ 391 (411)
+.|+++ ++... .+.|.++++++. ...+..++.+.|.++||.+.++.. +.+|+++.
T Consensus 314 ~~L~~~----g~~~~-~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 314 EQMSAA----GFTLA-GADHAIIPVMLG-------------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HHHHHT----TCCBC-CSSSSEEEEEEE-------------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HHHHHc----CCccc-CCCCCEEEEEcC-------------ChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC
Confidence 888875 22221 356888898873 223457889999999999988743 24787654
Q ss_pred --CCHHHHHHHHHHHHHHHHhC
Q 015230 392 --HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 392 --~t~~~i~~~i~~l~~~~~~~ 411 (411)
+|++++++++++|+++++++
T Consensus 376 ~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 376 AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=261.56 Aligned_cols=340 Identities=19% Similarity=0.204 Sum_probs=251.8
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~ 89 (411)
.|+.+.+++|++++ .+|+.++||.++ .++|+ .+|.+++++.++++... .+ .+..+.++++++++++.+
T Consensus 26 ~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (398)
T 3a2b_A 26 YFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYV 101 (398)
T ss_dssp SSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHh
Confidence 47788999999999 999999999998 56788 89999999999987632 11 234688899999999988
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+ .+++++|+||++|+..+++.+ ..+++.|++.++.|. .+.......|.. +..++..|
T Consensus 102 g-~~~v~~~~ggt~a~~~~~~~~--~~~gd~V~~~~p~~~-~~~~~~~~~g~~-------------------~~~v~~~d 158 (398)
T 3a2b_A 102 G-KEAAILFSTGFQSNLGPLSCL--MGRNDYILLDERDHA-SIIDGSRLSFSK-------------------VIKYGHNN 158 (398)
T ss_dssp T-CSEEEEESSHHHHHHHHHHHS--SCTTCEEEEETTCCH-HHHHHHHHSSSE-------------------EEEECTTC
T ss_pred C-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEECCccCH-HHHHHHHHcCCc-------------------eEEeCCCC
Confidence 4 579999999999999999843 234556666665555 444444444442 33344458
Q ss_pred HHHHHHHHHcCCC-cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc---ccccCccccccCCC--
Q 015230 170 VSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVT-- 243 (411)
Q Consensus 170 ~~~l~~~~~~~~~-~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~---~~g~~~~~~~~~~~-- 243 (411)
++++++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ +.+... .+.++..
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~ 233 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDD 233 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGG
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcC
Confidence 9999999986432 6788889998988998888 999999999999999999999743 223222 3334432
Q ss_pred cchh--hhhhhccC-CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 015230 244 PDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 319 (411)
Q Consensus 244 ~d~~--~~sK~~~~-G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 319 (411)
+|++ |+||+++. | ||+++++++++.+..... .+..+...++..++++.++++.++. ++++++++++.+++.+
T Consensus 234 ~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 234 VDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNAR-SVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp CSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCH-HHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CeEEEecccccccCCC---cEEEeCHHHHHHHHHhcc-cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4665 89999984 5 899999998887763111 1223445666666667777776544 6778889999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecC-
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA- 391 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~- 391 (411)
.|+++ .+.. ..+.|+++++.+. ...+..++.+.|.++||.+.++.. +.+|+++.
T Consensus 310 ~L~~~--g~~~---~~~~g~~~~~~~~-------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~ 371 (398)
T 3a2b_A 310 QLLDH--GFDL---GATESPILPIFIR-------------SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA 371 (398)
T ss_dssp HHHHT--TCCB---CSCCSSEEEEECC-------------CHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred HHHhc--CCCc---CCCCCCEEEEEcC-------------CHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence 98876 2222 1345788888772 233457899999999999998743 34788765
Q ss_pred -CCHHHHHHHHHHHHHHHHhC
Q 015230 392 -HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 392 -~t~~~i~~~i~~l~~~~~~~ 411 (411)
++++++++++++|+++++++
T Consensus 372 ~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 372 THTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=258.85 Aligned_cols=355 Identities=13% Similarity=0.063 Sum_probs=228.8
Q ss_pred CCCeEEEeecCcEEEecCCC-----EEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCCC-CCH-HHHHHHHHHHhh
Q 015230 17 GQPIVFDSVKGSHMWDIDGN-----EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA-PCL-LENVLAEMVISA 88 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~-----~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~~-~~~-~~~~l~~~l~~~ 88 (411)
++.++-.++.|+++||.+|+ .++||.++. ..++ .+|++++++.++++.. ..|.. ..+ +++++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~ 80 (390)
T 1d2f_A 4 FSKVVDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQ 80 (390)
T ss_dssp --------------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHh
Confidence 44566788999999999987 789997773 3355 7899999999998763 22221 466 888999998877
Q ss_pred CC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeec
Q 015230 89 VP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 165 (411)
Q Consensus 89 ~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (411)
++ .+++|++|+|+++|++.+++.+ ..+++.|++..++||+....+ ...|..+..++.....+ .+.
T Consensus 81 ~g~~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~--------~~~- 148 (390)
T 1d2f_A 81 HYTAIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVIHTPAYDAFYKAI-EGNQRTVMPVALEKQAD--------GWF- 148 (390)
T ss_dssp SCCCCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEECEECSS--------SEE-
T ss_pred cCCCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHH-HHCCCEEEEeecccCCC--------ccc-
Confidence 64 4689999999999999999853 245678999999999755443 33344333332211100 000
Q ss_pred CCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCc
Q 015230 166 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244 (411)
Q Consensus 166 ~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~ 244 (411)
.|++++++.++.. ++++|+++.++|++|.+.+ .+++++|.++|++||+++|+||+|+++ ..|.... ....+.+
T Consensus 149 --~d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~ 222 (390)
T 1d2f_A 149 --CDMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWT-CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVAR 222 (390)
T ss_dssp --CCHHHHHHHHTST--TEEEEEEESSCTTTCCCCC-TTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCC
T ss_pred --cCHHHHHHHhccC--CCeEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcch
Confidence 2899999998742 5677666555666777654 456999999999999999999999987 5553211 1112222
Q ss_pred ---c-hhhhhhhcc-CCccccccccc-HHHHHHhcCCCCccc-ccCC-CCCHHHHHHHHHHHHHHhc--CChHHHHHHHH
Q 015230 245 ---D-LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQ-AGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKIT 314 (411)
Q Consensus 245 ---d-~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~-~~t~-~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~ 314 (411)
| +.|+||+++ +|+|+||++++ +++++.+.. ... ..++ +.++++++++.++++...+ ++.+++++++.
T Consensus 223 ~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 299 (390)
T 1d2f_A 223 GDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNL 299 (390)
T ss_dssp SSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHhhccCccHhhcccChhheEEEECCHHHHHHHHH---HHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2 789999998 89999999874 778777652 122 2344 7788998888888874222 44555666666
Q ss_pred HHHHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------Ccce
Q 015230 315 GELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAG 386 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~ 386 (411)
+++.+.|++. .+......+ .|+++|+++.... .+..++.+.|. ++||.+.++. .+.+
T Consensus 300 ~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~ 364 (390)
T 1d2f_A 300 TYIADKMNAA---FPELNWQIPQSTYLAWLDLRPLN------------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFV 364 (390)
T ss_dssp HHHHHHHHHH---CSSCCCCCCSBCSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEE
T ss_pred HHHHHHHHhh---CCCCEEecCCccEEEEEEccccC------------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeE
Confidence 6666666652 222222223 3556678774210 11367888888 5799998863 2458
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHh
Q 015230 387 FTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 387 ~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+++..+++++++++++|.+++++
T Consensus 365 Ris~~~~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 365 RLNAGCPRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp EEECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHHHh
Confidence 998888899999999999998875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=265.98 Aligned_cols=334 Identities=15% Similarity=0.097 Sum_probs=241.3
Q ss_pred EEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhCCCCC
Q 015230 22 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPSIE 93 (411)
Q Consensus 22 ~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~~~~~ 93 (411)
..++.+.++.+.+|++|+||.++ +++|+ .||++++++.+++++.. .. .+..+..+++++++++.+ +.+
T Consensus 45 ~~~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~ 120 (409)
T 3kki_A 45 NKNGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFD 120 (409)
T ss_dssp STTSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCS
T ss_pred ccCCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCC
Confidence 34566777778899999999998 88888 89999999999998731 11 122344566777777766 445
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
..+++++|++|+..+++.. ..+++.|++ +..+|..+.......|. ++..++++|++++
T Consensus 121 ~~i~~~sGt~a~~~~l~~~--~~~gd~Vl~-~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l 178 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTI--CQPNTNVYI-DFFAHMSLWEGARYANA-------------------QAHPFMHNNCDHL 178 (409)
T ss_dssp EEEEESCHHHHHHHHHHHH--CCTTCEEEE-ETTSCHHHHHHHHHTTC-------------------EEEEECTTCHHHH
T ss_pred eEEEecchHHHHHHHHHHh--cCCCCEEEE-CCCcCHHHHHHHHHcCC-------------------eEEEecCCCHHHH
Confidence 6677788999999998842 234455555 45555444444444433 2334455699999
Q ss_pred HHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc--c-ccccCccccccCC--Ccch--
Q 015230 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGV--TPDL-- 246 (411)
Q Consensus 174 ~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g--~-~~g~~~~~~~~~~--~~d~-- 246 (411)
++.+++. ++++|+++++++++|.+.+ +++|.++|++||++||+||+|++ + +.|..+. ..+++ .+|+
T Consensus 179 e~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~ 251 (409)
T 3kki_A 179 RMLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMT 251 (409)
T ss_dssp HHHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEE
T ss_pred HHHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEE
Confidence 9999853 3589999999999999988 99999999999999999999986 4 4454333 34444 3555
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
.|+||++++| .|++++++++++.+......+.. +...++++++++.++++.++. ++++++++++.+++.+.|+++
T Consensus 252 ~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~- 327 (409)
T 3kki_A 252 ASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIF-SSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL- 327 (409)
T ss_dssp EESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHH-SBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred eecchhhCCC--ceEEEECHHHHHHHHHhCcCccc-cCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-
Confidence 6899999965 58888888877766532111212 334678888899999987766 577788888888898888876
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Ccceeee--cCCCHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTS--LAHSSDD 396 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~--~~~t~~~ 396 (411)
++. +.+.|.++++.+.. .....++.+.|.++||++.+.. .+.+|++ ..+|+++
T Consensus 328 ---g~~--~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 389 (409)
T 3kki_A 328 ---GLT--IRSESQIIGLETGD-------------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ 389 (409)
T ss_dssp ---TCC--CCCSSSEEEEEEES-------------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred ---CCc--cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence 222 12468888888842 3345678999999999996532 3457775 4579999
Q ss_pred HHHHHHHHHHHHHh
Q 015230 397 IQHTITAAEKVLRQ 410 (411)
Q Consensus 397 i~~~i~~l~~~~~~ 410 (411)
+++++++|+++++.
T Consensus 390 i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 390 IAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999865
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=264.25 Aligned_cols=355 Identities=12% Similarity=0.044 Sum_probs=248.3
Q ss_pred CCCCeEEEeecCcEEEecCC-----CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CC-CCCCHHHHHHHHHHHhh
Q 015230 16 GGQPIVFDSVKGSHMWDIDG-----NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SF-GAPCLLENVLAEMVISA 88 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g-----~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~-~~~~~~~~~l~~~l~~~ 88 (411)
.++.++..++.|+++||.+| +.++||.++ .+....+|++++++.++++... .+ .+..++++++++++++.
T Consensus 7 ~~~~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~ 83 (391)
T 4dq6_A 7 NFNEIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRR 83 (391)
T ss_dssp CTTSCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 45566778999999999865 455999887 4444488999999999998732 22 23467889999999988
Q ss_pred CC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCCCCCCCCCCceee
Q 015230 89 VP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLT 164 (411)
Q Consensus 89 ~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 164 (411)
++ ..+++++|+|+++|++.+++.+ ..+++.|++..++|++....+ ...|..+..++.. ...+ .+.
T Consensus 84 ~g~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------~~~ 152 (391)
T 4dq6_A 84 HNWKIKSEWLIYSPGVIPAISLLINEL--TKANDKIMIQEPVYSPFNSVV-KNNNRELIISPLQKLENG--------NYI 152 (391)
T ss_dssp HCCCCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCTHHHHHH-HHTTCEEEECCCEECTTS--------CEE
T ss_pred hCCCCcHHHeEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCCHHHHHHH-HHcCCeEEeeeeeecCCC--------ceE
Confidence 75 5789999999999999999854 345688999999998754433 3444444443322 1111 001
Q ss_pred cCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc--
Q 015230 165 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-- 240 (411)
Q Consensus 165 ~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~-- 240 (411)
+ |++++++.++. +++++++.+++++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..|.. .....+
T Consensus 153 ~---d~~~l~~~l~~----~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 224 (391)
T 4dq6_A 153 M---DYEDIENKIKD----VKLFILCNPHNPVGRVWT-KDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISK 224 (391)
T ss_dssp C---CHHHHHHHCTT----EEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred e---eHHHHHHHhhc----CCEEEEECCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCc
Confidence 1 89999998873 677777766777787655 444999999999999999999999988 55532 111111
Q ss_pred ---CCCcchhhhhhhcc-CCcccccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHH
Q 015230 241 ---GVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKI 313 (411)
Q Consensus 241 ---~~~~d~~~~sK~~~-~G~~~g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~ 313 (411)
+....+.|+||+++ +|+|+||+++++ ++++.+.... ....+++.++++++++.++++..++ ++.+++++++
T Consensus 225 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (391)
T 4dq6_A 225 EFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAF--TRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESN 302 (391)
T ss_dssp HHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH--HHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 12234568999998 799999998764 7777775311 1233567889999998888875322 4455566666
Q ss_pred HHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------Ccc
Q 015230 314 TGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 385 (411)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~ 385 (411)
.+++.+.|++. .+...... ..++++|+++.... .+..++.+.|.++ ||.+.++. .+.
T Consensus 303 ~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~ 367 (391)
T 4dq6_A 303 IDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALG------------LSDEELESILVQKGKVALNQGNSFGIGGSGY 367 (391)
T ss_dssp HHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTE
T ss_pred HHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcC------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCe
Confidence 66666666553 23332223 34556668774311 1236789999998 99998863 245
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHH
Q 015230 386 GFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 386 ~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+|+++.++++++++++++|+++++
T Consensus 368 iRis~~~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 368 QRINLACPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhC
Confidence 899888999999999999998863
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=254.57 Aligned_cols=337 Identities=17% Similarity=0.193 Sum_probs=245.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CC-----CCC-CCCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GT-----SFG-APCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~-----~~~-~~~~~~~~l~~~l~~~~ 89 (411)
.|+.+.+++|++++ .+|+.|+||.++ .++|+ .+|++++++.++++. +. .+. +......++.+.+++.+
T Consensus 22 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 97 (384)
T 1bs0_A 22 RRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 97 (384)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 47788999999999 899999999998 55785 899999999999877 32 121 24567788888888888
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+ .++.+++++|++|+..+++. +.++++.|+.+..+|+.+.......|. .+..++..|
T Consensus 98 g-~~~~i~~~sGt~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 154 (384)
T 1bs0_A 98 G-YSRALLFISGFAANQAVIAA---MMAKEDRIAADRLSHASLLEAASLSPS-------------------QLRRFAHND 154 (384)
T ss_dssp T-CSEEEEESCHHHHHHHHHHH---HCCTTCEEEEETTCCHHHHHHHHTSSS-------------------EEEEECTTC
T ss_pred C-CCcEEEeCCcHHHHHHHHHH---hCCCCcEEEEcccccHHHHHHHHHcCC-------------------CEEEeCCCC
Confidence 5 34677778889999998874 334444455555566554444444333 234455568
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCCCcch
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~~~d~ 246 (411)
++++++.+++..++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+ ++ +.+... .+.++..+|+
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~di 229 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQKVKPEL 229 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTTCCCSE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HHhcCCCCcE
Confidence 99999999865434788888888888999988 9999999999999999999996 33 233322 2345556787
Q ss_pred h--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHH
Q 015230 247 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 321 (411)
Q Consensus 247 ~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l 321 (411)
+ |+||+++. +.||+++++++++.+......+ ..+.+.++++++++.++++.+.+ ++++++++++.+++.+.|
T Consensus 230 ~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 306 (384)
T 1bs0_A 230 LVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHL-IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306 (384)
T ss_dssp EEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHH-HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccchhhc--cCcEEEeCHHHHHHHHHhchhh-hcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 6 89999984 3499999998888776322122 22446889999998888887762 466777788888888777
Q ss_pred HHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeec--CC
Q 015230 322 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 392 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~--~~ 392 (411)
+++ ++.. ..+.|.++++.+. ...+..++.+.|.++||.+.++.. +.+|+++ .+
T Consensus 307 ~~~----g~~~-~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 307 QDL----PFTL-ADSCSAIQPLIVG-------------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp TTS----SCEE-CSCCSSBCCEEEE-------------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred Hhc----CCcc-cCCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 664 3221 1255777788773 223457899999999999998642 3577754 45
Q ss_pred CHHHHHHHHHHHHHH
Q 015230 393 SSDDIQHTITAAEKV 407 (411)
Q Consensus 393 t~~~i~~~i~~l~~~ 407 (411)
|++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=256.40 Aligned_cols=351 Identities=14% Similarity=0.064 Sum_probs=238.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
..++||.++. .+++ .+|.+++++.++++.. ..|+ +..++++++++++.+.++ .++ ++++|+||++|
T Consensus 37 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 4589998885 3455 7899999999998762 2232 235678888888877654 467 99999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-CCHHHHHHHHHcCCCc
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGE 183 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~~ 183 (411)
++.+++.+ ..+++.|++..++||+.... ....|..+..++....... .......+ .|++++++.++ ++
T Consensus 114 ~~~~~~~~--~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~l~---~~ 182 (429)
T 1yiz_A 114 LYATIQGH--VDEGDEVIIIEPFFDCYEPM-VKAAGGIPRFIPLKPNKTG-----GTISSADWVLDNNELEALFN---EK 182 (429)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECBCCCSS-----SSEEGGGCBCCHHHHHHHCC---TT
T ss_pred HHHHHHHh--cCCCCEEEEcCCCchhHHHH-HHHcCCEEEEEeCCccccc-----ccccccCcccCHHHHHHHhc---cC
Confidence 99999864 34568899999999985543 3344544444332211000 00000011 28999998885 46
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccc----ccCCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQE----YFGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~----~~~~~~d~~~~sK~~~-~G 256 (411)
+++|++++++|++|.+. +++++++|.++|++||+++|+||+|+++ ..|. ..... ..+..+++.|+||.++ +|
T Consensus 183 ~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 261 (429)
T 1yiz_A 183 TKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG 261 (429)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG
T ss_pred ceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC
Confidence 78888777777788765 4667999999999999999999999988 5442 11111 2344556779999999 79
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-----HhcCChH----HHHHHHHHHHHHHHHHHHHh
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTY----EYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-----~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 327 (411)
+|+||+++++++++.+.. .....+++.++++++++.++++. ...++.. ++++++.+++.+.|+++
T Consensus 262 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 335 (429)
T 1yiz_A 262 WKIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV--- 335 (429)
T ss_dssp GCCEEEESCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cceEEEEeCHHHHHHHHH---HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 999999999999888763 22345788899999999999887 3223334 44555555555555543
Q ss_pred cCCceEEeeecceEEEEEecCCCCC-cchhcccchHHHHHHHHHHH-HcCeEeccCC-----------CcceeeecCCCH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYN-FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSS 394 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----------~~~~~~~~~~t~ 394 (411)
++.......|+++|+++.....+. ... .....+..++.+.|. ++||.+.++. .+.+|+++..++
T Consensus 336 -g~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~ 412 (429)
T 1yiz_A 336 -GMNPTVPQGGYFMVADWSSLDSKVDLTQ--ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKD 412 (429)
T ss_dssp -TCEEEECSBSSEEEEECCSSCTTTTCCS--SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCH
T ss_pred -CCcccCCCcceEEEEEcccccccccccc--cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCH
Confidence 444333445789999885321000 000 000023457778776 7899998862 346899888899
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
+++++++++|+++++.
T Consensus 413 e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 413 ENLQKAAEILRKWKGS 428 (429)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999998754
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=262.98 Aligned_cols=357 Identities=11% Similarity=0.013 Sum_probs=245.0
Q ss_pred ccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVL 81 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l 81 (411)
+++.++.++. .++....+.+.++++.+|+.++||.++. .+++ .+|.+++++.+.++....|+ +..++++++
T Consensus 2 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~l 75 (396)
T 3jtx_A 2 MNTLLKQLKP---YPFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQAC 75 (396)
T ss_dssp HHHHHHHCCS---CHHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHH
T ss_pred hhhhhccCCC---ChHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHH
Confidence 4444444442 3555556677777888999999999985 3333 78999999999887543443 346788999
Q ss_pred HHHHHhhCC----CCC-EEEEeCChHHHHHHHHHHHHhccCC----cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 82 AEMVISAVP----SIE-MVRFVNSGTEACMGVLRLARAFTGR----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 82 ~~~l~~~~~----~~~-~v~~~~~g~~a~~~al~~~~~~~~~----~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
++++.+.++ .++ ++++|+|+++|+..+++.+.. .++ +.|++..++|++.... ....|..+..++. ...
T Consensus 76 a~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~vl~~~p~~~~~~~~-~~~~g~~~~~v~~-~~~ 152 (396)
T 3jtx_A 76 ANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN-PVSDGIKPAIVSPNPFYQIYEGA-TLLGGGEIHFANC-PAP 152 (396)
T ss_dssp HHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCC-C---CCCCEEEEEESCCHHHHHH-HHHTTCEEEEEEC-CTT
T ss_pred HHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCEEEEcCCCcHhHHHH-HHHcCCEEEEeec-CCC
Confidence 999988775 267 999999999999999986422 222 6899999999865443 3344544444333 122
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~ 231 (411)
++.. |++++++.++. ++++++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..
T Consensus 153 g~~~------------d~~~l~~~~~~---~~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 216 (396)
T 3jtx_A 153 SFNP------------DWRSISEEVWK---RTKLVFVCSPNNPSGSVLD-LDGWKEVFDLQDKYGFIIASDECYSEIYFD 216 (396)
T ss_dssp TCCC------------CGGGSCHHHHH---TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHCCEEEEECTTTTCCST
T ss_pred CCcc------------CHHHHHHhhcc---CcEEEEEECCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 2211 77888888874 5667666555677777665 444999999999999999999999988 55
Q ss_pred c-cCccc-c-------ccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH
Q 015230 232 A-YGGAQ-E-------YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301 (411)
Q Consensus 232 g-~~~~~-~-------~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~ 301 (411)
+ ..... . ..+..+++.|+||.++ +|+|+||+++++++++.+.. .....+++.++++++++.++++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~ 293 (396)
T 3jtx_A 217 GNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL---YRTYHGSAMSIPVQRASIAAWDDE 293 (396)
T ss_dssp TCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH---HHHHHTCCCCHHHHHHHHHHHHCC
T ss_pred CCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHhCCH
Confidence 5 22221 1 1344566779999987 69999999999999888763 223446788999999988887631
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEec
Q 015230 302 KE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFA 379 (411)
Q Consensus 302 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~ 379 (411)
.. ++.+++++++.+++.+.|++. .+. .....|+++|+++... +...+.+.|. ++||.+.
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~l~~~---~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~ 354 (396)
T 3jtx_A 294 QHVIDNRRLYQEKFERVIPILQQV---FDV--KLPDASFYIWLKVPDG--------------DDLAFARNLWQKAAIQVL 354 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT---SCC--CCCSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCc--cCCCeeEEEEEECCCC--------------CHHHHHHHHHHHCCEEEe
Confidence 11 333444444444444444432 121 1234577888887431 1256777774 5699998
Q ss_pred cCC------------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 380 PSQ------------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 380 ~~~------------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
++. .+.+|+++..+++++++++++|++++
T Consensus 355 ~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 355 PGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp EGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 853 24578988889999999999999875
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=260.83 Aligned_cols=357 Identities=15% Similarity=0.086 Sum_probs=243.4
Q ss_pred CCCCeEEEeecCcEEEecCC-------CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC-CCCHHHHHHHHHHH
Q 015230 16 GGQPIVFDSVKGSHMWDIDG-------NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVI 86 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g-------~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~-~~~~~~~~l~~~l~ 86 (411)
+++.++..++.|+++||.+| +.++||.++. .+++ .+|.+.+++.++++.. ..|. ...++++.+++++.
T Consensus 4 ~~~~~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~ 80 (399)
T 1c7n_A 4 DFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMK 80 (399)
T ss_dssp CSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHH
T ss_pred cccccccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHH
Confidence 34455667899999999776 3789998774 3333 7899999999998763 2222 14567788888877
Q ss_pred hhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCcee
Q 015230 87 SAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL 163 (411)
Q Consensus 87 ~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 163 (411)
+.++ ..+++++|+|+++|+..+++.+ ..+++.|++..++||+....+ ...|..+..++.....+ .+
T Consensus 81 ~~~g~~~~~~~v~~t~g~~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~g--------~~ 149 (399)
T 1c7n_A 81 DRHQWDIQTDWIINTAGVVPAVFNAVREF--TKPGDGVIIITPVYYPFFMAI-KNQERKIIECELLEKDG--------YY 149 (399)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHH-HTTTCEEEECCCEEETT--------EE
T ss_pred HHhCCCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHH-HHcCCEEEecccccCCC--------CE
Confidence 6554 4789999999999999999853 345678999999999755443 33344333322210111 00
Q ss_pred ecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Cccccc--
Q 015230 164 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY-- 239 (411)
Q Consensus 164 ~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~-- 239 (411)
. .|++++++.+++ .++++|+++.++|++|.+. +.+++++|.++|++||++||+||+|+++ ..|. ......
T Consensus 150 ~---~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (399)
T 1c7n_A 150 T---IDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID 223 (399)
T ss_dssp E---CCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred E---EcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence 1 289999999873 3577777666667777765 4667999999999999999999999987 5442 112211
Q ss_pred ---cCCCcchhhhhhhcc-CCccccccccc-HHHHHHhcCCCCcccccCC-CCCHHHHHHHHHHHHHHhc--CChHHHHH
Q 015230 240 ---FGVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLN 311 (411)
Q Consensus 240 ---~~~~~d~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~-~~~~~~~a~~~~~l~~~~~--~~~~~~~~ 311 (411)
.+....+.|+||+++ +|+|+||++++ +++++.+... ....++ +.++++++++.++++...+ ++.+++++
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 300 (399)
T 1c7n_A 224 EQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKS---RDATSGMPFTTLGYKACEICYKECGKWLDGCIKVID 300 (399)
T ss_dssp HHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH---HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHH---HhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 223345679999999 79999999886 6688777631 122223 5688999988888864221 44555566
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------C
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------F 383 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~ 383 (411)
++.+++.+.|++. .+......+ .++++|+++.... .+..++.+.|. ++||.+.++. .
T Consensus 301 ~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 365 (399)
T 1c7n_A 301 KNQRIVKDFFEVN---HPEIKAPLIEGTYLQWIDFRALK------------MDHKAMEEFMIHKAQIFFDEGYIFGDGGI 365 (399)
T ss_dssp HHHHHHHHHHHHH---CTTSBCCCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCCCCEEGGGGCGGGT
T ss_pred HHHHHHHHHHHhh---CCCCeEecCCceEEEEEEcccCC------------CCHHHHHHHHHHhCCEEEeCccccCCCCC
Confidence 6666666666652 222222233 3556678774210 11357888887 6799998863 2
Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 384 EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 ~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|+++..+++++++++++|.+++++
T Consensus 366 ~~iRis~~~~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 366 GFERINLAAPSSVIQESLERLNKALKD 392 (399)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccCHHHHHHHHHHHHHHHHH
Confidence 458998888899999999999998875
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=251.08 Aligned_cols=333 Identities=14% Similarity=0.152 Sum_probs=224.1
Q ss_pred eecCcEEEe---cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeC
Q 015230 24 SVKGSHMWD---IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVN 99 (411)
Q Consensus 24 ~~~g~~~~~---~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~ 99 (411)
..+|..+++ .+|+.++||.++. ++++ .+|++++++.++++....| +.....++.+++++.++ .++++++|+
T Consensus 11 ~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~i~~~~ 85 (361)
T 3ftb_A 11 MIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGVY--PDVNYRRLNKSIENYLKLKDIGIVLGN 85 (361)
T ss_dssp -----------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGSC--CCTTCHHHHHHHHHHHTCCSCEEEEES
T ss_pred ccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHhCCCcceEEEcC
Confidence 334455554 4889999999985 4554 6899999999998874333 33444667777777776 678999999
Q ss_pred ChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 100 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 100 ~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
||++|++.+++. + +.|++..++|++.... ....|..+..++.....++ +++++++.++.
T Consensus 86 g~t~al~~~~~~---~---d~vi~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--------------~~~~l~~~l~~ 144 (361)
T 3ftb_A 86 GASEIIELSISL---F---EKILIIVPSYAEYEIN-AKKHGVSVVFSYLDENMCI--------------DYEDIISKIDD 144 (361)
T ss_dssp SHHHHHHHHHTT---C---SEEEEEESCCTHHHHH-HHHTTCEEEEEECCTTSCC--------------CHHHHHHHTTT
T ss_pred CHHHHHHHHHHH---c---CcEEEecCChHHHHHH-HHHcCCeEEEeecCcccCC--------------CHHHHHHhccC
Confidence 999999999983 3 8899999999975443 3334544444333222222 67889888873
Q ss_pred CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC---cchhhhhhhcc-
Q 015230 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT---PDLTTLGKIIG- 254 (411)
Q Consensus 180 ~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~---~d~~~~sK~~~- 254 (411)
+++++++.++|++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..+........+.. ..+.|+||.++
T Consensus 145 ----~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 219 (361)
T 3ftb_A 145 ----VDSVIIGNPNNPNGGLIN-KEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAM 219 (361)
T ss_dssp ----CSEEEEETTBTTTTBCCC-HHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSC
T ss_pred ----CCEEEEeCCCCCCCCCCC-HHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCC
Confidence 455555555666776665 444999999999999999999999988 43222222222222 22458999999
Q ss_pred CCccccccc-ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 255 GGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 255 ~G~~~g~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+|+|+||++ .++++++.+.... .+++.++++++++.++++..+. ++.+++++++.+++.+.|++ .+...
T Consensus 220 ~G~r~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~ 290 (361)
T 3ftb_A 220 PGIRFGYGITNNKEIAAKIKAKQ-----NPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNK----IGFIK 290 (361)
T ss_dssp GGGCCEEEEESCHHHHHHHHTTS-----CTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH----SSSEE
T ss_pred CCcceeEEEeCCHHHHHHHHhhC-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CCCCc
Confidence 799999997 8999998887422 2568899999998888763111 33444455555555555543 45444
Q ss_pred -EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHH
Q 015230 333 -CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 333 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~ 405 (411)
...+.|.++++.+.. .+..++.+.|.++||.+.++. .+.+|+++. +.++++++++.|+
T Consensus 291 ~~~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~ 355 (361)
T 3ftb_A 291 RVFSPHANFVLCRLEN--------------ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALK 355 (361)
T ss_dssp EEECCSSSEEEEEESS--------------SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred eecCCCCeEEEEEcCC--------------CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHH
Confidence 556678888888743 113678999999999999864 245788866 8888999999998
Q ss_pred HHHHhC
Q 015230 406 KVLRQI 411 (411)
Q Consensus 406 ~~~~~~ 411 (411)
++.+.+
T Consensus 356 ~~~~~l 361 (361)
T 3ftb_A 356 GVENNL 361 (361)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 887653
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=249.76 Aligned_cols=338 Identities=16% Similarity=0.139 Sum_probs=239.6
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.|+.++||.++.. ++.++.++.+.+++.++++... .|+ +..++++.+++++.+.++ .++++++|+|+++|
T Consensus 32 ~g~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 32 KGVKLISLAAGDP-DPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SSCCCEECCSCCC-CTTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCCceEeCCCCCC-CchhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 3678999988753 3456788999999999987631 132 235678888888877665 47899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH----cC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NN 180 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~ 180 (411)
+..+++.+ ..+++.|++..++|++.... ....|..+..++... .+ .|++++++.++ ..
T Consensus 111 ~~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~ 172 (407)
T 2zc0_A 111 LDLLGRVL--IDPGDVVITENPSYINTLLA-FEQLGAKIEGVPVDN-DG--------------MRVDLLEEKIKELKAKG 172 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHH-HHTTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh--cCCCCEEEEeCCChHHHHHH-HHHcCCEEEEcccCC-CC--------------CCHHHHHHHHHhhhccc
Confidence 99999864 34568899999999975433 333343333322110 01 18999999987 42
Q ss_pred CCcEEEEE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc---CCCcchhhhhhhcc
Q 015230 181 KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIG 254 (411)
Q Consensus 181 ~~~~~~vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~---~~~~d~~~~sK~~~ 254 (411)
.++++|+ ++.+++++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. .....+ +...++.|+||+++
T Consensus 173 -~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 250 (407)
T 2zc0_A 173 -QKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG 250 (407)
T ss_dssp -CCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC
T ss_pred -CCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC
Confidence 3577764 445566678765 4667999999999999999999999977 54432 112122 23345779999999
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--h--c-CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--K--E-PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
+|+|+||+++++++++.+.. .....+++.++++++++.++++.. + . ++.+++++++.+++.+.|++....
T Consensus 251 ~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-- 325 (407)
T 2zc0_A 251 TGFRIGWIIAEGEILKKVLM---QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPN-- 325 (407)
T ss_dssp TTSCCEEEECCHHHHHHHHH---HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred CCcceEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC--
Confidence 99999999999988887763 222335667889998888888753 2 2 677788888888888888765211
Q ss_pred CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC--------CcceeeecCC-CHHHHHH
Q 015230 330 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------FEAGFTSLAH-SSDDIQH 399 (411)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~--------~~~~~~~~~~-t~~~i~~ 399 (411)
+.......|+++|+++... .+..++.+.|.++ ||.+.++. .+.+|+++.. |++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~ 392 (407)
T 2zc0_A 326 AEFTKPIAGMFVMFFLPEG-------------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPI 392 (407)
T ss_dssp SCBCCCSBSSEEEEECSTT-------------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHH
T ss_pred CEEecCCCcEEEEEEcCCC-------------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHH
Confidence 2111234577888887421 1236788999988 99999863 2457886654 7999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|++++++
T Consensus 393 ~~~~l~~~l~~ 403 (407)
T 2zc0_A 393 GIKKLAKLYKE 403 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=254.51 Aligned_cols=331 Identities=15% Similarity=0.094 Sum_probs=226.4
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCC-----HHHHHHHHHHHhhCC-C--CC-EEEEeCChHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC-----LLENVLAEMVISAVP-S--IE-MVRFVNSGTE 103 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~-~--~~-~v~~~~~g~~ 103 (411)
.+|+.++||.++. .+++ .+|.+++++.++++......|+. ++++.+++++.+.++ . ++ ++++|+|+++
T Consensus 22 ~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 22 ERGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp HTTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred ccCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 4578899999985 3455 68999999999986532233333 455666666655545 2 35 9999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|+..+++.+ ..+++.|++..++||+....+ ...|..+..++. ..++. .|++++++.++ ++
T Consensus 99 a~~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~~~~--~~~~~------------~d~~~l~~~l~---~~ 158 (376)
T 2dou_A 99 GLAHLLLAL--TEPEDLLLLPEVAYPSYFGAA-RVASLRTFLIPL--REDGL------------ADLKAVPEGVW---RE 158 (376)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCHHHHHHH-HHTTCEEEEECB--CTTSS------------BCGGGSCHHHH---HH
T ss_pred HHHHHHHHh--cCCCCEEEECCCCcHhHHHHH-HHcCCEEEEeeC--CCCCC------------CCHHHHHHhhc---cC
Confidence 999999853 335678999999999755443 334444443332 11211 16778888776 35
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccc---cCCCcchhhhhhhcc-CCc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY---FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~---~~~~~d~~~~sK~~~-~G~ 257 (411)
+++++++.++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..+.. ..... .+....+.|+||+++ +|+
T Consensus 159 ~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 237 (376)
T 2dou_A 159 AKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF 237 (376)
T ss_dssp EEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhh
Confidence 77777765566777765 4667999999999999999999999987 54422 11222 233445679999998 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.. .....+++.++++++++.++++...+ ++.+++++++.+++.+.|+++ +.....
T Consensus 238 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~~ 309 (376)
T 2dou_A 238 RLGFALGSEEALARLER---VKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV-----LSLLPP 309 (376)
T ss_dssp CCEEEEECHHHHHHHHH---HHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT-----SEECCC
T ss_pred eeEEEecCHHHHHHHHH---HHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-----cCccCC
Confidence 99999999999888763 22333566788998888887754211 334444555555555555442 211112
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
..|+++|+++.+. .+..++.+.|.++||.+.++. .+.+|+++..+++++++++++|++++
T Consensus 310 ~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 310 RATMYLWGRLPEG-------------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp CBSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CeeEEEEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 3467888887421 113578899999999998863 24589988789999999999998765
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=253.90 Aligned_cols=336 Identities=13% Similarity=0.138 Sum_probs=234.7
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~ 105 (411)
+..++||.++.. ++.++.++++.+++.++++.. ..|+ +..++++.+++++.+.++ .+++|++|+|+++|+
T Consensus 75 ~~~~i~l~~g~p-~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLP-NPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCC-CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCC-CchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 356899988853 233468899999999888762 1232 345777888888866655 478999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH----cCC
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NNK 181 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~ 181 (411)
+.+++++ ..+++.|++..++|++....+ ...|..+..++... .+ .|++++++.++ ..
T Consensus 154 ~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~L~~~l~~~~~~~- 214 (448)
T 3aow_A 154 DLIGRVF--LNPGDIVVVEAPTYLAALQAF-NFYEPQYIQIPLDD-EG--------------MKVEILEEKLKELKSQG- 214 (448)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT-
T ss_pred HHHHHHH--cCCCCEEEEeCCChHHHHHHH-HHcCCEEEEeccCC-CC--------------CCHHHHHHHHhhhhccC-
Confidence 9999864 345688999999999754433 23343333222111 11 18999999987 32
Q ss_pred CcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc----CccccccCCCcchhhhhhhccC
Q 015230 182 GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY----GGAQEYFGVTPDLTTLGKIIGG 255 (411)
Q Consensus 182 ~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~----~~~~~~~~~~~d~~~~sK~~~~ 255 (411)
.++++|++.| .+|++|.+ .+.+.+++|.++|++||++||+||+|+++ ..|. ...++..+..+++.||||.+++
T Consensus 215 ~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~ 293 (448)
T 3aow_A 215 KKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAP 293 (448)
T ss_dssp CCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCG
T ss_pred CCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccc
Confidence 3677876555 44556665 45677999999999999999999999977 4443 2223333445677899999998
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc--CChHHHHHHHHHHHHHHHHHHHHhcC-C
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAG-H 330 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 330 (411)
|+|+||+++++++++.+.. .....+++.++++++++.++++.. .+ +++++.++++.+++.+.|++. .+ .
T Consensus 294 GlriG~v~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g 367 (448)
T 3aow_A 294 GFRIGWMVGDPGIIRKMEI---AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEG 367 (448)
T ss_dssp GGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTT
T ss_pred cccEEEEEeCHHHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence 9999999999999888763 223335677899999888888642 11 344555556666666666653 23 1
Q ss_pred ceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCC-CHHHHHHH
Q 015230 331 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHT 400 (411)
Q Consensus 331 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~-t~~~i~~~ 400 (411)
... ....|+++|+++... .+..++.+.|.++||.+.|+. .+.+|+++.. ++++++++
T Consensus 368 ~~~~~p~~g~~~~v~~~~~-------------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~ 434 (448)
T 3aow_A 368 VKWTKPEGGMFIWVTLPDG-------------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEG 434 (448)
T ss_dssp CEECCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHH
T ss_pred eEEeCCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHH
Confidence 222 234578889988421 123678899999999998863 2457887654 79999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|.+++++
T Consensus 435 ~~~L~~~l~~ 444 (448)
T 3aow_A 435 IKRLAETIKE 444 (448)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-31 Score=254.91 Aligned_cols=352 Identities=13% Similarity=0.089 Sum_probs=241.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.++.++||..+. ..++ .++.+.+++.++++. . ..|+ +..++++++++++.+.++ .+++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGF--FSYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCS--CSSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 567899999885 2334 789999999999875 2 2232 235778889998887765 357899999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC-CCCCCCCCceeecCC-CCHHHHHHHHHcCCCc
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPF-NDVSALENLFENNKGE 183 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~~ 183 (411)
+.+++.+ ..+++.|++.+++|++.... ....|..+..++..... +.. .......+ .|++++++.++ ++
T Consensus 132 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~----~~~~~~~~~~d~~~l~~~l~---~~ 201 (447)
T 3b46_A 132 LSCLMGL--LNAGDEVIVFEPFFDQYIPN-IELCGGKVVYVPINPPKELDQ----RNTRGEEWTIDFEQFEKAIT---SK 201 (447)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEEEECCGGGGT----SCBCSTTSEECHHHHHTTCC---TT
T ss_pred HHHHHHH--cCCCCEEEEeCCCchhHHHH-HHHcCCEEEEEeCCCcccccc----ccccccCcccCHHHHHHhhc---cC
Confidence 9999864 34678899999999975443 34445444443321110 000 00000000 28899988775 46
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC---ccc--cccCCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQ--EYFGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~---~~~--~~~~~~~d~~~~sK~~~-~G 256 (411)
+++|++++++|++|.+. +.+.+++|+++|++||++||+||+|+++ ..|.. ... +..+..+.+.|+||+++ +|
T Consensus 202 ~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred CeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 78887777777778765 4667999999999999999999999987 54421 111 12455666789999999 79
Q ss_pred cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 257 LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 257 ~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
+|+||+++ ++++++.+.. .....+++.++++++++.++++.... ++++++++++.+++.+.|+++ ++.
T Consensus 281 ~riG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 353 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAAK---AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL----GLP 353 (447)
T ss_dssp SCCEEEECSCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----TCC
T ss_pred hhhEEEEeCCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCe
Confidence 99999999 9999888763 22334778899999998888886532 445666777777777777765 443
Q ss_pred eEEeeecceEEEEEecCCCCC---cchhcccchHHHHHHHHHHH-HcCeEeccCC-----------CcceeeecCCCHHH
Q 015230 332 ICGGYISGMFGFFFTEGPVYN---FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDD 396 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----------~~~~~~~~~~t~~~ 396 (411)
......|+++|+++....... +... .....+..++.+.|. ++||.+.|+. .+.+|+++..++++
T Consensus 354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~ 432 (447)
T 3b46_A 354 YTAPEGTYFVLVDFSKVKIPEDYPYPEE-ILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAY 432 (447)
T ss_dssp EECCSBSSEEEEECTTCCCCTTCCCCGG-GSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHH
T ss_pred ecCCCeeEEEEEecccccCccccccccc-cccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHH
Confidence 333455888999885321000 0000 000123457887776 5799998873 34589988889999
Q ss_pred HHHHHHHHHHH
Q 015230 397 IQHTITAAEKV 407 (411)
Q Consensus 397 i~~~i~~l~~~ 407 (411)
+++++++|.+.
T Consensus 433 l~~~~~~l~~~ 443 (447)
T 3b46_A 433 LENAVERLKLL 443 (447)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHHHHHH
Confidence 99999999863
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=257.76 Aligned_cols=355 Identities=10% Similarity=0.094 Sum_probs=231.9
Q ss_pred EEEeecCcEEEecCCC---EEEeccCCccccccCC-CcHHHHHHHHHHHHcC-----CCCCCCCHHHHHHHHHHHhhCCC
Q 015230 21 VFDSVKGSHMWDIDGN---EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPS 91 (411)
Q Consensus 21 ~~~~~~g~~~~~~~g~---~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-----~~~~~~~~~~~~l~~~l~~~~~~ 91 (411)
++..+.|.++.+.+++ .++||.++ ++.++ .+|++++++.+++++. ....+..++++++++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g---~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSC---CTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCc---CCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4566677766544444 59999988 55555 7899999999998853 12234567889999999988762
Q ss_pred ---C-CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 92 ---I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 92 ---~-~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+ +++++|+||++|+..+++.+ ..+++.|++..++|++... .....|..+..++........ ....
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-----~~~~--- 166 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRK-LVEFFEGEMVPVQLDYVSADE-----TRAG--- 166 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEBCCCSSCC-----SSCC---
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHH-HHHHcCCEEEEeecccccccC-----cCCC---
Confidence 3 79999999999999999742 3467789999999886443 333445444333221000000 0000
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccc-----c
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY-----F 240 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~-----~ 240 (411)
-|++++++.++. ++++++++.++|++|.+. +.+.+++|+++|++||+++|+||+|+++ ..|... .... .
T Consensus 167 ~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~ 242 (407)
T 3nra_A 167 LDLTGLEEAFKA---GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA 242 (407)
T ss_dssp BCHHHHHHHHHT---TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCG
T ss_pred cCHHHHHHHHhh---CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccC
Confidence 189999999984 345555555567777665 4556999999999999999999999977 554322 2222 2
Q ss_pred CCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 241 ~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+....+.|+||+++ +|+|+||+++++++++.+.. .....+++.++++++++.++++. .++..++..+..+..++
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~ 317 (407)
T 3nra_A 243 ENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEK---LQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRD 317 (407)
T ss_dssp GGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHH---HHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHH
T ss_pred CcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHH---HHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHH
Confidence 22344669999999 79999999999999888763 22334566678877777666542 12333333333334444
Q ss_pred HHHHHHHhcCCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecC
Q 015230 320 GIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLA 391 (411)
Q Consensus 320 ~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~ 391 (411)
.+.+...+.+.... ....|+++++.+.... .+..++.+.|.+ +||++.++. ...+|+++.
T Consensus 318 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 385 (407)
T 3nra_A 318 ELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS 385 (407)
T ss_dssp HHHHHHHTSTTCBCCCCSBSSEECCBCCCBS------------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred HHHHHHhcCCCceeccCCeeEEEEEeCCCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence 44433333332222 2334677777764311 123678888865 599998863 345899888
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
.+++++++++++|++++++
T Consensus 386 ~~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 386 QDHEAAVAAARRIVTLVER 404 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=250.20 Aligned_cols=326 Identities=13% Similarity=0.081 Sum_probs=232.8
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~ 112 (411)
.+.++||.++. ++++ .+|++++++.+.++......|+.....++.+++++.++ ..+++++|+|+++|+..+++.+
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~ 105 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA 105 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH
Confidence 36789999884 4444 78999999999988522233343345677777777765 3579999999999999999853
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++..++|++....+. ..|..+..++......+ |++++++.++.+ ++++|+++.+
T Consensus 106 --~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~--------------d~~~l~~~l~~~--~~~~v~~~~~ 166 (367)
T 3euc_A 106 --ARPGAKVMAPVPGFVMYAMSAQ-FAGLEFVGVPLRADFTL--------------DRGAMLAAMAEH--QPAIVYLAYP 166 (367)
T ss_dssp --CCTTCEEEEEESCSCCSCHHHH-TTTCEEEEEECCTTSCC--------------CHHHHHHHHHHH--CCSEEEEESS
T ss_pred --cCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEecCCCCCCC--------------CHHHHHHHhhcc--CCCEEEEcCC
Confidence 3456889999999998655433 33443333332211111 899999999852 4567777666
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHh--CCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 269 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~ 269 (411)
+|++|.+.+ .+.+++|.++|++| |+++|+||+|++| ..+.....+..+..+++.|+||+..+|+|+||++++++++
T Consensus 167 ~nptG~~~~-~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~ 245 (367)
T 3euc_A 167 NNPTGNLFD-AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWL 245 (367)
T ss_dssp CTTTCCCCC-HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHH
T ss_pred CCCCCCCCC-HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHH
Confidence 777787664 44499999999999 9999999999987 4443333344444566779999933689999999999999
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecC
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 348 (411)
+.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|++ .+......+.|.++++.+.
T Consensus 246 ~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~~~~~~-- 314 (367)
T 3euc_A 246 EQLDKV-----RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA----HGGVTVFPSAANFLLARVP-- 314 (367)
T ss_dssp HHHGGG-----CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT----STTCEECCCSSSEEEEECS--
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECCCCCeEEEEECC--
Confidence 888742 23567899999999888865221 44555566666666666654 3333344556888888773
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+..++.+.|.++||.+.++.. +.+|+++. +++++++++++|+++++
T Consensus 315 --------------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 --------------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp --------------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred --------------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 126788889999999998753 45788866 99999999999998865
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=249.75 Aligned_cols=320 Identities=15% Similarity=0.135 Sum_probs=232.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|+.++||.++. .++++ +|.+++++.+.++... .|+ +..++++.+++++.+.++ .++++++|+||++|+.
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 477899999885 34554 7899999999987632 332 245778899998887654 5689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+ ..+++.|++.+++|++....+ ...|.. +..++ .|++++++.++. ++++
T Consensus 104 ~~~~~~--~~~gd~vl~~~p~~~~~~~~~-~~~g~~-------------------~~~v~-~d~~~l~~~l~~---~~~~ 157 (370)
T 2z61_A 104 FALSSI--IDDGDEVLIQNPCYPCYKNFI-RFLGAK-------------------PVFCD-FTVESLEEALSD---KTKA 157 (370)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHHH-HHTTCE-------------------EEEEC-SSHHHHHHHCCS---SEEE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHHHHH-HHcCCE-------------------EEEeC-CCHHHHHHhccc---CceE
Confidence 999864 345678999999999754433 233332 22222 389999988863 5777
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc----CCCcchhhhhhhcc-CCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~----~~~~d~~~~sK~~~-~G~~~g 260 (411)
+++++++|++|.+.+ .+ |.++|++||+++|+||+|+++ ..|.......+ +....+.|+||+++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 777777777888887 66 999999999999999999977 54432222221 22333568999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
|+++++++++.+.. .....+++.++++++++.++++. ... ++++++++++.+++.+.|+++ ++.......
T Consensus 233 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 305 (370)
T 2z61_A 233 YVISNDEIIEAILK---LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIG 305 (370)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCB
T ss_pred EEEECHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCc
Confidence 99999998888763 22334667889999988888764 222 556677778888888888765 222222334
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
|+++|+++.. +..++.+.|. ++||.+.++. .+.+|+++.++++++++++++|.++++
T Consensus 306 ~~~~~~~~~~---------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 306 AYYVFPNIGE---------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp TTEECCBCSS---------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCC---------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 6677776632 1367888887 7899998863 346899888999999999999999875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=242.85 Aligned_cols=333 Identities=13% Similarity=0.062 Sum_probs=239.8
Q ss_pred cCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 26 ~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
.+...++.+|+.++||.++. ++++ .+|++++++.++++.. ..|+.....++.+++++.++ .++++++|+|+++|
T Consensus 6 ~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a 80 (354)
T 3ly1_A 6 ESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA--NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEG 80 (354)
T ss_dssp ---CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT--TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHH
T ss_pred ccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC--cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHH
Confidence 35566778899999999985 4444 8899999999998863 34466667899999999987 68899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.+ ..+++.|++..++|++... .....|..+..++.....++ |++++++.++++ +++
T Consensus 81 ~~~~~~~l--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~l~~~-~~~ 142 (354)
T 3ly1_A 81 IRAAIEAY--ASLEAQLVIPELTYGDGEH-FAKIAGMKVTKVKMLDNWAF--------------DIEGLKAAVAAY-SGP 142 (354)
T ss_dssp HHHHHHHH--CCTTCEEEEESSSCTHHHH-HHHHTTCEEEEECCCTTSCC--------------CHHHHHHHHHTC-SSC
T ss_pred HHHHHHHH--hCCCCeEEECCCCchHHHH-HHHHcCCEEEEecCCCCCCC--------------CHHHHHHHhccC-CCC
Confidence 99999853 3456789999999886543 33344544444333211111 899999999853 256
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc---ccc-CCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EYF-GVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~---~~~-~~~~d~~~~sK~~~-~G~ 257 (411)
++|+++.++|++|.+.+ .+.+++|+++| +||+++|+||+|+++ ..+.. ... +.. +....+.|+||+++ +|+
T Consensus 143 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 220 (354)
T 3ly1_A 143 SIVYLVNPNNPTGTITP-ADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGM 220 (354)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG
T ss_pred CEEEEeCCCCCcCCCcC-HHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhh
Confidence 77777666777787776 33366666666 699999999999987 54421 111 122 33355668999998 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
|+||+++++++++.+.... ..++.++++++++.++++.... ++.+++++++.+++.+.|+++ ++.. ..+
T Consensus 221 r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~-~~~ 290 (354)
T 3ly1_A 221 RVGYAVAHPTVIALMGRYV-----AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----KLPY-LPS 290 (354)
T ss_dssp CCEEEECCHHHHHHHGGGT-----TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCC
T ss_pred hheeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCeE-CCC
Confidence 9999999999999887422 2367889999998888764322 555667777777777777765 3222 245
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.|.++++++.. +..++.+.|.++||.+. +. ...+|+++. +++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~---------------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 291 EGNFVFHQLVV---------------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CSSEEEEECSS---------------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCC---------------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 68888887742 13678899999999998 43 245788866 899999999999998864
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=251.26 Aligned_cols=338 Identities=13% Similarity=0.135 Sum_probs=236.2
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.+|+.++||.++. .+++ .+|.+.+++.+.++.. ..|+ +..++++.+++++.+.++ .++++++|+||++|+
T Consensus 27 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 3678899999885 3344 6889999999998763 2332 246678888888887654 568999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.+ ..+++.|++.+++|++... .....|..+..++.....++. -|++++++.++ ++++
T Consensus 104 ~~~~~~~--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~ 165 (388)
T 1j32_A 104 FNLMLAM--IEPGDEVIIPAPFWVSYPE-MVKLAEGTPVILPTTVETQFK------------VSPEQIRQAIT---PKTK 165 (388)
T ss_dssp HHHHHHH--CCTTCEEEEESSCCTHHHH-HHHHTTCEEEEECCCGGGTTC------------CCHHHHHHHCC---TTEE
T ss_pred HHHHHHh--cCCCCEEEEcCCCChhHHH-HHHHcCCEEEEecCCcccCCC------------CCHHHHHHhcC---cCce
Confidence 9999864 3456789999999987543 333445444443322111110 18899998886 3577
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC----ccccc--cCCCcchhhhhhhcc-CCc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEY--FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~----~~~~~--~~~~~d~~~~sK~~~-~G~ 257 (411)
+|++++++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+.. ..++. .+..+++.|+||+++ +|+
T Consensus 166 ~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 166 LLVFNTPSNPTGMVYT-PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred EEEEeCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 7777777777887754 566999999999999999999999987 44421 11111 334556779999998 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.. .....+++.++++++++.++++...+ ++++++++++.+++.+.|+++ . ++.....
T Consensus 245 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~ 318 (388)
T 1j32_A 245 RVGFLAGPVPLVKAATK---IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM-P--GLECPKP 318 (388)
T ss_dssp CCEEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC-T--TCBCCCC
T ss_pred ceEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCC
Confidence 99999999998887763 22344677888999888888763221 345556666666666666553 1 2222222
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..|+++|+++... ..+..++.+.|.+ +||.+.++. .+.+|+++.++++++++++++|++++++
T Consensus 319 ~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 319 DGAFYMFPSIAKT------------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CBTTEECCBCGGG------------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCCC------------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 3455666655321 1123678888876 699998863 3568998888999999999999998875
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-34 Score=271.80 Aligned_cols=354 Identities=11% Similarity=0.013 Sum_probs=241.1
Q ss_pred CCCeEEEeecCcEEEecCCC--EEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC-CCCHHHHHHHHHHHhhCC-
Q 015230 17 GQPIVFDSVKGSHMWDIDGN--EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 90 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~--~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~-~~~~~~~~l~~~l~~~~~- 90 (411)
++.++..+++|+++||.+|+ .++||..+ .+ ++ .+|++++++.+++.... .|. ...++++++++++.+.++
T Consensus 10 ~~~~~~~~~~g~~~~d~~g~~~~~i~l~~~---~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~ 85 (392)
T 3b1d_A 10 FQTAPNRLSHHTYKWKETETDPQLLPAWIA---DM-DFEVMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQY 85 (392)
Confidence 44667788999999999999 99999887 33 33 78899999999887531 221 135667777777766654
Q ss_pred --CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 91 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 91 --~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
..++|++|+|+++|+..+++.+ ..+++.|++..++||+....+. ..|..+..++.....+ .+. .
T Consensus 86 ~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g--------~~~---~ 151 (392)
T 3b1d_A 86 SFDKEDIVFVEGVVPAISIAIQAF--TKEGEAVLINSPVYPPFARSVR-LNNRKLVSNSLKEENG--------LFQ---I 151 (392)
Confidence 4689999999999999999854 3456789999999998665433 2333333322211111 000 1
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc----Cccccc--cC
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY----GGAQEY--FG 241 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~----~~~~~~--~~ 241 (411)
|++++++.+++ .++++++++..++++|.+.+ .+++++|+++|++||+++|+||+|+++ +.|. ....+. .+
T Consensus 152 d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 228 (392)
T 3b1d_A 152 DFEQLENDIVE--NDVKLYLLCNPHNPGGRVWE-REVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKD 228 (392)
Confidence 77888888763 24566766666667776644 445999999999999999999999988 5542 222221 34
Q ss_pred CCcchhhhhhhcc-CCcccccccccH-HHHHHhcCCCCcccccC-CCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 015230 242 VTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGT-LSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 316 (411)
Q Consensus 242 ~~~d~~~~sK~~~-~G~~~g~~~~~~-~~~~~~~~~~~~~~~~t-~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~ 316 (411)
..+++.|+||+++ +|+|+||+++++ ++++.+.... ...+ .+.++++++++.++++...+ ++++++++++.++
T Consensus 229 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (392)
T 3b1d_A 229 FALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ---LVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQF 305 (392)
Confidence 4566789999998 899999998864 4887776422 1122 24578888888888764222 4556666667777
Q ss_pred HHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------Ccceee
Q 015230 317 LTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFT 388 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~ 388 (411)
+.+.|++. .+......+ .++++|+++... ..+..++.+.|. ++||++.++. .+.+|+
T Consensus 306 l~~~l~~~---~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi 370 (392)
T 3b1d_A 306 AVEYFAQE---APRLKVMKPQGTYLIWLDFSDY------------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARL 370 (392)
Confidence 76666652 122222233 355556777421 112357888886 7899999863 235888
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q 015230 389 SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~ 409 (411)
++..+++++++++++|+++++
T Consensus 371 ~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 371 NIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 888889999999999998875
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-32 Score=253.81 Aligned_cols=328 Identities=12% Similarity=-0.004 Sum_probs=226.1
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.+| .++||.++. ++++ .+|.+++++.+.+.....|+ +..++++++++++.+.++ .++++++|+|+++++.
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 466 889999885 4444 68999999998875533343 246788999999988775 5789999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+...++++.|++..++|++.... ....|..+..++.....++ ++ ++++.+.. ++++
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~--------------~~-~l~~~~~~---~~~~ 157 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGA-AKFIKAKSLLMPLTKENDF--------------TP-SLNEKELQ---EVDL 157 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHH-HHHTTCEEEEEECCGGGTS--------------CC-CCCHHHHH---HCSE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHH-HHHcCCEEEEcccCCCCCc--------------ch-hHHhhhcc---CCCE
Confidence 9998642211168899999999965443 3334444443332211121 11 34445542 3456
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc-c--------ccCCCcchhhhhhhcc-C
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-E--------YFGVTPDLTTLGKIIG-G 255 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~-~--------~~~~~~d~~~~sK~~~-~ 255 (411)
++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+..... . ..+..+.+.|+||+++ +
T Consensus 158 v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 158 VILNSPNNPTGRTLS-LEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEEcCCCCCcCCCCC-HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 666555666777664 455999999999999999999999988 55532221 1 2344456779999997 7
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+|+||+++++++++.+.. .....+++.++++++++.++++. .+..++.++..+..++.+.+... ++. ..
T Consensus 237 G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~ 306 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKA---FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NTL--IY 306 (376)
T ss_dssp GGCCEEEEECHHHHHHHHH---HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TCC--CC
T ss_pred cceeEEEeeCHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC
Confidence 9999999999999888763 22344678899999998888763 22233333333333343333322 222 34
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
..|+++|+++. +..++.+.|.+ +||.+.++. .+.+|+++..|++++++++++|++
T Consensus 307 ~~~~~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 307 PYSFYVYLPVQ----------------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIET 370 (376)
T ss_dssp SBSSEEEEECS----------------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcceEEEEECC----------------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 56888888873 12678888887 899998752 345789887799999999999999
Q ss_pred HHHh
Q 015230 407 VLRQ 410 (411)
Q Consensus 407 ~~~~ 410 (411)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8865
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=252.12 Aligned_cols=334 Identities=12% Similarity=0.077 Sum_probs=234.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC-C--C-CEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP-S--I-EMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~-~--~-~~v~~~~~g~~a 104 (411)
.|++++||.++. .+++ .+|.+++++.++++.. ..|. +..++++.+++++.+.++ . + ++|++|+|+++|
T Consensus 45 ~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGI--PDGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCS--CSSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 467899999885 3455 6889999999987541 1222 346778888888877665 2 3 799999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++.+++.+ ..+++.|++..++|++....+ ...|..+..++... .++. .|++++++.++ +++
T Consensus 122 l~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~~~------------~d~~~l~~~l~---~~~ 182 (404)
T 2o1b_A 122 LVAVPTCV--INPGDYVLLPDPGYTDYLAGV-LLADGKPVPLNLEP-PHYL------------PDWSKVDSQII---DKT 182 (404)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCSSHHHHH-HHTTCEEEEEECCT-TTCC------------CCGGGSCHHHH---HHE
T ss_pred HHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHCCCEEEEeccCc-ccCc------------CCHHHHHHhhc---cCc
Confidence 99999853 345688999999999865443 34454444433221 1211 16788888876 357
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccc---cCCCcchhhhhhhcc-CCcc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY---FGVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~---~~~~~d~~~~sK~~~-~G~~ 258 (411)
++|+++..+|++|.+. +.+++++|.++|++||++||+||+|+++ ..|... .... .+....+.|+||+++ +|+|
T Consensus 183 ~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 261 (404)
T 2o1b_A 183 KLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFR 261 (404)
T ss_dssp EEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGC
T ss_pred eEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhh
Confidence 7777776666677765 5666999999999999999999999987 444211 1111 122344669999998 7999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+||+++++++++.+.. .....+++.++++++++.++++..+. ++.+++++++.+++.+.|+++ ++......
T Consensus 262 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 334 (404)
T 2o1b_A 262 VGFAVGNKDMIQALKK---YQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----DLPFVHAK 334 (404)
T ss_dssp CEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCC
T ss_pred eEeEecCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCeecCCC
Confidence 9999999999888763 22334677889999998888875322 455566667777777777664 33322233
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.|+++|+++... .+..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|.++++
T Consensus 335 ~g~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 335 GGIYVWLETPPG-------------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp BSSEEEEECCTT-------------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred cceEEEEeCCCC-------------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 466788887421 11256778776 5799999863 345899877789999999999998876
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 402 ~ 402 (404)
T 2o1b_A 402 L 402 (404)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=254.11 Aligned_cols=339 Identities=13% Similarity=0.108 Sum_probs=229.9
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 103 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~ 103 (411)
.+|++++||.++. .+++ .+|.+++++.++++... .|+ +..++++.+++++.+.++ .+ +++++|+||++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 4688999999985 3455 78999999998887531 222 235677888888876554 35 69999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|+..+++.+ ..+++.|++..++||+....+. ..|..+..++.....++. .|++++++.++ ++
T Consensus 111 a~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~------------~d~~~l~~~i~---~~ 172 (412)
T 2x5d_A 111 GLAHLMLAT--LDHGDTILVPNPSYPIHIYGAV-IAGAQVRSVPLVPGIDFF------------NELERAIRESI---PK 172 (412)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-HHTCEEEEEECSTTSCHH------------HHHHHHHHTEE---SC
T ss_pred HHHHHHHHh--CCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCCccCCC------------CCHHHHHHhcc---cC
Confidence 999999853 3456789999999997554433 344433332221110110 15677777665 24
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccc-ccc---cCCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGA-QEY---FGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~-~~~---~~~~~d~~~~sK~~~-~G 256 (411)
+++|+++.++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..|. ... ... .+....+.|+||+++ +|
T Consensus 173 ~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 173 PRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp CSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred ceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 55555544455667654 4566999999999999999999999987 5442 111 111 233344679999998 89
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+|+||+++++++++.+.. .....+++.++++++++.++++..++ ++++++++++.+++.+.|+++ ++....
T Consensus 252 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 324 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALAR---IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA----GWMVEN 324 (412)
T ss_dssp SCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH----TCCCCC
T ss_pred cceEEEEcCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecC
Confidence 999999999999888763 22334678899999998888864322 455667777777777777765 322222
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
...|+++|+++... . . ..+..++.+.|.+ +||.+.++. .+.+|+++..+++++++++++|.++
T Consensus 325 ~~~g~~~~~~~~~~-~--------~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 325 PKASMYVWAKIPEP-Y--------A-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAM 394 (412)
T ss_dssp CSBSSEEEEECCTT-T--------G-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCCc-c--------C-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 33467888887421 0 0 0123578888865 699998863 2458998777999999999999998
Q ss_pred HHh
Q 015230 408 LRQ 410 (411)
Q Consensus 408 ~~~ 410 (411)
+++
T Consensus 395 l~~ 397 (412)
T 2x5d_A 395 FRA 397 (412)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=246.56 Aligned_cols=334 Identities=14% Similarity=0.121 Sum_probs=233.9
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCE-EEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~-v~~~~~g~~a~~~ 107 (411)
..++||.++. .+++ .+|++.+++.++++... .|+ +..++++.+++++.+.++ .+++ +++|+||++|+..
T Consensus 26 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 4678998885 3344 68999999999987642 232 245778888888877654 4678 9999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.+ ..+++.|++.+++||+.... ....|..+..++.....++. -|++++++.++. +++++
T Consensus 103 ~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~~---~~~~v 164 (389)
T 1gd9_A 103 GLSAF--LKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDEFR------------LNVDELKKYVTD---KTRAL 164 (389)
T ss_dssp HHTTT--CCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGTTC------------CCHHHHHHHCCT---TEEEE
T ss_pred HHHHh--CCCCCEEEEcCCCchhHHHH-HHHCCCEEEEeccCCccCCC------------CCHHHHHHhcCc---CceEE
Confidence 99743 34568899999999985543 34445544443322111110 188999988863 56777
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccccc-C-CCcc--hhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-G-VTPD--LTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~-~-~~~d--~~~~sK~~~-~G~~~g 260 (411)
++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..|. ......+ + ...| +.|+||+++ +|+|+|
T Consensus 165 ~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 165 IINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred EEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 7766677777664 4666999999999999999999999987 5443 2222122 1 1223 568999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
|+++++++++.+.. .....+++.++++++++.++++.... ++++++++++.+++.+.|+++ ++......
T Consensus 244 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 316 (389)
T 1gd9_A 244 FVAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVKPK 316 (389)
T ss_dssp EEECCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCCC
T ss_pred EEEECHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCC
Confidence 99999998888763 22334677888999888888764322 445566667777777777664 32222233
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.|+++|+++... ..+..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|.++++
T Consensus 317 ~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~ 384 (389)
T 1gd9_A 317 GAFYIFPRIRDT------------GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLK 384 (389)
T ss_dssp BTTEECCBCGGG------------TCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEeccCC------------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 466777766321 112367888887 8899998863 346899887899999999999999887
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 385 ~ 385 (389)
T 1gd9_A 385 E 385 (389)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=246.15 Aligned_cols=330 Identities=13% Similarity=0.091 Sum_probs=234.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-----CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-----~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ 102 (411)
+++.++||.++ ++....+|.+++++.++++.. ..|+ +..++++++++++.+.++ .+++|++|+|++
T Consensus 33 ~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~ 109 (398)
T 3ele_A 33 GKENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109 (398)
T ss_dssp CGGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred CCCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence 35678999988 444347899999999998763 2232 235788899999987765 578999999999
Q ss_pred HHHHHHHHHHHhccCC-cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 103 EACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+|+..+++.+ ..++ +.|++.+++|++.... ....|..+..++.... .++ |++++++.++
T Consensus 110 ~al~~~~~~l--~~~g~d~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~-- 170 (398)
T 3ele_A 110 ASLSICFRAL--TSDAYDEFITIAPYFPEYKVF-VNAAGARLVEVPADTEHFQI--------------DFDALEERIN-- 170 (398)
T ss_dssp HHHHHHHHHH--CCSTTCEEEEESSCCTHHHHH-HHHTTCEEEEECCCTTTSSC--------------CHHHHHHTCC--
T ss_pred HHHHHHHHHH--cCCCCCEEEEeCCCchhhHHH-HHHcCCEEEEEecCCcCCcC--------------CHHHHHHHhC--
Confidence 9999999854 3455 7899999999875433 3344554444333211 111 8899998876
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH------hCCEEEEecccccc-ccccC--ccccccCCCcchhhhhh
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGK 251 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~------~~~~li~De~~~g~-~~g~~--~~~~~~~~~~d~~~~sK 251 (411)
+++++++++.++|++|.+.+ .+.+++|.++|++ ||+++|+||+|++| ..|.. ...+..+....+.|+||
T Consensus 171 -~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 248 (398)
T 3ele_A 171 -AHTRGVIINSPNNPSGTVYS-EETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSK 248 (398)
T ss_dssp -TTEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTT
T ss_pred -cCCCEEEEcCCCCCCCCCCC-HHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhh
Confidence 35777777666777777665 4449999999999 99999999999988 55522 22233344455679999
Q ss_pred hcc-CCcccccccccHHH------HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 252 IIG-GGLPVGAYGGRRDI------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 252 ~~~-~G~~~g~~~~~~~~------~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+++ +|+|+||+++++++ .+.+... .....+++.++++++++.+.++ ....+++++++.+++.+.|+++
T Consensus 249 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~ 323 (398)
T 3ele_A 249 SLSLPGERIGYVLVPDEVYDKAELYAAVCGA--GRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI 323 (398)
T ss_dssp TSSCTTTCCEEEECCTTSTTHHHHHHHHHHH--HHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccceeEEEEEcchhhhHHHHHHHHHHH--hhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc
Confidence 999 89999999887763 2222210 0112255667777777655443 4456788999999999999886
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~ 400 (411)
++.......|+++|+++... +..++.+.|.++||.+.++. .+.+|+++.+++++++++
T Consensus 324 ----g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~ 385 (398)
T 3ele_A 324 ----GYHCFKPDGAFYMFVKALED--------------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHS 385 (398)
T ss_dssp ----TCCEECCSBSSEEEEECSSS--------------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHH
T ss_pred ----CCeecCCCeeEEEEEEcCCC--------------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHH
Confidence 33333334466688877321 13678888999999999874 346899888999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|.+++++
T Consensus 386 l~~l~~~l~~ 395 (398)
T 3ele_A 386 MPAFEKIYKK 395 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=247.03 Aligned_cols=334 Identities=15% Similarity=0.110 Sum_probs=229.1
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.+|+.++||.++. .+++ .+|++++++.+++++. ..|. +..++++++++++.+.++ .+++|++|+||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 4788999999985 3344 4888999999988763 2232 245778888888877654 578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.. ..+++.|++..++|++.... ....|..+..++.....++. -|++++++. +++
T Consensus 105 ~~~~~~l--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~------~~~ 163 (391)
T 3h14_A 105 LLAFTAL--FDSGDRVGIGAPGYPSYRQI-LRALGLVPVDLPTAPENRLQ------------PVPADFAGL------DLA 163 (391)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHHTTCEEEEEECCGGGTTS------------CCHHHHTTS------CCS
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHHH-HHHcCCEEEEeecCcccCCC------------CCHHHHHhc------CCe
Confidence 9999853 34568899999999875433 33344433333222111111 077777654 355
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccCCCcchhhhhhhcc-CCcccccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~~~~d~~~~sK~~~-~G~~~g~~ 262 (411)
+|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+.. ...+..+....+.|+||.++ +|+|+||+
T Consensus 164 ~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 242 (391)
T 3h14_A 164 GLMVASPANPTGTMLD-HAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWM 242 (391)
T ss_dssp EEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEE
T ss_pred EEEECCCCCCCCccCC-HHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEE
Confidence 6666666777777665 445999999999999999999999988 55532 22222223334558999998 89999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecce
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGM 340 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~ 340 (411)
++++++++.+.. .....+++.++++++++.++++.... ++.+++++++.+++.+.|+++ +..... ...|++
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~ 315 (391)
T 3h14_A 243 VVPEDQVRVVER---IAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA----GFTRIAPPDGAFY 315 (391)
T ss_dssp ECCGGGHHHHHH---HHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCBCCCCBTTE
T ss_pred EeCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCCcccCCCeeEE
Confidence 999888887763 22344678889998888887761111 445566666666666666654 433322 234577
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC-------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~-------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++++.... .+..++.+.|.++ ||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 316 ~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 316 VYADVSDLT------------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp EEEECTTTC------------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccC------------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 888774211 1236788887775 99998863 2358998888999999999999998875
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=247.17 Aligned_cols=332 Identities=16% Similarity=0.164 Sum_probs=235.2
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|+.++||.++. .+++ .+|.+++++.+.++... .|+ +..++++++++++.+.++ .++++++|+||++|+.
T Consensus 39 ~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGE--PDFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 577899999885 3455 47899999999987632 332 236678888888877554 5689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+ ..+++.|++.+++|++.... ....|..+..++.....++. -|++++++.++. ++++
T Consensus 116 ~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~~---~~~~ 177 (389)
T 1o4s_A 116 NAFMAL--LDPGDEVIVFSPVWVSYIPQ-IILAGGTVNVVETFMSKNFQ------------PSLEEVEGLLVG---KTKA 177 (389)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECCGGGTTC------------CCHHHHHHTCCT---TEEE
T ss_pred HHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEEecCCccCCC------------CCHHHHHHhccc---CceE
Confidence 999864 34567899999999975443 33444443333222101110 178999888763 5777
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc----cCCCcchhhhhhhcc-CCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY----FGVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~----~~~~~d~~~~sK~~~-~G~~~g 260 (411)
|++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..|....... .+.+..+.|+||+++ +|+|+|
T Consensus 178 v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 256 (389)
T 1o4s_A 178 VLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG 256 (389)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceE
Confidence 77776677778765 4566999999999999999999999977 4442211111 223333568999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecce
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 340 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 340 (411)
|+++++++++.+.. .....+++.+++++.++.++++.. .++++++++++.+++.+.|+++ .+... ....|++
T Consensus 257 ~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~ 328 (389)
T 1o4s_A 257 YLISSEKVATAVSK---IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAFY 328 (389)
T ss_dssp EEECCHHHHHHHHH---HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSSE
T ss_pred EEEeCHHHHHHHHH---HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcceE
Confidence 99999998887763 223346777888888877776432 2556777888888888888775 22222 2334667
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+.+. . +..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|.+++++
T Consensus 329 ~~~~~~-~--------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 329 LFFKVR-G--------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp EEEECS-S--------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred EEEeCC-C--------------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 787763 0 1257888887 8899998874 2468998778999999999999998764
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=243.77 Aligned_cols=320 Identities=12% Similarity=0.054 Sum_probs=223.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
+++.++||.++. ++++ .+|++++++.+.++... .|+.....++.+++++.++ .++++++|+||++|++.+++..
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~--~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~ 104 (363)
T 3ffh_A 30 GLTKITKLSSNE--NPLG-TSKKVAAIQANSSVETE--IYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL 104 (363)
T ss_dssp TCSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCC--BC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhh--cCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH
Confidence 346889999984 4444 78999999988776532 3344445677777777776 6789999999999999999853
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++..++|++.... ....|..+..++......+ |++++++.++ +++++++++++
T Consensus 105 --~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~---~~~~~v~~~~p 164 (363)
T 3ffh_A 105 --LDTTTNTVMATPTFVQYRQN-ALIEGAEVREIPLLQDGEH--------------DLEGMLNAID---EKTTIVWICNP 164 (363)
T ss_dssp --CSTTCEEEEEESSCHHHHHH-HHHHTCEEEEEECCTTSCC--------------CHHHHHHHCC---TTEEEEEEESS
T ss_pred --ccCCCEEEEcCCChHHHHHH-HHHcCCEEEEecCCCCCCc--------------CHHHHHHhcc---cCCCEEEEeCC
Confidence 45678999999999874433 3344554444333221111 8999998886 36788887777
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHh--CCEEEEecccccc-ccccCccccccCCCcc----hhhhhhhcc-CCcccccccc
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVGAYGG 264 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~-~~g~~~~~~~~~~~~d----~~~~sK~~~-~G~~~g~~~~ 264 (411)
++++|.+.+ .+++.++|+.+ |+++|+||+|++| + +...........++ +.|+||.++ +|+|+||+++
T Consensus 165 ~nptG~~~~----~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 239 (363)
T 3ffh_A 165 NNPTGNYIE----LADIQAFLDRVPSDVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA 239 (363)
T ss_dssp CTTTCCCCC----HHHHHHHHTTSCTTSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE
T ss_pred CCCcCCCcC----HHHHHHHHHhCCCCcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeec
Confidence 888888877 44555555444 9999999999988 6 43222111111222 568999998 7999999999
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+.... .+++.++++++++.++++.... ++.+++++++.+++.+.|++. .......+.|.++++
T Consensus 240 ~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~~~~~ 310 (363)
T 3ffh_A 240 DKEIIRQLNIVR-----PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF----EKVKLYPANGNFVLI 310 (363)
T ss_dssp CHHHHHHHHHTC-----CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC----TTCEECCCCSSEEEE
T ss_pred CHHHHHHHHHhC-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC----CCceECCCCCeEEEE
Confidence 999998887422 2678899999999988863221 444555666666666666552 222333556888888
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
++.. +..++.+.|.++||.+.++. .+.+|+++. |++++++++++|++++
T Consensus 311 ~~~~---------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 311 DLGI---------------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ECSS---------------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ECCC---------------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 7732 13678999999999999875 345788866 9999999999998763
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=243.25 Aligned_cols=330 Identities=15% Similarity=0.107 Sum_probs=231.6
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~ 107 (411)
..++||.++. .+++ .+|.+++++.++++.. ..|. +..++++++++++.+.++ .++ ++++|+|+++|+..
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 3578998884 2345 7899999999998763 2332 246678888888877654 467 99999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.+ ..+++.|++.+++|++... .....|..+..++....... .|++++++.++ ++++++
T Consensus 107 ~~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~l~---~~~~~v 167 (386)
T 1u08_A 107 AITAL--VRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHFR-------------VDWQEFAALLS---ERTRLV 167 (386)
T ss_dssp HHHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTCC-------------CCHHHHHHHCC---TTEEEE
T ss_pred HHHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEeecCcccCc-------------CCHHHHHHhhc---ccCEEE
Confidence 99854 3456889999999997544 33344544443332211010 18999998885 367777
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc----Ccccc-ccCCCcchhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY----GGAQE-YFGVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~----~~~~~-~~~~~~d~~~~sK~~~-~G~~~g 260 (411)
++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..|. ....+ ..+..+.+.|+||+++ +|+|+|
T Consensus 168 ~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 246 (386)
T 1u08_A 168 ILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVG 246 (386)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCE
T ss_pred EEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceE
Confidence 7777777778765 4566999999999999999999999987 5442 11121 2345556779999999 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 338 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 338 (411)
|+++++++++.+.. .....+++.++++++++.++++.... ++++++++++.+++.+.|+++ ++.......|
T Consensus 247 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g 319 (386)
T 1u08_A 247 YCVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES----RLEILPCEGT 319 (386)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS----SCEECCCCBS
T ss_pred EEEcCHHHHHHHHH---HHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCce
Confidence 99999998887763 22334677888888888888875422 456666666666666666543 3332223347
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
+++|+++.... ..+..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|++
T Consensus 320 ~~~~~~~~~~~-----------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 320 YFLLVDYSAVS-----------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp SEEEEECTTTC-----------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEEecCCCC-----------CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 78888874310 011256777776 6799998763 245899888899999999999864
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=240.48 Aligned_cols=357 Identities=13% Similarity=0.082 Sum_probs=235.5
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCC---CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEA 104 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~---~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~a 104 (411)
+..++||..+. ..++ .+|.+++++.++++... .|. +..++++.+++++.+.++ .+ ++|++|+||++|
T Consensus 27 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 27 EHDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp TSCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred cCCceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 45789999884 2222 78999999999988632 332 235778899999987665 23 689999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC---CCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
+..+++.+ ..+++.|++..++|++... .....|..+..++... ..|.... ...+. -|++++++.++
T Consensus 104 ~~~~~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~G~~~~--~~~~~---~d~~~l~~~~~--- 172 (422)
T 3fvs_A 104 LFTAFQAL--VDEGDEVIIIEPFFDCYEP-MTMMAGGRPVFVSLKPGPIQNGELGS--SSNWQ---LDPMELAGKFT--- 172 (422)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECBCCCCCSSSCCB--GGGSB---CCHHHHHTTCC---
T ss_pred HHHHHHHH--cCCCCEEEEcCCCchhhHH-HHHHcCCEEEEEeccccccccccccc--ccCCC---CCHHHHHhhcC---
Confidence 99999853 4567789999999997543 3334454444433221 0110000 00001 17888888775
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc----CCCcchhhhhhhcc-
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG- 254 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~----~~~~d~~~~sK~~~- 254 (411)
++++++++++++|++|.+. +++.+++|+++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||.++
T Consensus 173 ~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~ 251 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA 251 (422)
T ss_dssp TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTC
T ss_pred CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCC
Confidence 3677777777777788776 4556999999999999999999999987 55531 111112 22345668999998
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-----KEPGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
+|+|+||+++++++++.+.. .....+++.++++++++.++++.. ..++..++.++..+..++.+.+...+.+
T Consensus 252 ~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 328 (422)
T 3fvs_A 252 TGWKVGWVLGPDHIMKHLRT---VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG 328 (422)
T ss_dssp GGGCCEEEECCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccceEEEEEeCHHHHHHHHH---HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 79999999999998887762 234457788999999999888751 1133333444444444444433333335
Q ss_pred CceEEeeecceEEEEEecCCC--CCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----------CcceeeecCCCHH
Q 015230 330 HAICGGYISGMFGFFFTEGPV--YNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------FEAGFTSLAHSSD 395 (411)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~-----------~~~~~~~~~~t~~ 395 (411)
+.......|+++|+++..... ..+. .........++.+.+ .++||.+.++. .+.+|+++..+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e 406 (422)
T 3fvs_A 329 LKPIIPQGSYFLITDISDFKRKMPDLP--GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEA 406 (422)
T ss_dssp CEEEBCSBSSEEEEECHHHHHHCCCCC--CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHH
T ss_pred CeecCCCeeeEEEEechhhcccccccc--cccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHH
Confidence 444445668888888743110 0000 000000024566654 45799998864 2457999888999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++++++++|+++++++
T Consensus 407 ~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 407 TLQAMDEKLRKWKVEL 422 (422)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-31 Score=247.50 Aligned_cols=326 Identities=16% Similarity=0.128 Sum_probs=216.3
Q ss_pred ecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHH
Q 015230 32 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLR 110 (411)
Q Consensus 32 ~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~ 110 (411)
+.+|+.++||.++. ++++ .+|++++++.++++....| +.....++.+.+++.++ .++++++|+|+++++..+++
T Consensus 20 ~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~ 94 (364)
T 1lc5_A 20 GISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS 94 (364)
T ss_dssp TSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred CCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHH
Confidence 35678899999885 4566 7899999999988763233 22234556666666666 56899999999999999998
Q ss_pred HHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC-HHHHHHHHHcCCCcEEEEEE
Q 015230 111 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 111 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~~~~vi~ 189 (411)
.+ +++.|++..++||+....+ ...|..+..++.....++ + ++++.+.+. ++++++++
T Consensus 95 ~~----~gd~vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~--------------~~l~~~~~~~~---~~~~~v~i 152 (364)
T 1lc5_A 95 GL----KPRRAMIVTPGFAEYGRAL-AQSGCEIRRWSLREADGW--------------QLTDAILEALT---PDLDCLFL 152 (364)
T ss_dssp HH----CCSEEEEEESCCTHHHHHH-HHTTCEEEEEECCGGGTT--------------CCCTTHHHHCC---TTCCEEEE
T ss_pred Hc----CCCeEEEeCCCcHHHHHHH-HHcCCeEEEEeCCccccc--------------chhHHHHHhcc---CCCCEEEE
Confidence 54 4589999999999755443 333443333222110111 1 122333332 34455554
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cc-ccccCCCcchhhhhhhcc-CCccccccc-c
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYFGVTPDLTTLGKIIG-GGLPVGAYG-G 264 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~-~~~~~~~~d~~~~sK~~~-~G~~~g~~~-~ 264 (411)
..++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..+.. .. .+..+....+.|+||+++ +|+|+||++ +
T Consensus 153 ~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 231 (364)
T 1lc5_A 153 CTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNS 231 (364)
T ss_dssp ESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred eCCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEEC
Confidence 33355667654 5677999999999999999999999977 43321 11 122333445669999998 799999998 9
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|++ .+......+.|+++++
T Consensus 232 ~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~g~~~~~ 302 (364)
T 1lc5_A 232 DDAAMARMRRQ-----QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ----LPLLTVYPGRANYLLL 302 (364)
T ss_dssp CHHHHHHHHHH-----SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT----STTEEECCCSSSEEEE
T ss_pred CHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc----CCCCEECCCCCeEEEE
Confidence 99998887632 13677889999988887753111 33444455555555555543 3333333456788888
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++... ..++.+.|.++||.+.++. .+.+|+++. +.++++++++.|++++++
T Consensus 303 ~~~~~---------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 303 RCERE---------------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp EESCT---------------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC--
T ss_pred ECCCc---------------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhc
Confidence 77421 1367888899999999864 235788865 688899999999987654
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=247.02 Aligned_cols=342 Identities=13% Similarity=0.037 Sum_probs=229.5
Q ss_pred cCCCEEEeccCCcccccc--CCCcHHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHhhC-C-CCCEEEEeCChHH
Q 015230 33 IDGNEYIDYVGSWGPAII--GHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAV-P-SIEMVRFVNSGTE 103 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~--g~~~~~v~~a~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~-~-~~~~v~~~~~g~~ 103 (411)
..|+.++||..+.. ... ...+|.+++++.+.++......| ..++++.+++++...- + ..+++++|+||++
T Consensus 51 ~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~ 129 (427)
T 3dyd_A 51 NPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQ 129 (427)
T ss_dssp CTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHH
T ss_pred cCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHH
Confidence 45788999999842 211 23789999999999987432222 2455555665554320 0 4789999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|++.+++.+ ..+++.|++..++|++... .....|..+..++.....+. .+ |++++++.++. +
T Consensus 130 al~~~~~~l--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~---------~~---d~~~l~~~l~~---~ 191 (427)
T 3dyd_A 130 AIDLCLAVL--ANPGQNILVPRPGFSLYKT-LAESMGIEVKLYNLLPEKSW---------EI---DLKQLEYLIDE---K 191 (427)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEEEGGGTT---------EE---CHHHHHSSCCT---T
T ss_pred HHHHHHHHh--cCCCCEEEEcCCCchhHHH-HHHHcCCEEEEEecccccCC---------CC---CHHHHHHHhcc---C
Confidence 999999864 3467889999999986443 33334443333222110110 00 78888887763 4
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccCCCcchh---hhhhhcc-CCc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGL 257 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~~~~d~~---~~sK~~~-~G~ 257 (411)
+++++++..+|++|... +.+++++|+++|++||+++|+||+|++| +.|.. .....++..++++ |+||.++ +|+
T Consensus 192 ~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~ 270 (427)
T 3dyd_A 192 TACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGW 270 (427)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGG
T ss_pred CCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCc
Confidence 56555555567777655 5666999999999999999999999988 55532 2333344444444 8999987 699
Q ss_pred cccccccc-------HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 258 PVGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 258 ~~g~~~~~-------~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
|+||++++ +++++.+.. ....+++.++++++++.++++.... ++.+++++++.+++.+.|+++
T Consensus 271 riG~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 343 (427)
T 3dyd_A 271 RLGWILIHDRRDIFGNEIRDGLVK----LSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI--- 343 (427)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH----HHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ceEEEEecCcchhhHHHHHHHHHH----HHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99999876 467666642 1122577899999999988874221 455566666666666666653
Q ss_pred cCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC----CcceeeecCCCHHHHHHHH
Q 015230 328 AGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTI 401 (411)
Q Consensus 328 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i 401 (411)
+..... ...|+++++.+..... +...+..++.+.|. ++||++.++. .+.+|+++.++++++++++
T Consensus 344 -~g~~~~~p~~g~~~~~~l~~~~~--------~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l 414 (427)
T 3dyd_A 344 -PGLRPVRPSGAMYLMVGIEMEHF--------PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEAC 414 (427)
T ss_dssp -TTEEEECCSBTTEEEEEECGGGC--------TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHH
T ss_pred -CCceecCCCeeEEEEEecCHhhc--------CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHH
Confidence 433333 4457788888752111 11112356777764 7899999874 3458999889999999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
++|.+++++
T Consensus 415 ~~l~~~l~~ 423 (427)
T 3dyd_A 415 SRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=241.59 Aligned_cols=327 Identities=17% Similarity=0.153 Sum_probs=227.7
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
.++||.++. .+++ .++.+.+++.++++....|.. .....++.+.+++.++ .++++++|+||++|++.+++.+ .
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~-~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~--~ 99 (381)
T 1v2d_A 26 GAVNLGQGF--PSNP-PPPFLLEAVRRALGRQDQYAP-PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--V 99 (381)
T ss_dssp TCEECCCCS--CSSC-CCHHHHHHHHHHTTTSCSCCC-TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--C
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--C
Confidence 378998885 3344 789999999999876222221 1123556666666666 5678999999999999999864 4
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
.+++.|++.+++||+... .....|..+..++..... .... .|++++++.++ +++++|++++++++
T Consensus 100 ~~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~--------~~~~---~d~~~l~~~l~---~~~~~v~~~~~~np 164 (381)
T 1v2d_A 100 GPGDEVVVLEPFFDVYLP-DAFLAGAKARLVRLDLTP--------EGFR---LDLSALEKALT---PRTRALLLNTPMNP 164 (381)
T ss_dssp CTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEET--------TEEE---CCHHHHHTTCC---TTEEEEEEESSCTT
T ss_pred CCCCEEEEcCCCchhHHH-HHHHcCCEEEEEeCCCCC--------ccCC---cCHHHHHHhcC---cCCEEEEECCCCCC
Confidence 567889999999997543 333444433332221000 0001 18898888775 35788887777777
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-c-ccc-ccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-G-AQE-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~-~~~-~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
+|.+.+ .+.+++|.++|++||+++|+||+|+++ . |.. . ... ..+..+++.|+||+++ +|+|+||+++++++++
T Consensus 165 tG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~ 242 (381)
T 1v2d_A 165 TGLVFG-ERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMP 242 (381)
T ss_dssp TCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred CCCccC-HHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHH
Confidence 887654 566999999999999999999999977 4 421 1 111 2355667789999998 7999999999988887
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
.+.. .....+++.++++++++.++++.. .+ ++++++++++.+++.+.|++. ++.......|+++++++.
T Consensus 243 ~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~ 315 (381)
T 1v2d_A 243 RLAG---MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFLMAELP 315 (381)
T ss_dssp HHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEEEEECT
T ss_pred HHHH---HHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEEEEecC
Confidence 7752 223346778889999988888865 22 456666777777777777663 333322334678888773
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
. . + +.+.+.++||.+.++. .+.+|+++..+++++++++++|.+++++
T Consensus 316 ~-------------~---~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 316 G-------------W---D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNS 370 (381)
T ss_dssp T-------------C---C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred h-------------H---h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 2 1 1 5677889999998762 3458888777999999999999988754
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=244.38 Aligned_cols=334 Identities=16% Similarity=0.129 Sum_probs=232.7
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 108 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~a 108 (411)
.++||.++. .+++ .+|.+++++.++++.. ..|. +..++++++++++.+.++ .++ ++++|+||++|+..+
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 478998884 3344 6899999999999873 2332 235778888888887654 466 999999999999999
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
++.+ ..+++.|++.+++|++... .....|..+..++.... .+ .. .|++++++.++ +++++|
T Consensus 103 ~~~~--~~~gd~Vl~~~~~y~~~~~-~~~~~g~~~~~v~~~~~~~~---------~~---~d~~~l~~~l~---~~~~~v 164 (411)
T 2o0r_A 103 VLGL--VEPGSEVLLIEPFYDSYSP-VVAMAGAHRVTVPLVPDGRG---------FA---LDADALRRAVT---PRTRAL 164 (411)
T ss_dssp HHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEETTE---------EE---CCHHHHHHHCC---TTEEEE
T ss_pred HHHh--cCCCCEEEEeCCCcHhHHH-HHHHcCCEEEEeeccccccC---------CC---CCHHHHHHhhc---cCceEE
Confidence 9864 3456889999999997543 33344443333222100 00 00 28999998886 367777
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccc----cCCCcchhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~----~~~~~d~~~~sK~~~-~G~~~g 260 (411)
++++++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. ..... .+....+.|+||.++ +|+|+|
T Consensus 165 ~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (411)
T 2o0r_A 165 IINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIG 243 (411)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEE
T ss_pred EEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEE
Confidence 7777777788765 4666999999999999999999999977 54421 11111 233444679999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 338 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 338 (411)
|+++++++++.+.. .....+++.++++++++.++++...+ ++++++++++.+++.+.|+++ ++.......|
T Consensus 244 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g 316 (411)
T 2o0r_A 244 WACGPAELIAGVRA---AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGT 316 (411)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBS
T ss_pred EEeeCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCee
Confidence 99999998887763 22233566677888888888865322 556677777777777777765 3332223457
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC-----------------CcceeeecCCCHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----------------~~~~~~~~~~t~~~i~~~ 400 (411)
+++|+++.... ..+..++.+.|. ++||.+.++. .+.+|+++..++++++++
T Consensus 317 ~~~~~~~~~~~-----------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~ 385 (411)
T 2o0r_A 317 YFLCADPRPLG-----------YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEA 385 (411)
T ss_dssp SEEEEECGGGT-----------CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHH
T ss_pred EEEEEecCCCC-----------CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHH
Confidence 78898884310 011256777776 6799998752 235899888899999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 386 ~~~l~~~~~~ 395 (411)
T 2o0r_A 386 IRRLSVLAER 395 (411)
T ss_dssp HHHHGGGGC-
T ss_pred HHHHHHHHhc
Confidence 9999886643
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=241.77 Aligned_cols=336 Identities=16% Similarity=0.174 Sum_probs=229.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|+.++||..+. .+++ .++.+.+++.+.++.. ..|. +..++++++++++.+.++ .+++|++|+|+++|+.
T Consensus 29 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 456788998873 2233 5788999999988763 2232 346778899999987665 4689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.. ..+++.|++.+++|++... .....|..+..++.....++. -|++++++.++ +++++
T Consensus 106 ~~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~ 167 (385)
T 1b5p_A 106 NLFQAI--LDPGDEVIVLSPYWVSYPE-MVRFAGGVVVEVETLPEEGFV------------PDPERVRRAIT---PRTKA 167 (385)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEECCGGGTTC------------CCHHHHHTTCC---TTEEE
T ss_pred HHHHHh--cCCCCEEEEcCCCchhHHH-HHHHcCCEEEEeecCcccCCC------------CCHHHHHHhcC---CCCEE
Confidence 999853 4567889999999985433 333445444443322111111 17888888775 24666
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc--CCCcchhhhhhhcc-CCcccccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF--GVTPDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~--~~~~d~~~~sK~~~-~G~~~g~~ 262 (411)
|++...+|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+.......+ +....+.||||.++ +|+|+||+
T Consensus 168 v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~ 246 (385)
T 1b5p_A 168 LVVNSPNNPTGAVYP-KEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYA 246 (385)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEE
T ss_pred EEEeCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEE
Confidence 555444556666554 455999999999999999999999977 43321111111 22223458999998 79999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH---Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
++++++++.+.. .....+++.+.+++.++.++++. ..+ ++.+++++++.+++.+.|+++ ++.......
T Consensus 247 ~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 319 (385)
T 1b5p_A 247 CGPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSG 319 (385)
T ss_dssp ECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCCCSB
T ss_pred EeCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCe
Confidence 999988887763 22233567788888888888853 222 456677777777888887775 322222344
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+++|+.+.... .+..++.+.|.++||.+.++.. +.+|+++..+++++++++++|.+++++
T Consensus 320 ~~~~~~~~~~~~------------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 320 AFYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384 (385)
T ss_dssp TTEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred eEEEEEecCCCC------------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 667777773211 1236788888899999998742 468999889999999999999877653
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=248.95 Aligned_cols=340 Identities=13% Similarity=0.147 Sum_probs=235.8
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC----CCCEEEEeCChHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTE 103 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~ 103 (411)
++.++||.++.. ++.++.++++.+++.++++.. ..|+ +..++++++++++.+.++ .+++|++|+|+++
T Consensus 42 ~~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 457899998864 345778999999999988752 2332 246778888888876643 4679999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--- 180 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--- 180 (411)
|+..+++.. ..+++.|++..++|++....+ ...|..+..++... .+ .|++++++.++..
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 121 ALDLIGKLF--LDDESYCVLDDPAYLGAINAF-RQYLANFVVVPLED-DG--------------MDLNVLERKLSEFDKN 182 (425)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCCEEEEeCCCcHHHHHHH-HHcCCEEEEeccCC-CC--------------CCHHHHHHHHHhhhhc
Confidence 999999853 345688999999999754433 23343333222110 01 1899999988741
Q ss_pred --CCcEEEEE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc---CCCcchhhhhhh
Q 015230 181 --KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKI 252 (411)
Q Consensus 181 --~~~~~~vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~---~~~~d~~~~sK~ 252 (411)
..++++|+ +...+|++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||+
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~ 261 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKV 261 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTT
T ss_pred ccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccc
Confidence 12577764 445556667664 4666999999999999999999999987 54432 222112 223345699999
Q ss_pred ccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc--CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 253 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 253 ~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+++|+|+||+++++++++.+.. .....+++.++++++++.++++.. .+ ++.+++++++.+++.+.|++....+
T Consensus 262 ~~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 338 (425)
T 1vp4_A 262 LAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDI 338 (425)
T ss_dssp TCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cccccceEEEeeCHHHHHHHHH---HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9989999999999998887763 222335667899999998888753 21 4556667777777777777652211
Q ss_pred CCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCC-CHHHHH
Q 015230 329 GHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 398 (411)
Q Consensus 329 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~-t~~~i~ 398 (411)
+.... ....|+++|+++... . +..++.+.|.++||.+.++. .+.+|+++.. ++++++
T Consensus 339 ~g~~~~~~~~g~~~~~~~~~~-~------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~ 405 (425)
T 1vp4_A 339 PGVKWVKSEGGLFIWLTLPEG-F------------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIV 405 (425)
T ss_dssp TTCEECCCSBSSEEEEECCTT-C------------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHH
T ss_pred CceEEecCCccEEEEEEcCCC-C------------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHH
Confidence 11222 234578899988431 0 11467888888899998863 2457887655 799999
Q ss_pred HHHHHHHHHHHh
Q 015230 399 HTITAAEKVLRQ 410 (411)
Q Consensus 399 ~~i~~l~~~~~~ 410 (411)
+++++|++++++
T Consensus 406 ~~l~~l~~~l~~ 417 (425)
T 1vp4_A 406 EGIKRLREVVLE 417 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=244.24 Aligned_cols=343 Identities=10% Similarity=0.019 Sum_probs=238.3
Q ss_pred CcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCCC---CCHHHHHHHHHHHhhCC---CCCEEEEe
Q 015230 27 GSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SIEMVRFV 98 (411)
Q Consensus 27 g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~~---~~~~~~~l~~~l~~~~~---~~~~v~~~ 98 (411)
...+.+.+|+.++||.++. ++++ .+|++++++.++++.. ..|.. ..++++.+++++.+.++ .++++++|
T Consensus 35 ~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t 111 (437)
T 3g0t_A 35 VTNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPT 111 (437)
T ss_dssp HHHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred HHHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEe
Confidence 3444456788999999985 3333 7899999999998853 22322 25778888888877654 57899999
Q ss_pred CChHHHHHHHHHHHHhccCCc--EEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHH
Q 015230 99 NSGTEACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 176 (411)
Q Consensus 99 ~~g~~a~~~al~~~~~~~~~~--~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (411)
+|+++|+..+++.+....+++ .|++..++|++....+ ...|..+..++.. ..++. -|+++++++
T Consensus 112 ~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~-~~~~~------------~d~~~l~~~ 177 (437)
T 3g0t_A 112 VGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQC-RILGQKFESFDLF-EYRGE------------KLREKLESY 177 (437)
T ss_dssp SHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHH-HHHTCCCEEEEGG-GGCTT------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHH-HHcCCEEEEEeec-CCCCc------------cCHHHHHHH
Confidence 999999999998642114566 8999999999754443 3445444433221 11110 078999999
Q ss_pred HHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC---------ccccc-cCCCcc
Q 015230 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---------GAQEY-FGVTPD 245 (411)
Q Consensus 177 ~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~---------~~~~~-~~~~~d 245 (411)
++. .++++|++..++|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+.. ..+.. .+....
T Consensus 178 l~~--~~~~~v~l~~p~nptG~~~~-~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (437)
T 3g0t_A 178 LQT--GQFCSIIYSNPNNPTWQCMT-DEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYIL 254 (437)
T ss_dssp HTT--TCCCEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEE
T ss_pred Hhc--CCceEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEE
Confidence 843 24555544444666776654 444999999999999999999999877 33321 12211 233344
Q ss_pred hhhhhhhcc-CCcccccccccHHHHH-H-----------------hcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---
Q 015230 246 LTTLGKIIG-GGLPVGAYGGRRDIME-M-----------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--- 303 (411)
Q Consensus 246 ~~~~sK~~~-~G~~~g~~~~~~~~~~-~-----------------~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--- 303 (411)
+.|+||.++ +|+|+||+++++++++ . +.. .....+++.++++++++.++++....
T Consensus 255 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 331 (437)
T 3g0t_A 255 ALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS---ALYALSSGATHSAQWGMAAMLKACNDGEY 331 (437)
T ss_dssp EEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT---HHHHHHSSSCHHHHHHHHHHHHHHHTTSC
T ss_pred EEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHH---HHhhhcCCCCHHHHHHHHHHHhCcHhHHH
Confidence 668999999 8999999999999888 6 552 22334678899999999999887642
Q ss_pred --CChHHHHHHHHHHHHHHHHHHHHhcCCceE------Ee-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc
Q 015230 304 --PGTYEYLNKITGELTQGIIDAGKKAGHAIC------GG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374 (411)
Q Consensus 304 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 374 (411)
++.+++++++.+++.+.|+++ ++... .. ..|+++|+.+.. .+..++.+.|.++
T Consensus 332 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~ 393 (437)
T 3g0t_A 332 NFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKG--------------MDSSKLIEKFVRY 393 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETT--------------CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCC--------------CCHHHHHHHHHHc
Confidence 345556666666666666654 32222 13 567888888841 1136789999999
Q ss_pred CeEeccCCC------cceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 375 GVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 375 Gi~v~~~~~------~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
||.+.++.. +.+|+++.. +++++++++++|++++++
T Consensus 394 gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 394 GMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999998753 458886554 899999999999998764
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=235.63 Aligned_cols=319 Identities=15% Similarity=0.127 Sum_probs=230.8
Q ss_pred EeccCCccccccCCCcHHHHHHHHHHHHcC----CCCCC--CCHHHHHHHHHHHhhC--C-CCCEEEEeCChHHHHHHHH
Q 015230 39 IDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA--PCLLENVLAEMVISAV--P-SIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 39 ~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~~--~~~~~~~l~~~l~~~~--~-~~~~v~~~~~g~~a~~~al 109 (411)
+||.++. ++++ .+|++.+++.++++.. ..|.. ..++++.+++++.+.+ + .++++++|+|++++++.++
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 8998885 3455 7899999999998762 22321 1455666666666553 3 5789999999999999999
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~ 189 (411)
+.+ ..+++.|++.+++|++.... ....|..+..++...... .|++++++.++.. ++++|++
T Consensus 110 ~~l--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~~--~~~~v~~ 170 (369)
T 3cq5_A 110 QAF--GGPGRTALGFQPSYSMHPIL-AKGTHTEFIAVSRGADFR--------------IDMDVALEEIRAK--QPDIVFV 170 (369)
T ss_dssp HHH--CSTTCEEEEEESSCTHHHHH-HHHTTCEEEEEECCTTSS--------------CCHHHHHHHHHHH--CCSEEEE
T ss_pred HHh--cCCCCEEEEcCCChHHHHHH-HHHcCCEEEEecCCcCCC--------------CCHHHHHHHhhcc--CCCEEEE
Confidence 854 34568899999999875443 334454444333211111 1899999998742 4567777
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-ccccC-CCcchhhhhhhcc-CCccccccccc
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG-VTPDLTTLGKIIG-GGLPVGAYGGR 265 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~~~~-~~~d~~~~sK~~~-~G~~~g~~~~~ 265 (411)
+++++++|.+.+ .+++.++|+++++++|+||+|+++ ....... .+.++ ..+++.|+||+++ +|+|+||++++
T Consensus 171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 778888898888 889999999999999999999977 4322221 12334 4456779999998 79999999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEE
Q 015230 266 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 344 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~ 344 (411)
+++++.+.... .+++.++++++++.++++..+. ++.+++++++.+++.+.|++. ++.. .+..|.+++++
T Consensus 247 ~~~~~~l~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~ 316 (369)
T 3cq5_A 247 PAFIDAVMLVR-----LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----GYAV-VPSESNFVFFG 316 (369)
T ss_dssp THHHHHHHTTS-----CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----TCEE-ECCSSSEEEEE
T ss_pred HHHHHHHHHcC-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEE-CCCCCeEEEEE
Confidence 99988887422 2456889999998888875332 667778888888888888764 3322 34567888887
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+.. +..++.+.|.++||.+.+++ .+.+|+++. +++++++++++|+++++
T Consensus 317 ~~~---------------~~~~l~~~l~~~gi~v~~~~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DFS---------------DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CCS---------------SHHHHHHHHHHTTEECBCCSCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CCC---------------CHHHHHHHHHHCCEEEEECCCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 630 12578888999999999873 346888876 89999999999998875
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=236.31 Aligned_cols=324 Identities=15% Similarity=0.072 Sum_probs=214.9
Q ss_pred EeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCh
Q 015230 23 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSG 101 (411)
Q Consensus 23 ~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g 101 (411)
..++|.++++.+|+.++||.++. ++++ .+|++++++.+.+.....| +.....++.+++++.++ .++++++|+|+
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~g~ 76 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRHY--PEPDAGTLRQMLAKRNSVDNNAILVTNGP 76 (350)
T ss_dssp --------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHTTCCGGGEEEESHH
T ss_pred cccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhcC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCH
Confidence 46788999999999999999985 4555 7899999999988553333 32223678888888887 67899999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
++|+..+++.+ . ++.|++..++|++... .....|..+..++. ....++ ++
T Consensus 77 ~~al~~~~~~l---~-gd~Vi~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~~--------------~~---------- 127 (350)
T 3fkd_A 77 TAAFYQIAQAF---R-GSRSLIAIPSFAEYED-ACRMYEHEVCFYPSNEDIGEA--------------DF---------- 127 (350)
T ss_dssp HHHHHHHHHHT---T-TCEEEEEESCCHHHHH-HHHHTTCEEEEEETTSCGGGS--------------CC----------
T ss_pred HHHHHHHHHHH---C-CCEEEEeCCCcHHHHH-HHHHcCCeEEEEecCCccccC--------------cc----------
Confidence 99999999853 3 7899999999986443 33333443333222 111111 11
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC-CEEEEecccccc-ccccCc--cccccCCCcchhhhhhhcc-C
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGF-RLAYGG--AQEYFGVTPDLTTLGKIIG-G 255 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~-~~li~De~~~g~-~~g~~~--~~~~~~~~~d~~~~sK~~~-~ 255 (411)
+++++++++.++|++|.+.+ .+++.++++.++ .+||+||+|+++ ..+... ..+..+....+.|+||.++ +
T Consensus 128 -~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 202 (350)
T 3fkd_A 128 -SNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIP 202 (350)
T ss_dssp -TTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCG
T ss_pred -CCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCc
Confidence 24566666666777888877 555666666554 599999999977 544321 2222233344668999999 7
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
|+|+||+++++++++.+.... .+++.++++++++.++++.... +++.+ ..++.+++.+.|+++ +....
T Consensus 203 G~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L~~~----~~~~~ 272 (350)
T 3fkd_A 203 GLRIGYIVANKDFMKRVAAFS-----TPWAVNALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNRL----DGVEV 272 (350)
T ss_dssp GGCCEEEECCHHHHHHHHTTC-----CTTCSCHHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHHS----TTEEE
T ss_pred chheEeEEeCHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhcC----CCcEE
Confidence 999999999999999887532 3567889999999888875542 34333 337777777777654 33333
Q ss_pred EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 334 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
..+.|.++++.+... +..++.+.|.+ +||.+.++. .+.+|+++. +.+++++++++|++
T Consensus 273 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 273 HPSGTTFFLLRLKKG--------------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALET 337 (350)
T ss_dssp CCCSSSEEEEEESSS--------------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCC--------------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 445677888877421 23688899998 899999874 345888866 78889999999998
Q ss_pred HHHh
Q 015230 407 VLRQ 410 (411)
Q Consensus 407 ~~~~ 410 (411)
++++
T Consensus 338 ~~~~ 341 (350)
T 3fkd_A 338 FLEK 341 (350)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8653
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=245.55 Aligned_cols=331 Identities=14% Similarity=0.119 Sum_probs=223.5
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~ 106 (411)
++.++||.++.. ++.++.++++.+++.++++.. ..|. +..++++.+++++ + .+++|++|+|+++|+.
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI----GVRPEEVLITTGSQQALD 105 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh----CCChhhEEEeccHHHHHH
Confidence 456899988754 445678999999999988752 2232 2234445555544 4 5689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+ ..+++.|++..++|++....+ ...|..+..++... .+ .|++++++.+++. ++++
T Consensus 106 ~~~~~~--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~-~~--------------~d~~~l~~~l~~~--~~~~ 165 (397)
T 2zyj_A 106 LVGKVF--LDEGSPVLLEAPSYMGAIQAF-RLQGPRFLTVPAGE-EG--------------PDLDALEEVLKRE--RPRF 165 (397)
T ss_dssp HHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCEEEEEEEET-TE--------------ECHHHHHHHHHHC--CCSC
T ss_pred HHHHHh--CCCCCEEEEeCCCcHHHHHHH-HHcCCEEEecCcCC-CC--------------CCHHHHHHHHhhc--CCeE
Confidence 999853 345678999999999754433 23343333322110 01 1899999999852 4556
Q ss_pred EE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc------CCCcchhhhhhhccCCc
Q 015230 187 II-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF------GVTPDLTTLGKIIGGGL 257 (411)
Q Consensus 187 vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~------~~~~d~~~~sK~~~~G~ 257 (411)
|+ +..+++++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||++++|+
T Consensus 166 v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~ 244 (397)
T 2zyj_A 166 LYLIPSFQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL 244 (397)
T ss_dssp EEECCBSCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred EEECCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence 53 445566677665 4667999999999999999999999987 54432 222222 22234668999999889
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh--c-CChHHHHHHHHHHHHHHHHHHHHhcC-CceE
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PGTYEYLNKITGELTQGIIDAGKKAG-HAIC 333 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 333 (411)
|+||+++++++++.+.. .....+++.++++++++.++++... . ++++++++++.+++.+.|++. .+ ....
T Consensus 245 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~ 318 (397)
T 2zyj_A 245 RVAFAVAHPEALQKLVQ---AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRY 318 (397)
T ss_dssp CCEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEE
T ss_pred eeEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEE
Confidence 99999999998887763 2223345668898888887775321 1 334455555666666666543 23 1222
Q ss_pred -EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCC-CHHHHHHHHHH
Q 015230 334 -GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHTITA 403 (411)
Q Consensus 334 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~-t~~~i~~~i~~ 403 (411)
....|+++|+++... .+..++.+.|.++||.+.++. .+.+|+++.. +++++++++++
T Consensus 319 ~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~ 385 (397)
T 2zyj_A 319 TRPKGGMFVWMELPKG-------------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRR 385 (397)
T ss_dssp CCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHH
T ss_pred ccCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHH
Confidence 234578888887421 123678999999999998863 2457886554 79999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 386 l~~~l~~ 392 (397)
T 2zyj_A 386 LGRALKG 392 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=239.10 Aligned_cols=352 Identities=13% Similarity=0.032 Sum_probs=230.7
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~a~ 105 (411)
+..++||..+. ..++ .+|.+++++.+++... ..|. +..++++.+++++.+.++ .+ ++|++|+|+++|+
T Consensus 22 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 22 DPSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp STTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 35678988883 2222 7899999999998753 1232 235778889988887654 34 7999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
..+++.+ ..+++.|++..++|++... .....|..+..++.... .+... ......+ |++++++.++ .+
T Consensus 99 ~~~~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~g~~~--~~~~~~~---d~~~l~~~~~---~~ 167 (410)
T 3e2y_A 99 FNSIQGL--VDPGDEVIIMVPFYDCYEP-MVRMAGAVPVFIPLRSKPTDGMKW--TSSDWTF---DPRELESKFS---SK 167 (410)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEECCCCSSCC--BGGGEEC---CHHHHHTTCC---TT
T ss_pred HHHHHHh--cCCCCEEEEeCCCchhhHH-HHHHcCCEEEEEeccccccccccc--cccCCcC---CHHHHHhhcC---CC
Confidence 9999854 4466789999999986543 33444544433322110 01000 0000111 7888888775 36
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc----CCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~----~~~~d~~~~sK~~~-~G 256 (411)
+++|++++++|++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||.++ +|
T Consensus 168 ~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G 246 (410)
T 3e2y_A 168 TKAIILNTPHNPLGKVYT-RQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG 246 (410)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG
T ss_pred ceEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC
Confidence 788888877778887664 455999999999999999999999988 55532 112122 22244668999999 79
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-----KEPGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
+|+||+++++++++.+.. .....+++.++++++++.++++.. ..++..++.++..+..++.+.+...+.++.
T Consensus 247 ~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 323 (410)
T 3e2y_A 247 WKLGWSIGPAHLIKHLQT---VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLK 323 (410)
T ss_dssp GCCEEEECCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ceEEEEEECHHHHHHHHH---HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 999999999999888762 234457888999999998888741 113334444444444444444433334554
Q ss_pred eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH-HHHcCeEeccCCC-----------cceeeecCCCHHHHHH
Q 015230 332 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQF-----------EAGFTSLAHSSDDIQH 399 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~v~~~~~-----------~~~~~~~~~t~~~i~~ 399 (411)
......|+++|+++....... .. .........++.+. +.++||.+.++.. +.+|++++.+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~ 401 (410)
T 3e2y_A 324 PIVPDGGYFIIADVSSLGADL-SD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDA 401 (410)
T ss_dssp EEBCSBSSEEEEECGGGCCCC-TT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHH
T ss_pred ecCCCccEEEEEEchhhhccc-cc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHH
Confidence 444566888898885422100 00 00001112355554 4577999988642 3489999999999999
Q ss_pred HHHHHHH
Q 015230 400 TITAAEK 406 (411)
Q Consensus 400 ~i~~l~~ 406 (411)
++++|++
T Consensus 402 ~l~~l~~ 408 (410)
T 3e2y_A 402 AEEIFRA 408 (410)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999975
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=245.66 Aligned_cols=340 Identities=14% Similarity=0.052 Sum_probs=231.9
Q ss_pred cCCCEEEeccCCcccc-ccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 33 IDGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~-~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.+|+.++||..+.... +++ .++++++++.+.++... .|+ +..++++.+++++.+.++ .++++++|+||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4678899999885311 334 67899999999987643 232 235778888888877653 56899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.+ ..+++.|++.+++|++....+ ...|..+..++.....++ . -|++++++.++. ++
T Consensus 114 l~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~~---~~ 175 (406)
T 1xi9_A 114 LQLIFGAL--LDPGDEILVPGPSYPPYTGLV-KFYGGKPVEYRTIEEEDW---------Q---PDIDDIRKKITD---RT 175 (406)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEEEEGGGTS---------E---ECHHHHHHHCCT---TE
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCccHHHHH-HHcCCEEEEeecCCCcCC---------c---CCHHHHHHhhCc---Cc
Confidence 99999864 345688999999998754433 333443333221100111 0 188999988863 57
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCc-ch--hhhhhhcc-CCccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-DL--TTLGKIIG-GGLPV 259 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~-d~--~~~sK~~~-~G~~~ 259 (411)
++|++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..+.......++... ++ .|+||+++ +|+|+
T Consensus 176 ~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 254 (406)
T 1xi9_A 176 KAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL 254 (406)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC
T ss_pred eEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEE
Confidence 7777777777788765 4566999999999999999999999987 533222222222111 33 48999998 79999
Q ss_pred cccc--ccH----HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 260 GAYG--GRR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 260 g~~~--~~~----~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
||++ +++ ++++.+... .... ++.++++++++.++++...+ ++++++++++.+++.+.|+++ +..
T Consensus 255 G~~~~~~~~~~~~~l~~~l~~~---~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~ 326 (406)
T 1xi9_A 255 GYMYFVDPENKLSEVREAIDRL---ARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----PGI 326 (406)
T ss_dssp EEEEEECTTCTTHHHHHHHHHH---HHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----TTE
T ss_pred EEEEEecCchhHHHHHHHHHHH---HHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CCC
Confidence 9998 888 888877631 1222 66788888888888863221 445566666666666666553 222
Q ss_pred eEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHH
Q 015230 332 ICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITA 403 (411)
Q Consensus 332 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~ 403 (411)
... ...|+++|+.+.... ..+..++.+.|. ++||.+.++. .+.+|+++.++++++++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~ 395 (406)
T 1xi9_A 327 STTKPQGAFYIFPKIEVGP-----------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDR 395 (406)
T ss_dssp ECCCCCBSSEECCEECSCS-----------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHH
T ss_pred eeecCCeeEEEEEecCccC-----------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 211 233666776763210 011367888886 8899998873 346899878999999999999
Q ss_pred HHHHHHhC
Q 015230 404 AEKVLRQI 411 (411)
Q Consensus 404 l~~~~~~~ 411 (411)
|.++++++
T Consensus 396 l~~~l~~~ 403 (406)
T 1xi9_A 396 FEKFMKER 403 (406)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998763
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=239.98 Aligned_cols=340 Identities=13% Similarity=0.057 Sum_probs=228.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHH------------HcCCCC---CCCCHHHHHHHHHHHhhCC-----CCCEE
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETM------------KKGTSF---GAPCLLENVLAEMVISAVP-----SIEMV 95 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l------------~~~~~~---~~~~~~~~~l~~~l~~~~~-----~~~~v 95 (411)
+.++||.++. ++++ ++.+.+++.++. .....| .+..++++.+++++.+.++ .++++
T Consensus 36 ~~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 36 NGVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp TSBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred Cceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 3678998764 5555 567887776432 111122 2346788888988887653 36899
Q ss_pred EEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH
Q 015230 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 175 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 175 (411)
++++|++++++.+++.+ ..+++.|++..++|++.........|..+..++.....++. .|++++++
T Consensus 112 ~~~~G~~~ai~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~ 177 (428)
T 1iay_A 112 VMAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFK------------ITSKAVKE 177 (428)
T ss_dssp EEEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTC------------CCHHHHHH
T ss_pred EEccChHHHHHHHHHHh--CCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCc------------CCHHHHHH
Confidence 99999999999999854 34567899999999875443333445444443322111111 18999998
Q ss_pred HHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-ccccc-------CCC
Q 015230 176 LFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-------GVT 243 (411)
Q Consensus 176 ~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~~-------~~~ 243 (411)
.+++ ...++++|+++..+|++|.+. +.+++++|.++|++||++||+||+|+++ ..+..+ ....+ +..
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSC
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCC
Confidence 8874 223577666655566677665 5677999999999999999999999986 443221 11111 122
Q ss_pred cc----hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh---c--CChHHHHHH
Q 015230 244 PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNK 312 (411)
Q Consensus 244 ~d----~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~---~--~~~~~~~~~ 312 (411)
+| +.|+||+++ +|+|+||+++ ++++++.+.. ...+++.++++++++.++++... . +++++++++
T Consensus 257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 331 (428)
T 1iay_A 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGK 331 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH-----HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 55 569999998 7999999987 6788877752 12246678899988887775321 1 455666777
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------Ccc
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 385 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~ 385 (411)
+.+++.+.|+++ ++.......|+++|+++...... +......++.+.|.++ ||++.++. .+.
T Consensus 332 ~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 332 RHKHFTNGLEVV----GIKCLKNNAGLFCWMDLRPLLRE-------STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHHT----TCCBCCCSSSSEEEEECGGGCSS-------SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHHhc----CCcccCCCeeEEEEEechhhcCC-------CchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 777777777665 32222223578889988532100 1123446788999887 99999864 235
Q ss_pred eeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 386 GFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 386 ~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+++. .+++++++++++|++++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 788766 8999999999999998875
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=238.67 Aligned_cols=321 Identities=15% Similarity=0.110 Sum_probs=223.2
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al 109 (411)
.+|+.++||.++. ++++ .+|++++++.++++.. ..+.|+.....++.+++++.++ .++++++|+||++|+..++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 5678899999984 3333 7899999999998873 0122332233566666666665 5789999999999999999
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~ 189 (411)
+.. ..+++.|++..++|++.... ....|..+..++.. ... +++++ .+.. +++++++
T Consensus 100 ~~l--~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~v~~~--~~~--------------~~~~l---~~~~--~~~~v~i 155 (360)
T 3hdo_A 100 RAF--AAEGEEIGYVHPSYSYYGTL-AEVQGARVRTFGLT--GDF--------------RIAGF---PERY--EGKVFFL 155 (360)
T ss_dssp HHH--CCTTCEEEEESSSCTHHHHH-HHHHTCEEEEECBC--TTS--------------SBTTC---CSSB--CSSEEEE
T ss_pred HHH--hCCCCEEEEcCCChHHHHHH-HHHCCCEEEEeeCC--CCC--------------CHHHH---Hhhc--CCCEEEE
Confidence 853 34568899999999875433 33444444333221 111 11111 1111 1236666
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHH
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
+.++|++|.+.+ +++|.++|+++|+++|+||+|++| ..+.....+..+....+.|+||.++ +|+|+||++++++
T Consensus 156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence 666777888888 899999999999999999999987 3332222233344455679999998 7999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
+++.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|+++ ++. ...+.|.++++.+.
T Consensus 232 ~~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 232 VIAALDKI-----RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----GYD-VIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHHH-----SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEEECT
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCE-EcCCCccEEEEECC
Confidence 98888632 23577899999999988874222 455666777777777776654 332 23456788887653
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.. +..++.+.|.++||.+.++.. +.+|+++. +++++++++++|+++.+
T Consensus 302 ~~--------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 DR--------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TC--------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CC--------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 21 236788999999999998753 56899876 89999999999998754
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=237.57 Aligned_cols=323 Identities=13% Similarity=0.094 Sum_probs=225.4
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.+.++||.++. ++++ .+|++++++.+.++....|. .....++.+.+++.++ ..+++++|+|+++|+..+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~--~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l- 102 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLYP--DDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK- 102 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSCC--CTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCC--CCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-
Confidence 36789999885 4555 78999999999988644433 2222566666666666 6789999999999999999853
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..+++.|++..++|++... .....|..+..++.....+ . |++++++.++ +++++|+++.++
T Consensus 103 -~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~-~-------------d~~~l~~~l~---~~~~~v~~~~p~ 163 (365)
T 3get_A 103 -LNSKNAFLQAGVTFAMYEI-YAKQCGAKCYKTQSITHNL-D-------------EFKKLYETHK---DEIKLIFLCLPN 163 (365)
T ss_dssp -CCTTCEEEECSSCCTHHHH-HHHHHTCEEEECSSSSCCH-H-------------HHHHHHHHTT---TTEEEEEEESSC
T ss_pred -hCCCCEEEEeCCChHHHHH-HHHHcCCEEEEEecCCCCC-C-------------CHHHHHHHhC---CCCCEEEEcCCC
Confidence 3466889998888885433 3334455444433210111 1 7888888886 467787777667
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--ccc--Cccc---cccCCCcchhhhhhhcc-CCcccccccc
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY--GGAQ---EYFGVTPDLTTLGKIIG-GGLPVGAYGG 264 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~--~~~~---~~~~~~~d~~~~sK~~~-~G~~~g~~~~ 264 (411)
|++|.+.+ .+.+++|+++| ++|+++|+||+|+++ . .+. .... +..+....+.|+||.++ +|+|+||+++
T Consensus 164 nptG~~~~-~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 241 (365)
T 3get_A 164 NPLGECLD-ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA 241 (365)
T ss_dssp TTTCCCCC-HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE
T ss_pred CCCCCCcC-HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc
Confidence 77787776 33366666666 679999999999876 3 331 1111 12233344568999998 7999999999
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|+++ ++. ...+.|.++++
T Consensus 242 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~-~~~~~~~~~~~ 311 (365)
T 3get_A 242 NANIISAFYKL-----RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH----NIK-IIDSYTNFITY 311 (365)
T ss_dssp CHHHHHHHHHH-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEE
T ss_pred CHHHHHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEE
Confidence 99998887632 22466889999998888763221 455566666666666666654 332 23456788888
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
++... +..++.+.|.++||.+.++. .+.+|+++. +++++++++++|+++++
T Consensus 312 ~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 312 FFDEK--------------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp ECSSS--------------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred ECCCC--------------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 77431 23688999999999999986 456899876 89999999999998763
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=242.20 Aligned_cols=348 Identities=11% Similarity=0.060 Sum_probs=225.8
Q ss_pred EEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-------------CCC---CCCCHHHHHHHHHHHhhCC---
Q 015230 30 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-------------TSF---GAPCLLENVLAEMVISAVP--- 90 (411)
Q Consensus 30 ~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-------------~~~---~~~~~~~~~l~~~l~~~~~--- 90 (411)
.||.+++...++..+...+++. ++.+.+++.+..... ..| .+..++++.+++++.+..+
T Consensus 30 ~y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~ 107 (435)
T 3piu_A 30 PYHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107 (435)
T ss_dssp BCBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 3667776544444444334444 778888777654421 112 2335778888888875542
Q ss_pred --CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 91 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 91 --~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
..+++++|+||++|++.+++.+ ..+++.|++..++|++.........|..+..++.....++. -
T Consensus 108 ~~~~~~v~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~ 173 (435)
T 3piu_A 108 TFDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQ------------I 173 (435)
T ss_dssp CCCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSC------------C
T ss_pred CCCHHHEEEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCc------------C
Confidence 4789999999999999999853 34567899999998865443332344433333222111110 1
Q ss_pred CHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-cccc---
Q 015230 169 DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYF--- 240 (411)
Q Consensus 169 d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~~~--- 240 (411)
|++++++.+++. ..++++|++++++|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+..+. ....
T Consensus 174 d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~ 252 (435)
T 3piu_A 174 TETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT-RNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKD 252 (435)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccc
Confidence 899999998751 236777777766777777655 555999999999999999999999986 4443221 1111
Q ss_pred -CCC-----cc----hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-----
Q 015230 241 -GVT-----PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----- 303 (411)
Q Consensus 241 -~~~-----~d----~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----- 303 (411)
+.+ +| +.|+||+++ +|+|+||+++ ++.+.+.+.. ...++..++++++++.++++....
T Consensus 253 ~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (435)
T 3piu_A 253 RNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQHLLSAMLSDKKLTKNYI 327 (435)
T ss_dssp -------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-----HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred cccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-----HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence 111 33 568999998 8999999988 5667666652 223455678888887777653221
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ 382 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~ 382 (411)
++.+++++++.+++.+.|++. ++.......|+++|+++...... +......++.+.|.++ ||++.++.
T Consensus 328 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~l~~~~~~-------~~~~~~~~~~~~l~~~~gi~v~~g~ 396 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQKS----GISCLNGNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYEVHLNISPGS 396 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----TCEECCCCSSSEEEEECGGGSSS-------SSHHHHHHHHHHHHHTSCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCcccCCCeeEEEEEEccccccc-------CCchhHHHHHHHHHHHCCEEEeCCc
Confidence 334455555556666655543 43332334468999988542110 1122346788888777 99998853
Q ss_pred ------CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 383 ------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ------~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
...+|+++.. |++++++++++|++++++
T Consensus 397 ~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 397 SCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp GGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 2457887665 999999999999999875
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=249.71 Aligned_cols=343 Identities=13% Similarity=0.074 Sum_probs=228.4
Q ss_pred CEEEeccCCccccccCCCcHHH--HHHHHHHHHc--CCCCC---CCCHHHHHHHHHHHhhC-C-CCCE---EEEeCChHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQV--LAALGETMKK--GTSFG---APCLLENVLAEMVISAV-P-SIEM---VRFVNSGTE 103 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v--~~a~~~~l~~--~~~~~---~~~~~~~~l~~~l~~~~-~-~~~~---v~~~~~g~~ 103 (411)
+.++||.++... +++. +|.+ ++++.++++. ...|. +..++++.+++++.+.. + .+++ +++|+|+++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 568999998521 4664 5656 7777666643 12232 23566777777776554 3 5678 999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|++.+++.+ ..+++.|++.+++|++....+....|..+..++....... .|++++++.++..+.+
T Consensus 125 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 125 GLSLVGDLF--VNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGH-------------YTTDSLVEALQSYNKD 189 (430)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSC-------------BCSHHHHHHHHHCCSS
T ss_pred HHHHHHHHH--hCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCC-------------cCHHHHHHHHHhcCCC
Confidence 999999853 3456889999999997544332213443333332211100 1789999999864445
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-----hCCEEEEecccccc-ccccC-cc-c-cccCCCcc------hhh
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYG-GA-Q-EYFGVTPD------LTT 248 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-----~~~~li~De~~~g~-~~g~~-~~-~-~~~~~~~d------~~~ 248 (411)
++++++..++|++|.+ .+.+++++|.++|++ ||+++|+||+|+++ ..+.. .. . ...+..++ +.|
T Consensus 190 ~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 6665555446667765 456679999999999 99999999999988 54431 11 1 22122222 568
Q ss_pred hhhhcc-CCcccccccc---cHHHHHHhcCCCCc-ccccCCCCCHHHHHHHHHHHH-HH---hc-CChHHHHHHHHHHHH
Q 015230 249 LGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPM-YQAGTLSGNPLAMTAGIHTLK-RL---KE-PGTYEYLNKITGELT 318 (411)
Q Consensus 249 ~sK~~~-~G~~~g~~~~---~~~~~~~~~~~~~~-~~~~t~~~~~~~~a~~~~~l~-~~---~~-~~~~~~~~~~~~~~~ 318 (411)
+||.++ +|+|+||+++ ++++++.+...... ....+++.++++++++.++++ .. +. ++.+++++++.+++.
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTK 348 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 7999999998 99888877631100 011467889999999988887 32 21 235556666666666
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCCCcceeeecC-CCHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-HSSDD 396 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~-~t~~~ 396 (411)
+.|++.....++.......|+++|+++.. .+..++.+.|.+ +||.+.++..+.+|+++. .++++
T Consensus 349 ~~L~~~~~~~g~~~~~~~~g~~~~~~~~~--------------~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~ 414 (430)
T 2x5f_A 349 EVVYADQYHSHWQAYDFNSGYFMAIKVHD--------------VDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDD 414 (430)
T ss_dssp HHHTCGGGTTTEEECCCCBSSEEEEEESS--------------SCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGG
T ss_pred HHHHhhCCCCCceeeCCCceEEEEeCCCC--------------CCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHH
Confidence 66652211223222223346678988841 112578888887 899999986667899766 79999
Q ss_pred HHHHHHHHHHHHHh
Q 015230 397 IQHTITAAEKVLRQ 410 (411)
Q Consensus 397 i~~~i~~l~~~~~~ 410 (411)
+++++++|++++++
T Consensus 415 i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 415 IPHVFDSIAKAIDD 428 (430)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=246.52 Aligned_cols=339 Identities=12% Similarity=0.097 Sum_probs=221.0
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHc-----CC-CCC---CCCHHHHHHHHHHHhhCC-CCCEEEEeCChH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GT-SFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGT 102 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-----~~-~~~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 102 (411)
.+|+.++||.++. ..+. .+|.+++++.++++. .. .|+ +..++++++++++..-.+ .++++++|+|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 3578899999883 2222 789999999999984 11 221 124556666666651112 578999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+++..+ .. ...+++.|++.+++|++....+...+..+.... . ....+..++.++.+.+...+.+. .
T Consensus 143 ~al~~~-~~--l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~-~ 208 (449)
T 3qgu_A 143 CDIARI-QM--MFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-----T-----GFDGIEYMVCNPDNHFFPDLSKA-K 208 (449)
T ss_dssp HHHHHH-HH--HHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-----S-----SBTTEEEEECCGGGTTCCCGGGC-C
T ss_pred HHHHHH-HH--HhCCCCEEEEcCCCChhHHHHHHHcCCcccccc-----c-----ccceeEEEecccccCCcCChhHc-C
Confidence 999988 32 235678899999999976655444333211000 0 00112223322111111111111 2
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccccc----CCCcchhhhhhhcc-C
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-G 255 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~----~~~~d~~~~sK~~~-~ 255 (411)
++++|+++..+|++|.+. +.+.+++|+++|++||+++|+||+|++| ..+. ......+ +..+.+.|+||+++ +
T Consensus 209 ~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 455666666666677655 4556999999999999999999999988 5442 1122222 23345679999999 8
Q ss_pred CcccccccccHHHHH--------HhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc-CChHHHHHHHHHHHHHHHHHH
Q 015230 256 GLPVGAYGGRRDIME--------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 256 G~~~g~~~~~~~~~~--------~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~-~~~~~~~~~~~~~~~~~l~~~ 324 (411)
|+|+||+++++++++ .+. ......+.+.++++++++.++++.. .. ++++++++++.+++++.|+++
T Consensus 288 G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYANGEPVHADWN---RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEecCHHHHhhhhhhHHHHHH---HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999998877654 222 1112335578899999988887642 11 566777888888888887765
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------CcceeeecCCCHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 397 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~~~i 397 (411)
++.......|+++|+.+.. .+..++.+.|.++ ||++.|+. ...+|+++..+++++
T Consensus 365 ----g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i 426 (449)
T 3qgu_A 365 ----GFSVYGGDDAPYIWVGFPG--------------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENI 426 (449)
T ss_dssp ----TCCEEESSSSSEEEEECTT--------------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ----CCeeeCCCCeeEEEEECCC--------------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHH
Confidence 4443334458888988741 1125777777776 99998863 245899888899999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=241.92 Aligned_cols=330 Identities=15% Similarity=0.087 Sum_probs=229.0
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.+|+.++||.++. .+++ .++.+++++ ++++... .|. +..++++.+++++.+.++ .++++++|+||++|+
T Consensus 40 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQ--PDLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCC--CCCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 3678999999884 2334 678899999 8887632 232 235778888888887654 468999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC-HHHHHHHHHcCCCcE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~~ 184 (411)
..+++.+ ..+++.|++..++|++.... ....|..+..++.....++ + ++++++.++ +++
T Consensus 116 ~~~~~~~--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~l~---~~~ 175 (409)
T 2gb3_A 116 LFSFAVI--ANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF--------------AIPQNLESFIN---ERT 175 (409)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS--------------CCCTTGGGGCC---TTE
T ss_pred HHHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeccCCCCCC--------------ccHHHHHHhhC---cCC
Confidence 9999864 34568899999999875443 3344544333322110111 1 345555554 357
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccch--hhhhhhcc-CCccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDL--TTLGKIIG-GGLPV 259 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~--~~~sK~~~-~G~~~ 259 (411)
++|+++++++++|.+. +.+.+++|.++|++||++||+||+|+++ ..+..... ..+. ..|+ .|+||+++ +|+|+
T Consensus 176 ~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~ 253 (409)
T 2gb3_A 176 KGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARV 253 (409)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceE
Confidence 7777777777778765 4566999999999999999999999977 54432221 1122 2354 48999998 79999
Q ss_pred ccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEe
Q 015230 260 GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGG 335 (411)
Q Consensus 260 g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 335 (411)
||+++++ ++++.+.. .....+ +.++++++++.++++.... ++++++++++.+++.+.|+++ ++.. ...
T Consensus 254 G~~~~~~~~l~~~l~~---~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 325 (409)
T 2gb3_A 254 GCLITRNEELISHAMK---LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH----GLKRFTKP 325 (409)
T ss_dssp EEEECSCHHHHHHHHH---HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCC
T ss_pred EEEEECcHHHHHHHHH---HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc----CceeeeCC
Confidence 9999887 88887763 112223 7788888888888753211 455666777777777777765 3222 223
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc------CeEeccCC---------CcceeeecCCCHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~v~~~~---------~~~~~~~~~~t~~~i~~~ 400 (411)
..|+++++++.. .+..++.+.|.++ ||.+.++. .+.+|+++.+++++++++
T Consensus 326 ~~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~ 391 (409)
T 2gb3_A 326 SGAFYITAELPV--------------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRA 391 (409)
T ss_dssp SBSSEEEEECSS--------------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHH
T ss_pred CeeEEEEEEeCC--------------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHH
Confidence 447777877731 1126788888887 99998752 345889877999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 392 ~~~l~~~l~~ 401 (409)
T 2gb3_A 392 IDVLMEGLKM 401 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=236.30 Aligned_cols=313 Identities=15% Similarity=0.135 Sum_probs=215.2
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh
Q 015230 59 AALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136 (411)
Q Consensus 59 ~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~ 136 (411)
+++.+++.......++..-..++.+.+++.+. +++++++|+||++|+..+++.+ ..+++.|++..++|++.... .
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHH-H
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHH-H
Confidence 45666666643222222223566666666652 6789999999999999999853 45678899999999875433 3
Q ss_pred hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh
Q 015230 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216 (411)
Q Consensus 137 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~ 216 (411)
...|..+..++.....++. -|+++++++++ +++++|+++++++++|... +.+++++|.++|++|
T Consensus 123 ~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~ 186 (375)
T 3op7_A 123 KSLGAEVDLWQIEEENGWL------------PDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLEELVEIASEV 186 (375)
T ss_dssp HHTTCEEEEEEEEGGGTTE------------ECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTT
T ss_pred HHcCCEEEEEeccccCCCC------------CCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHc
Confidence 3334433332221111110 08999998886 3577788888788888766 466699999999999
Q ss_pred CCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHH
Q 015230 217 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 294 (411)
Q Consensus 217 ~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~ 294 (411)
|+++|+||+|+++ ..+.....+..+..+++.|+||+++ +|+|+||+++++++++.+... ....+++.++++++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~ 263 (375)
T 3op7_A 187 GAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDY---RDYTMICAGVFDDLVA 263 (375)
T ss_dssp TCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTT---GGGTTSCCCHHHHHHH
T ss_pred CCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHH---HhhhccCCCcHHHHHH
Confidence 9999999999987 4433333445566677889999998 799999999999999998743 2444677789999888
Q ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 295 IHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 295 ~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
.++++..+. ++.++.++++.+++.+.|++ .+...... ..|.+.++.+... .+..++.+.+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l 326 (375)
T 3op7_A 264 QLALAHYQEILERNRHILEENLAILDQWIEE----EPLVSYIRPAVVSTSFVKIAVD-------------MPMEDFCLQL 326 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEECCCSSSSCEEEEECCS-------------SCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhh----CCCceEecCCCeEEEeEEcCCC-------------CCHHHHHHHH
Confidence 888774332 33344445555555555544 34333333 3456677776421 1125666666
Q ss_pred -HHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 372 -LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 372 -~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.++||.+.++. .+.+|+++..+.+++++++++|.+++++
T Consensus 327 l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 327 LQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred HHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 68899999875 3568999888889999999999999875
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=233.77 Aligned_cols=328 Identities=19% Similarity=0.144 Sum_probs=228.1
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CC-----CC-CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TS-----FG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~-----~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~ 105 (411)
+|++++||.++ +++|+ .+|++++++.+++++. .. .. ...+...++.+.+++.++..+.+++ ++|++++
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~-~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVF-SSAYNAN 119 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEE-SCHHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEE-CCcHHHH
Confidence 67899999987 66666 5789999999999872 11 11 2346778899999998875566666 5567788
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~ 184 (411)
..++.++....+++.|++..+.|++... .+...|. .+..++++|++++++.+++.. +++
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~-~~~~~g~-------------------~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIE-GIKRNAG-------------------PKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHH-HHHHSCC-------------------CEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHH-HHHHcCC-------------------eEEEEcCCCHHHHHHHHHhhccCCc
Confidence 8887754222345677777666654332 2222222 355566668999999998643 367
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCC----CcchhhhhhhccCCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV----TPDLTTLGKIIGGGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~----~~d~~~~sK~~~~G~ 257 (411)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ |+ ..|..+. ...++ .+.+.|+||+++.
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~-- 252 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV-- 252 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS--
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC--
Confidence 89999999999999988 9999999999999999999998 43 3343222 33333 3335599999984
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+.||+++++++++.+......+.. +.+.++++++++.++++.+.. ++++++++++.+++.+.|+++ .+...
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--- 326 (401)
T 2bwn_A 253 FGGYIAASARMVDAVRSYAPGFIF-STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII--- 326 (401)
T ss_dssp CCEEEEECHHHHHHHHHHCHHHHT-SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC---
T ss_pred CCCEEecCHHHHHHHHHhCcCcee-cCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc---
Confidence 228888888888776532222222 223456888888888887765 467788889999999998876 22221
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC-------cceeeec--CCCHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSL--AHSSDDIQHTITAA 404 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~-------~~~~~~~--~~t~~~i~~~i~~l 404 (411)
...|.++++.+. ...+..++.+.|. ++||.+.++.. ..+|+++ .+|++++++++++|
T Consensus 327 ~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 327 DHGSHIVPVVIG-------------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 393 (401)
T ss_dssp CCSSSCEEEECC-------------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEeC-------------ChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 233567888763 2234567888886 78999987532 3578754 47999999999999
Q ss_pred HHHHHhC
Q 015230 405 EKVLRQI 411 (411)
Q Consensus 405 ~~~~~~~ 411 (411)
+++++++
T Consensus 394 ~~~~~~~ 400 (401)
T 2bwn_A 394 DLLWARC 400 (401)
T ss_dssp HHHC---
T ss_pred HHHHHhc
Confidence 9987653
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=241.11 Aligned_cols=337 Identities=16% Similarity=0.082 Sum_probs=215.4
Q ss_pred CCCEEEeccCCccccccC--CCcHHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHhhCC---CCCEEEE--eCCh
Q 015230 34 DGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF--VNSG 101 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g--~~~~~v~~a~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~--~~~g 101 (411)
.++.++||.++...++.+ +.+|.+++++.+.++......| ..++++.+++++..... .+++|++ |+||
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~ 103 (396)
T 2q7w_A 24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGG 103 (396)
T ss_dssp ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred CCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccc
Confidence 456789999996444544 4679999999888765322222 35566677776644322 3688988 9999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
++|++.+++++..+.+++.|++..++|++....+ ...|..+..++.....+.. .|++++++.+++.+
T Consensus 104 ~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~ 170 (396)
T 2q7w_A 104 TGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF-NSAGLEVREYAYYDAENHT------------LDFDALINSLNEAQ 170 (396)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH-HHTTCEEEEEECEETTTTE------------ECHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH-HHcCCceEEEecccCCCCC------------cCHHHHHHHHHhCC
Confidence 9999999987655567789999999999754433 3334433332221001100 08999999997543
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCccccccC----CCcchhhhhhhcc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFG----VTPDLTTLGKIIG 254 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~~~~~----~~~d~~~~sK~~~ 254 (411)
.+++++++...+|++|.+ .+.+++++|.++|++||+++|+||+|+++ ..+ .......+. ...-+.|+||.++
T Consensus 171 ~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 249 (396)
T 2q7w_A 171 AGDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG 249 (396)
T ss_dssp TTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred CCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc
Confidence 345666666666666765 44566999999999999999999999987 432 221222111 1122558999999
Q ss_pred -CCcccccccc---cH----HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHH
Q 015230 255 -GGLPVGAYGG---RR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELT 318 (411)
Q Consensus 255 -~G~~~g~~~~---~~----~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~ 318 (411)
+|+|+||+++ ++ ++++.+.. .......+.++++++++.++++.. .+ ++++++++++.+++.
T Consensus 250 ~~G~riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (396)
T 2q7w_A 250 LYNERVGACTLVAADSETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp CGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred ccccccceEEEEcCCHHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999975 55 34444431 111223345888888888877532 11 455667777777777
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCC-CHHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDI 397 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~-t~~~i 397 (411)
+.|+++.....+.......|+++|+.+. ...+.+.+.++||++.++ +|+++.. |++++
T Consensus 327 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris~~~~~~e~i 385 (396)
T 2q7w_A 327 NTLQEKGANRDFSFIIKQNGMFSFSGLT-----------------KEQVLRLREEFGVYAVAS----GRVNVAGMTPDNM 385 (396)
T ss_dssp HHHHHTTCCSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCcceecCCCceEEEecCC-----------------HHHHHHHHHhcCeeecCC----ceEEEeecCHHHH
Confidence 7777652100122222344666666441 145667778899999984 5776553 89999
Q ss_pred HHHHHHHHHHH
Q 015230 398 QHTITAAEKVL 408 (411)
Q Consensus 398 ~~~i~~l~~~~ 408 (411)
++++++|++++
T Consensus 386 ~~~~~~l~~~l 396 (396)
T 2q7w_A 386 APLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998763
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=242.41 Aligned_cols=338 Identities=12% Similarity=0.072 Sum_probs=226.2
Q ss_pred CCEEEeccCCccccccCCCc--HHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCC--EEEEeCChH
Q 015230 35 GNEYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP---SIE--MVRFVNSGT 102 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~--~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~ 102 (411)
...++||..+...++.+..+ |.+++++.++++... .| .+..++++.+++++..... .++ ++++|+||+
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t 127 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGT 127 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccH
Confidence 34679999986555666644 899999999988732 22 2335778888888876554 467 899999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC--CCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+|+..++++...+.+++.|++.+++|++... .....|..+..++.. ...++ |++++++.+++.
T Consensus 128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~ 192 (420)
T 4f4e_A 128 GALKIGADFLRTLNPKAKVAISDPSWENHRA-LFDMAGFEVVAYPYYDAKTNGV--------------NFDGMLAALNGY 192 (420)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHH-HHHHTTCCEEEEECEETTTTEE--------------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH-HHHHcCCeEEEeeeeccccCcc--------------CHHHHHHHHHhC
Confidence 9999998755455677899999999987533 333445444443321 11111 899999999866
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc--Ccccc----ccCCCcchhhhhhhc
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQE----YFGVTPDLTTLGKII 253 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~--~~~~~----~~~~~~d~~~~sK~~ 253 (411)
+.+++++++++.+|++|.+. +.+.+++|.++|++||+++|+||+|.+| ..+. ..... ..+....+.|+||.+
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 55678888888777888665 4555999999999999999999999988 4321 11111 112223345899999
Q ss_pred c-CCcccccccc---cHHHHHHhcC-CCCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYGG---RRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~~---~~~~~~~~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ .|+|+||+++ ++++++.+.. ........+.+.+.++++++.++++.. ++ ++++++++++.+++.+.
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVER 351 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 6999999842 5555543221 001111234445667777766655431 11 55667777778888887
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCC-CHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~-t~~~i~~ 399 (411)
|+++....++.......|+++|+.+.. +.+.+.+.++||++.+++ |+++.. +++++++
T Consensus 352 L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~l~~~gI~v~~~~----Ris~~~~~~~~i~~ 410 (420)
T 4f4e_A 352 LKAAGIERDFSFINAQRGMFSYSGLTS-----------------AQVDRLREEFGIYAVSTG----RICVAALNTRNLDV 410 (420)
T ss_dssp HHHTTCSSCCTHHHHSCSSEEECCCCH-----------------HHHHHHHHHHCEECCTTS----EEEGGGCCTTTHHH
T ss_pred HHhcCCCCCceeECCCccEEEEeCCCH-----------------HHHHHHHHhCCEEecCCC----eEEEecCCHHHHHH
Confidence 776532112222234457777765521 456777888999999864 776554 8888999
Q ss_pred HHHHHHHHHH
Q 015230 400 TITAAEKVLR 409 (411)
Q Consensus 400 ~i~~l~~~~~ 409 (411)
++++|+++++
T Consensus 411 ~~~~l~~~l~ 420 (420)
T 4f4e_A 411 VANAIAAVLK 420 (420)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998863
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-30 Score=242.22 Aligned_cols=339 Identities=12% Similarity=0.036 Sum_probs=222.5
Q ss_pred CCCEEEeccCCccccccCC--CcHHHHHHHHHHHHc--C-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEE--eCC
Q 015230 34 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKK--G-TSFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 100 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~--~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~--~~~ 100 (411)
+|+.++||..+...++.++ .+|.+.+++.+.++. . ..|. +..++++.+++++....+ .+++|++ |+|
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 4677899999843333333 558999999888732 1 1221 235566677776654433 4689999 999
Q ss_pred hHHHHHHHHHHHHhccCC-----cEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 101 GTEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
|++|++.+++++..+.++ +.|++..++|++.... ....|.. +..++.....+. . .|+++++
T Consensus 108 g~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~---------~---~d~~~l~ 174 (412)
T 1ajs_A 108 GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGV-FTTAGFKDIRSYRYWDTEKR---------G---LDLQGFL 174 (412)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHH-HHHTTCSCEEEEECEETTTT---------E---ECHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHH-HHHcCCceeEEEeeecCCCC---------c---cCHHHHH
Confidence 999999998765445556 7899999999975433 3334443 433322100111 0 1899999
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc---cCccccccCCCcc----h
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTPD----L 246 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g---~~~~~~~~~~~~d----~ 246 (411)
+.+++.+.+++++++...+|++|.+ .+.+++++|.++|++||++||+||+|.+| ..| .......+...+| +
T Consensus 175 ~~l~~~~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (412)
T 1ajs_A 175 SDLENAPEFSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHHSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCCCcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEE
Confidence 9998643355666555555556654 45666999999999999999999999988 544 2222222211223 5
Q ss_pred hhhhhhccC-Ccccccccc---cHHH----HHHhcCCCCcccccCCC-CCHHHHHHHHHHHHHHh------c--CChHHH
Q 015230 247 TTLGKIIGG-GLPVGAYGG---RRDI----MEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLK------E--PGTYEY 309 (411)
Q Consensus 247 ~~~sK~~~~-G~~~g~~~~---~~~~----~~~~~~~~~~~~~~t~~-~~~~~~a~~~~~l~~~~------~--~~~~~~ 309 (411)
.|+||.++. |+|+||+++ ++++ ++.+.. ....++. .++++++++.++++... . ++++++
T Consensus 254 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1ajs_A 254 QSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK----IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADR 329 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH----HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH----HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 689999996 999999988 7764 333331 1222444 58888888888887442 1 566777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 389 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~ 389 (411)
++++.+++.+.|+++.....+.......|+++|+.+. ...+.+.+.++||++.++ +|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris 388 (412)
T 1ajs_A 330 ILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPS----GRIN 388 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTT----SEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------------HHHHHHHHHhCCEEecCC----cEEE
Confidence 7888888888877652000122122334666665431 145566677889999974 5887
Q ss_pred cC-CCHHHHHHHHHHHHHHHHhC
Q 015230 390 LA-HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 390 ~~-~t~~~i~~~i~~l~~~~~~~ 411 (411)
+. .|++++++++++|+++++++
T Consensus 389 ~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 389 MCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHC
T ss_pred eeeCCHHHHHHHHHHHHHHHHhc
Confidence 66 49999999999999998764
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=237.33 Aligned_cols=340 Identities=11% Similarity=0.097 Sum_probs=218.6
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC------CCCC---CCCHHHHHHHHHHHhhCC-CCCEEEEeCChH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG------TSFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGT 102 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~------~~~~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 102 (411)
.+|+.++||.++ .+.-..+|.+++++.++++.. ..|+ +..++++++++++.+.++ ..++|++|+|++
T Consensus 53 ~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~ 129 (432)
T 3ei9_A 53 YPDAQVISLGIG---DTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK 129 (432)
T ss_dssp CTTCCCEECSSC---CCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCeEEccCC---CCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence 457789999998 555348999999999998852 1222 225667778877765445 678999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+++..+.. ...+++.|++.+++|++....+......+..... .. ....+..++.++.+.+...+++. .
T Consensus 130 ~al~~l~~---l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~l~~~-~ 197 (432)
T 3ei9_A 130 CDISRLQV---MFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD-----VQ---KYGNIEYMRCTPENGFFPDLSTV-G 197 (432)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETT-----TT---EETTCEEEECCGGGTTSCCGGGC-C
T ss_pred HHHHHHHH---HcCCCCEEEEeCCCCHHHHHHHHHcCCccccccc-----cc---ccCceEEeccCcccCCcCChhhC-C
Confidence 99987433 2356788999999999765554443332211100 00 00011222221100000001212 2
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc----CCCcchhhhhhhcc-CC
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~----~~~~d~~~~sK~~~-~G 256 (411)
++++++++.++|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+.......+ +....+.|+||+++ +|
T Consensus 198 ~~~~v~l~~p~NPtG~~~~-~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGAAAT-REQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCEEEEeCCCCCCCCCCC-HHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 4455555555666666554 455999999999999999999999987 44322222111 22234668999999 89
Q ss_pred cccccccccHHH--------HHHhcCCCCcccccCCCCCHHHHHHHHHHHHH--Hhc-CChHHHHHHHHHHHHHHHHHHH
Q 015230 257 LPVGAYGGRRDI--------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR--LKE-PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 257 ~~~g~~~~~~~~--------~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~--~~~-~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+|+||+++++++ ++.+.. .......+.++++++++.++++. ... ++++++++++.+++.+.|+++
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 352 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFNR---IICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL- 352 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHHH---HHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEChHHhhcchHHHHHHHHH---HhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 999999888776 555542 11233456788888888877642 111 566677778888888877765
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------CcceeeecCCCHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQ 398 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~~~i~ 398 (411)
++.......|+++|+++... +..++.+.|.++ ||.+.|+. ...+|+++..++++++
T Consensus 353 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~ 415 (432)
T 3ei9_A 353 ---GYDVYGGKNAPYVWVHFPNQ--------------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENIL 415 (432)
T ss_dssp ---TCCEEECSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred ---CceecCCCcceEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHH
Confidence 44333334678889888421 124566666654 99998863 3458999888999999
Q ss_pred HHHHHHHHHHH
Q 015230 399 HTITAAEKVLR 409 (411)
Q Consensus 399 ~~i~~l~~~~~ 409 (411)
+++++|++--+
T Consensus 416 ~~l~rl~~~~~ 426 (432)
T 3ei9_A 416 EACRRFKQLYK 426 (432)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999987543
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-30 Score=240.88 Aligned_cols=339 Identities=15% Similarity=0.076 Sum_probs=221.1
Q ss_pred CCCEEEeccCCccccccC--CCcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhhCCCCCEEEE--eCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVPSIEMVRF--VNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g--~~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~~~~~~~v~~--~~~g~~a 104 (411)
.+..++||.++...++.+ +.++.+++++.+.++... .|. +..++++++++++......+++|++ |+||++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 356789999985433444 468999999988876522 221 2355666777766432114688999 9999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++.+++++..+.+++.|++..++|++....+ ...|..+..++........ .|++++++.+++.+.++
T Consensus 104 ~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~~~~ 170 (394)
T 2ay1_A 104 LRQALELARMANPDLRVFVSDPTWPNHVSIM-NFMGLPVQTYRYFDAETRG------------VDFEGMKADLAAAKKGD 170 (394)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCHHHHHHH-HHHTCCEEEEECEETTTTE------------ECHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHH-HHcCCceEEEecccccCCc------------cCHHHHHHHHHhCCCCC
Confidence 9999987655556788999999999855443 3344444333221001100 08999999998643346
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCcccccc-CCCcc---hhhhhhhcc-CC
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPD---LTTLGKIIG-GG 256 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~~~~-~~~~d---~~~~sK~~~-~G 256 (411)
++++++..+|++|.+. +.+++++|.++|++||+++|+||+|+++ ..+ .......+ ...++ +.|+||+++ +|
T Consensus 171 ~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 249 (394)
T 2ay1_A 171 MVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR 249 (394)
T ss_dssp EEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG
T ss_pred EEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC
Confidence 6777677777777654 4666999999999999999999999987 432 11111111 11223 458999999 79
Q ss_pred cccccccc---cHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHHHHHHHH
Q 015230 257 LPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 257 ~~~g~~~~---~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+|+||+++ ++++++.+... .........+.++++++++.++++.. .+ ++++++++++.+++.+.|+++
T Consensus 250 ~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (394)
T 2ay1_A 250 ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL 329 (394)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987 66554433210 00111222334788888888887643 11 566777788888888888776
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHHHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITA 403 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~i~~~i~~ 403 (411)
.....+.......|+++|+++.. ..+.+.+.++||++.++ +|+++. ++++++++++++
T Consensus 330 ~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~l~~~gi~v~~~----~Ris~~~~~~~~i~~~~~~ 388 (394)
T 2ay1_A 330 SGSDRFGFVAEHRGMFSRLGATP-----------------EQVKRIKEEFGIYMVGD----SRINIAGLNDNTIPILARA 388 (394)
T ss_dssp HTSSTTTHHHHCCSSEEECCCCH-----------------HHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHHH
T ss_pred CCCCCeeEEcCCceEEEeeCCCH-----------------HHHHHHHHhCCEEecCC----CeEEeecCCHhhHHHHHHH
Confidence 42101221122347777765411 45677788899999985 577544 589999999999
Q ss_pred HHHH
Q 015230 404 AEKV 407 (411)
Q Consensus 404 l~~~ 407 (411)
|+++
T Consensus 389 l~~~ 392 (394)
T 2ay1_A 389 IIEV 392 (394)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=236.56 Aligned_cols=336 Identities=13% Similarity=0.029 Sum_probs=223.3
Q ss_pred CEEEeccCCccccccCCC--cHHHHHHHHH-HHHcCC--CCC---CCCHHHHHHHHHHHhhCC---CCC--EEEEeCChH
Q 015230 36 NEYIDYVGSWGPAIIGHA--DDQVLAALGE-TMKKGT--SFG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGT 102 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~--~~~v~~a~~~-~l~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~ 102 (411)
..++||..+...++.+.. +|.+++++.+ +++... .|. +..++++++++++..... .++ ++++|+||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 457999988544455554 4899999999 887632 222 235677888888876654 577 999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC--CCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+|+..++++.....+++.|++..++|++... .....|..+..++.. ...++ |++++++.++++
T Consensus 106 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~~~ 170 (397)
T 3fsl_A 106 GALKVGADFLKRYFPESGVWVSDPTWENHVA-IFAGAGFEVSTYPWYDEATNGV--------------RFNDLLATLKTL 170 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCHHHHH-HHHHTTCCEEEECCEETTTTEE--------------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCchhHHH-HHHHcCCceEEEeeeeccCCcC--------------cHHHHHHHHHhC
Confidence 9999998755455677889999999986533 333445444443331 11111 899999999865
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCccc----cccCCCcchhhhhhhc
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQ----EYFGVTPDLTTLGKII 253 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~----~~~~~~~d~~~~sK~~ 253 (411)
+.++++++++..+|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+ ..... +..+....+.|+||.+
T Consensus 171 ~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 249 (397)
T 3fsl_A 171 QAGSIVLLHPCCHNPTGADLT-NDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp CTTCEEEECSSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCEEEEeCCCCCCCCcCCC-HHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc
Confidence 456777777777777776654 445999999999999999999999987 331 11111 1122233456899999
Q ss_pred c-CCcccccccc---cHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~~---~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ +|+|+||+++ +++.++.+... .......+.+.+.++++++.++++.. .+ ++++++++++.+++.+.
T Consensus 250 ~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (397)
T 3fsl_A 250 SLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKV 329 (397)
T ss_dssp TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7999999953 45555443210 01111223444667777666555421 11 56677788888888888
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCC-CHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~-t~~~i~~ 399 (411)
|+++....++.......|+++|+.+.. ..+.+.+.++||.+.+++ |+++.. +++++++
T Consensus 330 L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~gi~v~~g~----Ris~~~~~~~~i~~ 388 (397)
T 3fsl_A 330 LSTEMPERNFDYLLNQRGMFSYTGLSA-----------------AQVDRLREEFGVYLIASG----RMCVAGLNTANVQR 388 (397)
T ss_dssp HHHHCTTSCCTHHHHCCSSEEECCCCH-----------------HHHHHHHHTTCEECCTTC----EEEGGGCCTTTHHH
T ss_pred HHhcCCCCCceeecCCceEEEecCCCH-----------------HHHHHHHHhCCEEECCCC----eEEEEecCHhhHHH
Confidence 877632112222223456777765421 456777888999999986 665544 7888999
Q ss_pred HHHHHHHHH
Q 015230 400 TITAAEKVL 408 (411)
Q Consensus 400 ~i~~l~~~~ 408 (411)
++++|++++
T Consensus 389 ~~~~l~~~l 397 (397)
T 3fsl_A 389 VAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 999998763
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-29 Score=235.58 Aligned_cols=337 Identities=10% Similarity=0.010 Sum_probs=226.0
Q ss_pred CCEEEeccCCcccccc-CC-CcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCCCCC---EEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAII-GH-ADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVPSIE---MVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~-g~-~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~~~~---~v~~~~~g~~a~ 105 (411)
|+.++||..+.....- .+ .++.+.+++.+..+.. ..| .+..++++.+++++.... +++ ++++|+||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF-RPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG-CCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc-CccccccEEECCchHHHH
Confidence 5678999888321111 22 6677877776544321 122 235677888888887665 345 999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC-CCCCCCCCceeecCCCCHHHHHHHHHcC--CC
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFENN--KG 182 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~ 182 (411)
..+++.. ..+++.|++.+++|++... .....|..+..++..... ++ |++++++.+++. ++
T Consensus 116 ~~~~~~l--~~~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~~~~~~~ 178 (418)
T 3rq1_A 116 HHLIHNY--TEPGDEVLTADWYWGAYRV-ICSDTGRTLVTYSLFDEHNNF--------------NHEAFQNRVNELAAKQ 178 (418)
T ss_dssp HHHHHHH--SCTTCEEEEESSCCTHHHH-HHHHTTCEEEEECSBCTTSSB--------------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--cCCCCEEEECCCCchhHHH-HHHHcCCEEEEEeeeCCCCCc--------------CHHHHHHHHHHhhccC
Confidence 9999853 3456889999999886443 334445544444332111 21 899999998742 12
Q ss_pred cEEEEEEccc-CCCCCccCCCHHHHHHHHHHHH------HhCCEEEEecccccc-cccc---CccccccCCCcc---h--
Q 015230 183 EIAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAY---GGAQEYFGVTPD---L-- 246 (411)
Q Consensus 183 ~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~------~~~~~li~De~~~g~-~~g~---~~~~~~~~~~~d---~-- 246 (411)
..++++++.. +|++|.+.+ .+.+++|+++|+ +||+++|+||+|.+| ..+. .+.....++.++ +
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~-~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 257 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIE-DKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVC 257 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEE
Confidence 3446666544 677777665 444999999999 899999999999988 5542 222222334444 2
Q ss_pred hhhhhhcc-CCcccccccc---cHHHHHHhcCCCCccc-ccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHH
Q 015230 247 TTLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKI 313 (411)
Q Consensus 247 ~~~sK~~~-~G~~~g~~~~---~~~~~~~~~~~~~~~~-~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~ 313 (411)
.||||.++ +|+|+||+++ ++++++.+........ +...+.+.++++++.++++.. .+ ++++++++++
T Consensus 258 ~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
T 3rq1_A 258 YSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDR 337 (418)
T ss_dssp EESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 38999998 7999999988 8888887763211111 112356778888877776422 11 2455667777
Q ss_pred HHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-C
Q 015230 314 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-H 392 (411)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~ 392 (411)
.+++.+.|+++ ++.......|+++|+++. +..++.+.|.++||.+.|++ +.+|++++ +
T Consensus 338 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~gi~v~~g~-~~iRis~~~~ 396 (418)
T 3rq1_A 338 ADIFKQEAAQV----GLPMLPYRGGFFITIPTD----------------SANAICEELKKEHIYVIALA-NGIRIAACGI 396 (418)
T ss_dssp HHHHHHHHHHH----TCCCCCCCSSSEEEEECT----------------THHHHHHHHHHTTEECEECS-SEEEEEGGGS
T ss_pred HHHHHHHHHhc----CCCCCCCCceEEEEcCCC----------------CHHHHHHHHHhCCEEEecCC-CCeEEEEecC
Confidence 77777777776 332223445667776552 12578888999999999975 56899876 5
Q ss_pred CHHHHHHHHHHHHHHHHhC
Q 015230 393 SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~~ 411 (411)
+++++++++++|+++++++
T Consensus 397 ~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 397 PKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp CHHHHTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=230.29 Aligned_cols=302 Identities=13% Similarity=0.100 Sum_probs=210.8
Q ss_pred CCCCHHHHHHHHHHHhhCC-CC---------CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCC
Q 015230 72 GAPCLLENVLAEMVISAVP-SI---------EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS 141 (411)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~-~~---------~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~ 141 (411)
.+..++++++++++.+.++ .. ++|++|+|+++|+..+++.. ..+++.|++.+++|++.... ....|.
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~ 154 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTLQS-LHPLGC 154 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HGGGTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHH-HHHcCC
Confidence 3456889999999988765 32 69999999999999999853 34568899999999875433 333444
Q ss_pred CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---------CcEEEEEEcc-cCCCCCccCCCHHHHHHHHH
Q 015230 142 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---------GEIAAIILEP-VVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---------~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~ 211 (411)
.+..++... .+ .|++++++.+++.+ .++++++++| .+|++|.+. +.+.+++|.+
T Consensus 155 ~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~ 218 (425)
T 2r2n_A 155 NIINVASDE-SG--------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIYE 218 (425)
T ss_dssp EEEEECEET-TE--------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHHH
T ss_pred EEEEeCcCC-CC--------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHHH
Confidence 333322211 11 18999999997421 3567777765 455567654 5666999999
Q ss_pred HHHHhCCEEEEecccccc-cccc----CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCC
Q 015230 212 ITKENGALLIFDEVMTGF-RLAY----GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 286 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~-~~g~----~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~ 286 (411)
+|++||++||+||+|+++ ..|. ...++..+....+.||||++++|+|+||+++++++++.+.. .....+++.
T Consensus 219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~---~~~~~~~~~ 295 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVIL---HIQVSTLHP 295 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHH---HHHTTTCSS
T ss_pred HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHH---HHHHhcCCC
Confidence 999999999999999987 4442 12222223345567999999989999999999999888763 223346788
Q ss_pred CHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHHHHHhcCCc-e-EEeeecceEEEEEecCCCCCcchhc
Q 015230 287 NPLAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDAGKKAGHA-I-CGGYISGMFGFFFTEGPVYNFEDAK 357 (411)
Q Consensus 287 ~~~~~a~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~ 357 (411)
++++++++.++++.+.+ ++++++++++.+++.+.|++. .+.. . .....|+++|+++....
T Consensus 296 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~p~~g~~~~~~~~~~~-------- 364 (425)
T 2r2n_A 296 STFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW---LTGLAEWHVPAAGMFLWIKVKGIN-------- 364 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSEEECCCSBSSEEEEEETTCS--------
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEeCCCceEEEEEEeCCCC--------
Confidence 99999999888875321 344455556666666666553 2322 1 22356888999884321
Q ss_pred ccchHHHHHHHHHHHHcCeEeccCC---------CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 358 KSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 358 ~~~~~~~~~~~~~l~~~Gi~v~~~~---------~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
+. .+.+.+.|.++||.+.|+. .+.+|+++. .+++++++++++|++++++
T Consensus 365 --~~--~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 365 --DV--KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp --CC--HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred --CH--HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 00 1235788889999998863 245888875 7999999999999998875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=232.02 Aligned_cols=312 Identities=12% Similarity=0.061 Sum_probs=212.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
+.++||.+|. +++|+. |.+ ++... ..|++....++.+.+++.++ .+++|++|+|++++++.+++..
T Consensus 29 ~~~i~l~~~~--~~~~~~-~~v------a~~~~--~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~-- 95 (356)
T 1fg7_A 29 NGDVWLNANE--YPTAVE-FQL------TQQTL--NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF-- 95 (356)
T ss_dssp TCSEECSSCC--CSSCCC-CCC------CCCCT--TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH--
T ss_pred CceEEeeCCC--CCCCCC-HhH------hhhhh--ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH--
Confidence 4689999986 678863 444 22222 22332224566666666666 5789999999999999999853
Q ss_pred ccCC-cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 115 FTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 115 ~~~~-~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..++ ++|++..++|++....+ ...|..+..++.. .++. .|++++++.++ +++++++++++
T Consensus 96 ~~~g~d~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~--~~~~------------~d~~~l~~~i~----~~~~v~l~~p~ 156 (356)
T 1fg7_A 96 CEPGKDAILYCPPTYGMYSVSA-ETIGVECRTVPTL--DNWQ------------LDLQGISDKLD----GVKVVYVCSPN 156 (356)
T ss_dssp CCTTTCEEEECSSSCTHHHHHH-HHHTCEEEECCCC--TTSC------------CCHHHHHTSCT----TEEEEEEESSC
T ss_pred hCCCCCEEEEeCCChHHHHHHH-HHcCCEEEEeeCC--CCCC------------CCHHHHHHHhc----CCCEEEEeCCC
Confidence 2345 78999999999755443 3445544443322 1110 17888877664 46676666667
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc-cccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~-~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
|++|.+.+ .+.+++|.++|+ ||+++|+||+|+++ ........ +.++....+.|+||+++ +|+|+||+++++++++
T Consensus 157 nptG~~~~-~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 234 (356)
T 1fg7_A 157 NPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVIN 234 (356)
T ss_dssp TTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHH
T ss_pred CCCCCCCC-HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHH
Confidence 77787654 566999999999 99999999999977 32222221 22333444669999998 7999999999999988
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeecceEEEEEe
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---EPGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFT 346 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~ 346 (411)
.+... ..+++.++++++++.++++... .++.+++++++.+++.+.|+++ +.. ...+..|+++++++.
T Consensus 235 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 305 (356)
T 1fg7_A 235 LLMKV-----IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI----PCVEQVFDSETNYILARFK 305 (356)
T ss_dssp HHHHH-----SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEEECCCSSSEEEEEET
T ss_pred HHHHh-----cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceEECCCCCeEEEEECC
Confidence 87632 2355788999988888875422 1344555666666666666654 421 223446788888773
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEecc-CCC----cceeeecCCCHHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQF----EAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-~~~----~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
+..++.+.|.++||.+.+ +.. +.+|+++. +++++++++++|+++
T Consensus 306 ----------------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 306 ----------------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp ----------------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred ----------------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 126788899999999998 532 35788876 689999999998753
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=221.95 Aligned_cols=314 Identities=13% Similarity=0.116 Sum_probs=220.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
+.+.++||.+|. ++++ .+|.+++++.+.++.... |+.....++.+.+++.++ .++++++|+|+++++..+++.
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~- 87 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARINR--YPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAE- 87 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTTS--CCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH-
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhcc--CCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHh-
Confidence 456789999886 6666 789999999998877433 355666788888888887 678999999999999999984
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
+ +++.|++.+++|++... .....|..+..++.....++ |++++++. . ++++++++.+
T Consensus 88 --~-~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~----~-~~~~v~i~~p 144 (337)
T 3p1t_A 88 --F-SSMRFVTAWPGFDGYRA-RIAVSGLRHFEIGLTDDLLL--------------DPNDLAQV----S-RDDCVVLANP 144 (337)
T ss_dssp --S-TTSEEEEESSSCSHHHH-HHTTSCCEEEEECBCTTSSB--------------CHHHHTTC----C-TTEEEEEESS
T ss_pred --c-CCCeEEEeCCCcHHHHH-HHHHcCCEEEEecCCCCCCC--------------CHHHHHhh----c-CCCEEEEeCC
Confidence 3 67889999999986433 33333443333332211111 77877654 1 3456666666
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
+|++|.+.+ ++++.++|+++++ +|+||+|.+| ..+... ....+....+.|+||.++ +|+|+||+++++++++
T Consensus 145 ~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 218 (337)
T 3p1t_A 145 SNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIA 218 (337)
T ss_dssp CTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHH
T ss_pred CCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcchheEEEEeCHHHHH
Confidence 777888888 8899999999997 5669999877 433221 112222334568999998 8999999999999998
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+... ..+++.++++++++.++++.... ++.++++.++.+++.+.|+++ ++.. ..+.|.++++...+
T Consensus 219 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~~-- 286 (337)
T 3p1t_A 219 AMKRK-----QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----GYRV-ASSEANFVLVENAA-- 286 (337)
T ss_dssp HHHTT-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCB-CCCSSSEEEEECTT--
T ss_pred HHHhh-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----cCEE-CCCCCeEEEEEcCC--
Confidence 88742 23566788888888777753222 344555666666666666654 3322 23457777776521
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
. ..+.+.|.++||.+.++.. +.+|+++. +++++++++++|+++.+
T Consensus 287 -----------~---~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 -----------G---ERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----------T---HHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred -----------H---HHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 1 4677888999999998752 45788866 78999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=233.88 Aligned_cols=344 Identities=10% Similarity=-0.016 Sum_probs=221.8
Q ss_pred CEEEeccCCccccccC-CCcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhh------CC---CCCEEEEeCC
Q 015230 36 NEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISA------VP---SIEMVRFVNS 100 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g-~~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~------~~---~~~~v~~~~~ 100 (411)
+.++||.++....... ..++.+++++.++++... .|+ +..++++.+++++.+. .+ ..++|++|+|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 5689998884321123 378999999999987642 232 2356778888888731 21 4789999999
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+++|+..+++.+ ..+++.|++.+++|++... .....|..+..++.....++ . .|++++++.++.
T Consensus 113 ~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~~- 176 (416)
T 1bw0_A 113 GSHGILMAITAI--CDAGDYALVPQPGFPHYET-VCKAYGIGMHFYNCRPENDW---------E---ADLDEIRRLKDD- 176 (416)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEEEGGGTT---------E---ECHHHHHHHCCT-
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHH-HHHHcCcEEEEeecCcccCC---------C---CCHHHHHHHhcc-
Confidence 999999999854 3456889999999997543 33334443333221100010 0 188999988863
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-----CccccccCCC---cchhhhhh
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-----GGAQEYFGVT---PDLTTLGK 251 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-----~~~~~~~~~~---~d~~~~sK 251 (411)
+++++++...+|++|.+. +++++++|.++|++||++||+||+|+++ ..|. ......++.. ..+.|+||
T Consensus 177 --~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK 253 (416)
T 1bw0_A 177 --KTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAK 253 (416)
T ss_dssp --TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTT
T ss_pred --CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchh
Confidence 345544444456677664 5677999999999999999999999987 4443 1122111212 22458999
Q ss_pred hcc-CCcccccccccHH--HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHH
Q 015230 252 IIG-GGLPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 252 ~~~-~G~~~g~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+++ +|+|+||++++++ +++.+..........+++.++++++++.++++.... ++.+++++++.+++.+.|+++
T Consensus 254 ~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 332 (416)
T 1bw0_A 254 NLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC- 332 (416)
T ss_dssp TTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred hCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 987 6999999987653 322221000011123667889999998888873211 345556666666666666543
Q ss_pred HhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC----CcceeeecCCCHHHHHH
Q 015230 326 KKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 326 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~ 399 (411)
+..... ...|+++|+.+..... +...+...+.+.| .++||.+.++. .+.+|+++..+++++++
T Consensus 333 ---~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~ 401 (416)
T 1bw0_A 333 ---IGLAPTMPRGAMYLMSRIDLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYRE 401 (416)
T ss_dssp ---TTEEECCCCBTTEEEEEECGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHH
T ss_pred ---CCCcccCCCeeEEEEEeCCHHHc--------CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHH
Confidence 322222 2347788887742110 0001235677777 58899999874 34589988889999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|.+++++
T Consensus 402 ~l~~l~~~l~~ 412 (416)
T 1bw0_A 402 AVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=231.50 Aligned_cols=329 Identities=13% Similarity=0.112 Sum_probs=214.7
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCC-CHHHHHHHHHHHhh--CC--CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP-CLLENVLAEMVISA--VP--SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~-~~~~~~l~~~l~~~--~~--~~~~v~~~~~g~~a 104 (411)
.|+.++||.++. ..++ .+|.+++++.++++... ...|. .....++.+.+++. .+ .+++|++|+|++++
T Consensus 31 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 31 PQHTVINLSIGD--TTQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TTSCCEECSSCC--CCCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCCceEeccCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 467889998884 2222 78899999999887521 12232 22234555556555 33 57899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+..++.+ +.+++.|++.+++|++.... ....|.. +..++.....++.. |++ + . ++
T Consensus 108 l~~~~~~---~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~~~------------~l~---~----~-~~ 163 (400)
T 3asa_A 108 LFRLLSF---FGPNQTVAIQDPSYPAYLDI-ARLTGAKEIIALPCLQENAFFP------------EFP---E----D-TH 163 (400)
T ss_dssp HHHHHHH---HCSSCEEEEEESCCHHHHHH-HHHTTCSEEEEEECCGGGTTCC------------CCC---T----T-CC
T ss_pred HHHHHHH---cCCCCEEEECCCCcHHHHHH-HHHcCCcceEecccchhcCccc------------Chh---h----c-cC
Confidence 9987653 35678899999999875433 3344543 33333221111110 211 1 1 24
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-CccccccC----CCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFG----VTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~~----~~~d~~~~sK~~~-~G 256 (411)
+++|++++.+|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..+. ......++ ....+.|+||+++ +|
T Consensus 164 ~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 242 (400)
T 3asa_A 164 IDILCLCSPNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG 242 (400)
T ss_dssp CSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT
T ss_pred ccEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc
Confidence 56666656667777665 4666999999999999999999999988 4442 11221222 2233669999998 89
Q ss_pred cccccccccHHH-------HHHhcCCCCcccccCC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 257 LPVGAYGGRRDI-------MEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 257 ~~~g~~~~~~~~-------~~~~~~~~~~~~~~t~-~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+|+||+++++++ ++.+.. .....++ +.++++++++.++++....++++++++++.+++.+.|+++
T Consensus 243 lriG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---- 315 (400)
T 3asa_A 243 IRLGWTVIPQELTYADGHFVIQDWE---RFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT---- 315 (400)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred hheeEEeeChhhccchhhhHHHHHH---HHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 999999888776 444421 1112233 5788999888888876423677888888888888888765
Q ss_pred CCceEEeeecceEEEE-EecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHH
Q 015230 329 GHAICGGYISGMFGFF-FTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~ 400 (411)
++.......|+++|++ +... . +..++.+.|.+ +||.+.++. .+.+|+++..++++++++
T Consensus 316 g~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~ 382 (400)
T 3asa_A 316 GFEVFGGEHAPYLWVKPTQAN-I------------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAA 382 (400)
T ss_dssp TCEEEECSSSSEEEEECCCTT-C------------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHH
T ss_pred CCeeeCCCCceEEEEeccCCC-C------------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHH
Confidence 3332222347888988 6321 0 01356666665 599998863 245899888899999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 383 l~~l~~~~~~ 392 (400)
T 3asa_A 383 CERLQMAPAL 392 (400)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=230.93 Aligned_cols=316 Identities=12% Similarity=0.105 Sum_probs=220.7
Q ss_pred cCCCcHHHHHHHHHHHHcCC--------CC-CCCCHHHHHHHHH-HHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 50 IGHADDQVLAALGETMKKGT--------SF-GAPCLLENVLAEM-VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~--------~~-~~~~~~~~~l~~~-l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.+..++++++++.+.++... .. .++.....++.++ +++.++.. ++++|+|+++|+..+++.+ ..+++
T Consensus 18 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~--~~~gd 94 (371)
T 2e7j_A 18 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSL--AKKDA 94 (371)
T ss_dssp TCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHH--CCTTC
T ss_pred CCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHH--hCCCC
Confidence 45578999999998887632 11 1245567888898 98888644 9999999999999999864 45678
Q ss_pred EEEEEeCCcCCCchhhhhhcCCCCcccC--CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC--CcEEEEEEcccCCC
Q 015230 120 RIIKFEGCYHGHADPFLVKAGSGVATLG--LPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEIAAIILEPVVGN 195 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~~vi~~~~~~~ 195 (411)
.|++.+++|++.... ....|..+..++ ......+ |++++++.++++. +++++|++++++++
T Consensus 95 ~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~~~~~~~~~v~~~~~~np 159 (371)
T 2e7j_A 95 WVVMDENCHYSSYVA-AERAGLNIALVPKTDYPDYAI--------------TPENFAQTIEETKKRGEVVLALITYPDGN 159 (371)
T ss_dssp EEEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTCCC--------------CHHHHHHHHHHHTTTSCEEEEEEESSCTT
T ss_pred EEEEccCcchHHHHH-HHHcCCeEEEeecccCCCCCc--------------CHHHHHHHHHhhcccCCeEEEEEECCCCC
Confidence 899999999876555 444455444433 2111111 8999999997531 36788999999889
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHH-hcC
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM-VAP 274 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~-~~~ 274 (411)
+|.+.+ +++|.++|++||+++|+||+|+.+..+ .....++.+..+.|+||++++|.|+|++++++++++. +..
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~--~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~ 233 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRR 233 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCB
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECccccCCCC--CChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccc
Confidence 999888 899999999999999999999844111 1122233333345889999987799999999888776 654
Q ss_pred CCCccccc-----CCCCCHHHHHHHHHHHHHHhcCChHHHH--HHHHHHHHHHHHHHHHhcCCceEEee--ecceEEEEE
Q 015230 275 AGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPGTYEYL--NKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFF 345 (411)
Q Consensus 275 ~~~~~~~~-----t~~~~~~~~a~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~ 345 (411)
....+ .. +.+.++.+++++.++++.+.. ++.+++ +++.+++.+.|+++ ++...... .+.++++++
T Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 307 (371)
T 2e7j_A 234 SEKYK-NKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL----GIKQLGDNPHNHDLMFFHA 307 (371)
T ss_dssp CSSCT-TSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT----TCEEESSSSCCSSEEEEEC
T ss_pred cccCc-ccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc----CcEEecCCCccCceEEEEC
Confidence 32211 12 456677778777778877654 566777 88888888888775 22221111 367888876
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC-------C--Cccee-eecC---CCHHHHHHHHHHHHHHHHhC
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------Q--FEAGF-TSLA---HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-------~--~~~~~-~~~~---~t~~~i~~~i~~l~~~~~~~ 411 (411)
. +..++.+.|.++||.+.+. + ...+| +++. +|++++++++++|+++++++
T Consensus 308 ~----------------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 308 E----------------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp H----------------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C----------------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 2 2367888888889998761 1 34578 7654 79999999999999998764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=230.63 Aligned_cols=340 Identities=14% Similarity=0.054 Sum_probs=221.4
Q ss_pred CCCEEEeccCCccccccCC--CcHHHHHHHHH-HHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCC
Q 015230 34 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGE-TMKKGT--SF---GAPCLLENVLAEMVISAVP---SIEMVRF--VNS 100 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~--~~~~v~~a~~~-~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~--~~~ 100 (411)
+|+.++||.++...++.+. .++.+++++.+ .++... .| .+..++++.+++++....+ .+++|++ |+|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 4677899998843222333 56889999988 776421 22 1245667777777765443 4689999 999
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
|++|++.+++++..+.+++.|++..++|++....+ ...|..+..++..+..+.. .|++++++.++..
T Consensus 107 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 107 GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETKS------------LDLNGFLNAIQKA 173 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTTE------------ECHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH-HHcCceEEEEeeecCCCCc------------cCHHHHHHHHHhC
Confidence 99999999765545567788999999999754433 3334443333220000110 1899999999864
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc---cCccc-c--ccC----CCcchhhh
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQ-E--YFG----VTPDLTTL 249 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g---~~~~~-~--~~~----~~~d~~~~ 249 (411)
+...+++++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+| ..+ ..... . ..+ ....+.|+
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEecc
Confidence 33345555455556666554 4555999999999999999999999887 433 21111 1 111 11225589
Q ss_pred hhhccC-Cccccccc--c-----cHH----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-------c-CChHHH
Q 015230 250 GKIIGG-GLPVGAYG--G-----RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-------E-PGTYEY 309 (411)
Q Consensus 250 sK~~~~-G~~~g~~~--~-----~~~----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-------~-~~~~~~ 309 (411)
||.++. |+|+||++ + +++ +++.+.. .....+.+.++++++++.++++... . ++++++
T Consensus 253 sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1yaa_A 253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSR 329 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999996 99999997 6 666 6666652 1122234558888888888886441 1 566777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 389 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~ 389 (411)
++++.+++.+.|+++.....+.......|+++|+.+. ...+.+.+.++||.+.+ .+|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~----~~Ris 388 (412)
T 1yaa_A 330 ITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-----------------PQMVKRLEETHAVYLVA----SGRAS 388 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCT----TSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC-----------------HHHHHHHHHhCCEEecc----CcEEE
Confidence 7788888888887763100122222334566554331 13565666678999987 47886
Q ss_pred cCC-CHHHHHHHHHHHHHHHHhC
Q 015230 390 LAH-SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 390 ~~~-t~~~i~~~i~~l~~~~~~~ 411 (411)
+.. +++++++++++|+++++.+
T Consensus 389 ~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 389 IAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EccCCHhHHHHHHHHHHHHHHhh
Confidence 654 9999999999999988753
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=233.04 Aligned_cols=312 Identities=16% Similarity=0.104 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCc--------------EEEEE-eCCcCCCchhh
Q 015230 74 PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRE--------------RIIKF-EGCYHGHADPF 135 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~--------------~vi~~-~~~~~~~~~~~ 135 (411)
..++++++++++.+.++ .+++|++|+|+++|+..+++.+ ...++ .||+. +++|++.....
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l--~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLF--GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHS--SEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHH--hCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence 35778888888877654 5789999999999999999853 22222 46654 77887654322
Q ss_pred h---hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 136 L---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 136 ~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
. ...+.+....+.+.... .+...+ .-|++++++++++..+++++|+++..+|++|.+.+ .+.+++|.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~---~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~-~~~l~~i~~~ 234 (444)
T 3if2_A 163 VEGQHFAAVLPHIDEVTHDGE----EGFFKY---RVDFEALENLPALKEGRIGAICCSRPTNPTGNVLT-DEEMAHLAEI 234 (444)
T ss_dssp SSSCCEEECCCEEEEEEETTE----EEEEEE---ECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCC-HHHHHHHHHH
T ss_pred cccchhhccCceEEecccccc----cCcccc---CCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCC-HHHHHHHHHH
Confidence 1 11111111111110000 000000 01899999875432246777777655667777655 4559999999
Q ss_pred HHHhCCEEEEecccccccccc-C--ccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHH
Q 015230 213 TKENGALLIFDEVMTGFRLAY-G--GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 289 (411)
Q Consensus 213 ~~~~~~~li~De~~~g~~~g~-~--~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 289 (411)
|++||++||+||+|+.+..+. . ......+...++.|+||...+|+|+||+++++++++.+.. .....+++.+++
T Consensus 235 a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~~~~~~~~ 311 (444)
T 3if2_A 235 AKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSA---MNAVVNLAPTRF 311 (444)
T ss_dssp HHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHH---HHHHHHSSCCCH
T ss_pred HHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHH---HHHhccCCCChH
Confidence 999999999999997431111 0 0011223445577999985578999999999999888763 223345677888
Q ss_pred HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHH
Q 015230 290 AMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364 (411)
Q Consensus 290 ~~a~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (411)
+++++.+.++.... +.++++++++.+.+.+.|++.....++.......|+++|+++.... .+.
T Consensus 312 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~------------~~~ 379 (444)
T 3if2_A 312 GAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP------------IST 379 (444)
T ss_dssp HHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS------------SCH
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC------------CCH
Confidence 88888777653211 2355666777777777776653322222223456888999884311 123
Q ss_pred HHHHHHHHHcCeEeccCCC--------------cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 365 ARFYRGMLEEGVYFAPSQF--------------EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 365 ~~~~~~l~~~Gi~v~~~~~--------------~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+.+.|.++||.+.++.. +.+|+++..+++++++++++|.+++++
T Consensus 380 ~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 380 LDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp HHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 6788889999999988642 247888777999999999999998865
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=222.18 Aligned_cols=315 Identities=14% Similarity=0.080 Sum_probs=216.9
Q ss_pred CcHHHHHHHHHHHHcCCCC--C--CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-----------c
Q 015230 53 ADDQVLAALGETMKKGTSF--G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T 116 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~--~--~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-----------~ 116 (411)
.+|++.+++.+++...... . ...+..+++.+++++.++ ..+++++|+||++|+..+++.++.. .
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 5789999999988763221 1 125566789999999998 6889999999999999999876543 2
Q ss_pred CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCC
Q 015230 117 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~ 196 (411)
+++.|++..++|++. .......|..+..++......+ |++++++.+++. ++++++++++++++
T Consensus 122 ~gd~vl~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~npt 184 (397)
T 3f9t_A 122 EHPKIIVPITAHFSF-EKGREMMDLEYIYAPIKEDYTI--------------DEKFVKDAVEDY--DVDGIIGIAGTTEL 184 (397)
T ss_dssp SSCEEEEETTCCTHH-HHHHHHHTCEEEEECBCTTSSB--------------CHHHHHHHHHHS--CCCEEEEEBSCTTT
T ss_pred CCeEEEECCcchhHH-HHHHHHcCceeEEEeeCCCCcC--------------CHHHHHHHHhhc--CCeEEEEECCCCCC
Confidence 367888888888764 3344444554444333211111 899999999853 46677777777888
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--ccc---------CccccccCCCcchhhhhhhccCCcccccccc
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY---------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 264 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~---------~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~ 264 (411)
|.+.+ +++|.++|++||+++|+||+|+++ . .+. .+.... +.+..+.+++|.+++|+++|++++
T Consensus 185 G~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~ 259 (397)
T 3f9t_A 185 GTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF 259 (397)
T ss_dssp CCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred CCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence 88887 999999999999999999999865 2 221 223333 555667789999888889999866
Q ss_pred c-HHHHHHhcCCCCccc--------ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 265 R-RDIMEMVAPAGPMYQ--------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 265 ~-~~~~~~~~~~~~~~~--------~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
+ +.+.+.+....+.+. +++...+.+++.++.+.+.....++..++.+++.+++.+.|+++ .+.... .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~ 335 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKPVI--E 335 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCBSS--C
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEc--C
Confidence 5 445554432111111 11223355566666555543222667778888888888888876 222221 2
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-cceeeec--CCCHHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSL--AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~~~~--~~t~~~i~~~i~~l~~~~~ 409 (411)
+.+.++++.+.+ ...+.+.|.++||.+.++.. +.+|+++ .+|++++++++++|+++++
T Consensus 336 ~~~~~~~~~~~~----------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDED----------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECTT----------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeCC----------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 446677776521 26789999999999998864 5678754 4799999999999998875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=219.66 Aligned_cols=328 Identities=14% Similarity=0.128 Sum_probs=222.1
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CC-------CCHHHHHHHHHHHhhCCC--CCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GA-------PCLLENVLAEMVISAVPS--IEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~-------~~~~~~~l~~~l~~~~~~--~~~v~~~~~g~ 102 (411)
+|+.+++|..+. + ++.++++++++.++++..... .+ +.....++.+.+++.++. .+++++|+|++
T Consensus 20 ~g~~~i~l~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAA---S-AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTT---C-CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCc---c-CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 444455544442 1 357899999999999874211 01 244567889999998874 68999999999
Q ss_pred HHHHHHHHHHHh--ccCCcEEEEEeCCcCCCchhh---hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 103 EACMGVLRLARA--FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 103 ~a~~~al~~~~~--~~~~~~vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
+|+..+++.++. ..+++.|++..++||+..... ....|..+..++.... +. .|++++++.+
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-------------~d~~~l~~~l 161 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GT-------------LQLETLPTLF 161 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SC-------------BCGGGHHHHC
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-CC-------------cCHHHHHHHh
Confidence 999999986532 456789999999999876443 2233544444332211 10 1788888888
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcch--hhhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~ 255 (411)
+ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.... ......+ .+|+ .|+||.++.
T Consensus 162 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g~~--~~~~~~~--~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 162 D---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH--PVDVQAL--DCDFYVFSGHKLYGP 230 (406)
T ss_dssp C---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHH--TCSEEEEEGGGTTSC
T ss_pred c---cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcCCC--CCccccc--CCCEEEEEchhccCC
Confidence 6 36889999999999999988 99999999999999999999973211 1112222 3454 479999963
Q ss_pred -CcccccccccHHHHHHhcCCCCccc------------------ccCCCCCHHHHHHHH-HHHHHHhc---CChHHHHHH
Q 015230 256 -GLPVGAYGGRRDIMEMVAPAGPMYQ------------------AGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNK 312 (411)
Q Consensus 256 -G~~~g~~~~~~~~~~~~~~~~~~~~------------------~~t~~~~~~~~a~~~-~~l~~~~~---~~~~~~~~~ 312 (411)
| +|++++++++++.+.+...... ....+.+++++.++. ++++.+.+ +++++++++
T Consensus 231 ~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 TG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp TT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 8999999999988864321100 011233455555554 66776653 456666777
Q ss_pred HHHHHHHHHHHHHHhcCCceEEee--ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------- 382 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------- 382 (411)
+.+++.+.|+++ +....... .|.++.+.+.+. +..++.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~ 370 (406)
T 1kmj_A 309 LMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGKH--------------HAYDVGSFLDNYGIAVRTGHHCAMPLMA 370 (406)
T ss_dssp HHHHHHHHHTTS----TTEEEESCTTCCSEEEEEETTC--------------CHHHHHHHHHHTTEECEEECTTCHHHHH
T ss_pred HHHHHHHHHhcC----CCeEEecCCCcCCEEEEEECCC--------------CHHHHHHHHhhCCcEEEeccccchHHHH
Confidence 777777777653 32222233 577777766310 12567889999999998764
Q ss_pred ----Ccceeeec--CCCHHHHHHHHHHHHHHHHh
Q 015230 383 ----FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ----~~~~~~~~--~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+|+++ .+|++++++++++|+++++.
T Consensus 371 ~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 371 YYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp HTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 24578754 45999999999999998765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=221.74 Aligned_cols=317 Identities=13% Similarity=0.078 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCc
Q 015230 52 HADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 128 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~ 128 (411)
+.++++++++.+.+.. .++ ...+.++++++++++.++ . .+++++|+||++|+..+++.+ ..+++.|++.+++|
T Consensus 30 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l--~~~gd~vl~~~~~~ 105 (386)
T 2dr1_A 30 ACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG--VSKGGKVLVTIIGA 105 (386)
T ss_dssp CCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH--SCTTCEEEEEESSH
T ss_pred CCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh--hcCCCeEEEEcCCc
Confidence 4678888887666543 221 115677899999999887 3 467999999999999999854 34678999999999
Q ss_pred CCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHH
Q 015230 129 HGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207 (411)
Q Consensus 129 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~ 207 (411)
++. +.......|..+..++... .+. .|++++++.+++. +++++|+++++++++|.+.+ ++
T Consensus 106 ~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~ 166 (386)
T 2dr1_A 106 FGKRYKEVVESNGRKAVVLEYEP-GKA-------------VKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP----LP 166 (386)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCT-TCC-------------CCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----HH
T ss_pred hhHHHHHHHHHhCCceEEEecCC-CCC-------------CCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC----HH
Confidence 873 2233334454444433221 110 2899999999643 35778888888888898887 99
Q ss_pred HHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCC---------
Q 015230 208 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG--------- 276 (411)
Q Consensus 208 ~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~--------- 276 (411)
+|.++|++||+++|+||+|+..... .....+ .+|++ ++||+++++.++|++++++++++.+....
T Consensus 167 ~i~~l~~~~~~~li~D~a~~~~~~~--~~~~~~--~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (386)
T 2dr1_A 167 ELAKVAKEHDKLVFVDAVSAMGGAD--IKFDKW--GLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIP 242 (386)
T ss_dssp HHHHHHHHTTCEEEEECTTTBTTBC--CCTTTT--TCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHH
T ss_pred HHHHHHHHcCCeEEEEccccccCcc--cccccc--CCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHH
Confidence 9999999999999999999733111 112222 34544 67799996545899999999888774210
Q ss_pred ----Cc--ccccCCCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEE
Q 015230 277 ----PM--YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFF 345 (411)
Q Consensus 277 ----~~--~~~~t~~~~~~~~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~ 345 (411)
.. ....+++.++++++++.++++.+.+. +++++++++.+++.+.|+++ .+..... ....+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~ 320 (386)
T 2dr1_A 243 LYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDILAEPGHESPTITAVLT 320 (386)
T ss_dssp HHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSCTTCBCSSEEEEEC
T ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCeeCcCccccCCceEEEEc
Confidence 00 11335677888898888888876533 56778888888888888775 2222111 011467888877
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
.. ..+..++.+.|.++||.+.++. .+.+|+++. +|++++++++++|++++++
T Consensus 321 ~~-------------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 321 PP-------------GIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp CT-------------TCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CC-------------CCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 32 1123678999999999999864 346788655 7999999999999998865
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=217.24 Aligned_cols=330 Identities=14% Similarity=0.134 Sum_probs=224.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC------CCCC---CHHHHHHHHHHHhhCCC--CCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS------FGAP---CLLENVLAEMVISAVPS--IEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~------~~~~---~~~~~~l~~~l~~~~~~--~~~v~~~~~g~ 102 (411)
+|+.+++|..+ .+ ++.++.+++++.++++.... +.+. .....++.+.+++.++. ++++++|+||+
T Consensus 25 ~g~~~i~l~~~---~~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNA---AT-SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTT---TC-CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCC---cc-CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 56677888777 33 36789999999999987321 1121 24467888888888863 58999999999
Q ss_pred HHHHHHHHHHHh--ccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 103 EACMGVLRLARA--FTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 103 ~a~~~al~~~~~--~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
+|++.+++.+.. ..+++.|++..++|++.... .....|..+..++.. .... .|++++++++
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~------------~d~~~l~~~l 166 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQES------------FDLEHFKTLL 166 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSS------------BCHHHHHHHC
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCC------------cCHHHHHHhh
Confidence 999999986521 45678899999999986422 223345544443332 1110 1899999888
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcch--hhhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~ 255 (411)
+ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.... ......++ +|+ .++||.+++
T Consensus 167 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~--~di~~~s~sK~~~~ 235 (420)
T 1t3i_A 167 S---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHY--PLDVQLID--CDWLVASGHKMCAP 235 (420)
T ss_dssp C---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHT--CSEEEEEGGGTTSC
T ss_pred C---CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhccCCc--cCchhhcC--CCEEEEehhhhcCC
Confidence 6 36888999999898999988 99999999999999999999973211 11222233 454 467897663
Q ss_pred CcccccccccHHHHHHhcCCCCccc-----------------ccCCCCCHHHHHHHHH-HHHHHhc---CChHHHHHHHH
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQ-----------------AGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKIT 314 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~-----------------~~t~~~~~~~~a~~~~-~l~~~~~---~~~~~~~~~~~ 314 (411)
..+|++++++++++.+........ ..+.+.+++++.++.. +++.+.+ ++++++.+++.
T Consensus 236 -~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 314 (420)
T 1t3i_A 236 -TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELT 314 (420)
T ss_dssp -TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 128999999999888865322110 0122345555555544 5666543 45667777777
Q ss_pred HHHHHHHHHHHHhcCCceEEee------ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------
Q 015230 315 GELTQGIIDAGKKAGHAICGGY------ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------ 382 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------ 382 (411)
+++.+.|+++ +....... .|.++++.+... +..++.+.|.++||.+.++.
T Consensus 315 ~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~~~~~~~~~ 376 (420)
T 1t3i_A 315 HYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAGL--------------HASDVATMVDQDGIAIRSGHHCTQPL 376 (420)
T ss_dssp HHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETTB--------------CHHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECCC--------------CHHHHHHHHHHCCeEEeeccccchHH
Confidence 7777777664 22222222 377777776310 12567889999999999872
Q ss_pred ------CcceeeecC--CCHHHHHHHHHHHHHHHHhC
Q 015230 383 ------FEAGFTSLA--HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 383 ------~~~~~~~~~--~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+.+|+++. ++++++++++++|+++++++
T Consensus 377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 356888655 59999999999999988753
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=225.62 Aligned_cols=332 Identities=14% Similarity=0.102 Sum_probs=213.7
Q ss_pred CEEEeccCCccccccCCC--cHHHHHHHHHHHHcC------CCCCC---CCHHHHHHHHHHHhhCC---CCCEEEEeCCh
Q 015230 36 NEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKG------TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSG 101 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~--~~~v~~a~~~~l~~~------~~~~~---~~~~~~~l~~~l~~~~~---~~~~v~~~~~g 101 (411)
..++||..+ .+.... .+.+.+++.+.+.+. ..|+. ..++++++++++.+.++ .+++|++|+|+
T Consensus 31 ~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGG---NPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS 107 (417)
T ss_dssp -CCEECSCC---CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred CCceEecCc---CCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence 567888887 343321 144566666555432 12322 25677888888877654 57899999999
Q ss_pred HHHHHHHHHHHHhccCCc-----EEEEE-eCCcCCCchhhhhh---cCCCCcccCCCCCCCCCCCCCCceeecCC-----
Q 015230 102 TEACMGVLRLARAFTGRE-----RIIKF-EGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPF----- 167 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~-----~vi~~-~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (411)
++|+..+++.+. ..++ .|++. +++|++........ .+... .+..++.
T Consensus 108 t~al~~~~~~l~--~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 168 (417)
T 3g7q_A 108 QSAFFYLFNLFA--GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARP-----------------NIELLPEGQFKY 168 (417)
T ss_dssp HHHHHHHHHHHS--BC----CCBEEEESSCCCHHHHHC-----CCEEECCC-----------------EEEEEGGGEEEE
T ss_pred HHHHHHHHHHHc--CCCccCCcceEEEeCCCccccchhhccchhhhccccC-----------------cccccCCccccc
Confidence 999999998642 2222 77776 88888644332111 01111 1111111
Q ss_pred -CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-Ccc--ccccCCC
Q 015230 168 -NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGA--QEYFGVT 243 (411)
Q Consensus 168 -~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~--~~~~~~~ 243 (411)
-|+++++ + .+++++++++..+|++|.+.+ .+.+++|.++|++||+++|+||+|..+..+. ... .+..+..
T Consensus 169 ~~d~~~l~--~---~~~~~~v~~~~p~NptG~~~~-~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 3g7q_A 169 HVDFEHLH--I---GEETGMICVSRPTNPTGNVIT-DEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNI 242 (417)
T ss_dssp ECCGGGCC--C---CTTEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTE
T ss_pred ccCHHHhc--c---ccCceEEEECCCCCCCCCccC-HHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCE
Confidence 1666665 2 246777777766777787665 4449999999999999999999997431111 000 1112333
Q ss_pred cchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHH
Q 015230 244 PDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELT 318 (411)
Q Consensus 244 ~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-----~~~~~~~~~~~~~~~ 318 (411)
..+.|+||...+|+|+||+++++++++.+.. .....+++.++++++++.+.++.... +.++++++++.+.+.
T Consensus 243 i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (417)
T 3g7q_A 243 ILCMSLSKLGLPGSRCGIIIANDKTITAIAN---MNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTI 319 (417)
T ss_dssp EEEEESGGGTCTTSCCEEEECCHHHHHHHHH---HHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEechhccCCCcceEEEEeCHHHHHHHHH---hhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4467999954479999999999999888763 22344667788888888877753211 235566677777777
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------------Ccc
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------FEA 385 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------------~~~ 385 (411)
+.|++.....++.......|+++|+++.... .+..++.+.|.++||.+.++. .+.
T Consensus 320 ~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~------------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~ 387 (417)
T 3g7q_A 320 AIIRRYLSEERCLIHKPEGAIFLWLWFKDLP------------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQC 387 (417)
T ss_dssp HHHHHHCCTTTCEEECCCBSSEEEEECTTCS------------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGE
T ss_pred HHHHHhcccCCceeeCCCcceEEEEEcCCCC------------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCe
Confidence 7777653332333333456889999884311 123678888999999998863 235
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 386 GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 386 ~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+++..+++++++++++|.+++++
T Consensus 388 iRis~~~~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 388 MRMNYVPEPDKIEAGVKILAEEIER 412 (417)
T ss_dssp EEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 7888777999999999999998865
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-28 Score=229.95 Aligned_cols=338 Identities=12% Similarity=0.055 Sum_probs=219.3
Q ss_pred EEeccCCccccccCCCcHHHHHHHH--HHHHcCC-CCCC--CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHH--HHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALG--ETMKKGT-SFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM--GVL 109 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~--~~l~~~~-~~~~--~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~--~al 109 (411)
.+||..+.........++++++++. +.++... ...| ...-..++.+.+++.++ .+++|++|+|+++++. .++
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 106 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLT 106 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHH
Confidence 4777777321111224556777764 4443221 1223 22224566666666666 6789999999999997 777
Q ss_pred HHHHhc-cC--------CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 110 RLARAF-TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 110 ~~~~~~-~~--------~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+..... .+ ++.|++.+++|++.... ....|..+..++... .++ |++++++++++.
T Consensus 107 ~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~-~g~--------------d~~~l~~~l~~~ 170 (423)
T 3ez1_A 107 FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLL-LQTLGFELLTVDMQS-DGP--------------DVDAVERLAGTD 170 (423)
T ss_dssp HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHH-HHHHTCEEEEEEEET-TEE--------------CHHHHHHHHHSC
T ss_pred HHHhccCCCccccccCCCCEEEEcCCCcHHHHHH-HHHcCCEEEeccCCC-CCC--------------CHHHHHHHHhhC
Confidence 643221 23 58899999999875443 334444333332211 111 899999999632
Q ss_pred CCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHH-HHhCCEEEEecccccc-ccc--cCc---cc------cccCCCcch
Q 015230 181 KGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGF-RLA--YGG---AQ------EYFGVTPDL 246 (411)
Q Consensus 181 ~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~-~~~~~~li~De~~~g~-~~g--~~~---~~------~~~~~~~d~ 246 (411)
.++++|+++|. +|++|.+.+ .+.+++|+++| ++||+++|+||+|+.+ ..+ ... .. +..+....+
T Consensus 171 -~~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 171 -PSVKGILFVPTYSNPGGETIS-LEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp -TTEEEEEECSSSCTTTCCCCC-HHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred -CCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 46888887764 455666655 44599999999 9999999999999843 221 111 11 122334456
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-Hh---c--CChHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LK---E--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-~~---~--~~~~~~~~~~~~~~~~~ 320 (411)
.||||.+.+|+|+||+++++++++.+.. .....+++.+++++.++.++++. .. . ++.++.++++.+.+.+.
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLSK---YLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEV 325 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHHH---HHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999996689999999999999888763 22344678889999888888775 11 1 23344455555556666
Q ss_pred HHHHHHhcC-Cc-eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------Ccceee
Q 015230 321 IIDAGKKAG-HA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT 388 (411)
Q Consensus 321 l~~~~~~~~-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~ 388 (411)
|.+.....+ .. ......|+++|+++... +...+.+.|.++||.+.+++ .+.+|+
T Consensus 326 l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRi 391 (423)
T 3ez1_A 326 LRAELGEGGEYATWTLPKGGYFISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRL 391 (423)
T ss_dssp HHHHHTTTTSSEEECCCSBSSCEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEE
T ss_pred HHHhcCcCCCceEEeCCCccEEEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEE
Confidence 655433333 12 12234688999988431 13678889999999999832 245788
Q ss_pred ecCC-CHHHHHHHHHHHHHHHHh
Q 015230 389 SLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 ~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
++.. +++++++++++|.+++++
T Consensus 392 s~~~~~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 392 APTRPPVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Confidence 7654 999999999999998865
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=218.77 Aligned_cols=308 Identities=11% Similarity=0.081 Sum_probs=202.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHHHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~~~al~~ 111 (411)
..++||.++. ++++ .+|++++++.+++.......|+.....++.+.+++.++ .++++++|+|+++++..+++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence 3578998884 3344 68999999999873211112222123444444444443 468999999999999999984
Q ss_pred HHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE-Ec
Q 015230 112 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-LE 190 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi-~~ 190 (411)
+ ++.|++. ++|++.... ....|..+..++......+ |++++ +++++|+ ++
T Consensus 96 ---~--gd~Vl~~-p~y~~~~~~-~~~~g~~~~~v~~~~~~~~--------------d~~~l--------~~~~~v~l~~ 146 (335)
T 1uu1_A 96 ---F--DRSVFFP-PTYSCYRIF-AKAVGAKFLEVPLTKDLRI--------------PEVNV--------GEGDVVFIPN 146 (335)
T ss_dssp ---S--SEEEECS-SSCHHHHHH-HHHHTCEEEECCCCTTSCC--------------CCCCC--------CTTEEEEEES
T ss_pred ---h--CCcEEEC-CCcHHHHHH-HHHcCCeEEEeccCCCCCC--------------CHHHc--------CCCCEEEEeC
Confidence 3 5788888 999875443 3344554444332111011 33333 1345555 55
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 268 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~ 268 (411)
| +|++|.+.+ .+++.++++.+| ++|+||+|+++ ........+..+....+.|+||+++ +|+|+||+++++++
T Consensus 147 p-~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 220 (335)
T 1uu1_A 147 P-NNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKF 220 (335)
T ss_dssp S-CTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHH
T ss_pred C-CCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHH
Confidence 6 566777776 555666666558 89999999877 3211111222333455679999998 79999999999999
Q ss_pred HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEec
Q 015230 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347 (411)
Q Consensus 269 ~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 347 (411)
++.+... ..+++.++++++++.++++..+. ++.+++++++.+++.+.|+++ ++.. ....|+++++.+.
T Consensus 221 ~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~- 289 (335)
T 1uu1_A 221 IDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYRI-TDSRGNFVFVFME- 289 (335)
T ss_dssp HHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCCCSSEEEEECC-
T ss_pred HHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CcEE-cCCCCeEEEEECC-
Confidence 8887632 12467889999999888875322 556677778888888888775 2221 2345778887762
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
. .+..++.+.|.++||.+.+. .+.+|+++. +.+++++++++|+++
T Consensus 290 ------------~-~~~~~~~~~l~~~gi~v~~~-~~~iRis~~-~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 290 ------------K-EEKERLLEHLRTKNVAVRSF-REGVRITIG-KREENDMILRELEVF 334 (335)
T ss_dssp ------------T-HHHHHHHHHHHHHTEEEEEE-TTEEEEECC-CHHHHHHHHHHHHCC
T ss_pred ------------C-CCHHHHHHHHHHCCEEEEEC-CCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 1 23467888999999999983 456899875 467899999998754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=217.90 Aligned_cols=319 Identities=14% Similarity=0.091 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 52 HADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
..+|.+++++.+.+.. ..+ ...+...++.+++++.++ .++++++|+||++|+..+++.+ ..+++.|++.+++|+
T Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~--~~~gd~Vl~~~~~~~ 94 (392)
T 2z9v_A 19 NAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL--ISPDDVVLNLASGVY 94 (392)
T ss_dssp CCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH--CCTTCCEEEEESSHH
T ss_pred CCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh--cCCCCEEEEecCCcc
Confidence 4788899888776654 111 123346788889998887 5689999999999999999864 456678999999998
Q ss_pred CCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.... .....|..+..++.... +. .|++++++.+++. +++++|+++++++++|.+.+ +++
T Consensus 95 ~~~~~~~~~~~g~~~~~v~~~~~-~~-------------~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~ 155 (392)
T 2z9v_A 95 GKGFGYWAKRYSPHLLEIEVPYN-EA-------------IDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP----IDA 155 (392)
T ss_dssp HHHHHHHHHHHCSCEEEEECCTT-SC-------------CCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC----HHH
T ss_pred cHHHHHHHHHcCCceEEeeCCCC-CC-------------CCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc----HHH
Confidence 75211 11224554444333211 11 1899999999742 35678888888888898888 999
Q ss_pred HHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCC--C--------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG--P-------- 277 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~--~-------- 277 (411)
|.++|++||+++|+||+|+ + |. ......++.+.-+.|+||+++++..+|++++++++++.+.... +
T Consensus 156 i~~l~~~~~~~li~D~a~~-~--g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 232 (392)
T 2z9v_A 156 IGALVSAHGAYLIVDAVSS-F--GGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIV 232 (392)
T ss_dssp HHHHHHHTTCEEEEECTTT-B--TTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSG
T ss_pred HHHHHHHcCCeEEEEcccc-c--CCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHH
Confidence 9999999999999999996 2 11 1112222322223478898876545699999999887775311 0
Q ss_pred -------cccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce-EE-eeecceEEEEE
Q 015230 278 -------MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI-CG-GYISGMFGFFF 345 (411)
Q Consensus 278 -------~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~g~~~~~~~ 345 (411)
.......+.+..+++++.++++.+.+ ++++++++++.+++++.|+++ ...... .. ...+.++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~ 310 (392)
T 2z9v_A 233 DWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GLSVWAASDSIASPTTTAVRT 310 (392)
T ss_dssp GGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGGGBCTTEEEEEC
T ss_pred HHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCccccCCceEEEEC
Confidence 00112345567777777777776543 456777888888888888775 222211 00 11466777776
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.. ..+..++.+.|.++ ||.+.++. .+.+|+++ .+|++++++++++|+++++++
T Consensus 311 ~~-------------~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 311 PD-------------GVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp CT-------------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CC-------------CCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 31 11236788999988 99998864 34578874 579999999999999988753
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=224.69 Aligned_cols=336 Identities=12% Similarity=0.047 Sum_probs=216.3
Q ss_pred EEeccCCccccc-cCCCcHHHHHHHHHHH--HcC-CCCCCCCHH-HHHHHHHHHhhCC-CCCEEEEeCChHHHH--HHHH
Q 015230 38 YIDYVGSWGPAI-IGHADDQVLAALGETM--KKG-TSFGAPCLL-ENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVL 109 (411)
Q Consensus 38 ~~d~~~~~~~~~-~g~~~~~v~~a~~~~l--~~~-~~~~~~~~~-~~~l~~~l~~~~~-~~~~v~~~~~g~~a~--~~al 109 (411)
++||..+..... ++ .++.+++++.+.+ ... ....|+... ..++.+.+++.++ .+++|++|+|+++++ ..++
T Consensus 34 ~i~l~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~ 112 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLD-LSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLIS 112 (422)
T ss_dssp CEECCCCSCCHHHHH-TTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCC-CcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHH
Confidence 689888842100 22 4556777776552 121 122232211 2344444444445 678999999999997 4555
Q ss_pred HHHHhc--cC--------CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 110 RLARAF--TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 110 ~~~~~~--~~--------~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
+....- .+ ++.|++.+++|++....+ ...|..+..++... .++ |++++++.++.
T Consensus 113 ~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g~--------------d~~~l~~~l~~ 176 (422)
T 3d6k_A 113 WSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT-EHFGFEMINVPMTD-EGP--------------DMGVVRELVKD 176 (422)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TEE--------------CHHHHHHHHTS
T ss_pred HHhcCcccccccccccCCCCEEEEeCCccHHHHHHH-HHcCCEEEecCCCC-CCC--------------CHHHHHHHHhc
Confidence 543221 01 236999999999765433 33444333332211 111 89999999873
Q ss_pred CCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHH-HhCCEEEEeccccc--c-cccc-Cccc-------cccCCCcch
Q 015230 180 NKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTG--F-RLAY-GGAQ-------EYFGVTPDL 246 (411)
Q Consensus 180 ~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~-~~~~~li~De~~~g--~-~~g~-~~~~-------~~~~~~~d~ 246 (411)
.++++|++.| .+|++|.+. +.+++++|.++|+ +||++||+||+|+. | ..+. .... +..+....+
T Consensus 177 --~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (422)
T 3d6k_A 177 --PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFM 253 (422)
T ss_dssp --TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEE
T ss_pred --CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEE
Confidence 2577877555 455566654 5666999999999 99999999999974 5 3332 1111 123445567
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH---hc--CChHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL---KE--PGTYEYLNKITGELTQGI 321 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~---~~--~~~~~~~~~~~~~~~~~l 321 (411)
.||||...+|+|+||+++++++++.+.. .....+++.++++++++.++++.. .+ +++++.++++.+++.+.|
T Consensus 254 ~S~SK~~~~GlriG~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (422)
T 3d6k_A 254 SSTSKITHAGSGVSFFASSKENIEWYAS---HANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEIL 330 (422)
T ss_dssp EESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhcCcccceEEEEeCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999995579999999999999888763 223345678899999888877531 11 344556666777777777
Q ss_pred HHHHHhcCCce-EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------Ccceeeec
Q 015230 322 IDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL 390 (411)
Q Consensus 322 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~~~ 390 (411)
++.....+... .....|+++|+++... +...+.+.|.++||.+.+++ .+.+|+++
T Consensus 331 ~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 331 DSRLSEYGVAKWTSPTGGYFISVDVVPG--------------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHGGGTCEEECCCSBSSCEEEEESTT--------------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHhcCcCCceEEeCCCcceEEEEECCCC--------------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 76544434322 2234688899988431 12567888999999999942 23578887
Q ss_pred C-CCHHHHHHHHHHHHHHHHh
Q 015230 391 A-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~-~t~~~i~~~i~~l~~~~~~ 410 (411)
. .+++++++++++|++++++
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 7 6999999999999998765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=216.44 Aligned_cols=322 Identities=13% Similarity=0.063 Sum_probs=222.5
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--------CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
+|..|+|+.+. ++.++++.+++.++++...... ...+...++.+++++.++ .++++++|+|++++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46778886543 3578899999999998632111 113556789999999997 56899999999999
Q ss_pred HHHHHHHHHhc----cCCcEEEEEeCCcCCCchhhhh-h---c--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 105 CMGVLRLARAF----TGRERIIKFEGCYHGHADPFLV-K---A--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 105 ~~~al~~~~~~----~~~~~vi~~~~~~~~~~~~~~~-~---~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
++.+++.+... .+++++|+.++.+|+.....+. . . |. .+..++. +++++
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~~v~~--~~~l~ 159 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-------------------TLRLVDS--PEELP 159 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-------------------EEEEESS--GGGHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc-------------------eEEEeCc--HHHHH
Confidence 99998865433 4555677777777764333221 1 1 22 2333333 56777
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchh--hhhh
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGK 251 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~--~~sK 251 (411)
+.++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ + |. ......++ +|++ +++|
T Consensus 160 ~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~--g~~~~~~~~~~--~d~~~~s~~K 227 (416)
T 1qz9_A 160 QAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-A--GAVPVDLHQAG--ADYAIGCTYK 227 (416)
T ss_dssp HHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-T--TTSCCCHHHHT--CSEEEECSSS
T ss_pred HHhC---CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-c--cCcCCChhhcC--CCEEEecCcc
Confidence 7775 36889999999999999988 9999999999999999999997 2 21 11122223 4554 5679
Q ss_pred hccCCccc-ccccccHHHHHHhcCCCCcc--------------------cccCCCCCHHHHHHHHHHHHHHhc---CChH
Q 015230 252 IIGGGLPV-GAYGGRRDIMEMVAPAGPMY--------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTY 307 (411)
Q Consensus 252 ~~~~G~~~-g~~~~~~~~~~~~~~~~~~~--------------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~ 307 (411)
++++|.++ |++++++++++.+.+....+ .....+.++.+++++.++++.+.. ++++
T Consensus 228 ~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 307 (416)
T 1qz9_A 228 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307 (416)
T ss_dssp TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99878787 99999988877665421111 111235677888888888887754 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEe----eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 383 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 383 (411)
++++++.+++.+.|+++....++..... ..+.++++.+. + ...+.+.|.++||.+.....
T Consensus 308 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~---~~~l~~~l~~~gi~~~~~~~ 371 (416)
T 1qz9_A 308 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-------------E---GYAVIQALIDRGVIGDYREP 371 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-------------T---HHHHHHHHHTTTEECEEETT
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC-------------C---HHHHHHHHHhCCcEeccCCC
Confidence 7888888888888877522001211111 13567777662 1 26788999999999876555
Q ss_pred cceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 384 EAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 ~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+|+++ .+|++++++++++|++++++
T Consensus 372 ~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 372 RIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 6788865 46999999999999998865
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=219.96 Aligned_cols=317 Identities=14% Similarity=0.123 Sum_probs=217.9
Q ss_pred cCCCcHHHHHHHHHHHHcCC---CC---CCCC--HHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 50 IGHADDQVLAALGETMKKGT---SF---GAPC--LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~---~~---~~~~--~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.|+.++++++++.+.++... .+ .|+. ....++.+.+++.++ ..+++++|+||++|+..+++.++ ..+++.
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~gd~ 103 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQGDE 103 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTTCE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCCCE
Confidence 56678899999999887632 11 1222 556788999999887 56799999999999999998532 356789
Q ss_pred EEEEeCCcCCCchhh---hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 121 IIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 121 vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
|++..++|++..... ....|..+..++....... ..|++++++.++ +++++|+++++++++|
T Consensus 104 vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~---~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 104 ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ------------GDAAAVLANHLG---PKTRLVILSHLLWNTG 168 (390)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS------------SCHHHHHHTTCC---TTEEEEEEESBCTTTC
T ss_pred EEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc------------cchHHHHHHhcC---CCceEEEEeccccCCc
Confidence 999999999765432 2233544444332210111 017888887775 3688899999888899
Q ss_pred ccCCCHHHHHHHHHHHH----HhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHH
Q 015230 198 FIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~----~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~ 271 (411)
.+.+ +++|.++|+ +||+++|+||+|+ + |.. ..+.....+|++ |++|++.+|.++|++++++++++.
T Consensus 169 ~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~--g~~-~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~ 240 (390)
T 1elu_A 169 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-A--GSL-PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGE 240 (390)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-B--TTB-CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGG
T ss_pred eecC----HHHHHHHHhhhhhhcCcEEEEEcccc-c--CCc-CCChhhcCCCEEEccccccccCCCceEEEEECHHhHhh
Confidence 9988 999999999 9999999999997 2 211 111112345654 599977777789999999888877
Q ss_pred hcCCCCc-------------------ccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 272 VAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 272 ~~~~~~~-------------------~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+...... ......+.++++++++.++++.+.+ ++++++++++.+++.+.|+++
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 316 (390)
T 1elu_A 241 INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL---- 316 (390)
T ss_dssp CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc----
Confidence 7642110 0112345677777777777776654 335566777777777777654
Q ss_pred CCceEE---eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceeee--cCCCHHHHHHHHH
Q 015230 329 GHAICG---GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS--LAHSSDDIQHTIT 402 (411)
Q Consensus 329 ~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~--~~~t~~~i~~~i~ 402 (411)
+..... .+.|.++.+++... .+..++.+.|.++||.+.++. .+.+|++ ...++++++++++
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~ 383 (390)
T 1elu_A 317 PHVHCLATSAPQAGLVSFTVDSP-------------LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLA 383 (390)
T ss_dssp TTEEESCSSCCSSSEEEEEECSS-------------SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEecCccccccEEEEEcCCC-------------CCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHH
Confidence 221111 24577777777311 113678889999999999875 4568886 4689999999999
Q ss_pred HHHHH
Q 015230 403 AAEKV 407 (411)
Q Consensus 403 ~l~~~ 407 (411)
+|+++
T Consensus 384 ~l~~~ 388 (390)
T 1elu_A 384 RLADF 388 (390)
T ss_dssp HHTTC
T ss_pred HHHhh
Confidence 98753
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-27 Score=220.63 Aligned_cols=318 Identities=11% Similarity=0.049 Sum_probs=214.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC-CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~ 130 (411)
.+|++++++.+.+... .+....+...++.+++++.++ .. +++++|+||++|++.+++.+ ..+++.|++..++|++
T Consensus 34 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~~~ 110 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIGH-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGIWG 110 (393)
T ss_dssp CCHHHHHHTTCCCCCT-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSHHH
T ss_pred CCHHHHHHhcccccCc-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCchh
Confidence 6788887776533211 111123556788889988887 33 36999999999999999864 5577889998888864
Q ss_pred Cc-hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHH
Q 015230 131 HA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209 (411)
Q Consensus 131 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i 209 (411)
.. .......|..+..++...... .|++++++.++.. ++++|+++++++++|.+.+ +++|
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~~~~--------------~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i 170 (393)
T 3kgw_A 111 MRAAEIADRIGARVHQMIKKPGEH--------------YTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDGF 170 (393)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTCC--------------CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTH
T ss_pred HHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHHH
Confidence 32 222334454444433321111 1899999999852 5678888888888898888 8999
Q ss_pred HHHHHHhCCEEEEecccc-ccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcc---------
Q 015230 210 RRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY--------- 279 (411)
Q Consensus 210 ~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~--------- 279 (411)
.++|++||++||+||+|+ |. ..+..+.++.+..+.+++|+++++.++|++++++++++.+.......
T Consensus 171 ~~l~~~~~~~li~De~~~~g~---~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
T 3kgw_A 171 GELCHRYQCLLLVDSVASLGG---VPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITY 247 (393)
T ss_dssp HHHHHHTTCEEEEECTTTTTT---SCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHH
T ss_pred HHHHHHcCCEEEEECCccccC---cccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHH
Confidence 999999999999999997 21 11222233333334466799987666999999999988876422111
Q ss_pred -----------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce-E-EeeecceEEE
Q 015230 280 -----------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI-C-GGYISGMFGF 343 (411)
Q Consensus 280 -----------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~g~~~~~ 343 (411)
...+.+.++.+++++.++++.+.+ ++++++++++.+++.+.|+++. ..... . ....+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~ 325 (393)
T 3kgw_A 248 LAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG--LKFFVKDPEIRLPTITTV 325 (393)
T ss_dssp HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBSSSSGGGBCSSEEEE
T ss_pred HHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CeeccCChhhcCCeEEEE
Confidence 112345677888888788876554 5667788888888888887762 11110 0 1122456667
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+.. ..+..++.+.|.++ ||.+.++. .+.+|+++ .+|++++++++++|+++++++
T Consensus 326 ~~~~-------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 326 TVPA-------------GYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp ECCT-------------TBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred eCCC-------------CCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 6632 11236788899888 99999864 34578764 359999999999999998763
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=216.62 Aligned_cols=315 Identities=15% Similarity=0.123 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHhhCC-CCC-EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 51 GHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 51 g~~~~~v~~a~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
++.+|++++++.+.+.. .++. ..+..+++++++++.++ .++ ++++|+||++|+..+++.+ ..+++.|++.+++
T Consensus 43 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~--~~~gd~Vl~~~~~ 118 (393)
T 1vjo_A 43 SNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA--VEPGDVVLIGVAG 118 (393)
T ss_dssp CCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESS
T ss_pred CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc--cCCCCEEEEEcCC
Confidence 34788898888776553 2211 23567899999999887 567 8999999999999999864 4567889999999
Q ss_pred cCCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 128 YHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 128 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
|++. +.......|..+..++.+. .+ ..|++++++.+++. ++++|+++++++++|.+.+ +
T Consensus 119 ~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----l 178 (393)
T 1vjo_A 119 YFGNRLVDMAGRYGADVRTISKPW-GE-------------VFSLEELRTALETH--RPAILALVHAETSTGARQP----L 178 (393)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred hhHHHHHHHHHHcCCceEEEecCC-CC-------------CCCHHHHHHHHhhC--CceEEEEeccCCCcceecc----H
Confidence 9872 1222233444444433321 11 12899999999842 4567888888888898887 8
Q ss_pred HHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCC----CCccc
Q 015230 207 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA----GPMYQ 280 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~----~~~~~ 280 (411)
++|.++|++||+++|+||+|+ + |.. ..+.....+|++ ++||+++++.++|++++++++++.+... ...+.
T Consensus 179 ~~i~~l~~~~~~~li~Dea~~-~--g~~-~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1vjo_A 179 EGVGELCREFGTLLLVDTVTS-L--GGV-PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 254 (393)
T ss_dssp TTHHHHHHHHTCEEEEECTTT-T--TTS-CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred HHHHHHHHHcCCEEEEECCcc-c--cCc-CCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec
Confidence 999999999999999999997 3 111 111122345655 6779998655899999999988887421 11111
Q ss_pred ------------ccCC-CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee--ecceEE
Q 015230 281 ------------AGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFG 342 (411)
Q Consensus 281 ------------~~t~-~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~ 342 (411)
..++ +.++++++++.++++.+.+ ++++++++++.+++.+.|+++ .+.... ..+ .+.+++
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~~~~~~~ 331 (393)
T 1vjo_A 255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--GLSLHV-EKEYRLPTLTT 331 (393)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSS-CGGGBCSSEEE
T ss_pred CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--CCcccC-CccccCCcEEE
Confidence 1233 6788889988888887643 467788888888888888775 222211 111 234566
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeee---cCCCHHHHHHHHHHHHHHHH
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~---~~~t~~~i~~~i~~l~~~~~ 409 (411)
+.+.. ..+..++.+.|.++ ||.+.++. .+.+|++ ...+++++++++++|+++++
T Consensus 332 ~~~~~-------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 332 VCIPD-------------GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp EECCT-------------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EEcCC-------------CCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 65521 11236788999988 99998874 3457886 45678889999999998863
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-27 Score=226.39 Aligned_cols=296 Identities=11% Similarity=0.024 Sum_probs=200.7
Q ss_pred HHHHHHHHhhCC-CCCEEEEeCChHHHH--HHHHHHHHhc-c---------CCcEEEEEeCCcCCCchhhhhhcCCCCcc
Q 015230 79 NVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAF-T---------GRERIIKFEGCYHGHADPFLVKAGSGVAT 145 (411)
Q Consensus 79 ~~l~~~l~~~~~-~~~~v~~~~~g~~a~--~~al~~~~~~-~---------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~ 145 (411)
.++.+.+++.++ .+++|++|+|+++++ +.+++..... . .++.|++.+++|++.... ....|..+..
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~-~~~~g~~~~~ 159 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSI-TERFGFEMIS 159 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHH-HHHcCCEEEE
Confidence 344444444445 678999999999999 4777654221 2 168899999999865433 3344443333
Q ss_pred cCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHH-HHhCCEEEEe
Q 015230 146 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIFD 223 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~-~~~~~~li~D 223 (411)
++... .++ |++++++.++. .++++|+++|. +|++|.+.+ .+.+++|.++| ++||+++|+|
T Consensus 160 v~~~~-~g~--------------d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~-~~~~~~l~~~a~~~~~~~ii~D 221 (427)
T 3ppl_A 160 VPMNE-DGP--------------DMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVT-EDVAKRLSAMETAAPDFRVVWD 221 (427)
T ss_dssp EEEET-TEE--------------CHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCC-HHHHHHHHHCCCSSTTCEEEEE
T ss_pred eCCCC-CCC--------------CHHHHHHHHhc--CCCeEEEECCCCCCCCCccCC-HHHHHHHHHHHhhcCCCEEEEE
Confidence 32211 111 89999998852 46888888864 455676665 44499999999 9999999999
Q ss_pred cccccc-ccccC----cccc------ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHH
Q 015230 224 EVMTGF-RLAYG----GAQE------YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 292 (411)
Q Consensus 224 e~~~g~-~~g~~----~~~~------~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a 292 (411)
|+|+++ ..+.. .... ..+....+.||||.+.+|+|+||+++++++++.+.. .....+++.+++++.
T Consensus 222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~q~ 298 (427)
T 3ppl_A 222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTG---HAGIRGIGPNKVNQL 298 (427)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHHH
T ss_pred CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHH---HhhcccCCCCHHHHH
Confidence 999975 22211 1111 234445677999996689999999999999888763 223346777888888
Q ss_pred HHHHHHHH---Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeecceEEEEEecCCCCCcchhcccchHHHHH
Q 015230 293 AGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 366 (411)
Q Consensus 293 ~~~~~l~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (411)
++.++++. +.. ++.++.++++.+.+.+.|++.....+... .....|+++|+++... +..+
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~ 364 (427)
T 3ppl_A 299 AHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--------------TASR 364 (427)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--------------CHHH
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--------------hHHH
Confidence 88777653 111 44556666677777777766443333222 2234588999988431 1367
Q ss_pred HHHHHHHcCeEeccCC----------CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 367 FYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 367 ~~~~l~~~Gi~v~~~~----------~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
+.+.|.++||.+.+++ .+.+|+++.. +++++++++++|.+++++
T Consensus 365 ~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 365 VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLL 419 (427)
T ss_dssp HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999832 2447887665 899999999999998865
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=210.95 Aligned_cols=323 Identities=18% Similarity=0.210 Sum_probs=217.1
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---C-----CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
.|+|+.++ ++.+|++++++.++++...... + ......++.+++++.++ .++++++|+||++|+..
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 45665554 3589999999999998631111 1 12345778888888887 56799999999999999
Q ss_pred HHHHHHh--ccCCcEEEEEeCCcCCCchhhh--hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 108 VLRLARA--FTGRERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 108 al~~~~~--~~~~~~vi~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+++.+.. ..+++.|++.+++|++...... ...|..+..++... .+. .|++++++.++ ++
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i~---~~ 139 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGV-------------VKLEELEKLVD---ED 139 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSC-------------BCHHHHHHHCC---TT
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CCc-------------cCHHHHHHHhC---CC
Confidence 9986532 1466889999999887544442 23344444433221 111 18999998886 36
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC--CEEEEecccccc-ccccCccccccCCCcchh--hhhhhccC-Cc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-GL 257 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~--~~li~De~~~g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~ 257 (411)
+++|+++++++++|.+.+ +++|.++|++|| ++||+||+|+ + .. ...... ..+|++ ++||.++. |
T Consensus 140 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~~--~~~di~~~s~sK~~g~~G- 209 (384)
T 1eg5_A 140 TFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLEK--LEVDYASFSAHKFHGPKG- 209 (384)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCTT--TCCSEEEEEGGGGTSCTT-
T ss_pred CeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCchh--cCCCEEEecHHHhcCCCc-
Confidence 888888888888999988 999999999999 9999999997 3 11 111222 235654 67798773 5
Q ss_pred ccccccccHHH--HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 258 PVGAYGGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 258 ~~g~~~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
+|++++++++ ...+..........+++.++++++++.++++.+.+ ++++++++++.+++.+.|++. ++...
T Consensus 210 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 284 (384)
T 1eg5_A 210 -VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL----GAHII 284 (384)
T ss_dssp -CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT----TCEEC
T ss_pred -eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC----CeEEe
Confidence 7999888765 22221100001123567788898888888887543 566677777788887777652 22111
Q ss_pred Ee---eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------------Cccee
Q 015230 334 GG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGF 387 (411)
Q Consensus 334 ~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~ 387 (411)
.. ..+.++++.+.+. +..++.+.|.++||.+.++. .+.+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLSVSFPNI--------------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEEEECTTC--------------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEEEEeCCC--------------CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 11 1245666655311 13578889999999999853 13578
Q ss_pred eecC--CCHHHHHHHHHHHHHHHHhC
Q 015230 388 TSLA--HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 388 ~~~~--~t~~~i~~~i~~l~~~~~~~ 411 (411)
+++. +|++++++++++|+++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8765 79999999999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=216.54 Aligned_cols=317 Identities=14% Similarity=0.091 Sum_probs=215.4
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCCE-EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~-v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.++++++++.+.+.. .+. ...+...++.+++++.++ ..++ +++++||++|++.+++.+ ..+++.|++.+++||
T Consensus 24 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~~ 99 (411)
T 3nnk_A 24 ADPRVLRAMSSQLIG--QYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGRF 99 (411)
T ss_dssp CCHHHHHHHTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHH
T ss_pred CCHHHHHHhhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCch
Confidence 677787777654311 111 113456788888888887 4444 889999999999999864 567789999999998
Q ss_pred CC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+. ........|..+..++.+....+ |++++++.+++. ++++|+++++++++|.+.+ +++
T Consensus 100 ~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 159 (411)
T 3nnk_A 100 GHLLCEIARRCRAEVHTIEVPWGEVF--------------TPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LAE 159 (411)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTCCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCC--------------CHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HHH
Confidence 74 22233344544444333211111 899999999842 5778888888888999888 999
Q ss_pred HHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCC---Ccc------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---PMY------ 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~---~~~------ 279 (411)
|.++|++||+++|+||+|+.. ......+.++.+..+.+++|+++++.++|++++++++++.+.... +.+
T Consensus 160 i~~l~~~~~~~li~Dea~~~~--~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 237 (411)
T 3nnk_A 160 LGEICRRYDALFYTDATASLG--GNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHR 237 (411)
T ss_dssp HHHHHHHHTCEEEEECTTTBT--TBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCC
T ss_pred HHHHHHHcCCEEEEECCcccC--CcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccc
Confidence 999999999999999999621 111222333444445678899877667999999999988776432 000
Q ss_pred ------------------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 280 ------------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 280 ------------------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
.....+.+..++++..++++.+.+ ++++++++++.+++.+.|+++. .....
T Consensus 238 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~ 315 (411)
T 3nnk_A 238 DGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG--LETFG 315 (411)
T ss_dssp CCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBCS
T ss_pred cccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeCC
Confidence 112345677788887778776554 4677788888888888888752 11111
Q ss_pred E-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHH
Q 015230 333 C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITA 403 (411)
Q Consensus 333 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~ 403 (411)
. ....+.++++.+.+ ..+..++.+.|.++ ||.+.++. ...+|+++ .+|++++++++++
T Consensus 316 ~~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~ 382 (411)
T 3nnk_A 316 DLKHKMNNVLGVVIPQ-------------GINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSA 382 (411)
T ss_dssp CGGGBCSSEEEEECCT-------------TCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred CcccccccEEEEECCC-------------CCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHH
Confidence 1 01235677776632 11236788888877 99998763 23578764 4589999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 383 l~~~l~~ 389 (411)
T 3nnk_A 383 LEAVLNY 389 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=221.00 Aligned_cols=338 Identities=11% Similarity=0.044 Sum_probs=208.1
Q ss_pred CCCE-EEeccCCccccccCC-CcHHHHHHHHHH---HH----cC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEE
Q 015230 34 DGNE-YIDYVGSWGPAIIGH-ADDQVLAALGET---MK----KG-TSFG---APCLLENVLAEMVISAVP---SIEMVRF 97 (411)
Q Consensus 34 ~g~~-~~d~~~~~~~~~~g~-~~~~v~~a~~~~---l~----~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~ 97 (411)
+++. ++||..+ .|+.+ .++.+.+++.++ +. .. ..|. +..++++++++++..... ..++|++
T Consensus 46 ~~~~~~i~l~~g---~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~ 122 (448)
T 3meb_A 46 DTNPKKVNLGVG---AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIAS 122 (448)
T ss_dssp CCCTTCEEESSC---CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCCeEEeecc---cccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEE
Confidence 4443 6898888 56443 444444444444 32 11 1221 234566666666621111 1589999
Q ss_pred --eCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCC-CCCCCCCCceeecCCCCHH
Q 015230 98 --VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 98 --~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~ 171 (411)
|+||++|+..++.+...+.+++.|++.+++|+........ ..|..+..++..+.. +... |++
T Consensus 123 ~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~------------d~e 190 (448)
T 3meb_A 123 CQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEI------------DFS 190 (448)
T ss_dssp EEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSB------------CHH
T ss_pred EECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCc------------CHH
Confidence 9999999998665444555778899999998765433331 445555554432221 1110 899
Q ss_pred HHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Ccccccc-CCCcc-
Q 015230 172 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF-GVTPD- 245 (411)
Q Consensus 172 ~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~~~~-~~~~d- 245 (411)
++++.+++.+.+.+++++...+|++|...+ .+.+++|.++|++||+++|+||+|.+| ..+. ......+ +..++
T Consensus 191 ~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (448)
T 3meb_A 191 NTKKDIQSAPEKSIFLFHACAHNPSGIDFT-EAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEV 269 (448)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCE
T ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCCcCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcE
Confidence 999999865445667666666777776654 555999999999999999999999987 4331 1111111 12233
Q ss_pred --hhhhhhhcc-CCcccccc--cc---------cH----HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH------
Q 015230 246 --LTTLGKIIG-GGLPVGAY--GG---------RR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------ 301 (411)
Q Consensus 246 --~~~~sK~~~-~G~~~g~~--~~---------~~----~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~------ 301 (411)
+.|+||.++ .|+|+||+ ++ ++ ++++.+.. .....+.+.+.+++.++.++++..
T Consensus 270 i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~ 346 (448)
T 3meb_A 270 LVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL---QIRKTWSMSAIHGAYIVQVIVHDKRLLQMF 346 (448)
T ss_dssp EEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHH
T ss_pred EEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH---HHhcccCCccHHHHHHHHHHhcChHHHHHH
Confidence 558999999 69999997 54 45 55554441 112334566777777777765421
Q ss_pred -hc-CChHHHHHHHHHHHHHHHHHHHHhcC------CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH
Q 015230 302 -KE-PGTYEYLNKITGELTQGIIDAGKKAG------HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373 (411)
Q Consensus 302 -~~-~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 373 (411)
+. ++++++++++.+++.+.|+++... + +.......|++.|..+. .+.+...+.+
T Consensus 347 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~ll~~ 408 (448)
T 3meb_A 347 YDNVKEMSARIHRMRSLLHASLAKRKTP-GPGSKGTWDHILTAIGMFTFTGLT-----------------PEHVDYLKEK 408 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CSTTTCCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcCcccccceeCCCceEEEecCCC-----------------HHHHHHHHHh
Confidence 11 455666777777777777664110 1 11112334666665441 1333444467
Q ss_pred cCeEeccCCCcceeeecCC-CHHHHHHHHHHHHHHHHhC
Q 015230 374 EGVYFAPSQFEAGFTSLAH-SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 374 ~Gi~v~~~~~~~~~~~~~~-t~~~i~~~i~~l~~~~~~~ 411 (411)
+||++.++. .|+++.. +++++++++++|.++++++
T Consensus 409 ~gV~v~~G~---gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 409 WSIYLVKAG---GRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp HCEEECSGG---GEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred CCEEEeCCC---cEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 799999964 3887655 8888999999999998753
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=211.33 Aligned_cols=327 Identities=14% Similarity=0.130 Sum_probs=217.3
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCC---CHHHHHHHHHHHhhCCC---CCEEEEeCChHHHHHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~---~~~v~~~~~g~~a~~~al~~ 111 (411)
+++|..+ +.+ .+|++++++.+.+. +.+. .+...++.+++++.++. .+++++|+||++|+..+++.
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 4666665 333 78999998876432 1111 14456777777777762 24899999999999999985
Q ss_pred HHhccCCcEEEEEeCCcCCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 112 ARAFTGRERIIKFEGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
+ ..+++.|++.++.+|+. ........|..+..++.... + ..|++++++.+++.+ ++++|++.
T Consensus 76 ~--~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~l~~~~-~~~~v~~~ 138 (366)
T 1m32_A 76 A--LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV-A-------------RPDVQAIDAILNADP-TISHIAMV 138 (366)
T ss_dssp S--CCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT-S-------------CCCHHHHHHHHHHCT-TCCEEEEE
T ss_pred h--cCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC-C-------------CCCHHHHHHHHhcCC-CeEEEEEe
Confidence 4 24556788888777754 22333444555444333211 1 128999999998642 35566566
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI 268 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~ 268 (411)
..++++|.+.+ +++|.++|++||+++|+||+|+..... .....+ .+|++ ++||+++++.++|++++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~--~~~~~~--~~di~~~s~~K~~~~~~g~G~~~~~~~~ 210 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGGIP--MDIAAL--HIDYLISSANKCIQGVPGFAFVIAREQK 210 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCTTTT--TCSEEEEESSSTTCCCSSEEEEEEEHHH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCccccCcC--cccccc--CccEEEecCcccccCCCceEEEEECHHH
Confidence 66667888888 999999999999999999999722111 111122 35554 789999765567999999998
Q ss_pred HHHhcCCCCccc---------------ccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 269 MEMVAPAGPMYQ---------------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 269 ~~~~~~~~~~~~---------------~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
++.+......+. ...++.++.+++++.++++.+.+ ++++++++++.+++.+.|+++ .+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~ 288 (366)
T 1m32_A 211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFN 288 (366)
T ss_dssp HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCe
Confidence 887754211110 01357788888888888876643 346777888888888888775 222
Q ss_pred CceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---Ccceeeec--CCCHHHHHHHHHH
Q 015230 330 HAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSL--AHSSDDIQHTITA 403 (411)
Q Consensus 330 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~~~--~~t~~~i~~~i~~ 403 (411)
..... ...|+++++.+.... ..+..++.+.|.++||.+.++. .+.+|+++ .+|++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 357 (366)
T 1m32_A 289 TLLDDELHSPIITAFYSPEDP-----------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTA 357 (366)
T ss_dssp BSSCGGGBCSSEEEEECCCCT-----------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHH
T ss_pred eccCchhcCceEEEEEcCccC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHH
Confidence 21110 124668888874200 1123678999999999998874 34578754 4689999999999
Q ss_pred HHHHHHhC
Q 015230 404 AEKVLRQI 411 (411)
Q Consensus 404 l~~~~~~~ 411 (411)
|+++++++
T Consensus 358 l~~~~~~~ 365 (366)
T 1m32_A 358 IRTAMYWT 365 (366)
T ss_dssp HHHHCTTC
T ss_pred HHHHHHhc
Confidence 99987653
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=213.48 Aligned_cols=297 Identities=13% Similarity=0.048 Sum_probs=202.3
Q ss_pred CHHHHHHHHHHHhhCC-CCCEEE-EeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc-hhhhhhcCCCCcccCCCCC
Q 015230 75 CLLENVLAEMVISAVP-SIEMVR-FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDS 151 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~~~~v~-~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 151 (411)
.+...++.+++++.++ ..+.++ +++||++|+..+++.+ ..+++.|++.+++||+.. .......|..+..++....
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 120 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG 120 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCC
Confidence 4457889999999998 556555 8999999999999854 567789999999998732 2233344554444333211
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~ 231 (411)
..+ |++++++.+++. ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .
T Consensus 121 ~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~---~ 177 (416)
T 3isl_A 121 TVF--------------DPEDIIREIKKV--KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT---I 177 (416)
T ss_dssp CCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT---T
T ss_pred CCC--------------CHHHHHHHHhhC--CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc---c
Confidence 111 899999999742 4678888888888998888 9999999999999999999996 1
Q ss_pred cc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCC----------------------------------
Q 015230 232 AY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---------------------------------- 276 (411)
Q Consensus 232 g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~---------------------------------- 276 (411)
|. ....+.++.+..+.+++|++.++.++|++++++++++.+.+.+
T Consensus 178 ~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 257 (416)
T 3isl_A 178 GGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDY 257 (416)
T ss_dssp TTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHH
T ss_pred cCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhh
Confidence 11 1112223333334577899887667899999999888776321
Q ss_pred -CcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCCC
Q 015230 277 -PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVY 351 (411)
Q Consensus 277 -~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 351 (411)
........+.+..++++..++++.+.. ++++++++++.+++.+.|+++. +...... ...+.++++.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~---- 331 (416)
T 3isl_A 258 WSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMG--LRLFGDDSCKMPVVTCVEIPG---- 331 (416)
T ss_dssp TSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBCSCGGGBCTTEEEEECCT----
T ss_pred hcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeccCccccCCcEEEEeCCC----
Confidence 001112335577777777777776544 4677788888888888888741 1111110 1125677777632
Q ss_pred CcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec--CCCHHH-HHHHHHHHHHHHHhC
Q 015230 352 NFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--AHSSDD-IQHTITAAEKVLRQI 411 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~--~~t~~~-i~~~i~~l~~~~~~~ 411 (411)
..+..++.+.|.++ ||.+.++. .+.+|+++ ..++++ +++++++|+++++++
T Consensus 332 ---------~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 332 ---------GIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp ---------TCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 11236788999887 99999753 34578864 234455 999999999988753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=205.24 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=216.1
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CC-----CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GA-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~ 105 (411)
+..|+|+.++ . ..+|++++++.+.++..... .+ ..+...++.+++++.++ .++++++|+|+++++
T Consensus 26 ~~~~ld~~~~---~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAG---M---LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGC---C---CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCc---C---CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 4677776665 2 47899999999999873211 12 13456788888888887 567999999999999
Q ss_pred HHHHHHHH-hccCCcEEEEEeCCcCCCchhhhhh---cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 106 MGVLRLAR-AFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 106 ~~al~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
..+++... ...+++.|++..++|++........ .|..+..++.....+.. |++++++.++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~-------------d~~~l~~~l~--- 163 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGEL-------------PTWQWESLIS--- 163 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCC-------------CGGGHHHHCC---
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCc-------------CHHHHHHHhC---
Confidence 99887431 2456788999999998765554432 35544443332111111 7888888886
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC-ccccccCCCcchhhhhhhccCCcccc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVG 260 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~-~~~~~~~~~~d~~~~sK~~~~G~~~g 260 (411)
+++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .|.. .....++.+.-+.|++|.++++ +|
T Consensus 164 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~---~g~~~~~~~~~~~d~~~~s~~K~~g~~--~G 234 (406)
T 3cai_A 164 KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA---APYRLLDIRETDADVVTVNAHAWGGPP--IG 234 (406)
T ss_dssp TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT---TTTCCCCHHHHCCSEEEEEGGGGTSCS--CE
T ss_pred CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc---cCCCCCCchhcCCCEEEeehhhhcCCC--cC
Confidence 36889999998999999988 9999999999999999999997 2211 1222334333345789987643 89
Q ss_pred -cccccHHHHHHhcCCCCcc------cccCCCCCHHHHHHHHHHHHHHhc-----------------CChHHHHHHHHHH
Q 015230 261 -AYGGRRDIMEMVAPAGPMY------QAGTLSGNPLAMTAGIHTLKRLKE-----------------PGTYEYLNKITGE 316 (411)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~~~a~~~~~l~~~~~-----------------~~~~~~~~~~~~~ 316 (411)
++++++++++.+.+....+ .....+.++.+++++.++++.+.. ++++++++++.++
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (406)
T 3cai_A 235 AMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDY 314 (406)
T ss_dssp EEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999888776432110 011345677777777777776653 2344555555666
Q ss_pred HHHHHHHHHHhcCCceEEe---eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------
Q 015230 317 LTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------- 382 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------- 382 (411)
+.+.|+++ +...... ..+.++++.+.+. +..++.+.|.++||.+.++.
T Consensus 315 l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~ 376 (406)
T 3cai_A 315 LMVSLRSL----PLVMLIGRPEAQIPVVSFAVHKV--------------PADRVVQRLADNGILAIANTGSRVLDVLGVN 376 (406)
T ss_dssp HHHHHHTC----TTEEECCCCSSBCSEEEEEETTB--------------CHHHHHHHHHHTTEECEECCSCHHHHHHTTT
T ss_pred HHHHHhcC----CCeEEcCCccccCCEEEEEECCc--------------CHHHHHHHHHHCCcEEecCChHHHHHHcCCC
Confidence 66665542 2221111 1244677766311 13678889999999998764
Q ss_pred --CcceeeecC--CCHHHHHHHHHHHHH
Q 015230 383 --FEAGFTSLA--HSSDDIQHTITAAEK 406 (411)
Q Consensus 383 --~~~~~~~~~--~t~~~i~~~i~~l~~ 406 (411)
...+|+++. +|++++++++++|++
T Consensus 377 ~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 377 DVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 245788644 589999999999875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=214.72 Aligned_cols=316 Identities=15% Similarity=0.097 Sum_probs=214.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC--CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|++++++.+.+.... .....+...++.+++++.++ .. +++++|+||++|+. +++. ...+++.|++.+++||
T Consensus 13 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~--~~~~gd~vi~~~~~~~ 88 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS--LLKPNDKILVVSNGVF 88 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG--GCCTTCEEEEECSSHH
T ss_pred CCHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh--hcCCCCEEEEecCCcc
Confidence 67888888766554311 11124566788888988887 44 88999999999999 8864 2456788999999998
Q ss_pred CCchhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+...... ...|..+..++......+ |++++++.++++ ++++|+++++++++|.+.+ +++
T Consensus 89 ~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 148 (384)
T 3zrp_A 89 GDRWEQIFKRYPVNVKVLRPSPGDYV--------------KPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKD 148 (384)
T ss_dssp HHHHHHHHTTSSCEEEEECCSTTCCC--------------CHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCcEEEecCCCCCCC--------------CHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHH
Confidence 7422221 233444444333221111 899999999853 5888999988899999988 999
Q ss_pred HHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHh-cCCCC---------c
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMV-APAGP---------M 278 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~-~~~~~---------~ 278 (411)
|.++|++||+++|+||+|+... .......++.+..+.+++|+++++.++|++++++++++.+ .+... .
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGA--EEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNW 226 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTT--SCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHH
T ss_pred HHHHHHhcCCEEEEECcccccC--ccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHH
Confidence 9999999999999999997210 1111222233333447789998766699999999988777 21100 0
Q ss_pred -----c----cccCC-CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceE--EeeecceEEE
Q 015230 279 -----Y----QAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGF 343 (411)
Q Consensus 279 -----~----~~~t~-~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~~ 343 (411)
. ....+ +.+..++++..++++.+.. ++++++++++.+++.+.|+++ .+..... ....+.++++
T Consensus 227 ~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~ 304 (384)
T 3zrp_A 227 LPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVTGV 304 (384)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEEEE
T ss_pred HHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEEEE
Confidence 0 11122 4566677777677776544 467788888888888888876 2221111 0123667777
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.. .+..++.+.|.++||.+.++.. +.+|++ ..+|++++++++++|++++++
T Consensus 305 ~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 305 ILKV--------------ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp ECSS--------------SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCC--------------CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 7632 1236889999999999998752 457775 447999999999999998875
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=227.96 Aligned_cols=344 Identities=12% Similarity=0.019 Sum_probs=208.6
Q ss_pred ccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhh----CC--CCCEEEEeCChHHHHHHHHHHHH--
Q 015230 45 WGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISA----VP--SIEMVRFVNSGTEACMGVLRLAR-- 113 (411)
Q Consensus 45 ~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~----~~--~~~~v~~~~~g~~a~~~al~~~~-- 113 (411)
++.+..++.+|++++++.+++.... ...+..++++.+++++.+. .. ..+++++|+|+++|+..+++...
T Consensus 108 l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 108 YCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhh
Confidence 3334556678899888888887521 1224467888999998666 22 24799999999999999997421
Q ss_pred -hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 114 -AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 114 -~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
...+++.|++..++|++..... ...|.++..++... .... .+ |++++++.++ .++++|+++
T Consensus 188 ~l~~~gd~Viv~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~---------~~---d~~~l~~~l~---~~~k~v~l~ 251 (533)
T 3f6t_A 188 HLLKKGDKIAINEPIFTPYLRIP-ELKDYELVEVDLHSYEKNDW---------EI---EPNEIEKLKD---PSIKALIVV 251 (533)
T ss_dssp TSSCTTCEEEEESSCCHHHHTSG-GGGGSEEEEECCCEETTTTS---------EE---CHHHHHHHSC---TTEEEEEEE
T ss_pred hccCCcCEEEEcCCCcHHHHHHH-HHcCCeEEEEEecCCcccCC---------CC---CHHHHHHHhC---CCCeEEEEe
Confidence 1345678999999988644333 33344333333221 1111 01 7899998875 357777765
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHH-HhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~-~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
.++|++|.+.+ .+.+++|+++|+ +||+++|+||+|.+| ..+........+....+.||||.++ .|+|+||++++++
T Consensus 252 ~p~NPtG~~~~-~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 252 NPTNPTSKEFD-TNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEK 330 (533)
T ss_dssp SSCTTTCBCCC-HHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESS
T ss_pred CCCCCCccccC-HHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcH
Confidence 55666776654 445999999999 589999999999988 4332221111223355679999998 7999999988766
Q ss_pred -----HHHHhcC-----------------------------CCCcccccCCCCCHHHHHHHH-HHHHHHh-------c--
Q 015230 268 -----IMEMVAP-----------------------------AGPMYQAGTLSGNPLAMTAGI-HTLKRLK-------E-- 303 (411)
Q Consensus 268 -----~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~a~~~-~~l~~~~-------~-- 303 (411)
+++.+.+ ........+.+.+++++.++. .++..+. .
T Consensus 331 ~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~ 410 (533)
T 3f6t_A 331 NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDP 410 (533)
T ss_dssp CHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCH
T ss_pred HHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHH
Confidence 4433210 001122335566666666622 1223232 1
Q ss_pred --CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcch----hcccchHHHHHHHHHHHHcCeE
Q 015230 304 --PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED----AKKSETTKFARFYRGMLEEGVY 377 (411)
Q Consensus 304 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gi~ 377 (411)
+++++.++++.+++.+.|. .++.......|+++|+++.......... .........+.+.+.+.++||.
T Consensus 411 ~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~ 485 (533)
T 3f6t_A 411 YIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVV 485 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEE
Confidence 3344445555555555553 2433333456778888774210000000 0000001123344555678999
Q ss_pred eccCC-----CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 378 FAPSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 378 v~~~~-----~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
+.|+. .+.+|++++ .+++++++++++|.+++++
T Consensus 486 v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 486 LVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp SCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 99974 345899877 5999999999999998865
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=209.79 Aligned_cols=318 Identities=12% Similarity=0.046 Sum_probs=202.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC--CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|++++++.+++... ......+..+++.+++++.++ .. +.+++|+||++|++.+++.+ ..+++.|++.+++|+
T Consensus 30 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--~~~gd~vi~~~~~~~ 106 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPYF-RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--FTKKDKVLVIDGGSF 106 (376)
T ss_dssp CCHHHHHHHTSCCCCC-SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH--CCTTCCEEEEESSHH
T ss_pred CcHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc--cCCCCeEEEEeCChh
Confidence 6788888876654321 011113556788888888876 32 34455899999999999864 356788999988888
Q ss_pred CCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.... .....|..+..++.+....+ |++++++.++ +++++++++++++++|.+.+ +++
T Consensus 107 ~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~ 165 (376)
T 3f0h_A 107 GHRFVQLCEIHEIPYVALKLEHGKKL--------------TKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----TMM 165 (376)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTCCC--------------CHHHHHTTTT---SCCCEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCceEEEeCCCCCCC--------------CHHHHHHhhc---cCceEEEEecccCCcceecC----HHH
Confidence 74322 12233444444333221111 8888887654 46778888888888999888 999
Q ss_pred HHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc-c--------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM-Y-------- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~-~-------- 279 (411)
|.++|++||+++|+||+|+.. +..+..+.++.+..+.+++|+++++..+|++++++++++.+...... +
T Consensus 166 i~~l~~~~~~~li~D~~~~~~--~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (376)
T 3f0h_A 166 IGEFCKKNNMFFVCDCVSAFL--ADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDAL 243 (376)
T ss_dssp HHHHHHHTTCEEEEECTTTTT--TSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHH
T ss_pred HHHHHHHcCCEEEEEcCcccc--CccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHH
Confidence 999999999999999999743 11123344555556678999998655578889999998887642111 0
Q ss_pred -----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCc
Q 015230 280 -----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNF 353 (411)
Q Consensus 280 -----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 353 (411)
....++.+..+++++.++++.+.+....+++.++.+..++.+.+.....+...... ..+.++.+.. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~--~----- 316 (376)
T 3f0h_A 244 KNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHP--T----- 316 (376)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEE--S-----
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeC--C-----
Confidence 11244556656566777777665432334444444444444444333333211111 1222322221 1
Q ss_pred chhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 354 EDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+..++.+.|.++ ||.+.++. .+.+|++ ..+|++++++++++|++++++
T Consensus 317 -------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 317 -------TANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp -------SSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred -------CCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 11236788999998 99998763 3457885 467999999999999998864
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=219.48 Aligned_cols=329 Identities=14% Similarity=0.040 Sum_probs=223.4
Q ss_pred cccCCCcHHHHHHHHHHHHcC----C-----CCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-c
Q 015230 48 AIIGHADDQVLAALGETMKKG----T-----SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-T 116 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~----~-----~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-~ 116 (411)
+++|..++.+.+++.++++.. . .+....+..+++.+++++.++ .+++|++|+|+++++..+++..... .
T Consensus 74 ~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~ 153 (465)
T 3e9k_A 74 NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTP 153 (465)
T ss_dssp TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCS
T ss_pred CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccC
Confidence 456766777777777766541 1 111233555778888888887 6789999999999999999854221 2
Q ss_pred CCcEEEEEeCCcCCCchhhh---hhcCCCCcc--cC-CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 117 GRERIIKFEGCYHGHADPFL---VKAGSGVAT--LG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
++++|++..++||+...... ...|..+.. +. .+...... -|+++++++++++.+++++|+++
T Consensus 154 ~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~------------~d~~~l~~~i~~~~~~~~lv~~~ 221 (465)
T 3e9k_A 154 KRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEET------------LRIEDILEVIEKEGDSIAVILFS 221 (465)
T ss_dssp SSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSS------------CCHHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCc------------cCHHHHHHHHHhcCCCeEEEEEe
Confidence 35679999999987554332 223443221 00 01111110 08999999998643478999999
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCC-cccccccccHHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDI 268 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~ 268 (411)
++++++|.+.+ +++|.++|++||+++|+|++|+ .|. ......++.+..+.|++|++++| .++|++++++++
T Consensus 222 ~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~---~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~ 294 (465)
T 3e9k_A 222 GVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA---VGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH 294 (465)
T ss_dssp SBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGG
T ss_pred CcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh---cCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHH
Confidence 99999999998 9999999999999999999997 221 12222334433345788999644 468999888888
Q ss_pred HHHhcCCCCccccc----------------------CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH
Q 015230 269 MEMVAPAGPMYQAG----------------------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 269 ~~~~~~~~~~~~~~----------------------t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~ 323 (411)
++.+.+....+.++ ..+.+.+++++..++++.+.+ ++++++.+++.+++.+.|++
T Consensus 295 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 374 (465)
T 3e9k_A 295 AHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKH 374 (465)
T ss_dssp TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 77665432221111 115677888888888887654 56778888888888888877
Q ss_pred HHHh-------cCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee---e
Q 015230 324 AGKK-------AGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT---S 389 (411)
Q Consensus 324 ~~~~-------~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~---~ 389 (411)
+... .++.. +....|.++++.+.. + ..++.+.|.++||.+.....+.+|+ +
T Consensus 375 ~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-~--------------~~~l~~~L~~~Gi~v~~~~~~~iRis~~~ 439 (465)
T 3e9k_A 375 NYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-P--------------NKDVFQELEKRGVVCDKRNPNGIRVAPVP 439 (465)
T ss_dssp HCC---------CEEECSCSSGGGBCSCEEEEECC-T--------------TCCHHHHHHTTTEECEEETTTEEEEBCCT
T ss_pred hccccccccCCCCeEEeCCCCHhhcccEEEEEecC-C--------------HHHHHHHHHHCCEEEecCCCCEEEEeCcc
Confidence 5210 11111 112248888888741 1 1468889999999998766567887 3
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 015230 390 LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++++++++++|++++++
T Consensus 440 ~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 440 LYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp TTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 678999999999999998864
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=208.99 Aligned_cols=313 Identities=15% Similarity=0.107 Sum_probs=211.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
.+|++++++.+.+.. ..++ .+...++.+++++.++ . .+++++|+||++|+..+++. +.+ ++|++.+++
T Consensus 11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~---~~~-d~vl~~~~~ 83 (353)
T 2yrr_A 11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLAN---LDR-GPVLVLVNG 83 (353)
T ss_dssp CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHT---CSC-CCEEEEECS
T ss_pred CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHH---hcC-CcEEEEcCC
Confidence 678898888777654 1222 3446888999998887 3 57899999999999999984 334 789999999
Q ss_pred cCCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 128 YHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 128 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
||+. ........|..+..++.... +. .|++++++.++++ ++++|+++++++++|.+.+ +
T Consensus 84 ~~~~~~~~~~~~~g~~~~~v~~~~~-~~-------------~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~ 143 (353)
T 2yrr_A 84 AFSQRVAEMAALHGLDPEVLDFPPG-EP-------------VDPEAVARALKRR--RYRMVALVHGETSTGVLNP----A 143 (353)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTT-SC-------------CCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----H
T ss_pred CchHHHHHHHHHcCCceEEEeCCCC-CC-------------CCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----H
Confidence 9874 11122334554444333211 11 1899999999853 4667888888888898888 9
Q ss_pred HHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc-------
Q 015230 207 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM------- 278 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~------- 278 (411)
++|.++|++||+++|+||+|+ + ... .....++.+.-+.+++|+++++..+|++++++++++.+......
T Consensus 144 ~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~ 220 (353)
T 2yrr_A 144 EAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARV 220 (353)
T ss_dssp HHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHH
T ss_pred HHHHHHHHHcCCeEEEEcCcc-ccccc--ccccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHH
Confidence 999999999999999999995 3 221 12222333323446789887544479999999988777520000
Q ss_pred -----ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC
Q 015230 279 -----YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 350 (411)
Q Consensus 279 -----~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 350 (411)
......+.+..+++++.++++.+.. ++++++++++.+++.+.|+++ .+.........+.++++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~--- 295 (353)
T 2yrr_A 221 AEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLVVRPPE--- 295 (353)
T ss_dssp HHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEEEECCT---
T ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEEEECCC---
Confidence 0112345677777777777776543 456777888888888888764 111111101145666777631
Q ss_pred CCcchhcccchHHHHHHHHHHHHcCeEeccCC----Ccceeeec--CCCHHHHH-HHHHHHHHHHHh
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQ-HTITAAEKVLRQ 410 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~--~~t~~~i~-~~i~~l~~~~~~ 410 (411)
..+..++.+.|.++||.+.++. .+.+|+++ ..++++++ +++++|++++++
T Consensus 296 ----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 296 ----------GVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ----------TCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ----------CCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1123678999999999998764 34578864 46888898 999999998864
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=217.67 Aligned_cols=333 Identities=13% Similarity=0.092 Sum_probs=209.3
Q ss_pred CEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEE--EeCChHHHH
Q 015230 36 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVR--FVNSGTEAC 105 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~--~~~~g~~a~ 105 (411)
..++||..+ .|+++ .+|.+.+++.++..... .|. +..++++.+++++..... ..+++. .+.+|++++
T Consensus 41 ~~~i~l~~g---~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 41 KRKVNLSIG---VYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SSCEECCCS---SCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred cCceeeeee---EEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 467999988 77555 67778888877743321 221 225667777777643221 156774 499999999
Q ss_pred HHHHHHHHhccC-CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 106 MGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+.+..+++.+.+ ++.|++.+++|++. .......|..+..++.....+.. .|++++++.+++.+++.
T Consensus 118 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~~~~ 184 (409)
T 4eu1_A 118 RIGGDLLNRFVANCNRIYGPDVGYPNH-ESIFAKAGMELTPYSYYDPATKG------------LNLAGMLECLDKAPEGS 184 (409)
T ss_dssp HHHHHHGGGTSSSCCEEEEESSCCTHH-HHHHHHTTCEEEEECCEETTTTE------------ECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhH-HHHHHHcCCeEEEEEeecCcCCc------------CcHHHHHHHHHhCCCCc
Confidence 988766555544 58899988888754 33344445544443331111110 18999999998654456
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Cccc-cccCCCcch---hhhhhhcc-C
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQ-EYFGVTPDL---TTLGKIIG-G 255 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~-~~~~~~~d~---~~~sK~~~-~ 255 (411)
++++++..+|++|.+.+ .+.+++|.++|++||+++|+||+|.++ ..+. .... ...+..+++ .||||.++ +
T Consensus 185 ~~i~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 263 (409)
T 4eu1_A 185 VILVHACAHNPTGVDPT-HDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY 263 (409)
T ss_dssp EEEEESSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG
T ss_pred EEEEECCCCCCCCCCCC-HHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCc
Confidence 66665544566665554 455999999999999999999999988 4331 1111 112333443 48999999 7
Q ss_pred Ccccccc---cccHH----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-------hc-CChHHHHHHHHHHHHHH
Q 015230 256 GLPVGAY---GGRRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQG 320 (411)
Q Consensus 256 G~~~g~~---~~~~~----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-------~~-~~~~~~~~~~~~~~~~~ 320 (411)
|+|+||+ +++++ +++.+.. .....+.+.+++++.++.++++.. +. ++++++++++.+++.+.
T Consensus 264 G~riG~~~~v~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 264 GHRCGALHISTASAEEAKRLVSQLAL---LIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHHH---HHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 66777 5555441 112335566788888888777632 11 55667777888888877
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeec-CCCHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL-AHSSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~-~~t~~~i~~ 399 (411)
|+++.....+.......|+++|+.+. .+.+.+.+.++||.+.|+. |+++ ..+++++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gv~v~p~~----Ri~~~~~~~~~i~~ 399 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGMMAYTGLT-----------------REQVELLRSEYHIYMTLNG----RAAVSGLNSTNVEY 399 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSSEEECCCC-----------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHH
T ss_pred HHhcCCCCCcceecCCceEEEEeCCC-----------------HHHHHHHHHcCCEEEcCCC----EEEEEecCHhhHHH
Confidence 77652000021112334666664331 0233344456799999874 5543 457788999
Q ss_pred HHHHHHHHHH
Q 015230 400 TITAAEKVLR 409 (411)
Q Consensus 400 ~i~~l~~~~~ 409 (411)
++++|+++++
T Consensus 400 ~~~~l~~~l~ 409 (409)
T 4eu1_A 400 VSQAIHNVTK 409 (409)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998763
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=215.64 Aligned_cols=337 Identities=11% Similarity=0.032 Sum_probs=210.6
Q ss_pred CEEEeccCCccccccCC--CcHHHHHHHHHHH-HcC--CCC---CCCCHHHHHHHHHHHhhCC---CCC--EEEEeCChH
Q 015230 36 NEYIDYVGSWGPAIIGH--ADDQVLAALGETM-KKG--TSF---GAPCLLENVLAEMVISAVP---SIE--MVRFVNSGT 102 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l-~~~--~~~---~~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~ 102 (411)
..++||..+...++-+. .++.++++.. .+ +.. ..| .+..++++++++++..... ..+ ++++|+|++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 35789888743233332 5677888766 43 332 123 3457889999999876553 234 469999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+|+..++++...+.+ +.|++.+|+|+... ......|..+..++..+..++. + |++++++.+++.+
T Consensus 108 ~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~~---------~---d~~~l~~~l~~~~- 172 (405)
T 3k7y_A 108 GAIFVLLEFLKMLNV-ETLYVTNPPYINHV-NMIESRGFNLKYINFFDYNLID---------I---NYDLFLNDLRNIP- 172 (405)
T ss_dssp HHHHHHHHHHHTTTC-CEEEEESSCCHHHH-HHHHTTTCEEEEECCEETTTTE---------E---CHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCCHhHH-HHHHHcCCeEEEEeccccccCC---------c---CHHHHHHHHHhCC-
Confidence 999999886544346 99999999998643 3344455544444331111110 0 8999999997532
Q ss_pred cEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Cccccc-cC---CCcchhhhhhhc
Q 015230 183 EIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FG---VTPDLTTLGKII 253 (411)
Q Consensus 183 ~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~~~-~~---~~~d~~~~sK~~ 253 (411)
+.+++++++. +|++|... +++.+++|.++|++|++++|+||+|.+| ..+. ...... .. ...-+.||||.|
T Consensus 173 ~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 251 (405)
T 3k7y_A 173 NGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM 251 (405)
T ss_dssp SSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS
T ss_pred CCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccC
Confidence 3457777665 56677654 4566999999999999999999999988 3221 001111 11 112245899999
Q ss_pred c-CCccccccc---ccHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYG---GRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~---~~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~------~~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ +|+|+||++ .++++++.+... .........+.+.++++++.++++. +.+ ++++++++++.+++.+.
T Consensus 252 ~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~ 331 (405)
T 3k7y_A 252 SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNK 331 (405)
T ss_dssp CCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 899999974 366665544210 0000111223456777666666542 111 34455677777777777
Q ss_pred HH----HHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHH
Q 015230 321 II----DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSD 395 (411)
Q Consensus 321 l~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~ 395 (411)
|+ ++.....+.......|+++|+.+.. +.++.|.++||++.|++ |++++ .+++
T Consensus 332 L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~------------------~~~~~L~~~gV~v~p~~----Ris~a~~~~~ 389 (405)
T 3k7y_A 332 LETYQKKYNLNYDWNVYKKQRGLFSFVPLLA------------------KIAEHLKTHHIYIINNG----RINVSGITKN 389 (405)
T ss_dssp HHHHGGGGTCCCCGGGGSSCCSSEEECGGGG------------------GGTTTTTTTTEECCTTS----EEEGGGCCTT
T ss_pred HHhhhhhcCCCCCCccccCCceEEEecCCCH------------------HHHHHHHHCCEeecCCC----eEEEeccCHH
Confidence 76 4421000112234557777764421 22345577799999975 88775 5889
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++++++++|+++++++
T Consensus 390 ~i~~~~~~i~~~~~~~ 405 (405)
T 3k7y_A 390 NVDYIADKICLSLSQI 405 (405)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998763
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=211.53 Aligned_cols=329 Identities=14% Similarity=0.081 Sum_probs=206.7
Q ss_pred EEEeccCCccccccCC-C----cHHHHHHHHHHHHc-C-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEE--eCCh
Q 015230 37 EYIDYVGSWGPAIIGH-A----DDQVLAALGETMKK-G-TSFG---APCLLENVLAEMVISAVP---SIEMVRF--VNSG 101 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~-~----~~~v~~a~~~~l~~-~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~--~~~g 101 (411)
.++||..+ .++.+ . .+.+++++.+.+.. . ..|. +..++++++++++.+.++ .+++|++ |+||
T Consensus 29 ~~i~l~~g---~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~ 105 (401)
T 7aat_A 29 KKMNLGVG---AYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISG 105 (401)
T ss_dssp TCEECCCC---SCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred Cceeeeee---eEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcc
Confidence 36898888 44322 2 34688888777663 1 2222 335778888888877664 3789977 9999
Q ss_pred HHHHHHHHHHHHhc-cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHHH
Q 015230 102 TEACMGVLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFE 178 (411)
Q Consensus 102 ~~a~~~al~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 178 (411)
++|+..+++++..+ .+++.|++.+++|+... ......|..+..++... ..++ |++.+++.++
T Consensus 106 ~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~ 170 (401)
T 7aat_A 106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT-PIFRDAGLQLQAYRYYDPKTCSL--------------DFTGAMEDIS 170 (401)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH-HHHHHTTCEEEEEECEETTTTEE--------------CHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccCCCEEEEcCCCchhHH-HHHHHcCCeeEeeeeeccccCcc--------------CHHHHHHHHH
Confidence 99999998765433 45688999999988643 33444455444433211 1111 7888888887
Q ss_pred cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Ccccccc-CCCcc---hhhhh
Q 015230 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF-GVTPD---LTTLG 250 (411)
Q Consensus 179 ~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~~~~-~~~~d---~~~~s 250 (411)
+...++++++++..+|++|...+ .+.+++|.++|++||+++|+||+|.++ ..+. ......+ +..++ +.|+|
T Consensus 171 ~~~~~~~~v~i~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 249 (401)
T 7aat_A 171 KIPEKSIILLHACAHNPTGVDPR-QEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 249 (401)
T ss_dssp TSCTTCEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred hCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCC
Confidence 65456777777777777776544 455999999999999999999999877 3321 1111111 12222 46899
Q ss_pred hhcc-CCcccccccc---cHH----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-------Hhc-CChHHHHHHHH
Q 015230 251 KIIG-GGLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-------LKE-PGTYEYLNKIT 314 (411)
Q Consensus 251 K~~~-~G~~~g~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-------~~~-~~~~~~~~~~~ 314 (411)
|.++ +|+|+||+++ +++ +.+.+.. .....+.+.+..+++++.++++. ... ++++++++++.
T Consensus 250 K~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 326 (401)
T 7aat_A 250 KNMGLYGERAGAFTVICRDAEEAKRVESQLKI---LIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMR 326 (401)
T ss_dssp TTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEEEeCCHHHHHHHHHHHHH---HHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7999999764 555 3333331 11122334455555555544421 111 45566777777
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CC
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 393 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t 393 (411)
+++.+.|+++.....+.......|+++|+.+. .+.+...+.++||.+.++ +|+++. .+
T Consensus 327 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gi~v~~~----~Ris~~~~~ 385 (401)
T 7aat_A 327 TQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMTKD----GRISVAGVA 385 (401)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCC
T ss_pred HHHHHHHHhcCCCCCCceecCCcceEEecCCC-----------------HHHHHHHHHhCCEeccCC----CeEEeccCC
Confidence 77777776652110122122344666665441 134545557789999875 566543 56
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 394 SDDIQHTITAAEKVL 408 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~ 408 (411)
++++++++++|++++
T Consensus 386 ~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 386 SSNVGYLAHAIHQVT 400 (401)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh
Confidence 677999999999876
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=206.48 Aligned_cols=324 Identities=13% Similarity=0.049 Sum_probs=204.7
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhcc
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 116 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~ 116 (411)
+++|.++ ..++.+|++++++.+++.......+..+.++++++++++.++ ..+++++|+||++|++.+++.+ ..
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~--~~ 88 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA--LR 88 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH--CC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH--hC
Confidence 5777665 344789999999999987643334568889999999999887 6789999999999999999864 33
Q ss_pred CCcEEEEEeCCcCCCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC----CCcEEEEEEcc
Q 015230 117 GRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEP 191 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~~~~~vi~~~ 191 (411)
+++.|++.+++|++.... .....|..+..++.. ...+ |++++++.+++. ..++++|++++
T Consensus 89 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~--------------d~~~l~~~l~~~~~~~~~~~~~v~~~~ 153 (359)
T 1svv_A 89 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKL--------------RVADIESALHENRSEHMVIPKLVYISN 153 (359)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCC--------------CHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCee--------------cHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 567899999999876553 233445444443322 1111 799999999853 12478888877
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC-ccccccC--CCcchh--hhhhhccCCcccccccccH
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFG--VTPDLT--TLGKIIGGGLPVGAYGGRR 266 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~-~~~~~~~--~~~d~~--~~sK~~~~G~~~g~~~~~~ 266 (411)
+ +++|.+.+ .+++++|.++|++||+++|+||+|.+|..|.. ......+ ..+|++ +.+|. ++...+|+++.++
T Consensus 154 ~-~ptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~ 230 (359)
T 1svv_A 154 T-TEVGTQYT-KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND 230 (359)
T ss_dssp S-CTTSCCCC-HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG
T ss_pred C-CCCceecC-HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc
Confidence 6 45777665 57799999999999999999999965511211 1111100 123433 34554 2223356777787
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++.+.... ...+.++..+....++..+. +.+ ++++++++++.+++.+.| +. . ++.......++++++
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L-~~-~--~~~~~~~~~~~~~~~ 302 (359)
T 1svv_A 231 ALKPNARHLI-KQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGL-EA-C--GIRLAWPSASNQLFP 302 (359)
T ss_dssp GGCTTHHHHH-HHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHH-HH-T--TCCBSSCCSSSEECB
T ss_pred cHHHHHHHHH-hcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHh-cc-C--CeEEccCCccceEEE
Confidence 7765554210 00111222232222222222 322 345667777777777777 33 1 222111234556666
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccC---CCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS---QFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~---~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+. .++.+.|.++ ||.+.+. ..+.+|+ ++.++++++++++++|+++++++
T Consensus 303 ~~~------------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 303 ILE------------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp EEE------------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred EcC------------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 552 3678889998 9998432 3345788 46689999999999999987653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=209.77 Aligned_cols=314 Identities=11% Similarity=0.069 Sum_probs=209.0
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCC-EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|++++++.+++.. .+. +..+...++.+++++.++ ..+ ++++|+||++|+..+++.+ ..+++.|++.+++|+
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~ 105 (393)
T 2huf_A 30 APQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL--LEDGDVILIGHTGHW 105 (393)
T ss_dssp CCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH--hCCCCEEEEECCCcc
Confidence 678888888776543 121 123556788888888887 454 8999999999999999864 446678999999998
Q ss_pred CCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.... .....|..+..++.... + ..|++++++.++.. ++++|+++++++++|.+.+ +++
T Consensus 106 ~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 165 (393)
T 2huf_A 106 GDRSADMATRYGADVRVVKSKVG-Q-------------SLSLDEIRDALLIH--KPSVLFLTQGDSSTGVLQG----LEG 165 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred hHHHHHHHHHcCCeeEEEeCCCC-C-------------CCCHHHHHHHHhcc--CCcEEEEEccCCCccccCC----HHH
Confidence 73211 11223444444332211 1 12899999999742 4567777788888899888 899
Q ss_pred HHHHHHHhCCEEEEecccccccccc-CccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCC----Ccc--
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~----~~~-- 279 (411)
|.++|++||+++|+||+|+ + |. ......+ .+|++ ++||+++|+..+|++++++++++.+.... +.+
T Consensus 166 i~~~~~~~~~~li~D~a~~-~--~~~~~~~~~~--~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
T 2huf_A 166 VGALCHQHNCLLIVDTVAS-L--GGAPMFMDRW--EIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWD 240 (393)
T ss_dssp HHHHHHHTTCEEEEECTTT-B--TTBCCCTTTT--TCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-c--CCCCcchhhc--CccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEc
Confidence 9999999999999999996 2 11 1112222 34544 67899774333599999999988876431 111
Q ss_pred --------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceE
Q 015230 280 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMF 341 (411)
Q Consensus 280 --------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~ 341 (411)
.....+.+..+++++.++++.+.+ ++.+++++++.+++.+.|+++ .+....... ..+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~ 318 (393)
T 2huf_A 241 MSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA--GFELYADPKDRLSTVT 318 (393)
T ss_dssp HHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSCGGGBCTTEE
T ss_pred hHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CCeeccCccccCCcEE
Confidence 011124566666666667776543 456778888888888888775 222211100 124577
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec-C--CCHHHHHHHHHHHHHHHHh
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~-~--~t~~~i~~~i~~l~~~~~~ 410 (411)
++.+.. ..+..++.+.|.++ ||.+.++. ...+|+++ . ++++++++++++|++++++
T Consensus 319 ~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 319 TIKVPQ-------------GVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp EEECCT-------------TCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEcCC-------------CCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 776631 11135788888765 99999864 34578876 3 5789999999999998865
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=208.60 Aligned_cols=325 Identities=16% Similarity=0.111 Sum_probs=214.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHH--cCCCCCC---------CCHHHHHHHHHHHhhCC-CCCEEEEeCCh
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--KGTSFGA---------PCLLENVLAEMVISAVP-SIEMVRFVNSG 101 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~--~~~~~~~---------~~~~~~~l~~~l~~~~~-~~~~v~~~~~g 101 (411)
++..|+|+.++ +..+|++++++.+++. ....... ..+...++.+++++.++ .++++++|+||
T Consensus 21 ~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg 94 (423)
T 3lvm_A 21 KLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGA 94 (423)
T ss_dssp CSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSH
T ss_pred CCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCh
Confidence 44567776554 3478999999999887 3211111 13455788888888887 66799999999
Q ss_pred HHHHHHHHHHHHh-cc-CCcEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 102 TEACMGVLRLARA-FT-GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 102 ~~a~~~al~~~~~-~~-~~~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
++|++.+++.+.. +. +++.|++..++|++.......+ .|..+..++......+ |++++++.+
T Consensus 95 t~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i 160 (423)
T 3lvm_A 95 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGII--------------DLKELEAAM 160 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCC--------------CHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCcc--------------CHHHHHHhc
Confidence 9999999985532 23 4788999989998755444332 2443433332221111 899999888
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~ 255 (411)
+ +++++|+++++++++|.+.+ +++|.++|++||++||+||+|+. +.. ..+.....+|++ ++||.+++
T Consensus 161 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~---~~~-~~~~~~~~~di~~~s~sK~~g~ 229 (423)
T 3lvm_A 161 R---DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV---GKL-PIDLSQLKVDLMSFSGHKIYGP 229 (423)
T ss_dssp C---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT---TTS-CCCTTTSCCSEEEEESTTTTSC
T ss_pred C---CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc---CCC-CcChhhcCCCEEEechHHhcCC
Confidence 6 36889999999999999988 99999999999999999999972 211 111222345655 56796653
Q ss_pred CcccccccccHHHHHHhcCCCCc----ccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
..+|+++++++..+.+.+.... ....+.+.++.+++++.++++.+.. ++++++++++.+++++.|+++ +
T Consensus 230 -~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 304 (423)
T 3lvm_A 230 -KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI----E 304 (423)
T ss_dssp -SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T
T ss_pred -CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Confidence 2389998887766555432110 0122445677777777777776654 555666666666666666543 3
Q ss_pred CceEEeee----cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------------------
Q 015230 330 HAICGGYI----SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------- 383 (411)
Q Consensus 330 ~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------- 383 (411)
........ +.++.+.+... +...+.+.|.+ |.+.++..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 368 (423)
T 3lvm_A 305 EVYLNGDLEHGAPNILNVSFNYV--------------EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELA 368 (423)
T ss_dssp TEEEESCSTTBCTTEEEEEETTS--------------CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHH
T ss_pred CEEEeCCccccCCCeEEEEeCCC--------------CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcccc
Confidence 32222222 35666665211 12567777766 88877632
Q ss_pred -cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 384 -EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 -~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++ ..+|++++++++++|++++++
T Consensus 369 ~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 369 HSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 446775 456999999999999998865
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=213.50 Aligned_cols=335 Identities=12% Similarity=0.059 Sum_probs=210.2
Q ss_pred CcHHHHHHHHHHHHcC---C--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEE
Q 015230 53 ADDQVLAALGETMKKG---T--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERI 121 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~---~--~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~v 121 (411)
.++++++++.+.+... . .|. +..++++++++++.+..+ .+++|++|+|+++++..+++.. ...+++.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL-IRNEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH-CCSTTEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH-cCCCCCEE
Confidence 4556777777777763 1 122 235778888888877654 5789999999999999999853 11356789
Q ss_pred EEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCc
Q 015230 122 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 122 i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~ 198 (411)
++..++|+.... .....|..+..++.....++ ..|++++++.++.. ..++++|+++..+|++|.
T Consensus 186 lv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~ 252 (500)
T 3tcm_A 186 LVPIPQYPLYSA-SIALHGGALVPYYLNESTGW------------GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252 (500)
T ss_dssp EEEESCCTHHHH-HHHHTTCEEEEEECBTTTTS------------BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred EEeCCCcHhHHH-HHHHcCCEEEEEecccccCC------------CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence 999999885443 34444554444333222111 11899999998852 124555555444556665
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCccc----cccCC---Ccc---hhhhhhhc-c-CCccccccc
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQ----EYFGV---TPD---LTTLGKII-G-GGLPVGAYG 263 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~----~~~~~---~~d---~~~~sK~~-~-~G~~~g~~~ 263 (411)
+.+ .+.+++|.++|++||+++|+||+|.++ ..+ ....+ ..++. .++ +.|+||+| + +|+|+||++
T Consensus 253 ~~s-~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 331 (500)
T 3tcm_A 253 VLA-EENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFE 331 (500)
T ss_dssp CCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEE
T ss_pred cCC-HHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEE
Confidence 544 445999999999999999999999876 322 11111 11211 111 23899999 5 699999997
Q ss_pred c---cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHH-----------HHhc-CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 264 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 264 ~---~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+ ++++++.+... .....+.++++++++..+++ .... ++++++++++.+++.+.|+++ .
T Consensus 332 ~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---~ 404 (500)
T 3tcm_A 332 ITGFSAPVREQIYKI----ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL---E 404 (500)
T ss_dssp EESCCTTHHHHHHHH----HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---T
T ss_pred EeCCCHHHHHHHHHH----HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 6 88888877631 12356678888887777664 1122 455566777777777777654 1
Q ss_pred CCceEEeeecceEEEEEecCCCCCcch-hcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecCCCHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFED-AKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~~t~~~i~~~ 400 (411)
++.......|+++|+.+..+.. .+.. ...+...+...+.+.|.++||++.|+.. ..+|+++..++++++++
T Consensus 405 g~~~~~~~g~~~~~~~~~lp~~-~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~ 483 (500)
T 3tcm_A 405 GITCNEAEGAMYVFPQICLPQK-AIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAV 483 (500)
T ss_dssp TEECCCCCBTTEECCEECCCHH-HHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHH
T ss_pred CcEEecCCeEEEEeeeecCchh-hHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHH
Confidence 2222223456677755531100 0000 0000011222244667778999998732 24799888999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|.+++++
T Consensus 484 i~~l~~~~~~ 493 (500)
T 3tcm_A 484 ISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=206.91 Aligned_cols=309 Identities=17% Similarity=0.090 Sum_probs=206.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
.+|++++++.+++... .+....+...++.+++++.++ .++++++|+||++|+..+++.+ ..+++.|++.+++|++.
T Consensus 12 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~ 88 (352)
T 1iug_A 12 LHPKALEALARPQLHH-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFSE 88 (352)
T ss_dssp CCHHHHHHHHSCCCCT-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHHH
T ss_pred CCHHHHHHhccCCCCc-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc--cCCCCeEEEEeCCchhH
Confidence 6788999988776531 111112345788888888887 4579999999999999999864 34567899999999875
Q ss_pred ch-hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHH
Q 015230 132 AD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 210 (411)
Q Consensus 132 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~ 210 (411)
.. ......|..+..++......+ |++++++ +++++|+++++++++|.+.+ +++|.
T Consensus 89 ~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i~ 144 (352)
T 1iug_A 89 RFYEIALEAGLVVERLDYPYGDTP--------------RPEDVAK------EGYAGLLLVHSETSTGALAD----LPALA 144 (352)
T ss_dssp HHHHHHHHTTCEEEEEECCTTCCC--------------CTTTSCC------SSCSEEEEESEETTTTEECC----HHHHH
T ss_pred HHHHHHHHcCCceEEEeCCCCCCC--------------CHHHHhc------cCCcEEEEEEecCCcceecC----HHHHH
Confidence 41 111223444444333211111 4555544 24667888888888899888 99999
Q ss_pred HHHHHh--CCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC-------------
Q 015230 211 RITKEN--GALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP------------- 274 (411)
Q Consensus 211 ~l~~~~--~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~------------- 274 (411)
++|++| |+++|+||+|+ + |. .+....++.+.-+.++||++.++.++|++++++++++.+..
T Consensus 145 ~l~~~~~~~~~li~D~a~~-~--~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
T 1iug_A 145 RAFKEKNPEGLVGADMVTS-L--LVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKA 221 (352)
T ss_dssp HHHHHHCTTCEEEEECTTT-B--TTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHH
T ss_pred HHHHhhCCCCEEEEECCcc-c--cCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhh
Confidence 999999 99999999996 2 11 11122223222234678988764458999888887755221
Q ss_pred CCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCC
Q 015230 275 AGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVY 351 (411)
Q Consensus 275 ~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 351 (411)
... .....+.+..+++++.++++.+++ ++++++++++.+++.+.|+++ ++..... ..+.++++.+..
T Consensus 222 ~~~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~---- 291 (352)
T 1iug_A 222 QKE--GESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLRPVPKRFSPAVAAFYLPE---- 291 (352)
T ss_dssp HTT--TCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSBCTTCEEEECCT----
T ss_pred ccc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccccccCCeEEEEEcCC----
Confidence 000 112446677888888888887654 356677777777777777764 2221111 257788887742
Q ss_pred CcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 352 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
..+..++.+.|.++||.+.++. .+.+|+++. +|++++++++++|++++++
T Consensus 292 ---------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 292 ---------GVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp ---------TCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 1113678899999999999874 345788654 5899999999999998875
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-25 Score=207.56 Aligned_cols=325 Identities=12% Similarity=0.058 Sum_probs=210.2
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCCCC-----CCH---HHHH-HHHHHHhhCCCCCEEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFGA-----PCL---LENV-LAEMVISAVPSIEMVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~~~-----~~~---~~~~-l~~~l~~~~~~~~~v~~~~~g~~a 104 (411)
++++|+.++. +++ +|++++++.+++++ . ..+.. ... ..++ ..+++++.++.....+++++|++|
T Consensus 23 ~~~i~~~~~~--~~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASE--NFV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTC--CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCC--CCC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 4578888875 443 89999999999875 1 12211 111 2232 235777777633333555668889
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCc--hhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHA--DPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
+..+++.+ ..+++.|++..++|++.. ..+....|..+...+.+.. ... ..|++++++.++..
T Consensus 98 ~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~- 162 (407)
T 2dkj_A 98 NMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTE------------LIDLEEVRRLALEH- 162 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTS------------SCCHHHHHHHHHHH-
T ss_pred HHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccC------------ccCHHHHHHHHhhc-
Confidence 99999865 456788999999998763 2222223321111111100 000 12899999998742
Q ss_pred CcEEEEEE-cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc-c-ccccCccccccCCCcchh--hhhhhccCC
Q 015230 182 GEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLGKIIGGG 256 (411)
Q Consensus 182 ~~~~~vi~-~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g-~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G 256 (411)
++++|++ +|+++ ...+ +++|.++|++||+++|+||+|++ + ..+.... ..+ .+|++ |+||+++ |
T Consensus 163 -~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g 230 (407)
T 2dkj_A 163 -RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-G 230 (407)
T ss_dssp -CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-C
T ss_pred -CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-C
Confidence 3556666 56553 4455 99999999999999999999984 6 4443211 111 24655 8999887 5
Q ss_pred ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 257 LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 257 ~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+|+|+++++ +++++.+..... .+.+.+.++..++++.++++.+.. ++++++++++.+++.+.|+++ ++..
T Consensus 231 ~~~G~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~ 304 (407)
T 2dkj_A 231 PRGGLILSNDPELGKRIDKLIF--PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR----GYRI 304 (407)
T ss_dssp CSCEEEEESCHHHHHHHHHHHT--TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEE
T ss_pred CCceEEEECCHHHHHHHHhhhc--ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC----Ccee
Confidence 678999988 788877753211 222345566666677777776543 567778888888888888775 2211
Q ss_pred EE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------Ccceeeec------CCCHH
Q 015230 333 CG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL------AHSSD 395 (411)
Q Consensus 333 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~~~------~~t~~ 395 (411)
.. +..|.++++.+.... .+...+.+.|.++||.+.++. ...+|+++ .+|++
T Consensus 305 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~ 372 (407)
T 2dkj_A 305 VTGGTDNHLFLVDLRPKG------------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPE 372 (407)
T ss_dssp GGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGG
T ss_pred ecCCCCceEEEEECcccC------------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHH
Confidence 11 245788888874311 123678888999999998763 23477765 37999
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|++++++
T Consensus 373 ~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 373 EMPLVAELIDRALLE 387 (407)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=203.05 Aligned_cols=321 Identities=15% Similarity=0.120 Sum_probs=210.3
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CC-----CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 108 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~a 108 (411)
|+|+.++ +..+|++++++.+.+....... +. .+...++.+++++.++ .++++++|+||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 5665554 3579999999999998632111 21 2456788888888887 567999999999999999
Q ss_pred HHHHHh--ccCCcEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 109 LRLARA--FTGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 109 l~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++.+.. ..+++.|++.+++|++.......+ .|..+..++... .+. .|++++++.++ +++
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i~---~~~ 139 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGE-------------VDVSFIDQKLR---DDT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TSC-------------BCHHHHHHHCC---TTE
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CCc-------------cCHHHHHHHhc---CCC
Confidence 986531 145678999999988654444332 243333333221 111 18999998886 357
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCccccccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 263 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~ 263 (411)
++|+++++++++|.+.+ +++|.++|++||++ |+||+|+ + |. ......++.+.-+.++||.++. ..+|+++
T Consensus 140 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~--g~~~~~~~~~~~di~~~s~sK~~g~-~g~G~~~ 210 (382)
T 4eb5_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-V--GQIEVDVEKIGADMLTISSNDIYGP-KGVGALW 210 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-B--TTBCCCHHHHTCSEEEEETGGGTCC-SSCEEEE
T ss_pred eEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-c--CCcccCccccCCCEEEeehHHhcCC-CceEEEE
Confidence 88889888889999888 99999999999999 9999997 2 11 1112222322223478998652 1278888
Q ss_pred ccHHHHHHhcCCCCc----ccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-
Q 015230 264 GRRDIMEMVAPAGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY- 336 (411)
Q Consensus 264 ~~~~~~~~~~~~~~~----~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 336 (411)
++++. .+.+.... ......+.+..+++++.++++.+.+ ++++++++++.+++.+.|+++ +.......
T Consensus 211 ~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~ 284 (382)
T 4eb5_A 211 IRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNGHP 284 (382)
T ss_dssp EETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECSCS
T ss_pred Ecccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CCeEEeCCc
Confidence 77653 12211000 1112345566677776777776544 455666667777777766653 22211111
Q ss_pred ---ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------------Ccceeeec
Q 015230 337 ---ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTSL 390 (411)
Q Consensus 337 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~~~~ 390 (411)
.+.++++.+.. .+..++.+.|.++||.+.++. .+.+|+++
T Consensus 285 ~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~ 350 (382)
T 4eb5_A 285 EKRLPNNVNVRFSY--------------IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTL 350 (382)
T ss_dssp SSBCTTEEEEEETT--------------SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEEC
T ss_pred ccCCCCEEEEEeCC--------------cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEEC
Confidence 25577776631 112578888999999998864 24578865
Q ss_pred C--CCHHHHHHHHHHHHHHHHh
Q 015230 391 A--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~--~t~~~i~~~i~~l~~~~~~ 410 (411)
. +|++++++++++|++++++
T Consensus 351 ~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 351 GRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5 6999999999999998765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=201.55 Aligned_cols=313 Identities=15% Similarity=0.096 Sum_probs=207.1
Q ss_pred CCcHHHHHHHHHHHHcCCCCC---C-----CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh--ccCCcE
Q 015230 52 HADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--FTGRER 120 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~---~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~--~~~~~~ 120 (411)
..+|.+++++.+.+.....+. + ..+..+++.+++++.++ .++++++|+|+++|+..+++.+.. ..+++.
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~ 90 (382)
T 4hvk_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKH 90 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCE
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCE
Confidence 368999999999998732211 1 13445688999999987 677899999999999999985421 146778
Q ss_pred EEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 121 IIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 121 vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
|++.++.|++.......+ .|..+..++......+ |++++++.++ +++++|+++++++++|.
T Consensus 91 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~---~~~~~v~~~~~~nptG~ 153 (382)
T 4hvk_A 91 ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV--------------DVSFIDQKLR---DDTILVSVQHANNEIGT 153 (382)
T ss_dssp EEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCB--------------CHHHHHHHCC---TTEEEEECCSBCTTTCB
T ss_pred EEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCc--------------CHHHHHHHhc---cCceEEEEECCCCCcee
Confidence 888888888655544333 2443333332211111 8999998886 46789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCC
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 277 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~ 277 (411)
+.+ +++|.++|++||+ +|+||+|+ .+. ....+.++.+.-+.+++|.+++ ..+|+++++++. .+.+...
T Consensus 154 ~~~----~~~i~~l~~~~~~-li~D~a~~---~~~~~~~~~~~~~d~~~~s~~K~~g~-~g~g~~~~~~~~--~~~~~~~ 222 (382)
T 4hvk_A 154 IQP----VEEISEVLAGKAA-LHIDATAS---VGQIEVDVEKIGADMLTISSNDIYGP-KGVGALWIRKEA--KLQPVIL 222 (382)
T ss_dssp BCC----HHHHHHHHSSSSE-EEEECTTT---BTTBCCCHHHHTCSEEEEESGGGTSC-TTCEEEEEETTC--CCCCSSC
T ss_pred eCC----HHHHHHHHHHcCE-EEEEhHHh---cCCCCCCchhcCCCEEEEeHHHhcCC-CceEEEEEcCcc--CcCcccc
Confidence 988 9999999999999 99999996 121 1122223333334578897652 237888776553 2221100
Q ss_pred ----cccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee----ecceEEEEEec
Q 015230 278 ----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY----ISGMFGFFFTE 347 (411)
Q Consensus 278 ----~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~ 347 (411)
.......+.++.++++..++++.+.+ ++.+++.+++.+++.+.|+++ +....... .+.++.+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T 4hvk_A 223 GGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNGHPEKRLPNNVNVRFSY 298 (382)
T ss_dssp SSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECSCSSSBCTTEEEEEETT
T ss_pred cCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCccccCCCEEEEEECC
Confidence 01112445577777777777775543 556667777777777776643 32211111 13456665532
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------------Ccceeeec--CCCHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTSL--AHSSDDIQHTIT 402 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~~~~--~~t~~~i~~~i~ 402 (411)
. +...+.+.|.++||.+.++. .+.+|+++ .+|+++++++++
T Consensus 299 ~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~ 364 (382)
T 4hvk_A 299 I--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp C--------------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred C--------------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 1 13678899999999999863 34578754 468999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|++++++
T Consensus 365 ~l~~~~~~ 372 (382)
T 4hvk_A 365 VLPGVIER 372 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=199.37 Aligned_cols=321 Identities=16% Similarity=0.079 Sum_probs=198.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
..++||.++ + .++.+|++++++.+++..........+..+++++++++.++..+++++|+||++|+..+++++ .
T Consensus 7 ~~~id~~~~---~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~--~ 80 (356)
T 1v72_A 7 PPALGFSSD---N-IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM--T 80 (356)
T ss_dssp CCCCBCSCG---G-GCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS--C
T ss_pred CceEeeccC---C-ccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHh--c
Confidence 457898876 3 356899999999888643111122467789999999998874345999999999999999853 2
Q ss_pred cCCcEEEEEeCCcCCCchh-hhhhc--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH-HHHcC----CCcEEEE
Q 015230 116 TGRERIIKFEGCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENN----KGEIAAI 187 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~-~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~----~~~~~~v 187 (411)
.+++.|++.+++|.+.... ..... |..+..++.. .+. -|++++++ .++.. ..++++|
T Consensus 81 ~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~-------------~d~~~l~~~~i~~~~~~~~~~~~~v 145 (356)
T 1v72_A 81 PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAK-------------LDIVRLRERTREKVGDVHTTQPACV 145 (356)
T ss_dssp CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGC-------------CCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred CCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCe-------------EcHHHHHHHhhhcchhhccCCceEE
Confidence 3445666655554433322 13333 5444333221 110 18999998 88641 1267888
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--cccCccccccC--CCcch--hhhhhhccCCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFG--VTPDL--TTLGKIIGGGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~~~~~~~~~--~~~d~--~~~sK~~~~G~~~g 260 (411)
++++++ ++|.+ ++.+.+++|.++|++||++||+||+|..+ . .+... ...+ ...|+ .++||+ |.|+|
T Consensus 146 ~~~~~~-~tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~---g~~~G 218 (356)
T 1v72_A 146 SITQAT-EVGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP--AEMTWKAGVDALSFGATKN---GVLAA 218 (356)
T ss_dssp EEESSC-TTSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT--TTTTGGGTCCEEEECCGGG---TCSSC
T ss_pred EEEcCC-CCCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH--HHhhhhhcCCEEEEecccC---CCcCc
Confidence 888865 47764 45677999999999999999999999743 1 22111 1111 12333 468898 33777
Q ss_pred --cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHhcCCceE-E
Q 015230 261 --AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAIC-G 334 (411)
Q Consensus 261 --~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 334 (411)
++++++++++.+..... ..++.... +..++.++++.+.++ ++.++.+++.+++++.|+++ +.... .
T Consensus 219 ~g~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~ 290 (356)
T 1v72_A 219 EAIVLFNTSLATEMSYRRK--RAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----GGVEVLG 290 (356)
T ss_dssp EEEEESSGGGHHHHHHHHH--HTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----TTEEEES
T ss_pred cEEEEECHHHHhhHHHHhh--ccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----CCcEEcc
Confidence 77778887776542100 11121111 112223344444332 23455566666666666542 22211 1
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...+.++|+.+. .++.+.|.++||.+.++. .+.+|++ +.+|++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 291 GTEANILFCRLD------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCCSSEEEEEEC------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CCCccEEEEEcC------------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 234667777662 368888999999999764 3457874 567999999999999987654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=201.42 Aligned_cols=330 Identities=17% Similarity=0.125 Sum_probs=207.6
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
++++||.++. +.. .++++++++.+.... ....++.....++.+++++.+ +.+++++++||++|+..+++.. .
T Consensus 3 ~~~i~~~~~~---~~~-p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~~~~~~--~ 74 (347)
T 1jg8_A 3 HMMIDLRSDT---VTK-PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--T 74 (347)
T ss_dssp --CEECSCGG---GCC-CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--C
T ss_pred ceEEEecccc---CCC-CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCceEEEecCcHHHHHHHHHHh--c
Confidence 4678999884 333 678888888655322 111234556677888888877 4568899999999999888743 3
Q ss_pred cCCcEEEEEeCCcCCCchh--hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEc
Q 015230 116 TGRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILE 190 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~ 190 (411)
.+++.|++.+++|...+.. .....|..+..+ .. ..+. -|+++++++++.. ..++++|+++
T Consensus 75 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~~-------------~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 75 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNGA-------------MDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETTE-------------ECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCCc-------------cCHHHHHHHhccccccccCceEEEEe
Confidence 4567888888877543321 223334433322 11 0110 1899999988742 1257888888
Q ss_pred ccCCCC-CccCCCHHHHHHHHHHHHHhCCEEEEeccccc--c-ccccCccccc-cCCCcchhhhhhhccCCccccc-ccc
Q 015230 191 PVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEY-FGVTPDLTTLGKIIGGGLPVGA-YGG 264 (411)
Q Consensus 191 ~~~~~~-G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g--~-~~g~~~~~~~-~~~~~d~~~~sK~~~~G~~~g~-~~~ 264 (411)
+++|++ |.+.+ .+.+++|.++|++||+++|+||+|.- + ..+.. .... .+.+.-++++||++++ ++|+ ++.
T Consensus 140 ~~~npt~G~~~~-~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~sK~l~~--~~G~~~~~ 215 (347)
T 1jg8_A 140 NTHNRSGGRVVP-LENIKEICTIAKEHGINVHIDGARIFNASIASGVP-VKEYAGYADSVMFCLSKGLCA--PVGSVVVG 215 (347)
T ss_dssp SSBTTTTSBCCC-HHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC-HHHHHHTCSEEEEESSSTTCC--SSCEEEEE
T ss_pred ccccccCCccCc-HHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCC-hHHhcccccEEEEecccccCC--CceEEEEc
Confidence 877776 66554 55599999999999999999999841 1 11111 0000 1122124579999985 5785 567
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 344 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~ 344 (411)
++++++.+...... .+.+...+.+.++++..+++... +. .++..++.+++.+.|+++. ..... ....+.++++.
T Consensus 216 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~~--~~~~~-~~~~~~~~~~~ 289 (347)
T 1jg8_A 216 DRDFIERARKARKM-LGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEIG--YSVNP-EDVKTNMVILR 289 (347)
T ss_dssp CHHHHHHHHHHHHH-HTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHHT--CBCCG-GGCCSSEEEEE
T ss_pred CHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcC--ceecc-CCCcceEEEEE
Confidence 88777665421111 22344455666666666666432 33 3445567788888887761 22111 12346778887
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+... ..+..++.+.|.++||.+.+++...+|++ ..++++++++++++|++++++
T Consensus 290 ~~~~------------~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 290 TDNL------------KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp CTTS------------SSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cccc------------cCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 7321 11236788999999999998765678885 556999999999999998765
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=203.54 Aligned_cols=331 Identities=15% Similarity=0.117 Sum_probs=214.8
Q ss_pred EEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHH
Q 015230 30 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 30 ~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al 109 (411)
++|.+++.+.++...++..+.+|..++..+.+ +++++++++.++..+.++||+||++|+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-----------------~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~ 68 (379)
T 3ke3_A 6 RQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-----------------NDLLSNLKTVYNAEAAVIIPGSGTYGMEAVA 68 (379)
T ss_dssp --CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-----------------HHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-----------------HHHHHHHHHHhCCCCEEEEcCChhHHHHHHH
Confidence 45677777777776555455666666554322 3444555566653478899999999999988
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhh-hcCC--CCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLV-KAGS--GVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~g~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+. +.++++||+.+++||+....... ..|. .+..++.+.. .... .+ +...|++++++.++.. ++
T Consensus 69 ~~---~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~----~~---~~~~d~~~l~~~i~~~--~~ 136 (379)
T 3ke3_A 69 RQ---LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAP----KP---FAPVDIETAVAKIKED--KS 136 (379)
T ss_dssp HH---HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSC----CC---EECCCHHHHHHHHHHH--TC
T ss_pred Hh---CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccccccc----CC---CCCCCHHHHHHHHhhc--CC
Confidence 63 45778999999999975433222 2232 2222222110 0000 00 0123899999999632 45
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 264 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~ 264 (411)
++|++..+++++|.+.+ .+++++|.++|++||+++|+|++++| +..+..+.++++..+.+++|+++++..+|++++
T Consensus 137 ~~v~~~~~~~~~G~~~~-~~~l~~i~~~~~~~~~~li~D~~~~g---~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~ 212 (379)
T 3ke3_A 137 AIVYAPHVETSSGIILS-EEYIKALSEAVHSVGGLLVIDCIASG---CVWLDMKELGIDVLISAPQKGWSSTPCAGLVML 212 (379)
T ss_dssp SEEEEESEETTTTEECC-HHHHHHHHHHHHHTTCEEEEECTTCT---TCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEE
T ss_pred cEEEEEeecCCCceeCC-HHHHHHHHHHHHHcCCEEEEEecccC---CccccccccCCCEEEecchhhcCCCCceEEEEE
Confidence 67778777777887665 66799999999999999999999972 334445556776777788999987556899999
Q ss_pred cHHHHHHhcCCC--Cccc--------------c---cCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH
Q 015230 265 RRDIMEMVAPAG--PMYQ--------------A---GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 322 (411)
Q Consensus 265 ~~~~~~~~~~~~--~~~~--------------~---~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~ 322 (411)
++++++.+.+.. ..+. + .+++.++.++++..++++.+.+ +++.++.+++.+++++.|+
T Consensus 213 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~ 292 (379)
T 3ke3_A 213 SAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLT 292 (379)
T ss_dssp CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 999988876421 1111 0 1237788888888888887765 4666777888888888887
Q ss_pred HHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---------Ccceeee--c
Q 015230 323 DAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS--L 390 (411)
Q Consensus 323 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------~~~~~~~--~ 390 (411)
++.. ....... ..+.+..+... . .. ....+.|.++||.+.++. ...+|++ .
T Consensus 293 ~~g~--~~~~~~~~~~~~i~~~~~~-------------~-~~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~ 355 (379)
T 3ke3_A 293 DKGI--ESVAAEGFEAPGVVVSYTE-------------R-DD-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFG 355 (379)
T ss_dssp HTTC--CBSBCTTCBCSSEEEEECS-------------C-HH-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCS
T ss_pred HcCC--EecCCccccCceEEEEccC-------------C-cc-hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCc
Confidence 7621 1111100 11222222221 1 11 123677889999998874 3457774 4
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|++||++++++|++++++
T Consensus 356 ~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 356 LDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999998875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=208.63 Aligned_cols=332 Identities=9% Similarity=0.004 Sum_probs=205.5
Q ss_pred cHHHHHHHHHHHHcCC-----CC---CCCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHHHHHHHHHHhccCC---
Q 015230 54 DDQVLAALGETMKKGT-----SF---GAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGR--- 118 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~-----~~---~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~~~al~~~~~~~~~--- 118 (411)
+.++.+++.++++... .| .+..++++++++++.+..+ .+++|++|+|+++++..++++. ..++
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l--~~~gd~~ 180 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL--VSGGGKS 180 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH--CCCCGGG
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH--cCCCCCC
Confidence 4455566677776521 12 2335788999999988763 5789999999999999999853 2222
Q ss_pred -cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC--cEEEEEEcccCCC
Q 015230 119 -ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVVGN 195 (411)
Q Consensus 119 -~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~--~~~~vi~~~~~~~ 195 (411)
+.|++..+.|+... ......|..+..++.....++. -|++++++.++.... ++++++++..+|+
T Consensus 181 ~d~Vlv~~p~y~~~~-~~~~~~g~~~v~~~~~~~~~~~------------~d~~~le~~l~~~~~~~~~k~i~l~np~NP 247 (498)
T 3ihj_A 181 RTGVMIPIPQYPLYS-AVISELDAIQVNYYLDEENCWA------------LNVNELRRAVQEAKDHCDPKVLCIINPGNP 247 (498)
T ss_dssp SEEEEEEESCCTHHH-HHHHHTTCEEEEEECBGGGTTB------------CCHHHHHHHHHHHTTTSEEEEEEEESSCTT
T ss_pred CCEEEEeCCCchhHH-HHHHHcCCEEEEeeccccccCC------------CCHHHHHHHHHhhhccCCCeEEEEECCCCC
Confidence 48888888888543 3344445433333221111110 089999999985321 3666665555556
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCcccccc--CC------C---cchhhhhhhc-c-CCccc
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF--GV------T---PDLTTLGKII-G-GGLPV 259 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~~~~--~~------~---~d~~~~sK~~-~-~G~~~ 259 (411)
+|.+.+ .+.+++|.++|++|+++||+||+|..+ ..+ ....+... +. . .-+.||||.+ + +|+|+
T Consensus 248 TG~v~s-~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~ 326 (498)
T 3ihj_A 248 TGQVQS-RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG 326 (498)
T ss_dssp TCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC
T ss_pred CCCcCC-HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce
Confidence 666554 444999999999999999999999876 332 11111110 00 1 1234899999 5 79999
Q ss_pred cccc---ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHH-----------HHhc-CChHHHHHHHHHHHHHHHHHH
Q 015230 260 GAYG---GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 260 g~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~ 324 (411)
||++ .++++++.+... .......+.++++++.++++ .+.. ++++++++++.+++.+.|+++
T Consensus 327 G~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 402 (498)
T 3ihj_A 327 GYMEVINLHPEIKGQLVKL----LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV 402 (498)
T ss_dssp EEEEEESCCHHHHHHHHHH----HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEEecCCHHHHHHHHHH----HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9997 688888887631 22345667777777666553 1111 344566667777777777654
Q ss_pred HHhcCCce-EEeeecceEEEEEecCCCCCcchh-cccchHHHHHHHHHHHHcCeEeccCC-------CcceeeecCCCHH
Q 015230 325 GKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDA-KKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSD 395 (411)
Q Consensus 325 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~~~~t~~ 395 (411)
+... .....|+++|+.+..+.. .+... ..+...+...+.+.|.++||.+.|+. ...+|+++..+++
T Consensus 403 ----~g~~~~~p~gg~~~~~~l~~p~~-~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e 477 (498)
T 3ihj_A 403 ----PGIHCNPLQGAMYAFPRIFIPAK-AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVE 477 (498)
T ss_dssp ----TTEECCCCCBSSEECCEECCCHH-HHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHH
T ss_pred ----CCcEecCCCeEEEEEEeccCchh-hhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHH
Confidence 3222 223456677766632100 00000 00001111124566778899998863 2358998889999
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|.+++++
T Consensus 478 ~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 478 KLKTVLQKVKDFHIN 492 (498)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=209.05 Aligned_cols=352 Identities=13% Similarity=0.029 Sum_probs=205.2
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.|+.|+||.++.++ +.+++++.+.+..+....+......++.+++++.+ +.++++||+||++|++.++++++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~ggt~A~~~al~~~~ 112 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 112 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHc-CCCcEEEcCCcHHHHHHHHHHHH
Confidence 46789999877432 67888888887764322223455677777887777 45899999999999999998764
Q ss_pred hcc--CCcE---EEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC-CCCHHHHHHHHHcCC-CcEEE
Q 015230 114 AFT--GRER---IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENNK-GEIAA 186 (411)
Q Consensus 114 ~~~--~~~~---vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~-~~~~~ 186 (411)
.+. .++. ||+. ..+++.+.......|..+....... .+.. ....... ..|+++++++++... +++++
T Consensus 113 ~~~~~~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~d~~~le~~i~~~~~~~~~~ 186 (467)
T 1ax4_A 113 KYKQKEGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEK--AFDS---ETYDDWKGDFDIKKLKENIAQHGADNIVA 186 (467)
T ss_dssp HHHHHTTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGG--GGCT---TSCCTTTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred HhhccCCCccceEEEe-ccccchhhHHHhccCCceecccccc--cccc---cccCCcccccCHHHHHHHHHhcCCCCeeE
Confidence 420 3344 6665 3333433444444454333221110 0000 0000000 118999999998532 36899
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc--cc---c---ccC-ccccccC----CCcch--hhhhh
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--FR---L---AYG-GAQEYFG----VTPDL--TTLGK 251 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g--~~---~---g~~-~~~~~~~----~~~d~--~~~sK 251 (411)
|++++++|++|...++.+++++|+++|++||++||+||++.. .. . +.. .....++ ..+|+ .++||
T Consensus 187 vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK 266 (467)
T 1ax4_A 187 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 266 (467)
T ss_dssp EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred EEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccc
Confidence 999998888755666778899999999999999999998752 10 0 100 0000000 11343 36788
Q ss_pred hccCCccccc-cccc-H-HHHHHhcCCCCcc-cccCCCCCHHHHHH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 015230 252 IIGGGLPVGA-YGGR-R-DIMEMVAPAGPMY-QAGTLSGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 252 ~~~~G~~~g~-~~~~-~-~~~~~~~~~~~~~-~~~t~~~~~~~~a~-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
+++ +|+|+ ++++ + ++++.+......+ ...+++..+..+.+ ...+++...+++..++..++.+++.+.|++.
T Consensus 267 ~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-- 342 (467)
T 1ax4_A 267 DPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-- 342 (467)
T ss_dssp TTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhC--
Confidence 775 46654 4556 5 7766654211111 11233333333322 2234554333234555567777888888762
Q ss_pred hcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEecc-CC----------------Ccceee
Q 015230 327 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAP-SQ----------------FEAGFT 388 (411)
Q Consensus 327 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~-~~----------------~~~~~~ 388 (411)
.++.. ....|.++|+.+... ...+. ....+..++.+.| .++||.+.+ +. .+.+|+
T Consensus 343 ~~~~~--~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRl 415 (467)
T 1ax4_A 343 GIPIQ--YPTGGHAVFVDCKKL-VPQIP----GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL 415 (467)
T ss_dssp TCCBC--SSCCSSEEEEESTTT-CTTSC----GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred CCCcc--cCCCceEEEEehhhh-ccccc----cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEE
Confidence 22222 233477788773110 00000 0112346788888 888999987 21 145677
Q ss_pred ec---CCCHHHHHHHHHHHHHHHHh
Q 015230 389 SL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 ~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
++ .+|++++++++++|++++++
T Consensus 416 s~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 416 TIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp ECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ecccccCCHHHHHHHHHHHHHHHHh
Confidence 54 38999999999999987754
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=202.78 Aligned_cols=314 Identities=13% Similarity=0.121 Sum_probs=210.5
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCC-EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.++++++++.+.+.. .+. ++.....++.+.+++.++ ..+ ++++|+||++|+..+++.+ ..+++.|++.+++|+
T Consensus 29 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~vl~~~~~~~ 104 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 104 (396)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh--cCCCCeEEEEcCCcc
Confidence 567787777655432 121 112446788888888887 556 8999999999999999864 456688999999999
Q ss_pred CCch-hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+... ......|..+..++... .+ ..|++++++.++.. ++++|+++++++++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~ 164 (396)
T 2ch1_A 105 AERAVEMSERYGADVRTIEGPP-DR-------------PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 164 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TS-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cHHHHHHHHHcCCceEEecCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHH
Confidence 7421 13334455444433321 11 11899999999742 4567777777788898888 899
Q ss_pred HHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCC----Ccc--
Q 015230 209 IRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~----~~~-- 279 (411)
|.++|++||+++|+||+|+ + | ....... ..+|++ +++|+++++.++|++++++++++.+...+ ..+
T Consensus 165 i~~l~~~~~~~li~Dea~~-~--g~~~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVAS-L--CGVPFYMDK--WEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 239 (396)
T ss_dssp HHHHHHHTTCEEEEECTTT-B--TTBCCCTTT--TTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-c--cCCccchhh--cCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence 9999999999999999997 3 1 1111122 235654 56699887656799988988888764321 000
Q ss_pred --------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe--eecce
Q 015230 280 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGM 340 (411)
Q Consensus 280 --------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~ 340 (411)
.....+.+..+++++.++++.+.+ ++++++++++.+++.+.|+++. ........ ..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~ 317 (396)
T 2ch1_A 240 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG--LDIFVKDPRHRLPTV 317 (396)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--CCBSSCSGGGBCTTE
T ss_pred hHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC--CeeccCCccccCCce
Confidence 112345677788888888876533 4667788888888888888762 22211100 12346
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++.+.. ..+..++.+.|.++ ||.+.++. .+.+|+++ .++++++++++++|++++++
T Consensus 318 ~~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 318 TGIMIPK-------------GVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp EEEECCT-------------TCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-------------CCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 7776631 11236788888876 99998863 34578865 45899999999999998865
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=207.21 Aligned_cols=318 Identities=14% Similarity=0.064 Sum_probs=204.1
Q ss_pred CcHHHHHHHHHHHHcCC---CCC---C--CCHHHHHHHHHHHhhCCCC---CEE--EEeCChHHHHHHHHHHHHhcc---
Q 015230 53 ADDQVLAALGETMKKGT---SFG---A--PCLLENVLAEMVISAVPSI---EMV--RFVNSGTEACMGVLRLARAFT--- 116 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~---~~~---~--~~~~~~~l~~~l~~~~~~~---~~v--~~~~~g~~a~~~al~~~~~~~--- 116 (411)
.++.+.+++.+++.... .+. + ....+.++.+++++.++.. +++ ++|+||++|+..++++++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 45667777766665421 111 1 1456678889999999732 677 999999999999999775443
Q ss_pred ---CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 117 ---GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 117 ---~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
.++.|++..++|++ +..+....|.++..++......+ |+++++++++ +++++|++++++
T Consensus 188 ~g~~~d~Vi~~~~~~~~-~~~~~~~~G~~v~~v~~~~~~~~--------------d~~~Le~~i~---~~~~~v~~~~~~ 249 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAA-FDKAAQYFGIKLVRTPLDADYRA--------------DVAAMREAIT---PNTVVVAGSAPG 249 (514)
T ss_dssp HCCSSCEEEEETTSCTH-HHHHHHHHTCEEEEECBCTTSCB--------------CHHHHHHHCC---TTEEEEEEETTC
T ss_pred cCCCCCeEEEeCccchH-HHHHHHHcCCeeEEeeeCCCCCC--------------CHHHHHHHhc---cCCEEEEEeCCC
Confidence 12688888888876 44444455655555443221111 8999999886 368888888888
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c-----ccc---CccccccCCCcchhhhhhhccCCcccccccc
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-----LAY---GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 264 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~-----~g~---~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~ 264 (411)
+++|.+.+ +++|.++|++||++||+||+|+++ . .|. .+.....+++..+.+++|++.+|.++|+++.
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 88999988 999999999999999999999876 3 122 2223334554445578899888888999977
Q ss_pred cHHHHHHhcCC-CC----------cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 265 RRDIMEMVAPA-GP----------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 265 ~~~~~~~~~~~-~~----------~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
+++........ .. ...++....+.+++.+++..+.....+++.++.+++.+++.+.|+++ +....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI----PSLKI 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCEE
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEE
Confidence 66554432210 00 00111111122334444433322212567778888888888888764 22221
Q ss_pred EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceeee---cCCCHHHHHHHHHHHHHHHH
Q 015230 334 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS---LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~---~~~t~~~i~~~i~~l~~~~~ 409 (411)
......++++.... .+..++.+.|.++||++.... .+.+|+. ..++++++++++++|+++++
T Consensus 402 ~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 402 LGDPLWVIAVASDE--------------LNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp SSCCSSEEEEECSS--------------SCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEEeCCC--------------CCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 22224466664421 113678999999999884332 2345653 45577999999999999876
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 468 ~ 468 (514)
T 3mad_A 468 Q 468 (514)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-23 Score=195.68 Aligned_cols=331 Identities=13% Similarity=0.061 Sum_probs=199.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CC-----CHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
++..|+|+.++ . ..+|++++++.+.+.....+. +. .+...++.+++++.++ .++++++|+|+++|
T Consensus 17 ~~~~~Ld~~~~---~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNAT---T---PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTC---C---CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCcc---C---CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 56677776655 2 578999999999987732221 11 1234688888888887 56799999999999
Q ss_pred HHHHHHHHHh-c-----cCCcEEEEEeCCcCCCch----------------hhhhhcCCCCcccCCCCCCCCCCCCCCce
Q 015230 105 CMGVLRLARA-F-----TGRERIIKFEGCYHGHAD----------------PFLVKAGSGVATLGLPDSPGVPKGATYET 162 (411)
Q Consensus 105 ~~~al~~~~~-~-----~~~~~vi~~~~~~~~~~~----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 162 (411)
+..+++.+.. + .+++.|++..++|++... ......|..+..++.....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~-------- 162 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQ-------- 162 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSS--------
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCC--------
Confidence 9999986531 1 356889999999987411 111112443444332211111
Q ss_pred eecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC----------CEEEEeccccccccc
Q 015230 163 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG----------ALLIFDEVMTGFRLA 232 (411)
Q Consensus 163 ~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~----------~~li~De~~~g~~~g 232 (411)
.|++++++.++ +++++|+++++++++|.+.+ +++|.++|++|+ +++|+||+|+....
T Consensus 163 -----~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~- 229 (432)
T 3a9z_A 163 -----VEVEDILAAVR---PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR- 229 (432)
T ss_dssp -----CCHHHHHHTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-
T ss_pred -----cCHHHHHHhcc---CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-
Confidence 17899988776 36889999999999999998 999999999999 99999999962221
Q ss_pred cCccccccCCCcch--hhhhhhccCCcccccccccHHH-HHHhcCCCC----cccccCCCCCHHHHHHHHHHHHHHhc--
Q 015230 233 YGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDI-MEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE-- 303 (411)
Q Consensus 233 ~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~-~~~~~~~~~----~~~~~t~~~~~~~~a~~~~~l~~~~~-- 303 (411)
....... .+|+ .|++|+++ .++|+++++++. ...+.+... .....+++.++.+++++.++++.+++
T Consensus 230 -~~~~~~~--~~d~~~~s~~K~~g--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~ 304 (432)
T 3a9z_A 230 -RVDVEDL--GVDFLTIVGHKFYG--PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENC 304 (432)
T ss_dssp -CCCHHHH--CCSEEEEEGGGTTC--CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -ccChhhc--CCCEEEEehhHhcC--CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhH
Confidence 1111112 3454 47899874 579999888765 332321100 01122456788888888788876654
Q ss_pred CChHHHHHHHHHHHHHHHHHHH-HhcCCceE---EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 304 PGTYEYLNKITGELTQGIIDAG-KKAGHAIC---GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
++++++++++.+++.+.|+++. ........ ....+.+++|.+.+... + ...+.+.+ +|+.+.
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~l--~~i~~~ 370 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---------R---GYMVLAQC--QTLLAS 370 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC---------C---HHHHHHHC--SSEECB
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---------c---HHHHHHHh--cCeEEe
Confidence 6677888888888888888752 11110000 11235577777743210 1 12333333 244443
Q ss_pred cC------------------C------CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 380 PS------------------Q------FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ~~------------------~------~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
.+ + ...+|+++. +|++++++++++|++++++
T Consensus 371 ~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 371 VGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp SSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 1 145787644 4899999999999998765
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=202.32 Aligned_cols=326 Identities=14% Similarity=0.067 Sum_probs=191.6
Q ss_pred ecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--------CCCHHHHHHHHHHHhhCC-CCCEEEEeCChH
Q 015230 32 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGT 102 (411)
Q Consensus 32 ~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 102 (411)
+.++..|+|+.++ . ..+|++++++.+.+....... +..+..+++.+++++.++ .++++++|+||+
T Consensus 17 ~~~~~iyld~~~~---~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t 90 (400)
T 3vax_A 17 RGSHMTYLDAAAT---T---RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGAT 90 (400)
T ss_dssp -----CCCCCCCC---S---SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHH
T ss_pred ccCCcEEecCCCC---C---CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHH
Confidence 3455667787665 2 368999999999987521111 123446789999999987 568999999999
Q ss_pred HHHHHHHHHHHhc--cCCc-EEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 103 EACMGVLRLARAF--TGRE-RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 103 ~a~~~al~~~~~~--~~~~-~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
+|+..+++.+... .+++ .|++..+.|++.......+ .|..+..++... .+. -|++++++.+
T Consensus 91 ~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i 156 (400)
T 3vax_A 91 ESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SGR-------------ISVEGVMERL 156 (400)
T ss_dssp HHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TCC-------------CCHHHHHTTC
T ss_pred HHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CCC-------------cCHHHHHHhc
Confidence 9999999854211 3466 8888888887654444433 233333333221 111 1889998887
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~ 255 (411)
+ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+. +.. ..+.... +|++ +++|.++
T Consensus 157 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~---~~~-~~~~~~~-~d~~~~s~~K~~g- 223 (400)
T 3vax_A 157 R---PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQGY---GKV-PGDLTTP-IDMISISGHKIGA- 223 (400)
T ss_dssp C---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTTT---TTS-GGGGGSC-CSEEEEETGGGTS-
T ss_pred C---CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhhc---CCC-CcChhhc-CcEEEEeHHHhCC-
Confidence 6 46889999999999999988 99999999999999999999971 111 1111222 5654 6779554
Q ss_pred Cccccccc-ccHH-HH---HHhcCCC----CcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHH
Q 015230 256 GLPVGAYG-GRRD-IM---EMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 256 G~~~g~~~-~~~~-~~---~~~~~~~----~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+..+|+++ ++++ +. ..+.+.. ........+.++.++++..++++.+.+ ++++++.+++.+++.+.|+ .
T Consensus 224 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~ 302 (400)
T 3vax_A 224 PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-S 302 (400)
T ss_dssp CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-C
Confidence 22477777 6652 11 1122110 001122445677777777777776554 5666777777777777776 2
Q ss_pred HHhcCCceEEee----ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------------------
Q 015230 325 GKKAGHAICGGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------------ 382 (411)
Q Consensus 325 ~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------------------ 382 (411)
+....... .+.++++.+.. .+..++.+.|. +||.+.++.
T Consensus 303 ----~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~ 363 (400)
T 3vax_A 303 ----TSFQVNGDQDHVVPHILNLSFED--------------VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGL 363 (400)
T ss_dssp ----TTCEECSCTTSBCTTEEEEECTT--------------CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTC
T ss_pred ----CCEEEeCCcccCCCCEEEEEeCC--------------CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCC
Confidence 22111111 23566665532 11367888888 999998853
Q ss_pred -----Ccceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 383 -----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 -----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+|+++ ..|++++++++++|++++++
T Consensus 364 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 364 PEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp CHHHHTSEEEEEEEEC--------------------
T ss_pred CccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 24577765 56899999999999998764
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=204.98 Aligned_cols=345 Identities=11% Similarity=0.055 Sum_probs=200.9
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH-HhhCC------CCCEEEEeCChHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMV-ISAVP------SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l-~~~~~------~~~~v~~~~~g~~a~~~ 107 (411)
++||..+ ..++.++.+.+++.+.+.. ..|+ +..++++++++.+ .+... ..++|++|+|+++++..
T Consensus 106 ~i~l~~g----~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~ 180 (546)
T 2zy4_A 106 SLSYVRD----QLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAY 180 (546)
T ss_dssp HHHHHHH----TSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHH
T ss_pred hhecccC----CCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHH
Confidence 4555544 4467778888888887753 2332 3456777766655 44332 24799999999999999
Q ss_pred HHHHH--Hh-ccCCcEEEEEeCCcCCCchhhhhhc-CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 108 VLRLA--RA-FTGRERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 108 al~~~--~~-~~~~~~vi~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+++.. +. ..+++.|++.+++|++....+.... |..+..++.....++. .|++++++.++ .+
T Consensus 181 ~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~ 245 (546)
T 2zy4_A 181 IFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQ------------YPDSELDKLKD---PA 245 (546)
T ss_dssp HHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTB------------CCHHHHGGGGS---TT
T ss_pred HHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCC------------CCHHHHHHhhC---CC
Confidence 98753 11 3456789999999987554432221 2222222221111111 17888877653 35
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHH--HHhCCEEEEecccccc-ccccCccccc-cCCCcchhhhhhhcc-CCcc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRIT--KENGALLIFDEVMTGF-RLAYGGAQEY-FGVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~--~~~~~~li~De~~~g~-~~g~~~~~~~-~~~~~d~~~~sK~~~-~G~~ 258 (411)
+++++++..+|++|.+.+ .+.+++|.++| ++||++||+||+|++| ...... ... .+....+.||||.++ +|+|
T Consensus 246 ~k~v~l~~p~NPtG~~~~-~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~-~~~~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 246 IKIFFCVNPSNPPSVKMD-QRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSL-FAICPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp EEEEEEESSCSSSCBCCC-HHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCH-HHHCGGGEEEEEESTTTTTCGGGC
T ss_pred CeEEEEECCCCCCCccCC-HHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCH-HHhCCCCEEEEEeCccccCCCCcc
Confidence 676666555666776655 44599999999 7899999999999977 322111 111 122233569999998 7999
Q ss_pred cccccccHH-HHHHhcCCC---------------------------------CcccccCCCCCHHHHHHHH-H-HHHHHh
Q 015230 259 VGAYGGRRD-IMEMVAPAG---------------------------------PMYQAGTLSGNPLAMTAGI-H-TLKRLK 302 (411)
Q Consensus 259 ~g~~~~~~~-~~~~~~~~~---------------------------------~~~~~~t~~~~~~~~a~~~-~-~l~~~~ 302 (411)
+||++++++ +++.+.... ......+.+.+.+++.+.. . ....+.
T Consensus 324 iG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~ 403 (546)
T 2zy4_A 324 LGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403 (546)
T ss_dssp EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence 999988775 666552100 0001223345556555432 1 112232
Q ss_pred c-CChHH----HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC----CCCcchhccc-chHHHHHHHHHHH
Q 015230 303 E-PGTYE----YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP----VYNFEDAKKS-ETTKFARFYRGML 372 (411)
Q Consensus 303 ~-~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~l~ 372 (411)
+ +...+ .++++.+.+.+.|. .++.......|+++|+++.... ...+. .+.. .......+.+.+.
T Consensus 404 ~~~~~~~~~r~~~~~r~~~l~~~L~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 404 EADEYKHTLKQLIRRRETTLYRELG-----MPPLRDENAVDYYTLIDLQDVTAKLYGEAFS-EWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHGGGT-----SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHH-HHHHHHCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcC-----CCcccCCCCeeEEEEEEHHHhhcccccHHHH-HHhhccCCHHHHHHHHHH
Confidence 2 22222 23333333322221 1222222345778898873200 00000 0000 0012345778888
Q ss_pred HcCeEeccCC-----CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 373 EEGVYFAPSQ-----FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 373 ~~Gi~v~~~~-----~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
++||.+.|+. .+.+|+++.. +++++++++++|++++.+
T Consensus 478 ~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 478 ETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp HHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred HCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 9999999974 2358998766 899999999999988764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=198.98 Aligned_cols=318 Identities=13% Similarity=0.081 Sum_probs=207.4
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
+.|+||.++. .++ +|++++++.+.++.. .+ +......++.+.+++.++ .+++++++||++|+..+++.+ ..
T Consensus 30 ~~~id~~~~~--~~~---~~~v~~a~~~~~~~~-~y-~~~~~~~~l~~~la~~~~-~~~~v~~~~Gt~a~~~~l~~~-~~ 100 (399)
T 2oga_A 30 VPFLDLKAAY--EEL---RAETDAAIARVLDSG-RY-LLGPELEGFEAEFAAYCE-TDHAVGVNSGMDALQLALRGL-GI 100 (399)
T ss_dssp BCSCCHHHHH--HHT---HHHHHHHHHHHHHHT-CC-SSSHHHHHHHHHHHHHTT-SSEEEEESCHHHHHHHHHHHT-TC
T ss_pred CcccccCcCC--CCC---CHHHHHHHHHHHhcC-CC-CCchhHHHHHHHHHHHHC-CCeEEEecCHHHHHHHHHHHh-CC
Confidence 5678988774 222 288999999998763 22 234667788888888885 347889999999999999853 14
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
.+++.|++..++|++.. ......|..+..++...... ..|++++++.++ +++++|+++ ++
T Consensus 101 ~~gd~vl~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~---~~~~~v~~~---n~ 160 (399)
T 2oga_A 101 GPGDEVIVPSHTYIASW-LAVSATGATPVPVEPHEDHP-------------TLDPLLVEKAIT---PRTRALLPV---HL 160 (399)
T ss_dssp CTTCEEEEESSSCTHHH-HHHHHTTCEEEEECBCSSSS-------------SBCHHHHHHHCC---TTEEEECCB---CG
T ss_pred CCcCEEEECCCccHHHH-HHHHHCCCEEEEEecCCCCC-------------CcCHHHHHHhcC---CCCeEEEEe---CC
Confidence 56688999999998743 34444455444433221101 118999998886 357777643 44
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c-cccCccccccCCCcchhhh----hhhccC-Cccccccccc-HH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-LAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGGR-RD 267 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~-~g~~~~~~~~~~~~d~~~~----sK~~~~-G~~~g~~~~~-~~ 267 (411)
+|.+.+ +++|.++|++||+++|+||+|+.+ . .+. .++..+|++++ ||++++ | +.|+++.+ ++
T Consensus 161 tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~ 230 (399)
T 2oga_A 161 YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPE 230 (399)
T ss_dssp GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHH
T ss_pred cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHH
Confidence 787777 999999999999999999999733 2 121 12323566644 699996 8 89998775 77
Q ss_pred HHHHhcCCCCc---------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-Eeee
Q 015230 268 IMEMVAPAGPM---------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYI 337 (411)
Q Consensus 268 ~~~~~~~~~~~---------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 337 (411)
+++.+...... ..+.++..++++++++.++++.++ ++.++.+++.+++.+.|+++. ++... ....
T Consensus 231 ~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~ 305 (399)
T 2oga_A 231 LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP---GIGLPVTAPD 305 (399)
T ss_dssp HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT---TCBCCCCCTT
T ss_pred HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC---CccccCCCCC
Confidence 77665421000 012234668888888887776543 345556666666666665431 11111 0111
Q ss_pred cceE--EEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---------------------------cceee
Q 015230 338 SGMF--GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFT 388 (411)
Q Consensus 338 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~ 388 (411)
+..+ .+.+... +..++.+.|.++||.+.++.. ..+|+
T Consensus 306 ~~~~~~~~~~~~~--------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi 371 (399)
T 2oga_A 306 TDPVWHLFTVRTE--------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSL 371 (399)
T ss_dssp EECCCSSEEEECS--------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEE
T ss_pred CcceeEEEEEECC--------------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEc
Confidence 2222 2333211 136789999999999987531 23676
Q ss_pred e--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 S--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 ~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+ ..+|++++++++++|+++++++
T Consensus 372 ~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 372 PIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4 5679999999999999988764
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=195.43 Aligned_cols=323 Identities=13% Similarity=0.079 Sum_probs=203.4
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCCC----CC-CH----HHHHHHHHHHhhCCCCCEEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFG----AP-CL----LENVLAEMVISAVPSIEMVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~~----~~-~~----~~~~l~~~l~~~~~~~~~v~~~~~g~~a 104 (411)
+.++|+.++ +++ +|++++++.+++.+ . ..+. +. .. +++.+.+++++.++.....+++++|++|
T Consensus 24 ~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a 97 (405)
T 2vi8_A 24 AKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQA 97 (405)
T ss_dssp HSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred cceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHH
Confidence 457787665 554 89999999999863 2 1111 11 12 2233446888888633444555677999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhh--hhhcCC--CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGS--GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~--~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+..+++.+ ..+++.|++..++|++..... ....|. .+...+...... ..|++++++.+++.
T Consensus 98 ~~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~l~~~i~~~ 162 (405)
T 2vi8_A 98 NMAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETH-------------VIDYDDVREKARLH 162 (405)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTC-------------SBCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCEEEEecccccchhcccchhhhccceeEEEecccccccC-------------CcCHHHHHHHHHhc
Confidence 99999864 456678888888776543211 112222 111111110001 11899999998742
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCC-Ccchh--hhhhhccC
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGV-TPDLT--TLGKIIGG 255 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~ 255 (411)
++++|++++.+ .|...+ +++|.++|++||++||+||+|+ |. ..+.. . .++ .+|++ |+||+++|
T Consensus 163 --~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~-~---~~~~~~di~~~s~sK~~~g 230 (405)
T 2vi8_A 163 --RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH-P---NPVPYAHFVTTTTHKTLRG 230 (405)
T ss_dssp --CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS-C---CSTTTCSEEEEESSSTTCC
T ss_pred --CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEccccccccccCcC-C---CccccCCEEEEeccccCCC
Confidence 35677775533 344444 9999999999999999999998 22 22211 1 111 35655 89999984
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+. .|++++++++++.+..... .....+.++..++++.++++.+.. ++++++++++.+++.+.|+++ ++..
T Consensus 231 ~~-gG~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~ 303 (405)
T 2vi8_A 231 PR-GGMILCQEQFAKQIDKAIF--PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----GFTL 303 (405)
T ss_dssp CS-CEEEEECHHHHHHHHHHHT--TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEE
T ss_pred CC-CeEEEEcHHHHHHHHhhhc--ccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CCeE
Confidence 32 2899889888877653211 111123356666666677776543 567788888888888888775 2221
Q ss_pred EE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------CcceeeecC------CCHH
Q 015230 333 CG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------HSSD 395 (411)
Q Consensus 333 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~~~~------~t~~ 395 (411)
.. .+.+.++++.+.... .+...+.+.|.++||.+.++. ...+|+++. ++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~ 371 (405)
T 2vi8_A 304 VSGGTDNHLLLVDLRPQQ------------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLE 371 (405)
T ss_dssp GGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHH
T ss_pred ecCCCCceEEEEEccCCC------------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHH
Confidence 11 134778888874211 123678888999999998752 234777533 6899
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|++++++
T Consensus 372 ~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 372 EMDEIAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998865
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=193.41 Aligned_cols=323 Identities=14% Similarity=0.082 Sum_probs=186.8
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCC----------CHHHHHHH-HHHHhhCCCCCEE-EEeCChHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP----------CLLENVLA-EMVISAVPSIEMV-RFVNSGTEAC 105 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~----------~~~~~~l~-~~l~~~~~~~~~v-~~~~~g~~a~ 105 (411)
.+++.++ .+ +.||++++++.+++......+++ .+..++++ +++++.++ .+.+ ++++||++|+
T Consensus 34 ~i~l~~~---~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~v~~~~Gs~a~ 107 (425)
T 3ecd_A 34 QVELIAS---EN--IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN-AGHANVQPHSGAQAN 107 (425)
T ss_dssp SEECCTT---CC--CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT-CSEEECCCSSHHHHH
T ss_pred ceeeecc---cC--CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC-CCCceeecCchHHHH
Confidence 4666555 22 23999999999988542111111 12345555 66666664 4444 5589999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCc-hhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHA-DPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+.+++.+ ..+++.|++.+++|++.. .... ...|.++...+.+..... . .-|++++++.+++. +
T Consensus 108 ~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~---~~d~~~l~~~i~~~--~ 172 (425)
T 3ecd_A 108 GAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDT--------M---LIDYDQVEALAQQH--K 172 (425)
T ss_dssp HHHHHHH--CCTTCEEEEECC------------------CEEEEECCCTTT--------S---SCCHHHHHHHHHHH--C
T ss_pred HHHHHHc--cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCccc--------C---ccCHHHHHHHHhhc--C
Confidence 9999864 556789999999998732 2221 122332222111111000 0 11899999999742 4
Q ss_pred EEEEEEc-ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcch--hhhhhhccCCcc
Q 015230 184 IAAIILE-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGLP 258 (411)
Q Consensus 184 ~~~vi~~-~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~ 258 (411)
+++|+++ |++ |...+ +++|.++|++||++||+||+|. |+ ..+..... .. .+|+ .|+||++ +|+|
T Consensus 173 ~~~v~~~~~~~---~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~ 241 (425)
T 3ecd_A 173 PSLIIAGFSAY---PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPR 241 (425)
T ss_dssp CSEEEEECSCC---CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCS
T ss_pred CcEEEEccccC---CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCC
Confidence 5667666 443 44445 9999999999999999999974 55 44432211 11 1344 4788999 4568
Q ss_pred ccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-c--CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 259 VGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 259 ~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+||++++ +.+.+.+... ...+.+.+.+....+++..++.... . ++++++++++.+++++.|++. ++....
T Consensus 242 ~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 315 (425)
T 3ecd_A 242 GGFVLTNDEEIAKKINSA--VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GVDLVT 315 (425)
T ss_dssp CEEEEESCHHHHHHHHHH--HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGG
T ss_pred cEEEEeCCHHHHHHHHhh--hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CCeecc
Confidence 9999887 5666665421 1111122334444444444443332 2 466777888888888888764 322111
Q ss_pred -eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec----cCC------Ccceeee------cCCCHHHH
Q 015230 335 -GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ------FEAGFTS------LAHSSDDI 397 (411)
Q Consensus 335 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~~------~~~~~~~------~~~t~~~i 397 (411)
...+.++++.+.... .....+.+.|.++||.+. |+. ...+|+. ..++++++
T Consensus 316 ~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i 383 (425)
T 3ecd_A 316 GGTDNHLLLVDLRPKG------------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEF 383 (425)
T ss_dssp GSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHH
T ss_pred CCCCceEEEEEeCCCC------------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHH
Confidence 134667788774311 123678888999999998 431 1235653 33468999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 384 ~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 384 REVGRLILEVFEA 396 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=200.56 Aligned_cols=344 Identities=15% Similarity=0.057 Sum_probs=202.6
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.|+.|+||.++.++.+ .++++.+++. .............++.+.+++.+ +.+++++|+||++|+..+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~y~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~al~~l- 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEAYAGSENFYHLERTVQELF-GFKHIVPTHQGRGAENLLSQLA- 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHHHH-
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhhcccChhHHHHHHHHHHHh-CCCcEEEeCCcHHHHHHHHHHh-
Confidence 5667899988753222 3566666554 22211123555667777777777 5568999999999999999854
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC--CCCCCCCCCceeecCCC-CHHHHHHHHHcCC-CcEEEEEE
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS--PGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIIL 189 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-d~~~l~~~~~~~~-~~~~~vi~ 189 (411)
. ++++ ++..++||+.+.......|..+..++.... ... ...+.++ |+++++++++... ..+++|++
T Consensus 111 -~-~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~-------~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l 180 (456)
T 2ez2_A 111 -I-KPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL-------NIAFKGDIDLKKLQKLIDEKGAENIAYICL 180 (456)
T ss_dssp -C-CTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC-------CCSCTTCBCHHHHHHHHHHHCGGGEEEEEE
T ss_pred -C-CCCC-EeccccccchhHHHHHHcCCEEEEecccccccccc-------cccccCCCCHHHHHHHHHhccccceeEEEE
Confidence 2 3334 888888877655666666665544332210 000 0000011 8999999997532 23577777
Q ss_pred c-ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc----------c-ccccCcc--ccccCCCcchhhh--hhhc
Q 015230 190 E-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGA--QEYFGVTPDLTTL--GKII 253 (411)
Q Consensus 190 ~-~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g----------~-~~g~~~~--~~~~~~~~d~~~~--sK~~ 253 (411)
+ |+|+++|. ..+.+++++|.++|++||++||+||+|+. + ..|.... .+..+..+|++++ +|..
T Consensus 181 ~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~ 259 (456)
T 2ez2_A 181 AVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDC 259 (456)
T ss_dssp ESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTT
T ss_pred eccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccC
Confidence 7 44447775 45677799999999999999999999973 3 3332210 0011233566544 4544
Q ss_pred cCCcccccccc-cHHHHHHhcCCCCcccc-cC-CCCCHHHHHH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 254 GGGLPVGAYGG-RRDIMEMVAPAGPMYQA-GT-LSGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 254 ~~G~~~g~~~~-~~~~~~~~~~~~~~~~~-~t-~~~~~~~~a~-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
+.| +.||+++ ++++++.+........+ .+ .+.+...+++ +.+.++.+. ++..++.+++.+++++.|++. +
T Consensus 260 ~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~----g 333 (456)
T 2ez2_A 260 LVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA----G 333 (456)
T ss_dssp CCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT----T
T ss_pred CCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC----C
Confidence 445 6888887 67777765421111111 11 1223333333 344443332 345666677777777777763 2
Q ss_pred CceEEeeecceEEEEEec--CCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----------------Ccceeee
Q 015230 330 HAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------------FEAGFTS 389 (411)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~-----------------~~~~~~~ 389 (411)
+.......|.++++.+.. .... ........+.+.| .++||.+.+.+ ...+|++
T Consensus 334 ~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis 406 (456)
T 2ez2_A 334 VPIVEPVGGHAVFLDARRFCEHLT-------QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLT 406 (456)
T ss_dssp CCBCSSCCSSEEEEEHHHHTTTSC-------GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEE
T ss_pred CccccCCCceEEEEEhHHhcCCCC-------hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEE
Confidence 221112347788887632 1110 0111135567777 67799864421 1457775
Q ss_pred cC---CCHHHHHHHHHHHHHHHHh
Q 015230 390 LA---HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~---~t~~~i~~~i~~l~~~~~~ 410 (411)
+. +|++++++++++|++++++
T Consensus 407 ~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 407 IPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 44 7999999999999998764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-23 Score=193.88 Aligned_cols=286 Identities=13% Similarity=0.047 Sum_probs=191.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 149 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~ 149 (411)
+..+..+++.+++++.++. ++++++++|++|+..+++.+ ..+++.|++..+.|++...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g~-~~~i~~~sG~~a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-------- 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLERG-EAGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFGI-------- 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcCC--------
Confidence 3577888999999998853 47778888999999999854 3466889999999987544331 22222
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
.+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+..
T Consensus 130 -----------~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 130 -----------NVRFVDAAKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp -----------EEEEECTTSHHHHHHHCC---TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred -----------EEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 344555568999998886 36889999999999999988 999999999999999999999733
Q ss_pred ccccCccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHH-HhcCCCCccccc-CCCCCHHHHHHHHHHHHHHhcCC
Q 015230 230 RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 305 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~-~~~~~~~~~~~~-t~~~~~~~~a~~~~~l~~~~~~~ 305 (411)
..+... .++.+..+.|+||++++ |+|+ |++++++++++ .+.. ..... +.+.++++++++.++++.+ +.
T Consensus 192 ~~~~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 263 (398)
T 2rfv_A 192 YCQQPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV---GLKDITGGCMSPFNAWLTLRGVKTL--GI 263 (398)
T ss_dssp TTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT---HHHHTTCCCCCHHHHHHHHHHHTTH--HH
T ss_pred ccCCch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH---HHHhCCCCCCCHHHHHHHHhhhhhH--HH
Confidence 111111 23444445789999984 8898 99999988876 5552 22222 4567888888888877543 22
Q ss_pred hHHHHHHHHHHHHHHHHHHH----------HhcCCceE----EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 306 TYEYLNKITGELTQGIIDAG----------KKAGHAIC----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
..++..++...+.+.|++.. ...+.... .++.|.++++++.+ .......+.+.+
T Consensus 264 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~l~~~~ 331 (398)
T 2rfv_A 264 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG------------GLEAGRRMINSV 331 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC------------CHHHHHHHHHhC
Confidence 34455566666666665431 00010000 02357888888732 112334555555
Q ss_pred HHcCeEeccCC---------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 372 LEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 372 ~~~Gi~v~~~~---------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
...|+.+.++. .+.+|++ ...++++++.++++|+++
T Consensus 332 ~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 332 ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 55577776652 2346774 555788888888888754
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=194.88 Aligned_cols=342 Identities=10% Similarity=0.028 Sum_probs=207.0
Q ss_pred CCCEEEeccCCccccccCC--CcHHHHHHHHHHHHcCCC--C---CCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTS--F---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~--~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a 104 (411)
|++..+|+..+..-+.-|. ..|.|++|....++.... | .+..++++.+++.+..... +....+.|.||+.|
T Consensus 42 d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga 121 (420)
T 4h51_A 42 AKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGA 121 (420)
T ss_dssp CCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHH
T ss_pred CCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHH
Confidence 3444688877743344554 236788887777766432 2 3457777888777643322 23345678999999
Q ss_pred HHHHHHHHHh-c-cCCcEEEEEeCCcCCCchhhhhhcCC-CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 105 CMGVLRLARA-F-TGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 105 ~~~al~~~~~-~-~~~~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
+..++.++.. + .+++.|++.+|+|..+. ......|. .+...+..+.... . .|.+.+.+.++..+
T Consensus 122 ~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~-~i~~~aG~~~V~~~~~~~~~~~---------~---~d~~~~~~~l~~~~ 188 (420)
T 4h51_A 122 VSLGAKLLTRVFDAETTPIYLSDPTWPNHY-GVVKAAGWKNICTYAYYDPKTV---------S---LNFEGMKKDILAAP 188 (420)
T ss_dssp HHHHHHHHTTTSCTTTSCEEEEESCCTHHH-HHHHHTTCCCEEEEECEEGGGT---------E---ECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCchhHH-HHHHHcCCeEEEeecccccccc---------C---CCHHHHHHHHhccC
Confidence 9988875533 3 35678999999997543 44444443 3332221111110 0 07788888887766
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc----Cccccc-cCCCcc---hhhhhhhc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY----GGAQEY-FGVTPD---LTTLGKII 253 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~----~~~~~~-~~~~~d---~~~~sK~~ 253 (411)
++..+++.++.+|++|... +.+.+++|.++|+++++++|+||+|.+|..|. .+.... .+..+. +.+|||.|
T Consensus 189 ~~~~vll~~~p~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 267 (420)
T 4h51_A 189 DGSVFILHQCAHNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNM 267 (420)
T ss_dssp SSCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccc
Confidence 6777777777777777554 46669999999999999999999999883221 111110 111122 34899999
Q ss_pred c-CCcccccccccHHHHHH---hcC-CCCcccccCCCCCHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYGGRRDIMEM---VAP-AGPMYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~~~~~~~~~---~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~------~~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ .|+|+||+++.....+. +.. ..........+.+..++.++...+.. ++. +.++++++++++.+.+.
T Consensus 268 ~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~ 347 (420)
T 4h51_A 268 GLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDE 347 (420)
T ss_dssp CCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 69999999664322211 110 00011122334455555555555431 111 45556666667777777
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~i~~ 399 (411)
|+++.....+.......|+|.+.-+. .+.++.|+++||++.+++ |++++ .++++|+.
T Consensus 348 L~~~g~~~~~~~i~~q~GmF~~~gls------------------~e~v~~L~e~~Vy~~~~g----Ris~Agl~~~ni~~ 405 (420)
T 4h51_A 348 LLRLQTPGSWEHVINQIGMFSFLGLS------------------KAQCEYCQNHNIFITVSG----RANMAGLTHETALM 405 (420)
T ss_dssp HHHTTCSSCCTHHHHCCSSEEECCCC------------------HHHHHHHHHTTEECCTTC----EEEGGGCCHHHHHH
T ss_pred HHHhCCCCCCCeecCCCceEEecCcC------------------HHHHHHHHhCCEEEcCCC----EEEeccCCHHHHHH
Confidence 76653211121123456777665331 233577889999999876 88754 69999999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
+.++|.++++++
T Consensus 406 ~a~aI~~vvr~i 417 (420)
T 4h51_A 406 LAQTINDAVRNV 417 (420)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=197.49 Aligned_cols=326 Identities=14% Similarity=0.072 Sum_probs=194.6
Q ss_pred EEEe-ccCCccccccCC-CcHHHHHHHHHHHHcC---C-CCCC-CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHH
Q 015230 37 EYID-YVGSWGPAIIGH-ADDQVLAALGETMKKG---T-SFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 37 ~~~d-~~~~~~~~~~g~-~~~~v~~a~~~~l~~~---~-~~~~-~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al 109 (411)
+++| |.++ +++|+ .||.+.+++.+.++.. . ...| ......++.+++++.++ .+..++++||++|+..++
T Consensus 4 ~~~~~~~~~---~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~-~~~~i~~~~G~~a~~~al 79 (357)
T 3lws_A 4 RLRTSFQQT---TGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG-MDDAVFFPSGTMAQQVAL 79 (357)
T ss_dssp HHHHHHHTC---SEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHH
T ss_pred hhhhHHHhh---cccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC-CCcEEEecCcHHHHHHHH
Confidence 4455 4455 78888 7888888887777751 1 1112 23556778888888775 455677789999999988
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
+.+.. .+++++|+.++.+|..... .....|..+..++. ..+. -|+++++++ .+ +++
T Consensus 80 ~~~~~-~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~-------------~d~~~l~~~----~~-~~~ 138 (357)
T 3lws_A 80 RIWSD-ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA--ADRL-------------MTLDEIKAL----PD-IAC 138 (357)
T ss_dssp HHHHH-HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC--TTSC-------------CCHHHHHTC----CS-CSE
T ss_pred HHHhh-cCCCcEEEecccceeeeeccchhhhccCcEEEEecC--CCCC-------------cCHHHHhcC----cC-cce
Confidence 75432 2222255555555432221 12223333333221 1111 188888765 22 566
Q ss_pred EEEcccCCCC-CccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccc-cCCCcchhhhhhhccCCccccc
Q 015230 187 IILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEY-FGVTPDLTTLGKIIGGGLPVGA 261 (411)
Q Consensus 187 vi~~~~~~~~-G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~-~~~~~d~~~~sK~~~~G~~~g~ 261 (411)
+++++++|++ |. ..+.+.+++|.++|++||++||+||+|. +. ..+.... .. ...+.-+.|+||++++. ..|+
T Consensus 139 v~~~~p~np~~G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~~~~~d~~~~s~sK~~~~~-~gg~ 215 (357)
T 3lws_A 139 LLLELPQREIGGV-APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-EIAGLFDSIYISFYKGLGGI-AGAI 215 (357)
T ss_dssp EEEESSBGGGTSB-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-HHHTTSSEEEEESSSTTCCS-SCEE
T ss_pred EEEEcccccCCce-eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-HHHhcCCEEEEeccccCCCC-ceEE
Confidence 6666666555 55 4556669999999999999999999986 11 1221111 11 11111245899999541 1288
Q ss_pred ccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE--Eeeecc
Q 015230 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISG 339 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~ 339 (411)
+++++++++.+......+.++....++ .++++.++++... +. ..+..++.+++.+.|+++ +.... ....++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~ 288 (357)
T 3lws_A 216 LAGPAAFCQTARIWKRRYGGDLISLYP-YIVSADYYYELRK-DR-MGQYYEQAKQLAEQFNAL----PGVHTTPEVPVSN 288 (357)
T ss_dssp EEECHHHHHHHHHHHHHTTCCCSCCHH-HHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHTS----TTEEEESSSCSSS
T ss_pred EEcCHHHHHHHHHHHHHhcCCcccchH-HHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhC----CCCeeccCCCcce
Confidence 888998888775311111122222333 3344445665432 33 344567777777777654 32222 134577
Q ss_pred eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---c--ceeee-----cCCCHHHHHHHHHHHHHHH
Q 015230 340 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---E--AGFTS-----LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~--~~~~~-----~~~t~~~i~~~i~~l~~~~ 408 (411)
++|+++... ......++.+.|.++||.+.++.. + .+|++ ...+.+++++++++|.+++
T Consensus 289 ~~~~~~~~~-----------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 289 MFHLHFDGQ-----------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEEEEESC-----------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEEEEecCC-----------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 888888531 112346788999999999998742 1 35553 3468999999999998875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=195.42 Aligned_cols=313 Identities=12% Similarity=0.060 Sum_probs=201.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHhhCCC-----CCEEEEeCChHHHHHHHHHHHHh-ccCCcEEEEE
Q 015230 53 ADDQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLARA-FTGRERIIKF 124 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~-----~~~v~~~~~g~~a~~~al~~~~~-~~~~~~vi~~ 124 (411)
.+|++++++.+.+.. +.++ .....++.+++++.++. ++++++|+||++|+..+++.+.. ..+++.|++.
T Consensus 16 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG---HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC---TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 567777776554332 2122 12345666777777652 48999999999999999985421 1456778787
Q ss_pred eC-CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCH
Q 015230 125 EG-CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 203 (411)
Q Consensus 125 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~ 203 (411)
+. .||..........|..+..++..+..+. .|++++++.++. +++++|+++++++++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~-- 155 (385)
T 2bkw_A 93 STGTFSDRFADCLRSYGAQVDVVRPLKIGES-------------VPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD-- 155 (385)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCSSTTSC-------------CCHHHHHHHHHH--SCCSEEEEESEETTTTEECC--
T ss_pred cCCcchHHHHHHHHHcCCceEEEecCCCCCC-------------CCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC--
Confidence 55 5554322333344554444433111111 189999999974 25678888888888999888
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccccccccCccccccCCCcch--hhhhhhccCCcccccccccHHHHH-HhcC----
Q 015230 204 DFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIME-MVAP---- 274 (411)
Q Consensus 204 ~~l~~i~~l~~~~--~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~-~~~~---- 274 (411)
+++|.++|++| |+++|+||+|+.... .+....+ .+|+ .+++|+++|+..+|++++++++++ .+..
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~ 229 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNG 229 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHC
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCC
Confidence 99999999999 999999999972111 1112222 3454 467898875334699988888776 5420
Q ss_pred -CC----------C---cccc----cCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHH-HHHHHhcCCce
Q 015230 275 -AG----------P---MYQA----GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI-IDAGKKAGHAI 332 (411)
Q Consensus 275 -~~----------~---~~~~----~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 332 (411)
.. . .+.. ...+.+..+++++.++++.+.+ ++++++++++.+++.+.| +++ ++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~ 305 (385)
T 2bkw_A 230 HVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL----QLTS 305 (385)
T ss_dssp CCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT----CCEE
T ss_pred CCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc----Ccee
Confidence 00 0 0000 0235677777777778876543 345677777777777777 553 2211
Q ss_pred EE-e----eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----cceeee-cC-----CCHHH
Q 015230 333 CG-G----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTS-LA-----HSSDD 396 (411)
Q Consensus 333 ~~-~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----~~~~~~-~~-----~t~~~ 396 (411)
.. . ..+.++++.+. . ..++.+.|.++||.+.++.. ..+|++ +. +|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVA-------------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp SSCSSSTTBCSSCEEEECS-------------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred cccCcccccCCceEEEecC-------------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 11 1 24677888762 1 36788899999999998742 347876 43 69999
Q ss_pred HHHHHHHHHHHHHhC
Q 015230 397 IQHTITAAEKVLRQI 411 (411)
Q Consensus 397 i~~~i~~l~~~~~~~ 411 (411)
+++++++|+++++++
T Consensus 370 i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 370 MKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=200.02 Aligned_cols=348 Identities=13% Similarity=-0.006 Sum_probs=199.6
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.|+.|+||.++.++ |++++++.+++..+...........++++++++.+ +.++++||+||++|++.++++++
T Consensus 39 ~~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~~gt~A~~~al~~~~ 110 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_dssp GGGCSEECSCCSSC-------SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEEC--CCSHHHHHHHHH
T ss_pred CCCeeEecccCCCc-------HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHh-CcCcEEEcCCcHHHHHHHHHHHh
Confidence 46789999877432 78888998888764322223455567777887777 56899999999999999999875
Q ss_pred hcc----C--C-cEEEEEeCCcCCCchhhhh-hcCCCCcccCCCCCCCCCCCCCCceeecCC-CCHHHHHHHHHcCC-Cc
Q 015230 114 AFT----G--R-ERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNK-GE 183 (411)
Q Consensus 114 ~~~----~--~-~~vi~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~-~~ 183 (411)
..+ + + +.|++. .+|+.+..... ..+......... ..++. .......+ -|++++++++++.. ++
T Consensus 111 ~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~d~~~Le~~i~~~~~~~ 183 (467)
T 2oqx_A 111 KKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIK--EAFDT---GVRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp HHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCT--TTTCT---TSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred ccccccCCCCccceEEec--ccccccchhhhhccCcceeecccc--ccccC---CCCCCccCCcCHHHHHHHHHhcCCCc
Confidence 431 3 1 555554 56644322222 222211110000 00000 00000011 18999999998532 36
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc----------c-ccccCc-ccc--c-cCCCcchhh
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGG-AQE--Y-FGVTPDLTT 248 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g----------~-~~g~~~-~~~--~-~~~~~d~~~ 248 (411)
+++|+++++++++|...++.+++++|+++|++||++||+|++|.. . ..|... .+. . ...+..+.+
T Consensus 184 ~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s 263 (467)
T 2oqx_A 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEE
T ss_pred eeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEe
Confidence 889999988887655666778899999999999999999976642 1 112111 000 0 011122457
Q ss_pred hhhhccCCccc-ccccccHH----HHHHhcCCCCcc-cccCCCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015230 249 LGKIIGGGLPV-GAYGGRRD----IMEMVAPAGPMY-QAGTLSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321 (411)
Q Consensus 249 ~sK~~~~G~~~-g~~~~~~~----~~~~~~~~~~~~-~~~t~~~~-~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 321 (411)
+||+++. |+ |+++++++ .+..+....... ...+++.. ..++++....++...+++..++..++.+++.+.|
T Consensus 264 ~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L 341 (467)
T 2oqx_A 264 AKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGL 341 (467)
T ss_dssp SSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 8998863 54 45566655 333332100000 01122222 2222222222232221235566778888888888
Q ss_pred HHHHHhcCCceEEeeecceEEEEEec--CCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCC---------------
Q 015230 322 IDAGKKAGHAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQF--------------- 383 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~--------------- 383 (411)
+++ ++... ...|.++++++.+ .... ........+.+.| .++||.+.+++.
T Consensus 342 ~~~----~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~ 409 (467)
T 2oqx_A 342 EEI----GVVCQ-QAGGHAAFVDAGKLLPHIP-------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPC 409 (467)
T ss_dssp HHT----TCCEE-EECSSCEEEEHHHHSTTSC-------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCC
T ss_pred HHC----CCeee-cCCceEEEEechhhcccCC-------cccccHHHHHHHHHHhcCceecccccccccccccccccccC
Confidence 875 33222 3457788887742 1110 0111146678888 888999987431
Q ss_pred --cceeeecC---CCHHHHHHHHHHHHHHHHh
Q 015230 384 --EAGFTSLA---HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 --~~~~~~~~---~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|+++. +|++++++++++|++++++
T Consensus 410 ~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp SCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 45787544 8999999999999998764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-23 Score=192.50 Aligned_cols=282 Identities=14% Similarity=0.106 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.....+++.+.+++.++ .+++++++||++|++.+++.+ ..++++|++..+.|++.........
T Consensus 63 ~~~~~~~~l~~~la~~~g-~~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 126 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVED-AAFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVF------------- 126 (392)
T ss_dssp TCCHHHHHHHHHHHHHTT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTG-------------
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHH-------------
Confidence 356677888999988884 458999999999999999854 4567899999999986443321110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
...+..+..++.+|+++++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+..
T Consensus 127 ---~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~--- 193 (392)
T 3qhx_A 127 ---TGWNVEYTPVALADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP--- 193 (392)
T ss_dssp ---GGGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT---
T ss_pred ---HhcCcEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01123455666679999999886 47899999999999999988 999999999999999999999732
Q ss_pred cCccccccCCCcchh--hhhhhccC-C-ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 233 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~--~~sK~~~~-G-~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
+.....+..+|++ |++|.+++ | +++|+++.+ +++.+.+.. .....+...+++.++++...++.+. ...
T Consensus 194 --~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l~--~~~ 266 (392)
T 3qhx_A 194 --ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF---LQNGAGAVPGPFDAYLTMRGLKTLV--LRM 266 (392)
T ss_dssp --TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred --ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHHH--HHH
Confidence 1112223345655 59999995 5 789999886 677777652 2233456778888888777665432 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEE------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHH
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 369 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (411)
++..++..++.+.|++. +....+ ++.|.+++|++.. .....+.+.+
T Consensus 267 ~~~~~~~~~l~~~L~~~----~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~------------~~~~~~~~~~ 330 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEH----PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA------------GRTAAEQLCA 330 (392)
T ss_dssp HHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC------------cHHHHHHHHH
Confidence 55666666666666543 332222 3458899998842 1244577788
Q ss_pred HHHHcCeEeccCCCcc------------------------eeeecCCCHHHHHHHHHHHHHHH
Q 015230 370 GMLEEGVYFAPSQFEA------------------------GFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 370 ~l~~~Gi~v~~~~~~~------------------------~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
.|...|+.+..++... +|++ ...++.+..++.|.+++
T Consensus 331 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlS--vg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 331 KTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLS--VGIEDVADLLDDLKQAL 391 (392)
T ss_dssp HCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEE--CCSSCHHHHHHHHHHHH
T ss_pred hCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEE--eccCCHHHHHHHHHHHh
Confidence 8877788777665322 3333 34456777777777665
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=196.07 Aligned_cols=315 Identities=16% Similarity=0.089 Sum_probs=190.5
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 48 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
+++| .+|++++++.+.+.. ...++.....++.+++++.++ .+..++++||++|+..+++.+.. .++..+|+.++.
T Consensus 23 ~~~g-~~p~v~~ai~~~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~i~~~~g~~a~~~a~~~~~~-~g~~~vvi~~~~ 97 (359)
T 3pj0_A 23 RNVG-VLTEALQNIDDNLES--DIYGNGAVIEDFETKIAKILG-KQSAVFFPSGTMAQQIALRIWAD-RKENRRVAYHPL 97 (359)
T ss_dssp CBHH-HHHHHTTTSCTTCBC--CBTTBSHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTT
T ss_pred cccC-CCHHHHHHHHhhccc--CcccCCHHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHHHh-cCCCcEEEEecc
Confidence 4444 567787777764332 222356677888888888885 34456778999999999986533 233335555555
Q ss_pred cCCCchh--hh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 128 YHGHADP--FL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 128 ~~~~~~~--~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
+|..... .. ...|..+..++.. .+. -|+++++++ . +++++|++++++|++|....+.+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~v~~~--~~~-------------~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~ 158 (359)
T 3pj0_A 98 SHLEIHEQDGLKELQQITPLLLGTA--NQL-------------LTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFE 158 (359)
T ss_dssp CHHHHSSTTHHHHHHCCEEEECSCT--TSC-------------CCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHH
T ss_pred ceeeehhcchHHHhcCceEEecCCc--CCC-------------cCHHHHHhc-c---CCceEEEEEecccCCCcccCCHH
Confidence 5432221 11 2345444333221 111 188888876 2 46677777766655543445566
Q ss_pred HHHHHHHHHHHhCCEEEEecccccc---ccccCccccccCCCcch--hhhhhhccCCcccccccccHHHHHHhcCCCCcc
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 279 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~---~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~ 279 (411)
.+++|.++|++||++||+||+|..+ ..+... . .+....|+ .++||+++++.. |++++++++++.+.......
T Consensus 159 ~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~-~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~ 235 (359)
T 3pj0_A 159 ELEKISEYCHEQGISLHLDGARLWEITPFYQKSA-E-EICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRY 235 (359)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH-H-HHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEECcchhcchhhhCCCH-H-HhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHh
Confidence 6999999999999999999998632 112111 1 11112343 489999986422 66788998888775311111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE--EeeecceEEEEEecCCCCCcchhc
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFFTEGPVYNFEDAK 357 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~ 357 (411)
.++.+..++.+ +++..+++.. .+..++.+++.+++.+.|+++ +.... ....+.++++.+..
T Consensus 236 ~~~~~~~~~~~-~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~---------- 298 (359)
T 3pj0_A 236 GGDLISLYPYI-LSADYYFEKR--IGKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFEN---------- 298 (359)
T ss_dssp TCCCSCCHHHH-HHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESS----------
T ss_pred CCCcchhHHHH-HHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecC----------
Confidence 22233333443 3344555543 234455677777777777764 32222 12456778887742
Q ss_pred ccchHHHHHHHHHHHHcCeEeccCCC------cceeee-----cCCCHHHHHHHHHHHHHH
Q 015230 358 KSETTKFARFYRGMLEEGVYFAPSQF------EAGFTS-----LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 358 ~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~-----~~~t~~~i~~~i~~l~~~ 407 (411)
+...+...+.+.|.++||.+.++.. ..+|++ ...+.+++++++++|.++
T Consensus 299 -~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 299 -SADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp -CHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred -ccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 1223457899999999999999842 235553 346899999999999875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=191.38 Aligned_cols=311 Identities=14% Similarity=0.056 Sum_probs=202.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 132 (411)
-++++++++.+.++... + ++.....++.+.+++.+ +.+++++++||++|+..+++.+ ...+++.|++..++|++..
T Consensus 18 ~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~al~~~~~~~-~~~~gd~Vl~~~~~~~~~~ 93 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGW-I-TTGPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVSTL 93 (393)
T ss_dssp CCHHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHH
T ss_pred CCHHHHHHHHHHHhcCC-c-CCChHHHHHHHHHHHHh-CCCcEEEecChHHHHHHHHHHc-CCCCCCEEEeCCCccHhHH
Confidence 35788999999988742 2 24566677777777777 4568999999999999999853 1456788999999998754
Q ss_pred hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 133 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
......|..+..++.... +.. .|++++++.++ +++++|++++ ++|...+ +++|.++
T Consensus 94 -~~~~~~g~~~~~v~~~~~-~~~------------~d~~~l~~~l~---~~~~~v~~~~---~~G~~~~----~~~i~~l 149 (393)
T 1mdo_A 94 -NMIVLLGANPVMVDVDRD-TLM------------VTPEHIEAAIT---PQTKAIIPVH---YAGAPAD----LDAIYAL 149 (393)
T ss_dssp -HHHHHTTCEEEEECBCTT-TCC------------BCHHHHHHHCC---TTEEEECCBC---GGGCCCC----HHHHHHH
T ss_pred -HHHHHCCCEEEEEeccCC-cCC------------CCHHHHHHhcC---CCceEEEEeC---CCCCcCC----HHHHHHH
Confidence 334445554444332211 110 18999998886 3577777764 4677766 9999999
Q ss_pred HHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhh--hhccCCccccccccc-HHHHHHhcCCCCc-------
Q 015230 213 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPM------- 278 (411)
Q Consensus 213 ~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~s--K~~~~G~~~g~~~~~-~~~~~~~~~~~~~------- 278 (411)
|++||+++|+||+|+ |+ ..+. .++. +|++ |++ |++++| ++|+++.+ +++++.+......
T Consensus 150 ~~~~~~~li~D~a~~~g~~~~~~-----~~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (393)
T 1mdo_A 150 GERYGIPVIEDAAHATGTSYKGR-----HIGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW 222 (393)
T ss_dssp HHHHTCCBCEECTTCTTCEETTE-----ETTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHHcCCeEEEECccccCCeECCe-----ecCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence 999999999999998 44 3222 1222 5665 555 888755 78999875 7777765421110
Q ss_pred ----------c----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce--EEeeecceEE
Q 015230 279 ----------Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFG 342 (411)
Q Consensus 279 ----------~----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~~~~ 342 (411)
+ .+..+..+++.++.+...++.+ ++..++.+++.+++++.|+++..+..... .....+.+++
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 300 (393)
T 1mdo_A 223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFI 300 (393)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEE
T ss_pred hhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEE
Confidence 0 0001335777777766665543 34556666677777777765411110000 1223455788
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc-------------------------ceeeecC--CCHH
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTSLA--HSSD 395 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-------------------------~~~~~~~--~t~~ 395 (411)
+.+.... ...+..++.+.|.++||.+.++..+ .+|++.. +|++
T Consensus 301 v~~~~~~----------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~ 370 (393)
T 1mdo_A 301 IRVDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTES 370 (393)
T ss_dssp EECCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHH
T ss_pred EEecccc----------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHH
Confidence 8774200 0112367899999999999886422 3677644 7999
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|+++++.
T Consensus 371 ~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 371 DFDRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=192.47 Aligned_cols=313 Identities=13% Similarity=0.076 Sum_probs=187.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-----------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 53 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~-----------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.+|++++++.+.+.+....+++ .+.++.+.+++++.++ ..+++++ ++|++|++.+++.+ ..+++.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~-~sGt~a~~~~~~~~--~~~gd~ 113 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQP-NSGSQANQGVYAAL--INPGDK 113 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHH--SCTTCE
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEe-ccHHHHHHHHHHHh--cCCCCE
Confidence 4899999999888542211111 2334455567777776 4444655 45699999999864 456789
Q ss_pred EEEEeCCcCCCchhh--hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 121 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 121 vi~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
|++.+++|++..... ....|.+....+.+..... ..|++++++.+++. ++++|++++.+ .|.
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~i~~~--~~~~v~~~~~~--~G~ 177 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDG------------RIDYEKVREIAKKE--KPKLIVCGASA--YAR 177 (417)
T ss_dssp EEEECC----------------CCSEEEEECCCTTS------------SCCHHHHHHHHHHH--CCSEEEECCSS--CCS
T ss_pred EEecccccccccchhhhhhhhcceeeeEeccCCCCC------------CcCHHHHHHHHHhc--CCeEEEECCcc--cCc
Confidence 999999998653311 1222222221111111111 02899999999742 45666665544 377
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCccccccccc-HHHHHHhc
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVA 273 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~-~~~~~~~~ 273 (411)
..+ +++|.++|++||++||+||+|+ |+ ..+.... .. . ..|++ ++||++ +|+|.||++++ +++++.+.
T Consensus 178 ~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~~-~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 178 VID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS-PF-P-YAHVVSSTTHKTL-RGPRGGIIMTNDEELAKKIN 249 (417)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-CT-T-TCSEEEEESSTTT-CSCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC-cc-c-cceEEEeeCcccc-CCCCeeEEEECCHHHHHHHh
Confidence 777 9999999999999999999984 54 3332110 00 1 23554 667999 56688999887 78877765
Q ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCC
Q 015230 274 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGP 349 (411)
Q Consensus 274 ~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 349 (411)
... ..+.+.+.++..+++..+++..... ++++++++++.+++.+.|++. ++.... ...+.++++++....
T Consensus 250 ~~~--~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~ 323 (417)
T 3n0l_A 250 SAI--FPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR----KFKLVSDGTDNHLVLMSFLDRE 323 (417)
T ss_dssp HHH--TTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECTTSS
T ss_pred hhh--CCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CceeccCCCCceEEEEEcccCC
Confidence 311 1222334455666665556654322 456667777777777777763 222111 123557777764221
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------cceeee------cCCCHHHHHHHHHHHHHHHHh
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTS------LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----------~~~~~~------~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.....+.+.|.++||.+.+... ..+|+. ..++++++++++++|++++++
T Consensus 324 ------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 324 ------------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp ------------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 1236788888999999985421 225653 236799999999999998864
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=188.75 Aligned_cols=320 Identities=12% Similarity=0.070 Sum_probs=197.7
Q ss_pred CCC-EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCC--CCEEEEeCChHHHHHHHHH
Q 015230 34 DGN-EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLR 110 (411)
Q Consensus 34 ~g~-~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~g~~a~~~al~ 110 (411)
.|. .++|+..+ .+..-.++++++++. . +..+..+++++++.+++.++. ++++++++||++|+..+++
T Consensus 25 ~g~~~v~~~~~~---~~~~~~~~~v~~a~~----~---~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~ 94 (374)
T 2aeu_A 25 KGRDALYDLSGL---SGGFLIDEKDKALLN----T---YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATIL 94 (374)
T ss_dssp TCGGGCEECSSC---CCCCCCCHHHHHHHT----S---TTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred cCccceeeeccc---CCCCCCCHHHHHHHH----H---hcCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHH
Confidence 354 56676665 222236778888775 2 223345566777777777753 3899999999999999998
Q ss_pred HHHhccCCcEEEEEeCCcCCCchhh--hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE-E
Q 015230 111 LARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-I 187 (411)
Q Consensus 111 ~~~~~~~~~~vi~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~-v 187 (411)
.+ +++.|++..++||++.... ....|. .+..+ .|++++++. + +++++ |
T Consensus 95 ~~----~gd~Vl~~~~~y~~~~~~~~~~~~~g~-------------------~~~~v--~d~~~l~~~-~---~~~~~~v 145 (374)
T 2aeu_A 95 AL----KPKKVIHYLPELPGHPSIERSCKIVNA-------------------KYFES--DKVGEILNK-I---DKDTLVI 145 (374)
T ss_dssp HH----CCSEEEEECSSSSCCTHHHHHHHHTTC-------------------EEEEE--SCHHHHHTT-C---CTTEEEE
T ss_pred hC----CCCEEEEecCCCCccHHHHHHHHHcCc-------------------EEEEe--CCHHHHHhc-C---CCccEEE
Confidence 43 7789999999999865421 122222 22222 388888876 3 35677 8
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCccccccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~ 265 (411)
++++++|++|. +...+++|.++|++||+++|+||+|..+..+...........+|++ |+||+++ |+|+||++++
T Consensus 146 ~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~-g~~~G~~~~~ 221 (374)
T 2aeu_A 146 ITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME-GPRGGLLAGK 221 (374)
T ss_dssp EECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS-SCSCEEEEEE
T ss_pred EEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc-CcceEEEEEC
Confidence 88877777774 2233999999999999999999999644111110000011234544 7999976 4799999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHH----HHHHHHHHHhc----CCceEEeee
Q 015230 266 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL----TQGIIDAGKKA----GHAICGGYI 337 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~----~~~~~~~~~ 337 (411)
+++++.+.... .....+.++++++++.++++.+. .+..++..++.+.+ ++.|++..... ++.....+.
T Consensus 222 ~~~~~~l~~~~---~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~ 297 (374)
T 2aeu_A 222 KELVDKIYIEG---TKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT 297 (374)
T ss_dssp HHHHHHHHHHH---HTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS
T ss_pred HHHHHHHHHhh---ccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCc
Confidence 99988876321 11133568888888888887652 21334455555555 56665543321 222233445
Q ss_pred cceEEEE-EecCCCCCcchhcccchHHHHHHH-HHHHHcCeEeccCCC-----cceeeecCC---CHHHHHHHHHHHHHH
Q 015230 338 SGMFGFF-FTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQF-----EAGFTSLAH---SSDDIQHTITAAEKV 407 (411)
Q Consensus 338 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~v~~~~~-----~~~~~~~~~---t~~~i~~~i~~l~~~ 407 (411)
|++++.. +... ....+..+++ +.+.++||.+.|+.. +.+|+++.. ++.+++++.+.|+++
T Consensus 298 g~~~~~~~~~~~----------~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 298 GFVIKRVYKDDT----------INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp EEEEEEEESSHH----------HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred eEEEEeeccccc----------ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence 5554442 2100 0000112244 455678999988632 357886543 233488999999888
Q ss_pred HHh
Q 015230 408 LRQ 410 (411)
Q Consensus 408 ~~~ 410 (411)
+++
T Consensus 368 l~~ 370 (374)
T 2aeu_A 368 IKM 370 (374)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=198.10 Aligned_cols=320 Identities=13% Similarity=0.046 Sum_probs=206.0
Q ss_pred CcHHHHHHHHHHHHcCCC---CCC-----CCHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhcc----C
Q 015230 53 ADDQVLAALGETMKKGTS---FGA-----PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT----G 117 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~---~~~-----~~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~~----~ 117 (411)
.++.+.+++.+++..... +.+ ..+++.++.+++++.++ . .+++++++||++|+..+++.++... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 457888888888887321 111 14567789999999987 3 5799999999999999998775421 1
Q ss_pred --CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 118 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 118 --~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
++.|++..++|+ .+..+....|..+..++.....+.. |+++++++++ +++++|+++.++++
T Consensus 156 ~~~~~Vi~~~~~h~-~~~~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~p~np 218 (497)
T 3mc6_A 156 ITEPEIIAPVTAHA-GFDKAAYYFGMKLRHVELDPTTYQV-------------DLGKVKKFIN---KNTVLLVGSAPNFP 218 (497)
T ss_dssp CSSCEEEEETTSCH-HHHHHHHHSCCEEEEECBCTTTCSB-------------CTTTTGGGCC---SSEEEEEEETTCTT
T ss_pred CCCceEEEeCCccH-HHHHHHHHcCCeEEEEecCcccCcC-------------CHHHHHHHHh---hCCEEEEEECCCCC
Confidence 256766666655 4555555566655554433211111 7788888776 35788888888888
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc-----c--c--CccccccCCCcchhhhhhhccCCccccccccc
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-----A--Y--GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~-----g--~--~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~ 265 (411)
+|.+.+ +++|.++|++||++||+||+|+++ .. | . .+.....+++.-+.+++|++.+|.++|+++++
T Consensus 219 tG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~ 294 (497)
T 3mc6_A 219 HGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYR 294 (497)
T ss_dssp TCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECS
T ss_pred CCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEec
Confidence 999888 999999999999999999999866 32 1 1 12222334433344677988888889999877
Q ss_pred HHHHHHhcC-CCCcccccC-----C--CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 266 RDIMEMVAP-AGPMYQAGT-----L--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 266 ~~~~~~~~~-~~~~~~~~t-----~--~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
++.+..... ....+.+++ . +.+....++..++++.+.. +++.++..++.+++++.|++. .+.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~g~~~~ 371 (497)
T 3mc6_A 295 NSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IPDLDIM 371 (497)
T ss_dssp SHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CTTCEEC
T ss_pred CHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEe
Confidence 665544321 111111111 1 1111222233333443332 556677888888888888773 1222111
Q ss_pred -eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc-ceeee-cCCCHHHHHHHHHHHHHHHHh
Q 015230 335 -GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTS-LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 335 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-~~~~~-~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+.++.+.... .+..++.+.|.++||.+..+..+ .+|+. ..+|++++++++++|++++++
T Consensus 372 ~~~~~~~v~~~~~~--------------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 372 GNPRYSVISFSSKT--------------LNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp SCCCSSEEEEECTT--------------TTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEeCCC--------------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 2345565654321 12478999999999999876543 35553 256899999999999998765
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-23 Score=193.56 Aligned_cols=288 Identities=13% Similarity=0.041 Sum_probs=193.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.....+++.+++++.++ .+++++++||++|+..+++.+ ..+++.|++.++.|++..........
T Consensus 78 ~~~p~~~~l~~~la~~~g-~~~~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~~------------ 142 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIEG-APAAFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEILP------------ 142 (414)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHHH------------
T ss_pred CCChHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHHH------------
Confidence 457788999999999884 578999999999999988742 45678899999999874433211100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
..+..+..++.+|+++++++++ +++++|++++++|++|.+.+ +++|.++|++||++||+||+|+..
T Consensus 143 ----~~g~~~~~v~~~d~~~l~~ai~---~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~~--- 208 (414)
T 3ndn_A 143 ----RWGVQTVFVDGDDLSQWERALS---VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFATP--- 208 (414)
T ss_dssp ----HTTCEEEEECTTCHHHHHHHTS---SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH---
T ss_pred ----HcCcEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 0123456666679999999886 35788888999999999988 999999999999999999999721
Q ss_pred cCccccccCCCcchhhhhhhccC-C-cccccccccHHHHH-HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.......++.+..+.|+||++++ | +++|+++++++.+. .+... ........++..++.+...++.+ +...++
T Consensus 209 ~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~---~~~~g~~~~~~~a~~~~~~l~~l--~~r~~~ 283 (414)
T 3ndn_A 209 LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKL---MRHTGPAMSAFNAWVLLKGLETL--AIRVQH 283 (414)
T ss_dssp HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHH---HHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 11111134555666789999996 7 78999998887665 44311 11112234666666655554433 233455
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEE------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
..++..++.+.|++. +....+ ++.|.+++|++..... .....+.++.+.|
T Consensus 284 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~--------~~~~~~~~~~~~l 351 (414)
T 3ndn_A 284 SNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED--------VAKQRAFEVLDKM 351 (414)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG--------GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc--------ccHHHHHHHHHhC
Confidence 666666666666554 322221 3468899999943100 0034567888888
Q ss_pred HHcCeEeccCCCcc---------------------------eeeecCCCHHHHHHHHHHHHHHH
Q 015230 372 LEEGVYFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 372 ~~~Gi~v~~~~~~~---------------------------~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
...++.+..|+... +|++. ..|+.+.+++.|++++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv--G~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISV--GLEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEEC--CSSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEe--CcCCHHHHHHHHHHhh
Confidence 87788777765332 33333 3466788888888776
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=184.24 Aligned_cols=310 Identities=13% Similarity=0.074 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
+|++++++.++++.+....+......++.+.+++.++.. +.+++++|++|+..+++.+ ...+++.|++..++|++...
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~al~~~l~~l-~~~~gd~Vi~~~~~~~~~~~ 93 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAA-HALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFISSSQ 93 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCccHHHHH
Confidence 489999999999874222234556678888888888644 4555556799999999853 13556789999999987654
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. ....|..+..++.....+.. |++++++.++ +++++|+ |+ +++|.+.+ +++|.++|
T Consensus 94 ~-~~~~g~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~--~~-n~tG~~~~----l~~i~~la 149 (388)
T 1b9h_A 94 A-AQRLGAVTVPVDVDAATYNL-------------DPEAVAAAVT---PRTKVIM--PV-HMAGLMAD----MDALAKIS 149 (388)
T ss_dssp H-HHHTTCEEEEECBCTTTCCB-------------CHHHHHHHCC---TTEEEEC--CB-CGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCCcCCC-------------CHHHHHHhcC---cCceEEE--Ee-CCccCcCC----HHHHHHHH
Confidence 3 33445444443322111111 8999998886 3567666 44 44677777 99999999
Q ss_pred HHhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh--hhccCCcccccccccHH-H--HHHhcCCCC--------c
Q 015230 214 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRD-I--MEMVAPAGP--------M 278 (411)
Q Consensus 214 ~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~~~-~--~~~~~~~~~--------~ 278 (411)
++||++||+||+|+ |+ ..|.. ...++ ..++.||| |+++| .++|+++++++ + ++.+..... .
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 99999999999997 34 32221 12222 34566777 55554 48999987765 5 455421000 0
Q ss_pred c----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-------eeecceEEEEEec
Q 015230 279 Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------GYISGMFGFFFTE 347 (411)
Q Consensus 279 ~----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~g~~~~~~~~~ 347 (411)
+ .+.++..+++.++++...++.+ ++.+++.+++.+++.+.|+++ +..... ...++++++.+..
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSHYMAMFRIPG 299 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCCSEEEEECTT
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccceEEEEEEeCC
Confidence 0 1222345666666655544433 335666777777777777654 222111 1236788887732
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc---------------------------------ceeee--cCC
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------------AGFTS--LAH 392 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~---------------------------------~~~~~--~~~ 392 (411)
. ...+..++.+.|.++||.+.++..+ .+|++ ..+
T Consensus 300 ~-----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 368 (388)
T 1b9h_A 300 L-----------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLL 368 (388)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGG
T ss_pred c-----------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCC
Confidence 1 1124578999999999999765321 14554 356
Q ss_pred -CHHHHHHHHHHHHHHHHh
Q 015230 393 -SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 -t~~~i~~~i~~l~~~~~~ 410 (411)
|++|++++++.|++++++
T Consensus 369 ~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 369 AGEPELHATAEIIADAVAR 387 (388)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 899999999999998875
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=187.56 Aligned_cols=281 Identities=14% Similarity=0.096 Sum_probs=185.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+++....++.+.+++.++..+.++ +++|++|+..+++.+ ..+++.|++..+.|++...........
T Consensus 49 ~~~~~~~~l~~~la~~~~~~~~i~-~~sGt~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~----------- 114 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGAGAVL-TNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKR----------- 114 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTT-----------
T ss_pred CCCccHHHHHHHHHHHhCCCcEEE-eCCHHHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHh-----------
Confidence 345666778888888776444444 566799999999864 456788999999998643322111110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~ 231 (411)
.+..+..++.+|++++++.++. ++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++ ..
T Consensus 115 -----~g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 115 -----GCYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp -----TSCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred -----cCCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1224555666699999999983 5788889999999999988 999999999999999999999866 32
Q ss_pred ccCccccccCCCcchhhhhhhccC-Cccc-ccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
. . . .++.+..+.|++|++++ |.++ |++++++ ++++.+.. .....+...++++++++.+.++.+ ++..+
T Consensus 183 ~-~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 253 (386)
T 1cs1_A 183 N-P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_dssp C-G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred C-c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhcccHH--HHHHH
Confidence 1 1 1 23444445589999984 6776 8888875 77777753 222224557888877776665432 23345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceE------------------EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (411)
+..++.+.+.+.|+++ +.... .++.|.++.+++.+. ...+.+.
T Consensus 254 ~~~~~~~~l~~~l~~~----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 314 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQ----PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---------------EQTLRRF 314 (386)
T ss_dssp HHHHHHHHHHHHHTTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC---------------HHHHHHH
Confidence 5566666666666543 21111 123477888877321 2567788
Q ss_pred HHHcCeEeccC--C----------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 371 MLEEGVYFAPS--Q----------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 371 l~~~Gi~v~~~--~----------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
|.++||++... + .+.+|++ ...++++++.+.+.|+++
T Consensus 315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 88899988741 1 2356774 444566666666666654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-22 Score=190.16 Aligned_cols=315 Identities=16% Similarity=0.128 Sum_probs=202.0
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCC------CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc--cCC----
Q 015230 51 GHADDQVLAALGETMKKGTSFGA------PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--TGR---- 118 (411)
Q Consensus 51 g~~~~~v~~a~~~~l~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~--~~~---- 118 (411)
++.+|++.+++.+.......+.. ..++..++++++++.++-...+++++||++|+..++++++.+ .++
T Consensus 76 ~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~ 155 (474)
T 1wyu_B 76 MKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT 155 (474)
T ss_dssp CCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 35678888888776332222111 125678899999998863335678899999999988776543 122
Q ss_pred -cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 119 -ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 119 -~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
+.|++.. .+|+.+..+....|..+..++.... +.. |+++++++++ +++++|++++.+ ++|
T Consensus 156 r~~Vlv~~-~~h~~~~~~~~~~G~~vv~v~~~~~-~~~-------------d~~~L~~~i~---~~t~~v~~~~pn-~~G 216 (474)
T 1wyu_B 156 RRVVLVPD-SAHGSNPATASMAGYQVREIPSGPE-GEV-------------DLEALKRELG---PHVAALMLTNPN-TLG 216 (474)
T ss_dssp CCEEEEET-TSCTHHHHHHHHTTCEEEEECBCTT-SSB-------------CHHHHHHHCS---TTEEEEEECSSC-TTS
T ss_pred CCEEEEeC-CcChhhHHHHHHCCCEEEEecCCCC-CCc-------------CHHHHHHhhC---CCceEEEEECCC-CCc
Confidence 3677766 5556666666666665555433211 111 8999999886 357888887754 477
Q ss_pred cc-CCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC-----CcccccccccHHHH
Q 015230 198 FI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-----GLPVGAYGGRRDIM 269 (411)
Q Consensus 198 ~~-~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~-----G~~~g~~~~~~~~~ 269 (411)
.+ .+ +++|.++|++||+++|+||+|+....|.. ....++ +|++ +++|+|++ |+++|+++++++++
T Consensus 217 ~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~ 289 (474)
T 1wyu_B 217 LFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA 289 (474)
T ss_dssp CCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG
T ss_pred ccCCC----HHHHHHHHHHcCCEEEEeCchhhhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHHH
Confidence 77 35 99999999999999999999963322211 112233 4654 56899862 36899999998887
Q ss_pred HHhcCC-----C-Cc----------ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 270 EMVAPA-----G-PM----------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 270 ~~~~~~-----~-~~----------~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
+.+... . .. ....++..++++++++.+.++.+.. ++..++..++.+++.+.|+++ .+..
T Consensus 290 ~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~~~ 367 (474)
T 1wyu_B 290 PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GYRV 367 (474)
T ss_dssp GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCBC
T ss_pred HhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcEe
Confidence 766410 0 00 0112344677888888888765433 444777888888888888775 2222
Q ss_pred ceEEeeecce--EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----CcceeeecC--CCHHHHHHHH
Q 015230 331 AICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLA--HSSDDIQHTI 401 (411)
Q Consensus 331 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~~~~--~t~~~i~~~i 401 (411)
. .+.+.+ +++.+ . .......+.+.|.++||.+.... .+.+|+++. +|++++++++
T Consensus 368 ~---~~~~~~~~~~~~~-~------------~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~ 431 (474)
T 1wyu_B 368 P---YDGPSMHEFVAQP-P------------EGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFA 431 (474)
T ss_dssp S---SCSSCCSCEEEBC-S------------TTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHH
T ss_pred c---CCCCcceEEEEEc-C------------CCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHH
Confidence 1 111222 34433 1 01123678999999999863221 245777654 4899999999
Q ss_pred HHHHHHHH
Q 015230 402 TAAEKVLR 409 (411)
Q Consensus 402 ~~l~~~~~ 409 (411)
++|+++++
T Consensus 432 ~~L~~~~~ 439 (474)
T 1wyu_B 432 EAMGALLK 439 (474)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998875
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-22 Score=189.56 Aligned_cols=317 Identities=15% Similarity=0.072 Sum_probs=189.0
Q ss_pred CcHHHHHHHHHHHHcCCCCC--------CCCH--HHHHHH-HHHHhhCCCCCEEEE-eCChHHHHHHHHHHHHhccCCcE
Q 015230 53 ADDQVLAALGETMKKGTSFG--------APCL--LENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~--------~~~~--~~~~l~-~~l~~~~~~~~~v~~-~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.+|++++++.+.+.+....+ +... ..++++ +++++.++ .+.+.+ ++||++|++.+++.+ ..+++.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g-~~~~~v~~~sGs~a~~~a~~~~--~~~Gd~ 133 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG-AEFANVQPHSGAQANAAVLHAL--MSPGER 133 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC-CCceEEEeCCHHHHHHHHHHHh--cCCCCE
Confidence 59999999998886421111 1111 225566 78888774 444555 889999999999853 446788
Q ss_pred EEEEeCCcCCCchhh--hhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE-cccCCCC
Q 015230 121 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNS 196 (411)
Q Consensus 121 vi~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~-~~~~~~~ 196 (411)
|++.+++|++..... ....|......+.+.. ... ..|++++++.++.. +++++++ .|+++++
T Consensus 134 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~ 199 (447)
T 3h7f_A 134 LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATH------------LIDMDAVRATALEF--RPKVIIAGWSAYPRV 199 (447)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTC------------SCCHHHHHHHHHHH--CCSEEEEECSSCCSC
T ss_pred EEecCcccccccchhhhhhhcCCeeEEEEcCcCcccC------------CcCHHHHHHHHHhc--CCeEEEEcCCCCCCc
Confidence 999999987733211 1222222221111111 000 12899999998643 3446556 4555443
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEeccc-ccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~-~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
+ + +++|+++|++||++||+||+| .|+ ..|..... ..+.+.-+.|+||+++ |+|.|++++++++++.+..
T Consensus 200 ~---~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~ 270 (447)
T 3h7f_A 200 L---D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VPHADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINS 270 (447)
T ss_dssp C---C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEEESSGGGC-CCSCEEEEECGGGHHHHHH
T ss_pred c---C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CCCCcEEEecCCcCCC-CCCeEEEEECHHHHHHHhh
Confidence 3 4 999999999999999999998 465 44432111 0112222447899995 6789999998887776653
Q ss_pred CCCcccccCCC-CCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe--eecceEEEEEecC
Q 015230 275 AGPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEG 348 (411)
Q Consensus 275 ~~~~~~~~t~~-~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~~ 348 (411)
. ....+++ .+...++++.+++..... ++.++++.++.+++.+.|++.....+...... ..+.++++++...
T Consensus 271 ~---~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (447)
T 3h7f_A 271 A---VFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDS 347 (447)
T ss_dssp H---HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTS
T ss_pred h---cCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCC
Confidence 1 1111222 233334444445544332 45667788888888888876521111111111 2355777776432
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEec----cC------CCcceeee------cCCCHHHHHHHHHHHHHHHHh
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS------QFEAGFTS------LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~------~~~~~~~~------~~~t~~~i~~~i~~l~~~~~~ 410 (411)
. .....+.+.|.++||++. ++ ....+|+. ..++++++++++++|.+++++
T Consensus 348 ~------------~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 348 P------------LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp S------------CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred C------------CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 1 112566777778899998 43 12236663 237899999999999998764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=185.16 Aligned_cols=308 Identities=13% Similarity=0.082 Sum_probs=195.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHh-ccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-FTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~-~~~~~~vi~~~~~~~~~ 131 (411)
.+|++++++.+.++... .++.....++.+.+++.++ .+++++++||++|+..+++.+.. ..+++.|++..++|++.
T Consensus 11 ~~~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~-~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~ 87 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ--LTQGKRSLLFEEALCEFLG-VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT 87 (375)
T ss_dssp CCHHHHHHHHHHHTSSC--CSSSHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH
T ss_pred CCHHHHHHHHHHHHcCc--ccCChHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhH
Confidence 68999999999998642 2345666788888888774 44999999999999999985411 34567899999999875
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
... ....|..+..++......+ |++++++.++ +++++|++.+. +|.+.+ +++|.+
T Consensus 88 ~~~-~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~i~---~~~~~v~~~~~---tG~~~~----l~~i~~ 142 (375)
T 2fnu_A 88 ANM-LLESGYTPVFAGIKNDGNI--------------DELALEKLIN---ERTKAIVSVDY---AGKSVE----VESVQK 142 (375)
T ss_dssp HHH-HHHTTCEEEECCBCTTSSB--------------CGGGSGGGCC---TTEEEEEEECG---GGCCCC----HHHHHH
T ss_pred HHH-HHHCCCEEEEeccCCCCCC--------------CHHHHHhhcC---cCceEEEEeCC---cCCccC----HHHHHH
Confidence 543 3334544444332111111 7788877765 35666554433 788877 999999
Q ss_pred HHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhh--hhccCCcccccccc-c-HHHHHHhcCCCCcc-------
Q 015230 212 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG-R-RDIMEMVAPAGPMY------- 279 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~-~-~~~~~~~~~~~~~~------- 279 (411)
+|++||+++|+||+|+.. .... .....++ +.++.|+| |++++| +|++++ + +++++.+.......
T Consensus 143 l~~~~~~~li~D~a~~~~~~~~~-~~~~~~~-~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEYQN-KKVGGFA-LASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFF 218 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEETT-EETTSSS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESSSS
T ss_pred HHHHcCCEEEEECccccCCeECC-eeccccC-CeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCcccccc
Confidence 999999999999999733 1111 0111112 24556888 999754 788766 3 66766554211100
Q ss_pred ------cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe------eecceEEEEEec
Q 015230 280 ------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG------YISGMFGFFFTE 347 (411)
Q Consensus 280 ------~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~g~~~~~~~~~ 347 (411)
.+.++..+++.++++...++.+ ++..++.+++.+++.+.|+++ +...... ..+.++++.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
T 2fnu_A 219 EGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNHLYPILMHQ 292 (375)
T ss_dssp CEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCSCEEEEECG
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCCcceEEEEEEeCc
Confidence 1112355666666655443322 455667777777777777653 2111111 123445666632
Q ss_pred CCCCCcchhcccchH-HHHHHHHHHHHcCeEeccCC-----------------C--------cceeeec--CCCHHHHHH
Q 015230 348 GPVYNFEDAKKSETT-KFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTSL--AHSSDDIQH 399 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gi~v~~~~-----------------~--------~~~~~~~--~~t~~~i~~ 399 (411)
. .. +...+.+.|.++||.+.... . ..+|+++ .+|++++++
T Consensus 293 ~------------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~ 360 (375)
T 2fnu_A 293 K------------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQN 360 (375)
T ss_dssp G------------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHH
T ss_pred c------------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHH
Confidence 1 11 34678999999999998321 0 2477754 459999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|++++++
T Consensus 361 ~~~~l~~~~~~ 371 (375)
T 2fnu_A 361 IAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=183.61 Aligned_cols=322 Identities=15% Similarity=0.060 Sum_probs=198.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
-+|++++++.+.++.+ +.. ......++.+.+++.+ +.+++++++||++|+..+++.+ ...+++.|++..++|++.
T Consensus 10 ~~~~v~~a~~~~~~~~--~~~~~g~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~l-~~~~gd~Vl~~~~~~~~~ 85 (394)
T 1o69_A 10 MGGNELKYIEEVFKSN--YIAPLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIAS 85 (394)
T ss_dssp --CCHHHHHHHHHHHT--TTSCTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGG
T ss_pred CCHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHc-CCCCCCEEEECCCccHHH
Confidence 3567889998888763 221 1244566777777666 4589999999999999999853 145667899999999976
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
..... ..|..+..++.. .... .|++++++.++..++++++|++++ ++|...+ +++|.+
T Consensus 86 ~~~~~-~~g~~~~~v~~~--~~~~------------~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~ 143 (394)
T 1o69_A 86 VAPIC-YLKAKPVFIDCD--ETYN------------IDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVE 143 (394)
T ss_dssp THHHH-HTTCEEEEECBC--TTSS------------BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHH
T ss_pred HHHHH-HcCCEEEEEEeC--CCCC------------cCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHH
Confidence 54443 345444443322 1110 189999999985322467777765 4566666 999999
Q ss_pred HHHHhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh--hhccCCccccccccc-HHHHHHhcCCCCccc------
Q 015230 212 ITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPMYQ------ 280 (411)
Q Consensus 212 l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~-~~~~~~~~~~~~~~~------ 280 (411)
+|++||+++|+||+|+ |+ ..+.... .+ ..+|+.++| |.++ |.++|+++++ +++++.+........
T Consensus 144 l~~~~~~~li~Dea~~~g~~~~~~~~~--~~-~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~ 219 (394)
T 1o69_A 144 ICKENDIVLIEDAAEALGSFYKNKALG--TF-GEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHY 219 (394)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTEETT--SS-SSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSC
T ss_pred HHHHcCCEEEEECcCcccceeCCcccc--cc-cCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCccc
Confidence 9999999999999998 66 4332110 11 136777774 6555 4589999885 787776643111110
Q ss_pred -----ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-eEEEEEecCC-----
Q 015230 281 -----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGP----- 349 (411)
Q Consensus 281 -----~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~----- 349 (411)
+..+..+++.++.+...++.+ ++.+++.+++.+++.+.|+++ .+..........++ ++++.+....
T Consensus 220 ~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 296 (394)
T 1o69_A 220 EHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNA 296 (394)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCC
T ss_pred cccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccc
Confidence 011124566666665544433 336677888888888888765 21111100001122 4566653110
Q ss_pred -----CCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc------------------------eee--ecCCCHHHHH
Q 015230 350 -----VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA------------------------GFT--SLAHSSDDIQ 398 (411)
Q Consensus 350 -----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~------------------------~~~--~~~~t~~~i~ 398 (411)
...+.. ........++.+.|.++||.++++..+. +++ ...+|++|++
T Consensus 297 ~~~~~~~~~~~--~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~ 374 (394)
T 1o69_A 297 CQKDINISQKN--ITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY 374 (394)
T ss_dssp CCEEEECCCCC--CCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred ccccccccccc--cccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence 000000 0001245789999999999998873220 111 2347999999
Q ss_pred HHHHHHHHHHH
Q 015230 399 HTITAAEKVLR 409 (411)
Q Consensus 399 ~~i~~l~~~~~ 409 (411)
+++++|++++.
T Consensus 375 ~~~~~l~~~~~ 385 (394)
T 1o69_A 375 EISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=194.81 Aligned_cols=286 Identities=11% Similarity=0.089 Sum_probs=185.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++++++++.++ .++++++++|++|+..+++ ...+++.|++.++.|++........
T Consensus 131 g~~~~~~l~~~la~~~g-~~~~i~~~sGt~al~~~l~---~~~~Gd~Vi~~~~~y~~~~~~~~~~--------------- 191 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDK-ADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQV--------------- 191 (464)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHT---------------
T ss_pred CCHHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHH---HhCCCCEEEEECCCchhHHHHHHHH---------------
Confidence 35678899999999885 4588888999999988775 4456788999999988643211000
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
....+..+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+. |.
T Consensus 192 -~~~~G~~v~~v~~~d~~~l~~~i~---~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~---g~ 260 (464)
T 1ibj_A 192 -VPRSGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS---PV 260 (464)
T ss_dssp -SGGGTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC---TT
T ss_pred -HHHcCCEEEEeCCCCHHHHHHHhc---cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc---cc
Confidence 011123455566668999998886 46899999999999999887 99999999999999999999972 21
Q ss_pred Cc-cccccCCCcchhhhhhhccC--Cccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 234 GG-AQEYFGVTPDLTTLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 234 ~~-~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.. ..+ ++.+.-+.++||++++ |+++|+++++ +++++.+.. .......+.++++++++.++++.+.. ..++
T Consensus 261 ~~~~~~-~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~---~~~~~g~~~~~~~~~a~~~al~~~~~--r~~~ 334 (464)
T 1ibj_A 261 LSRPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF---LQNSEGSGLAPFDCWLCLRGIKTMAL--RIEK 334 (464)
T ss_dssp TCCGGG-TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---HHHHTTCBCCHHHHHHHHHHHTTHHH--HHHH
T ss_pred cCChhh-cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH---HHHhcCCCCCHHHHHHHHhchhhHHH--HHHH
Confidence 11 111 2333334489999985 7899999887 477776652 11112344577888777776643211 1122
Q ss_pred HHHHHHHHHHHHHHHH----------HhcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 310 LNKITGELTQGIIDAG----------KKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~----------~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
..++...+.+.+++.. ..++... ..++.|.++++++.+ ......+.+.|...|
T Consensus 335 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~-------------~~~~~~~~~~L~~~g 401 (464)
T 1ibj_A 335 QQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS-------------VALSKHLVETTKYFS 401 (464)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC-------------HHHHHHHHHHCSSSE
T ss_pred HHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC-------------HHHHHHHHHhcCcce
Confidence 2222233333333210 0111100 112357788888721 122345777777778
Q ss_pred eEeccCC---------------------------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 376 VYFAPSQ---------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 376 i~v~~~~---------------------------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|.+..+. ...+|++... +++++++++|++++++
T Consensus 402 i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 402 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence 8776653 2347887666 8999999999999875
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=184.64 Aligned_cols=307 Identities=12% Similarity=0.052 Sum_probs=193.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 132 (411)
.++++++++.+.++.+ .|........++.+.+++.+ +.+++++|+||++|+..+++.+ ..++.|++.+++|++..
T Consensus 30 ~p~~~~~a~~~~~~~~-~y~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~l~~l---~~gd~Vlv~~~~~~~~~ 104 (424)
T 2po3_A 30 DRARLYERLDRALDSQ-WLSNGGPLVREFEERVAGLA-GVRHAVATCNATAGLQLLAHAA---GLTGEVIMPSMTFAATP 104 (424)
T ss_dssp CHHHHHHHHHHHHHHT-CCSSSCHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHH---TCCSEEEEESSSCTHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc---CCCCEEEECCCccHHHH
Confidence 4788999999988764 23221356677777777777 4579999999999999999864 24588999999998755
Q ss_pred hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 133 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
. .....|..+..++.... +.. -|++++++.++ +++++|++++ ++|...+ +++|.++
T Consensus 105 ~-~~~~~G~~~~~v~~~~~-~~~------------~d~~~l~~~i~---~~~~~v~~~~---~tG~~~~----l~~i~~l 160 (424)
T 2po3_A 105 H-ALRWIGLTPVFADIDPD-TGN------------LDPDQVAAAVT---PRTSAVVGVH---LWGRPCA----ADQLRKV 160 (424)
T ss_dssp H-HHHHTTCEEEEECBCTT-TSS------------BCHHHHGGGCC---TTEEEEEEEC---GGGCCCC----HHHHHHH
T ss_pred H-HHHHcCCEEEEEecCCC-cCC------------cCHHHHHHhhC---cCCcEEEEEC---CCCCcCC----HHHHHHH
Confidence 4 33444554444332211 110 07888887775 3577777643 4676666 9999999
Q ss_pred HHHhCCEEEEecccc-cc-ccccCccccccCCCcch--hhhh--hhccCCccccccccc-HHHHHHhcCCCCc-------
Q 015230 213 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL--TTLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPM------- 278 (411)
Q Consensus 213 ~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~--~~~s--K~~~~G~~~g~~~~~-~~~~~~~~~~~~~------- 278 (411)
|++||++||+||+|+ |+ ..+.. .+..+|+ .||| |++++ +++|+++++ +++++.+......
T Consensus 161 a~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~ 234 (424)
T 2po3_A 161 ADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPGG 234 (424)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTTC
T ss_pred HHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 999999999999998 66 43321 1112354 4676 66654 789999888 7877766421110
Q ss_pred --ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eec-----ceEEEEEecCCC
Q 015230 279 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YIS-----GMFGFFFTEGPV 350 (411)
Q Consensus 279 --~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g-----~~~~~~~~~~~~ 350 (411)
..+.++..++++++++...++.+ ++..++.+++.+++.+.|+++ +...... ..| .++++.+.+..
T Consensus 235 ~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~i~~~~~~- 307 (424)
T 2po3_A 235 SPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL----PGVLVADHDRHGLNNHQYVIVEIDEAT- 307 (424)
T ss_dssp CTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC----TTEEECCGGGGSCCCCCCEEEEECHHH-
T ss_pred ccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCccccCCCCCCccccEEEEEEECCcc-
Confidence 01112244566666666554433 234555555555665555432 2221111 111 34445553100
Q ss_pred CCcchhcccchHHHHHHHHHHHHcCeEeccCCC-c-----------------c-------eeee--cCCCHHHHHHHHHH
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------A-------GFTS--LAHSSDDIQHTITA 403 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~-----------------~-------~~~~--~~~t~~~i~~~i~~ 403 (411)
...+..++.+.|.++||.+.+... + . ++++ ..+|++++++++++
T Consensus 308 ---------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~ 378 (424)
T 2po3_A 308 ---------TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADL 378 (424)
T ss_dssp ---------HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHH
T ss_pred ---------chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHH
Confidence 011236788899999999987321 1 0 5565 77899999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|.+++++
T Consensus 379 L~~~~~~ 385 (424)
T 2po3_A 379 LRLCATR 385 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988754
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=183.74 Aligned_cols=283 Identities=13% Similarity=0.012 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDS 151 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 151 (411)
....+++.+.+++.++ .+++++++||++|+..+++.. ..+++.|++.++.|++.... .....|.
T Consensus 61 ~~~~~~l~~~ia~~~g-~~~~i~~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---------- 127 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEK-TEACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFGI---------- 127 (404)
T ss_dssp CHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------
T ss_pred ChHHHHHHHHHHHHhC-CCcEEEeCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcCC----------
Confidence 4555677777777774 458888999999999999743 34567899999998864332 1222222
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-hCCEEEEeccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFR 230 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-~~~~li~De~~~g~~ 230 (411)
.+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+++.
T Consensus 128 ---------~~~~v~~~d~~~l~~~i~---~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 128 ---------QVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp ---------EEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred ---------EEEEECCCCHHHHHHhcC---CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 345555557888888876 36888889888888898887 9999999999 999999999998651
Q ss_pred cccCccccccCCCcchhhhhhhcc-CCccc-ccccccHHHHH-HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 231 LAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 231 ~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~-g~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
.... . .++.+..+.|+||+++ +|+|+ |++++++++++ .+......+. ....++++++++.++++.+ +...
T Consensus 192 ~~~~--~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~--g~~~~~~~~~~~~~~l~~~--~~~~ 264 (404)
T 1e5e_A 192 ITNP--V-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDIT--GSVISPHDAWLITRGLSTL--NIRM 264 (404)
T ss_dssp TCCG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCC--CCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred hCCc--c-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHhHhHH--HHHH
Confidence 1111 1 1344444558999999 48997 99999998887 7764322110 2456788888877776532 2234
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCc------e----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH
Q 015230 308 EYLNKITGELTQGIIDAG----KKAGHA------I----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~----~~~~~~------~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 373 (411)
++..++...+.+.+++.. ..++.. . ..++.|.++.+++.+ . .....+.+.+
T Consensus 265 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------------~--~~~~~~~l~~ 329 (404)
T 1e5e_A 265 KAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-------------G--FEGAKKLLDN 329 (404)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-------------H--HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-------------C--HHHHHHHHHh
Confidence 445555555555555431 000100 0 012347777777732 1 1345566677
Q ss_pred cCeEeccC--C----------------------------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 374 EGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 374 ~Gi~v~~~--~----------------------------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.||++... + .+.+|+++.. ++++++++.|+++++.
T Consensus 330 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 330 LKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDA 394 (404)
T ss_dssp CSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHH
Confidence 78854331 1 2457887766 8899999999888764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=183.50 Aligned_cols=282 Identities=16% Similarity=0.101 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhh---hhhcCCCCcccCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 149 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~ 149 (411)
+..+...++.+++++.++. +++++++||++|+..+++.+ ..+++.|++..+.|++..... ....|.
T Consensus 56 ~~~~~~~~l~~~la~~~g~-~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~-------- 124 (389)
T 3acz_A 56 LGNPTVEQFEEMVCSIEGA-AGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDTLYGCTVSLFTHWLPRFGI-------- 124 (389)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHTTT--CCTTCEEEEESSCCHHHHHHHHHHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhCC-CeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC--------
Confidence 3467778899999888853 47788888999999998743 456788999999998754432 122222
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
.+..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++
T Consensus 125 -----------~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~ 186 (389)
T 3acz_A 125 -----------EVDLIDTSDVEKVKAAWK---PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP 186 (389)
T ss_dssp -----------EEEEECTTCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT
T ss_pred -----------EEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 344455568999988876 36889999999999999998 999999999999999999999844
Q ss_pred ccccCccccccCCCcchh--hhhhhccC-Cccc-ccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC
Q 015230 230 RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~-g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~ 304 (411)
..+.. .+..+|++ |++|++++ |.|+ |++++++ ++++.+... ......+.++..++++.+.++.+ +
T Consensus 187 ~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~---~~~~g~~~~~~~~~~~~~~l~~l--~ 256 (389)
T 3acz_A 187 CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFY---RKDAGSLMAPMDAFLCARGMKTL--P 256 (389)
T ss_dssp TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHH---HHhcCCCCCHHHHHHHHcCccHH--H
Confidence 11111 12345655 89999995 7887 9998888 888777531 11113345777777777666533 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH----------hcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH
Q 015230 305 GTYEYLNKITGELTQGIIDAGK----------KAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (411)
...++..++...+.+.|++... .++... ..++.|.++.|++.+ ...+.+.
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~----------------~~~~~~~ 320 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS----------------FEAAKKL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC----------------HHHHHHH
Confidence 2334555566666666655310 000000 012347788887731 1455666
Q ss_pred HHHcCeEeccC--C----------------------------CcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 371 MLEEGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 371 l~~~Gi~v~~~--~----------------------------~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.+.|+++... + .+.+|++... ++.+.+++.|.++++++
T Consensus 321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--~~~~~li~~l~~al~~~ 389 (389)
T 3acz_A 321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI--ENVDDIIADLKQALELW 389 (389)
T ss_dssp HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHTCC
T ss_pred HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHhhC
Confidence 77778877552 1 1345665444 37888888888887653
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-22 Score=188.11 Aligned_cols=312 Identities=11% Similarity=0.052 Sum_probs=181.4
Q ss_pred CcHHHHHHHHHHHHcCC--CCC------C--CCHHHH-HHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 53 ADDQVLAALGETMKKGT--SFG------A--PCLLEN-VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~--~~~------~--~~~~~~-~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.||++++++.+++.+.. .+. . ..+..+ ...+++++.++ ..+.+ ++++|++|+..+++.+ ..+++.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~--~~~gd~ 118 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTAL--LQPGDT 118 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHh--cCCCCE
Confidence 69999999999885422 111 0 112333 34467777776 33444 3466799999998753 446678
Q ss_pred EEEEeCCcCCCchhhh--hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 121 IIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 121 vi~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
|++..+.|++...... ...|..+...+.+..... ..|+++++++++++ ++++|++++.++ |.
T Consensus 119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~ 182 (420)
T 3gbx_A 119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESG------------KIDYDEMAKLAKEH--KPKMIIGGFSAY--SG 182 (420)
T ss_dssp EEEEEEC------------CHHHHSEEEEEEECTTC------------SCCHHHHHHHHHHH--CCSEEEECCTTC--CS
T ss_pred EEecchhhcceeccchhhhhcccceeEEeccCCccC------------CcCHHHHHHHHHhc--CCeEEEEecCcc--CC
Confidence 8888777765321111 111211111111100100 12899999999853 466777754222 34
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCcccccccccH---HHHHH
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRR---DIMEM 271 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~---~~~~~ 271 (411)
..+ +++|+++|++||++||+||+|+ |+ +.+..... .. .+|++ |+||+++ |.+.|++++++ ++.+.
T Consensus 183 ~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~ 254 (420)
T 3gbx_A 183 VVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKK 254 (420)
T ss_dssp CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHH
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHH
Confidence 555 9999999999999999999985 55 44432211 11 25665 5889997 44568888876 67666
Q ss_pred hcCCCCcccccCC-CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEe
Q 015230 272 VAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFT 346 (411)
Q Consensus 272 ~~~~~~~~~~~t~-~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~ 346 (411)
+.. .....+. +.+...+++...++..... ++++++++++.+++.+.|++. ++..... ..+.++++.+.
T Consensus 255 ~~~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~ 327 (420)
T 3gbx_A 255 LNS---AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFLLDLV 327 (420)
T ss_dssp HHH---HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG
T ss_pred hhh---hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEEEEcC
Confidence 652 1122122 2333333333334433322 456777888888888888763 3221111 34667788764
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEecc-------CC---Ccceeeec------CCCHHHHHHHHHHHHHHHHh
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-------SQ---FEAGFTSL------AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-------~~---~~~~~~~~------~~t~~~i~~~i~~l~~~~~~ 410 (411)
... .....+.+.|.++||.+.+ +. ...+|+.. ..+++++++++++|++++++
T Consensus 328 ~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 328 DKN------------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp GGT------------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCC------------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 311 1236788888899999988 21 12377742 25789999999999998764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-21 Score=186.70 Aligned_cols=328 Identities=14% Similarity=0.043 Sum_probs=195.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHhhCC-CC-CEEEEeCChHHHHHHHHHHHHhc----------
Q 015230 53 ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAF---------- 115 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~~a~~~al~~~~~~---------- 115 (411)
.++.+.+++.....+.....+ ..++++++.+++++.++ +. +.++||+||++|+..+++.++..
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~ 191 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSI 191 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccch
Confidence 467777777665544221111 24556778889999997 33 79999999999999999876421
Q ss_pred --cC-----CcEEEEEeCCcCCCchhhhhhcCC---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CC
Q 015230 116 --TG-----RERIIKFEGCYHGHADPFLVKAGS---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KG 182 (411)
Q Consensus 116 --~~-----~~~vi~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~ 182 (411)
.+ ++.+|+.+...|.....++...|. .+..++......+ |+++|++.+++. ..
T Consensus 192 ~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~--------------d~~~L~~~i~~~~~~~~ 257 (497)
T 2qma_A 192 QKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTM--------------DITKLDEVIAQAKAEGL 257 (497)
T ss_dssp HHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSB--------------CGGGHHHHHHHHHHTTC
T ss_pred hhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcC--------------CHHHHHHHHHHHHHCCC
Confidence 11 232444444445444444444443 2333332211111 788899888742 11
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCcc
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLP 258 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~ 258 (411)
++.+|+++..++++|.+.+ +++|.++|++||+++++|++|+++ .... +.....++ .+|++ +++|+++++++
T Consensus 258 ~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~ 332 (497)
T 2qma_A 258 IPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTIS 332 (497)
T ss_dssp EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSS
T ss_pred cceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcc
Confidence 2457777777777888888 999999999999999999999877 4433 22222344 46765 45999997778
Q ss_pred ccccccc-HHHHHHhcCCCCcccc-cCCCCCHHHH----------HHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH
Q 015230 259 VGAYGGR-RDIMEMVAPAGPMYQA-GTLSGNPLAM----------TAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 259 ~g~~~~~-~~~~~~~~~~~~~~~~-~t~~~~~~~~----------a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~ 323 (411)
+|+++.+ +..++.+.....+... .+...++... ....++++.+.. +++.++..++.+++.+.|++
T Consensus 333 ~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 412 (497)
T 2qma_A 333 CGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT 412 (497)
T ss_dssp CEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998765 4434444321111111 0101111111 111223333322 45666777777888777775
Q ss_pred HHHhcCCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----CCcceeee---cCCCHH
Q 015230 324 AGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFTS---LAHSSD 395 (411)
Q Consensus 324 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~~~~~~~~---~~~t~~ 395 (411)
+ +.... ....+.+++|.+..... .......++.+.+.++|+.+.+. +...+|++ ..+|++
T Consensus 413 ~----~~~~~~~~~~~~~v~f~~~~~~~--------~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~e 480 (497)
T 2qma_A 413 N----DQFELLAEPSLSTVLFRATHETA--------DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTS 480 (497)
T ss_dssp C----TTEEECSCCSSSEEEEEECCSSS--------CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred C----CCeEEEcCCCceEEEEEEcCCcc--------CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHH
Confidence 4 22111 12345677777743210 01122356788899999988653 22356764 478999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++++++++|+++++++
T Consensus 481 di~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 481 DFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=182.37 Aligned_cols=286 Identities=15% Similarity=0.065 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+..+...++.+.+++.++. ++.++++||++|+..+++.+ ..+++.|++..+.|++..........
T Consensus 62 ~~~~~~~~l~~~la~~~g~-~~~i~~~sG~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~------------ 126 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGG-EAGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIG------------ 126 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGG------------
T ss_pred CCChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHH------------
Confidence 3567788899999888853 47788888999999999854 34667899999999875443311100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
..+..+..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+.+..+
T Consensus 127 ----~~g~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~ 195 (398)
T 1gc0_A 127 ----EFGVKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPYLQ 195 (398)
T ss_dssp ----GGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred ----HcCCEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 0112344455568999998886 36899999999999999988 999999999999999999999744112
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHH-HhcCCCCcccc-cCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~-~~~~~~~~~~~-~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
... .++.+..+.|++|++++ |.|+ |+++++++.++ .+.. .... .+.+.++++++++.++++.+ +...+
T Consensus 196 ~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 196 RPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ---GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp CGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT---HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred Cch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH---HhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 111 23455556699999995 7887 88888887665 4542 1122 24567888888877776533 33455
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCC---------ce-EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc
Q 015230 309 YLNKITGELTQGIIDAGK----KAGH---------AI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~----~~~~---------~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 374 (411)
+..++.+.+.+.|+++.. .++. .. ..++.|.++.|++.. . .....+.+.+.
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------------~--~~~~~~~l~~~ 332 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-------------G--IGAGRRFMNAL 332 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-------------H--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-------------C--HHHHHHHHHhC
Confidence 666677777777765310 0000 00 012457788887732 1 13456666777
Q ss_pred CeEecc---CC---------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 375 GVYFAP---SQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 375 Gi~v~~---~~---------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
|+.+.. ++ ...+|++ ...++++++.+.++|+++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 776643 21 1346664 555777788888777654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-21 Score=180.27 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=189.9
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeC
Q 015230 48 AIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 126 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~ 126 (411)
..+++.+++..+++.+ ...+..|+ ......+++.+++++.++ .+++++++||++|+..+++.+ ..+++.|++..+
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g-~~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~~ 103 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEG-ALEAVVLASGQAATFAALLAL--LRPGDEVVAAKG 103 (412)
T ss_dssp SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETT
T ss_pred ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 4677866665555444 12221222 234667888888888884 458999999999999999853 446678999999
Q ss_pred CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
.|++.......... ..+..+..++. |++++++.++ +++++|++++++|++|.+.+ +
T Consensus 104 ~~~~~~~~~~~~~~----------------~~g~~~~~~~~-~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l 159 (412)
T 2cb1_A 104 LFGQTIGLFGQVLS----------------LMGVTVRYVDP-EPEAVREALS---AKTRAVFVETVANPALLVPD----L 159 (412)
T ss_dssp CCHHHHHHHHHTTT----------------TTTCEEEEECS-SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----H
T ss_pred CchhHHHHHHHHHH----------------HcCCEEEEECC-CHHHHHHHhc---cCCeEEEEeCCCCCCccccc----H
Confidence 88764333211000 01223444444 4888888876 36889999999999999988 9
Q ss_pred HHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh--hhhhhccC-CcccccccccH----------------
Q 015230 207 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRR---------------- 266 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~~---------------- 266 (411)
++|.++|++||+++|+||+|+++ .... .....+|++ |++|++++ |.|+|+++..+
T Consensus 160 ~~i~~l~~~~~~~li~D~~~~~~~~~~~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 160 EALATLAEEAGVALVVDNTFGAAGALCR-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHHHTCEEEEECGGGTTTTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHHHcCCEEEEECCCccccccCC-----ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 99999999999999999999843 1111 112345554 69999984 78999886433
Q ss_pred ------------HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 267 ------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 267 ------------~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
++.+.++... ........++..++.+...++.+ ++..++..++.+++.+.|++. +....+
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~~--~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v 306 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTLG--LSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKAL 306 (412)
T ss_dssp -----HHHHGGGHHHHHHHHHH--TTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEE
T ss_pred cccchhhccchHHHHHHHHHHH--HHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEE
Confidence 3333333110 01112245677666666555443 233455566777777777653 222212
Q ss_pred ------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------------
Q 015230 335 ------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------- 382 (411)
Q Consensus 335 ------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------------- 382 (411)
++.|.++.|.+ .. .+.+.+.+.+.||.+ .++
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~---------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-GD---------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS---------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-CC---------------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 24567888877 31 145677777889998 541
Q ss_pred ----------------Ccceee--ecCCCHHHHHHHHHHHHH
Q 015230 383 ----------------FEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 383 ----------------~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
...+|+ ....++++++.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 123455 355577777777777753
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-22 Score=185.78 Aligned_cols=258 Identities=14% Similarity=0.088 Sum_probs=173.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh-cCCCCcccCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDS 151 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 151 (411)
+......++.+.+++..+ .+++++++||++|++.++. ...+++.|++..+.|++........ ..
T Consensus 64 ~~~p~~~~l~~~la~l~g-~~~~~~~~sG~~Ai~~~~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~~~----------- 128 (400)
T 3nmy_A 64 THNPTRFAYERCVAALEG-GTRAFAFASGMAATSTVME---LLDAGSHVVAMDDLYGGTFRLFERVRRR----------- 128 (400)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTHHH-----------
T ss_pred CCCHHHHHHHHHHHHHhC-CCCEEEecCHHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHhhHh-----------
Confidence 456777888888888875 4578888899999998543 3456778999999998654443222 00
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~ 231 (411)
..+..+..++.+|+++++++++ +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+....
T Consensus 129 -----~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~~~~ 196 (400)
T 3nmy_A 129 -----TAGLDFSFVDLTDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFASPML 196 (400)
T ss_dssp -----HHCCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred -----hcCeEEEEECCCCHHHHHHHhc---cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 0122455566679999998886 46899999999999999998 99999999999999999999972211
Q ss_pred ccCccccccCCCcchhhhhhhccC-Cccccc--c-cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG-GLPVGA--Y-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~-G~~~g~--~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
... ..++.++.+.|++|+++| |.++|+ + ..++++++.+.. .....+...+++.++.+...++.+ +...
T Consensus 197 ~~~---~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~l~~l~~l--~~r~ 268 (400)
T 3nmy_A 197 QRP---LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF---LQNSIGGVQGPFDSFLALRGLKTL--PLRM 268 (400)
T ss_dssp CCG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH---HHHHHCCBCCHHHHHHHHHHHTTH--HHHH
T ss_pred CCh---hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHhHhHH--HHHH
Confidence 111 123555666789999996 567655 3 447777777652 122335566788877777666543 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEE------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHH
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 369 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (411)
++..++..++.+.|++ ++....+ ++.|.+++|++.. ..+.+.++.+
T Consensus 269 ~~~~~~a~~l~~~L~~----~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~------------~~~~~~~~~~ 332 (400)
T 3nmy_A 269 RAHCENALALAQWLET----HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG------------GFDAAKRFCE 332 (400)
T ss_dssp HHHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC------------cHHHHHHHHH
Confidence 5566666666666654 3444333 5678899999942 1233456666
Q ss_pred HHHHcCeEeccC
Q 015230 370 GMLEEGVYFAPS 381 (411)
Q Consensus 370 ~l~~~Gi~v~~~ 381 (411)
.++-.++.+..+
T Consensus 333 ~l~~~~~~~s~G 344 (400)
T 3nmy_A 333 KTELFTLAESLG 344 (400)
T ss_dssp HCSSSEECSCCC
T ss_pred cCCcceEecCCC
Confidence 665545444444
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-22 Score=185.57 Aligned_cols=306 Identities=16% Similarity=0.075 Sum_probs=189.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
++++++++.+.+.... .+......++.+.+++.+ +.+++++++||++|+..+++.+ ...+++.|++..++|++...
T Consensus 16 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sgt~al~~~l~~l-~~~~gd~Vi~~~~~~~~~~~ 91 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW--FILGDEDKKFEQEFADYC-NVNYCIGCGNGLDALHLILKGY-DIGFGDEVIVPSNTFIATAL 91 (373)
T ss_dssp HHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEETTSCTHHHH
T ss_pred CHHHHHHHHHHHHCCC--ccCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHH
Confidence 4566777777776642 245566677777777777 4569999999999999999853 24567789999999887443
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. +...|..+..++.....+. + |++++++.++ +++++|+ +++++|...+ +++|.++|
T Consensus 92 ~-~~~~g~~~~~~~~~~~~~~----------~---d~~~l~~~l~---~~~~~v~---~~n~~G~~~~----l~~i~~l~ 147 (373)
T 3frk_A 92 A-VSYTGAKPIFVEPDIRTYN----------I---DPSLIESAIT---EKTKAII---AVHLYGQPAD----MDEIKRIA 147 (373)
T ss_dssp H-HHHHSCEEEEECEETTTTE----------E---CGGGTGGGCC---TTEEEEE---EECCTTCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEeccccccC----------c---CHHHHHHhcC---CCCeEEE---EECCCcCccc----HHHHHHHH
Confidence 3 4444554443322111110 0 7788887775 3677777 3346787777 99999999
Q ss_pred HHhCCEEEEeccccccccccCccccccCCCcchhhhh----hhccC-Cccccccccc-HHHHHHhcC---CC------Cc
Q 015230 214 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAP---AG------PM 278 (411)
Q Consensus 214 ~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s----K~~~~-G~~~g~~~~~-~~~~~~~~~---~~------~~ 278 (411)
++||+++|+||+|+. |..+....++..+|++++| |++++ | +.|+++++ +++.+.+.. .. ..
T Consensus 148 ~~~~~~li~D~a~~~---g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 223 (373)
T 3frk_A 148 KKYNLKLIEDAAQAH---GSLYKGMKVGSLGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHI 223 (373)
T ss_dssp HHHTCEEEEECTTCT---TCEETTEETTSSSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCC
T ss_pred HHcCCEEEEECCccc---CCEECCEeccccccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccc
Confidence 999999999999972 1112222334345776555 99976 5 37777664 455554431 10 01
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhc
Q 015230 279 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAK 357 (411)
Q Consensus 279 ~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 357 (411)
..+.++..++++++.+...++.+ ++..++.+++.+++++.|+++. ........ ....+..+.+..
T Consensus 224 ~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~---------- 289 (373)
T 3frk_A 224 YKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWYTFVIRS---------- 289 (373)
T ss_dssp SCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCSSEEEEE----------
T ss_pred cccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeEEEEEEe----------
Confidence 11234456777777766555433 3456667777777777665542 11110000 112222222211
Q ss_pred ccchHHHHHHHHHHHHcCeEeccCCC---------------------------cceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 358 KSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 358 ~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
+ +...+.+.|.++||.+.+... ..+|++ ..+|++|++++++.|+++.
T Consensus 290 -~---~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 290 -E---KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp -S---SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred -C---CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1 236899999999999986531 125664 5779999999999998754
Q ss_pred H
Q 015230 409 R 409 (411)
Q Consensus 409 ~ 409 (411)
.
T Consensus 366 ~ 366 (373)
T 3frk_A 366 L 366 (373)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=183.37 Aligned_cols=304 Identities=12% Similarity=0.033 Sum_probs=198.1
Q ss_pred CcHHHHHHHHHHHHcCC-CCCC-C---CHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 53 ADDQVLAALGETMKKGT-SFGA-P---CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~-~~~~-~---~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.++++++++.+++.+.. .+.. . .+..+++.+++++.++ ..+++++|+||++|+..+++. +.++ ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~---l~~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQN---CVEK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHH---HCSS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHh---ccCC-cEEEEc
Confidence 57889999988887743 1211 2 2456788888888886 367899999999999999984 3344 767777
Q ss_pred CCcCCCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 126 GCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 126 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.++++.... .....|..+..++......+ |+++++ + .+++++|++++++|++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~--~---~~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGREAYKEEAAFGKGF--------------YPADIT--V---PADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCCC--------------CGGGCC--C---CTTCCEEEEESEETTTTEECC---
T ss_pred CcHHHHHHHHHHHHhCCCeEEEecCCCCCC--------------CHHHHh--c---cCCccEEEEEcCCCCcceeCC---
Confidence 766652211 22233444444332211111 667766 2 246788888888888999988
Q ss_pred HHHHHHHHHHHh-CCEEEEeccccccccccCccccccCCCcch--hhhhhhccCCcccccccccHHHHHHhcCCCC----
Q 015230 205 FLNAIRRITKEN-GALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP---- 277 (411)
Q Consensus 205 ~l~~i~~l~~~~-~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~---- 277 (411)
+++|.++|++| |+++|+|++|+.. .. ..+... .|+ .+++|+++++..+|++++++++++.+.+...
T Consensus 149 -l~~i~~la~~~p~~~li~D~a~~~~---~~-~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLP---YP-KFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTT---SS-CCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHhCCCCEEEEecccccC---Cc-ccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCC
Confidence 99999999999 9999999999722 10 011111 344 4788999842226778888888776652110
Q ss_pred --cc------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-----
Q 015230 278 --MY------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG----- 335 (411)
Q Consensus 278 --~~------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----- 335 (411)
.+ .....+.+..++.+..++++.+.. ++.+++.+++.+++.+.|+++ +......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~ 297 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSFGVEDAKL 297 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEESSSCGGG
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCceeccCChhh
Confidence 00 011445677777777777775543 455666677777777777654 2221111
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----Ccceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
..+.++++.+.+ +..++.+.|.++||.+.++. ...+|++ ...+++++++++++|++++
T Consensus 298 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 298 RSMTTIVANTTM---------------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp BCSSEEEEEESS---------------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEecCC---------------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 235567776632 23789999999999999753 3457886 4569999999999998864
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=182.17 Aligned_cols=301 Identities=14% Similarity=0.055 Sum_probs=193.6
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
+|++++++.+.++.+ ..++.....++.+.+++.+ +.+++++++||++|++.+++.+ ...+++.|++..++|++...
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~-~~~~~~~~~sGt~al~~al~~~-~~~~gd~Vi~~~~~~~~~~~ 90 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFV-GAKYCISCANGTDALQIVQMAL-GVGPGDEVITPGFTYVATAE 90 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHh-CCCCcCEEEECCCccHHHHH
Confidence 355667777776664 2235566677788887777 4459999999999999999854 24567789999988886544
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. ....|..+..++.....+.. |++++++.++ +++++|+. ++.+|...+ +++|.++|
T Consensus 91 ~-~~~~G~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~---~~~~G~~~~----~~~i~~la 146 (367)
T 3nyt_A 91 T-VALLGAKPVYVDIDPRTYNL-------------DPQLLEAAIT---PRTKAIIP---VSLYGQCAD----FDAINAIA 146 (367)
T ss_dssp H-HHHTTCEEEEECBCTTTCSB-------------CGGGTGGGCC---TTEEEECC---BCGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCccCCc-------------CHHHHHHhcC---cCCcEEEe---eCCccChhh----HHHHHHHH
Confidence 3 34445444443332111111 7788887775 46777773 234577777 99999999
Q ss_pred HHhCCEEEEecccc-cc-ccccCccccccCCCcchhhh----hhhccC-Ccccccccc-cHHHHHHhcCCCCc-------
Q 015230 214 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGG-RRDIMEMVAPAGPM------- 278 (411)
Q Consensus 214 ~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~----sK~~~~-G~~~g~~~~-~~~~~~~~~~~~~~------- 278 (411)
++||++||+||+|+ |. ..+.. .+...|++++ +|.+++ |. .|+++. ++++.+.+......
T Consensus 147 ~~~~~~li~D~a~~~g~~~~~~~-----~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~ 220 (367)
T 3nyt_A 147 SKYGIPVIEDAAQSFGASYKGKR-----SCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYH 220 (367)
T ss_dssp HHTTCCBEEECTTTTTCEETTEE-----TTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HHcCCEEEEECccccCCeECCee-----ccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCce
Confidence 99999999999997 33 22221 1222266654 499987 76 777766 56676665421110
Q ss_pred --ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEEecCCCCCcch
Q 015230 279 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFED 355 (411)
Q Consensus 279 --~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 355 (411)
..+.++..+++.++++.+.++.+ ++..++.+++.+++++.|+++....+.... ......++.+.+.
T Consensus 221 ~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 289 (367)
T 3nyt_A 221 HIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD--------- 289 (367)
T ss_dssp ECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---------
T ss_pred eeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---------
Confidence 11346778889888888877654 445677788888888888776211111100 0111112233221
Q ss_pred hcccchHHHHHHHHHHHHcCeEeccCCC-c-----------------------ceeee--cCCCHHHHHHHHHHHHH
Q 015230 356 AKKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------------AGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~-----------------------~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
+.+.+.+.|.++||.+.+... + .+++| ...|++|++++++.|.+
T Consensus 290 -------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 290 -------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp -------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 136889999999998876532 0 14554 46799999999999875
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=181.82 Aligned_cols=305 Identities=12% Similarity=0.091 Sum_probs=191.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh
Q 015230 57 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136 (411)
Q Consensus 57 v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~ 136 (411)
+++++.+.+.... .++.....++.+.+++.++ .+++++++||++|++.+++.+ ...+++.|++..++|++.... .
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~~~~~-~~~~gd~v~~~~~~~~~~~~~-~ 95 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEKFEKRFAALHN-APHAIGVGTGTDALAMSFKML-NIGAGDEVITCANTFIASVGA-I 95 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHHHH-H
T ss_pred HHHHHHHHHHcCC--cccChhHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHc-CCCCCCEEEECCCccHHHHHH-H
Confidence 8888888877642 2456777888888888884 458999999999999999853 145678899999999875433 3
Q ss_pred hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh
Q 015230 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216 (411)
Q Consensus 137 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~ 216 (411)
...|..+..++......+ |++++++.++ +++++++ + ++++|...+ +++|.++|++|
T Consensus 96 ~~~g~~~~~~~~~~~~~~--------------d~~~l~~~~~---~~~~~v~--~-~n~~G~~~~----~~~i~~~~~~~ 151 (374)
T 3uwc_A 96 VQAGATPVLVDSENGYVI--------------DPEKIEAAIT---DKTKAIM--P-VHYTGNIAD----MPALAKIAKKH 151 (374)
T ss_dssp HHTTCEEEEECBCTTSSB--------------CGGGTGGGCC---TTEEEEC--C-BCGGGCCCC----HHHHHHHHHHT
T ss_pred HHcCCEEEEEecCCCCCc--------------CHHHHHHhCC---CCceEEE--E-eCCcCCcCC----HHHHHHHHHHc
Confidence 344444433332211111 7788877775 3567766 3 445777777 99999999999
Q ss_pred CCEEEEeccccccccccCccccccCCCcchhhhh----hhccC-Cccccccccc-HHHHHHhcCCCCc---------ccc
Q 015230 217 GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAPAGPM---------YQA 281 (411)
Q Consensus 217 ~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s----K~~~~-G~~~g~~~~~-~~~~~~~~~~~~~---------~~~ 281 (411)
|+++|+||+|+.+ ..+.....+..+|++++| |++++ |. .|+++++ +++.+.+...... ..+
T Consensus 152 ~~~li~D~~~~~g---~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
T 3uwc_A 152 NLHIVEDACQTIL---GRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYG 227 (374)
T ss_dssp TCEEEEECTTCTT---CEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCC
T ss_pred CCEEEEeCCCccC---ceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCcccccc
Confidence 9999999999732 112222334345776555 99986 65 7777654 4565544321110 012
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccc
Q 015230 282 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSE 360 (411)
Q Consensus 282 ~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (411)
.++..+++.++.+...++.+ ++..++.+++.+++++.|+++........... ....+..+.+.. +
T Consensus 228 ~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~- 293 (374)
T 3uwc_A 228 INCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----------K- 293 (374)
T ss_dssp CBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----------T-
T ss_pred ccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-----------C-
Confidence 23344566665554443322 44566677777777777765521011111001 112222222211 1
Q ss_pred hHHHHHHHHHHHHcCeEeccCCC---------------------------cceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 361 TTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 361 ~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+..++.+.|.++||.+.++.. ..+|+ ...+|++|+++++++|++++++
T Consensus 294 --~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 294 --YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp --THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 236889999999999988741 22455 3567999999999999999875
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=175.77 Aligned_cols=275 Identities=13% Similarity=0.014 Sum_probs=177.7
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKG 157 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~ 157 (411)
+.+.+++.++ .++.+++++|++|+..+++.+ ..+++.|++..++|++....... ..|.
T Consensus 3 l~~~la~~~g-~~~~i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~---------------- 63 (331)
T 1pff_A 3 LEGKIAKLEH-AEACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV---------------- 63 (331)
T ss_dssp HHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------------
T ss_pred HHHHHHHHhC-CCeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC----------------
Confidence 4444555554 346777777899999999853 34567899999999875443321 1222
Q ss_pred CCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-hCCEEEEeccccccccccCcc
Q 015230 158 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAYGGA 236 (411)
Q Consensus 158 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-~~~~li~De~~~g~~~g~~~~ 236 (411)
.+..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.......
T Consensus 64 ---~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~~~~-- 131 (331)
T 1pff_A 64 ---EVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPILTNP-- 131 (331)
T ss_dssp ---EEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHHCCG--
T ss_pred ---EEEEeCCCCHHHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccccCCh--
Confidence 233344457888888776 46889999998889999988 9999999999 9999999999973311111
Q ss_pred ccccCCCcchhhhhhhccC-Ccc-cccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015230 237 QEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313 (411)
Q Consensus 237 ~~~~~~~~d~~~~sK~~~~-G~~-~g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 313 (411)
. .++.+..+.|++|++++ |.| +|++++++ ++++.+.+....+ .+.+.+++++.++.++++.+. ...++..++
T Consensus 132 ~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 206 (331)
T 1pff_A 132 L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI--TGAIISPHDAWLITRGTLTLD--MRVKRAAEN 206 (331)
T ss_dssp G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC--CCCCCCHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh--cCCCCCHHHHHHHHcCcchHH--HHHHHHHHH
Confidence 1 23444445689999985 788 78998888 8888887533210 345677888777666665432 223344455
Q ss_pred HHHHHHHHHHHHH----------hcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 314 TGELTQGIIDAGK----------KAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 314 ~~~~~~~l~~~~~----------~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
...+.+.+++... ..+... ..++.|.++.+.+.+ ...+.+.|.++||++.
T Consensus 207 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~~~ 270 (331)
T 1pff_A 207 AQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----------------LEKAKKVLDNCHVVSL 270 (331)
T ss_dssp HHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----------------HHHHHHHHHTCSSSEE
T ss_pred HHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----------------HHHHHHHHHhCCCcee
Confidence 5555555544210 000000 012346777777631 1467788888999764
Q ss_pred cCC------------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 380 PSQ------------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 380 ~~~------------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
... ...+|++ ...|+++++.+++.|+++
T Consensus 271 ~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 271 AVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 331 2346664 566888899888888754
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=183.76 Aligned_cols=305 Identities=16% Similarity=0.115 Sum_probs=194.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
++++++++.+.+.... +.+......++.+.+++.++ .+++++++||++|++.+++.+ ...+++.|++..++|++...
T Consensus 35 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-~~~~i~~~~gt~al~~~l~~~-~~~~gd~vl~~~~~~~~~~~ 111 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-ISSVGRFIVEFEKAFADYCG-VKHAIACNNGTTALHLALVAM-GIGPGDEVIVPSLTYIASAN 111 (391)
T ss_dssp CSSHHHHHHHHHHHTC-CSSCSHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH-TCCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCC-ccCCChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCchHHHHH
Confidence 4778899988888742 22356667788888887774 458999999999999999864 24567899999999987544
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. ....|..+..++.....+.. |++++++.++ +++++|+++ +++|...+ +++|.++|
T Consensus 112 ~-~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~~~---~~~~~v~~~---n~tG~~~~----~~~i~~l~ 167 (391)
T 3dr4_A 112 S-VTYCGATPVLVDNDPRTFNL-------------DAAKLEALIT---PRTKAIMPV---HLYGQICD----MDPILEVA 167 (391)
T ss_dssp H-HHHTTCEEEEECBCTTTCSB-------------CGGGSGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHH
T ss_pred H-HHHCCCEEEEEecCccccCc-------------CHHHHHHhcC---CCceEEEEE---CCCCChhh----HHHHHHHH
Confidence 3 33445444443322111110 7777777765 367777642 35677777 99999999
Q ss_pred HHhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh----hhccCCccccccccc-HHHHHHhcCCCC---------
Q 015230 214 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAPAGP--------- 277 (411)
Q Consensus 214 ~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s----K~~~~G~~~g~~~~~-~~~~~~~~~~~~--------- 277 (411)
++||+++|+||+|+ |. ..+. ..+..+|+.++| |++++ .+.|+++.+ +.+.+.+.....
T Consensus 168 ~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~ 241 (391)
T 3dr4_A 168 RRHNLLVIEDAAEAVGATYRGK-----KSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPNRRY 241 (391)
T ss_dssp HHTTCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHHBTTCCTTSTT
T ss_pred HHcCCEEEEECcccccceECCe-----eecccCCEEEEECCCCCcCCc-CCeEEEEECCHHHHHHHHHHHhcCCCCCCcc
Confidence 99999999999997 33 2221 122223555444 88876 367887654 556555431100
Q ss_pred --cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-------eeecceEEEEEecC
Q 015230 278 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------GYISGMFGFFFTEG 348 (411)
Q Consensus 278 --~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~g~~~~~~~~~~ 348 (411)
...+..+..+++.++++...++.+ ++..++.+++.+++++.|+++ ++.... ...+.++++.+...
T Consensus 242 ~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (391)
T 3dr4_A 242 WFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL----GNRVTKPHVALTGRHVFWMYTVRLGEG 315 (391)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG----TTSEECCCCCTTSCCCCSSEEEEECSS
T ss_pred cccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CccccCcCCCCCCcceeEEEEEEECCc
Confidence 011123456667666665554433 446677777888888887765 221111 12233456665321
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc------------------------ceee--ecCCCHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~------------------------~~~~--~~~~t~~~i~~~i~ 402 (411)
...+..++.+.|.++||.+.++..+ .+++ ...+|++|++++++
T Consensus 316 -----------~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~ 384 (391)
T 3dr4_A 316 -----------LSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIA 384 (391)
T ss_dssp -----------CSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred -----------cchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHH
Confidence 0122368999999999999876411 1455 35679999999999
Q ss_pred HHHHHH
Q 015230 403 AAEKVL 408 (411)
Q Consensus 403 ~l~~~~ 408 (411)
+|++++
T Consensus 385 ~l~~~l 390 (391)
T 3dr4_A 385 ALDQVL 390 (391)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=179.60 Aligned_cols=285 Identities=16% Similarity=0.107 Sum_probs=186.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++.+++++.++. ++.+++++|++|+..+++.. ..+++.||+..+.|++.........
T Consensus 112 ~~~~~~~l~~~lA~l~g~-~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~-------------- 174 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGA-ESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETIL-------------- 174 (445)
T ss_dssp CCHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CChHHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH--------------
Confidence 466778888888888864 36666777889999999843 3456789998888876433211000
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
...+..+..++.+|++++++.++.. .+++|++++++|++|.+.+ +++|.++|++||+++|+||+|+.. .
T Consensus 175 --~~~G~~v~~v~~~d~~~l~~ai~~~--tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~---~ 243 (445)
T 1qgn_A 175 --PKMGITATVIDPADVGALELALNQK--KVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP---L 243 (445)
T ss_dssp --GGGTCEEEEECSSCHHHHHHHHHHS--CEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT---T
T ss_pred --HHcCCEEEEeCCCCHHHHHHHhccC--CCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc---c
Confidence 0112345566667999999999842 3389999999999999988 999999999999999999999722 1
Q ss_pred CccccccCCCcchh--hhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 234 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 234 ~~~~~~~~~~~d~~--~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
. .......+|++ |++|.+++ | .++|++++++++++.+.... .......+++.++.+.+.++.+ +...++
T Consensus 244 ~--~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~---~~~g~~~~~~~a~~~~~~l~~l--~~r~~~ 316 (445)
T 1qgn_A 244 N--QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH---HILGGALNPNAAYLIIRGMKTL--HLRVQQ 316 (445)
T ss_dssp T--CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred c--CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHH---HHhCCCCCHHHHHHHHHhHHHH--HHHHHH
Confidence 1 11123345655 69999986 4 47999999998888775211 1112234666666555555433 223345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceE------------------EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
..++..++.+.|++. +.... .++.|.+++|++.. .......+.+.|
T Consensus 317 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~------------~~~~~~~~l~~l 380 (445)
T 1qgn_A 317 QNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG------------DLLTTAKFVDAL 380 (445)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS------------CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC------------CHHHHHHHHHhC
Confidence 555666676776654 32211 12468889998842 112345566665
Q ss_pred HHcCeEeccCCC---------------------------cceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 372 LEEGVYFAPSQF---------------------------EAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 372 ~~~Gi~v~~~~~---------------------------~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...++.++.|+. +.+|+++. .|+++.+++.|+++++.+
T Consensus 381 ~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 381 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDSI 445 (445)
T ss_dssp SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHHC
T ss_pred CCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhhC
Confidence 544555444432 23666655 568999999999998764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=178.78 Aligned_cols=281 Identities=16% Similarity=0.109 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 150 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~~ 150 (411)
..+...++.+.+++.++. +..+++++|++|+..+++.+ ..+++.|++..+.||+...... ...|.
T Consensus 56 ~~~~~~~l~~~la~~~g~-~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--------- 123 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEGG-KAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--------- 123 (421)
T ss_dssp BCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHHTTC---------
T ss_pred CChHHHHHHHHHHHHhCC-CceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC---------
Confidence 456678888888888853 35677778899999999854 4567889999999997655432 22222
Q ss_pred CCCCCCCCCCceeec-CCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 151 SPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
.+..+ +.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++
T Consensus 124 ----------~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~ 186 (421)
T 2ctz_A 124 ----------EVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMG 186 (421)
T ss_dssp ----------EEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGG
T ss_pred ----------EEEEECCCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 34445 5558999998886 37899999999999999998 999999999999999999999433
Q ss_pred -ccccCccccccCCCcchh--hhhhhccC-Cccccccccc-H--HH----HHHhcCCCCcccc-----------------
Q 015230 230 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR-R--DI----MEMVAPAGPMYQA----------------- 281 (411)
Q Consensus 230 -~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~-~--~~----~~~~~~~~~~~~~----------------- 281 (411)
..+.. .+..+|++ |++|++++ |.|+|+++.. + ++ ++.+.+....+++
T Consensus 187 g~~~~~-----~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r 261 (421)
T 2ctz_A 187 GYLLRP-----LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp GTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred cccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHH
Confidence 22222 23346766 89999995 7899988653 1 11 2223211011110
Q ss_pred ------cCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-------------------ee
Q 015230 282 ------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------------------GY 336 (411)
Q Consensus 282 ------~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------------~~ 336 (411)
.....+++.++++...++.+. ...++..++.+++.+.|++. +.+..+ ++
T Consensus 262 ~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~~~~~~~~~~~~~~~~~~ 335 (421)
T 2ctz_A 262 VDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ----PQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC----CCeeEEECCCCCCCCCHHHHHHhccCC
Confidence 122557777776666655432 23444556666777666653 333222 35
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---------------------------cceeee
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS 389 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~~ 389 (411)
.|.++.|++.+ .......+.+.+...++.++.++. ..+|++
T Consensus 336 ~g~ivsf~l~~------------~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS 403 (421)
T 2ctz_A 336 PGAVLTFGLKG------------GYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS 403 (421)
T ss_dssp CCSEEEEEETT------------HHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred CceEEEEEeCC------------CHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence 68889998842 112334555555444554444321 224444
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 015230 390 LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~ 408 (411)
+ ..++++.+++.|++++
T Consensus 404 ~--g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 404 V--GLEHVEDLKAELKEAL 420 (421)
T ss_dssp C--CSSCHHHHHHHHHHHT
T ss_pred e--CCCCHHHHHHHHHHHh
Confidence 3 4468999999998876
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=173.58 Aligned_cols=314 Identities=12% Similarity=0.024 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhc-------cC----Cc-EEEEEeCCcCCCchhhhhhc
Q 015230 75 CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-------TG----RE-RIIKFEGCYHGHADPFLVKA 139 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~-------~~----~~-~vi~~~~~~~~~~~~~~~~~ 139 (411)
..++.++.+++++.++ . .+.++||+||++|+..+++.++.. .+ ++ .|++ +...|.....++...
T Consensus 131 ~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~-s~~~h~s~~~~~~~~ 209 (504)
T 2okj_A 131 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFT-SEQSHYSIKKAGAAL 209 (504)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEE-CCcchHHHHHHHHHc
Confidence 3456778899999887 4 679999999999999999877532 22 13 4555 444444444444444
Q ss_pred CC---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 140 GS---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 140 g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
|. .+..++......+ |+++|++++++. ..++++|+++..++++|.+.+ +++|.++|
T Consensus 210 g~g~~~v~~v~~~~~~~~--------------d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la 271 (504)
T 2okj_A 210 GFGTDNVILIKCNERGKI--------------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADIC 271 (504)
T ss_dssp TSCGGGEEEECBCTTSCB--------------CHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHH
T ss_pred CCCcccEEEEecCCCCCC--------------CHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHH
Confidence 43 2333332211111 899999999742 225788888888888898888 99999999
Q ss_pred HHhCCEEEEecccccc-ccccCccccccCC-Ccchhh--hhhhccCCcccccccccH-HHHHH-hcCCCCccccc-C---
Q 015230 214 KENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIMEM-VAPAGPMYQAG-T--- 283 (411)
Q Consensus 214 ~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~~--~sK~~~~G~~~g~~~~~~-~~~~~-~~~~~~~~~~~-t--- 283 (411)
++||+++++|++|+++ .....+.....++ .+|+++ .+|++++++++|++++++ ++++. +........+. .
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD 351 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc
Confidence 9999999999999866 3322111122233 456654 569998767899998765 45553 22211211110 0
Q ss_pred -------------CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE---eeecceEEEEEec
Q 015230 284 -------------LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISGMFGFFFTE 347 (411)
Q Consensus 284 -------------~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~g~~~~~~~~~ 347 (411)
-....+.+.++++++..-.-+++.++..++.+++.+.|+++ +..... .+.+.++.|....
T Consensus 352 ~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~ 427 (504)
T 2okj_A 352 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIP 427 (504)
T ss_dssp GGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECC
T ss_pred CcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeC
Confidence 01235666665555532111455667777777777777653 221111 1334445554422
Q ss_pred CCCCCc--chhccc-chHHHHHHHHHHHHcCeE-eccC---CC-cceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 348 GPVYNF--EDAKKS-ETTKFARFYRGMLEEGVY-FAPS---QF-EAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 348 ~~~~~~--~~~~~~-~~~~~~~~~~~l~~~Gi~-v~~~---~~-~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...... ...+.. ......++.+.|.++|++ +.+. +. ..+|+++ .+|++++++++++|+++++++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 428 QSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp GGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 110000 000000 011245788899999954 4321 21 3577754 479999999999999987653
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-19 Score=173.23 Aligned_cols=311 Identities=14% Similarity=0.075 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-----c-CC-----c-EEEEEeCCcCCCchhhhhhcCC
Q 015230 75 CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----T-GR-----E-RIIKFEGCYHGHADPFLVKAGS 141 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-----~-~~-----~-~vi~~~~~~~~~~~~~~~~~g~ 141 (411)
.+.+.++.+++++.++ ..+.++||+||++|+..+++.++.. . ++ . .|++.+.. |.....++...|.
T Consensus 147 ~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~ 225 (515)
T 2jis_A 147 VLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGL 225 (515)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCC
Confidence 3556788899999987 5679999999999999999877532 1 12 2 45554444 5455555555454
Q ss_pred ---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH
Q 015230 142 ---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 215 (411)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~ 215 (411)
.+..++......+ |+++|++++++. ..++++|+++..++++|.+.+ +++|.++|++
T Consensus 226 g~~~v~~v~~~~~~~~--------------d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~ 287 (515)
T 2jis_A 226 GTDSVRVVKADERGKM--------------VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQR 287 (515)
T ss_dssp CGGGEEEECBCTTSCB--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred CCCcEEEEecCCCCcC--------------CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence 2333332211111 899999999742 225788888888888999988 9999999999
Q ss_pred hCCEEEEecccccc-ccccCccccccCC-Ccchhh--hhhhccCCcccccccccHH--HHHHh-cCCCCccc--------
Q 015230 216 NGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--IMEMV-APAGPMYQ-------- 280 (411)
Q Consensus 216 ~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~~--~sK~~~~G~~~g~~~~~~~--~~~~~-~~~~~~~~-------- 280 (411)
||+++++|++|+++ .....+.....++ .+|+++ ++|++++++++|+++++++ +++.. ........
T Consensus 288 ~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred cCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999866 4333222222233 467664 5899987667899977655 65542 11111110
Q ss_pred ---ccCC------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCC
Q 015230 281 ---AGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPV 350 (411)
Q Consensus 281 ---~~t~------~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~ 350 (411)
..++ ....+.+.++++++..-.-+++.++..++.+++.+.|+++ +..... ......+.|.+.....
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~p~~~ 443 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR----EGFELVMEPEFVNVCFWFVPPSL 443 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTEEESSCCSSSEEEEEECCGGG
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCeeEEEEEEeCccc
Confidence 0011 1123444444444432111556677788888888888764 221111 1223334444321110
Q ss_pred CCcchhcccch--H----HHHHHHHHHHHcCeEecc-----CCCcceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 351 YNFEDAKKSET--T----KFARFYRGMLEEGVYFAP-----SQFEAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 351 ~~~~~~~~~~~--~----~~~~~~~~l~~~Gi~v~~-----~~~~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.... .... . ....+.+.+.++|+.+.. +....+|+++ .+|++++++++++|+++++++
T Consensus 444 ~~~~---~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 444 RGKQ---ESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp TTCT---TSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred cccc---cchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 0000 0000 0 123477888888975522 2223567654 489999999999999988764
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=175.90 Aligned_cols=322 Identities=11% Similarity=-0.013 Sum_probs=196.3
Q ss_pred CcHHHHHHHHHHHHcCC-CCC-C--CCHHHHHHHHHHHhhCC-CCC-----EEEEeCChHHHHHHHHHHHHhc-------
Q 015230 53 ADDQVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVP-SIE-----MVRFVNSGTEACMGVLRLARAF------- 115 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~-~~~-~--~~~~~~~l~~~l~~~~~-~~~-----~v~~~~~g~~a~~~al~~~~~~------- 115 (411)
.+|.+.+++.+++.... .+. + ..++++++.+++++.++ ..+ .+++|+||++|+..++..++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999988886521 111 1 24567889999999997 433 4999999999999999765421
Q ss_pred cC----CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc
Q 015230 116 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 191 (411)
Q Consensus 116 ~~----~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~ 191 (411)
.+ ++.|++.+ .|..+..+....|..+..++.....+.. |+++++++++. ++++|+++.
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~~v~~~~~~~~~-------------d~~~l~~~i~~---~t~~v~~~~ 195 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELREIPMRPGQLFM-------------DPKRMIEACDE---NTIGVVPTF 195 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEEECCCBTTBCSC-------------CHHHHHHHCCT---TEEEEECBB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEEEEecCCCCCeE-------------CHHHHHHHHhh---CCEEEEEEc
Confidence 22 24666655 6655555555566655554432211111 89999998863 577888887
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHh------CCEEEEecccccc-c--cccCccccccCCCcchh--hhhhhccCCcccc
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVG 260 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~------~~~li~De~~~g~-~--~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g 260 (411)
.++++|.+.+ +++|.++|++| ++++++|++|.++ . .......+.--...|.+ +.+|++.+|+++|
T Consensus 196 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G 271 (452)
T 2dgk_A 196 GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 271 (452)
T ss_dssp SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeE
Confidence 7778899988 99999999996 9999999999865 2 12111111100134544 4569776788899
Q ss_pred cccccH-HHH-HHhcCCCCccccc-------CCCC---CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 261 AYGGRR-DIM-EMVAPAGPMYQAG-------TLSG---NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 261 ~~~~~~-~~~-~~~~~~~~~~~~~-------t~~~---~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
++++++ ..+ +.+... +.+.+. ..+. ..+++.+++..+..-.-++..++..++.+++.+.|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---- 346 (452)
T 2dgk_A 272 WVIWRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL---- 346 (452)
T ss_dssp EEEESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred EEEEcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 998754 333 433210 111110 0111 22333333333321111455666777777777777654
Q ss_pred CCceEE-e----eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEecc----CC---Ccceeee--cCCCH
Q 015230 329 GHAICG-G----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----SQ---FEAGFTS--LAHSS 394 (411)
Q Consensus 329 ~~~~~~-~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~~---~~~~~~~--~~~t~ 394 (411)
+..... . ....++.|.+..... ......++.+.|.++|+.+.. .. ...+|++ ...|+
T Consensus 347 ~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~ 417 (452)
T 2dgk_A 347 GPYEFICTGRPDEGIPAVCFKLKDGED---------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEM 417 (452)
T ss_dssp SSEEEEEECCTTTBSSEEEEEECTTCC---------CSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCH
T ss_pred CCeEEecCCCCCCCeEEEEEEecCccc---------ccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCH
Confidence 322222 2 235566776642110 001136789999999996542 21 2246764 44589
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
++++++++.|++++++
T Consensus 418 e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 418 DFAELLLEDYKASLKY 433 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=172.97 Aligned_cols=314 Identities=13% Similarity=0.096 Sum_probs=191.6
Q ss_pred CcHHHHHHHHHHHHcCC-C-CC---CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 53 ADDQVLAALGETMKKGT-S-FG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~-~-~~---~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
.+|++++++.++++.+. . ++ +..++.+++.+.+++.++ .+++++++||++|+..+++.+ ...+++.|++..++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g-~~~~i~~~~gt~al~~~~~~~-~~~~gd~Vl~~~~~ 91 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNG-VPYCVPTTSGSTALMLALEAL-GIGEGDEVIVPSLT 91 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCc
Confidence 47899999999998742 1 21 224557888888888875 347888999999999999853 13456789999999
Q ss_pred cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHH
Q 015230 128 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207 (411)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~ 207 (411)
|++.... ....|..+..++.....+.. |++++++.++ +++++|++++ ++|...+ ++
T Consensus 92 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 92 WIATATA-VLNVNALPVFVDVEADTYCI-------------DPQLIKSAIT---DKTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp CTHHHHH-HHHTTCEEEEECBCTTTCSB-------------CHHHHGGGCC---TTEEEECCBC---CTTCCCC----HH
T ss_pred cHhHHHH-HHHcCCEEEEEecCCCCCCc-------------CHHHHHHhhC---CCCeEEEEeC---CcCCccc----HH
Confidence 9876543 33445544443322111110 8888888776 3577777643 4677666 99
Q ss_pred HHHHHHHHhCCEEEEecccccc-cc-ccCccccccCCCcchhhh--hhhccCCcccccccc-cHHHHHHhcCCCCc----
Q 015230 208 AIRRITKENGALLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGPM---- 278 (411)
Q Consensus 208 ~i~~l~~~~~~~li~De~~~g~-~~-g~~~~~~~~~~~~d~~~~--sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~---- 278 (411)
+|.++|++||++||+||+|+.+ .. +.. ...++ +.++.|| +|++++| ++|++++ ++++++.+......
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~ 223 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNNQR--AGTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY 223 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEE--TTSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred HHHHHHHHCCCEEEEECcccccCccCCEe--ccccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence 9999999999999999999854 22 211 11111 2445577 9999887 9999988 47776655421000
Q ss_pred ----------cc--c---c----CCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeec
Q 015230 279 ----------YQ--A---G----TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYIS 338 (411)
Q Consensus 279 ----------~~--~---~----t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g 338 (411)
+. . . ....+++.++.....++.+ ++..++.+++.+++.+.|+++ +..... ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~ 297 (418)
T 2c81_A 224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----DGIKVMKRPPQ 297 (418)
T ss_dssp CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----TTEEECCCCTT
T ss_pred cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCcccCCCCCC
Confidence 10 0 0 0112333333332222221 344555666666666666543 222111 1112
Q ss_pred ----c--eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeE---eccCCC-------------------------
Q 015230 339 ----G--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY---FAPSQF------------------------- 383 (411)
Q Consensus 339 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~---v~~~~~------------------------- 383 (411)
. ++.+.+.+... ...+..++.+.|.++ ||. +.++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 368 (418)
T 2c81_A 298 VSRQTYYGYVFRFDPVKF---------GGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEA 368 (418)
T ss_dssp EEECCCSEEEEEECGGGT---------TTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHH
T ss_pred CcccccEEEEEEEccccc---------cccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccccc
Confidence 2 23355532000 011236889999999 999 765421
Q ss_pred ---------------cceeee--cCC-CHHHHHHHHHHHHHHHHhC
Q 015230 384 ---------------EAGFTS--LAH-SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 384 ---------------~~~~~~--~~~-t~~~i~~~i~~l~~~~~~~ 411 (411)
..+|++ ..+ |++|+++++++|+++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 369 YWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 135664 466 9999999999999988753
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=175.63 Aligned_cols=297 Identities=11% Similarity=0.039 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhhCC-CCCEEEEeCChH-HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC-CC
Q 015230 76 LLENVLAEMVISAVP-SIEMVRFVNSGT-EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SP 152 (411)
Q Consensus 76 ~~~~~l~~~l~~~~~-~~~~v~~~~~g~-~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 152 (411)
+..+++.+++++.++ ..+ ++||+||+ .++..++..++...+++.||+.++.|+. ...++...|.++..++... ..
T Consensus 133 ~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s-~~~~~~~~G~~~~~v~~~~~~~ 210 (456)
T 2z67_A 133 ALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PIKAVSFVGMNMRLVETVLDGD 210 (456)
T ss_dssp HHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH-HHHHHHHcCCCceEEEEeccCC
Confidence 455778899999997 444 99999999 5666666654333344556767775554 4444444555444433210 01
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHH-HcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLF-ENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 230 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~-~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~ 230 (411)
. .. -|++++++++ +.. ..++.+|++...++++|.+.+ +++|.++|++||+++++||+|+++.
T Consensus 211 ~---------~~---~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 211 R---------VY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp E---------EE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred C---------CC---cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH
Confidence 0 01 1899999999 420 125666666666667888888 9999999999999999999997551
Q ss_pred ccc-CccccccCCCcchh--hhhhhccCCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 231 LAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 231 ~g~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
.|. ......+...+|++ +++|++++++++|++++ ++++++.+.+ .+.+.....+.+++.++...+..-.-++.
T Consensus 275 ~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~g~~~~~~~~~~~aal~~l~~~~~~~~ 351 (456)
T 2z67_A 275 NYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRASATPVVNTLVSLLSMGSKNYLEL 351 (456)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCBCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111111145544 67898887788999988 5777777753 22222211123333333333321111567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe---Eec----
Q 015230 307 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFA---- 379 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi---~v~---- 379 (411)
.++..++.+++.+.|+++....+.... ... .++++.+.... . ..++.+.|.++|+ .+.
T Consensus 352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~-~~~-~~v~~~~~~~~----------~---~~~l~~~L~~~gi~~~rv~~~~g 416 (456)
T 2z67_A 352 VKNQKNSKKLLDELLNDLSKKTGGKFL-DVE-SPIASCISVNS----------D---PVEIAAKLYNLRVTGPRGIKKTD 416 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBC-CCC-CSSEEEEECSS----------C---HHHHHHHHHHTTEESCEEECTTC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCEec-CCC-CeEEEEEeccc----------H---HHHHHHHHHHcCCCcceEEeecC
Confidence 788889999999999887322222111 122 55666652111 0 2567888999886 332
Q ss_pred --------cCCCcceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 380 --------PSQFEAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 380 --------~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
....+.+|++ ..+|++++++++++|++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 1112345664 4579999999999998764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=171.23 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.....+++.+.+++.++. +++++++||++|+..+++ . ..+++.|++..+.|++.........
T Consensus 52 ~~~~~~~~lr~~la~~~g~-~~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 114 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA-QYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVA------------- 114 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC-SEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTS-------------
T ss_pred CCChhHHHHHHHHHHHhCC-CcEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHH-------------
Confidence 3456677888888888853 367777788999999998 3 3456789999988886432211000
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh----CCEEEEeccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTG 228 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~----~~~li~De~~~g 228 (411)
...+..+..++.+| ++++++++ +++++|++++++|++|.+.+ +++|.++|++| |+++|+||+|+.
T Consensus 115 ---~~~G~~v~~v~~~d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~ 183 (393)
T 1n8p_A 115 ---NAHGVETSFTNDLL-NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp ---TTTCSCCEEESSHH-HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred ---HHcCcEEEEeCCCh-HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCccc
Confidence 01123455566557 88888776 46889999999999999998 99999999999 999999999985
Q ss_pred c-ccccCccccccCCCcchhhhhhhccC-Cccc-cccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC
Q 015230 229 F-RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304 (411)
Q Consensus 229 ~-~~g~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~ 304 (411)
+ .. ... .++.+.-+.|++|.+++ |+|+ |+++++ +++++.+.... .......++..++++.++++.+ +
T Consensus 184 ~~~~-~~~---~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~---~~~g~~~~~~~~~~~~~~l~~~--~ 254 (393)
T 1n8p_A 184 PYIS-NPL---NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ---NAIGAIPSPFDAWLTHRGLKTL--H 254 (393)
T ss_dssp HHHC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccC-CHH---HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhccchH--H
Confidence 5 32 221 12333334489999995 8898 888874 78877775311 1112234566666655555432 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCC-ceEE------------------ee-e-cceEEEEEecCCCCCcchhcccchHH
Q 015230 305 GTYEYLNKITGELTQGIIDAGKKAGH-AICG------------------GY-I-SGMFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~------------------~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
...++..++...+.+.|++. +. ...+ ++ . |.+++|.+.. ...+
T Consensus 255 ~~~~~~~~~~~~l~~~L~~~----~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~------------~~~~ 318 (393)
T 1n8p_A 255 LRVRQAALSANKIAEFLAAD----KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG------------GAEA 318 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTSC----TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC------------cHHH
Confidence 23344555556666655543 21 1111 12 4 7788888842 1233
Q ss_pred HHHHHHHHHHcCeEeccCC---------------------------Ccceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 364 FARFYRGMLEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 364 ~~~~~~~l~~~Gi~v~~~~---------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
...+...+...++.++.++ ...+|++ ...++++++.+.++|+++.
T Consensus 319 ~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 319 ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 4556666544444433221 1235665 4557788888888887653
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-21 Score=180.00 Aligned_cols=276 Identities=11% Similarity=0.011 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHhhCC--CC-CEEEEeCChHHHHHHHHHHHHhccCCc----EEEEEeCCcCCCchhhhhhcCCCCcccC
Q 015230 75 CLLENVLAEMVISAVP--SI-EMVRFVNSGTEACMGVLRLARAFTGRE----RIIKFEGCYHGHADPFLVKAGSGVATLG 147 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~--~~-~~v~~~~~g~~a~~~al~~~~~~~~~~----~vi~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (411)
.++++.+++++...-. .+ ++|++|+|+++++..+++.. ..+++ .|++.+++|+... ......|..+..+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l--~~~Gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~~~~~- 146 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHAL--SSLARSQPVSVVAAAPFYSTYV-EETTYVRSGMYKW- 146 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHH--HHTSSSSSEEEEECSSCCTHHH-HHHHTTCBTTEEE-
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHh--cCCCCCCcceEEEcCCCchhHH-HHHHHcCCeEEEe-
Confidence 5667777877763211 24 69999999999999998754 23455 7889888887533 3333333322221
Q ss_pred CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC--CEEEEecc
Q 015230 148 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 225 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~--~~li~De~ 225 (411)
+. |.+.++ . .++++++++..+|++|.+.. +|.+ ++|+ ++||+||+
T Consensus 147 ------------------~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 147 ------------------EG-DAWGFD----K--KGPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp ------------------EE-ESTTCC----C--CSCEEEEEESSCTTTCCCCC------CCC-------CCCEEEEECT
T ss_pred ------------------cC-CHHHcC----C--CCCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEEEEeCC
Confidence 11 111111 1 24555555444556666653 2333 2266 99999999
Q ss_pred ccccccccCccccccCCCcchhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-
Q 015230 226 MTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK- 302 (411)
Q Consensus 226 ~~g~~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~- 302 (411)
|..-.. ..... ..+....+.||||.++ .|+|+||+++ ++++++.+.. .....+++.+.+++.++.++++...
T Consensus 194 y~~~~~-~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~ 268 (391)
T 3bwn_A 194 YYWPHY-TPITR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVE---YIIVNSIGVSKESQVRTAKILNVLKE 268 (391)
T ss_dssp TCSTTT-SCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-Ccccc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHH---HhcccccCCCHHHHHHHHHHHhCcch
Confidence 972010 11111 1233344569999998 7999999986 8888887763 1222246778898988888887542
Q ss_pred ---------c--CChHHHHHHHHHHHHHHHHHHHHhcCCc----eE-------EeeecceEEEEEecCCCCCcchhcccc
Q 015230 303 ---------E--PGTYEYLNKITGELTQGIIDAGKKAGHA----IC-------GGYISGMFGFFFTEGPVYNFEDAKKSE 360 (411)
Q Consensus 303 ---------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (411)
. +++++.++++.+++.+.|+++ ....+. .. ....|+++|+.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------ 335 (391)
T 3bwn_A 269 TCKSESESENFFKYGREMMKNRWEKLREVVKES-DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------ 335 (391)
T ss_dssp HTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC-SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccCCccccccccccCCCcceEEEecCCcH------------
Confidence 1 344555666666666666553 101110 00 123466888887421
Q ss_pred hHHHHHHHHHHHHcCeEeccCC-----CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 361 TTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 361 ~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
..+.+.|.++||.+.++. .+.+|+++..+++++++++++|+++++
T Consensus 336 ----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 336 ----TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKL 385 (391)
T ss_dssp ----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC-
T ss_pred ----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 346677889999999873 346899988899999999999987654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=173.66 Aligned_cols=308 Identities=9% Similarity=-0.039 Sum_probs=187.2
Q ss_pred CCcHHHHHHHHHHHHcCC-----CCCC---C---CHHHHHHHHHHHhhCC-C-CCEEEEeCCh-HHHHHHHHHHHHhccC
Q 015230 52 HADDQVLAALGETMKKGT-----SFGA---P---CLLENVLAEMVISAVP-S-IEMVRFVNSG-TEACMGVLRLARAFTG 117 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~-----~~~~---~---~~~~~~l~~~l~~~~~-~-~~~v~~~~~g-~~a~~~al~~~~~~~~ 117 (411)
..++.+++++.+.++... .+.. . .+..+++.+++++.++ . ++++++|+|+ ++|+..++.......+
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~ 92 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGT 92 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCC
Confidence 368899999999886520 0101 1 2346788899988887 3 4699999998 9999998864321112
Q ss_pred CcEEEEE-eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH-HHHcCCCcEEEEEEcccCCC
Q 015230 118 RERIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 118 ~~~vi~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~~~~vi~~~~~~~ 195 (411)
++++|+. ..+|+. .......| .+..++.....+. .|++++++ .++ +++++|++++++|+
T Consensus 93 ~g~~vi~~~~~~~~--~~~~~~~g-~~~~v~~~~~~~~-------------~d~~~l~~~~i~---~~~k~v~~~~~~np 153 (360)
T 1w23_A 93 IGNYVLTGSWSEKA--LKEAKLLG-ETHIAASTKANSY-------------QSIPDFSEFQLN---ENDAYLHITSNNTI 153 (360)
T ss_dssp EEEEEECSHHHHHH--HHHHHTTS-EEEEEEECGGGTS-------------CSCCCGGGCCCC---TTEEEEEEESEETT
T ss_pred cccEEEecchhHHH--HHHHHHhC-CeEEeecccccCc-------------CCccchHhhccC---CCCCEEEEeCCCCC
Confidence 2333333 323322 11122234 3333322110111 15555665 553 46788888887888
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
+|.+.+ +++++||++||+||+|+.+ ... .... .+.-+.++||.++.+ .+||+++++++++.+.+
T Consensus 154 tG~~~~---------~i~~~~~~~li~D~a~~~~~~~~---~~~~--~di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~~ 218 (360)
T 1w23_A 154 YGTQYQ---------NFPEINHAPLIADMSSDILSRPL---KVNQ--FGMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVE 218 (360)
T ss_dssp TTEECS---------SCCCCCSSCEEEECTTTTTSSCC---CGGG--CSEEEEETTTTTSCT-TCEEEEEEHHHHCSCCT
T ss_pred cceecc---------cccccCCceEEEechhhcCCCCc---Cccc--CCEEEEEcccccCCC-CcEEEEEcHHHHhhccc
Confidence 888754 1223899999999999743 211 1111 122234788999731 38999999988876654
Q ss_pred CCCcc--------cccC-CCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC-CceE---Ee-e
Q 015230 275 AGPMY--------QAGT-LSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-HAIC---GG-Y 336 (411)
Q Consensus 275 ~~~~~--------~~~t-~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~-~ 336 (411)
..+.. ...+ .+.+..+++++.++++.+.+ ++++++++++.+++.+.|+++ + +... .. .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~ 294 (360)
T 1w23_A 219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYVGHAEKGSR 294 (360)
T ss_dssp TCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSEESSCGGGB
T ss_pred CCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCcccccCCchhc
Confidence 22111 0112 34466666677777776543 345666777777777777654 3 2111 11 1
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.++++.+. ...+..++.+.|.++||.+.++. .+.+|+++. .+++++++++++|++++++
T Consensus 295 ~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 295 SLMNVTFNLR-------------NEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CSSEEEEECS-------------SHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEcC-------------CCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 2447888762 22334678888999999998874 246888654 6999999999999998764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=167.22 Aligned_cols=305 Identities=11% Similarity=-0.009 Sum_probs=191.5
Q ss_pred CcHHHHHHHHHHHHcCC---------CCCCC--CHHHHHHHHHHHhhCC-CCC-E-EEEeCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGT---------SFGAP--CLLENVLAEMVISAVP-SIE-M-VRFVNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~---------~~~~~--~~~~~~l~~~l~~~~~-~~~-~-v~~~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+|++++++.+.+.+.. ...++ .+..+++.+++++.++ ..+ + +++|+||++++..+++.. ..++
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l--~~~g 92 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--LKEG 92 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc--CCCC
Confidence 78999999999886421 11111 3356789999999887 332 6 467899999999999753 3456
Q ss_pred cEEEEEeCCcCCCc-hhhhhhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 119 ERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 119 ~~vi~~~~~~~~~~-~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
+.|++.++++++.. .......| .+..++... ..+... |.++++ ++ +++++|++.+++++
T Consensus 93 d~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~------------~~~~~~--i~---~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 93 QTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLP------------KLQEIQ--LQ---DNAAYLHLTSNETI 154 (362)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCC------------CGGGCC--CC---TTEEEEEEESEETT
T ss_pred CeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCC------------CHHHcc--cC---CCcCEEEEeCCcCc
Confidence 77888776655432 12233345 555443321 111100 333332 22 46788887777778
Q ss_pred CCcc-CCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhc
Q 015230 196 SGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 196 ~G~~-~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~ 273 (411)
+|.. .+ +++| ||+++|+||+|+.+. ....+. ..+.-+.+++|+++ .| +||+++++++++.+.
T Consensus 155 tG~~~~~----l~~i------~~~~vivD~a~~~~~--~~~~~~--~~d~~~~s~~K~~g~~G--~G~l~~~~~~~~~l~ 218 (362)
T 2c0r_A 155 EGAQFKA----FPDT------GSVPLIGDMSSDILS--RPFDLN--QFGLVYAGAQKNLGPSG--VTVVIVREDLVAESP 218 (362)
T ss_dssp TTEECSS----CCCC------TTSCEEEECTTTTTS--SCCCGG--GCSEEEEETTTTTCCSS--CEEEEEEGGGSSSCC
T ss_pred cceeccc----cccc------CCCEEEEEChhhccC--Cccchh--HCcEEEEeccccccCcC--cEEEEEcHHHHhhcc
Confidence 8884 54 5555 899999999997221 011111 12222448899997 35 899999988876665
Q ss_pred CCCCccc---------ccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC-C-ceEE---e
Q 015230 274 PAGPMYQ---------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-H-AICG---G 335 (411)
Q Consensus 274 ~~~~~~~---------~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~---~ 335 (411)
+..+.+. ...++.+..+++++.++++.+.+ ++.+++.+++.+++.+.|+++ + + .... .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~ 294 (362)
T 2c0r_A 219 KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQS----GGFYRGCVDVDS 294 (362)
T ss_dssp TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS----TTSSEESSCGGG
T ss_pred ccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc----CCccccCCChHH
Confidence 3211111 22356777888888888876543 455666777777777777654 3 2 1100 1
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
..+.++++.+ +...+..++.+.|.++||.+.++. ...+|+++. +|+++++++++.|++++++
T Consensus 295 ~~~~~~~~~~-------------~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 295 RSDMNITFRL-------------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp BCSSEEEEEC-------------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEc-------------CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 2244566655 223345788999999999887753 235788654 5899999999999988764
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-20 Score=176.38 Aligned_cols=321 Identities=18% Similarity=0.126 Sum_probs=194.6
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC------CC---CCHHHHHHHHHHHhhCC-CCC----EEEEeCCh
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF------GA---PCLLENVLAEMVISAVP-SIE----MVRFVNSG 101 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~------~~---~~~~~~~l~~~l~~~~~-~~~----~v~~~~~g 101 (411)
.++++++ . +..++.+++++.+.+.+.. ++ ++ ..++++.+.+++++.++ ..+ .|+++ +|
T Consensus 46 ~i~L~a~---e--~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~-sG 119 (483)
T 1rv3_A 46 GLELIAS---E--NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SG 119 (483)
T ss_dssp SEECCTT---C--CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SH
T ss_pred CeEEEcC---C--CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC-Cc
Confidence 4666655 2 2368999999999887632 11 11 13455677789999997 443 25555 56
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh-------hhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHH
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL-------VKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSA 172 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~ 172 (411)
++++.+++... ..+++.|++.++.|.+...... ...|..+..++.+. ..+. -|+++
T Consensus 120 s~an~~~~~al--l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~-------------iD~d~ 184 (483)
T 1rv3_A 120 SPANFAVYTAL--VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGY-------------IDYDR 184 (483)
T ss_dssp HHHHHHHHHHH--TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCS-------------BCHHH
T ss_pred HHHHHHHHHHh--cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCc-------------CCHHH
Confidence 68888877643 4567889999988877643221 11111111111110 0111 18999
Q ss_pred HHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchh--
Q 015230 173 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT-- 247 (411)
Q Consensus 173 l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~-- 247 (411)
+++.+++. ++++|++ ..++++ .+.+ +++|+++|++||++||+|++|. |+ ..+.. .... ..|++
T Consensus 185 le~~i~~~--~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~ 252 (483)
T 1rv3_A 185 LEENARLF--HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTT 252 (483)
T ss_dssp HHHHHHHH--CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEE
T ss_pred HHHHHhhc--CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEe
Confidence 99999742 4667777 444444 5666 9999999999999999999996 55 33321 1111 23544
Q ss_pred hhhhhccCCcccccccccHH---------------HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHH
Q 015230 248 TLGKIIGGGLPVGAYGGRRD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEY 309 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~---------------~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~ 309 (411)
|++|+|+ |+|.|+++++++ +.+.+... .+.+...+.+....++..++++.+.. ++++++
T Consensus 253 s~~K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~--~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~ 329 (483)
T 1rv3_A 253 TTHKTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA--VFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQ 329 (483)
T ss_dssp ESSGGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cCcccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhh--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 6789995 668899988764 22322210 00111223344455555556665543 566777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec----cCC--
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ-- 382 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~~-- 382 (411)
++++.+++.+.|+++ ++.....+ ...++++++.... .+...+.+.|.+.||.+. |+.
T Consensus 330 ~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~g------------~~~~~~~~~L~~~gI~v~~~~~pg~~~ 393 (483)
T 1rv3_A 330 VVANCRALSAALVEL----GYKIVTGGSDNHLILVDLRSKG------------TDGGRAEKVLEACSIACNKNTCPGDKS 393 (483)
T ss_dssp HHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEEGGGGT------------CCHHHHHHHHHHTTEECEEECCSSCSC
T ss_pred HHHHHHHHHHHHHhc----CCEeccCCCCCceEEEeccCCC------------CCHHHHHHHHHhCCcEEecCCCCCCCc
Confidence 888888888888765 32211111 1246667663211 123567788889999998 753
Q ss_pred ---CcceeeecC--CC----HHHHHHHHHHHHHHHHh
Q 015230 383 ---FEAGFTSLA--HS----SDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ---~~~~~~~~~--~t----~~~i~~~i~~l~~~~~~ 410 (411)
...+|+++. +| ++++++++++|.++++.
T Consensus 394 ~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 394 ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 234777432 35 89999999999988753
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-19 Score=165.18 Aligned_cols=303 Identities=14% Similarity=0.108 Sum_probs=191.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH-----hccCCcEEEEEeCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-----AFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~-----~~~~~~~vi~~~~~ 127 (411)
-+|++++++.++++.+. .++.....++.+.+++.++ .++++++++|++|+..+++.++ ...+++.|++..++
T Consensus 13 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~-~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~ 89 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM--FTMGEYVKQYETQFAKTFG-SKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVS 89 (390)
T ss_dssp CCHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCC
Confidence 57899999999998742 2345666777788877774 4478999999999999998642 14456789999999
Q ss_pred cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHH
Q 015230 128 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207 (411)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~ 207 (411)
|++..... ...|..+..++.....+.. |++++++.++ +++++|++.+ +.|...+ ++
T Consensus 90 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~---~~g~~~~----~~ 145 (390)
T 3b8x_A 90 WSTTYYPL-QQYGLRVKFVDIDINTLNI-------------DIESLKEAVT---DSTKAILTVN---LLGNPNN----FD 145 (390)
T ss_dssp CHHHHHHH-HHTTCEEEEECBCTTTCSB-------------CHHHHHHHCC---TTEEEEEEEC---GGGCCCC----HH
T ss_pred cHHHHHHH-HHcCCEEEEEecCccccCc-------------CHHHHHHHhC---cCCeEEEEEC---CccChhh----HH
Confidence 98765543 3445444443322110111 8999998886 3567776642 3455556 99
Q ss_pred HHHHHHHHhCCEEEEecccc-ccccccCccccccCCCcchhhhhhhcc----CCcccccccccH-HHHHHhc---CCC--
Q 015230 208 AIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIG----GGLPVGAYGGRR-DIMEMVA---PAG-- 276 (411)
Q Consensus 208 ~i~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~~~~d~~~~sK~~~----~G~~~g~~~~~~-~~~~~~~---~~~-- 276 (411)
+|.++|++||+++|+||+|+ |... ....++..+|+.++||..+ +| +.|++++++ ++.+.+. ...
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~~----~~~~~g~~~~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~~ 220 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGATF----NNKCAGTFGLMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGWT 220 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTBS
T ss_pred HHHHHHHHcCCEEEEECcCcccCEE----CCcccccccceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 4311 1234566678877776443 22 347777764 5544332 111
Q ss_pred -C------------------cc----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 277 -P------------------MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 277 -~------------------~~----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
. .+ .+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+++ +....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~~~~ 294 (390)
T 3b8x_A 221 RNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL--PRFISVRRKNAEYFLDKFKDH----PYLDV 294 (390)
T ss_dssp TTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTC----SSEEE
T ss_pred ccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC----CCccc
Confidence 0 00 1122337788888887777655 356677777777777777653 22111
Q ss_pred Ee--eecce--EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC---C---C-c------------------
Q 015230 334 GG--YISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---Q---F-E------------------ 384 (411)
Q Consensus 334 ~~--~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---~---~-~------------------ 384 (411)
.. ....+ +++.+... ......++.+.|.++||.+.+. . . +
T Consensus 295 ~~~~~~~~~~~~~i~~~~~-----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKD-----------SGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEY 363 (390)
T ss_dssp CCCCSBCCCCEEEEEECTT-----------SCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHH
T ss_pred CCCCCCcccEEEEEEecCc-----------CcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHH
Confidence 11 11222 44444311 0112367899999999998862 1 1 1
Q ss_pred ----ceeee--cCCCHHHHHHHHHHH
Q 015230 385 ----AGFTS--LAHSSDDIQHTITAA 404 (411)
Q Consensus 385 ----~~~~~--~~~t~~~i~~~i~~l 404 (411)
.+|++ ..+|++|++++++.|
T Consensus 364 ~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 364 LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 14554 567999999999876
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=170.29 Aligned_cols=284 Identities=16% Similarity=0.118 Sum_probs=181.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+......++.+++++.++ .+..++++||++|+..+++.+ ..+++.|++.++.|++.........
T Consensus 79 ~~~p~~~~le~~lA~l~g-~~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~------------- 142 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTG-ALGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTL------------- 142 (430)
T ss_dssp -CCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHH-------------
T ss_pred CCCHHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH-------------
Confidence 346777889999988885 455778889999999998753 4567889999999886544221000
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
...+..+..++.+|+++++++++ +++++|+++.++|++|.+.+ +++|.++|++||++||+|++|+ .+
T Consensus 143 ---~~~G~~~~~v~~~d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~---~~ 209 (430)
T 3ri6_A 143 ---PSFGIEVRFVDVMDSLAVEHACD---ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT---PP 209 (430)
T ss_dssp ---HHTTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS---CT
T ss_pred ---HHcCCEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc---cc
Confidence 00122455666669999998886 46889999999899999988 9999999999999999999997 22
Q ss_pred cCccccccCCCcchhhhhhhccC-Ccccccc-c--ccHHH------------------HHHhcCCCCcccccCCCCCHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-GLPVGAY-G--GRRDI------------------MEMVAPAGPMYQAGTLSGNPLA 290 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G~~~g~~-~--~~~~~------------------~~~~~~~~~~~~~~t~~~~~~~ 290 (411)
.......++.+..+.|++|+++| |..+|.+ + .+..+ ++..+.. .........+++.
T Consensus 210 ~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~--~~~~~g~~~~~~~ 287 (430)
T 3ri6_A 210 YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE--VFQNLGPSLSPHN 287 (430)
T ss_dssp TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT--HHHHHCCCCCHHH
T ss_pred ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH--HHHhcCCCCCHHH
Confidence 22222234555556689999996 5555554 4 22111 1221100 0011123346677
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-----------------eecc-eEEEEEecCCCCC
Q 015230 291 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-----------------YISG-MFGFFFTEGPVYN 352 (411)
Q Consensus 291 ~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------~~g~-~~~~~~~~~~~~~ 352 (411)
++.+...++.+. ...++..++..++.+.|++. |.+..+. +.|. +++|++.
T Consensus 288 a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~~----p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~------ 355 (430)
T 3ri6_A 288 AYLQSLGLETMA--LRIERSCQNAQELAHWLLSI----PQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE------ 355 (430)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC----TTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------
T ss_pred HHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhCC----CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC------
Confidence 766666665542 23455666777776666543 4333332 2356 9999984
Q ss_pred cchhcccchHHHHHHHHHHHHcCeEeccCCCcc---------------------------eeeecCCCHHHHHHHHHHHH
Q 015230 353 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~---------------------------~~~~~~~t~~~i~~~i~~l~ 405 (411)
....+.++.+.++..++.+..|+... +|++ ...|+.+.+++.|+
T Consensus 356 -------~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRls--vG~E~~~dl~~dl~ 426 (430)
T 3ri6_A 356 -------SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLS--VGIEEIEDLKEDIL 426 (430)
T ss_dssp -------SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEE--CCSSCHHHHHHHHH
T ss_pred -------CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE--eccCCHHHHHHHHH
Confidence 23445677777776677666664332 2333 33467788888888
Q ss_pred HHH
Q 015230 406 KVL 408 (411)
Q Consensus 406 ~~~ 408 (411)
+++
T Consensus 427 ~al 429 (430)
T 3ri6_A 427 QAL 429 (430)
T ss_dssp HHH
T ss_pred Hhh
Confidence 776
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-19 Score=167.70 Aligned_cols=313 Identities=14% Similarity=0.060 Sum_probs=179.5
Q ss_pred CcHHHHHHHHHHHHcCC--CCC------C---CCHHHHHHHHHHHhhCC-CCC---EEEEeCChHHHHHHHHHHHHhccC
Q 015230 53 ADDQVLAALGETMKKGT--SFG------A---PCLLENVLAEMVISAVP-SIE---MVRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~--~~~------~---~~~~~~~l~~~l~~~~~-~~~---~v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
.+|+|++|+.+.+.+.. ++. + ...+++...+++++.++ ..+ ..++++||++|+..++... ..+
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al--~~p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--LQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--CCS
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH--cCC
Confidence 68999999999887622 211 1 13445556688899997 333 3467779999999999743 456
Q ss_pred CcEEEEEeCCcCCCchh-------hhhhcCCCCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 118 RERIIKFEGCYHGHADP-------FLVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
++.|++.+..|.++... .....|......+++.. .+ .-|++++++.++.. ++++|+
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~-------------~iD~d~le~~l~~~--~~klIi 208 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTG-------------LIDYNQLALTARLF--RPRLII 208 (490)
T ss_dssp CEECCC-------------------------------CCBCTTTC-------------SBCHHHHHHHHHHH--CCSEEE
T ss_pred CCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccC-------------CcCHHHHHHHHhhc--CCcEEE
Confidence 67788877776543211 11223332222111111 11 11899999998743 345666
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchhhhhhhccCCccccccccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~ 265 (411)
+...+ .|...+ +++|+++|++||++|++|++|. |+ ..|.. ..++ +.+.-+.|++|+++ |.+.|+++++
T Consensus 209 ~~~s~--~~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~-Gp~GG~i~~~ 279 (490)
T 2a7v_A 209 AGTSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLR-GARSGLIFYR 279 (490)
T ss_dssp ECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGC-SCSCEEEEEE
T ss_pred EcCCC--CCCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCc-cccchheeec
Confidence 54322 233445 9999999999999999999985 65 33321 1121 22222447899996 4467888776
Q ss_pred HH---------------HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 266 RD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 266 ~~---------------~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
++ +.+.++.. .+.+.+.+++....++..+++..... ++..+++.++.+++.+.|++.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~i~~~--~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~--- 354 (490)
T 2a7v_A 280 KGVKAVDPKTGREIPYTFEDRINFA--VFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--- 354 (490)
T ss_dssp CSEEEEETTTEEEEECCCHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cchhcccccccchhhHHHHHHHHHH--hcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc---
Confidence 53 33333311 11111122344444444445554432 567788889999999999875
Q ss_pred cCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C-----Ccceeee------cC
Q 015230 328 AGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFTS------LA 391 (411)
Q Consensus 328 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~~------~~ 391 (411)
++.....+ ...++++++.... .+..++.+.|.+.||.+..+ . ...+|+. ..
T Consensus 355 -G~~v~~~~t~t~lv~vdl~~~g------------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 355 -GYSLVSGGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp -TCEEGGGSCSSSEEEEECTTTT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred -CcEEecCCCCCeEEEEEeCCCC------------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 32211111 2357777774321 12367888899999999742 1 1236762 35
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 015230 392 HSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~ 409 (411)
.+++|++++++.|.++++
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 689999999999988875
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=171.11 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+++....++.+.+++.++.. +.+++++|++|+..+++ . ..+++.|++.++.|++.........
T Consensus 64 ~~~p~~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~------------- 126 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGAK-YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVA------------- 126 (403)
T ss_dssp --CHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTG-------------
T ss_pred CCCchHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHH-------------
Confidence 34566677888888877544 55556678899999887 2 4567889999999987443221110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC-CEEEEecccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~-~~li~De~~~g~~~ 231 (411)
...+..+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++|| +++|+||+|+++..
T Consensus 127 ---~~~G~~v~~v~~~d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 127 ---SEFGLKISFVDCSKIKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp ---GGGTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred ---HHcCCEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc
Confidence 01123455666668999988886 46889999999999999998 999999999999 99999999985411
Q ss_pred ccCccccccCCCcchh--hhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 232 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~--~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
... .+..+|++ |++|++++ | .++|++++ ++++++.+.. .........+++.++++.+.++.+ +..
T Consensus 197 ~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~r 266 (403)
T 3cog_A 197 QRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF---LQNSLGAVPSPIDCYLCNRGLKTL--HVR 266 (403)
T ss_dssp CCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHH
T ss_pred CCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHH
Confidence 111 12344554 89999985 4 57999988 4777777652 112224456788887777666533 222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015230 307 YEYLNKITGELTQGIID 323 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~ 323 (411)
.++..++...+.+.+++
T Consensus 267 ~~~~~~n~~~l~~~l~~ 283 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLES 283 (403)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444455555555543
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-18 Score=163.48 Aligned_cols=302 Identities=11% Similarity=-0.007 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHhhCCCC-----------CEEEEeCChHHHHHHHHHHHHhcc----------------CCcEEEEEeCC
Q 015230 75 CLLENVLAEMVISAVPSI-----------EMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGC 127 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~-----------~~v~~~~~g~~a~~~al~~~~~~~----------------~~~~vi~~~~~ 127 (411)
.++++++.+|+.+.++-+ ...++|+|||+|+..++.+++... .++.+++.+..
T Consensus 117 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~ 196 (481)
T 4e1o_A 117 TELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCc
Confidence 577889999999988622 367999999999999998775421 02334444555
Q ss_pred cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHH
Q 015230 128 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.|.....+....|..++.++......+ |+++|++++++. ...+.+++++..++++|.+.+
T Consensus 197 ~H~s~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~--- 259 (481)
T 4e1o_A 197 AHSSVEKAGLISLVKMKFLPVDDNFSL--------------RGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC--- 259 (481)
T ss_dssp SCHHHHHHHHHHTCEEEEECCCTTSCC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---
T ss_pred chHHHHHHHHhCCCceEEEEcCCCCcC--------------CHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---
Confidence 554555555566666665554322122 899999999753 123667777777788898888
Q ss_pred HHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCcccccccc-cHHHHHHhcCCCCcc
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMY 279 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~ 279 (411)
+++|.++|++||+++++|++|.+. .....+.....++ ..|.+ +.+|++++..-.|+++. ++..+.........+
T Consensus 260 -l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~y 338 (481)
T 4e1o_A 260 -LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIY 338 (481)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGG
T ss_pred -HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchh
Confidence 999999999999999999999754 3222111111232 13544 57899986444666644 444433221111111
Q ss_pred ccc----------------CCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEE
Q 015230 280 QAG----------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFG 342 (411)
Q Consensus 280 ~~~----------------t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~ 342 (411)
... +.....+.+.+++..+..-.-++++++..++.+++.+.|+++ +.... ......+++
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~ 414 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----PSFEIPAKRHLGLVV 414 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTEECCSCCCSSEEE
T ss_pred ccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEE
Confidence 110 111234444444444321111566777888888888888764 22111 122345667
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcCeE-eccC---CCcceeee---cCCCHHHHHHHHHHHHHHHHh
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFTS---LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~---~~~~~~~~---~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|.+.. ......++.+.|.++|++ +.+. +...+|++ ..+|+++|++++++|++++++
T Consensus 415 f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 415 FRLKG------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp EEESS------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCC------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 76632 233457889999998844 4432 22346764 455899999999999988765
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=163.03 Aligned_cols=314 Identities=11% Similarity=0.055 Sum_probs=192.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-HhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMV-ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
.++++++++.+.++.+. +........++.+.+ ++.++..+++++++||++|+..+++.+ ...+++.||+..++|++.
T Consensus 14 ~~~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-~~~~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-KRKKGKYALMPSFTFPAT 91 (377)
T ss_dssp CGGGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-SCTTCCEEEEESSSCTHH
T ss_pred CcHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence 56788999999998854 222245567888888 777753788999999999999999753 245678899999988864
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
. .+....|..+..++.....+.. |++++++++.....++++|+. + +.+|...+ +++|.+
T Consensus 92 ~-~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~~~~~~tk~v~~--~-~~~G~~~~----~~~i~~ 150 (377)
T 3ju7_A 92 P-LAAIWCGLEPYFIDISIDDWYM-------------DKTVLWDKIEELKEEVAIVVP--Y-ATFGSWMN----LEEYEE 150 (377)
T ss_dssp H-HHHHHTTCEEEEECBCTTTCSB-------------CHHHHHHHHHHHGGGEEEECC--B-CGGGBCCC----CHHHHH
T ss_pred H-HHHHHcCCEEEEEecCCccCCc-------------CHHHHHHHHhcCCCCceEEEE--E-CCCCCccC----HHHHHH
Confidence 3 3344445544443332111111 899999988321112777763 3 34677777 899999
Q ss_pred HHHHhCCEEEEeccccccccccCcccccc-CCCcc--hhhh--hhhccCCcccccccc-cHHHHHHhcCCCC--------
Q 015230 212 ITKENGALLIFDEVMTGFRLAYGGAQEYF-GVTPD--LTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGP-------- 277 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~~~g~~~~~~~~-~~~~d--~~~~--sK~~~~G~~~g~~~~-~~~~~~~~~~~~~-------- 277 (411)
+|+ ||++||+|++|+ .|........ +...| +.|| +|.+++| ..|+++. ++++.+.++....
T Consensus 151 la~-~~~~vi~D~a~a---~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~ 225 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPG---FGLMNGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRE 225 (377)
T ss_dssp HHH-TTCCBEEECTTC---TTCEETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTSC
T ss_pred HHh-cCCEEEEECCCc---cCCeECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCCc
Confidence 999 999999999997 1111111112 11123 3444 4998864 5666654 5666655542111
Q ss_pred -cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh-cCCceEEeeec--ceEEEEEecCCCCCc
Q 015230 278 -MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGYIS--GMFGFFFTEGPVYNF 353 (411)
Q Consensus 278 -~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~g--~~~~~~~~~~~~~~~ 353 (411)
...+..+..+.+.++.+...++.+ ++..++.+++.+++.+.|+++..- .+......... .++.+.+.
T Consensus 226 ~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 296 (377)
T 3ju7_A 226 CTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCP------- 296 (377)
T ss_dssp BCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECC-------
T ss_pred eeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeC-------
Confidence 011234566778777777766544 445677778888888888775210 11111000001 12233321
Q ss_pred chhcccchHHHHHHHHHHHHcCeEeccCCCc-------------------------ceeee--cCCCHHHHHHHHHHHHH
Q 015230 354 EDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-------------------------~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
.....+.+.+.|.++||.+...... .+++| ...|++|++++++.|++
T Consensus 297 ------~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 297 ------EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp ------TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred ------ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 1112478999999999988765311 04554 46699999999999987
Q ss_pred HHH
Q 015230 407 VLR 409 (411)
Q Consensus 407 ~~~ 409 (411)
++.
T Consensus 371 ~~~ 373 (377)
T 3ju7_A 371 KVV 373 (377)
T ss_dssp ---
T ss_pred HHh
Confidence 754
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=161.32 Aligned_cols=314 Identities=13% Similarity=0.021 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhcc-------C----CcEEEEEeCCcCCCchhhhhhcC
Q 015230 75 CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT-------G----RERIIKFEGCYHGHADPFLVKAG 140 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~~-------~----~~~vi~~~~~~~~~~~~~~~~~g 140 (411)
.++++++.+|+++.++ . .+.++||+||++|+..++..++... + ++.+|+.+...|.....+....|
T Consensus 134 ~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g 213 (511)
T 3vp6_A 134 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG 213 (511)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcC
Confidence 5667889999999887 3 4699999999999999998765421 1 24445555555555555555555
Q ss_pred C---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHH
Q 015230 141 S---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 214 (411)
Q Consensus 141 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~ 214 (411)
. .+..++......+ |+++|++++++. ...+++|+++.+++++|.+.+ +++|.++|+
T Consensus 214 ~g~~~~~~v~~d~~~~~--------------d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~ 275 (511)
T 3vp6_A 214 FGTDNVILIKCNERGKI--------------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICE 275 (511)
T ss_dssp SCGGGEEEECBCTTSCB--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHH
T ss_pred CCCCcEEEeecCCCCcc--------------CHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHH
Confidence 5 3333332211111 899999999752 223788888888888999987 999999999
Q ss_pred HhCCEEEEecccccc-ccccCccccccCC-Ccch--hhhhhhccCCcccccccc-cHHHHHHhcCCCCccccc-------
Q 015230 215 ENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDL--TTLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAG------- 282 (411)
Q Consensus 215 ~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~--~~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~~~~------- 282 (411)
+||+++++|++|++. .....+.....++ ..|. .+.+|++++..-.|+++. ++.++.......+.+...
T Consensus 276 ~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 355 (511)
T 3vp6_A 276 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDV 355 (511)
T ss_dssp HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCG
T ss_pred HcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccccccc
Confidence 999999999999854 3222111111122 2354 367899986445777755 444544432111111110
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE---eeecceEEEEEecC
Q 015230 283 -----------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISGMFGFFFTEG 348 (411)
Q Consensus 283 -----------t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~g~~~~~~~~~~ 348 (411)
+-....+.+.+++..+..-.-++++++..++.+++++.|+++ +..... .+...++.|.+...
T Consensus 356 ~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----pg~~l~~~~~p~~~~v~f~~~p~ 431 (511)
T 3vp6_A 356 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQ 431 (511)
T ss_dssp GGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----TTEEESSSSCCSSSCEEEEECCG
T ss_pred ccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCc
Confidence 001233444444444321111567788888888888888764 222111 13345566655322
Q ss_pred CCCCcchh---cccchHHHHHHHHHHHHcCeEeccC-----CCcceee---ecCCCHHHHHHHHHHHHHHHHh
Q 015230 349 PVYNFEDA---KKSETTKFARFYRGMLEEGVYFAPS-----QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 349 ~~~~~~~~---~~~~~~~~~~~~~~l~~~Gi~v~~~-----~~~~~~~---~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
........ .........++.+.|.++|+++... +...+|+ +..+++++|+.+++.|+++-+.
T Consensus 432 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 432 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp GGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 11110000 0000112347889999998654331 1124676 3567999999999999987554
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-20 Score=176.70 Aligned_cols=287 Identities=11% Similarity=-0.014 Sum_probs=174.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
+.....++.+++++ ++..+.+++++|+++|+..+++.+ ..+++.|++..++|++... ++...|..+..++......
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~~~-~~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSVLH-ALDISQQEGHFIETHQSPL 130 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHHHH-HHHHHTCCEEECEEEECTT
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHHHH-HHHHcCCeEEEEeCeeccc
Confidence 45667888888888 864478899999999999999853 3456788888888776544 4444565544433210111
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g 232 (411)
. + ..... |++++ +. .+++++++++ .+++|.+.+ +++|.++|++||+++|+||+|++. ..+
T Consensus 131 ~----~-~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 131 T----N-HYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp T----S-SEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred c----C-cCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 0 0 00111 34444 22 2456666666 444888888 999999999999999999999853 222
Q ss_pred c-CccccccCCCcchh--hhhhhccCCcccccccccHHHHH--HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC--C
Q 015230 233 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME--MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--G 305 (411)
Q Consensus 233 ~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~--~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~--~ 305 (411)
. ......+ .+|++ |++|+++++.++|++++++++++ .+... .....+.+.+...+++..++++.++.. +
T Consensus 192 ~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~--~~~~~~~s~~~~~~aal~~a~~~l~~~g~~ 267 (446)
T 2x3l_A 192 GFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEY--LSYFQTSSPSYLIMASLESAAQFYKTYDST 267 (446)
T ss_dssp TSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHH--HHHHSCSSCCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHH--HHHHcCCCchHHHHHHHHHHHHHHHHhCHH
Confidence 2 1222222 34554 67898887667899988766543 22210 011224445666666655666666542 2
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc
Q 015230 306 -TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 384 (411)
Q Consensus 306 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 384 (411)
+.++.+++.+++++. ++.......+..+++.+.. ....++.+.|.++||.+...+.+
T Consensus 268 ~~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~~--------------~~~~~l~~~L~~~GI~v~~~g~~ 325 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYEG--------------FTGHDIQNWFMNAHIYLELADDY 325 (446)
T ss_dssp HHHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECTT--------------SCHHHHHHHHHHTTEEESEECSS
T ss_pred HHHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeCC--------------cCHHHHHHHHHHCCCEEEecCCC
Confidence 555555555555554 2221111223456666531 11367889999999999834445
Q ss_pred ceeeec--CCCHHHHHHHHHHHHHHHHh
Q 015230 385 AGFTSL--AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 385 ~~~~~~--~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|+.+ ..|++++ +++++|++++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 677754 4589999 999999988754
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=168.06 Aligned_cols=321 Identities=12% Similarity=0.002 Sum_probs=195.6
Q ss_pred CcHHHHHHHHHHHHcCCC-C-CC--CCHHHHHHHHHHHhhCC-C--CC---EEEEeCChHHHHHHHHHHHHhc-c-----
Q 015230 53 ADDQVLAALGETMKKGTS-F-GA--PCLLENVLAEMVISAVP-S--IE---MVRFVNSGTEACMGVLRLARAF-T----- 116 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-~-~~--~~~~~~~l~~~l~~~~~-~--~~---~v~~~~~g~~a~~~al~~~~~~-~----- 116 (411)
.+|.+.+++.+.+..... + .+ ..++++++.+++++.++ . .+ ..++|+||++|+..++..++.. .
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 688999999888776321 1 11 25566788899999987 3 33 3356999999999998765322 0
Q ss_pred -C----CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc
Q 015230 117 -G----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 191 (411)
Q Consensus 117 -~----~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~ 191 (411)
+ +..|++..++|. .+..+....|.++..++.....+.. |+++++++++. ++++|+++.
T Consensus 148 ~G~~~~~~~vi~~~~~h~-s~~~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~~---~t~~v~~~~ 210 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANVQV-CWEKFARYFEVELKEVKLSEGYYVM-------------DPQQAVDMVDE---NTICVAAIL 210 (502)
T ss_dssp TTCCCSCCEEEEETTCCH-HHHHHHHHTTCEEEEECCBTTBCSC-------------CHHHHHHHCCT---TEEEEEEEB
T ss_pred cCCCCCCcEEEEcCCchH-HHHHHHHHcCceeEEEecCCCcCcC-------------CHHHHHHHHhh---CCEEEEEec
Confidence 1 126666655544 4455555566655554432211111 89999998873 567777777
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHh------CCEEEEecccccc-c--cccCccccccCCCcchh--hhhhhccCCcccc
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVG 260 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~------~~~li~De~~~g~-~--~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g 260 (411)
+++++|.+.+ +++|.++|++| |+++++|++|+++ . .......+..-...|.+ +..|++.++..+|
T Consensus 211 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G 286 (502)
T 3hbx_A 211 GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIG 286 (502)
T ss_dssp SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeE
Confidence 7777898888 99999999999 9999999999865 2 11111111111134544 5678887767788
Q ss_pred ccccc-HHHH-HHhcCCCCccccc-------CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 261 AYGGR-RDIM-EMVAPAGPMYQAG-------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 261 ~~~~~-~~~~-~~~~~~~~~~~~~-------t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+++.+ ++.+ +.+. ....+.+. .++.+.....+..+++..+.. ++..++..++.+++.+.|+++
T Consensus 287 ~~~~~~~~~l~~~~~-~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---- 361 (502)
T 3hbx_A 287 WVIWRNKEDLPEELI-FHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT---- 361 (502)
T ss_dssp EEEESSGGGSCGGGC-EEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred EEEEeCHHHhhHHhc-cCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 87554 4443 2221 00111110 122222223333334443322 455677777777887777765
Q ss_pred CCceEEe--eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceee--ecCCCHHHH
Q 015230 329 GHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLAHSSDDI 397 (411)
Q Consensus 329 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~--~~~~t~~~i 397 (411)
+...... ....++.|.+.+.. ......+.+.|.++|+++..... ..+|+ ...+|++++
T Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 362 ERFNIVSKDEGVPLVAFSLKDSS-----------CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp TCEEECSCSSSSSEEEEEESSCS-----------SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred CCEEEEeCCCCceEEEEEecCCC-----------cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHH
Confidence 3222121 24557777774321 11225789999999998754321 23566 456799999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
+.+++.|++++++
T Consensus 431 d~li~~L~~~l~~ 443 (502)
T 3hbx_A 431 ERLVIDIEKVMRE 443 (502)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-18 Score=161.66 Aligned_cols=301 Identities=10% Similarity=-0.000 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHhhCCCC----------CEEEEeCChHHHHHHHHHHHHhcc-------C---------CcEEEEEeCCc
Q 015230 75 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCY 128 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~----------~~v~~~~~g~~a~~~al~~~~~~~-------~---------~~~vi~~~~~~ 128 (411)
.++++++.+|+++.++-+ ...+||+|||+|+..++..++... + ++.+|+.+...
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 567888999999998733 268999999999999998775321 1 12344445555
Q ss_pred CCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHH
Q 015230 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDF 205 (411)
Q Consensus 129 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~ 205 (411)
|.....+....|..+..++.... ++ |+++|++++++. ...+.++++...++++|.+.+
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~~-~~--------------d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---- 252 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSENH-RM--------------RGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---- 252 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBTT-BC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred hHHHHHHHHHcCCceEEEECCCC-Cc--------------CHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----
Confidence 54555555566766666554322 22 999999999753 123666777777777899888
Q ss_pred HHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCccccccccc-HHHH-HHhcCCCCcc
Q 015230 206 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGR-RDIM-EMVAPAGPMY 279 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~~g~~~~~-~~~~-~~~~~~~~~~ 279 (411)
+++|.++|++||+++++|++|.+. ...........++ ..|.+ +.+|++++...+|+++.+ +..+ +.+.....++
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 332 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL 332 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcccc
Confidence 999999999999999999999754 2221111111122 23544 578999864446776554 3332 2221100110
Q ss_pred ccc-----------CC-C---CCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEE
Q 015230 280 QAG-----------TL-S---GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGF 343 (411)
Q Consensus 280 ~~~-----------t~-~---~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~ 343 (411)
... +. . ...+.+.+++..+..-.-++++++..++.+++.+.|+++ +.... ......+++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~iv~f 408 (475)
T 3k40_A 333 KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMGLVCF 408 (475)
T ss_dssp ----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTTEEEE
T ss_pred CCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEE
Confidence 000 00 0 123333333333321111566777888888888888775 22211 1233556677
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe-ccC---CCcceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-~~~---~~~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.. ......++.+.|.++|.++ .+. +...+|+++ .+|+++|++++++|++++++
T Consensus 409 ~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 409 RLKG------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCC------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6632 2334578889999887654 322 233467753 46899999999999998765
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=163.17 Aligned_cols=289 Identities=13% Similarity=0.052 Sum_probs=174.6
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEE--EeCChHHHHHHHHHHHHhccCCcEEEEE
Q 015230 53 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKF 124 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~--~~~~g~~a~~~al~~~~~~~~~~~vi~~ 124 (411)
+++++++++.+.... ...+.|....++++.+++++.++...... +++||++|+..+++. ...+++.|++.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~a--l~~~Gd~Vl~~ 113 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFG--ILRPGDELLYI 113 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHT--TCCTTCEEEEC
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHH--hCCCCCEEEEe
Confidence 466777777664221 12355667888999999999996322222 144899999999873 23456778887
Q ss_pred eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-----CCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCc
Q 015230 125 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP-VVGNSGF 198 (411)
Q Consensus 125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~ 198 (411)
++..|+.+.....++|. ........+..+..++. .|+++++++++ +++++|++++ .++.+|.
T Consensus 114 ~~~~y~~~~~~~~l~g~---------~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~ 181 (431)
T 3ht4_A 114 TGKPYDTLEEIVGVRGK---------GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRP 181 (431)
T ss_dssp SSSCCTTHHHHTTSSSC---------SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSC
T ss_pred CCCCchhHHHHHhhccc---------ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCC
Confidence 73444444433332221 00011111223333333 28999999886 4688888885 4433443
Q ss_pred cCCCHHHHHHHHHHHHH--hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC--cccccccccHHHHHHhc
Q 015230 199 IAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G--~~~g~~~~~~~~~~~~~ 273 (411)
..+.+.+++|.++|++ ||+++|+||+|+.+ ...... .++.+..+.|++|+++|| .+.|++++++++++.+.
T Consensus 182 -~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 182 -SFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 3344449999999999 99999999999865 332221 224445566899999874 56788899999888775
Q ss_pred CCC-CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeecceEEEEEecCCCC
Q 015230 274 PAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVY 351 (411)
Q Consensus 274 ~~~-~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~ 351 (411)
... ....+.+.+.+...+.++.+.++.+ +..+++..++..++.+.|+++..+. |. ...++.+.++.+.+
T Consensus 258 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l------ 328 (431)
T 3ht4_A 258 YRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQF------ 328 (431)
T ss_dssp HHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEEC------
T ss_pred HHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEe------
Confidence 310 1111112222222233344444433 4456778889999999998874321 11 11123345677766
Q ss_pred CcchhcccchHHHHHHHHHHHHcC
Q 015230 352 NFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
++.+.+.++++.|.+..
T Consensus 329 -------~~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 329 -------DDKDRMIAFCQAIQYAS 345 (431)
T ss_dssp -------CCHHHHHHHHHHHHHTS
T ss_pred -------CCHHHHHHHHHHHHhcC
Confidence 33456678999998873
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=170.70 Aligned_cols=318 Identities=10% Similarity=-0.044 Sum_probs=191.1
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHc-CC-C--CC----C---CCHHHHHHHHHHHhhCC---CCCEEEEeCC
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GT-S--FG----A---PCLLENVLAEMVISAVP---SIEMVRFVNS 100 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~~-~--~~----~---~~~~~~~l~~~l~~~~~---~~~~v~~~~~ 100 (411)
.+.++||..+. ..+. .++.+++++.+++.. +. . |. + ..++++.+++++.+..+ .+++|++|+|
T Consensus 55 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 55 QGCSADVASGD--GLFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp TTCCEECCSCC--CGGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCceEEecCcC--CCCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 34567877763 2222 456677777777632 21 1 32 2 45677888888876543 4789999999
Q ss_pred hHHHHHHHHHHHHh------ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 101 GTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 101 g~~a~~~al~~~~~------~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
+++++..++..... ..+++.|++.++.|.+.. ......|..+.. ... |+++++
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~-~~~~~~g~~~~~-----------------~~~---d~~~l~ 190 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR-EQTKYFDKKGYV-----------------WAG---NAANYV 190 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH-HHHHHSCBTTEE-----------------EEE---EGGGGT
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHH-HHHHHcCCeeee-----------------ecC---CHHHHH
Confidence 99999999975310 345678888888886533 333333332110 111 566666
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG 254 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~ 254 (411)
+.++. ++++++++..+|++|.+.+ +.+ + ++..+.|+++.+ ......... .+...-+.||||.++
T Consensus 191 ~~~~~---~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~-~~~s~~~~~-~~~~i~~~S~SK~~g 254 (427)
T 2hox_A 191 NVSNP---EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW-PHYTPIKYK-ADEDILLFTMSKFTG 254 (427)
T ss_dssp TCSCG---GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS-TTTSCCCSC-BCCSEEEEEHHHHTS
T ss_pred HhhcC---CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC-CCCCccccC-CCceEEEEeChhcCC
Confidence 65542 4455555444555666555 212 2 556777877642 000111111 223333569999998
Q ss_pred -CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh---------cCC----hHHHHHHHHHHHHH
Q 015230 255 -GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---------EPG----TYEYLNKITGELTQ 319 (411)
Q Consensus 255 -~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~---------~~~----~~~~~~~~~~~~~~ 319 (411)
.|+|+||+++ ++++++.+.. .....+++.+.+++.++.++++... .++ .+++++++.+++.+
T Consensus 255 ~~G~RiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (427)
T 2hox_A 255 HSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITA 331 (427)
T ss_dssp CGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7999999988 5888888763 2222345678888888877776431 133 33455555555555
Q ss_pred HHHHH-HHhc-----C-----CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----
Q 015230 320 GIIDA-GKKA-----G-----HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----- 382 (411)
Q Consensus 320 ~l~~~-~~~~-----~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----- 382 (411)
.|+++ .... + ........|+++|+++... ..++.+.+ .++||.+.++.
T Consensus 332 ~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~---------------~~~~~~~ll~~~gI~v~pg~~f~~~ 396 (427)
T 2hox_A 332 LLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE---------------EDKDCYQTFQNGRINTQNGVGFEAS 396 (427)
T ss_dssp HHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG---------------GGCSHHHHHHHTTEECEEGGGGTSC
T ss_pred HHHhCcCccccccccccccccccccCCCCceEEEEECCCc---------------HHHHHHHHHHHCCEEEcCCCccCCC
Confidence 55443 0000 0 0112233488899988431 13455555 57899999873
Q ss_pred CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 383 FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+|+++..+++++++++++|.+++++
T Consensus 397 ~~~~Ris~~~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 397 SRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp TTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 3458999888999999999999998753
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-17 Score=157.56 Aligned_cols=319 Identities=11% Similarity=-0.044 Sum_probs=188.0
Q ss_pred HHHHHHHHHHcCC-CCC-C--CCHHHHHHHHHHHhhCC-CC---------CEEEEeCChHHHHHHHHHHHHhc--c----
Q 015230 57 VLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVP-SI---------EMVRFVNSGTEACMGVLRLARAF--T---- 116 (411)
Q Consensus 57 v~~a~~~~l~~~~-~~~-~--~~~~~~~l~~~l~~~~~-~~---------~~v~~~~~g~~a~~~al~~~~~~--~---- 116 (411)
+.+++..++.... .+. + ..++++++++++++.++ .. ..+++|+|||+|+..++..++.. .
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5555666654421 111 1 25667788999999987 32 46899999999999999766432 1
Q ss_pred --C--------CcE-EEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---C
Q 015230 117 --G--------RER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---G 182 (411)
Q Consensus 117 --~--------~~~-vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~ 182 (411)
+ ++. |++.+.+|+ ....+....|.++..++... .+.. |+++|++++++.. .
T Consensus 170 ~~gd~~~~~~~~~~~v~~s~~~h~-s~~~~~~~~G~~v~~v~~d~-~~~~-------------d~~~L~~~i~~~~~~g~ 234 (486)
T 1js3_A 170 ASPGLTQGAVLEKLVAYASDQAHS-SVERAGLIGGVKLKAIPSDG-KFAM-------------RASALQEALERDKAAGL 234 (486)
T ss_dssp HSTTCCHHHHHHHEEEEEETTCCH-HHHHHHHHHTCEEEEECCCT-TSCC-------------CHHHHHHHHHHHHHTTC
T ss_pred cCccchhcccCCCEEEEECCCCcH-HHHHHHHhCCCceEEeecCC-CCCC-------------CHHHHHHHHHHHHhCCC
Confidence 1 122 445555554 44555555666665554421 1111 8999999997521 1
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCcc
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLP 258 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~ 258 (411)
.+.+|++...++++|.+.+ +++|.++|++||+++++|++|+++ .....+.....++ ..|.+ +.+|++++.++
T Consensus 235 ~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~ 310 (486)
T 1js3_A 235 IPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310 (486)
T ss_dssp EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred CceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc
Confidence 2346666666677888877 999999999999999999999864 2221111001121 23443 57899986677
Q ss_pred cccccccH-HH-HHHhcCCCCcccc-----------------cCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 259 VGAYGGRR-DI-MEMVAPAGPMYQA-----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 259 ~g~~~~~~-~~-~~~~~~~~~~~~~-----------------~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+|+++.++ .. .+.+......... .+.....+++.+++..+..-.-+++.++..++.+++.+
T Consensus 311 ~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 390 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (486)
T ss_dssp CEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99987754 33 4444211111100 01112344444444433211115566777778888888
Q ss_pred HHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----CCcceeeec---C
Q 015230 320 GIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFTSL---A 391 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~~~~~~~~~---~ 391 (411)
.|+++ +..... ...+.++.|.+.. ......++.+.|.++|+++... +...+|+++ .
T Consensus 391 ~L~~~----~~~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 391 FVLQD----PRFEVCAEVTLGLVCFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHC----TTEEECSCCCSSEEEEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHhcC----CCeEEeCCCceeEEEEEecC------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 88764 222111 1234555665521 1122367888898888654332 223567753 3
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
+|++++++++++|++++++
T Consensus 455 ~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5899999999999988764
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=162.80 Aligned_cols=217 Identities=10% Similarity=-0.002 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++.+.+++..+ .+++++++||++|+..+++.. ..+++.||+..+.|++.........
T Consensus 80 ~~p~~~~le~~lA~l~g-~~~~i~~ssGt~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~l-------------- 142 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEG-GAGCVLFPCGAAAVANSILAF--IEQGDHVLMTNTAYEPSQDFCSKIL-------------- 142 (415)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CCchHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHH--------------
Confidence 46677888888888875 456777899999999998732 3456789999888886433221100
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFRL 231 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~~~ 231 (411)
...+.++..++.+|+++++++++ +++++|+++.++|++|.+.+ +++|.++|++ ||+++|+|++|+....
T Consensus 143 --~~~G~~v~~v~~~d~~~le~ai~---~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~~~ 213 (415)
T 2fq6_A 143 --SKLGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAGVL 213 (415)
T ss_dssp --GGGTCEEEEECTTCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTTTS
T ss_pred --HHcCcEEEEECCCCHHHHHHhhc---cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCccccc
Confidence 00122445556668888888876 36889999999999999998 9999999999 9999999999972211
Q ss_pred ccCccccccCCCcchhhhhhhccC-Ccc-cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~-G~~-~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
... . .++.+.-+.|++|.+++ |.+ .|++++++++++.+.... .......++..++.+...++.+ +...++
T Consensus 214 ~~p--~-~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~---~~~G~~~~~~~a~~~~~~l~~l--~~r~~~ 285 (415)
T 2fq6_A 214 FKA--L-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA---YLMGQMVDADTAYITSRGLRTL--GVRLRQ 285 (415)
T ss_dssp SCG--G-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH---HHTTCCCCHHHHHHHHHHHHHH--HHHHHH
T ss_pred CCc--c-ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhhhhHH--HHHHHH
Confidence 111 1 12332223489999995 544 688888877777665211 1112234566555555555544 233455
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDA 324 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~ 324 (411)
..++...+.+.|++.
T Consensus 286 ~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 286 HHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 566667777776654
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=155.01 Aligned_cols=276 Identities=15% Similarity=0.112 Sum_probs=171.9
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEEE---eCChHHHHHHHHHHHHhccCCcEEEE
Q 015230 53 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 123 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~---~~~g~~a~~~al~~~~~~~~~~~vi~ 123 (411)
++.++++++.++... ...+.|...-++++.+.+++.++ .+..++ ++||++|+..++... ..+++.|++
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g-~e~alv~p~~~sGt~Ai~~al~al--l~~GD~Vl~ 106 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFK-TEAALVRPQIISGTHAISTVLFGI--LRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHT-CSEEEEETTSCSHHHHHHHHHHHH--CCTTCEEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhC-CCcEEEECCCccHHHHHHHHHHHh--cCCCCEEEE
Confidence 456778888775421 12355666667888888888885 445555 889999999988743 455677888
Q ss_pred Ee-CCcCCCchh---------hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc--
Q 015230 124 FE-GCYHGHADP---------FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP-- 191 (411)
Q Consensus 124 ~~-~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~-- 191 (411)
.+ +.|.+.... .+...|..+..++... .+. .|+++++++++ +++++|++++
T Consensus 107 ~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~-~g~-------------~d~e~l~~ai~---~~tklV~i~~s~ 169 (409)
T 3jzl_A 107 ITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE-NGD-------------VDFPRIAKKMT---PKTKMIGIQRSR 169 (409)
T ss_dssp CSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT-TSC-------------CCHHHHHHHCC---TTEEEEEEECSC
T ss_pred eCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC-CCC-------------cCHHHHHHhcc---CCCeEEEEECCC
Confidence 77 666543221 1111222222221111 110 28999998886 4688999998
Q ss_pred --cCCCCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC-cc-cccccc
Q 015230 192 --VVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LP-VGAYGG 264 (411)
Q Consensus 192 --~~~~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~-~g~~~~ 264 (411)
++|++|.+.+ +++|.++|++ ||+++++||+|+.+ ...... .++.+.-+.|++|.++++ .+ .|++++
T Consensus 170 g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~---~~g~Div~~S~sK~lgg~~~~~GG~v~~ 242 (409)
T 3jzl_A 170 GYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP---EVGADIIAGSLIKNPGGGLAKTGGYIAG 242 (409)
T ss_dssp TTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG---GGTCSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred CCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCcc---ccCCeEEEECccccCCccCCceEEEEEe
Confidence 8888888877 9999999999 99999999999743 111111 123333345899999964 34 688899
Q ss_pred cHHHHHHhcC--CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE----eeec
Q 015230 265 RRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG----GYIS 338 (411)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~g 338 (411)
++++++.+.. ..+.. +...+.....+.++...++.+ +..+++..++..++.+.|+++ +....+ .+..
T Consensus 243 ~~~li~~l~~~~~~~~~-g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~v~p~~~~~~~~ 315 (409)
T 3jzl_A 243 KEALVDLCGYRLTTPGI-GREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF----GVEADPVWDAPRTD 315 (409)
T ss_dssp CHHHHHHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSS
T ss_pred CHHHHHHHHHHhccccc-cccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCCcc
Confidence 9999888763 11111 112222221123334444332 456677888888898888876 322111 1112
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
.++.+.+ ++.+.+.++++.|++..
T Consensus 316 ~i~~i~l-------------~~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 316 LIQSVSF-------------HNKEKMVAFAQAIQAAS 339 (409)
T ss_dssp SCCEEEC-------------SCHHHHHHHHHHHHHTS
T ss_pred EEEEEEe-------------CCHHHHHHHHHHHHhcC
Confidence 2566655 34566788999999874
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=160.51 Aligned_cols=302 Identities=8% Similarity=-0.078 Sum_probs=183.2
Q ss_pred CcHHHHHHHHHHHHcCCC--CCCC--CHHHHHHHHHHHhhCC-C-CCEEEE-eCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 53 ADDQVLAALGETMKKGTS--FGAP--CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~--~~~~--~~~~~~l~~~l~~~~~-~-~~~v~~-~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.+|++++++.+....... ..++ .+..+++.+++++.++ . .+++++ |+||++|+..+++.+ .+++ +++..
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l---~~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL---IDKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT---CSSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh---cCCC-eEEEe
Confidence 678888888763111111 1122 2346789999999997 3 368998 999999999999853 2334 23335
Q ss_pred CCcCCCchh-hhhhc--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCC
Q 015230 126 GCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 202 (411)
Q Consensus 126 ~~~~~~~~~-~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~ 202 (411)
.++|+.... ..... |..+..++.+ .+... +.+ + .+++++|++..++|++|.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~------------~~~-----i---~~~~~~v~~~~~~nptG~~~~- 183 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSD--PGSAP------------EPQ-----T---DPSVDVIAWAHNETSTGVAVA- 183 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCC------------CCC-----C---CTTCSEEEEESEETTTTEECC-
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecC--CCCCC------------Ccc-----c---cCCCCEEEEeCcCCCcceecc-
Confidence 555532111 11222 3333333222 11110 110 1 235677777777788888888
Q ss_pred HHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCC----
Q 015230 203 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA---- 275 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~---- 275 (411)
+++|.++ ||+++|+||+|+.+ .. .... + +|++ +++|+++++.++|++++++++++.+...
T Consensus 184 ---~~~i~~~---~~~~vivD~a~~~~~~~---~~~~--~--~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~ 250 (398)
T 2fyf_A 184 ---VRRPEGS---DDALVVIDATSGAGGLP---VDIA--E--TDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATG 250 (398)
T ss_dssp ---CCCCTTC---C-CEEEEECTTTTTTSC---CCGG--G--CSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTT
T ss_pred ---hHHhhhh---cCCeEEEEeccccCCcc---cCcc--c--CcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccC
Confidence 5555555 89999999999743 21 1111 2 4544 7889998543589999999888766310
Q ss_pred ---CCcc-----------cccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEE---
Q 015230 276 ---GPMY-----------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG--- 334 (411)
Q Consensus 276 ---~~~~-----------~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--- 334 (411)
...+ .....+.+..+++++.++++.+.+ ++++++.+++.+++.+.|+++ +.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~ 326 (398)
T 2fyf_A 251 RWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPFVTD 326 (398)
T ss_dssp CCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEESCCS
T ss_pred CCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceeccCC
Confidence 0000 011235566777777777775543 345666777777777777664 211111
Q ss_pred e--eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecC--CCHHHHHHHHHHHHH
Q 015230 335 G--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEK 406 (411)
Q Consensus 335 ~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~--~t~~~i~~~i~~l~~ 406 (411)
. ..+.++++.+.. ..+..++.+.|.++||.+.++. ...+|+++. +|++++++++++|++
T Consensus 327 ~~~~~~~~~~~~~~~-------------~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 393 (398)
T 2fyf_A 327 PGLRSQVVGTIDFVD-------------DVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDW 393 (398)
T ss_dssp GGGBCSSEEEEEECT-------------TSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hhhcCCcEEEEECCC-------------CCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 1 123488887732 1123678999999999998752 245888654 699999999999999
Q ss_pred HHHhC
Q 015230 407 VLRQI 411 (411)
Q Consensus 407 ~~~~~ 411 (411)
+++++
T Consensus 394 ~l~~~ 398 (398)
T 2fyf_A 394 VVERL 398 (398)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 98764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-17 Score=152.96 Aligned_cols=282 Identities=16% Similarity=0.113 Sum_probs=171.1
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEEE---eCChHHHHHHHHHHHHhccCCcEEEE
Q 015230 53 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 123 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~---~~~g~~a~~~al~~~~~~~~~~~vi~ 123 (411)
+++++++++.+.... ...+.|...-.+++.+.+++.++ .+..++ ++||++|+..++.. ...+++.|++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g-~e~alv~p~~~sGt~A~~~al~a--ll~pGD~Vl~ 121 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFN-TESAFVRPHFVNGTHAIGAALFG--NLRPNDTMMS 121 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT-CSEEEEETTCCSHHHHHHHHHHH--TCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhC-CCceEEeCCCCcHHHHHHHHHHH--hcCCCCEEEE
Confidence 456777777665332 12355666667888888888885 444555 88999999988874 2456778888
Q ss_pred Ee-CCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC----CCHHHHHHHHHcCCCcEEEEEEcc----cCC
Q 015230 124 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILEP----VVG 194 (411)
Q Consensus 124 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~l~~~~~~~~~~~~~vi~~~----~~~ 194 (411)
.+ +.|++..... .+.... ........+..+..++. .|+++++++++++ +++++|++++ +++
T Consensus 122 ~~~~~y~~~~~~~---g~~~~~------~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 122 ICGMPYDTLHDII---GMDDSK------KVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CSSSCCGGGHHHH---TCCTTC------CSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred eCCCCchhHHHHh---ccccch------hhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 87 6776532111 000000 00000111222333333 3899999999852 3688999998 677
Q ss_pred CCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC--cccccccccHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIM 269 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G--~~~g~~~~~~~~~ 269 (411)
++|.+.+ +++|.++|++ ||+++++|++|+.+ ...... .++.+.-+.|+||.++|+ .+.|+++++++++
T Consensus 192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li 264 (427)
T 3hvy_A 192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYV 264 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHH
T ss_pred ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccCCeEEEECCcccccccccceEEEEEECHHHH
Confidence 7787766 9999999999 89999999999743 111111 123333345899999964 3467888999998
Q ss_pred HHhcC--CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe----eecceEEE
Q 015230 270 EMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGF 343 (411)
Q Consensus 270 ~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~~ 343 (411)
+.++. ..+.. +.+.+.+...+..+...++.+ +..+++..++..++.+.|+++ +....+. +..+++.+
T Consensus 265 ~~l~~~~~~~~~-g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V~p~~~~~~~~li~~~ 337 (427)
T 3hvy_A 265 TQATFRVTVPGI-GGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDVLPKYNDKRTDIIQAI 337 (427)
T ss_dssp HHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSSSEEEE
T ss_pred HHHHHHhhcCCc-ccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCCceEEEEE
Confidence 88763 11111 112222122133333444332 456677888888888888876 3321111 11226666
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHc
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 374 (411)
.+ .+.+.+.++++.|...
T Consensus 338 ~l-------------~~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 338 KF-------------NDEKKLIDFIKGIQTA 355 (427)
T ss_dssp EC-------------SSHHHHHHHHHHHHHT
T ss_pred eC-------------CCHHHHHHHHHHhccc
Confidence 65 3345667888888876
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-17 Score=151.44 Aligned_cols=281 Identities=15% Similarity=0.118 Sum_probs=170.0
Q ss_pred cHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEEE--eCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 54 DDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 54 ~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~--~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.+++++++.++.-. ...+.|...-..++.+.+++.++....+++ ++||++|+..++... ..+++.|++.+
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al--l~pGD~Vl~~~ 122 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN--LRPGNTMLSVC 122 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHH--CCTTCEEEESS
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHH--hCCCCEEEEeC
Confidence 45677777654211 123556666678888888888854333443 889999999888742 45667888877
Q ss_pred -CCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-----CCHHHHHHHHHcCCCcEEEEEEcc----cCCC
Q 015230 126 -GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVGN 195 (411)
Q Consensus 126 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~~~~~vi~~~----~~~~ 195 (411)
+.|++..... ...+.. ........+..+..++. .|+++++++++++ +++++|++++ ++|+
T Consensus 123 ~~~y~~~~~~~-g~~~~~--------~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~np 192 (427)
T 3i16_A 123 GEPYDTLHDVI-GITENS--------NMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRR 192 (427)
T ss_dssp SSCCGGGHHHH-TCSCCC--------SSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSC
T ss_pred CCccHHHHHHH-hccccc--------hHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCC
Confidence 6666533111 000000 00000001112222222 2899999999842 3688999988 7777
Q ss_pred CCccCCCHHHHHHHHHHHHH--hCCEEEEeccccccc-cccCccccccCCCcchhhhhhhccC-C-cccccccccHHHHH
Q 015230 196 SGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFR-LAYGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME 270 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~~-~g~~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~~~~~~~ 270 (411)
+|.+.+ +++|.++|++ ||+++++|++|+.+. ..... .++.+.-+.|++|.+++ | .+.|++++++++++
T Consensus 193 tg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~ 265 (427)
T 3i16_A 193 ALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIE 265 (427)
T ss_dssp CCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHH
T ss_pred cccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccCCeEEEecCcccCCCCCCceEEEEEECHHHHH
Confidence 888776 9999999999 999999999997431 11111 12333334589999996 4 45788899999998
Q ss_pred HhcC--CCCcccccCCCCCHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-----eEE
Q 015230 271 MVAP--AGPMYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-----MFG 342 (411)
Q Consensus 271 ~~~~--~~~~~~~~t~~~~~~~-~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-----~~~ 342 (411)
.+.. ..... +.... +.+. +..+...++.+ +..+++..+++.++.+.|+++ +.... ++... ++.
T Consensus 266 ~l~~~~~~~~~-g~~~~-~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V~-p~~~~~~~~~i~~ 336 (427)
T 3i16_A 266 KTSYRLTVPGI-GGECG-STFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEVM-PKYDEKRSDIIQS 336 (427)
T ss_dssp HHHHHHSCTTT-GGGCC-CCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEE-SCTTSCCSSSCEE
T ss_pred HHHHhcccCcc-CccCC-ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCeec-CCCCCCCccEEEE
Confidence 8763 11111 11111 1122 23333333322 456678888888888888876 33211 11222 666
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
+.+ .+.+.+.++++.|+...
T Consensus 337 i~l-------------~~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 337 IKF-------------NDKDKLIEFCKGIQTGS 356 (427)
T ss_dssp EEC-------------SSHHHHHHHHHHHHHTC
T ss_pred EEE-------------CCHHHHHHHHHHHhhcC
Confidence 666 34456788999998873
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=151.90 Aligned_cols=310 Identities=16% Similarity=0.148 Sum_probs=172.7
Q ss_pred cccCCCcHHHHHHHH---HHHHcCCCCC-----CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCC
Q 015230 48 AIIGHADDQVLAALG---ETMKKGTSFG-----APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~---~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~ 118 (411)
...++..|++++++. +.......+. +..+...++.+++++.++ ..+++++++|++.++++++... ...++
T Consensus 72 g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~-~~~~g 150 (438)
T 1wyu_A 72 GVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLAL-RETGR 150 (438)
T ss_dssp SCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHH-HHHTC
T ss_pred CccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHH-hcCCC
Confidence 455564555555554 2223322211 123556788888888887 5556789999995555554332 33567
Q ss_pred cEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 119 ERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
++|++..+.|+........ ..|..+..++.. .+.. |+++ ++ +++++|+++.+ ++
T Consensus 151 d~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~--~~~~-------------d~~~----i~---~~t~~v~i~~p-n~ 207 (438)
T 1wyu_A 151 MGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE--GGRT-------------PLPE----VG---EEVGAVVVQNP-NF 207 (438)
T ss_dssp CEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB--TTBC-------------CCCC----CC---TTEEEEEEESS-CT
T ss_pred CEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc--CCcc-------------CHHH----hC---CCeEEEEEECC-CC
Confidence 8888877777654333221 235444443321 1110 2222 22 35777777776 77
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecc-cc-ccccccCccccccCCCcchhhh-hhhcc-----CCcccccccccHH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEV-MT-GFRLAYGGAQEYFGVTPDLTTL-GKIIG-----GGLPVGAYGGRRD 267 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~-~~-g~~~g~~~~~~~~~~~~d~~~~-sK~~~-----~G~~~g~~~~~~~ 267 (411)
+|.+.+ +++|.++|++||+++|+|-. ++ |. .. ....+ ..|++++ +|.|+ +|.++|+++++++
T Consensus 208 tG~~~~----l~~i~~la~~~g~~vivd~d~~a~g~-~~---~~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~ 277 (438)
T 1wyu_A 208 LGALED----LGPFAEAAHGAGALFVAVADPLSLGV-LK---PPGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKA 277 (438)
T ss_dssp TSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGT-BC---CHHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGG
T ss_pred CeEEec----HHHHHHHHHHcCCEEEEEechhhccC-cC---CCccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHH
Confidence 888887 99999999999999996522 32 22 00 00122 2455544 46542 3457899999888
Q ss_pred HHHHhcCCC----------C-------------cccccCCCC---CHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 015230 268 IMEMVAPAG----------P-------------MYQAGTLSG---NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELT 318 (411)
Q Consensus 268 ~~~~~~~~~----------~-------------~~~~~t~~~---~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~ 318 (411)
+++.+.... . .....+.+. +.++...+...+..+.. +++.++.+++.+++.
T Consensus 278 ~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~ 357 (438)
T 1wyu_A 278 FVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLH 357 (438)
T ss_dssp GGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 776653210 0 000122222 22322222222433322 455666777777777
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe--ccCC---CcceeeecC--
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF--APSQ---FEAGFTSLA-- 391 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v--~~~~---~~~~~~~~~-- 391 (411)
+.|+++ +..........+..+.+... .+..++.+.|.++||.+ .++. ...+|+++.
T Consensus 358 ~~L~~~----~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~ 420 (438)
T 1wyu_A 358 ALLLEV----PGVRPFTPKPFFNEFALALP-------------KDPEAVRRALAERGFHGATPVPREYGENLALFAATEL 420 (438)
T ss_dssp HHHTTS----TTCEECSCSSBCSEEEEECS-------------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTT
T ss_pred HHHhcC----CCeEECCCCCeEEEEEEeCC-------------CCHHHHHHHHHHCCceeccccccccCCCeEEEEeccc
Confidence 777654 21111111123333333211 12367899999999999 4443 346788654
Q ss_pred CCHHHHHHHHHHHHHHH
Q 015230 392 HSSDDIQHTITAAEKVL 408 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~ 408 (411)
+|++++++++++|++++
T Consensus 421 ~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 421 HEEEDLLALREALKEVL 437 (438)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 79999999999998764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=148.19 Aligned_cols=317 Identities=13% Similarity=0.014 Sum_probs=186.8
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCC-------CCC----CHHHHHHHHHHHhhCC-C-CCEEEE-eCChHHHHHHHHHHHHh
Q 015230 49 IIGHADDQVLAALGETMKKGTSF-------GAP----CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARA 114 (411)
Q Consensus 49 ~~g~~~~~v~~a~~~~l~~~~~~-------~~~----~~~~~~l~~~l~~~~~-~-~~~v~~-~~~g~~a~~~al~~~~~ 114 (411)
..+..+++|.+++.+.+.+.... ... .+..++..+.+++.++ . .++|+| |.|||++++.++.....
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC
Confidence 34447899999999988752111 111 3345667777777776 3 357888 47999999999985432
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCC--CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++++++...+.++.. ....+...+ +..++.+...+. ++++++..++ +++++|.+..+
T Consensus 100 ~~~Gd~v~~~~~g~~~~~-~~~~a~~~G~~~~~~~~~~~~~~--------------~~~~~~~~i~---~~t~lV~~~h~ 161 (377)
T 3e77_A 100 LKAGRCADYVVTGAWSAK-AAEEAKKFGTINIVHPKLGSYTK--------------IPDPSTWNLN---PDASYVYYCAN 161 (377)
T ss_dssp GSTTCEEEECCCSHHHHH-HHHHHTTTSEEEECSCCCSSSCS--------------CCCGGGCCCC---TTCSCEEEESE
T ss_pred CCCCCeEEEEECCHHHHH-HHHHHHHhCCceEEeccCCCcCC--------------CCChHHhccC---CCccEEEEeCc
Confidence 222567777666666531 111222222 222222111111 2233333332 45677777777
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~ 271 (411)
.+.+|.+.| + +|+++|+++++|.+|+ .| ....++.++ ..+.+..|++++ --+|+++.++++++.
T Consensus 162 et~tG~~~p----i-----i~~~~~~~~~vD~~q~---~g~~~id~~~~~--~~~~s~~K~~gp-~G~g~l~~~~~~l~~ 226 (377)
T 3e77_A 162 ETVHGVEFD----F-----IPDVKGAVLVCDMSSN---FLSKPVDVSKFG--VIFAGAQKNVGS-AGVTVVIVRDDLLGF 226 (377)
T ss_dssp ETTTTEECS----S-----CCCCTTCCEEEECTTT---TTSSCCCGGGCS--EEEEEGGGTTSC-TTCEEEEEETTSCSC
T ss_pred cCchheEch----h-----hhccCCCEEEEEcccc---cCCCCCchhhcC--EEEEecccccCC-CccEEEEEcHHHHhh
Confidence 777899998 5 5889999999999997 22 222333333 244567799952 117778888777654
Q ss_pred hcCCCCccc--------cc-CCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceE---E-
Q 015230 272 VAPAGPMYQ--------AG-TLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAIC---G- 334 (411)
Q Consensus 272 ~~~~~~~~~--------~~-t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~- 334 (411)
+.+..+.+. .. ..+++.....+..++++.+.+ +++.++.+++.+++++.|+++. ++... .
T Consensus 227 ~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~~ 303 (377)
T 3e77_A 227 ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEPQ 303 (377)
T ss_dssp CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCGG
T ss_pred ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCHH
Confidence 442211111 11 235566666666777876654 3455666666666666666541 12111 1
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...+..+.|.+.+.+ ++.+....+.+.+.++||.+.++. ...+|++ ..+|++++|++++.|++++++
T Consensus 304 ~rs~~ivsf~~~~~~---------~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 304 NRSKMNIPFRIGNAK---------GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GBCSSEEEEEESSTT---------CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcCCCC---------CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 112345777774321 111111457777889999998773 2347775 566999999999999998764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=152.14 Aligned_cols=314 Identities=10% Similarity=-0.050 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
+.....++.+.+++.++....+++++|+++|+.+++... ..+++.|++..+.|++.....+...|..+..++.... .
T Consensus 171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al--~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~-~ 247 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL--VSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN-P 247 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC-T
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh--cCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc-c
Confidence 345678888888888864445667776679999988742 3456778887777765444324445554433221100 0
Q ss_pred CCCCCCCceeecCCCCHHHH-----HHHHHcC-CC---c----EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEE
Q 015230 154 VPKGATYETLTAPFNDVSAL-----ENLFENN-KG---E----IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 220 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l-----~~~~~~~-~~---~----~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~l 220 (411)
+ + ....+ |++++ ++++++. ++ . ..+++++| + .+|.+.+ +++|.++|++||++|
T Consensus 248 ~----~-i~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n-~~G~v~d----l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 248 Y----G-FIGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-T-YDGTIYN----AHEVVKRIGHLCDYI 313 (730)
T ss_dssp T----C-CEEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-C-TTSEEEC----HHHHHHHHGGGBSEE
T ss_pred c----C-ccCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-C-CCCeecC----HHHHHHHHHHcCCeE
Confidence 0 0 00011 45555 8887753 11 1 23445555 3 4788888 999999999999999
Q ss_pred EEecccccc-cccc----Cccc--cccCCC----cchhhhhhhccCCcccc-cccccHHHH---------HHhcCCCCcc
Q 015230 221 IFDEVMTGF-RLAY----GGAQ--EYFGVT----PDLTTLGKIIGGGLPVG-AYGGRRDIM---------EMVAPAGPMY 279 (411)
Q Consensus 221 i~De~~~g~-~~g~----~~~~--~~~~~~----~d~~~~sK~~~~G~~~g-~~~~~~~~~---------~~~~~~~~~~ 279 (411)
++||+|++. ..+. ...+ +.++.+ .-+.|++|+++| ++.| ++..+++.+ ..+... ..
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~~--~~ 390 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNNS--FN 390 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHHH--HH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHHH--HH
Confidence 999999632 2221 1112 122332 123489999763 3433 443322211 111100 00
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH-HH-HhcCCceEE--------------------
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID-AG-KKAGHAICG-------------------- 334 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~-------------------- 334 (411)
...+.+++...+++..++++.+.. ++..++..++.+++++.|++ +. .+.......
T Consensus 391 ~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 391 LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 112344566666665566665443 45677888888888888877 21 000000000
Q ss_pred -----------e--eecc-e-----EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCC
Q 015230 335 -----------G--YISG-M-----FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHS 393 (411)
Q Consensus 335 -----------~--~~g~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t 393 (411)
. ..+. + +.+...+.+... ......+..+..+.+.|.++||.+...+...+++ +..+|
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~--g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t 548 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPET--GDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAET 548 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTT--TEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCC
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCccccc--ccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCC
Confidence 0 0010 0 222221000000 0000112235789999999999998876556655 57779
Q ss_pred HHHHHHHHHHHHHHHH
Q 015230 394 SDDIQHTITAAEKVLR 409 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~ 409 (411)
++++++++++|.++.+
T Consensus 549 ~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 549 PAKMNNLITQLLQLQR 564 (730)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=151.34 Aligned_cols=313 Identities=9% Similarity=-0.020 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PG 153 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 153 (411)
.....+..+.+++.++..+.+++++|+++|+..++... ..+++.|++..++|++.... +...|..+.+++.... .+
T Consensus 204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al--~~~GD~Vlv~~~~h~s~~~~-~~~~G~~~v~v~~~~~~~g 280 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC--MTDNDVVVVDRNCHKSIEQG-LMLTGAKPVYMVPSRNRYG 280 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HHHHCCEEEEECCCBCTTS
T ss_pred ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHh--cCCCCEEEECCCchHHHHHH-HHHcCCEEEEEeCCCCccc
Confidence 44556677777777754455667777789999988753 34567888888877654444 4555665544332211 01
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCc-------E-EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGE-------I-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-------~-~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
.. + ......-|+++++++++++++. + .+++++| +.+|.+.+ +++|.++|++|+++|++||+
T Consensus 281 ~~---g--~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livDeA 349 (755)
T 2vyc_A 281 II---G--PIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_dssp CB---C--CCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEECT
T ss_pred cc---c--ccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEECc
Confidence 00 0 0000001789999999764222 1 3555555 35788888 99999999999999999999
Q ss_pred cccc-ccccC----ccccccC--CCc------chhhhhhhccCCcc-cccccccHH---H-HHHhcCCCCcccccCCCCC
Q 015230 226 MTGF-RLAYG----GAQEYFG--VTP------DLTTLGKIIGGGLP-VGAYGGRRD---I-MEMVAPAGPMYQAGTLSGN 287 (411)
Q Consensus 226 ~~g~-~~g~~----~~~~~~~--~~~------d~~~~sK~~~~G~~-~g~~~~~~~---~-~~~~~~~~~~~~~~t~~~~ 287 (411)
|++. ..+.. ..+ .+ .+. -+.|++|+++| ++ .|++..+++ + ...+... .....+.+++
T Consensus 350 ~~~~~~~~~~~~~~~~~--~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~--~~~~~s~sp~ 424 (755)
T 2vyc_A 350 WYGYARFNPIYADHYAM--RGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQA--YMMHATTSPL 424 (755)
T ss_dssp TCTTGGGCGGGTTSSSS--CSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHH--HHHTSCSSCC
T ss_pred CchhcccCcccCCcchh--cCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHH--HHHhCCCCHH
Confidence 9743 22221 111 22 121 23478998763 44 455555432 1 1111110 0112234566
Q ss_pred HHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHh--------cC-C-ceEEee------------------
Q 015230 288 PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK--------AG-H-AICGGY------------------ 336 (411)
Q Consensus 288 ~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--------~~-~-~~~~~~------------------ 336 (411)
.+..++..++++.+.. +++.++..++.+++++.|+++... +. + .....+
T Consensus 425 ~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (755)
T 2vyc_A 425 YAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLT 504 (755)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhcc
Confidence 7777777777776654 467888999999999999887431 10 0 001100
Q ss_pred ---------------------ec------ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 337 ---------------------IS------GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 337 ---------------------~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
.| ..+.+........- .....+..+..+.+.|.++||.+...+...+++
T Consensus 505 ~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G---~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~ 581 (755)
T 2vyc_A 505 TVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDG---ELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFL 581 (755)
T ss_dssp HCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTS---SBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEE
T ss_pred chhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCC---CccccCCcHHHHHHHHHHCCCEEeecCCCeEEEE
Confidence 11 12222221100000 000012334688899989999987665556654
Q ss_pred -ecCCCHHHHHHHHHHHHHHHH
Q 015230 389 -SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+...|++++++++++|.++.+
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHH
Confidence 566799999999999987753
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-14 Score=131.68 Aligned_cols=294 Identities=13% Similarity=0.046 Sum_probs=173.2
Q ss_pred HhhCC--CCCEEEEeCChHHHHHHHHHHHHhc--cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCc
Q 015230 86 ISAVP--SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE 161 (411)
Q Consensus 86 ~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (411)
.+..| .....++++|+|.++.+++.++... .+++.||+ +...|.....++.+.|..+.+++......
T Consensus 126 L~~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~~d~~-------- 196 (501)
T 3hl2_A 126 IKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENVLEGD-------- 196 (501)
T ss_dssp HHHTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEEEETT--------
T ss_pred HHHcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeeeeccc--------
Confidence 33445 4557888888887777666544222 13366666 66677777888888887665543211110
Q ss_pred eeecCCCCHHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 162 TLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 162 ~~~~~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
...+ |++++++++++++ +.+.+|+.++.+.-++...+ +++|+++|++||+++++||+|... .....+....
T Consensus 197 ~~~i---d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA 269 (501)
T 3hl2_A 197 ELRT---DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 269 (501)
T ss_dssp EEEE---CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHH
T ss_pred ccCC---CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHH
Confidence 1122 8999999999864 56677777665554555566 999999999999999999999643 2221111111
Q ss_pred cCCC-cchh--hhhhhccCCccccc-cc-c-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHH
Q 015230 240 FGVT-PDLT--TLGKIIGGGLPVGA-YG-G-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLN 311 (411)
Q Consensus 240 ~~~~-~d~~--~~sK~~~~G~~~g~-~~-~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~ 311 (411)
+... .|++ |.-|.+-. |+|. ++ . ++++++.+... +.+ +.+..| +...-...++.-.+ +++.++..
T Consensus 270 ~~~GrAD~vVqS~HK~llv--pIGG~ii~~~d~e~l~~~~~~---yPG-r~S~Sp-sldl~~tLL~lGr~Gy~~ll~e~~ 342 (501)
T 3hl2_A 270 ARVGRIDAFVQSLDKNFMV--PVGGAIIAGFNDSFIQEISKM---YPG-RASASP-SLDVLITLLSLGSNGYKKLLKERK 342 (501)
T ss_dssp HHHSCCCEEEEEHHHHHCC--CSSCEEEEESCHHHHHHHHHT---SCS-CBCSHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcEEEeccccccee--ecCceEEEeCCHHHHHHHHHh---CCC-CCCCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 5655 45576643 4443 33 2 56677766532 212 222222 22222222332222 78889999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe---EeccCCC----
Q 015230 312 KITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFAPSQF---- 383 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi---~v~~~~~---- 383 (411)
++.+++++.|+++...++.. ......-.-+.+.+..... ........+...|..++| -|.+.+.
T Consensus 343 ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i 414 (501)
T 3hl2_A 343 EMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTV 414 (501)
T ss_dssp HHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcCCCcceeecCCCceEE
Confidence 99999999999997755522 2222122233444422110 122345788899988855 3323211
Q ss_pred ---------------cc--eee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 384 ---------------EA--GFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 ---------------~~--~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+. +.. ...++++|+|.++++|++++.+
T Consensus 415 ~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 415 SGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 01 222 3677999999999999999865
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=141.11 Aligned_cols=308 Identities=12% Similarity=-0.003 Sum_probs=175.0
Q ss_pred CcHHHHHHHHHHHHcCCCCC-----------CCCHHHHHHHHHHHhhCCC--CCEEEE-eCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGTSFG-----------APCLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-----------~~~~~~~~l~~~l~~~~~~--~~~v~~-~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+++|++++.+.+.+....+ -..+..++..+.+++.++- .++|+| |.|||++++.++... ..++
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l--~~~g 115 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL--LGDK 115 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc--cCCC
Confidence 78999999987765421110 0133445667777777763 357888 689999999999754 2345
Q ss_pred cEEEEEeCCcCCCchhhhhhcCC-CCcccCCC-CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCC
Q 015230 119 ERIIKFEGCYHGHADPFLVKAGS-GVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~ 196 (411)
+++++...+.++.. ....+... .+.+++.+ ...+.. + ++++++..++ +++++|++..+.+.+
T Consensus 116 d~v~~~~~~~~~~~-~~~~a~~~G~v~~v~~~~~~~G~~---------~---~~~~~~~~l~---~~t~lV~~~h~et~t 179 (386)
T 3qm2_A 116 TTADYVDAGYWAAS-AIKEAKKYCAPQIIDAKITVDGKR---------A---VKPMREWQLS---DNAAYLHYCPNETID 179 (386)
T ss_dssp CEEEEEESSHHHHH-HHHHHTTTSEEEEEECEEEETTEE---------E---ECCGGGCCCC---TTCSCEEECSEETTT
T ss_pred CeEEEEeCCHHHHH-HHHHHHHhCCeEEEecCcccCCCC---------C---CchHHHhhcC---CCCcEEEEECCcCCc
Confidence 67766666655431 11112111 22222211 001110 0 3344444443 456778887777778
Q ss_pred Ccc-CCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC
Q 015230 197 GFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 197 G~~-~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
|.+ .| +++|. +|+++++|.+|+ .| ....++.++ .++.+.-|+++. --+|+++.++++++.+.+
T Consensus 180 G~~i~p----i~~i~-----~g~~~~vDa~qs---~g~~pidv~~~~--~~~~s~hK~lGP-~G~g~l~v~~~~~~~~~~ 244 (386)
T 3qm2_A 180 GIAIDE----TPDFG-----PEVVVTADFSST---ILSAPLDVSRYG--VIYAGAQKNIGP-AGLTLVIVREDLLGKAHE 244 (386)
T ss_dssp TEECCC----CCCCC-----TTCCEEEECTTT---TTSSCCCGGGCS--EEEEETTTTTCC-TTEEEEEEEGGGCSCCCT
T ss_pred CEecCc----hhhhc-----CCCEEEEEcccc---cCCCCCCccccC--EEEEecccccCC-CccEEEEECHHHHhhhcc
Confidence 985 77 66664 899999999997 22 222333333 355677799952 117888888877654443
Q ss_pred CCCccc--------cc-CCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceE---Ee-ee
Q 015230 275 AGPMYQ--------AG-TLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAIC---GG-YI 337 (411)
Q Consensus 275 ~~~~~~--------~~-t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~-~~ 337 (411)
..+.+. .. ..+++..+..+..++++.+.+ ++..++.+++.+++++.|+++ ++... .. ..
T Consensus 245 ~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~----~~~~~~~~~~~rs 320 (386)
T 3qm2_A 245 SCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS----DFYRNDVAQANRS 320 (386)
T ss_dssp TSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC----SSEECCBCGGGBC
T ss_pred cCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC----CCcccCCCHHHcC
Confidence 212110 00 123454555555666665543 445566666667777766654 32111 11 12
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..++.|.+.+ ...+ ..+...|.++||.+..+.. ..+|++ ..+|++|+|++++.|+++.++
T Consensus 321 ~~iv~f~~~~------------~~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 321 RMNVPFQLAD------------NTLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp SSEEEEEESS------------GGGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCC------------cccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3466666632 1122 4566778899999987632 347775 456899999999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=129.21 Aligned_cols=304 Identities=11% Similarity=-0.068 Sum_probs=176.0
Q ss_pred CcHHHHHHHHHHHHcCCCC-------CCC----CHHHHHHHHHHHhhCCC--CCEEEE-eCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGTSF-------GAP----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~-------~~~----~~~~~~l~~~l~~~~~~--~~~v~~-~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+|+|++++.+.+.+.... ... .+..++..+.+++.++. ..+|+| |.|||++++.++.... ++
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence 7899999999887642111 111 24456677777777762 458888 9999999999998542 44
Q ss_pred cEEEEEeCCcCCCchhh-hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 119 ERIIKFEGCYHGHADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
+++.+...+.+++.... ....|..+.+++.+....+.. +++. + ++ +++++|.+..+.+.+|
T Consensus 93 ~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~------------~~~~-~--l~---~~t~lv~~~~~e~~tG 154 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDH------------IPRV-E--FS---DNADYAYICSNNTIYG 154 (361)
T ss_dssp SCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCS------------CCCC-C--CC---TTSSEEEEESEETTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCc------------CChh-h--cC---CCCCEEEEeCCCCCcc
Confidence 44433333333331111 112244444433332211100 1222 2 33 3566677766666678
Q ss_pred ccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcC-
Q 015230 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP- 274 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~- 274 (411)
.+.++ +++ +|+++++|.+|+ .|.. .++.- ..|++ +..|+++. --+|+++.++++++.+.+
T Consensus 155 ~~~~~---------i~~-~~~~~~vD~~q~---~g~~-~id~~--~~d~~~~s~~K~~gp-~G~g~l~~~~~~~~~~~~~ 217 (361)
T 3m5u_A 155 TQYQN---------YPK-TKTPLIVDASSD---FFSR-KVDFS--NIALFYGGVQKNAGI-SGLSCIFIRKDMLERSKNK 217 (361)
T ss_dssp EECSS---------CCC-CSSCEEEECGGG---TTSS-CCCCT--TEEEEEEETTTTSSC-TTCEEEEEEHHHHHHHHTC
T ss_pred eeCCc---------ccc-cCCEEEEEcccc---cCCC-CCCcc--cCCEEEEechhccCC-CccEEEEEcHHHHhhhcCC
Confidence 87662 333 499999999997 2211 11111 23555 45599952 117888999998877654
Q ss_pred CCCccc--------ccC-CCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHhcC-CceE---E-ee
Q 015230 275 AGPMYQ--------AGT-LSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAG-HAIC---G-GY 336 (411)
Q Consensus 275 ~~~~~~--------~~t-~~~~~~~~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~-~~ 336 (411)
..+.+. ..+ .+++..+..+..++++.+.+. +..++.+++.+++++.|+++ + +... . ..
T Consensus 218 ~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~~~~~~r 293 (361)
T 3m5u_A 218 QIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS----NGFYKGHADKKDR 293 (361)
T ss_dssp CCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS----TTSEEESSCGGGB
T ss_pred CCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC----CCeeeccCCHHHc
Confidence 112111 112 355666777777888877643 34455666666666666554 3 2111 0 11
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...++.|.+.+. ...+ ..+.+.|.++||.+..+.. ..+|++ ...|++|++++++.|+++.++
T Consensus 294 s~~ivsf~~~~~-----------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 294 SLMNVSFNIAKN-----------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CSSEEEEEESSC-----------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCc-----------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 234566666320 1122 3677888999999987732 347775 456999999999999998764
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=142.05 Aligned_cols=308 Identities=8% Similarity=-0.002 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCCh-HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSG-TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g-~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
+....++.+.+++.+ +.++.+++++| +.|+.+++.. ...+++.|++..++|.+ ...++...|..+.+++... ..
T Consensus 194 ~g~i~eaE~~lA~~f-Ga~~a~~v~nGts~An~~ai~a--l~~pGD~VLv~r~~H~S-~~~~l~lsGa~pv~v~~~~-~~ 268 (715)
T 3n75_A 194 SGPHKEAEQYIARVF-NADRSYMVTNGTSTANKIVGMY--SAPAGSTILIDRNCHKS-LTHLMMMSDVTPIYFRPTR-NA 268 (715)
T ss_dssp BTHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--HCCTTCEEEEESSCCHH-HHHHHHHSCCEEEEECCCB-CT
T ss_pred cHHHHHHHHHHHHHh-CCCCceEECcHHHHHHHHHHHH--hCCCCCEEEECCCccHH-HHHHHHHcCCEEEEEeccc-cc
Confidence 444567777777777 44555555445 6898888874 24456677776666654 4445566666554433221 11
Q ss_pred CCCCCCCceeecCCC------CHHHHHHHHHcCCCcE---EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 154 VPKGATYETLTAPFN------DVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~------d~~~l~~~~~~~~~~~---~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
+ .++++ |+++++++++++++.. .+++++| +..|.+.+ +++|.++|++++ +++||
T Consensus 269 ~---------gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE 331 (715)
T 3n75_A 269 Y---------GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp T---------CCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred c---------ccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence 1 11111 7999999998754322 4566666 66888888 999999998763 79999
Q ss_pred ccccc-ccccCc----cccccCCCcc-----hhhhhhhccCCcc-cccccccHHH-HHHhcCCCCcccccCCCCCHHHHH
Q 015230 225 VMTGF-RLAYGG----AQEYFGVTPD-----LTTLGKIIGGGLP-VGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMT 292 (411)
Q Consensus 225 ~~~g~-~~g~~~----~~~~~~~~~d-----~~~~sK~~~~G~~-~g~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~a 292 (411)
+|+.. ..++.+ ++. .+..+| +.|++|+++| +. .|++.++.++ .+.+.. ......+.+++++.++
T Consensus 332 AH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~--~~~~~~STSpsy~~~A 407 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVA 407 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHH--HHHHTSCSSCCHHHHH
T ss_pred ccccccccCCccccccccc-cCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHH--HHHhhcCCCchHHHHH
Confidence 99733 222211 111 121245 3489999874 22 4566554331 111211 0112235567888888
Q ss_pred HHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC-ceEE------eee------------------cceEEEE
Q 015230 293 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH-AICG------GYI------------------SGMFGFF 344 (411)
Q Consensus 293 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~------~~~------------------g~~~~~~ 344 (411)
+..++++.+.. ++++++..++.+++++.|+++....+. ...+ ... .....++
T Consensus 408 sldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~D 487 (715)
T 3n75_A 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (715)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEEC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCC
Confidence 88888877752 578899999999999999988532110 0000 000 0011122
Q ss_pred EecCCCC--Ccch--hcccchHHHHHHHHHHHHcCeEeccCCCccee-e-ecCCCHHHHHHHHHHHHHHH
Q 015230 345 FTEGPVY--NFED--AKKSETTKFARFYRGMLEEGVYFAPSQFEAGF-T-SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 345 ~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~-~-~~~~t~~~i~~~i~~l~~~~ 408 (411)
..+..+. .+.. .....+..+..+.+.|.++||.+.-...+.+- + +...|++++++++++|.+.-
T Consensus 488 p~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~ 557 (715)
T 3n75_A 488 PIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (715)
T ss_dssp TTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1110000 0000 00001233467888999999999876655543 2 67779999999999987653
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-13 Score=124.31 Aligned_cols=306 Identities=12% Similarity=0.001 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHhhCC--CCCEEEEeCChH-HHHHHHHHHHHhcc-CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC
Q 015230 76 LLENVLAEMVISAVP--SIEMVRFVNSGT-EACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 151 (411)
Q Consensus 76 ~~~~~l~~~l~~~~~--~~~~v~~~~~g~-~a~~~al~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 151 (411)
...+.+..|+.+.++ .....++++|+| .++.++|..++... +.+.||+. ..-|.....++.+.|.++.++.....
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeec
Confidence 456678888888776 345668898887 55555555555422 24555555 55888888888888876555432111
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
.. ...+ |++.+++++++++ +.+.+|+.+|.+..+|.+.+ +++|.++|++||+++++|++|.+.
T Consensus 177 ~~--------~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 177 GD--------ELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp TT--------EEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred Cc--------cCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 11 1111 8999999998765 46788888887776677777 999999999999999999999743
Q ss_pred ccccCccccccCC-Ccchh--hhhhhccCCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--
Q 015230 230 RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-- 303 (411)
Q Consensus 230 ~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-- 303 (411)
+....+....+.. ..|++ +.-|++..-...+.+.. +++.++.+.. .+.+ ..+.+| ++......+..-.+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g-~~s~Sp-sL~l~~~l~~~G~~g~ 316 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPG-RASASP-SLDVLITLLSLGCSGY 316 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCS-CBCSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---Hhhc-CCcccH-HHHHHHHHHHHHHHHH
Confidence 3211111111111 23554 55688875333445543 5556665542 1211 111122 22222222222111
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC---eEec
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG---VYFA 379 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G---i~v~ 379 (411)
+++.++..++.+++++.|+++...++.... ....+.-..+.+.... ...+.+..++.-.+...| .-+.
T Consensus 317 ~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~--------~~~~~D~tkl~i~~~~~g~sG~~v~ 388 (450)
T 3bc8_A 317 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTID--------GHHDKAVTQLGSMLFTRQVSGARAV 388 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTS--------SSSSCHHHHHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccc--------ccccCCCceeEEEecCCCCccceee
Confidence 345556688889999999988755553211 0101111112221100 011123356666666654 2222
Q ss_pred ---------------------cCCCcce--eeecCCCHHHHHHHHHHHHHHHHh
Q 015230 380 ---------------------PSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ---------------------~~~~~~~--~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
-.....+ .++...+++++++++++|+++.++
T Consensus 389 ~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 389 PLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp CSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1111112 225778999999999999987653
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-10 Score=102.26 Aligned_cols=312 Identities=16% Similarity=0.080 Sum_probs=167.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-----------CHHHHHHHHHHHhhCC-CCC-E--EEEeCChHHHHHHHHHHHHhccC
Q 015230 53 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIE-M--VRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~-----------~~~~~~l~~~l~~~~~-~~~-~--v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
..|.|++++-..+.+--.-+|+ ++.+....++..+.++ ... . =+-..||+.|+.+++.. .+.+
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~A--ll~P 143 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA--LLQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HCC-
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHH--HcCC
Confidence 5666666666666552111111 3444445556667775 332 1 24556899999998874 3456
Q ss_pred CcEEEEEeCCcCCCchhh-------hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 118 RERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
++.|+.++...-|+..-. ...+|......++.... ....+ |.+.+++..+++ ++++|++-
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~--------~t~~I---Dyd~~~~~A~~~--kPklIi~G 210 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP--------KTGLI---DYNQLALTARLF--RPRLIIAG 210 (490)
T ss_dssp CCCEECBC----------------------------CBCEET--------TTTEE---CHHHHHHHHHHH--CCSEEEEC
T ss_pred CCEEEecccCCCCcccccccCCCcccccccccccccccccCC--------CCCcc---cHHHHHHHHhhc--CCCeEEEC
Confidence 788888777655543211 11112111111110000 00011 899999988865 67788875
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchh--hhhhhccCCccccccccc
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~ 265 (411)
... ..-..+ +++++++|++.|.+|++|-+|. |+ -.|.+ ..+++ .|++ |.-|+|.| -|-|.+.++
T Consensus 211 ~Sa--Y~r~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~----ADvVTtTTHKTLrG-PrGG~Il~~ 279 (490)
T 3ou5_A 211 TSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH----ADIVTTTTHKTLRG-ARSGLIFYR 279 (490)
T ss_dssp CSS--CCSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT----CSEEEEESSSTTCS-CSCEEEEEE
T ss_pred Ccc--CccccC----HHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc----ceEEeccccccccC-CCceEEEec
Confidence 422 122234 9999999999999999999994 77 44422 12221 3666 45699975 245555555
Q ss_pred H---------------HHHHHhcCC-CCcccccCCCCCHHHHHHHHHHH-HHHhc--CChHHHHHHHHHHHHHHHHHHHH
Q 015230 266 R---------------DIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTL-KRLKE--PGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 266 ~---------------~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
+ ++.+.+... -+...+ ++.....++-..++ +.+.. ++..+++.++++.+.+.|.+.
T Consensus 280 ~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qg---gp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-- 354 (490)
T 3ou5_A 280 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQG---GPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-- 354 (490)
T ss_dssp CSEEEECC--CCEEECCCHHHHHHHHTTTTCS---SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cccccccccccchhHHHHHHHHHhhcCccccc---cchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--
Confidence 4 223333210 012222 22222223322223 33332 567788888999998888876
Q ss_pred hcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C-----Ccceee------ec
Q 015230 327 KAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFT------SL 390 (411)
Q Consensus 327 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~------~~ 390 (411)
++.....+ ...++++++.+.. .+.++..+.|.+.||.+... . ...+|+ ..
T Consensus 355 --G~~vvsGgTdnHlvLvDl~~~g------------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtR 420 (490)
T 3ou5_A 355 --GYSLVSGGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSR 420 (490)
T ss_dssp --TCEEGGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHT
T ss_pred --CCeeecCCCCceEEEEeccccC------------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhC
Confidence 32211111 2457778775432 12356677788889988532 1 123677 25
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 015230 391 AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~ 409 (411)
...++|++++.+.|.+++.
T Consensus 421 G~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 421 QFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6788999888888887664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 411 | ||||
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 1e-136 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 5e-75 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 1e-65 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 3e-65 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 1e-63 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 1e-45 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 1e-40 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 1e-23 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 8e-14 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 1e-12 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-12 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 8e-11 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 8e-07 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 2e-06 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 2e-06 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 3e-05 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 395 bits (1015), Expect = e-136
Identities = 301/411 (73%), Positives = 349/411 (84%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLRL RA+TGR++
Sbjct: 77 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+AYGG QE F
Sbjct: 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKF 256
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 238 bits (607), Expect = 5e-75
Identities = 109/427 (25%), Positives = 167/427 (39%), Gaps = 33/427 (7%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+P GV PI D + +WD++G EY+D+ G GH +V+AA
Sbjct: 14 IPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAA 64
Query: 61 LGETMKKGT---SFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAF 115
+ +KK + L E++ VP V +G+EA +++ARA
Sbjct: 65 VEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA 124
Query: 116 TGRERIIKFEGCYHGHADPFLVKAG------SGVATLGLPDSPGVPKGATYETLTAPFND 169
T R I F G YHG L G +G+ + + +
Sbjct: 125 TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIA 184
Query: 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG- 228
+ +IAAI++EPV G GF A P F+ +R + E+G +LI DEV +G
Sbjct: 185 SIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA 244
Query: 229 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288
R A E GV PDLTT K I GG P+ GR ++M+ VAP G GT +GNP
Sbjct: 245 GRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNP 301
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
+A A + LK ++ + N + +L G++ +K + M E
Sbjct: 302 IACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFED 361
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG----FTSLAHSSDDIQHTITAA 404
+N DAK A ++G+ L I+ +
Sbjct: 362 GDHNKPDAK-----LTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 416
Query: 405 EKVLRQI 411
+ +
Sbjct: 417 SQCFDEA 423
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 212 bits (541), Expect = 1e-65
Identities = 82/404 (20%), Positives = 148/404 (36%), Gaps = 33/404 (8%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLL 77
P+V KG ++D++ Y D++ ++ GH +L A+ K T A +
Sbjct: 22 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 81
Query: 78 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 137
+ E ++ + + V +N+G EA +L R + + +
Sbjct: 82 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYE----VKKIPENMAKIVVCK 137
Query: 138 KAGSGVATLGLPDSPGVPKGATYE-----TLTAPFNDVSALENLFENNKGEIAAIILEPV 192
SG + S + + P++D+ ALE ++ + A I+EP+
Sbjct: 138 NNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPI 195
Query: 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 251
G +G I P ++L + I K+ L + DEV TG R ++ V PD+ LGK
Sbjct: 196 QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGK 255
Query: 252 IIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310
+ GG P+ A DIM ++ P T GNPLA + + L L E
Sbjct: 256 ALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNPLAASICVEALNVLINEKLCENA 312
Query: 311 NKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFARF 367
K+ G + + K + + G + F V + K +
Sbjct: 313 EKLGGPFLENLKRELKDSKIV---RDVRGKGLLCAIEFKNELVNVLDICLKLKENGL--I 367
Query: 368 YRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
R + ++ + P L + + + K ++
Sbjct: 368 TRDVHDKTIRLTP--------PLCITKEQLDECTEIIVKTVKFF 403
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 211 bits (539), Expect = 3e-65
Identities = 88/396 (22%), Positives = 160/396 (40%), Gaps = 22/396 (5%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T
Sbjct: 24 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 83
Query: 79 NV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFL 136
+ E I+ + + V +N+G EA +LAR + + I+ + A F
Sbjct: 84 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 143
Query: 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196
+ S +++ P S P+ND+ ALE ++ +AA ++EP+ G +
Sbjct: 144 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEA 201
Query: 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 255
G + P P +L +R + + L I DE+ TG R A +Y V PD+ LGK + G
Sbjct: 202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 261
Query: 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 315
GL + D + + P T GNPL I L+ L+E E +K+
Sbjct: 262 GLYPVSAVLCDDDIMLTIK--PGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGI 319
Query: 316 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375
L ++ A+ G + K+++ + + + G
Sbjct: 320 ILRNELMKLPSDVVTAVRG--KGLLNAIVI-----------KETKDWDAWKVCLRLRDNG 366
Query: 376 VYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 409
+ P+ + + L D+++ +I K +
Sbjct: 367 LLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTIL 402
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 207 bits (527), Expect = 1e-63
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 39/398 (9%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGAPCL 76
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ + P
Sbjct: 20 DLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTP 79
Query: 77 LENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 135
+ + + +P F SGTEA L+ ARA TGR++ + + G
Sbjct: 80 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGS 139
Query: 136 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195
L + + P P V P+NDV AL+ + E AA+ILEPV G
Sbjct: 140 L--SVTWEPKYREPFLPLVE-----PVEFIPYNDVEALKRAVDE---ETAAVILEPVQGE 189
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 254
G P+FL A R IT+E GALLI DE+ TG R A E+FG+ PD+ TL K +G
Sbjct: 190 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALG 249
Query: 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 314
GG+P+G R ++ + G T GNPLAM AG+ ++ L+ +E ++
Sbjct: 250 GGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELG 306
Query: 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374
+ + + G G+ ++ + + +R + +
Sbjct: 307 PWFMEKLRAIPSPKIREVRG---MGLMVGLE-------LKEKAAPYIARLEKEHRVLALQ 356
Query: 375 G----VYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 408
+ F P L +D++ + A VL
Sbjct: 357 AGPTVIRFLP--------PLVIEKEDLERVVEAVRAVL 386
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 161 bits (406), Expect = 1e-45
Identities = 88/412 (21%), Positives = 158/412 (38%), Gaps = 26/412 (6%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 76
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 77 -LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 135
+ ++ + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143
Query: 136 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----------ALENLFENNKGEIA 185
S P + G T F A + + + G +A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203
Query: 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-FRLAYGGAQEYFGVTP 244
A I EP++ + G I ++ A++R + G LLI DE TG R A + GVTP
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 263
Query: 245 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304
D+ TL K +G GLP+ A I E A T +PL G+ L ++
Sbjct: 264 DILTLSKTLGAGLPLAAIVTSAAIEER-AHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322
Query: 305 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364
G N + L +G++D ++ + G + K+
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDR-----RTKEPADGLG 377
Query: 365 ARFYRGMLEEGVYFAPSQFEAGFT------SLAHSSDDIQHTITAAEKVLRQ 410
A+ R + G+ Q L S D+I ++ + + +
Sbjct: 378 AKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 147 bits (371), Expect = 1e-40
Identities = 96/415 (23%), Positives = 160/415 (38%), Gaps = 42/415 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPC- 75
S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 76 -LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYH 129
+ ++V +E V +SG+ A +++A + R+R + F YH
Sbjct: 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYH 145
Query: 130 GHADPFLVKAGSGVATLGL-----PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184
G + + L P++ P + D+ L ++ EI
Sbjct: 146 GDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI 205
Query: 185 AAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
AA+I+EP+V +G P++L IR+I G LLI DE+ TGF R A E+ +
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI 265
Query: 243 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLK 299
PD+ LGK + GG + + A R++ E ++ AG T GNPLA A +L
Sbjct: 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325
Query: 300 RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L+ + + I +L + + A + + G G T PV
Sbjct: 326 ILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVETTHPV--------- 374
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFT-----SLAHSSDDIQHTITAAEKVLR 409
A + +E+GV+ P G +Q A + ++
Sbjct: 375 ---NMAALQKFFVEQGVWIRP----FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 100 bits (248), Expect = 1e-23
Identities = 68/473 (14%), Positives = 122/473 (25%), Gaps = 105/473 (22%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
++ +G+++ D+DGN +D IG++ ++
Sbjct: 28 QNAEAVHF----------FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKL 77
Query: 61 LGETMKKGTSFGAPCL-------LENVLAEMVIS-AVPSIEMVRFVNSGTEACMGVLRLA 112
+ + T P L L E ++S A + + + G+ + +
Sbjct: 78 VQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTI 137
Query: 113 RAF--------------------------TGRERIIKFEGCYHGHADPFLVKAGSGVATL 146
+ I+ F G +HG L S
Sbjct: 138 FMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHK 197
Query: 147 GLPDSPGVPK--------------GATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192
S P + +V L + K +A II+EP+
Sbjct: 198 IDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPI 257
Query: 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDLTTL 249
G DF +R I++++G + DEV TG + D+ T
Sbjct: 258 QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTF 317
Query: 250 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309
K + G E P P T G+P + +K
Sbjct: 318 SKKM--------MTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSN 369
Query: 310 LNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFAR 366
L G++D + I + G F + + N +
Sbjct: 370 AAHAGKVLLTGLLDLQARYPQFI--SRVRGRGTFCSFDTPDESIRN-------------K 414
Query: 367 FYRGMLEEGV----------YFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 409
+GV F P +L + +L
Sbjct: 415 LISIARNKGVMLGGCGDKSIRFRP--------TLVFRDHHAHLFLNIFSDILA 459
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 70.3 bits (171), Expect = 8e-14
Identities = 53/445 (11%), Positives = 109/445 (24%), Gaps = 58/445 (13%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD-------DQVLAALGETMKKGTS 70
+P ++ E P ++ D D A+ ++M+
Sbjct: 5 EPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM 64
Query: 71 FGAPCLLE----NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRER 120
G LAE V + + + G A + + R +
Sbjct: 65 RGDEAFSGSRSYYALAESV-KNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK 123
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-EN 179
++ F + G V + + ++ ++ D+ LE E
Sbjct: 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFK----GNFDLEGLERGIEEV 179
Query: 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-------MTGFRLA 232
+ I+ ++G L A+ I K+ ++ D R A
Sbjct: 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239
Query: 233 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP----------AGPMYQAG 282
+T + ++ A ++ M + Q G
Sbjct: 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299
Query: 283 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 342
+ L A L + ++L Q ++D ++ G F
Sbjct: 300 FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI-AQVQYLVDGLEEIGVVCQQAGGHAAFV 358
Query: 343 ---FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG------------- 386
P F + R + E G + + G
Sbjct: 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAV-EIGSFLLGRDPKTGKQLPCPAELLRLT 417
Query: 387 FTSLAHSSDDIQHTITAAEKVLRQI 411
++ + I A + V
Sbjct: 418 IPRATYTQTHMDFIIEAFKHVKENA 442
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 66.0 bits (159), Expect = 1e-12
Identities = 56/366 (15%), Positives = 92/366 (25%), Gaps = 42/366 (11%)
Query: 53 ADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109
+++ A+ + +G LE + AE E FV SGT +
Sbjct: 12 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETF-----GKEAALFVPSGTMGNQVSI 66
Query: 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169
+ + +A L VP
Sbjct: 67 MAHTQRGDEVILEADSHIFWYEVG--------AMAVLSGVMPHPVPGKNGAMDPDDVRKA 118
Query: 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + + I +E SG + + I I KE+G + D
Sbjct: 119 I----RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN 174
Query: 230 RLA--YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 287
+EY G + G RD +E A M G
Sbjct: 175 ASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 234
Query: 288 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347
LA I K K E + + K+ G+++ + T+
Sbjct: 235 VLAAAGIIALTK-------MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD 287
Query: 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAE 405
N F + GV T S +DI+ + E
Sbjct: 288 NLKVNAHG-----------FIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 336
Query: 406 KVLRQI 411
K+ R+
Sbjct: 337 KLFRKF 342
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 66.1 bits (160), Expect = 2e-12
Identities = 48/412 (11%), Positives = 101/412 (24%), Gaps = 45/412 (10%)
Query: 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 93
YID + G + + E ++ L++ E+ + +
Sbjct: 40 SSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYD---LKDKAKELF-----NYD 91
Query: 94 MVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 150
+ + G A + + + G+ + F +H V+ A + +
Sbjct: 92 YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTE 151
Query: 151 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 210
+ + + ++ I AI+ ++G L +
Sbjct: 152 KAFDSETYDDWKGDFDIKKLKEN--IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209
Query: 211 RITKENGALLIFDEVMTGFRLAYGG--------------AQEYFGVTPDLTTLGKIIGGG 256
I K++G ++ D + + + LT K
Sbjct: 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 269
Query: 257 LPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNP--LAMTAGIHTLKRLKEPGTYEYLNK 312
G R + I + + G M A + L+ E Y
Sbjct: 270 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIG 329
Query: 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 372
L + +AG + G + + P F R +
Sbjct: 330 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV- 388
Query: 373 EEGVYFAPSQFEAGFTSLAHSS-------------DDIQHTITAAEKVLRQI 411
E G + G A D + + A + +
Sbjct: 389 EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 61.0 bits (147), Expect = 8e-11
Identities = 59/410 (14%), Positives = 116/410 (28%), Gaps = 61/410 (14%)
Query: 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD-QVLAALGETMKK-GTSFGAPCLLE 78
+ S + + + DG+ I++ + +G A+ ++AA M G + +
Sbjct: 30 IITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86
Query: 79 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 138
++ F+ A G D +
Sbjct: 87 GTQDSHKEL---EQKLAAFLGMEDAILYSSCFDANGGLFE--------TLLGAEDAIISD 135
Query: 139 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198
A + + + D + K Y ++ A I + V G
Sbjct: 136 ALNHASII---DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGV 192
Query: 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA--QEYFGVTPD---LTTLGKII 253
I L + + + AL++ D+ + G EY V +T
Sbjct: 193 I----ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKA 248
Query: 254 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313
GG G R++++E + Y + + + L
Sbjct: 249 LGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWAN 308
Query: 314 TGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370
+ + + AG A HAI I M G + +F R
Sbjct: 309 ARQFREQMSAAGFTLAGADHAI----IPVMLG-----------------DAVVAQKFARE 347
Query: 371 MLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKVLRQI 411
+ +EG+Y + S AH+ + I + A ++ +Q+
Sbjct: 348 LQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 48.4 bits (114), Expect = 8e-07
Identities = 46/411 (11%), Positives = 101/411 (24%), Gaps = 70/411 (17%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSF 71
+ G + D +Y+ DY+G + H Q++ A + ++ G
Sbjct: 21 RRYPVAQGAGRWL-VADDRQYLNFSSNDYLG------LSH-HPQIIRAWQQGAEQFGIGS 72
Query: 72 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
G V+ + + + G R + F + +
Sbjct: 73 GGS---------------------GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAAN 111
Query: 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYET----LTAPFNDVSALENLFENNKGEIAAI 187
S A + NDV+ L L + +
Sbjct: 112 QAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMV 171
Query: 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL--AYGGAQEYFGVTPD 245
+ E V G AP + +++T+++ L+ D+ + G+ V P+
Sbjct: 172 VTEGVFSMDGDSAPLAEI----QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 227
Query: 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
L + G G+ A + + + T + +
Sbjct: 228 LLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPA--QAQALRASLAVIRSD 285
Query: 306 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 365
+ + L + + + S + A
Sbjct: 286 EGDARREKLAALITRFRAGVQDLPFTLADS-----------CSAIQPLIVGDNSRALQLA 334
Query: 366 RFYRGMLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKV 407
+ ++G + + + AH DI +
Sbjct: 335 EK---LRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 47.2 bits (111), Expect = 2e-06
Identities = 35/340 (10%), Positives = 87/340 (25%), Gaps = 24/340 (7%)
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 134
L N + E + T + + A ++ + H
Sbjct: 112 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK 171
Query: 135 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194
+ G + + V G V +EN + + +
Sbjct: 172 AVSFVGMNMRLV-----ETVLDGDRVYV------PVEDIENAIKKEIELGNRPCVLSTLT 220
Query: 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY---FGVTPDLTTLGK 251
+ I +I + I + Y + + V +++ K
Sbjct: 221 FFPPRNSDD--IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDK 278
Query: 252 IIGGGLPVGA-YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310
+ + G Y + ++ ++ + P + + + + ++ +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGRAS---ATPVVNTLVSLLSMGSKNYLELVKNQ 335
Query: 311 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370
L + + D KK G PV T R +
Sbjct: 336 KNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP-RGIKK 394
Query: 371 MLEEGVYFAPSQFEAGFT---SLAHSSDDIQHTITAAEKV 407
G + + ++ ++DI ++++ EK+
Sbjct: 395 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 44/364 (12%), Positives = 73/364 (20%), Gaps = 39/364 (10%)
Query: 50 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109
I A +V AL + L + V V +GT A L
Sbjct: 12 IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCL 71
Query: 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169
G + +
Sbjct: 72 SAMTPPWGNIYCHPASHINNDECGAPEFFSN-----------GAKLMTVDGPAAKLDIVR 120
Query: 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + + D + AI + K + L D
Sbjct: 121 LRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180
Query: 230 RLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 286
L G A+ + D + G G L A + S
Sbjct: 181 ALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK 240
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346
L N L QG+ G + GG + +
Sbjct: 241 MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLE---GLGGVEVLGGTEANILFCRLD 297
Query: 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF----TSLAHSSDDIQHTIT 402
+L+ G F ++ TS A +++D+ H +
Sbjct: 298 S------------------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLN 339
Query: 403 AAEK 406
Sbjct: 340 QVRL 343
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 42/339 (12%), Positives = 95/339 (28%), Gaps = 31/339 (9%)
Query: 76 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 135
+ N L + + ++ R N EA V+ + ++ + + H +
Sbjct: 51 FIHNQLPKFL-----GCDVARVTNGAREAKFAVM---HSLAKKDAWVVMDENCHYSSYVA 102
Query: 136 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195
+AG + T A + A +GE+ ++ GN
Sbjct: 103 AERAGLNI----------ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGN 152
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGG 255
G + ++ E L+ + R+ + K +
Sbjct: 153 YGNLPDVKKI----AKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGH--KSMAA 206
Query: 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 315
P+G G + + E+V Y+ + P E + +
Sbjct: 207 SGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDE 266
Query: 316 E--LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373
E + +K G G FF + K YR +
Sbjct: 267 EVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFH---AEVLYEISKKAKGGRFFLYRELKS 323
Query: 374 EGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 410
++ F ++ S +++ + + A ++++ +
Sbjct: 324 RKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 411 | |||
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.98 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.97 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.97 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.96 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.96 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.96 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.96 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.96 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.95 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.95 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.95 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.95 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.95 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.95 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.95 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.95 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.92 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.92 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.92 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.91 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.91 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.89 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.89 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.89 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.88 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.87 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.87 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.86 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.85 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.84 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.84 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.83 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.82 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.82 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.8 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.8 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.79 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.78 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.77 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.74 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.71 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.7 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.68 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.68 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.68 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.67 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.66 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.66 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.65 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.65 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.65 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.64 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.63 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.62 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.6 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.6 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.58 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.57 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.55 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.54 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.54 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.5 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.48 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.44 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.38 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.38 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.37 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.32 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.28 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.18 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.17 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.03 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.0 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=1.5e-67 Score=498.53 Aligned_cols=411 Identities=73% Similarity=1.233 Sum_probs=372.8
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++++|.|+..+.+|+++.+++|+++||.||++|+||.++++++++||+||+|.+|+.++++++............
T Consensus 17 ~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~~~~~~~~ 96 (427)
T d2gsaa_ 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENV 96 (427)
T ss_dssp SGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHH
T ss_pred cCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccccchhHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999997666667788889
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.+.+..+..+.++|++||+||++.|+++++.++++.+||.+.++|||.+..++..++.+......+..++.......
T Consensus 97 la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 176 (427)
T d2gsaa_ 97 LAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTA 176 (427)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHT
T ss_pred HHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCcc
Confidence 99999999888899999999999999999999999999999999999999999998888776666555655555544556
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
+...++++|++.+++.++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+++|||+|.+++.+++
T Consensus 177 ~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~ 256 (427)
T d2gsaa_ 177 NTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKF 256 (427)
T ss_dssp TEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHT
T ss_pred ceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhc
Confidence 77888999999999999998889999999999999999999999999999999999999999999999977999999999
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||+++++|+++||+|+|++++++++++.+.+.....+++|++++|++++++.++++.++++++.++++++++++++.
T Consensus 257 gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~ 336 (427)
T d2gsaa_ 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDG 336 (427)
T ss_dssp TCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999988876667788999999999999999999999899999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++..+++....+.+.|.++.+.+...++.++......+......+...|.++||++.|+....+.+++++|++|||++
T Consensus 337 L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~~~~~~l~~Te~dId~~ 416 (427)
T d2gsaa_ 337 LLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDAT 416 (427)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCTTCCHHHHHHH
T ss_pred HHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCcceeCCCCCCHHHHHHH
Confidence 99999999988888888888888887666666555555566666788999999999999987656667999999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++|++++++|
T Consensus 417 l~al~~al~~L 427 (427)
T d2gsaa_ 417 LAAARTVMSAL 427 (427)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHhC
Confidence 99999999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-59 Score=440.33 Aligned_cols=379 Identities=28% Similarity=0.429 Sum_probs=321.8
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCC--CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP--SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~--~~ 92 (411)
+|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.++++++.. ....++...++++.+.+..+ ..
T Consensus 22 ~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 101 (425)
T d1sffa_ 22 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFA 101 (425)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSC
T ss_pred CCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhccc
Confidence 58999999999999999999999999999999999999999999999998543 23447788999999999997 36
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCC---
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN--- 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 168 (411)
+.++|++||+||++.|+++++.++++.++|.+.++|||.+..+..+++........ +.... .....+.+
T Consensus 102 ~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 174 (425)
T d1sffa_ 102 KKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPG-------HVYRALYPCPL 174 (425)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCS-------SEEEECCCBGG
T ss_pred ceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccC-------CccccCCcccc
Confidence 79999999999999999999999999999999999999999999888764333211 11111 11111111
Q ss_pred -C------HHHHHHHH--HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 169 -D------VSALENLF--ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 169 -d------~~~l~~~~--~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
+ ....++.+ ....+++++|++||+++++|.+.++++|++.|+++|++||+++|+||+++|| |+|.+++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~ 254 (425)
T d1sffa_ 175 HGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAME 254 (425)
T ss_dssp GTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred ccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHH
Confidence 0 11222222 2245689999999999999999999999999999999999999999999999 999999999
Q ss_pred ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
++++.||++|+||+++||+|+|++++++++++.+. ...+++||+++|++|+++.++|+.++++++.+++++..++++
T Consensus 255 ~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~---~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 331 (425)
T d1sffa_ 255 QMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA---PGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLK 331 (425)
T ss_dssp GTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSC---TTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hcCCCccceecccccCCCcceEEEEEcHHHHHhhC---CCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999988776 345788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCCCH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSS 394 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~t~ 394 (411)
+.|+++..+++.+..+++.|++..+++....... .++......+.+.|+++|+++.+.+. +.+++ |+++|+
T Consensus 332 ~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~-----~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~ 406 (425)
T d1sffa_ 332 DGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHN-----KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIED 406 (425)
T ss_dssp HHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTT-----SBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCH
T ss_pred hhhhhhHhhCCceEEEEccccEEEEEEeccCccC-----CccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCH
Confidence 9999999999999999999999999996543222 14455678899999999999987653 34554 789999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 015230 395 DDIQHTITAAEKVLRQI 411 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~~ 411 (411)
++||+++++++++++++
T Consensus 407 ~eid~~l~~l~~al~ei 423 (425)
T d1sffa_ 407 AQIRQGLEIISQCFDEA 423 (425)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999874
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.7e-59 Score=432.81 Aligned_cols=364 Identities=30% Similarity=0.417 Sum_probs=321.2
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCC-CCC
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.+|+++.+++|+++||.||++|+||.++++++++||+||++.+|+.++++++.. ..+..+...++++.+.+..+ ..+
T Consensus 18 ~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 97 (387)
T d1vefa1 18 KHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELN 97 (387)
T ss_dssp CCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEE
T ss_pred CCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhccccce
Confidence 359999999999999999999999999999999999999999999999998543 34567888999999998887 568
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
++.|++||+||++.|+++++.++++.+|+.+..+|||.+..+...++.+....... + ...++..+|++|++.+
T Consensus 98 ~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~-----p--~~~~~~~~p~~d~~~l 170 (387)
T d1vefa1 98 RVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFL-----P--LVEPVEFIPYNDVEAL 170 (387)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGC-----S--CSSCEEEECTTCHHHH
T ss_pred eeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCC-----C--CCCCceEeCCCCHHHH
Confidence 99999999999999999999999999999999999999999998887643331111 1 1235678999999999
Q ss_pred HHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhh
Q 015230 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 252 (411)
Q Consensus 174 ~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~ 252 (411)
++.++ +++++|++||+++++|.+.++++|+++|+++|++||+++|+|||++|| |+|.+++.+++++.||+++++|+
T Consensus 171 ~~~~~---~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~ 247 (387)
T d1vefa1 171 KRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKA 247 (387)
T ss_dssp HHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGG
T ss_pred HHhcC---CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeeccc
Confidence 98875 589999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 253 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 253 ~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+++|+|++.+.+.++.++.+. +..+++|++++|++|+++.+.++.++++++.+++++..+++++.|+++. .+.+.
T Consensus 248 l~gG~~~~~~~~~~~~~~~~~---~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~--~~~v~ 322 (387)
T d1vefa1 248 LGGGVPLGVAVMREEVARSMP---KGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP--SPKIR 322 (387)
T ss_dssp GGTTSSCEEEEEEHHHHHTSC---TTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSC--CTTEE
T ss_pred CCCCccccccccceeeeeccc---cCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcC--CCceE
Confidence 999999999999999888776 4568899999999999999999999888999999999999999999874 35678
Q ss_pred EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHH
Q 015230 333 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~ 409 (411)
++++.|++..+++.+.. ...+.+.++++|+++.+.+.+.+++ |+++|+++||+++++++++++
T Consensus 323 ~vrg~Gl~~~ie~~~~~--------------~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 323 EVRGMGLMVGLELKEKA--------------APYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp EEEEETTEEEEEESSCS--------------HHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEeecceEEEEEEeCCc--------------hHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHhC
Confidence 89999999999995421 2467778889999988877676655 689999999999999999874
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=1e-57 Score=432.55 Aligned_cols=388 Identities=23% Similarity=0.313 Sum_probs=318.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
+|+++.+++|+++||.||++|+||.+++++.++||+||++.+|+.+++++.. ...+.++...+++++|.+..+ +.++
T Consensus 23 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~ 102 (431)
T d1zoda1 23 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDR 102 (431)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCE
T ss_pred CCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccce
Confidence 5999999999999999999999999999999999999999999999999964 234568888999999999886 7899
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCC---CCCCCc---eeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP---KGATYE---TLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~ 168 (411)
++|++||+||++.||++++.++++.+|+.+.++|||.+..++..++........+...+.. ...... .......
T Consensus 103 v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (431)
T d1zoda1 103 ALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYD 182 (431)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEEC
T ss_pred eeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchh
Confidence 9999999999999999999999999999999999999998887766543222222211110 000000 0000111
Q ss_pred C---HHHHHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC
Q 015230 169 D---VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 243 (411)
Q Consensus 169 d---~~~l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~ 243 (411)
+ .+.++..+. ..++++++|++||+++++|.+.++++|+++|+++|++||+++|+|||++|| |+|.+++.+++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~ 262 (431)
T d1zoda1 183 YLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT 262 (431)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred hhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCC
Confidence 2 333333333 245789999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015230 244 PDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 244 ~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (411)
||+++++|+++||+|++.+++.++..+.+.. ....+++|++++|++|+++.+.++.++++++.++..+..+++.+.+++
T Consensus 263 PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~-~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~ 341 (431)
T d1zoda1 263 PDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLD 341 (431)
T ss_dssp CSEEEECHHHHTTSSCEEEEECHHHHHHHHH-TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhccccccccccccceeeeeecchhhhhc-ccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhh
Confidence 9999999999999999999888887766542 233467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe----ccCCCcceee--ecCCCHHHH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF----APSQFEAGFT--SLAHSSDDI 397 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v----~~~~~~~~~~--~~~~t~~~i 397 (411)
+..+++.+.++++.|+++.+++...... ..+......++.+.++++|++. .++..+.+++ |+++|+++|
T Consensus 342 ~~~~~~~i~~vrG~Glm~~ie~~~~~~~-----~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~ei 416 (431)
T d1zoda1 342 LMERFDCIGDVRGRGLLLGVEIVKDRRT-----KEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEI 416 (431)
T ss_dssp HHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHH
T ss_pred hhhcCCCeEEEeecceEEEEEEecCCcc-----cCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHH
Confidence 9999999999999999999998643211 1133445678899999999853 3334445554 789999999
Q ss_pred HHHHHHHHHHHHhC
Q 015230 398 QHTITAAEKVLRQI 411 (411)
Q Consensus 398 ~~~i~~l~~~~~~~ 411 (411)
|+++++|+++++++
T Consensus 417 d~~~~~l~~al~~v 430 (431)
T d1zoda1 417 DLGLSLLGQAIERA 430 (431)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-57 Score=426.20 Aligned_cols=368 Identities=24% Similarity=0.348 Sum_probs=317.1
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
+.|+.+.+++|+|+||.||++|+||.+++++.++||+||++++|+.++++++... .+.+.....+++.+.+.. +.+.
T Consensus 22 p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (404)
T d2byla1 22 PLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-NYHK 100 (404)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH-TCSE
T ss_pred CCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc-cccc
Confidence 3589999999999999999999999999999999999999999999999985432 234455566666666654 7789
Q ss_pred EEEeCChHHHHHHHHHHHHhcc--------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 95 VRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~--------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
++|++||++|++.|+++++.++ ++..++.+..+|||.+..+....+.+.....+. + ....+..+|
T Consensus 101 v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~--p-----~~~~~~~~p 173 (404)
T d2byla1 101 VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG--P-----FMPGFDIIP 173 (404)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSC--S-----CCTTEEEEC
T ss_pred cccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCC--C-----CCCCeeEec
Confidence 9999999999999999998653 467899999999999988887776643332211 1 123467789
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
++|++++++.++. +++++|++||+++++|.+.++++|+++|+++|++||+++|+|||++|| |+|.+++++++++.||
T Consensus 174 ~~d~~~l~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PD 251 (404)
T d2byla1 174 YNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD 251 (404)
T ss_dssp TTCHHHHHHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred ccCHHHHHHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCC
Confidence 9999999999973 589999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 246 ~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
++|++|+++|| +|+|.+++++++.+.+. +..+++||+++|++|+++.++|+.++++++.++.+++..++++.|+++
T Consensus 252 i~~~gK~l~gG~~p~~av~~~~~i~~~~~---~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l 328 (404)
T d2byla1 252 IVLLGKALSGGLYPVSAVLCDDDIMLTIK---PGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL 328 (404)
T ss_dssp EEEECGGGGTTSSCCEEEEECHHHHTTSC---TTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTS
T ss_pred EEEECchhhCCCccceeeeechhhhhccC---CCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHhh
Confidence 99999999987 89999999999988776 456788999999999999999999999999999999999999999987
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~ 402 (411)
.. +.+.++++.|++..+++.+... ..+.++.+.|.++|+++.+.+.+.+++ |+++|+++||++++
T Consensus 329 ~~--~~i~~vRg~Gl~~~i~~~~~~~-----------~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~ 395 (404)
T d2byla1 329 PS--DVVTAVRGKGLLNAIVIKETKD-----------WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIE 395 (404)
T ss_dssp CT--TTEEEEEEETTEEEEEECCCSS-----------CCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHH
T ss_pred cc--ccceeeeecccEEEEEEecCCc-----------hhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHH
Confidence 43 5678899999999999865321 223678899999999998876666665 68999999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|++++++
T Consensus 396 ~l~~al~~ 403 (404)
T d2byla1 396 IINKTILS 403 (404)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-56 Score=421.12 Aligned_cols=390 Identities=24% Similarity=0.336 Sum_probs=324.0
Q ss_pred ccCcccccccCCCCCeE-EEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIV-FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENV 80 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~ 80 (411)
+||++.++.+. .|+. +.+++|+|+||.||++|+||.+++++.++||+||++.+|+.++++++... ..+.+...+
T Consensus 13 ~~~p~~~~~~~--~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~ 90 (429)
T d1s0aa_ 13 ILHPFTSMTSP--LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIE 90 (429)
T ss_dssp BCCTTCCSSSC--CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHH
T ss_pred cCCCcccCCCC--CCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHH
Confidence 67777777644 4553 78999999999999999999999999999999999999999999986432 345777888
Q ss_pred HHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhcc-----CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-C-CCC
Q 015230 81 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P-DSP 152 (411)
Q Consensus 81 l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~ 152 (411)
+++++.+..+ +.++++|++||+||++.|+++++.++ ++.++|.+.++|||.+..+...++........ + ...
T Consensus 91 l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~ 170 (429)
T d1s0aa_ 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLP 170 (429)
T ss_dssp HHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSC
T ss_pred HHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccc
Confidence 9999999887 78999999999999999999998663 45689999999999999998887753332111 1 011
Q ss_pred ---CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC-CCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc
Q 015230 153 ---GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228 (411)
Q Consensus 153 ---~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~-~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g 228 (411)
..+..........+.++++++++.+.+.++++++|++||++ +.+|.+.++++|+++|+++|++||+++|+||+++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 250 (429)
T d1s0aa_ 171 ENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG 250 (429)
T ss_dssp CCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccc
Confidence 11111111122222335777777777777899999999987 56778889999999999999999999999999999
Q ss_pred c-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC--CCcccccCCCCCHHHHHHHHHHHHHHhcC
Q 015230 229 F-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304 (411)
Q Consensus 229 ~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~a~~~~~l~~~~~~ 304 (411)
| |+|.+++.+++++.||+++++|++++| +|+|.+++++++.+.+... ....+++|++++|++++++.+.|+.++++
T Consensus 251 fGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~ 330 (429)
T d1s0aa_ 251 FGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG 330 (429)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC
T ss_pred ccccccccccccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccc
Confidence 9 999999999999999999999999876 8999999999998887642 34567889999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc
Q 015230 305 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 384 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 384 (411)
++.+++++.+++++++|+++. .++.+.++++.|++..+++..+. ...++.+.|.++|+++.+.+ +
T Consensus 331 ~~~~~~~~~g~~l~~~L~~l~-~~~~v~~vrg~Gl~~~~e~~~~~-------------~~~~~~~~~~~~Gl~~~~~g-~ 395 (429)
T d1s0aa_ 331 DWQQQVADIEVQLREQLAPAR-DAEMVADVRVLGAIGVVETTHPV-------------NMAALQKFFVEQGVWIRPFG-K 395 (429)
T ss_dssp HHHHHHHHHHHHHHHHHGGGG-GCTTEEEEEEETTEEEEEESSCB-------------CHHHHHHHHHHTTEECCCBT-T
T ss_pred cccchhhHHHHHHHHHHHHhc-cCCceEEEeecccEEEEEecCcc-------------cHHHHHHHHHHCCcEEEecC-C
Confidence 999999999999999998874 46788899999999999985431 13678999999999999876 5
Q ss_pred ceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 385 AGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 385 ~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+++ |+++|++|||+++++|+++++++
T Consensus 396 ~i~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 396 LIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred EEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 5665 68999999999999999998763
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=2.5e-55 Score=412.04 Aligned_cols=370 Identities=22% Similarity=0.323 Sum_probs=301.5
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHhhCCCCCEEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVPSIEMVR 96 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~v~ 96 (411)
.|+++.+++|.++||.||++|+||.+++++.++||+||++++|+.+++++.... .........+++.+....++.+.+.
T Consensus 21 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 100 (404)
T d1z7da1 21 IPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVL 100 (404)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEE
T ss_pred CCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhccccceee
Confidence 489999999999999999999999999999999999999999999999985322 2222233344444444444788999
Q ss_pred EeCChHHHHHHHHHHHHhcc--------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 97 FVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 97 ~~~~g~~a~~~al~~~~~~~--------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
|+++|++|++.|+++++.+. ....++.+..+|||.+.......+........ ......+...|.+
T Consensus 101 ~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 173 (404)
T d1z7da1 101 MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF-------GPFAPQFSKVPYD 173 (404)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------------CEEEECTT
T ss_pred eeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCC-------CCCCccccccccc
Confidence 99999999999999987653 23579999999999887777666553332111 0112356778888
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
+.+.++..+. ++++++|++||+++++|.+.++++|+++|+++|++||+++|+|||++|| |+|.+++++++++.|||+
T Consensus 174 ~~~~l~~~~~--~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDiv 251 (404)
T d1z7da1 174 DLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI 251 (404)
T ss_dssp CHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred hHHHHHHHhc--CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEE
Confidence 9998888776 4689999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 015230 248 TLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 248 ~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
|+||++++| +|+|.+++++++.+.+. ...+++||+++|++|+++.+.++.+.++++.+++.+...++.+.+++...
T Consensus 252 t~gK~l~gG~~p~~~v~~~~~i~~~~~---~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (404)
T d1z7da1 252 LLGKALSGGHYPISAVLANDDIMLVIK---PGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELK 328 (404)
T ss_dssp EECGGGGTTSSCCEEEEECHHHHTTCC---TTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcccccCCCCCcccccchHHHHccCC---CCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHh
Confidence 999999987 89999999999988876 45688899999999999999999998899999999999999999999988
Q ss_pred hcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHH
Q 015230 327 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAA 404 (411)
Q Consensus 327 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l 404 (411)
+++.+.++++.|++..+++.++... ..++.+.|.++|+++.+.+.+.+++ |+++|+++|++++++|
T Consensus 329 ~~~~v~~vrg~Gl~~~i~~~~~~~~------------~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l 396 (404)
T d1z7da1 329 DSKIVRDVRGKGLLCAIEFKNELVN------------VLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 396 (404)
T ss_dssp TCTTEEEEEEETTEEEEEECTTTCC------------HHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred cCCCeEEEEeeCcEEEEEEcCCccc------------HHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHH
Confidence 9999999999999999999654321 2568899999999999887777765 6889999999999999
Q ss_pred HHHHHhC
Q 015230 405 EKVLRQI 411 (411)
Q Consensus 405 ~~~~~~~ 411 (411)
+++++++
T Consensus 397 ~~alk~~ 403 (404)
T d1z7da1 397 VKTVKFF 403 (404)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999864
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2e-54 Score=411.60 Aligned_cols=372 Identities=17% Similarity=0.177 Sum_probs=302.1
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-----C--CCCCCHHHHHHHHHHHhhCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----S--FGAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-----~--~~~~~~~~~~l~~~l~~~~~ 90 (411)
+|+++.+++|+++||.||++|+||.++++++++||+||+|.+++.++++... . ...+..+.+++++.+.+..+
T Consensus 35 ~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~ 114 (461)
T d1ohwa_ 35 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAP 114 (461)
T ss_dssp CCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCC
T ss_pred CCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhc
Confidence 5888999999999999999999999999999999999999999998877621 1 12335566778888887776
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhc--------------------------cCCcEEEEEeCCcCCCchhhhhhcCCCC
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAF--------------------------TGRERIIKFEGCYHGHADPFLVKAGSGV 143 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~--------------------------~~~~~vi~~~~~~~~~~~~~~~~~g~~~ 143 (411)
+.++++|++||+||++.||++++.+ +++.+||.+.++|||.+..++.+++.+.
T Consensus 115 ~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~ 194 (461)
T d1ohwa_ 115 KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKA 194 (461)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCH
T ss_pred cCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcc
Confidence 7899999999999999999998764 3355899999999999999999988754
Q ss_pred cccCC-CCCCCCC-CCCCCceeecC---------CCCHHHHHHHHH---cCCCcEEEEEEcccCCCCCccCCCHHHHHHH
Q 015230 144 ATLGL-PDSPGVP-KGATYETLTAP---------FNDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209 (411)
Q Consensus 144 ~~~~~-~~~~~~~-~~~~~~~~~~~---------~~d~~~l~~~~~---~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i 209 (411)
..... +...... ........... .++.+++++.+. .+++++++|++||+++++|.+.++++|+++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~l 274 (461)
T d1ohwa_ 195 IHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 274 (461)
T ss_dssp HHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHH
T ss_pred cccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHH
Confidence 33211 1111110 00000000000 012445555543 3567899999999999999999999999999
Q ss_pred HHHHHHhCCEEEEecccccc-ccccCccccccCCC--cchhhhhhhccCCcc-cccccccHHHHHHhcCCCCcccccCCC
Q 015230 210 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKIIGGGLP-VGAYGGRRDIMEMVAPAGPMYQAGTLS 285 (411)
Q Consensus 210 ~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~--~d~~~~sK~~~~G~~-~g~~~~~~~~~~~~~~~~~~~~~~t~~ 285 (411)
+++|++||++||+|||++|| |+|.+++++++++. ||+++++|++++|.+ .+.+. .......+++|+.
T Consensus 275 r~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~~~~~~~~---------~~~~~~~~~~T~~ 345 (461)
T d1ohwa_ 275 RDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEF---------RPNAPYRIFNTWL 345 (461)
T ss_dssp HHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEECGGG---------SCSSTTSSCCSCS
T ss_pred HHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhccccccccccccc---------ccccccccccccc
Confidence 99999999999999999999 99999999999985 999999999997644 33322 2223456788999
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeecceEEEEEecCCCCCcchhcccchHHH
Q 015230 286 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364 (411)
Q Consensus 286 ~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (411)
++|++++++.++++.++++++.+++++.++++.++|+++..+++ .+.++++.|+++.+++. +....
T Consensus 346 g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~-------------~~~~~ 412 (461)
T d1ohwa_ 346 GDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP-------------DESIR 412 (461)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS-------------SHHHH
T ss_pred cccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEcC-------------CHHHH
Confidence 99999999999999999899999999999999999999998886 67899999999999983 34556
Q ss_pred HHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 365 ARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 365 ~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.++.+.+.++|+++.+.+.+.+|+ |+++|++++|.++++|++++++.
T Consensus 413 ~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 413 NKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp HHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 789999999999999987777766 78999999999999999999874
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-37 Score=288.40 Aligned_cols=343 Identities=20% Similarity=0.265 Sum_probs=260.0
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCCCC------CCHHHHHHHHHHHhhCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFGA------PCLLENVLAEMVISAVP 90 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~~~------~~~~~~~l~~~l~~~~~ 90 (411)
..++.+++|+++++.||++|+||.|+ +|+|+ .||++++++.+++++ +.+.+. ..+..+++.+.+++.+
T Consensus 28 ~~~i~~~~g~~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~- 103 (401)
T d1fc4a_ 28 ERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL- 103 (401)
T ss_dssp CCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-
T ss_pred ceeccCCCCCeEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh-
Confidence 44678999999999999999999999 99999 699999999999998 333322 3666777777777776
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
+.+++++++||++|+..+++ .+.+++++|+.+...|.......... ..++..++|+|.
T Consensus 104 g~e~al~~~SG~~An~~~i~---~l~~~~d~i~~d~~~h~s~~~G~~~~-------------------~a~~~~~~~~d~ 161 (401)
T d1fc4a_ 104 GMEDAILYSSCFDANGGLFE---TLLGAEDAIISDALNHASIIDGVRLC-------------------KAKRYRYANNDM 161 (401)
T ss_dssp TCSEEEEESCHHHHHHTTHH---HHCCTTCEEEEETTCCHHHHHHHHTS-------------------CSEEEEECTTCH
T ss_pred cCCceEEecchhhhhHHHHH---HhcCCCcEEEeCCcchHHHHcccccc-------------------CceEEEEcCCCh
Confidence 78899999999999999998 45566666666666665433222222 235667888898
Q ss_pred HHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc--cCccccccCCC--
Q 015230 171 SALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA--YGGAQEYFGVT-- 243 (411)
Q Consensus 171 ~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g--~~~~~~~~~~~-- 243 (411)
+++++.++. .+.+..++++|+++++.|.+.| +++|+++|++||++||+||+|+....| ..+..++++..
T Consensus 162 ~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~ 237 (401)
T d1fc4a_ 162 QELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGR 237 (401)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTC
T ss_pred HHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCC
Confidence 888887764 3456689999999999999999 999999999999999999999844222 23345555553
Q ss_pred cch--hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHH
Q 015230 244 PDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 320 (411)
Q Consensus 244 ~d~--~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 320 (411)
+|+ .|+||+++ |.+.|++.+++++++.++...+.+.+ +.+.+|..++++..+++.+.. ++++++++++..++++.
T Consensus 238 ~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~-s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~ 315 (401)
T d1fc4a_ 238 VDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLF-SNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQ 315 (401)
T ss_dssp CSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHH-SCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhh-cCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhh
Confidence 444 48999996 44577888999999888643333333 556677777778888887766 77889999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc-------eee--ecC
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLA 391 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~-------~~~--~~~ 391 (411)
+.+... ... ...+.++.+.+ ++...+..+.+.|.++||++.+..++. +|+ +..
T Consensus 316 l~~~g~----~~~-~~~~pIv~v~~-------------~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~ 377 (401)
T d1fc4a_ 316 MSAAGF----TLA-GADHAIIPVML-------------GDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAA 377 (401)
T ss_dssp HHHTTC----CBC-CSSSSEEEEEE-------------ECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTT
T ss_pred hcccCC----ccC-CCCCCEEEEEE-------------CCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCC
Confidence 887632 111 12245555555 345556789999999999998766543 455 688
Q ss_pred CCHHHHHHHHHHHHHHHHhC
Q 015230 392 HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~~ 411 (411)
+|++|||+++++|+++.+++
T Consensus 378 hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 378 HTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-35 Score=274.04 Aligned_cols=337 Identities=17% Similarity=0.192 Sum_probs=259.2
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCC------CCCCCHHHHHHHHHHHhhCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS------FGAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~------~~~~~~~~~~l~~~l~~~~~ 90 (411)
+..+.++.|.++. .+|++++||.|+ +|+|+ .||++++++.+++++ +.+ ..+..+.+.++.+.+++.+
T Consensus 22 ~~~~~~~~g~~i~-~~g~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~- 96 (383)
T d1bs0a_ 22 RYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL- 96 (383)
T ss_dssp CCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-
T ss_pred ccccCCCCCCeEE-ECCeEEEEEEcc---cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc-
Confidence 3457899999997 899999999999 99999 799999999999998 322 2345777888888888877
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
+.+.+++++||..|+..++. .+.+++++++.+...|.......... ...+..++|+|+
T Consensus 97 g~e~al~~~SG~~an~~~i~---al~~~~d~v~~d~~~h~si~~g~~~~-------------------~~~~~~~~hnd~ 154 (383)
T d1bs0a_ 97 GYSRALLFISGFAANQAVIA---AMMAKEDRIAADRLSHASLLEAASLS-------------------PSQLRRFAHNDV 154 (383)
T ss_dssp TCSEEEEESCHHHHHHHHHH---HHCCTTCEEEEETTCCHHHHHHHHTS-------------------SSEEEEECTTCH
T ss_pred CCCceEEecccchhhHHHHH---hhcCCCceEEeeccccHHHhhccccC-------------------CCcceEecchHH
Confidence 68899999999999999998 56677788888888886554433222 235778999999
Q ss_pred HHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcch--
Q 015230 171 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL-- 246 (411)
Q Consensus 171 ~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~-- 246 (411)
+++++.+.+.+.+..+|++|+++++.|.+.| +++|.++|++|++++++||+|+ |. ........++++..+++
T Consensus 155 ~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~ 230 (383)
T d1bs0a_ 155 THLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLV 230 (383)
T ss_dssp HHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEE
T ss_pred HHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccc
Confidence 9999999987778889999999999999999 9999999999999999999997 33 22233345677777664
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~ 323 (411)
.++||++++ ..|++.++.+.++.++.....+.+ +...+|..++++.++++.+.. +..++++.++..++++.|++
T Consensus 231 ~t~~ka~g~--~Gg~v~~~~~~~~~l~~~~~~~~~-s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 307 (383)
T d1bs0a_ 231 VTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIY-STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD 307 (383)
T ss_dssp EESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHS-SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccc--cccccccchhHHHHHHhhchhhhh-cccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 468888875 467788888888888654344443 556677777888888887765 45566777777888777765
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc-------eee--ecCCCH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSS 394 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~-------~~~--~~~~t~ 394 (411)
+ ++.. ....+.++.+.+ ++...+.++.+.|+++||++.+..++. +|+ +..+|+
T Consensus 308 ~----g~~~-~~~~s~Ii~v~~-------------g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~ 369 (383)
T d1bs0a_ 308 L----PFTL-ADSCSAIQPLIV-------------GDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEM 369 (383)
T ss_dssp S----SCEE-CSCCSSBCCEEE-------------ESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCH
T ss_pred c----CCcc-CCCCCCEEEEEE-------------CCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCH
Confidence 5 3221 112233444433 445567899999999999998766543 555 688999
Q ss_pred HHHHHHHHHHHHH
Q 015230 395 DDIQHTITAAEKV 407 (411)
Q Consensus 395 ~~i~~~i~~l~~~ 407 (411)
+|||++++.|..+
T Consensus 370 edid~l~~~L~~~ 382 (383)
T d1bs0a_ 370 QDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=4.7e-32 Score=249.69 Aligned_cols=339 Identities=20% Similarity=0.180 Sum_probs=249.8
Q ss_pred EEEeecCcEEE------ecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCC------CCCCHHHHHHHHHHH
Q 015230 21 VFDSVKGSHMW------DIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVI 86 (411)
Q Consensus 21 ~~~~~~g~~~~------~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~------~~~~~~~~~l~~~l~ 86 (411)
.+.+..|.+.. +.++++++||.|| +|+|+ .||++++++.+++++ +.+. .+....++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~FsSn---dYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA 100 (396)
T d2bwna1 24 DIEREKGAFPKAQWNRPDGGKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIA 100 (396)
T ss_dssp EEEECTTSTTEEEEECTTSCEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHH
T ss_pred ccccccCCCCcceEeecCCCCeEEEEEEcc---cccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHH
Confidence 45566664321 1246899999999 99999 999999999999998 3322 345778888888888
Q ss_pred hhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 87 SAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 87 ~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
+.+ +.+..++.++|..|+..++... ...+++++|+.+.-.|........+++. ++..++
T Consensus 101 ~~~-g~e~all~~sG~~An~~~i~~l-~~~~~~d~i~~D~~~Hasi~~g~~ls~a-------------------~~~~f~ 159 (396)
T d2bwna1 101 GLH-QKEAALVFSSAYNANDATLSTL-RVLFPGLIIYSDSLNHASMIEGIKRNAG-------------------PKRIFR 159 (396)
T ss_dssp HHT-TCSEEEEESCHHHHHHHHHHHH-HHHSTTCEEEEETTCCHHHHHHHHHSCC-------------------CEEEEC
T ss_pred HHh-CCCceeeeecchHHHHHHHHHH-hcccCCCceeehhhhhhccchhhhcccc-------------------CceEee
Confidence 888 6788888899999999999743 2235677888888888655444444433 577789
Q ss_pred CCCHHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCC
Q 015230 167 FNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVT 243 (411)
Q Consensus 167 ~~d~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~ 243 (411)
|||++++++.+++. +....+|++|.++++.|.+.| +++|.++|++|++.|++||+|+ |. .....+..++++..
T Consensus 160 Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~ 235 (396)
T d2bwna1 160 HNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM 235 (396)
T ss_dssp TTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCG
T ss_pred cchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCc
Confidence 99999999888763 356678999999999999999 9999999999999999999996 55 22223334455543
Q ss_pred --cc--hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHH
Q 015230 244 --PD--LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGE 316 (411)
Q Consensus 244 --~d--~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~ 316 (411)
.| +.||||++++ -.|++++++++++.++.....+.+ +...+|..++++.++++++.. ++.++++..+.++
T Consensus 236 ~~~di~~gTlsKa~g~--~Gg~v~~~~~~i~~l~~~~~~~if-Stalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~ 312 (396)
T d2bwna1 236 HRIDIFNGTLAKAYGV--FGGYIAASARMVDAVRSYAPGFIF-STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKV 312 (396)
T ss_dssp GGCSEEEEESSSTTCS--CCEEEEECHHHHHHHHHHCHHHHT-SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred eeeeeeeecccccccc--cccccchhHHHHHHHHhhcchhhh-cccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 24 3489999996 345678899999988754444444 446667778888888888765 4456777888889
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCCcc-------eee
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEA-------GFT 388 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~-------~~~ 388 (411)
+++.++++. .... ...+.++.+.+ ++...+..+++.|+ ++||++.+..+|. +|+
T Consensus 313 ~~~~l~~~g----~~~~-~~~spIvpv~i-------------g~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi 374 (396)
T d2bwna1 313 LKMRLKALG----MPII-DHGSHIVPVVI-------------GDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRF 374 (396)
T ss_dssp HHHHHHHHT----CCBC-CCSSSCEEEEC-------------CCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEE
T ss_pred HHHHHHhcC----CCcC-CCCCCEEEEEe-------------CCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEE
Confidence 999888773 2211 12244555544 44556677887754 6899998876553 455
Q ss_pred --ecCCCHHHHHHHHHHHHHHH
Q 015230 389 --SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 389 --~~~~t~~~i~~~i~~l~~~~ 408 (411)
+..+|++|||+++++|++++
T Consensus 375 ~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 375 TPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHC
T ss_pred EeCccCCHHHHHHHHHHHHHhC
Confidence 68999999999999999863
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.5e-32 Score=251.79 Aligned_cols=333 Identities=17% Similarity=0.181 Sum_probs=224.7
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.+|++++|+..+ ++ .+ .++.+++++.++++++. .|+ +..++++.+++++.+..+ .+++|++|+|+++|
T Consensus 28 ~~G~~vi~l~~g---~p-~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~a 103 (382)
T d1b5pa_ 28 RQGVDLVALTAG---EP-DFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQA 103 (382)
T ss_dssp HTTCCCEECCCS---SC-SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHH
T ss_pred hCCCCeEECCCC---CC-CCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHH
Confidence 568899999888 44 34 68899999999998743 332 346788999999988775 57899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.. ...++.|++.+|+|++. .......|..+..++.....++.. |++++++.++ +++
T Consensus 104 l~~~~~~l--~~~gd~vl~~~P~y~~~-~~~~~~~g~~~~~v~~~~~~~~~~------------d~~~l~~~~~---~~~ 165 (382)
T d1b5pa_ 104 LFNLFQAI--LDPGDEVIVLSPYWVSY-PEMVRFAGGVVVEVETLPEEGFVP------------DPERVRRAIT---PRT 165 (382)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCTHH-HHHHHHTTCEEEEEECCGGGTTCC------------CHHHHHTTCC---TTE
T ss_pred HHHHHHHh--CCCCCEEEECCCCcHHH-HHHHHHhcCeEEEEecccccccCC------------CHHHHHHhCC---CCC
Confidence 99999742 34567899999999864 344445555444433222222211 7888887665 345
Q ss_pred EE-EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc--cCCCcchhhhhhhcc-CCccc
Q 015230 185 AA-IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY--FGVTPDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 185 ~~-vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~--~~~~~d~~~~sK~~~-~G~~~ 259 (411)
++ ++++| +|++|.+.. .+.+++|.++|++|+++||+||+|.++ ..+....... .+....+.|+||.|+ +|+|+
T Consensus 166 ~~i~~~~P-~NPTG~~~s-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~ 243 (382)
T d1b5pa_ 166 KALVVNSP-NNPTGAVYP-KEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRI 243 (382)
T ss_dssp EEEEEESS-CTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCC-CCCcchhCC-HHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhhe
Confidence 54 55555 555565543 455999999999999999999999987 4443221111 111222458999998 89999
Q ss_pred ccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-c----CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 260 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E----PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
||+++++++++.+.. .........+.+.+.++.+.+.... . +..++.++++.+.+.+.+++. ++....
T Consensus 244 G~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~ 316 (382)
T d1b5pa_ 244 GYACGPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVR 316 (382)
T ss_dssp EEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCC
T ss_pred EEEEECHHHHHHHHH---HHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc----CCeEec
Confidence 999999998877652 1122244455555555544443211 1 233344444444444444443 444333
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
...|+++|+++.+.. .+...+.+.|.++||.+.|+. .+.+|++++.+++++++++++|++++
T Consensus 317 p~gg~~~~~~~~~~~------------~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 317 PSGAFYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp CSBTTEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred CCceEEEeEeCCCCC------------CCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 456889999884321 123678889999999999973 34689999889999999999998753
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.98 E-value=1.1e-31 Score=250.51 Aligned_cols=337 Identities=12% Similarity=0.108 Sum_probs=226.6
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.+|+.++||..| +| ++ .++.+++++.++++.+. .|+ +..++++.+++++.+..+ .+++|++|+|++++
T Consensus 27 ~~g~~vi~l~~G---~p-~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~a 102 (388)
T d1j32a_ 27 AEGIDVCSFSAG---EP-DFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102 (388)
T ss_dssp TTTCCCEECCCS---SC-SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCC---CC-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHH
Confidence 468889999888 44 34 67899999999998743 343 335788999999988765 57899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.. ..+++.|++.+|+|...... ....+.....++.....++.. |++++++.++ .++
T Consensus 103 l~~~~~~~--~~~gd~Vlv~~P~y~~~~~~-~~~~~~~~v~~~~~~~~~~~~------------d~~~l~~~~~---~~~ 164 (388)
T d1j32a_ 103 IFNLMLAM--IEPGDEVIIPAPFWVSYPEM-VKLAEGTPVILPTTVETQFKV------------SPEQIRQAIT---PKT 164 (388)
T ss_dssp HHHHHHHH--CCTTCEEEEESSCCTHHHHH-HHHTTCEEEEECCCGGGTTCC------------CHHHHHHHCC---TTE
T ss_pred HHHHHHHH--hCCCCEEEEcCCCcHHHHHH-HHHhcCeEEEEecccccccCC------------CHHHHHHhCC---CCC
Confidence 99998742 45678899999999864433 333444333333322222211 8999998876 244
Q ss_pred E-EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc-----CCCcchhhhhhhcc-C
Q 015230 185 A-AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-----GVTPDLTTLGKIIG-G 255 (411)
Q Consensus 185 ~-~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~-----~~~~d~~~~sK~~~-~ 255 (411)
+ .++++| +|++|...+ .+.+++|.++|++||++||+||+|..+ ..+.. ...... +...-+.||||.++ +
T Consensus 165 ~~~~~~~P-~NPTG~~~~-~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~ 242 (388)
T d1j32a_ 165 KLLVFNTP-SNPTGMVYT-PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp EEEEEESS-CTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred eEEEECCC-CCCCCcccc-hhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcc
Confidence 4 455555 555665544 455999999999999999999999866 33321 111100 11222458999998 8
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
|+|+||+++++++++.+.. .........+..++.++...++..++ ++.++.++++.+.+.+.|++. .+....
T Consensus 243 GlRvG~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g~~~~ 316 (388)
T d1j32a_ 243 GWRVGFLAGPVPLVKAATK---IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM---PGLECP 316 (388)
T ss_dssp TTCCEEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC---TTCBCC
T ss_pred hhHeEEEEECHHHHHHHHH---hhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC---CCCEec
Confidence 9999999999999887752 22233556677777766666543221 334445555555555555443 133333
Q ss_pred EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 334 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
....|+++|+++..... +..++++.| .++||.+.|+. .+.+|++++.+++++++++++|++++
T Consensus 317 ~p~gg~~l~~~l~~~~~------------~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l 384 (388)
T d1j32a_ 317 KPDGAFYMFPSIAKTGR------------SSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFL 384 (388)
T ss_dssp CCCBTTEECCBCGGGTC------------CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCC------------CHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 34567888887753211 124555555 46699999973 45689999899999999999999998
Q ss_pred HhC
Q 015230 409 RQI 411 (411)
Q Consensus 409 ~~~ 411 (411)
+.+
T Consensus 385 ~~l 387 (388)
T d1j32a_ 385 HGI 387 (388)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=2.9e-30 Score=241.26 Aligned_cols=334 Identities=14% Similarity=0.104 Sum_probs=220.8
Q ss_pred CCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~ 105 (411)
++.+||+..+ .+ ++ .++.+++++.++++++. .|+ +..++++++++++.+..+ ..++|++|+|+++++
T Consensus 24 ~~dvi~l~~g---~p-~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l 99 (388)
T d1gdea_ 24 MKDVISLGIG---EP-DFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 99 (388)
T ss_dssp CTTCEECCCC---SC-CSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred CCCeEECCCC---CC-CCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHH
Confidence 4568998877 33 34 68889999999998842 343 346788999999876543 467899999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++. ...+++.|++.+|+|.... ......|..+..++.....++.. |++++++.++ ++++
T Consensus 100 ~~~~~~--l~~~gd~vlv~~P~y~~~~-~~~~~~g~~~~~~~~~~~~~~~~------------d~~~l~~~~~---~~~~ 161 (388)
T d1gdea_ 100 LMGLSA--FLKDGEEVLIPTPAFVSYA-PAVILAGGKPVEVPTYEEDEFRL------------NVDELKKYVT---DKTR 161 (388)
T ss_dssp HHHHTT--TCCTTCEEEEEESCCTTHH-HHHHHHTCEEEEEECCGGGTTCC------------CHHHHHHHCC---TTEE
T ss_pred HHHHHH--hcCCCCEEEECCCCcHHHH-HHHHHcCCEEEEeecccccCCCC------------CHHHHHHhCc---cCCe
Confidence 998873 2356788999999998654 44455555554443321122111 8999988876 3455
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-CccccccCCCc----chhhhhhhcc-CCcc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTP----DLTTLGKIIG-GGLP 258 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~~~~~----d~~~~sK~~~-~G~~ 258 (411)
++++...+|++|.... .+.+++|.++|++|+++||+||+|.++ ..+. ..........+ .+.||||.++ +|+|
T Consensus 162 ~i~~~~P~NPtG~~~s-~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 240 (388)
T d1gdea_ 162 ALIINSPCNPTGAVLT-KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 240 (388)
T ss_dssp EEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGC
T ss_pred EEEECCCcCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCcccc
Confidence 5554444555665544 555999999999999999999999877 4332 11111111112 2458999998 8999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+||+++++++++.+.. .........+.+.+.++.++++.... ++.+..++++...+.+.|+. .+.....
T Consensus 241 ~G~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~ 313 (388)
T d1gdea_ 241 LGFVAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE----MGLPTVK 313 (388)
T ss_dssp CEEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCC
T ss_pred EEEEEeeccchhhhhh---ccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh----ccccccC
Confidence 9999999888777652 22233555566666666655532111 22333344444444444433 3444334
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
...|+++|+++.+.. .+..++++.| +++||.+.|+. .+.+|++++.+++++++++++|+++
T Consensus 314 p~gg~fl~~~l~~~~------------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~ 381 (388)
T d1gdea_ 314 PKGAFYIFPRIRDTG------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERV 381 (388)
T ss_dssp CCBTTEECCBCGGGT------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCC------------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 456888888874321 1225666665 56699999873 3458999989999999999999999
Q ss_pred HHh
Q 015230 408 LRQ 410 (411)
Q Consensus 408 ~~~ 410 (411)
+++
T Consensus 382 l~e 384 (388)
T d1gdea_ 382 LKE 384 (388)
T ss_dssp HHH
T ss_pred HHh
Confidence 986
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.97 E-value=5e-30 Score=239.85 Aligned_cols=359 Identities=14% Similarity=0.103 Sum_probs=222.8
Q ss_pred CCCCeEEEeecCcEEEe-------cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CC-CCCCHHHHHHHHHH
Q 015230 16 GGQPIVFDSVKGSHMWD-------IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF-GAPCLLENVLAEMV 85 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~-------~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~-~~~~~~~~~l~~~l 85 (411)
+|+.++-+++.++..|| ..|+.+++|..+ .+ .+ .++.+++|+.++++.+. +| .+..++++++++++
T Consensus 4 ~f~~~~~r~~~~s~k~~~~~~~~~~~g~~vi~l~~g---~p-df~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~ 79 (394)
T d1c7na_ 4 DFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVA---DM-EFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWM 79 (394)
T ss_dssp CSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSS---SC-SSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCHHHHHHHHHhHhcCCCeEEccCC---CC-CCCCCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHH
Confidence 34444444455554454 357889998777 44 45 78999999999998852 23 23467889999999
Q ss_pred HhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCce
Q 015230 86 ISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYET 162 (411)
Q Consensus 86 ~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 162 (411)
.+.++ .+++|++|+|+++++..+++. ...+++.|++.+++|+..........+. ....+...... .
T Consensus 80 ~~~~g~~~~~~~I~vt~G~~~al~~~~~~--~~~pgd~vi~~~p~~~~~~~~~~~~g~~-~v~~~~~~~~~--------~ 148 (394)
T d1c7na_ 80 KDRHQWDIQTDWIINTAGVVPAVFNAVRE--FTKPGDGVIIITPVYYPFFMAIKNQERK-IIECELLEKDG--------Y 148 (394)
T ss_dssp HHHHCCCCCGGGEEEESSHHHHHHHHHHH--HCCTTCEEEECSSCCTHHHHHHHTTTCE-EEECCCEEETT--------E
T ss_pred HHhcCCCCCCcceEeeccchhhhhhhhcc--ccccccccccccCcccchhhHHhhhhhc-ccccccccccc--------c
Confidence 88765 588999999999999999974 3456788889888887644433333332 22211100000 0
Q ss_pred eecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc-cc-
Q 015230 163 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EY- 239 (411)
Q Consensus 163 ~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~-~~- 239 (411)
.. .|.+.++..+.. .++++++++..+|++|.+.+ .+.+++|.++|++|+++||+||+|.++ ..+..... ..
T Consensus 149 ~~---~d~~~~~~~~~~--~~~~~i~l~~P~NPTG~v~s-~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~ 222 (394)
T d1c7na_ 149 YT---IDFQKLEKLSKD--KNNKALLFCSPHNPVGRVWK-KDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI 222 (394)
T ss_dssp EE---CCHHHHHHHHTC--TTEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cc---chhhhhhhhhcc--ccceEEEecccccccceecc-HHHhhhhhccccccceeEeccccccccccCCccccchhhh
Confidence 00 167777766652 35666555555556666554 444999999999999999999999987 43321111 00
Q ss_pred ----cCCCcchhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHH
Q 015230 240 ----FGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLN 311 (411)
Q Consensus 240 ----~~~~~d~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~ 311 (411)
......+.++||.++ +|+|+||+++ ++.+.+.+..... ............+++........+ +++++.++
T Consensus 223 ~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (394)
T d1c7na_ 223 DEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRD--ATSGMPFTTLGYKACEICYKECGKWLDGCIKVID 300 (394)
T ss_dssp CHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHH--HTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hcccccceeecccccccccccccccccccccChhhhhhhhhhhh--hccccccccccchhhhhhhcchhhhhcccccccc
Confidence 111122448999999 7999999865 4556565542111 111122223333333333222111 33444455
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------Cc
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FE 384 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~ 384 (411)
++.+.+.+.++.... ++.......|+++|+++..... +..++++.|.++ ||.+.||. .+
T Consensus 301 ~~~~~~~~~l~~~~~--~~~~~~p~g~~~~~~~~~~~~~------------~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~ 366 (394)
T d1c7na_ 301 KNQRIVKDFFEVNHP--EIKAPLIEGTYLQWIDFRALKM------------DHKAMEEFMIHKAQIFFDEGYIFGDGGIG 366 (394)
T ss_dssp HHHHHHHHHHHHHCT--TSBCCCCSBSSEEEEECGGGCC------------CHHHHHHHHHHTTCCCCEEGGGGCGGGTT
T ss_pred hhhhhhhhhhhcccc--ceeecCCCceeEEEEECCCCCC------------CHHHHHHHHHHhCCEEEEcchhhCCCCCC
Confidence 555555555544321 2222233457788998854221 236788887766 99998863 33
Q ss_pred ceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 385 AGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 385 ~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+|++++.++++|++++++|++++++|
T Consensus 367 ~iRis~~~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 367 FERINLAAPSSVIQESLERLNKALKDL 393 (394)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 589999889999999999999999874
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.96 E-value=5.4e-28 Score=227.71 Aligned_cols=354 Identities=14% Similarity=0.063 Sum_probs=226.7
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CC---CCCCHHHHHHHHHHHhhCC---C-CCEEEEeCChHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SF---GAPCLLENVLAEMVISAVP---S-IEMVRFVNSGTEAC 105 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~---~~~~~~~~~l~~~l~~~~~---~-~~~v~~~~~g~~a~ 105 (411)
.+||+..+ .|--..++.+++++.++++... .| .+..++++.+++++.+.++ . .++|++|+|+++|+
T Consensus 27 ~~I~L~~G---~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al 103 (418)
T d2r5ea1 27 KPLNLGQG---FPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 103 (418)
T ss_dssp CCEECSSS---CCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCEEccCC---CCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhh
Confidence 45888877 4432257889999999987632 23 2346889999999998775 3 47899999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC-CCCHHHHHHHHHcCCCcE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENNKGEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~~~~ 184 (411)
..+++. ...+++.|++.+++|+.. .......|..++.++........ ...... ..+.+.+++... ..+
T Consensus 104 ~~~~~~--l~~~gd~vlv~~P~y~~~-~~~~~~~g~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~ 172 (418)
T d2r5ea1 104 YATIQG--HVDEGDEVIIIEPFFDCY-EPMVKAAGGIPRFIPLKPNKTGG-----TISSADWVLDNNELEALFN---EKT 172 (418)
T ss_dssp HHHHHH--HCCTTCEEEEEESCCTTH-HHHHHHTTCEEEEEECEESCCSS-----CEEGGGEECCHHHHHHHCC---TTE
T ss_pred hhhhhh--ccccccceeccccccchh-hHHHHHcCCeEEEEEeccccccc-----chhhhhhhhhHHHHhhhhh---ccc
Confidence 999975 345678899999998864 34444445444443332111110 000000 015666665543 466
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc--CccccccCCC---cchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYFGVT---PDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~--~~~~~~~~~~---~d~~~~sK~~~-~G~ 257 (411)
+++++.+.+|++|.+.+ .+.+++|.++|++|++++|.||+|..+ ..+. .......+.. ..+.|+||.++ +|+
T Consensus 173 ~~~~i~~p~NPtG~~~s-~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGl 251 (418)
T d2r5ea1 173 KMIIINTPHNPLGKVMD-RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 251 (418)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG
T ss_pred cceecCCcCcccccccc-HHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCc
Confidence 66666666666666554 555999999999999999999999877 3331 1111111211 22448999998 899
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh----c-CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK----E-PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
|+||+++++++++.+.. .....+++.+.+.+.++...+.... . ++.++++++..+..++.+.+...+.++..
T Consensus 252 RiG~~~~~~~~i~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 328 (418)
T d2r5ea1 252 KIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNP 328 (418)
T ss_dssp CCEEEESCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccccccccchhhhhhhh---cccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCcc
Confidence 99999999999887763 1122355566666666655554321 1 34444444444444444444444446665
Q ss_pred EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCCC-----------cceeeecCCCHHHHHHH
Q 015230 333 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-----------EAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~-----------~~~~~~~~~t~~~i~~~ 400 (411)
..+..|+++|+++....... .........+..++++.|.+ .||.+.|+.. +.+|++++.++++++++
T Consensus 329 ~~P~gg~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a 407 (418)
T d2r5ea1 329 TVPQGGYFMVADWSSLDSKV-DLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKA 407 (418)
T ss_dssp EECSBSSEEEEECGGGSTTC-CGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHH
T ss_pred cCCCceeEEEEEcccccccc-cchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHH
Confidence 66677889999986532211 11111222334567776654 5999999732 34899988899999999
Q ss_pred HHHHHHHHH
Q 015230 401 ITAAEKVLR 409 (411)
Q Consensus 401 i~~l~~~~~ 409 (411)
+++|++.+.
T Consensus 408 ~~rl~~~lg 416 (418)
T d2r5ea1 408 AEILRKWKG 416 (418)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999875
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=5.6e-30 Score=239.40 Aligned_cols=344 Identities=13% Similarity=0.031 Sum_probs=219.4
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.+|+.++++..+.. +...+ .++.+++++.++++.+. .|+ +..++++.+++++.+.++ .++++++|+|++++
T Consensus 27 ~~G~~vi~l~~G~P-~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~ 105 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDP-VKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 105 (395)
T ss_dssp HTTCCCEECCCCCG-GGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCCCC-CCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence 46889999988731 22356 67889999999998743 343 346788999999998775 57899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..++.. ....++.|++.+|+|+.. .......|..+..++.....++.. |++++++.+.. ...
T Consensus 106 ~~~~~~~--~~~~Gd~vlv~~P~y~~~-~~~~~~~g~~~v~v~~~~~~~~~~------------d~~~~~~~~~~--~~~ 168 (395)
T d1xi9a_ 106 LQLIFGA--LLDPGDEILVPGPSYPPY-TGLVKFYGGKPVEYRTIEEEDWQP------------DIDDIRKKITD--RTK 168 (395)
T ss_dssp HHHHHHH--HCCTTCEEEEEESCCHHH-HHHHHHTTCEEEEEEEEGGGTSEE------------CHHHHHHHCCT--TEE
T ss_pred hhhhhhh--hcCCCCEEEEcCCccccc-hhhhhhcCCEEEEEeccccccccc------------hHHHHHHhhcc--ccc
Confidence 9998874 344678899999999853 334444454433332221222111 78888877652 233
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc---ccccCCCcchhhhhhhcc-CCccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA---QEYFGVTPDLTTLGKIIG-GGLPV 259 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~---~~~~~~~~d~~~~sK~~~-~G~~~ 259 (411)
.+++++| +|++|.+.+ .+.+++|.++|++|++++|.||+|.++ ..+.... .........+.||||.++ +|+|+
T Consensus 169 ~v~l~~P-~NPTG~~~s-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRv 246 (395)
T d1xi9a_ 169 AIAVINP-NNPTGALYD-KKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL 246 (395)
T ss_dssp EEEEESS-CTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC
T ss_pred EEEecCC-CCCccchhh-HHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhc
Confidence 4455555 556665554 455999999999999999999999876 3332211 111111223458999999 79999
Q ss_pred cccccc--HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EE
Q 015230 260 GAYGGR--RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CG 334 (411)
Q Consensus 260 g~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 334 (411)
||++.. ...+..+..............+.+++.++..+++...+ ++.++.++++.+.+.+.|+++ +... ..
T Consensus 247 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~ 322 (395)
T d1xi9a_ 247 GYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----PGISTTK 322 (395)
T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----TTEECCC
T ss_pred EeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCceecC
Confidence 998542 22222221100011222445566777776666542211 334445555555565555543 4332 22
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
...|+++|+++..... .++.+.+.+.+.++||.+.|+. .+.+|++++.+++++++++++|++++
T Consensus 323 p~gg~~~~~~l~~~~~----------~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l 392 (395)
T d1xi9a_ 323 PQGAFYIFPKIEVGPW----------KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 392 (395)
T ss_dssp CCBSSEECCEECSCSC----------SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCeeEEEeEECCCCCC----------CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 3458889998854321 1122334445667799999873 34589999889999999999999998
Q ss_pred Hh
Q 015230 409 RQ 410 (411)
Q Consensus 409 ~~ 410 (411)
++
T Consensus 393 ~e 394 (395)
T d1xi9a_ 393 KE 394 (395)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=3.2e-28 Score=226.16 Aligned_cols=330 Identities=16% Similarity=0.163 Sum_probs=217.1
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
..|+.+||+..+ ++ ++ .++.+++++.+++..+. .|+ +..++++.+++++.+..+ .++++++|+|+++|
T Consensus 25 ~~G~~vI~l~~G---~p-~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~a 100 (375)
T d1o4sa_ 25 KKGEDVINLTAG---EP-DFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQA 100 (375)
T ss_dssp HTTCCCEECCCS---SC-SSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCc---CC-CCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHH
Confidence 458889999888 33 23 67889999999988743 232 447888899999887664 58899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.. ..+++.|++.+|+|...... ....+............+.. .|.+.++.... .++
T Consensus 101 l~~~~~~l--~~~gd~vlv~~P~y~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---~~~ 162 (375)
T d1o4sa_ 101 LFNAFMAL--LDPGDEVIVFSPVWVSYIPQ-IILAGGTVNVVETFMSKNFQ------------PSLEEVEGLLV---GKT 162 (375)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECCGGGTTC------------CCHHHHHHTCC---TTE
T ss_pred HHHHHHHH--hCCCCEEEEccCccccchhh-hhcccccccccccccccccc------------chhHHHHHhhc---cCc
Confidence 99988742 34567899999988854333 33344333332221111111 15666655433 345
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Cccc---cccCCCcchhhhhhhcc-CCcc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQ---EYFGVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~---~~~~~~~d~~~~sK~~~-~G~~ 258 (411)
+++++...+|++|.... .+.+++|.++|++|+++||.||+|..+ ..+. .... +..+...-+.|+||.++ +|+|
T Consensus 163 ~~~~l~nP~NPTG~~~s-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R 241 (375)
T d1o4sa_ 163 KAVLINSPNNPTGVVYR-REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWR 241 (375)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGC
T ss_pred cEEEEeCCCCCccCCCC-HHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccc
Confidence 55444444555665544 555999999999999999999999866 3322 2111 11222333568999999 8999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+||++++++.++.+... ....+.......+...... ++. ....+.++++.+.+.+.|++. ++......
T Consensus 242 ~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~l~~~----g~~~~~p~ 311 (375)
T d1o4sa_ 242 VGYLISSEKVATAVSKI---QSHTTSCINTVAQYAALKA---LEVDNSYMVQTFKERKNFVVERLKKM----GVKFVEPE 311 (375)
T ss_dssp CEEEECCHHHHHHHHHH---HHHHTCSCCHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHHHHHHHT----TCCCCCCS
T ss_pred cccccccccchhhhhhh---hccccccccccchhhhhhh---cccchhhhHHHHHHHHHHHHHHHHhc----CceEecCC
Confidence 99999999888777531 1222333444444443332 222 344455666666666666654 44333345
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.|+++|+++... +.+.+.+.+.++||.+.||. .+.+|+++..+++++++++++|+++++
T Consensus 312 gg~f~~~~~~~~--------------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 312 GAFYLFFKVRGD--------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp BSSEEEEECSSC--------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEECCCC--------------HHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 588899988431 12334445667799999974 345899988899999999999999885
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=6.9e-28 Score=222.77 Aligned_cols=336 Identities=13% Similarity=0.047 Sum_probs=212.0
Q ss_pred EeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC--CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHH
Q 015230 39 IDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG--APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 39 ~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~--~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~ 111 (411)
|+|..+ .+ .+ .+|.+++|+.+.++.+. .|. ...++++++++++.+.++ .+++|++|+|+++++..++..
T Consensus 2 ~~~~~~---~~-df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~ 77 (361)
T d1d2fa_ 2 LPFTIS---DM-DFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 77 (361)
T ss_dssp EECCSS---SC-SSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred cCcCCC---CC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhh
Confidence 455554 22 35 78999999999988742 222 115678899999998876 578999999999999998874
Q ss_pred HHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 112 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
....++.|++.+++|... .......|..+..++.. ...+.. .|++.+++.+.+ .+++++++.
T Consensus 78 --l~~~gd~Vlv~~P~y~~~-~~~~~~~g~~~~~v~~~~~~~~~~------------~d~~~~~~~~~~--~~~~~i~l~ 140 (361)
T d1d2fa_ 78 --WSETGEGVVIHTPAYDAF-YKAIEGNQRTVMPVALEKQADGWF------------CDMGKLEAVLAK--PECKIMLLC 140 (361)
T ss_dssp --SSCTTCEEEEEESCCHHH-HHHHHHTTCEEEEEECEECSSSEE------------CCHHHHHHHHTS--TTEEEEEEE
T ss_pred --ccccccccccccccccch-hHHHHhhcceEEeecccccccccc------------cccccchhhccc--CCceeEEec
Confidence 234567899999998764 34444445443332221 111110 188999988864 366666655
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccC--CCcchhhhhhhcc-CCccccccccc
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG--VTPDLTTLGKIIG-GGLPVGAYGGR 265 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~--~~~d~~~~sK~~~-~G~~~g~~~~~ 265 (411)
..+|++|...+.++ +++|.++|+++|++||+||+|.++ ..+.. ....... ....+.++||.++ +|+|+||+..+
T Consensus 141 ~p~NPTG~~~s~~~-~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~ 219 (361)
T d1d2fa_ 141 SPQNPTGKVWTCDE-LEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIE 219 (361)
T ss_dssp SSCTTTCCCCCTTH-HHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEEC
T ss_pred ccccccccccchhh-hhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecc
Confidence 55666665554333 999999999999999999999987 43321 1111111 1122457899998 79999998543
Q ss_pred -HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEE
Q 015230 266 -RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 342 (411)
Q Consensus 266 -~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~ 342 (411)
+...+...... .......+.+..+++++..+.+.... ++++..++++.+.+.+.+.+... .........|+++|
T Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~p~gg~~~~ 296 (361)
T d1d2fa_ 220 NSSSRDAYLSAL-KGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFP--ELNWQIPQSTYLAW 296 (361)
T ss_dssp SHHHHHHHHHHH-HTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCS--SCCCCCCSBCSEEE
T ss_pred hhHHHHHHhhhc-ccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcc--cccccccCceeEEE
Confidence 33322221100 00111233445555555544443222 34555566666666665555432 22223344578888
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+++.... .+..++++.|.++ ||.+.||. .+.+|+++..+++++++++++|.++++++
T Consensus 297 ~~l~~~~------------~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 297 LDLRPLN------------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp EECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEccCCC------------CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 8874321 1236777777655 99998863 23489998889999999999999999864
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.96 E-value=5.5e-28 Score=226.81 Aligned_cols=340 Identities=13% Similarity=0.117 Sum_probs=215.0
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTE 103 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~ 103 (411)
++..++||..++. ++-.+..+.+++++.+.+... ..| .+..++++.+++++.+.++ .+++|++|+|+++
T Consensus 27 ~~~~~i~l~~G~P-~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~ 105 (403)
T d1wsta1 27 ETSDVISLAGGLP-APETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQ 105 (403)
T ss_dssp TSSSCEECCCCCC-CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHH
T ss_pred CCCCcEECCCCCC-CccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchH
Confidence 4556889887742 222234556777777766541 123 3467889999999998765 5899999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH----HHHHHHHHc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV----SALENLFEN 179 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~l~~~~~~ 179 (411)
++..+++.. ..+++.|++.+++|+...... ...|.....++.... ..+. +..+....+
T Consensus 106 al~~~~~~l--~~~gd~v~~~~P~y~~~~~~~-~~~g~~~~~v~~~~~---------------~~~~~~~~~~~~~~~~~ 167 (403)
T d1wsta1 106 ALDLIGRVF--LNPGDPIVVEAPTYLAAIQAF-KYYDPEFISIPLDDK---------------GMRVDLLEEKLEELRKQ 167 (403)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCEEEEEEEETT---------------EECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--hhcCCccccCCCcchhhhHHH-hhccccceeEeeccc---------------CCccccccccchhhhhc
Confidence 999998852 346788999999998644333 333332222111100 0022 222233333
Q ss_pred CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc----cccccCCCcchhhhhhhcc
Q 015230 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQEYFGVTPDLTTLGKIIG 254 (411)
Q Consensus 180 ~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~----~~~~~~~~~d~~~~sK~~~ 254 (411)
......++++...+|++|...+ .+.+++|.++|++|+++||+||+|.++ ..+... ..+..+....+.|+||.++
T Consensus 168 ~~~~~~~~~~~~p~NPtG~~~s-~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 246 (403)
T d1wsta1 168 GKRVKIVYTVSTFQNPAGVTMS-VDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA 246 (403)
T ss_dssp TCCCCEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC
T ss_pred cccccccccccccCCCCCccCC-HHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec
Confidence 3334445555555555665554 455999999999999999999999877 444221 1122233344569999998
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
+|+|+||+++++++++.+.. .........+...+.+..+.+..... +++++.++++.+.+.+.|++.... .+
T Consensus 247 ~G~RiG~~i~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~ 322 (403)
T d1wsta1 247 PGFRIGWVAAHPHLIRKMEI---AKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE-GV 322 (403)
T ss_dssp GGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TC
T ss_pred CcccccccccchHHHHHHHH---HHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccC-Ce
Confidence 89999999999998887652 11222345555555555444432221 333444445555555555543211 22
Q ss_pred ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecC-CCHHHHHHHH
Q 015230 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLA-HSSDDIQHTI 401 (411)
Q Consensus 331 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~-~t~~~i~~~i 401 (411)
.......|+++|+++... .+.+.+.+.|.++||.+.|+. .+.+|++++ .+++++++++
T Consensus 323 ~~~~p~gg~~~~~~~~~~-------------~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al 389 (403)
T d1wsta1 323 EWTKPEGGMFVRVTLPEG-------------IDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGV 389 (403)
T ss_dssp EECCCSBSSEEEEECCTT-------------CCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHH
T ss_pred EEeCCCceeEEEEECCCC-------------CCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHH
Confidence 333345688999988542 122568889999999998863 235899875 6899999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
++|++++++
T Consensus 390 ~rl~~~l~~ 398 (403)
T d1wsta1 390 RRLAETIKE 398 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.96 E-value=5.1e-29 Score=229.87 Aligned_cols=323 Identities=17% Similarity=0.140 Sum_probs=209.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
....++||++|. +++| .+|.+++++.+.+.....| ++.-..+|.+.+++.++ ..++|++++|+++++..++.
T Consensus 20 ~p~~~idls~~~--np~~-~p~~~~~a~~~~~~~~~~Y--p~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~-- 92 (355)
T d1lc5a_ 20 SPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS-- 92 (355)
T ss_dssp CGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH--
T ss_pred ChhheEEccCCC--CCCC-CCHHHHHHHHHHHHHhccC--CCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHh--
Confidence 344689999875 6777 5788999999988775443 32223456666666677 67899999999998887665
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
.. .++.+++..+.|+. +.......+.++..++.....++.. + +.+++.+. .+++++++++.
T Consensus 93 -~~-~~~~~~v~~p~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~------------~-~~~~~~~~---~~~~~v~l~nP 153 (355)
T d1lc5a_ 93 -GL-KPRRAMIVTPGFAE-YGRALAQSGCEIRRWSLREADGWQL------------T-DAILEALT---PDLDCLFLCTP 153 (355)
T ss_dssp -HH-CCSEEEEEESCCTH-HHHHHHHTTCEEEEEECCGGGTTCC------------C-TTHHHHCC---TTCCEEEEESS
T ss_pred -hh-ccccccccCCccce-eccccccccccceeeeeeccCCccc------------e-eeeeeccc---cccceeeeecc
Confidence 23 34555666777764 3444445555555544433333211 2 22333333 34555555544
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc--ccccCCCcchhhhhhhcc-CCcccccccccHH-
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA--QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD- 267 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~--~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~- 267 (411)
+|++|... +.+.+++|.++|++|++++|+||+|.+| ..+.... ....+....+.|+||+++ +|+|+||++++.+
T Consensus 154 ~NPtG~~~-~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~ 232 (355)
T d1lc5a_ 154 NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA 232 (355)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred cCcccccc-hhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchh
Confidence 66667654 4566999999999999999999999877 4332211 111112233558999999 8999999988755
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
+.+.++. ...++..+.+++.++.++++.... .+.++++++..+++.+.|.++ +........|+++|+.+.
T Consensus 233 ~~~~~~~-----~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~p~~~~f~~~~~~ 303 (355)
T d1lc5a_ 233 AMARMRR-----QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL----PLLTVYPGRANYLLLRCE 303 (355)
T ss_dssp HHHHHHH-----HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS----TTEEECCCSSSEEEEEES
T ss_pred hhHHHHh-----hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc----CCcEECCCCCEEEEEECC
Confidence 4444442 223567788888887777642211 344555666666666666554 433333455788898875
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
..+ .++++.|+++||+++++. .+.+|+++. +++++++++++|++++
T Consensus 304 ~~~---------------~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 304 RED---------------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp CTT---------------CCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred CCH---------------HHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 321 467888999999998763 235788764 8899999999999864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=9.1e-28 Score=222.54 Aligned_cols=325 Identities=18% Similarity=0.157 Sum_probs=209.8
Q ss_pred EEeccCCccccccCC-CcHHHHHHHHHHHHcCCCCCC---CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 38 YIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
.||+..+ +| ++ .+|.+++|+.++++....|+. ..++++.++++ ++ .+++|++|+|+++++..+++.
T Consensus 27 ~I~ls~g---~p-~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~----~~~~~~~Iiit~G~~~al~~~~~~- 97 (368)
T d1v2da_ 27 AVNLGQG---FP-SNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEE----FAVEPESVVVTSGATEALYVLLQS- 97 (368)
T ss_dssp CEECCCC---SC-SSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHH----HTSCGGGEEEESSHHHHHHHHHHH-
T ss_pred CEEecCC---CC-CCCCCHHHHHHHHHHhhcccCCCCCcCCHHHHHHHHhh----cccCCcceeeccchHHHHHHHhhc-
Confidence 5888777 44 34 678999999999887434432 23455555554 45 688999999999999999874
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
...+++.|++.+++|+.. .......|..+...+.+.... ... -|.+.+++.+++ ....+++++|
T Consensus 98 -l~~~~d~v~~~~p~~~~~-~~~~~~~g~~~~~~~~~~~~~--------~~~---~d~~~l~~~~~~--~~~~i~~~~p- 161 (368)
T d1v2da_ 98 -LVGPGDEVVVLEPFFDVY-LPDAFLAGAKARLVRLDLTPE--------GFR---LDLSALEKALTP--RTRALLLNTP- 161 (368)
T ss_dssp -HCCTTCEEEEEESCCTTH-HHHHHHTTCEEEEEECEEETT--------EEE---CCHHHHHTTCCT--TEEEEEEESS-
T ss_pred -cccccccccccCCcchhh-hhHHHhcCCccceeccccccc--------ccc---CCHHHHHHhhcc--CceEEEEcCC-
Confidence 244567888888888754 344444444333322211000 000 188888887763 2334455555
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc--cCCCcchhhhhhhcc-CCcccccccccHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY--FGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 268 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~--~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~ 268 (411)
+|++|.+.+ .+.+++|.++|++|++++|+||+|..+ .......... ......+.++||.++ +|+|+||++.++++
T Consensus 162 ~NPtG~~~~-~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~ 240 (368)
T d1v2da_ 162 MNPTGLVFG-ERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (368)
T ss_dssp CTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCcccccCC-HHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccc
Confidence 556665554 445999999999999999999999754 3222111111 112223568999888 69999999999888
Q ss_pred HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecC
Q 015230 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348 (411)
Q Consensus 269 ~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 348 (411)
++.+.. .......+.+.+.+.++.+++......+..+++++..+..++.+.+...++++.......|+++|+++...
T Consensus 241 ~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~ 317 (368)
T d1v2da_ 241 MPRLAG---MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW 317 (368)
T ss_dssp HHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTC
T ss_pred cchhhh---hhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCcc
Confidence 777652 22334666777777777777765444444444444333333333333334465554455678899887421
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
...+.|.++||.+.|+. .+.+|++++.+++++++++++|++++
T Consensus 318 -----------------~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 318 -----------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp -----------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred -----------------HHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 12356778999998862 23589998889999999999999874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.5e-27 Score=220.20 Aligned_cols=357 Identities=14% Similarity=0.093 Sum_probs=220.9
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC---CCC---CCCHHHHHHHHHHHhhCC-C---CCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT---SFG---APCLLENVLAEMVISAVP-S---IEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~---~~~---~~~~~~~~l~~~l~~~~~-~---~~~v~~~~~g~ 102 (411)
.++.+||+..+ .| .+ .++.+++++.+++.+.. .|+ +..++++.+++++.+.++ . .++|++|+|++
T Consensus 23 ~~~dvI~l~~G---~p-~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~ 98 (418)
T d1w7la_ 23 SEHDVVNLGQG---FP-DFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGY 98 (418)
T ss_dssp HTSCCEECCCC---SC-SSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHH
T ss_pred CCCCCEECCCC---CC-CCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcH
Confidence 45678998888 44 34 57789999999887632 232 346788999999998775 3 25799999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCC-CCHHHHHHHHHcC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF-NDVSALENLFENN 180 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~ 180 (411)
+|+..+++. ...+++.|++.++.|+.. .......|...+..+. +....... ......+ -|.+++.....
T Consensus 99 ~al~~~~~~--l~~~g~~vlv~~p~~~~y-~~~~~~~g~~~v~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~-- 169 (418)
T d1w7la_ 99 GALFTAFQA--LVDEGDEVIIIEPFFDCY-EPMTMMAGGRPVFVSLKPGPIQNGE----LGSSSNWQLDPMELAGKFT-- 169 (418)
T ss_dssp HHHHHHHHH--HCCTTCEEEEEESCCTTH-HHHHHHTTCEEEEEECEECC---CC----SEEGGGEECCHHHHHHHCC--
T ss_pred HHHHHHHHh--hccCCceeeccccccchh-HHHHHHcCCEeeccccccccccccc----cccccCcccchhhhhcccc--
Confidence 999999875 345678888888888854 4444444443332221 11110000 0000000 14444443332
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-c-cccccCC---Ccchhhhhhhcc
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-G-AQEYFGV---TPDLTTLGKIIG 254 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~-~~~~~~~---~~d~~~~sK~~~ 254 (411)
..++++++...+|++|.... ++.+++|.++|++|++++|+||+|.++ ..+.. . .....+. ..-+.|+||.++
T Consensus 170 -~~~~~i~~~~p~NPtG~~~s-~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 247 (418)
T d1w7la_ 170 -SRTKALVLNTPNNPLGKVFS-REELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS 247 (418)
T ss_dssp -TTEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred -ccccceeccCcCCccccccc-HHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCcccc
Confidence 35555555444555555443 555999999999999999999999987 44421 1 1111122 122458999998
Q ss_pred -CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 255 -GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 255 -~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+|+|+||+++++++++.+.. .....+++.+.+++.++.+++..... .+.+.+.++..+..++.+.+...+.
T Consensus 248 ~pG~RvG~~v~~~~~~~~l~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d1w7la_ 248 ATGWKVGWVLGPDHIMKHLRT---VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV 324 (418)
T ss_dssp CGGGCCEEEECCHHHHHHHHH---HHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcccccccchhhhhhhcc---ccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc
Confidence 79999999999998887763 22334566677777777777653221 3444444444444444444444444
Q ss_pred CCceEEeeecceEEEEEecCCCCCcch-hcccchHHHHHHHHH-HHHcCeEeccCC-----------CcceeeecCCCHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFED-AKKSETTKFARFYRG-MLEEGVYFAPSQ-----------FEAGFTSLAHSSD 395 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~Gi~v~~~~-----------~~~~~~~~~~t~~ 395 (411)
++....+..|+++|+++.....+.... ...+...+ .++++. |+++||.+.|+. .+++|++++.+++
T Consensus 325 g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~ 403 (418)
T d1w7la_ 325 GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYD-RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEA 403 (418)
T ss_dssp TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHH-HHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHH
T ss_pred CCcccCCCceeEEEEECcccccccchhccccccccH-HHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHH
Confidence 665555667889999885311000000 00112222 445555 566699998873 2358999888999
Q ss_pred HHHHHHHHHHHHHH
Q 015230 396 DIQHTITAAEKVLR 409 (411)
Q Consensus 396 ~i~~~i~~l~~~~~ 409 (411)
++++++++|++...
T Consensus 404 ~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 404 TLQAMDEKLRKWKV 417 (418)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998653
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5e-27 Score=218.41 Aligned_cols=331 Identities=15% Similarity=0.115 Sum_probs=220.0
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
.++.+||+..+ .| .+ .++.+++++.++++++. .|+ +..++++.+++++.+.++ .++ +|++|+|++++
T Consensus 24 ~~~~~i~l~~G---~P-d~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~a 99 (382)
T d1u08a_ 24 QQHQAINLSQG---FP-DFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA 99 (382)
T ss_dssp HHTTCEECCCS---SC-SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHH
T ss_pred ccCCCEEccCC---CC-CCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHH
Confidence 44567899988 44 34 67889999999998843 232 346889999999998775 344 59999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++. ...+++.|++.+++|+... ......|..............+ |.+++++.+. +++
T Consensus 100 l~~~~~~--l~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~~~---~~~ 160 (382)
T d1u08a_ 100 LYAAITA--LVRNGDEVICFDPSYDSYA-PAIALSGGIVKRMALQPPHFRV-------------DWQEFAALLS---ERT 160 (382)
T ss_dssp HHHHHHH--HCCTTCEEEEEESCCTTHH-HHHHHTTCEEEEEECCTTTCCC-------------CHHHHHHHCC---TTE
T ss_pred HHHHHhh--cccccceEEEecccccchh-hhhhhccccceecccccccccC-------------CHHHHhhhhc---cCc
Confidence 9999974 3456778888889888643 3444444433333222222221 7888877665 355
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc----cccCCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ----EYFGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~----~~~~~~~d~~~~sK~~~-~G~ 257 (411)
+++++.+.+|++|.+.. .+.+++|.++|++++++++.||+|..+ ..+.. ... ...+...-+.++||.++ +|+
T Consensus 161 ~~i~l~~P~NPtG~v~~-~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~ 239 (382)
T d1u08a_ 161 RLVILNTPHNPSATVWQ-QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW 239 (382)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG
T ss_pred cEEEECCCCcccccccc-cccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcc
Confidence 55555544555565544 444999999999999999999999754 22211 110 00111222458999998 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.. .....+++.+.+.+.++.++++...+ +++++.++++.+.+.+ .....++.....
T Consensus 240 RiG~~v~~~~~~~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~~p 312 (382)
T d1u08a_ 240 KVGYCVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVN----ALNESRLEILPC 312 (382)
T ss_dssp CCEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHH----HTTSSSCEECCC
T ss_pred cchhhhccchhHHHHHh---hhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhh----hhccCCcEEecC
Confidence 99999999999887763 22334677788888888888764322 3444444444444433 333334544445
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCC--------cceeeecCCCHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQF--------EAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~--------~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
..|+++|+++..... .+..++++.| .++||.+.|+.. +.+|++++.+++++++++++|++
T Consensus 313 ~gg~~~~~~~~~~~~-----------~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 313 EGTYFLLVDYSAVST-----------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp CBSSEEEEECTTTCC-----------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred CceEEEEEecCCCCC-----------CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 668899998854221 1124566665 567999998732 24799988899999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2.1e-27 Score=223.95 Aligned_cols=341 Identities=12% Similarity=0.127 Sum_probs=221.2
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCC---CCCCHHHHHHHHHHHhhCC----CCCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSF---GAPCLLENVLAEMVISAVP----SIEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~---~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~ 102 (411)
.++.+|||..+.. ++--+..+.+.+++.+.++.. ..| .+..++++.+++++.+.++ .+++|++|+|++
T Consensus 36 ~~~~~I~l~~G~P-d~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCC-CCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 5677899988732 111224566677776666542 123 3457789999999998764 478999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN--- 179 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--- 179 (411)
+|+..++.. ...+++.|++.+++|... .......|..+..++.. ..+. |++.++..+..
T Consensus 115 ~al~~~~~~--~~~~Gd~Vlv~~P~y~~~-~~~~~~~g~~~~~~~~~-~~~~--------------~~~~l~~~~~~~~~ 176 (420)
T d1vp4a_ 115 QALDLIGKL--FLDDESYCVLDDPAYLGA-INAFRQYLANFVVVPLE-DDGM--------------DLNVLERKLSEFDK 176 (420)
T ss_dssp HHHHHHHHH--HCCTTCEEEEEESCCHHH-HHHHHTTTCEEEEEEEE-TTEE--------------CHHHHHHHHHHHHH
T ss_pred hhHHHHHHh--hhccccccccccccccch-hHHHHHHhhhccccccc-cccc--------------ccchhhhhhhhhHH
Confidence 999998874 345678899999988853 33333444433332211 1111 56666554432
Q ss_pred --CCCcEE-EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc----ccccCCCcchhhhhh
Q 015230 180 --NKGEIA-AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA----QEYFGVTPDLTTLGK 251 (411)
Q Consensus 180 --~~~~~~-~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~----~~~~~~~~d~~~~sK 251 (411)
...++. ++++.+.+|++|... +.+.+++|.++|++|++++|+||+|.++ ..+.... .+..+...-+.++||
T Consensus 177 ~~~~~~~~~~~~~~~p~NPtG~~~-s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk 255 (420)
T d1vp4a_ 177 NGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK 255 (420)
T ss_dssp TTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTT
T ss_pred HhhccccceeeEecCCCCccchhh-hhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccc
Confidence 112344 444544455566554 4555999999999999999999999877 4442211 111112222346788
Q ss_pred hccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 252 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 252 ~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
.+.+|+|+||+++++++++.+.+. ........+.+.++++...++.... ++.++.++++.+.+.+.|++....
T Consensus 256 ~~~~G~RiG~~~~~~~~i~~l~~~---~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 332 (420)
T d1vp4a_ 256 VLAPGLRIGMVAGSKEFIRKIVQA---KQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD 332 (420)
T ss_dssp TTCGGGCEEEEECCHHHHHHHHHH---HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccccccccccchhhhhhhhh---hhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhcc
Confidence 887899999999999998887632 1222345566666666555543211 345566777777788888777555
Q ss_pred cCCc-eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecC-CCHHHH
Q 015230 328 AGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLA-HSSDDI 397 (411)
Q Consensus 328 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~-~t~~~i 397 (411)
.+.. ......|+++|+++.+. .+..++.+.|.++||.+.||. .+.+|++++ .+++++
T Consensus 333 ~~g~~~~~p~gg~f~~~~~~~~-------------~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l 399 (420)
T d1vp4a_ 333 IPGVKWVKSEGGLFIWLTLPEG-------------FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKI 399 (420)
T ss_dssp STTCEECCCSBSSEEEEECCTT-------------CCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHH
T ss_pred CCCcEEecCCceEEEEEECCCC-------------CCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHH
Confidence 4433 23344578999988532 112457788999999998873 235799875 588999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 400 ~~a~~rL~~~l~~ 412 (420)
T d1vp4a_ 400 VEGIKRLREVVLE 412 (420)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2.6e-27 Score=221.07 Aligned_cols=332 Identities=15% Similarity=0.098 Sum_probs=212.1
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
..|+.++|+..+ .| .+ .++.+++++.++......|+ +..++++.+++++.+..+ .+++|++|+|+++++
T Consensus 25 ~~g~~vi~l~~G---~p-~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l 100 (389)
T d2gb3a1 25 KRGVRIHHLNIG---QP-DLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 100 (389)
T ss_dssp HTTCEEEECSSC---CC-CSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred HcCCCEEECCCC---CC-CCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccc
Confidence 568899999887 44 24 57778888877655433343 346788999999998875 588999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++. ...+++.|++.++.|+.. .......|......+........ +.+.+.. ...++++
T Consensus 101 ~~~~~~--l~~~gd~V~i~~P~y~~~-~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~ 161 (389)
T d2gb3a1 101 LFSFAV--IANPGDEILVLEPFYANY-NAFAKIAGVKLIPVTRRMEEGFA-------------IPQNLES---FINERTK 161 (389)
T ss_dssp HHHHHH--HCCTTCEEEEEESCCTHH-HHHHHHHTCEEEEEECCGGGTSC-------------CCTTGGG---GCCTTEE
T ss_pred cccccc--cccCCCeEEEeCCCCccc-cccccccCccccccccccccccc-------------hhhhhhh---hcccCcc
Confidence 998874 344667899999988754 33344444433332221111111 1122222 2234566
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC--CCcchhhhhhhcc-CCccccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--VTPDLTTLGKIIG-GGLPVGA 261 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~--~~~d~~~~sK~~~-~G~~~g~ 261 (411)
++++...+|++|... +.+.+++|.++|++|+++||.||+|..+ ..+......... ...-+.++||.++ +|+|+||
T Consensus 162 ~~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~ 240 (389)
T d2gb3a1 162 GIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGC 240 (389)
T ss_dssp EEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred EEEeCCCCccccccc-hHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceee
Confidence 655554455566555 4556999999999999999999999877 444322111111 1112448899988 6999999
Q ss_pred ccccHH-HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeee
Q 015230 262 YGGRRD-IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYI 337 (411)
Q Consensus 262 ~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 337 (411)
++++.+ +.+.+.. .....+..+.+.+.++...+...+. +++++.++++.+.+.+.|+++ +... .....
T Consensus 241 ~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~p~~ 312 (389)
T d2gb3a1 241 LITRNEELISHAMK----LAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH----GLKRFTKPSG 312 (389)
T ss_dssp EECSCHHHHHHHHH----HHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCCSB
T ss_pred eeccchhHHHHHhh----hhhccccccccccccccccccccchhcccccccccccchhhhhhhhhh----ccccccCCCc
Confidence 987554 4443331 1233556666776666655532211 344555666666666666554 5432 23456
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc------CeEeccCC---------CcceeeecCCCHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHTIT 402 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~v~~~~---------~~~~~~~~~~t~~~i~~~i~ 402 (411)
|+++|++++.. +..++++.|.++ ||.+.|+. .+.+|++++.++++++++++
T Consensus 313 g~~~~~~lp~~--------------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~ 378 (389)
T d2gb3a1 313 AFYITAELPVE--------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAID 378 (389)
T ss_dssp SSEEEEECSSS--------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeCCCC--------------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHH
Confidence 88999988421 125667766543 77777652 23589998899999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|.+++++
T Consensus 379 ~L~~~lk~ 386 (389)
T d2gb3a1 379 VLMEGLKM 386 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=3.8e-27 Score=221.56 Aligned_cols=344 Identities=12% Similarity=0.029 Sum_probs=208.8
Q ss_pred cCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCCC--C---CCCCHHHHHHHHHHHhhCC---------CCCEEEE
Q 015230 33 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTS--F---GAPCLLENVLAEMVISAVP---------SIEMVRF 97 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~~--~---~~~~~~~~~l~~~l~~~~~---------~~~~v~~ 97 (411)
..++.+||+..+....+... ..+.+++++.+.++.... | .+..++++++++++.+.+. .+++|++
T Consensus 27 ~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~i 106 (412)
T d1bw0a_ 27 PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL 106 (412)
T ss_dssp CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE
T ss_pred CCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEE
Confidence 56678899988732111222 456778888887776322 3 2356789999999988641 4679999
Q ss_pred eCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 98 VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 98 ~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
|+|+++|+..+++. ...+++.|++.+|+|+.. .......|..+..++.....++. .+++++++..
T Consensus 107 t~G~~~al~~~~~~--l~~~Gd~Vlv~~P~y~~~-~~~~~~~G~~~~~v~~~~~~~~~------------~~~~~l~~~~ 171 (412)
T d1bw0a_ 107 CSGGSHGILMAITA--ICDAGDYALVPQPGFPHY-ETVCKAYGIGMHFYNCRPENDWE------------ADLDEIRRLK 171 (412)
T ss_dssp ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHH-HHHHHHTTCEEEEEEEEGGGTTE------------ECHHHHHHHC
T ss_pred ecccccchhhhhhh--hhccccceeeeeccchhh-hhhhhccCccccccccccccccc------------hhhHHHHhhh
Confidence 99999999999874 345678899999999854 44445556555544332222221 1778877765
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc-cc---cCCCc---chhh
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EY---FGVTP---DLTT 248 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~-~~---~~~~~---d~~~ 248 (411)
. ..+++++++..+|++|.+. +.+.+++|.++|++|+++||+||+|.++ ..+.. ... .. ..... -+.+
T Consensus 172 ~---~~~~~~~l~np~NPtG~~~-~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 247 (412)
T d1bw0a_ 172 D---DKTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGG 247 (412)
T ss_dssp C---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEE
T ss_pred h---ccccccccccccccccccc-hhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccc
Confidence 4 3455544444444555544 3555999999999999999999999987 44321 111 01 11111 1237
Q ss_pred hhhhcc-CCcccccccccH------HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-Hhc--CChHHHHHHHHHHHH
Q 015230 249 LGKIIG-GGLPVGAYGGRR------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELT 318 (411)
Q Consensus 249 ~sK~~~-~G~~~g~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-~~~--~~~~~~~~~~~~~~~ 318 (411)
+||.++ +|+|+||+++++ ..+..... ....+.+.+...++.+.+.+.. .++ ++++++++++.+++.
T Consensus 248 ~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 323 (412)
T d1bw0a_ 248 TAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR----VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLY 323 (412)
T ss_dssp STTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH----HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCccCCCCcccccccchhhcchhhhhhhcc----ccccccCCchhhhhhcccccccccccccccccchhHHHHHHHH
Confidence 899999 699999997753 22222211 1111233344444444333221 100 223333333444444
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC----CcceeeecCCC
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHS 393 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~~~~~~~~t 393 (411)
+.|.+. .++.......|+++|+.+....... ..+..++++.|. +.||.+.||. .+++|++++.+
T Consensus 324 ~~l~~~---~g~~~~~p~gg~~l~~~~~~~~~~~--------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~ 392 (412)
T d1bw0a_ 324 NHIGEC---IGLAPTMPRGAMYLMSRIDLEKYRD--------IKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRP 392 (412)
T ss_dssp HHHTTS---TTEEECCCCBTTEEEEEECGGGBSS--------CCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSC
T ss_pred HHHHHh---cCceecCCCCceEEEEeCChhhcCC--------CCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCC
Confidence 433322 2333333456788888875321111 111245666665 4599999973 34689999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015230 394 SDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~~ 410 (411)
++++++++++|++++++
T Consensus 393 ~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 393 VEVYREAVERIKAFCQR 409 (412)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998864
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.95 E-value=4.5e-26 Score=214.95 Aligned_cols=309 Identities=12% Similarity=0.068 Sum_probs=191.9
Q ss_pred CCCCCHHHHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcc
Q 015230 71 FGAPCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 145 (411)
Q Consensus 71 ~~~~~~~~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~ 145 (411)
..+..++++++++++.+.++ .+++|++|+|+++++..++.. ...+++.|++..++|+..........|..+..
T Consensus 82 ~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~--l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~ 159 (428)
T d1iaya_ 82 YHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFC--LADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHH--HCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHH--hCCCCCEEEEccCCchHHHHHHHHhcCCeEEE
Confidence 34567899999999998874 478999999999999999874 24466788888888876443333334544444
Q ss_pred cCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 146 LGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
++.....++.. |.++++..++. ...+++++++...+|++|.... .+.+++|.++|++|+++||+
T Consensus 160 v~~~~~~~~~~------------d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s-~~~~~~i~~~a~~~~~~vI~ 226 (428)
T d1iaya_ 160 IHCESSNNFKI------------TSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLD-KDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp ECCCTTTTTCC------------CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHTTTCEEEE
T ss_pred eeccccccccc------------ccccccchhhhhhccCCCceEEEEccCCCccccccc-ccccchhheeeccCcEEEEe
Confidence 44333333321 67777655432 3345555554444555565544 44499999999999999999
Q ss_pred ecccccc-ccccCcc--ccccC------CCc----chhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCC
Q 015230 223 DEVMTGF-RLAYGGA--QEYFG------VTP----DLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGN 287 (411)
Q Consensus 223 De~~~g~-~~g~~~~--~~~~~------~~~----d~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~ 287 (411)
||+|.++ ..+..+. ....+ ..+ -+.+|||.++ +|+|+||+++ ++.+.+.+.. .......+
T Consensus 227 De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~-----~~~~~~~~ 301 (428)
T d1iaya_ 227 DEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVS 301 (428)
T ss_dssp ECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCC
T ss_pred cccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhh-----hhcccccc
Confidence 9999977 4432111 11000 111 2458999998 7999999976 5666665542 11112223
Q ss_pred HHHHHHHHHHHH---HHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchH
Q 015230 288 PLAMTAGIHTLK---RLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 362 (411)
Q Consensus 288 ~~~~a~~~~~l~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 362 (411)
...+.++.+.+. .+++ ++.++.++++.+.+.+.|+. .++.......|+++|+++...... ...+
T Consensus 302 ~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~----~gi~~~~p~gg~f~w~~l~~~~~~-------~~~~ 370 (428)
T d1iaya_ 302 TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV----VGIKCLKNNAGLFCWMDLRPLLRE-------STFD 370 (428)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCBCCCSSSSEEEEECGGGCSS-------SSHH
T ss_pred cccccchhhhhhhhccccccccccccccchhHHHHHHHHHh----CCCEEecCCcceEEEEECcccccc-------CCCC
Confidence 333333333221 1111 33444455555555555543 354444455688999998643211 1223
Q ss_pred HHHHHHHHHHH-cCeEeccCC------CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 363 KFARFYRGMLE-EGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 363 ~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
...++++.|.+ .||.+.||. .+.+|++++ .+++++++++++|++++..
T Consensus 371 ~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 371 SEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 34566776665 599998863 345899876 4777899999999999864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.95 E-value=4.5e-26 Score=215.19 Aligned_cols=309 Identities=13% Similarity=0.105 Sum_probs=191.4
Q ss_pred CCCCHHHHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCccc
Q 015230 72 GAPCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 146 (411)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~ 146 (411)
.+..++++++++++.+.++ .+++|++|+|+++++..+++.. ..+++.|++..++|++.........|..+..+
T Consensus 84 ~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l--~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v 161 (431)
T d1m7ya_ 84 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPI 161 (431)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCEEEEE
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHHhcCceeccc
Confidence 3457899999999998864 4689999999999999999842 34668899999999865444433344433333
Q ss_pred CCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 147 GLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
+.....++.. |.+.+++.+++ ...+++++++...+|++|...+ .+.+++|.++|++|+++||+|
T Consensus 162 ~~~~~~~~~l------------~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s-~~~l~~i~~~a~~~~~~vI~D 228 (431)
T d1m7ya_ 162 HCTSSNGFQI------------TETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT-RNELYLLLSFVEDKGIHLISD 228 (431)
T ss_dssp ECCGGGTSCC------------CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEE
T ss_pred cccchhcccc------------cHHHhhhhhhhhhhccCcceEEEecCcccccccccc-ccccccccccccccCcceeec
Confidence 3222222211 77888777753 2335555555444555565544 455999999999999999999
Q ss_pred cccccc-ccccCcc--cccc---C---------CCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCC
Q 015230 224 EVMTGF-RLAYGGA--QEYF---G---------VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 287 (411)
Q Consensus 224 e~~~g~-~~g~~~~--~~~~---~---------~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~ 287 (411)
|+|..+ ..+..+. .... . ...-+.++||.++ +|+|+||++++++++..... . .......+
T Consensus 229 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~---~-~~~~~~~~ 304 (431)
T d1m7ya_ 229 EIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---K-MSSFGLVS 304 (431)
T ss_dssp CTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH---H-HGGGSCCC
T ss_pred ccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHH---H-Hhcccccc
Confidence 999877 4332111 1000 0 0111348999999 79999999887776544321 1 11122333
Q ss_pred HHHHHHHHHHHH---HHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchH
Q 015230 288 PLAMTAGIHTLK---RLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 362 (411)
Q Consensus 288 ~~~~a~~~~~l~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 362 (411)
...+.++.+.+. ...+ ++.+.+++++.+.+.+.|+ ..++.......|+++|+++...... ....
T Consensus 305 ~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~gi~~~~p~gg~f~w~~l~~~~~~-------~~~~ 373 (431)
T d1m7ya_ 305 SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQ----KSGISCLNGNAGLFCWVDMRHLLRS-------NTFE 373 (431)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTTCEECCCCSSSEEEEECGGGSSS-------SSHH
T ss_pred ccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhh----cCCcEEecCCceeEEEEECcccccc-------Cccc
Confidence 333333333332 1111 2333444444444444443 3355444455688999998643211 1223
Q ss_pred HHHHHHHHHH-HcCeEeccCC------CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 363 KFARFYRGML-EEGVYFAPSQ------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 363 ~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
+..++++.|. ++||.+.|+. .+.+|++++. +++++++++++|++++++
T Consensus 374 ~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 374 AEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp HHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence 3456666665 5599999863 2358998764 778899999999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.4e-24 Score=196.39 Aligned_cols=311 Identities=12% Similarity=0.109 Sum_probs=203.2
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC----CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 108 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~a 108 (411)
..++.++++..|- ++++ .++.+.+++.+.+...... .+..++++++++++....-.+++|++|+|+++++..+
T Consensus 16 ~~~~d~~~l~~~e--np~~-~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l 92 (334)
T d2f8ja1 16 TEKRDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (334)
T ss_dssp CCCCCSEECSSCC--CSSC-CCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHH
T ss_pred ccCCCceEEECCC--CCCC-CCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHH
Confidence 4677888887774 6666 5788999999888763211 2335567777777654333688999999999999887
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
++. .+.|++.+++|.+. .......|..+..++........ + . .......+++
T Consensus 93 ~~~------~d~v~i~~P~y~~~-~~~~~~~g~~~v~v~~~~~~~~~-------------~------~--~~~~~~~l~l 144 (334)
T d2f8ja1 93 MLM------FDRSVFFPPTYSCY-RIFAKAVGAKFLEVPLTKDLRIP-------------E------V--NVGEGDVVFI 144 (334)
T ss_dssp HHH------SSEEEECSSCCHHH-HHHHHHHTCCEEECCCCTTSCCC-------------C------C--CCCTTEEEEE
T ss_pred hhh------cccccccccccccc-ccchhccCCcccccccccccccc-------------c------c--ccccceEEEe
Confidence 762 37899999998764 44444556555554432211110 0 0 0112334555
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccH
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRR 266 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~ 266 (411)
++|.| ++|...+ .++|.++ .++++++|+||+|.++ ...........+...-+.|+||.++ +|+|+||+++++
T Consensus 145 ~nP~N-PtG~~~s----~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~ 218 (334)
T d2f8ja1 145 PNPNN-PTGHVFE----REEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE 218 (334)
T ss_dssp ESSCT-TTCCCCC----HHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECH
T ss_pred ccccc-ccceeec----HHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccch
Confidence 66654 4555555 4455544 5689999999999766 3222222211122222458999999 799999999999
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEE
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 345 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 345 (411)
++++.+.... .++..+..++.++.+.++..+. ++.++.++++.+++.+.|+++ ++.. ..+.|.++|+.+
T Consensus 219 ~~i~~l~~~~-----~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~-~~~~g~f~~~~~ 288 (334)
T d2f8ja1 219 KFIDAYNRVR-----LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYRI-TDSRGNFVFVFM 288 (334)
T ss_dssp HHHHHHHHHS-----CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCEE-CCCCSSEEEEEC
T ss_pred HHHHHHHHhh-----cccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHC----CCeE-CCCCceEEEEEC
Confidence 9998886422 2455677777777776654322 455566777777777777665 4332 244577888766
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
.. .+.+++.+.|+++||.+++.. +.+|+++. |.+|+++++++|++
T Consensus 289 ~~--------------~~~~~~~~~L~~~GI~vr~~~-~~vRis~g-~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 289 EK--------------EEKERLLEHLRTKNVAVRSFR-EGVRITIG-KREENDMILRELEV 333 (334)
T ss_dssp CH--------------HHHHHHHHHHHHTTEECEEET-TEEEEECC-CHHHHHHHHHHHHH
T ss_pred CC--------------CCHHHHHHHHHHCCCEECCCC-CeEEEEcC-CHHHHHHHHHHHhc
Confidence 32 345789999999999997653 67999865 67888999988875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.3e-24 Score=198.49 Aligned_cols=334 Identities=16% Similarity=0.072 Sum_probs=206.3
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccC
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
++||.+-..+.| +|++++|+.++.. +....+..+...+|.+++++.+ +.+++++++||++|+..+|+.+ ...
T Consensus 1 ~~~~~~~~~t~p----~p~v~~A~~~a~~-g~~~yg~~p~~~~le~~lA~~~-G~~~~~~~~sGt~A~~~al~a~--~~~ 72 (343)
T d1m6sa_ 1 MIDLRSDTVTKP----TEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--TQR 72 (343)
T ss_dssp CEECSCGGGCCC----CHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHH--CCT
T ss_pred CcccccccCCCC----CHHHHHHHHhhhc-CCcccCCCHHHHHHHHHHHHHH-CCCeEEEeCCHHHHHHHHHHHH--hcc
Confidence 367776543334 7999999876632 2222345677789999999888 5778999999999999999853 334
Q ss_pred CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCC
Q 015230 118 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVG 194 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~ 194 (411)
++.+++....++..........+........+...+ ..|++.++..+... ...+..++++...+
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 139 (343)
T d1m6sa_ 73 GDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNG-------------AMDPDDVRKAIRPRNIHFPRTSLIAIENTHN 139 (343)
T ss_dssp TCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETT-------------EECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred CCceeccccccceeeecccccccccceeeccccccC-------------ccCHHHHHHhhhhhhcccccccccccccccc
Confidence 566666666554333333222222222111111111 11788888777642 23466666666666
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHh
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 272 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~ 272 (411)
+.|...++.+.+++|+++|++||+++++|+++.++ ...............+..+++|..+ +|.+.+++....+.+...
T Consensus 140 ~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 219 (343)
T d1m6sa_ 140 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERA 219 (343)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHH
T ss_pred cCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhh
Confidence 65556666777999999999999999999999866 3322221111111223445566555 345677777777665554
Q ss_pred cCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCC
Q 015230 273 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVY 351 (411)
Q Consensus 273 ~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 351 (411)
.... ...+.+...... .++.................++..++.+.+.++.. ..... ...+++++++....
T Consensus 220 ~~~~-~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~-- 290 (343)
T d1m6sa_ 220 RKAR-KMLGGGMRQAGV--LAAAGIIALTKMVDRLKEDHENARFLALKLKEIGY----SVNPEDVKTNMVILRTDNLK-- 290 (343)
T ss_dssp HHHH-HHHTCCCSSTHH--HHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTC----BCCGGGCCSSEEEEECTTSS--
T ss_pred HhhC-cccccccchhHH--HHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhcc----CccCCCCCceEEEEEeCCCc--
Confidence 4211 112223333222 22222222233355566677777777777777632 11111 23467777664322
Q ss_pred CcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 352 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
..+.++.+.|+++||++.+.+.+.+|+ +..+|+++||+++++|+++++++
T Consensus 291 ----------~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 ----------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp ----------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------ccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 224689999999999999988888887 57789999999999999999874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.2e-24 Score=198.36 Aligned_cols=285 Identities=12% Similarity=0.099 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCc-EEEEEeCCcCCCchhhhhhcCCCCcccCCCC
Q 015230 73 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRE-RIIKFEGCYHGHADPFLVKAGSGVATLGLPD 150 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~-~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 150 (411)
|++....+|.+++++.++ .+++|++|+|+++++..+++.. ..+++ .|++.+++|. .+.......|..+...+...
T Consensus 53 YPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~--~~pgd~~Vl~~~P~y~-~~~~~~~~~g~~v~~~~~~~ 129 (354)
T d1fg7a_ 53 YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF--CEPGKDAILYCPPTYG-MYSVSAETIGVECRTVPTLD 129 (354)
T ss_dssp CCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH--CCTTTCEEEECSSSCT-HHHHHHHHHTCEEEECCCCT
T ss_pred CCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHh--hccccccccccccccc-cchhhhhccCceeecccccc
Confidence 454444677778888787 7899999999999999999842 22344 4555666665 45555556666555543332
Q ss_pred CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 151 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
...+ |+++++..+. +++++++.+.+|++|.+.+ ++.++.+.+.++ ++.++|+||+|.+|
T Consensus 130 ~~~~--------------d~~~l~~~~~----~~~~v~~~~pnNPtG~~~~-~~~~~~~~~~~~-~~~~~iidd~~~~f~ 189 (354)
T d1fg7a_ 130 NWQL--------------DLQGISDKLD----GVKVVYVCSPNNPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFC 189 (354)
T ss_dssp TSCC--------------CHHHHHTSCT----TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred cccc--------------chhhhhhccc----ccceeeccCCCccceeEee-eccccccccccc-ccccccccccchhhc
Confidence 2222 7777765443 5777777777777776665 444677666665 67888888888777
Q ss_pred ccccCc-cccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH--Hhc-C
Q 015230 230 RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR--LKE-P 304 (411)
Q Consensus 230 ~~g~~~-~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~--~~~-~ 304 (411)
...... .........-+.||||.++ +|+|+||+++++++++.+... ...+..+.+++.++.+++.. ... .
T Consensus 190 ~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (354)
T d1fg7a_ 190 PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKV-----IAPYPLSTPVADIAAQALSPQGIVAMR 264 (354)
T ss_dssp GGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHH-----SCSSCSCHHHHHHHHHHTSHHHHHHHH
T ss_pred cccccchhhcccccceEEeCCccccCCCccccccccccchhhhhhhhh-----cCccchhhHHHHHHHHHHhhhcccccc
Confidence 332221 1111111112348999999 899999999999999888632 22445555665555544321 111 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-
Q 015230 305 GTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ- 382 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~- 382 (411)
...+++++..+++.+.++++ +....+ ...|+|+|+++.+ ..++.+.|.++||+|++++
T Consensus 265 ~~~~~~~~~r~~l~~~l~~~----~~~~~~~p~~~~f~~~~~~~----------------~~~~~~~L~~~gIlvr~~~~ 324 (354)
T d1fg7a_ 265 ERVAQIIAEREYLIAALKEI----PCVEQVFDSETNYILARFKA----------------SSAVFKSLWDQGIILRDQNK 324 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHS----TTEEEECCCSSSEEEEEETT----------------HHHHHHHHHHTTEECEECTT
T ss_pred ccchhhhhHHHHHHHHHHhC----CCcceeCCCCceEEEEeCCC----------------HHHHHHHHHHCCcEEecCCC
Confidence 23344555555555555544 544332 4467789988732 2578899999999998764
Q ss_pred ----CcceeeecCCCHHHHHHHHHHHHH
Q 015230 383 ----FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 383 ----~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
.+++|+++. |++++++++++|+.
T Consensus 325 ~~~~~~~lRisig-t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 325 QPSLSGCLRITVG-TREESQRVIDALRA 351 (354)
T ss_dssp STTCTTEEEEECC-CHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEeC-CHHHHHHHHHHHhh
Confidence 245788864 78899999999873
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.91 E-value=2.3e-24 Score=201.54 Aligned_cols=337 Identities=12% Similarity=0.051 Sum_probs=205.1
Q ss_pred EEeccCCccccccCC--CcHHHHHHHHHHHHcCCC--C---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCC--hHHHH
Q 015230 38 YIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTS--F---GAPCLLENVLAEMVISAVP---SIEMVRFVNS--GTEAC 105 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~--~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~--g~~a~ 105 (411)
.+|+..|...++-|. ..+.|++|..+.+++... | .+..++++++++++.+..+ ..+.++.+.+ ++.++
T Consensus 30 ~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~ 109 (401)
T d7aata_ 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred cEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHH
Confidence 488887744445554 457888888888777432 3 2447889999999988775 4566655543 33333
Q ss_pred HHHHHHHHh-ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 106 MGVLRLARA-FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 106 ~~al~~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
.+...+++. ...++.|++.+|+|+.. .......|..+..++.....+... +.+.+.+.+....+++
T Consensus 110 ~~~~~~~~~l~~pGd~Vlv~~P~y~~y-~~~~~~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 176 (401)
T d7aata_ 110 RVGANFLQRFFKFSRDVYLPKPSWGNH-TPIFRDAGLQLQAYRYYDPKTCSL------------DFTGAMEDISKIPEKS 176 (401)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCTTH-HHHHHHTTCEEEEEECEETTTTEE------------CHHHHHHHHTTSCTTC
T ss_pred HHHHHhhHhhcCCCceEEEecCCCcch-hhHHHHcCCeEEEEeccccccccc------------cHHHHHHHHhcCCCce
Confidence 333322223 45678899999999864 444555566555544322222211 7788888877655567
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC---c-cccccCCC---cchhhhhhhcc-C
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---G-AQEYFGVT---PDLTTLGKIIG-G 255 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~---~-~~~~~~~~---~d~~~~sK~~~-~ 255 (411)
+++++++.+|++|.... .+.+++|.++|++|++++|+||+|.++ ..+.. . ........ .-+.++||.++ .
T Consensus 177 ~~iii~~p~NPTG~~~s-~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~ 255 (401)
T d7aata_ 177 IILLHACAHNPTGVDPR-QEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY 255 (401)
T ss_dssp EEEEESSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG
T ss_pred EEEEecCCCCCccccCC-HHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceee
Confidence 77777776777776554 555999999999999999999999988 43311 1 11111111 22348999998 7
Q ss_pred CcccccccccHHHHHHhcCCCC----cccccCCCCCHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHHHHHHHHH
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~a~~~~~l~~------~~~--~~~~~~~~~~~~~~~~~l~~ 323 (411)
|+|+||++++...++....... .......+.+.+.++++...++. +.. +.++++++++.+.+.+.|++
T Consensus 256 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 335 (401)
T d7aata_ 256 GERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKK 335 (401)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887654443321000 00111234445555555444431 111 34445555666666666665
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHHHHHHHH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTIT 402 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~i~~~i~ 402 (411)
+.....+.......|+|+|+.+.. +.+.+.+.++||.+.|+. |++++ .++++|+.+.+
T Consensus 336 ~~~~~~~~~~~~~~G~F~~~~ls~-----------------e~~~~L~~e~gV~~~pg~----Ris~a~~~~~~i~~la~ 394 (401)
T d7aata_ 336 EGSSHNWQHITDQIGMFCFTGLKP-----------------EQVERLTKEFSIYMTKDG----RISVAGVASSNVGYLAH 394 (401)
T ss_dssp TTCCSCCHHHHHCCSSEEECCCCH-----------------HHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHH
T ss_pred hCCCCCcceECCCCeEEEecCCCH-----------------HHHHHHHHhCCEEECCCc----EEEeccCCHHHHHHHHH
Confidence 532211222234567787764411 233344566799999974 88764 68899999999
Q ss_pred HHHHHHH
Q 015230 403 AAEKVLR 409 (411)
Q Consensus 403 ~l~~~~~ 409 (411)
+|.++++
T Consensus 395 ai~~v~k 401 (401)
T d7aata_ 395 AIHQVTK 401 (401)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998864
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.91 E-value=1.3e-23 Score=197.06 Aligned_cols=339 Identities=10% Similarity=0.003 Sum_probs=202.1
Q ss_pred EEeccCCccccccCC--CcHHHHHHHHHHHHcCC-C--C---CCCCHHHHHHHHHHHhhCC---CCC--EEEEeCChHHH
Q 015230 38 YIDYVGSWGPAIIGH--ADDQVLAALGETMKKGT-S--F---GAPCLLENVLAEMVISAVP---SIE--MVRFVNSGTEA 104 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~-~--~---~~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~~a 104 (411)
.||+..+...++-|. ..|.|++|....+.... . | .+..++++++++++.+..+ ..+ .++.|.+++.+
T Consensus 32 ~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (412)
T d1ajsa_ 32 KVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA 111 (412)
T ss_dssp CEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhH
Confidence 478888743344553 34667777555444321 1 2 3458888999999887664 233 45677788888
Q ss_pred HHHHHHHHHh-----ccCCcEEEEEeCCcCCCchhhhhhcCC-CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH
Q 015230 105 CMGVLRLARA-----FTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 178 (411)
Q Consensus 105 ~~~al~~~~~-----~~~~~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 178 (411)
+..+...+.. ..+++.|++.+++|... .......|. .+.+.+..+...... |.+.+++.+.
T Consensus 112 ~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y-~~~~~~~G~~~v~~~~~~~~~~~~~------------d~~~~~~~~~ 178 (412)
T d1ajsa_ 112 LRIGAEFLARWYNGTNNKDTPVYVSSPTWENH-NGVFTTAGFKDIRSYRYWDTEKRGL------------DLQGFLSDLE 178 (412)
T ss_dssp HHHHHHHHHHHSSSSSCCCSCEEEEESCCTHH-HHHHHHTTCSCEEEEECEETTTTEE------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCCEEEEeCCcchhh-HHHHHHcCCeEEEeecccccccccc------------cHHHHHHHHH
Confidence 8777654322 35678899999999754 444444444 333322222222111 7788777777
Q ss_pred cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC---cc-cccc---CCCcchhhhh
Q 015230 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GA-QEYF---GVTPDLTTLG 250 (411)
Q Consensus 179 ~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~---~~-~~~~---~~~~d~~~~s 250 (411)
...++++++++++.+|++|.+. +++.+++|.++|++|++++|+||+|.++ ..+.. .. .... ....-+.++|
T Consensus 179 ~~~~~~~~il~~~P~NPTG~v~-s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 257 (412)
T d1ajsa_ 179 NAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFS 257 (412)
T ss_dssp HSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECT
T ss_pred hccCCcEEEEecCCCCCcCCCC-CHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccc
Confidence 6555667777766666666554 4555999999999999999999999977 43311 11 0011 1112234789
Q ss_pred hhcc-CCcccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHHH
Q 015230 251 KIIG-GGLPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGEL 317 (411)
Q Consensus 251 K~~~-~G~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~------~~~--~~~~~~~~~~~~~~ 317 (411)
|.++ .|+|+||++++....+.+... .....+...+.+.++++++.+.+.. +.+ +.++++++++.+.+
T Consensus 258 k~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l 337 (412)
T d1ajsa_ 258 KNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSEL 337 (412)
T ss_dssp TTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 699999997764333222100 0011122334455666655544431 111 34445555666666
Q ss_pred HHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHH
Q 015230 318 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDD 396 (411)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~ 396 (411)
.+.|+++.....+.......|+|.|+.+. . +.+.+.+.++||++.|++ |++++ .++++
T Consensus 338 ~~~L~~~~~~~~~~~i~~~~G~F~~~~ls--------------~---~~v~~L~~e~gV~~vpg~----Ri~~ag~~~~~ 396 (412)
T d1ajsa_ 338 RARLEALKTPGTWNHITDQIGMFSFTGLN--------------P---KQVEYLINQKHIYLLPSG----RINMCGLTTKN 396 (412)
T ss_dssp HHHHHHTTCSSCCHHHHHCCSSEEECCCC--------------H---HHHHHHHHTTCEECCTTS----EEEGGGCCTTT
T ss_pred HHHHHHhCCCCCeeeecCCCeEEEecCCC--------------H---HHHHHHHHhCCEEEeCCC----eEEeccCCHHH
Confidence 66665542211111112345767664331 1 334455567799999975 88764 68899
Q ss_pred HHHHHHHHHHHHHhC
Q 015230 397 IQHTITAAEKVLRQI 411 (411)
Q Consensus 397 i~~~i~~l~~~~~~~ 411 (411)
++.+.++|.++++++
T Consensus 397 i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 397 LDYVATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=9.7e-24 Score=197.00 Aligned_cols=336 Identities=16% Similarity=0.068 Sum_probs=202.3
Q ss_pred EEeccCCccccccCC--CcHHHHHHHHHHHHcCCC--C---CCCCHHHHHHHHHHHhhCC---CCC--EEEEeCChHHHH
Q 015230 38 YIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTS--F---GAPCLLENVLAEMVISAVP---SIE--MVRFVNSGTEAC 105 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~--~---~~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~~a~ 105 (411)
.||+..+...++-|. ..|.|++|..+.+++... | .+..++++.+++++.+..+ ..+ .+..+.+++.+.
T Consensus 28 kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T d2q7wa1 28 KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL 107 (396)
T ss_dssp CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence 379888844445554 457899998888776432 2 2457889999999987764 122 345666777777
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..++........++.|++.+++|......+ ...|..+...+.....+.. .+...+++...+...++.
T Consensus 108 ~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~-~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 174 (396)
T d2q7wa1 108 RVAADFLAKNTSVKRVWVSNPSWPNHKSVF-NSAGLEVREYAYYDAENHT------------LDFDALINSLNEAQAGDV 174 (396)
T ss_dssp HHHHHHHHHHSCCCEEEEEESCCTHHHHHH-HHTTCEEEEEECEETTTTE------------ECHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHhhcccceEEEEecCCCccchHHH-HHcCCeeEecccccccccc------------cccchHHHHHHHhccCcE
Confidence 666654435567889999999998654443 4444433333221111110 056666666665555666
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccc----cccCCCcchhhhhhhcc-CCc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQ----EYFGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~----~~~~~~~d~~~~sK~~~-~G~ 257 (411)
++++++.+|++|... +.+.+++|.++|++|++++|+||+|.++ ..+.. ... +.......+.++||.++ .|+
T Consensus 175 ~i~~~~P~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~ 253 (396)
T d2q7wa1 175 VLFHGCCHNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNE 253 (396)
T ss_dssp EEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGG
T ss_pred EEEecCCcCCcCeec-CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCC
Confidence 666666566666554 4566999999999999999999999988 43311 111 01111223457899998 699
Q ss_pred ccccccccHHHHHHhcCCCC---cc-cccCCCCCHHHHHHHHHHHH------HHhc--CChHHHHHHHHHHHHHHHHHHH
Q 015230 258 PVGAYGGRRDIMEMVAPAGP---MY-QAGTLSGNPLAMTAGIHTLK------RLKE--PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~---~~-~~~t~~~~~~~~a~~~~~l~------~~~~--~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
|+||++++...++.+..... .. .....+.+..++.++.+.+. .+++ ++++++++++.+.+.+.|+++.
T Consensus 254 R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 333 (396)
T d2q7wa1 254 RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred CccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999887554443321000 00 11122334444444443331 1111 4455666677777777777663
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAA 404 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~i~~~i~~l 404 (411)
....+.......|+|.|+.+.. +.+.+.+.++||++.+++ |++++ .++++|+.+.++|
T Consensus 334 ~~~~~~~~~~~~G~F~~~~l~~-----------------e~~~~L~~e~gV~~~~g~----Ri~~a~l~~~~i~~~~~ai 392 (396)
T d2q7wa1 334 ANRDFSFIIKQNGMFSFSGLTK-----------------EQVLRLREEFGVYAVASG----RVNVAGMTPDNMAPLCEAI 392 (396)
T ss_dssp CCSCCTHHHHCCSSEEECCCCH-----------------HHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHHHH
T ss_pred CCCCcceecCCCeEEEeeCCCH-----------------HHHHHHHHhCCEEECCCC----EEEecCCCHHHHHHHHHHH
Confidence 2211222234568887764421 233344456799999876 77654 5888999999999
Q ss_pred HHHH
Q 015230 405 EKVL 408 (411)
Q Consensus 405 ~~~~ 408 (411)
.+++
T Consensus 393 ~~v~ 396 (396)
T d2q7wa1 393 VAVL 396 (396)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.89 E-value=2e-22 Score=188.70 Aligned_cols=337 Identities=13% Similarity=0.073 Sum_probs=201.8
Q ss_pred EEeccCCccccccCC--CcHHHHHHHHHHHHcC-CC--C---CCCCHHHHHHHHHHHhhCC---CCCEE--EEeCChHHH
Q 015230 38 YIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TS--F---GAPCLLENVLAEMVISAVP---SIEMV--RFVNSGTEA 104 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~-~~--~---~~~~~~~~~l~~~l~~~~~---~~~~v--~~~~~g~~a 104 (411)
.||+..+...++.|. ..|.|++|........ .. | .+..++++.+++++.+..+ ..+.+ ..+.++..+
T Consensus 31 kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1yaaa_ 31 KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA 110 (412)
T ss_dssp CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence 479887744455554 2366777644333221 11 2 2457888999998887664 22222 333445555
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..++.+.....+++.|++.+++|... .......|..+...+......... +.+.++..+...+..+
T Consensus 111 ~~~~~~~~~~~~~gd~Vlip~P~~~~y-~~~~~~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 177 (412)
T d1yaaa_ 111 LHISAKFFSKFFPDKLVYLSKPTWANH-MAIFENQGLKTATYPYWANETKSL------------DLNGFLNAIQKAPEGS 177 (412)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCTTH-HHHHHTTTCCEEEEECEETTTTEE------------CHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHhccCCCCEEecccccCchh-HHHHHHcCCceecccccccccccc------------cchhhhcccccCCCce
Confidence 555554333445678899999988854 444445555444443322222111 6777887777666667
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-c------ccccCCCc---chhhhhhhc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A------QEYFGVTP---DLTTLGKII 253 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~------~~~~~~~~---d~~~~sK~~ 253 (411)
.++++++.+|++|.... ++.+++|.++|++|++++|+||+|.+| ..+... . .......+ -+.++||.+
T Consensus 178 ~~i~i~~P~NPTG~~~s-~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 256 (412)
T d1yaaa_ 178 IFVLHSCAHNPTGLDPT-SEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA 256 (412)
T ss_dssp EEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS
T ss_pred EEEEecCCCCCccccCC-HHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc
Confidence 77777777777776554 556999999999999999999999988 433110 0 11111122 234899999
Q ss_pred c-CCcccccccccHHHHHHhcC--------CCCcccccCCCCCHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHH
Q 015230 254 G-GGLPVGAYGGRRDIMEMVAP--------AGPMYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGE 316 (411)
Q Consensus 254 ~-~G~~~g~~~~~~~~~~~~~~--------~~~~~~~~t~~~~~~~~a~~~~~l~~------~~~--~~~~~~~~~~~~~ 316 (411)
+ .|+|+||++++.++++.+.. ..........+.+.+++.++..++.. +.. +.+++.++++.+.
T Consensus 257 ~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 336 (412)
T d1yaaa_ 257 GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHA 336 (412)
T ss_dssp CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 79999999876433211110 00011223456667777776665542 111 4455666666666
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCCcceeeecC-CCH
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSS 394 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~~~~~~~~-~t~ 394 (411)
+.+.|+++.....+.......|+|+|+.+. .++++.| .++||++.+++ |++++ .++
T Consensus 337 l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls------------------~e~~~~L~~e~~V~~~~g~----Ris~~g~~~ 394 (412)
T d1yaaa_ 337 LRDHLVKLGTPGNWDHIVNQCGMFSFTGLT------------------PQMVKRLEETHAVYLVASG----RASIAGLNQ 394 (412)
T ss_dssp HHHHHHHHTCSSCCTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTTS----EEEGGGCCT
T ss_pred HHHHHHHhCCCCCCceeCCCceEEEecCcC------------------HHHHHHHHHhCCEEECCCC----EEEeccCCH
Confidence 777776653221122223345777665431 2234444 66799998874 77654 688
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
++++.+.++|.++++.
T Consensus 395 ~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 395 GNVEYVAKAIDEVVRF 410 (412)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999999999998864
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=9.6e-23 Score=185.89 Aligned_cols=327 Identities=12% Similarity=0.007 Sum_probs=183.9
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccC
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
++||.|. |+.| .||+|++|+.++........+.++..+++.+++++.++....++||+||++|+..++..+ ...
T Consensus 4 ~~~f~s~---n~~g-~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~--~~~ 77 (345)
T d1v72a1 4 ALGFSSD---NIAG-ASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM--TPP 77 (345)
T ss_dssp CCBCSCG---GGCC-CCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS--CCT
T ss_pred CcCcCCC---CCCC-CCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHH--Hhc
Confidence 5789886 6666 799999999887554322234678889999999999975567999999999999999843 223
Q ss_pred CcEEEEEeCCcCCCc--hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---CcEEEEEEccc
Q 015230 118 RERIIKFEGCYHGHA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPV 192 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~~~~vi~~~~ 192 (411)
.+.+++.....+... .......+..+.... +...+ ..+++.+++.+.... ..+..++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (345)
T d1v72a1 78 WGNIYCHPASHINNDECGAPEFFSNGAKLMTV-DGPAA-------------KLDIVRLRERTREKVGDVHTTQPACVSIT 143 (345)
T ss_dssp TEEEEECTTSHHHHSSTTHHHHHTTSCEEEEC-CCGGG-------------CCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred CCccccccccceeeechhhHHHhcCccccccc-ccccc-------------cccHHHhhhhhcccccccccccceeeeee
Confidence 334443333222111 111122222111111 10111 127889988887531 23445555555
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC--cchhhhhhhccCCcccccc-cccHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKIIGGGLPVGAY-GGRRDI 268 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~--~d~~~~sK~~~~G~~~g~~-~~~~~~ 268 (411)
.++.+....+.+.++++.++|++||+++++|++|++. ..+........... .+..+++|..+++...+.. ......
T Consensus 144 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (345)
T d1v72a1 144 QATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSL 223 (345)
T ss_dssp SSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGG
T ss_pred ccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchhhh
Confidence 5554445555666999999999999999999999865 43332222222222 3344555555543333332 222211
Q ss_pred HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEec
Q 015230 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTE 347 (411)
Q Consensus 269 ~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~ 347 (411)
....... ......+......+ +.+....+. +..............+.+.+.....+......+ .++++++.+.
T Consensus 224 ~~~~~~~-~~~~~~~~~~~~~a---a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~- 297 (345)
T d1v72a1 224 ATEMSYR-RKRAGHLSSKMRFL---SAQIDAYLT-DDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD- 297 (345)
T ss_dssp HHHHHHH-HHHTTCCCSSTHHH---HHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-
T ss_pred hhhcccc-ccccccccchhhHH---hhhhHHHHH-HhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC-
Confidence 1111100 01111122222222 222222222 333333444444444444444444454433322 3567777662
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceee--ecCCCHHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~--~~~~t~~~i~~~i~~l~~~ 407 (411)
..+.+.|+++|+.+.+.. .+.+|+ +..+|+||||+++++|+++
T Consensus 298 -----------------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 298 -----------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp -----------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356788999999886653 345676 5788999999999999874
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.9e-22 Score=188.03 Aligned_cols=334 Identities=14% Similarity=0.035 Sum_probs=200.2
Q ss_pred EEeccCCccccccCC--CcHHHHHHHHHHHHcCCC--C---CCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHH
Q 015230 38 YIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTS--F---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGV 108 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~--~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~a 108 (411)
.||+..+..-++-|. ..|.|++|+.+.+++... | .+..++++++++++.+... .....+.+.+|+.+...+
T Consensus 28 ~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (394)
T d2ay1a_ 28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQA 107 (394)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHH
T ss_pred CEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHH
Confidence 368777743334554 457899998888876432 3 2447889999999887664 345667777777777766
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
+.+.....+++.|++.+++|.. +.......|..+..++........ .+.+++++.....++++.+++
T Consensus 108 ~~~~~~~~~gd~V~~p~p~~~~-y~~~~~~~g~~~v~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~ 174 (394)
T d2ay1a_ 108 LELARMANPDLRVFVSDPTWPN-HVSIMNFMGLPVQTYRYFDAETRG------------VDFEGMKADLAAAKKGDMVLL 174 (394)
T ss_dssp HHHHHHHCTTCCEEEEESCCHH-HHHHHHHHTCCEEEEECEETTTTE------------ECHHHHHHHHHTCCTTCEEEE
T ss_pred HHHhhhcCCceEEEEecccccc-hHHHHHHcCCEEEEecccchhccc------------ccchhHHHHHhhcccCcEEEE
Confidence 6554455677888888888874 444445555544443321111110 056777777666555666666
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--cccc---ccCC-Ccchhhhhhhcc-CCcccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQE---YFGV-TPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~~---~~~~-~~d~~~~sK~~~-~G~~~g 260 (411)
+.+.+|++|... +.+.+++|.++|++|++++|+||+|.++ ..+.. .... ..+. ...+.++||.++ .|+|+|
T Consensus 175 ~~~p~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G 253 (394)
T d2ay1a_ 175 HGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTG 253 (394)
T ss_dssp ESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEE
T ss_pred eCCCCCCCCCCC-CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCccccc
Confidence 666666666554 4566999999999999999999999988 43311 1100 0111 122447999998 699999
Q ss_pred cccccHHHHHHhcCCC----CcccccCCCCCHHHHHHHHHHHH------HHhc--CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 261 AYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLK------RLKE--PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~a~~~~~l~------~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
|+.++...++...... ..........+...++.+...+. .+.+ +.++++++++.+.+.+.|+++....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 333 (394)
T d2ay1a_ 254 CLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD 333 (394)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred chhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9977644333221100 00011122233333433333321 1111 3455666666666667776664321
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCCcceeeec-CCCHHHHHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEK 406 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~~~~~~~-~~t~~~i~~~i~~l~~ 406 (411)
.+.......|+|+|+.+. .+.++.| .++||++.|++ |+++ +.++++|+.+.++|.+
T Consensus 334 ~~~~~~~~~G~F~~~~ls------------------~~~~~~L~~~~~V~~~~g~----Ri~~a~l~~~~i~~l~~ai~~ 391 (394)
T d2ay1a_ 334 RFGFVAEHRGMFSRLGAT------------------PEQVKRIKEEFGIYMVGDS----RINIAGLNDNTIPILARAIIE 391 (394)
T ss_dssp TTTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHHHHHH
T ss_pred ceeeECCCceeEEecCcC------------------HHHHHHHHHhCCEEecCCC----EEEecCCCHHHHHHHHHHHHH
Confidence 222223456888887552 2234444 56799999974 7764 4688999999998887
Q ss_pred H
Q 015230 407 V 407 (411)
Q Consensus 407 ~ 407 (411)
+
T Consensus 392 v 392 (394)
T d2ay1a_ 392 V 392 (394)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-22 Score=189.90 Aligned_cols=334 Identities=12% Similarity=0.017 Sum_probs=192.7
Q ss_pred EeccCCccccccCC--CcHHHHHHHHHHHHcC--C-CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHH
Q 015230 39 IDYVGSWGPAIIGH--ADDQVLAALGETMKKG--T-SF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 39 ~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~--~-~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~ 107 (411)
||+..+...++-|. ..|.|++|........ . .| .+..++++++++++.+..+ ..++++.+.+++.+...
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 88888754455554 2466777755443321 1 12 2457889999999887765 47788887776666554
Q ss_pred HHHHHH--hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 108 VLRLAR--AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 108 al~~~~--~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
++.++. ...+++.|++.+++|......+ ...|..+..++......... |.+++.+.+...+.+.+
T Consensus 109 ~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~-~~~G~~~~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 175 (397)
T d3tata_ 109 KVGADFLKRYFPESGVWVSDPTWENHVAIF-AGAGFEVSTYPWYDEATNGV------------RFNDLLATLKTLPARSI 175 (397)
T ss_dssp HHHHHHHHHHCSSCCCEECSSCCTTHHHHH-HTTTCCCEECCCCCTTTSSC------------CHHHHHHHHTTCCSSCC
T ss_pred HHHHHHhhhcCCCCcceecccCccccHHHH-HHcCCEEEEEecchhhcccc------------chHHHHHHhhhcccccE
Confidence 443322 2456778999999998654444 45555555544432222211 67777777776555666
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC--ccc-cccC---CCcchhhhhhhcc-CCc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQ-EYFG---VTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~--~~~-~~~~---~~~d~~~~sK~~~-~G~ 257 (411)
++++.+.+|++|... +++.+++|.++|++|++++|+||+|.++ ..+.. ... ...+ ....+.++||.++ .|+
T Consensus 176 ~~~~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~ 254 (397)
T d3tata_ 176 VLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE 254 (397)
T ss_dssp CEECSSSCSSSCCCC-CHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT
T ss_pred EEEecCCCCCCCeeC-CHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc
Confidence 666666666666554 4555999999999999999999999988 33211 111 1111 1223458999998 699
Q ss_pred ccccccccHHHHHHhcC----CCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHH---HHHHHHHHHhcC
Q 015230 258 PVGAYGGRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGEL---TQGIIDAGKKAG 329 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~---~~~l~~~~~~~~ 329 (411)
|+||++++...++.... ..........+.+...++++...+..... .+..+.++...+++ ++.+.+......
T Consensus 255 RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 334 (397)
T d3tata_ 255 RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM 334 (397)
T ss_dssp CCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred cccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999765433221110 00001122233344555554444321111 22222222222222 222222211111
Q ss_pred ----CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCCcceeeec-CCCHHHHHHHHHH
Q 015230 330 ----HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITA 403 (411)
Q Consensus 330 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~~~-~~t~~~i~~~i~~ 403 (411)
+.......|+|+|+.+. .+.++.|. +.||++.+++ |+++ +.++++|+++.++
T Consensus 335 ~~~~~~~~~~~~G~F~~~~ls------------------~e~~~~L~~e~~V~l~~g~----Ri~~a~~~~~~i~~~~~a 392 (397)
T d3tata_ 335 PERNFDYLLNQRGMFSYTGLS------------------AAQVDRLREEFGVYLIASG----RMCVAGLNTANVQRVAKA 392 (397)
T ss_dssp TTSCTTHHHHCCSSBCCCCCC------------------HHHHHHHTTTTCEECCSSS----CCBTTSCCTTTHHHHHHH
T ss_pred CCCceEEEcCCCceEEecCcC------------------HHHHHHHHHhCCEEeCCCC----EEEeccCCHHHHHHHHHH
Confidence 22224556888887552 23455554 4599999975 7764 5688999999999
Q ss_pred HHHHH
Q 015230 404 AEKVL 408 (411)
Q Consensus 404 l~~~~ 408 (411)
|++++
T Consensus 393 i~~v~ 397 (397)
T d3tata_ 393 FAAVM 397 (397)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98763
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=1.1e-20 Score=174.20 Aligned_cols=328 Identities=13% Similarity=0.130 Sum_probs=190.1
Q ss_pred CCCcHHHHHHHHHHHHcCCC--C--------CCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 51 GHADDQVLAALGETMKKGTS--F--------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 51 g~~~~~v~~a~~~~l~~~~~--~--------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
|..+|++++|+.+..+.... + ...+..++.+.+.+++.+ +.+++++|+||++|+..++... ..+++.
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~-g~e~~~~t~g~t~a~~~~~~al--~~~gd~ 88 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL-GCDVARVTNGAREAKFAVMHSL--AKKDAW 88 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT-TSSEEEEESSHHHHHHHHHHHH--CCTTCE
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh-CcCEEEEECcHHHHHHHHHHHH--hCCCcE
Confidence 44678899988765332110 0 011235677778888877 6789999999999999999742 345677
Q ss_pred EEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC--CCcEEEEEEcccCCCCCc
Q 015230 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 121 vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~~~~~vi~~~~~~~~G~ 198 (411)
||+..++|++.... ....|..+..++..+...... |++++++.+++. ..++++|+++.+++++|.
T Consensus 89 Vi~~~~~h~s~~~~-~~~~g~~v~~v~~~~~~~~~i------------~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~ 155 (364)
T d2e7ja1 89 VVMDENCHYSSYVA-AERAGLNIALVPKTDYPDYAI------------TPENFAQTIEETKKRGEVVLALITYPDGNYGN 155 (364)
T ss_dssp EEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTCCC------------CHHHHHHHHHHHTTTSCEEEEEEESSCTTTCC
T ss_pred EEeecccccccchH-HHhccceEEEeeecccccccc------------CHHHHHhhhhhhcccCCceEEEeecCCCCCce
Confidence 87777776654333 445566555554432222211 899999999753 245778888888888999
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 278 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~ 278 (411)
+.+ +++|.++|++||+++++|++|+....+ .....++.+.-+.|++|+++++.++|+++.+++.++.+......
T Consensus 156 ~~~----l~~I~~ia~~~~i~livD~a~~~g~~~--~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~ 229 (364)
T d2e7ja1 156 LPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEK 229 (364)
T ss_dssp CCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSS
T ss_pred eec----chhheeccccccchhhccccchhhhhh--hcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccc
Confidence 998 999999999999999999999611111 11222333333447789998644689999988877665431111
Q ss_pred ccc-----cCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE-Eeeec-ceEEEEEecCC
Q 015230 279 YQA-----GTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYIS-GMFGFFFTEGP 349 (411)
Q Consensus 279 ~~~-----~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g-~~~~~~~~~~~ 349 (411)
+.. ..............++++...+ +.+. +..++.+++.+.|+++ +.... ..... ....+.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~----g~~~~~~~~~~~~~~~~~~~~~- 303 (364)
T d2e7ja1 230 YKNKEVELLGCTARGATIITLMASFPHVRERIKRWD-EEVEKARRFAAEMEKL----GIKQLGDNPHNHDLMFFHAEVL- 303 (364)
T ss_dssp CTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHT----TCEEESSSSCCSSEEEEECHHH-
T ss_pred cCcccccccccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc----CCeecCCCCCCcceEEEeccch-
Confidence 100 0111122233333344443332 3333 3345566677777665 22111 00111 1222222100
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceee-ecCCCHHHHHHHHHHHHHHHHh
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFT-SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~-~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+.. ........+...+.++|+.....+ ...+++ .+..|++++++++++|++++++
T Consensus 304 -~~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ 362 (364)
T d2e7ja1 304 -YEISK---KAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362 (364)
T ss_dssp -HHHHH---HSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHH---HhhccchHHHHHHHhcCCceecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 00000 000011245566777888654433 333455 4667999999999999999876
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.86 E-value=4.1e-21 Score=178.19 Aligned_cols=327 Identities=13% Similarity=0.116 Sum_probs=205.9
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC---CCCC-----CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFG-----APCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~---~~~~-----~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~ 105 (411)
.+.|+|.. ..|..+..+++++.+.++.. ..+. ...+..+++.+.+++.++ .+++|+||+|+|+++
T Consensus 7 ~~~yld~~------~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 7 NKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC 80 (381)
T ss_dssp TSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH
T ss_pred CCEEeeCC------cccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHh
Confidence 45566633 34556778999998887652 1111 113445667788888888 688999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh---cCCCCcccCCCCCCCCCCCCCCceeecCCCC-HHHHHHHHHcCC
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNK 181 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~ 181 (411)
..++... ...+++.|++.+..|++.......+ .|..+..++....... .+ .+.+++. ..
T Consensus 81 ~~~~~~l-~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~-------------~~~~~~l~~~---i~ 143 (381)
T d1elua_ 81 DIVLWGL-DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ-------------GDAAAVLANH---LG 143 (381)
T ss_dssp HHHHHHS-CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS-------------SCHHHHHHTT---CC
T ss_pred hhcchhh-hhcCCceEEEeccccceeeecccccccccccccccccccccccc-------------chHHHHHHhh---hc
Confidence 9988742 3456778888888887544433222 2333333221111100 02 2333332 34
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh----CCEEEEeccccccccccCccccccCCCcchh--hhhhhccC
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 255 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~----~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~ 255 (411)
.+++++++..+++++|.+.+ +++|.++|++| ++++++|.+|+ .|. ...+.....+|++ ++.|++++
T Consensus 144 ~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~---~g~-~~~~~~~~~~D~~~~s~~K~~~~ 215 (381)
T d1elua_ 144 PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS---AGS-LPLDFSRLEVDYYAFTGHKWFAG 215 (381)
T ss_dssp TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT---BTT-BCCCTTTSCCSEEEEESSSTTCC
T ss_pred ccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc---ccc-ccccccccccccccccccccccc
Confidence 67899999999999999999 99999999995 68999999996 221 1122223345654 56799987
Q ss_pred CcccccccccHHHHHHhcCCCCccc-------------------ccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHH
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQ-------------------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNK 312 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~-------------------~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~ 312 (411)
...+|++..+++..+.+.+....+. ....+.+.....+..++++.+.. +...++.++
T Consensus 216 p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~ 295 (381)
T d1elua_ 216 PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQ 295 (381)
T ss_dssp CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhh
Confidence 5567888888887776653211100 01124455555666666665544 233466777
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceeee--
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS-- 389 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~-- 389 (411)
+.+++.+.|+++.. ........+.+.++.|.+... ...+.+.+.|.++||.++..+ .+.+|++
T Consensus 296 ~~~~l~~~L~~~~~-~~~~~~~~~~~~~vsf~~~~~-------------~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~ 361 (381)
T d1elua_ 296 RSEFLWRGLNQLPH-VHCLATSAPQAGLVSFTVDSP-------------LGHRAIVQKLEEQRIYLRTIADPDCIRACCH 361 (381)
T ss_dssp HHHHHHHHHHHSTT-EEESCSSCCSSSEEEEEECSS-------------SCHHHHHHHHHHTTEECEEETTTTEEEEECC
T ss_pred HHHHHHHHHhcCCC-eEecCCCCccccEEEEEcCCC-------------CCHHHHHHHHHhCCcEEEecCCCCEEEEecC
Confidence 77788888877621 111111223566777776432 112578899999999987544 3467885
Q ss_pred cCCCHHHHHHHHHHHHH
Q 015230 390 LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~ 406 (411)
..+|++|+|++++.|++
T Consensus 362 ~~nt~edid~ll~~l~e 378 (381)
T d1elua_ 362 YITDEEEINHLLARLAD 378 (381)
T ss_dssp TTCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 55699999999999975
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.85 E-value=9.8e-21 Score=180.19 Aligned_cols=355 Identities=14% Similarity=0.021 Sum_probs=196.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.++.++||.+.+++.+.+ +... .++..+......+....+|.+.+++.+ +.++++|++||++|++.++++++
T Consensus 40 ~~~~~id~~sd~~t~~~~---~~~~----a~~~~gd~~y~~~~~~~~le~~~a~l~-g~~~~~~~~sGt~A~~~a~~~~~ 111 (465)
T d1ax4a_ 40 SSAVYIDLLTDSGTNAMS---DHQW----AAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 111 (465)
T ss_dssp GGGCSEECSCSSSCCCEE---HHHH----HHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCeeeecccccchhhhh---HHHH----HHHhhhhhhhccChHHHHHHHHHHHHH-CCCEEEECCCcHHHHHHHHHHHH
Confidence 456789999886544433 2122 223343322223455566777777776 78899999999999999999876
Q ss_pred hcc----CCcEEEEEeCCcCCCchhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecC-CCCHHHHHHHHHcC-CCcEEE
Q 015230 114 AFT----GRERIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENN-KGEIAA 186 (411)
Q Consensus 114 ~~~----~~~~vi~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~-~~~~~~ 186 (411)
.+. ..+..++. ..+|+....+. ...|.............+. ...... ..|+++++++++.. ++.+++
T Consensus 112 ~~g~~~~~~~~~~i~-~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 185 (465)
T d1ax4a_ 112 KYKQKEGKAKNPVFI-SNFHFDTTAAHVELNGCKAINIVTEKAFDSE-----TYDDWKGDFDIKKLKENIAQHGADNIVA 185 (465)
T ss_dssp HHHHHTTCCSSCEEE-ESSCCHHHHHHHHHTTCEEEECBCGGGGCTT-----SCCTTTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred HHHHhcCCCCCeEEe-ccchhhhhHHHHHHcCCeeecccccccCCCC-----CCCCccCccCHHHHHHHHHhhccccccc
Confidence 542 12222223 34554444433 3334322211110000000 000000 11899999999864 346888
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc------c-ccccCccccccCCCc------chhhhhhhc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG------F-RLAYGGAQEYFGVTP------DLTTLGKII 253 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g------~-~~g~~~~~~~~~~~~------d~~~~sK~~ 253 (411)
+++++.++++|...++.+++++|+++|++||++||+||+|.. . +.+..+..+..++.+ |+.++||+.
T Consensus 186 ~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k 265 (465)
T d1ax4a_ 186 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 265 (465)
T ss_dssp EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred eeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeeccc
Confidence 999999999999999999999999999999999999999962 2 233333333333333 345677777
Q ss_pred cCC-cccccccccHH--HHHHhcCC-CCcccccCCCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 254 GGG-LPVGAYGGRRD--IMEMVAPA-GPMYQAGTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 254 ~~G-~~~g~~~~~~~--~~~~~~~~-~~~~~~~t~~~-~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
++| ...|+++.++. ........ .......+... ...+.+++...+.....++..++..++.+++.+.|+++..
T Consensus 266 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~-- 343 (465)
T d1ax4a_ 266 DPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGI-- 343 (465)
T ss_dssp TTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcC--
Confidence 754 45667666532 22221100 00111222222 2333333333333333355667777778888888887632
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------Ccceee--e
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------FEAGFT--S 389 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------~~~~~~--~ 389 (411)
+.. ....+..+.++....-... ............+.+.+.||.....+ ...+|+ |
T Consensus 344 ~~v--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP 417 (465)
T d1ax4a_ 344 PIQ--YPTGGHAVFVDCKKLVPQI----PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIA 417 (465)
T ss_dssp CBC--SSCCSSEEEEESTTTCTTS----CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred ccc--cCCCcceeeeehhhhcCCC----ccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCC
Confidence 222 1223444444432110000 00111233456667778898754321 112555 3
Q ss_pred -cCCCHHHHHHHHHHHHHHHHh
Q 015230 390 -LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 -~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...|++|+|.+++.|++++++
T Consensus 418 ~~~~T~eeiD~vv~~l~~v~~~ 439 (465)
T d1ax4a_ 418 RRVYTNDHMDYIADALIGLKEK 439 (465)
T ss_dssp TTSSCHHHHHHHHHHHHTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 466999999999999987653
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=8.6e-21 Score=174.51 Aligned_cols=207 Identities=12% Similarity=0.107 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEe-CCcCCCc
Q 015230 56 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE-GCYHGHA 132 (411)
Q Consensus 56 ~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~-~~~~~~~ 132 (411)
.+.++..+.++. +.++......+.+...+.++ ..+++++++||++|+..++. .+.+++++++.. ...|..+
T Consensus 33 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~---al~~~~~vi~~~~~~~~~~~ 106 (366)
T d2aeua1 33 LIDEKDKALLNT---YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATIL---ALKPKKVIHYLPELPGHPSI 106 (366)
T ss_dssp CCCHHHHHHHTS---TTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH---HHCCSEEEEECSSSSCCTHH
T ss_pred CccHHHHHHHHH---hcCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHH---HhCCCCEEEEecCCCcchhH
Confidence 344444444444 22333445666666666665 46789999999999999887 455677776654 3455554
Q ss_pred hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC-CCCccCCCHHHHHHHHH
Q 015230 133 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~-~~G~~~~~~~~l~~i~~ 211 (411)
.......|.. .++++|++++++.++ +++++|+++.+++ +++...+ +++|.+
T Consensus 107 ~~~~~l~g~~---------------------~v~~~d~e~l~~~i~---~~tk~i~~~~p~n~~~~~~~~----l~~i~~ 158 (366)
T d2aeua1 107 ERSCKIVNAK---------------------YFESDKVGEILNKID---KDTLVIITGSTMDLKVIELEN----FKKVIN 158 (366)
T ss_dssp HHHHHHTTCE---------------------EEEESCHHHHHTTCC---TTEEEEEECBCTTSCBCCHHH----HHHHHH
T ss_pred HHHHHhcCCe---------------------EECCCCHHHHHHhcC---CCceEEEEEecCCCCcCCHHH----HHHHHH
Confidence 4444444331 123458888887776 5688888876544 4444444 999999
Q ss_pred HHHHhCCEEEEecccccc-c--cccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCH
Q 015230 212 ITKENGALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~-~--~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 288 (411)
+|++||+++++||+|... . .+.... ..++.+..+.|+||+++ |+|+||+++++++++.+... .....++.++
T Consensus 159 ia~~~~~~~i~De~y~~~~~~~~~~~~~-~~~~~di~~~S~sK~~~-g~~~G~i~~~~~~i~~~~~~---~~~~g~~~~~ 233 (366)
T d2aeua1 159 TAKNKEAIVFVDDASGARVRLLFNQPPA-LKLGADLVVTSTDKLME-GPRGGLLAGKKELVDKIYIE---GTKFGLEAQP 233 (366)
T ss_dssp HHHHHTCCEEEECTTHHHHHHHTTCCCH-HHHTCSEEEEETTSSSS-SCSCEEEEEEHHHHHHHHHH---HHTTTCBCCH
T ss_pred HhccCcEEEEEecCccccccccccCCCH-hhcCceEEEeccccccc-ccceeEEEecHHHHHHHHHH---HhcccccCCH
Confidence 999999999999999632 1 122111 12344333446667654 78999999999999888631 1223456677
Q ss_pred HHHHHHHHHHHHH
Q 015230 289 LAMTAGIHTLKRL 301 (411)
Q Consensus 289 ~~~a~~~~~l~~~ 301 (411)
+.+.++.++++.+
T Consensus 234 ~~~~a~~~aL~tl 246 (366)
T d2aeua1 234 PLLAGIYRALKNF 246 (366)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 8888877777644
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5.4e-19 Score=164.73 Aligned_cols=320 Identities=13% Similarity=0.098 Sum_probs=209.8
Q ss_pred CCCcHHHHHHHHHHHHcCCCCC--CC-------CHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHH--HhccC
Q 015230 51 GHADDQVLAALGETMKKGTSFG--AP-------CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA--RAFTG 117 (411)
Q Consensus 51 g~~~~~v~~a~~~~l~~~~~~~--~~-------~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~--~~~~~ 117 (411)
+..++.+.+++.+.+++..... .. .+..++..+.+++.++ .++.++|++++|+++..+++.. ....+
T Consensus 32 ~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~ 111 (405)
T d1jf9a_ 32 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRA 111 (405)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCT
T ss_pred cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCC
Confidence 3478899999999887742221 11 2345666778888887 3579999999999999888642 24567
Q ss_pred CcEEEEEeCCcCCCchhhhhhc---CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCC
Q 015230 118 RERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~ 194 (411)
++.|++.+..||+......... |..+..++......+ |++.+++++. +++++|.+..+++
T Consensus 112 g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~--------------~~~~~~~~i~---~~t~lv~~~~v~~ 174 (405)
T d1jf9a_ 112 GDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTL--------------QLETLPTLFD---EKTRLLAITHVSN 174 (405)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCB--------------CGGGHHHHCC---TTEEEEEEESBCT
T ss_pred CCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcC--------------CHHHHHHhcc---CCcEEEEEecCCC
Confidence 7889999999998776665442 444444433221111 6677776655 5899999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhc
Q 015230 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~ 273 (411)
.+|.+.| +++|.++|+++|+++++|.+|+ .|. ......++.+.-+.+.-|++|+ --+|+++.+++..+.+.
T Consensus 175 ~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~---~g~~~id~~~~~~D~~~~s~hK~~Gp-~G~g~l~v~~~~~~~~~ 246 (405)
T d1jf9a_ 175 VLGTENP----LAEMITLAHQHGAKVLVDGAQA---VMHHPVDVQALDCDFYVFSGHKLYGP-TGIGILYVKEALLQEMP 246 (405)
T ss_dssp TTCCBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHHTCSEEEEEGGGTTSC-SSCEEEEECHHHHTTCC
T ss_pred cccccCc----hHHhhhHHHHcCCeeeccccee---ccccccchhhcCCceeeccccccccC-CCceeeeechhhhcccC
Confidence 9999999 9999999999999999999997 332 1222333333324467799753 12788889988877654
Q ss_pred CCCCccc-------------------ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 274 PAGPMYQ-------------------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 274 ~~~~~~~-------------------~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+...... ...-+.+..+..+..++++.+.+.. .+++.+....+.+.+.+.....+.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~L~~~~~~~l~~~~~~~~~ 325 (405)
T d1jf9a_ 247 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQNLMHYALSQLESVPDLTLY 325 (405)
T ss_dssp CSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred cccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhhhhcCCccccc
Confidence 3111000 0112456777777777887665411 2334444444444444443333443222
Q ss_pred --eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------------cceee--ecCCCHHHHH
Q 015230 335 --GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFT--SLAHSSDDIQ 398 (411)
Q Consensus 335 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------------~~~~~--~~~~t~~~i~ 398 (411)
...+.++.|.+...+ ...+...|.++||.++.+.. ..+|+ ...+|++|+|
T Consensus 326 ~~~~r~~ivsf~~~~~~--------------~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid 391 (405)
T d1jf9a_ 326 GPQNRLGVIAFNLGKHH--------------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD 391 (405)
T ss_dssp SCTTCCSEEEEEETTCC--------------HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHH
T ss_pred CCcCcCcEEEEEcCCCC--------------HHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 224556677663321 25677888899999976542 23676 4677999999
Q ss_pred HHHHHHHHHHHh
Q 015230 399 HTITAAEKVLRQ 410 (411)
Q Consensus 399 ~~i~~l~~~~~~ 410 (411)
++++.|+++++-
T Consensus 392 ~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 392 RLVTGLQRIHRL 403 (405)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.9e-20 Score=172.91 Aligned_cols=318 Identities=15% Similarity=0.094 Sum_probs=184.8
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCC-----------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh--ccC
Q 015230 52 HADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--FTG 117 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~~~-----------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~--~~~ 117 (411)
..+|.+++++.+.+.....++.+ .+..+++.+.+++.++ .+++|+|++|+|+++..++..... ..+
T Consensus 13 p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~ 92 (391)
T d1p3wa_ 13 PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKK 92 (391)
T ss_dssp CCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCC
Confidence 47899999999988764333211 2334456677788887 788999999999999988875432 356
Q ss_pred CcEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 118 RERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
++.|++.+..|++.......+ .|..+..++......+ |+++++++++ +++++|+++.+++.
T Consensus 93 gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~--------------d~~~~~~~i~---~~T~lv~is~~~n~ 155 (391)
T d1p3wa_ 93 GKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGII--------------DLKELEAAMR---DDTILVSIMHVNNE 155 (391)
T ss_dssp CCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCC--------------CHHHHHHHCC---TTEEEEECCSBCTT
T ss_pred CCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeE--------------cHHHHHHhCC---CCcEEEEEECCCCC
Confidence 788888888887654433322 2444444333221111 7888888886 57999999999999
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcch--hhhhhhccCCcccccccccHHHHHHhc
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~~~~ 273 (411)
+|.+.| +++|.++|++||+++++|.+|+ .|. ...+.....+|+ .+..|++++ ..+|+++.+++......
T Consensus 156 tG~~~~----~~~I~~~~~~~~~~~ivD~~~~---~g~-~~~d~~~~~~D~~~~s~~k~~g~-~g~g~~~~~~~~~~~~~ 226 (391)
T d1p3wa_ 156 IGVVQD----IAAIGEMCRARGIIYHVDATQS---VGK-LPIDLSQLKVDLMSFSGHKIYGP-KGIGALYVRRKPRVRIE 226 (391)
T ss_dssp TCCBCC----HHHHHHHHHHHTCEEEEECTTT---BTT-BCCCTTTSCCSEEEEESTTTTSC-SSCEEEEECBTTBCCCC
T ss_pred CeeECC----HHHHHHHhccCCcEEEEeeccc---cCC-ccccchhccccccccccccccCC-CceEEEEEecchhcccC
Confidence 999999 9999999999999999999996 221 111222233454 466788753 23677777766544443
Q ss_pred CCCCccc----ccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEec
Q 015230 274 PAGPMYQ----AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347 (411)
Q Consensus 274 ~~~~~~~----~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 347 (411)
+...... ......+.....+....++...+ .+..+++++...++.+.|.++....-..........++.+....
T Consensus 227 ~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T d1p3wa_ 227 AQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNY 306 (391)
T ss_dssp CSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETT
T ss_pred CcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCC
Confidence 2111100 01122232222222223332222 23344555555555555544321100000001112233333321
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------------------cceeee--cCCCHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFTS--LAHSSDDIQHTIT 402 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----------------------~~~~~~--~~~t~~~i~~~i~ 402 (411)
. ....+...+. ++.++.+.. +.+|++ ..+|++|+|++++
T Consensus 307 ~--------------~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~ 370 (391)
T d1p3wa_ 307 V--------------EGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIE 370 (391)
T ss_dssp S--------------CHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred C--------------ChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHH
Confidence 1 1234445443 454443211 136775 5569999999999
Q ss_pred HHHHHHHhC
Q 015230 403 AAEKVLRQI 411 (411)
Q Consensus 403 ~l~~~~~~~ 411 (411)
.|+++++++
T Consensus 371 ~l~~~l~~l 379 (391)
T d1p3wa_ 371 LVRKSIGRL 379 (391)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.82 E-value=7.7e-18 Score=157.01 Aligned_cols=314 Identities=13% Similarity=0.115 Sum_probs=206.2
Q ss_pred CCcHHHHHHHHHHHHcCCCC--CCC-------CHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHH--HhccCC
Q 015230 52 HADDQVLAALGETMKKGTSF--GAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA--RAFTGR 118 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~--~~~-------~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~--~~~~~~ 118 (411)
..++.+++++.+.+++.... ... .+..++..+.+++.++ . .+.+++++++++++..++... ....++
T Consensus 33 ~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g 112 (408)
T d1t3ia_ 33 QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAG 112 (408)
T ss_dssp CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTT
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCC
Confidence 37888999999988874322 111 2344567777888887 3 578999999999998877542 244567
Q ss_pred cEEEEEeCCcCCCchhhhhhc---CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 119 ERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
+.|++.+..|++......... |..+..++.+..... +.+.+++.++ +++++|.+..++++
T Consensus 113 ~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~--------------~~~~l~~~~~---~~t~lv~i~~~~~~ 175 (408)
T d1t3ia_ 113 DEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESF--------------DLEHFKTLLS---EKTKLVTVVHISNT 175 (408)
T ss_dssp CEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSB--------------CHHHHHHHCC---TTEEEEEEESBCTT
T ss_pred CEEEeecccchhhhhhhhhhhhccCceEeeeeccccccc--------------cHHHhhhccC---CCceEEEEeccccc
Confidence 888888888887766554332 343444333222222 6788877765 58999999999999
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchh--hhhhhccCCcccccccccHHHHHHh
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMV 272 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~ 272 (411)
+|.+.| +++|.++|+++|+++++|.+|+ .|. ...+..+ .+|++ +.-|++++ --+|+++.+++.....
T Consensus 176 tG~~~p----~~~i~~~~~~~g~~~ivDa~q~---~g~~~id~~~~--~~D~~~~s~hK~~gp-~G~g~l~v~~~~~~~~ 245 (408)
T d1t3ia_ 176 LGCVNP----AEEIAQLAHQAGAKVLVDACQS---APHYPLDVQLI--DCDWLVASGHKMCAP-TGIGFLYGKEEILEAM 245 (408)
T ss_dssp TCBBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHH--TCSEEEEEGGGTTSC-TTCEEEEECHHHHHHS
T ss_pred ccccCc----HHHHhhhhhccCceeeecccee---ccccccccccc--CCceEEeccccccCC-CCccccccchhhhhcC
Confidence 999999 9999999999999999999997 231 1222233 34654 56698642 2278888998887765
Q ss_pred cCCCCccc------------------ccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 273 APAGPMYQ------------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 273 ~~~~~~~~------------------~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
.+...... .-+-+.+..+.++..++++.+.+ +++.++..++.+++.+.+++. +..
T Consensus 246 ~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~----~~~ 321 (408)
T d1t3ia_ 246 PPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI----PQL 321 (408)
T ss_dssp CCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC----TTE
T ss_pred CceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccC----ccc
Confidence 43211100 01224466666666777776654 444555555555555555443 432
Q ss_pred eEE------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------------cceee--ecC
Q 015230 332 ICG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFT--SLA 391 (411)
Q Consensus 332 ~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------------~~~~~--~~~ 391 (411)
... ...+.++.|.+... +...+.+.|.++||.++.+.. ..+|+ ...
T Consensus 322 ~~~~~~~~~~~~~~iv~f~~~~~--------------~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~y 387 (408)
T d1t3ia_ 322 RLYGPNPKHGDRAALASFNVAGL--------------HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFY 387 (408)
T ss_dssp EEESCCGGGSCBCSEEEEEETTB--------------CHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTT
T ss_pred cccCCCccccCcceEEEEEeCCC--------------CHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCC
Confidence 221 11245566655321 135778888899999986532 24677 467
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
.|++|+|++++.|+++++-
T Consensus 388 nt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 388 NTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999874
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=5.1e-20 Score=166.43 Aligned_cols=322 Identities=13% Similarity=0.007 Sum_probs=167.3
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeC
Q 015230 48 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 126 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~ 126 (411)
++.| .||++++|+.++........+.++..+++.+.+++.++ ..++|+||+||+||+..++.. ...+++.++....
T Consensus 8 ~~~g-~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~--~~~~~~~~~~~~~ 84 (340)
T d1svva_ 8 YSVG-MHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSL--ALRPWEAVIATQL 84 (340)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHH--HCCTTEEEEEETT
T ss_pred CCCC-CCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHH--Hhhhccccccccc
Confidence 3444 79999999998866532222357777899999999998 678999999999999999874 3445566666666
Q ss_pred CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc---CCCcEEEEEEcccCCCCCccCCCH
Q 015230 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKP 203 (411)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~vi~~~~~~~~G~~~~~~ 203 (411)
.++...................+..... +.+........ .......+++...++++|.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (340)
T d1svva_ 85 GHISTHETGAIEATGHKVVTAPCPDGKL--------------RVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTK- 149 (340)
T ss_dssp SHHHHSSTTHHHHTTCCEEEECCTTSCC--------------CHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCH-
T ss_pred cceeeeecccccccceeeeecccccccc--------------cchhHHHHhhhhhcccCCcceeeeecccccccccccH-
Confidence 6554433333333322111111111111 23333333332 22234445555555555655543
Q ss_pred HHHHHHHHHHHHhCCEEEEecccccc-ccc--cCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCCCcc
Q 015230 204 DFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMY 279 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~ 279 (411)
+.+..+.++|+++|.++++|+++.+. ... ............++.++++..+.+ ...++.............. ...
T Consensus 150 ~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 228 (340)
T d1svva_ 150 QELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL-IKQ 228 (340)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH-HHH
T ss_pred HHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhh-ccc
Confidence 33888999999999999999999743 211 111111110011122333333321 1222222222111111100 001
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhccc
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 359 (411)
...+......+.+++...++........++..++..++++.|+.+ +.....+..+.++++.+..
T Consensus 229 ~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~p~~~~~v~~~~~~------------ 292 (340)
T d1svva_ 229 RGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC----GIRLAWPSASNQLFPILEN------------ 292 (340)
T ss_dssp TTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCCSSSEECBEEEH------------
T ss_pred ccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC----CCeeecCCCceEEEEeCCH------------
Confidence 122333333333333332221111333444555555555555544 4332223345666665531
Q ss_pred chHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHH
Q 015230 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 360 ~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
....++.+.+...|+.+.+.+...+|+ ++.+|++|||+++++|++
T Consensus 293 --~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 293 --TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp --HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 122333333333355566666666887 578899999999999986
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.2e-19 Score=168.12 Aligned_cols=353 Identities=13% Similarity=0.023 Sum_probs=203.8
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHh
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
++.++|+.+.+++.+ ... ++..++..+....+-+....+|.+.+++.+ +.+.+++++||++|+..+++++..
T Consensus 40 ~~~~idl~sd~~t~~---~~~----~~~a~~~~gd~~Y~~~~~~~~le~~~a~l~-G~~~~~~~~sGt~A~~~a~~~~~~ 111 (467)
T d2v1pa1 40 EDVFIDLLTDSGTGA---VTQ----SMQAAMMRGDEAFSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_dssp GGCSEECSCCTTCSC---CCH----HHHHHTTSCCCCSSSCHHHHHHHHHHHHHT-CCSEEEEECSSTTTHHHHHHHHHH
T ss_pred cceeeeccccccchh---hHH----HHHhhccccchhhcCCchHHHHHHHHHHHH-CCCEEEECCCCHHHHHHHHHHHhh
Confidence 456788888754433 122 222232333222223555678888888888 677899999999999999987654
Q ss_pred c------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC-CCcEEEE
Q 015230 115 F------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAI 187 (411)
Q Consensus 115 ~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~~~~v 187 (411)
. .+....++..+.||+.+.......|..+..+..+...... .........|++++++.++.. +..++++
T Consensus 112 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~d~~~l~~~i~~~~~~~~~~i 187 (467)
T d2v1pa1 112 KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTG----VRYDFKGNFDLEGLERGIEEVGPNNVPYI 187 (467)
T ss_dssp HHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTT----SCCTTTTCBCHHHHHHHHHHHCGGGCCCE
T ss_pred ccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccccccccc----cccccccCCCHHHHHHHHhhcCcccccee
Confidence 3 3455567788888887777777777655443332111110 011112233899999999864 3568899
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc---ccccCccccccC---------CCcchhhhhhhcc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF---RLAYGGAQEYFG---------VTPDLTTLGKIIG 254 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~---~~g~~~~~~~~~---------~~~d~~~~sK~~~ 254 (411)
++++.++++|...++.+++++|+++|++||++||+|+++. |. ..+........+ ...|++|+|+..+
T Consensus 188 ~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~ 267 (467)
T d2v1pa1 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267 (467)
T ss_dssp EEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST
T ss_pred eecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCC
Confidence 9999999988888888999999999999999999999995 21 111111111111 1245556665444
Q ss_pred CCcccccc-cccHHH-HHHhc---CC-CCcccccCCCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 255 GGLPVGAY-GGRRDI-MEMVA---PA-GPMYQAGTLSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 255 ~G~~~g~~-~~~~~~-~~~~~---~~-~~~~~~~t~~~~-~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
.+.+.|++ ..+++. ..... .. .....+.+.... ..++++....+.....++..++..++.+++.++|++.
T Consensus 268 ~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 344 (467)
T d2v1pa1 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI--- 344 (467)
T ss_dssp TCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhc---
Confidence 33355544 444332 22111 00 001112233333 3333443444444444667778888889999999875
Q ss_pred cCCceEEeeecceEEEEEec--CCCCCcchhcccchHHHHHHHHHHHHcCeEeccC-----------------CCcceee
Q 015230 328 AGHAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-----------------QFEAGFT 388 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-----------------~~~~~~~ 388 (411)
+.... ...+....++... ..... .+........+.+.+.||..... ....+|+
T Consensus 345 -~~~v~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRl 416 (467)
T d2v1pa1 345 -GVVCQ-QAGGHAAFVDAGKLLPHIPA------DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416 (467)
T ss_dssp -TCCEE-EECSSCEEEEHHHHSTTSCG------GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred -CCccc-CCCccceeecchhhcCCcch------hhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEE
Confidence 32221 2223333333211 11100 11112234455666778754211 1122555
Q ss_pred --e-cCCCHHHHHHHHHHHHHHHHh
Q 015230 389 --S-LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 --~-~~~t~~~i~~~i~~l~~~~~~ 410 (411)
| ..+|++|||.++++|++++++
T Consensus 417 aip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 417 TIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3 456999999999999998753
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.80 E-value=3.1e-19 Score=165.62 Aligned_cols=263 Identities=11% Similarity=-0.013 Sum_probs=157.4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHh------ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeec
Q 015230 92 IEMVRFVNSGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 165 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~------~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (411)
..+|++++|++|++.+++..+.. ..++++||+..|.|......+ ...+.. ...+
T Consensus 123 ~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~-~~~~~~-------------------~~~~ 182 (425)
T d2hoxa1 123 DRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT-KYFDKK-------------------GYVW 182 (425)
T ss_dssp TCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH-HHSCBT-------------------TEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHH-HHcCCC-------------------CCcc
Confidence 45799999999999999975421 235678999888887533322 222221 1111
Q ss_pred CCCCHHHHHHHHHcCCCcEEE-EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC
Q 015230 166 PFNDVSALENLFENNKGEIAA-IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 243 (411)
Q Consensus 166 ~~~d~~~l~~~~~~~~~~~~~-vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~ 243 (411)
+. |.+.+++.++ +++++ ++++|+ |++|.+.. +..+++.+|.||+|.+. .+.-. ......
T Consensus 183 ~~-D~~~~~~~~~---~~~~ii~l~sPn-NPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~~~~---~~~~~~ 243 (425)
T d2hoxa1 183 AG-NAANYVNVSN---PEQYIEMVTSPN-NPEGLLRH-----------AVIKGCKSIYDMVYYWPHYTPIK---YKADED 243 (425)
T ss_dssp EE-EGGGGTTCSC---GGGEEEEEESSC-TTTCCCCC-----------CSSTTCEEEEECTTCSTTTSCCC---SCBCCS
T ss_pred CC-CHHHHHhhCC---CCceEEEEECCC-CCCcchhh-----------hhhhCCEEEEeccccCccccchh---hhcCCe
Confidence 11 5555554443 34455 555555 45555432 22368999999999633 11111 111222
Q ss_pred cchhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh--------c-CChHHHHHH
Q 015230 244 PDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--------E-PGTYEYLNK 312 (411)
Q Consensus 244 ~d~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~--------~-~~~~~~~~~ 312 (411)
.-+.||||.++ +|+|+||+++ ++.+++.+.. ....++.+.+.+++.++.++++... . .+..+..++
T Consensus 244 Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~---~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~ 320 (425)
T d2hoxa1 244 ILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFK 320 (425)
T ss_dssp EEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHH
T ss_pred EEEEeCHHhccCcchheeeEEeCCHHHHHHHHH---hhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 23458999999 8999999754 5667666652 2234467788888888888776421 1 233333333
Q ss_pred HHHHHHHHHHHHHHhcCC---------------ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeE
Q 015230 313 ITGELTQGIIDAGKKAGH---------------AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 377 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~---------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 377 (411)
..+.-+++|.+.....+. .......+.+.|+.+...+ .+.+.+.|+++||.
T Consensus 321 ~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~--------------~~~~~~lL~e~gI~ 386 (425)
T d2hoxa1 321 KLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE--------------DKDCYQTFQNGRIN 386 (425)
T ss_dssp HHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG--------------GCSHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh--------------HHHHHHHHHhCCEE
Confidence 333333333333322221 1123344556777664321 12356778899999
Q ss_pred eccCC-----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 378 FAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 378 v~~~~-----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.||. .+.+|+++..+++++++++++|++++++
T Consensus 387 v~pGs~FG~~~~yvRisl~~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 387 TQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp CEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred EEechhcCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99862 3468999999999999999999998863
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.9e-18 Score=160.36 Aligned_cols=316 Identities=10% Similarity=0.039 Sum_probs=195.9
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|+|++++....- .+.+ -..+..++..+.+.+.++ . ...|+|+.|||++++.++... ..+++++++....++
T Consensus 30 ~~~~Vl~am~~~~i--~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l--~~~~~~~~~~~~~~~ 105 (388)
T d1h0ca_ 30 LPPRIMAAGGLQMI--GSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV--LEPGDSFLVGANGIW 105 (388)
T ss_dssp CCHHHHHHHTCCCC--CTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH--CCSSCCEEECBSSHH
T ss_pred CCHHHHHHhCcCCC--CCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh--hccCCceeeecccce
Confidence 57888877642111 1110 114456777888888887 2 336899999999999999853 456777777777666
Q ss_pred CCchhhhhh-cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+........ .+........+..... |.+.+++.+... +++++.+..+++++|.+.| +++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~v~~~~~~n~tG~i~p----i~~ 165 (388)
T d1h0ca_ 106 GQRAVDIGERIGARVHPMTKDPGGHY--------------TLQEVEEGLAQH--KPVLLFLTHGESSTGVLQP----LDG 165 (388)
T ss_dssp HHHHHHHHHHHC--CBCCBCCTTCCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred eeeeccccccccccccccccCCcccc--------------chHHHHHHhccC--CcceEEEeeeeeccccccC----HHH
Confidence 543332222 2332222222222222 677777766643 5678888888899999999 999
Q ss_pred HHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCCCcc------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------ 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~------ 279 (411)
|.++|++||+++++|.+|+ .| ....++.+ ..|+. +..|++++..-+|+++.+++.++.+.......
T Consensus 166 i~~~~~~~g~~~~vD~~qs---~g~~~~d~~~~--~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d1h0ca_ 166 FGELCHRYKCLLLVDSVAS---LGGTPLYMDRQ--GIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD 240 (388)
T ss_dssp HHHHHHTTTCEEEEECTTT---TTTSCCCTTTT--TCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred HHHHhhcccccceeccccc---ccccccccccc--ccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccc
Confidence 9999999999999999997 22 12222233 34554 45588875223566777877776654311100
Q ss_pred --------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceE
Q 015230 280 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMF 341 (411)
Q Consensus 280 --------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~ 341 (411)
.....+.+..+..+..++++.+.+ +...++.+++..++++.++...... ...+. .....++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~-~~~~~~~rs~~i~ 319 (388)
T d1h0ca_ 241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQL-FVKDPALRLPTVT 319 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB-SSCSGGGBCTTEE
T ss_pred cchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCccc-ccCCHHHcCCeEE
Confidence 011224555666666677776554 4555666777777777776663211 11111 1123355
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeee---cCCCHHHHHHHHHHHHHHHHhC
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~---~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.|.++ +..+..++.+.|.++ ||.+..|. ...+|++ ..+|.+|+|+++++|+++++++
T Consensus 320 ~~~~p-------------~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l 384 (388)
T d1h0ca_ 320 TVAVP-------------AGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHC 384 (388)
T ss_dssp EEECC-------------TTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHS
T ss_pred EEECC-------------CCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 55552 223346787887666 99988763 2347875 4678999999999999999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.4e-17 Score=153.66 Aligned_cols=326 Identities=17% Similarity=0.175 Sum_probs=189.0
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCC--------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP--------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 106 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~--------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~ 106 (411)
|.|+|..++ +..++.+++++.+.++....+... .+..++..+.+++.++ .+++|+|++|+|+++.
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~ 75 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN 75 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence 346665443 236788999999999874322211 2223445667778887 7889999999999999
Q ss_pred HHHHHH-HhccCCcEEEEEeCCcCCCchhhhhh---cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 107 GVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 107 ~al~~~-~~~~~~~~vi~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
.++... .....++++++....+|......+.. .|..+..++......+ |++++++.++ +
T Consensus 76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~i--------------d~~~l~~~i~---~ 138 (376)
T d1eg5a_ 76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVV--------------KLEELEKLVD---E 138 (376)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCB--------------CHHHHHHHCC---T
T ss_pred hhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeE--------------CHHHHHHhcC---C
Confidence 988643 23445555666666666555544432 2444444433221111 7899988886 5
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh--CCEEEEeccccccccccCccccccCCCcc--hhhhhhhccC-Cc
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPD--LTTLGKIIGG-GL 257 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~~~g~~~~~~~~~~~~d--~~~~sK~~~~-G~ 257 (411)
++++|++..+++.+|.+.+ ++++.++|+++ ++++++|.+|+ .|. ...+.....+| +.+..|++++ |.
T Consensus 139 ~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~---~g~-~~~d~~~~~~D~~~~s~~K~~gp~G~ 210 (376)
T d1eg5a_ 139 DTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT---IGK-IPFSLEKLEVDYASFSAHKFHGPKGV 210 (376)
T ss_dssp TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT---TTT-SCCCCTTTCCSEEEEEGGGGTSCTTC
T ss_pred CceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec---ccc-ccccccccCccceecccceeecCCCc
Confidence 7899999999999999999 99999999776 89999999996 221 11222223345 4578899863 43
Q ss_pred ccccccccHHHHHHhcCCCC----cccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 258 PVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
|+++.+++. .+++... .........+........+..+.... ............++.+.|+.........
T Consensus 211 --~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (376)
T d1eg5a_ 211 --GITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITP 286 (376)
T ss_dssp --EEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSC
T ss_pred --eeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccccccccccc
Confidence 444444331 1221100 00111223344444444444433322 2333334444444444444331110000
Q ss_pred eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------------------cceee
Q 015230 332 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFT 388 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----------------------~~~~~ 388 (411)
..........+.+. ......+...|.++||.++.+.. +.+|+
T Consensus 287 -~~~~~~~~~~~~~~--------------~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRi 351 (376)
T d1eg5a_ 287 -LEISLPNTLSVSFP--------------NIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRI 351 (376)
T ss_dssp -TTSBCTTEEEEECT--------------TCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEE
T ss_pred -ccccccceeeeccC--------------CCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEE
Confidence 00111222222221 12236778888899999876531 12677
Q ss_pred e--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 S--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 ~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+ ..+|++|+|++++.|+++++-|
T Consensus 352 S~~~ynt~edid~l~~~L~~iv~~l 376 (376)
T d1eg5a_ 352 SLCKYNTEEEVDYFLKKIEEILSFL 376 (376)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHHHHhhC
Confidence 5 5569999999999999998754
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.77 E-value=1e-17 Score=156.17 Aligned_cols=330 Identities=12% Similarity=0.063 Sum_probs=202.2
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--------CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
++..|+|.. ..|..+..+.+++.+.+.+..... ...+..+++.+.+++.++ .+++++||.++|++
T Consensus 26 ~~~iYLd~a------s~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~ 99 (404)
T d1qz9a_ 26 EGVIYLDGN------SLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 99 (404)
T ss_dssp TTCEECCTT------TSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCCEEcCCc------ccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence 445566643 345567889999999887632111 123556788999999998 88999999999999
Q ss_pred HHHHHHHHH----hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 105 CMGVLRLAR----AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 105 ~~~al~~~~----~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+..++..+. ....++.+++.+..++........ .+..+...... .. ...+++.+++.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~--~~~~~~~~~~~i~-- 162 (404)
T d1qz9a_ 100 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAE-GLADMLQQGYT------------LR--LVDSPEELPQAID-- 162 (404)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHH-HHHHHHCSSCE------------EE--EESSGGGHHHHCS--
T ss_pred HHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHh-hhheeeeecee------------cc--ccccchhHHHhcC--
Confidence 988775332 223456677777666643222221 11111111000 00 0115566777665
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcc-
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLP- 258 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~- 258 (411)
+++++|.+..+++.+|.+.| +++|.++|+++++++++|.+|+ .| .....+.++.+..+.+..|++.+|-.
T Consensus 163 -~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~---~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~ 234 (404)
T d1qz9a_ 163 -QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS---AGAVPVDLHQAGADYAIGCTYKYLNGGPGS 234 (404)
T ss_dssp -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT---TTTSCCCHHHHTCSEEEECSSSTTCCCTTC
T ss_pred -CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc---ccccccccccccceEEEEechhhcccCCce
Confidence 57999999999999999999 9999999999999999999997 22 12223333443334566698865422
Q ss_pred cccccccHHHHHHhcCCCCcc--------------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHH
Q 015230 259 VGAYGGRRDIMEMVAPAGPMY--------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITG 315 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~--------------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~ 315 (411)
.|+++.+++..+.+....... .......+..+......+++.+.. +...++......
T Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 314 (404)
T d1qz9a_ 235 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 314 (404)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred EEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Confidence 456667766655443211100 011223455566666666665554 333344445555
Q ss_pred HHHHHHHHHHHhcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeec-
Q 015230 316 ELTQGIIDAGKKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL- 390 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~- 390 (411)
.+.+.++.+....++.. +....+.++.|.+. + ...+.+.|.++||++.......+|+++
T Consensus 315 ~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~-------------~---~~~v~~~L~~~gi~~~~r~~~~lRiS~~ 378 (404)
T d1qz9a_ 315 LFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-------------E---GYAVIQALIDRGVIGDYREPRIMRFGFT 378 (404)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-------------T---HHHHHHHHHTTTEECEEETTTEEEEECC
T ss_pred HHHHHHHhhccCCCEEEECCCCccceeeEEEEecC-------------C---HHHHHHHHHHCCCEEeecCCCeEEEECC
Confidence 55444444433222211 11223556666542 1 367889999999987543334688863
Q ss_pred --CCCHHHHHHHHHHHHHHHHh
Q 015230 391 --AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 --~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.|++||+++++.|++++++
T Consensus 379 h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 379 PLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 57999999999999999875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.74 E-value=2.4e-17 Score=155.16 Aligned_cols=294 Identities=11% Similarity=0.014 Sum_probs=173.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEeC-ChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCC
Q 015230 78 ENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVP 155 (411)
Q Consensus 78 ~~~l~~~l~~~~~~~~~v~~~~-~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 155 (411)
..++..++.+.++......++. |+++++.+++.+.+...+++.||+... -|.....++...|.+...+.. +...
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~-~H~s~~k~~~~~g~~~~~v~~~~~~~--- 190 (434)
T d2z67a1 115 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA-SHKSPIKAVSFVGMNMRLVETVLDGD--- 190 (434)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHTTCEEEEECCEEETT---
T ss_pred HHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEecc-CCHHHHHHHHHhCCcceEEEeecCCC---
Confidence 3445566777777555555554 455555566655544556666665544 454555555566654444322 1111
Q ss_pred CCCCCceeecCCCCHHHHHHHHHcC--CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc
Q 015230 156 KGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232 (411)
Q Consensus 156 ~~~~~~~~~~~~~d~~~l~~~~~~~--~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g 232 (411)
... -|+++|++.++++ .+.+.+|+++..++.+|.+.+ +++|.++|++||+++++|++|.+. ...
T Consensus 191 ------~~~---~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~ 257 (434)
T d2z67a1 191 ------RVY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYY 257 (434)
T ss_dssp ------EEE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred ------ccC---CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhc
Confidence 011 1899999999863 235777888888888898888 999999999999999999999643 211
Q ss_pred cCccccccCCCcchh--hhhhhccCCccccccc-ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
............|++ +..|.++++...|++. .++..++.+... +.+.+...+...+.++...+.....++..++
T Consensus 258 ~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~ 334 (434)
T d2z67a1 258 LEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS---YPGRASATPVVNTLVSLLSMGSKNYLELVKN 334 (434)
T ss_dssp HHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTT---SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhh---cccccccchHHHHHHHHHHHHHhcchhHHHH
Confidence 101111112234544 5679998644455554 466677777632 2222333333333333333322222567788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC--------
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------- 381 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-------- 381 (411)
..++.++++++|+++....+...........+.+.+.. +..++...|.++||.....
T Consensus 335 ~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~---------------~~~~l~~~L~~~gI~g~~v~~~l~~~g 399 (434)
T d2z67a1 335 QKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS---------------DPVEIAAKLYNLRVTGPRGIKKTDHFG 399 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS---------------CHHHHHHHHHHTTEESCEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC---------------CHHHHHHHHHHcCCeeeehhhhccccC
Confidence 88999999999999865544322111112222222211 1257888999999865321
Q ss_pred -------CCcceee--ecCCCHHHHHHHHHHHHH
Q 015230 382 -------QFEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 382 -------~~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
..+.+++ +...|++|||+++++|++
T Consensus 400 ~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 400 NCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp HTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred eeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 0122444 456799999999999985
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=5.7e-16 Score=141.96 Aligned_cols=319 Identities=15% Similarity=0.131 Sum_probs=184.8
Q ss_pred CcHHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHhhCC-CCCE--EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCc
Q 015230 53 ADDQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP-SIEM--VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 128 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~-~~~~--v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~ 128 (411)
.+++|++|+.+..- ... .+..+..++..+.+++.++ ..+. +++++|||++++.++... ..+++++++....+
T Consensus 11 ~~~~V~~A~~~~~~--~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l--~~~~~~~~~~~~~~ 86 (361)
T d1m32a_ 11 TSRTVKEAMLFDSC--TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA--LGPQDKVLIVSNGA 86 (361)
T ss_dssp CCHHHHHTTCCCCC--TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS--CCTTCCEEEEESSH
T ss_pred CCHHHHHHhhhhcc--CCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHh--hhhccccceeeehh
Confidence 45667666532211 011 1124556788888888887 4444 788999999999998742 23455556655554
Q ss_pred CCCch-hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHH
Q 015230 129 HGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207 (411)
Q Consensus 129 ~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~ 207 (411)
++... ......+........+..... +.+..+.. .....+++++.+..+++.+|.+.| ++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~~~v~~~~~~~~tG~~~~----i~ 147 (361)
T d1m32a_ 87 YGARMVEMAGLMGIAHHAYDCGEVARP--------------DVQAIDAI-LNADPTISHIAMVHSETTTGMLNP----ID 147 (361)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCTTSCC--------------CHHHHHHH-HHHCTTCCEEEEESEETTTTEECC----HH
T ss_pred hhhhHHHHhhhhhcccccccccccCCc--------------cchhhHHH-HHhccCccceEEEeeecccccchh----hh
Confidence 43222 222233332222111111111 22222222 222357888999999999999999 99
Q ss_pred HHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhh--hhhccCCcccccccccHHHHHHhcCCCCcc------
Q 015230 208 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------ 279 (411)
Q Consensus 208 ~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~--sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~------ 279 (411)
+|.++|++||+++++|.+|+ .|.. .++......|+.++ .|+++|..-+|+++.+++..+...+.....
T Consensus 148 ~i~~~~~~~g~~~~vDa~qs---~G~~-~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (361)
T d1m32a_ 148 EVGALAHRYGKTYIVDAMSS---FGGI-PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYA 223 (361)
T ss_dssp HHHHHHHHHTCEEEEECTTT---TTTS-CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHH
T ss_pred hhhhhhcccceeeEeecccc---cCcc-cccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchh
Confidence 99999999999999999997 2211 12222334576654 488875222778888888877665322110
Q ss_pred ---------cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce--EEe-eecceEEEEEec
Q 015230 280 ---------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGG-YISGMFGFFFTE 347 (411)
Q Consensus 280 ---------~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~-~~g~~~~~~~~~ 347 (411)
.....+.+.....+...++.....+...+...++.+...+.+.+.....+... ... ....++.+.+..
T Consensus 224 ~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~ 303 (361)
T d1m32a_ 224 QWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPE 303 (361)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCC
T ss_pred hhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCC
Confidence 11133556666666666666554443333443444444444444433333221 111 122344555432
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---Ccceeeec--CCCHHHHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSL--AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~~~--~~t~~~i~~~i~~l~~~~~ 409 (411)
. ......++.+.|.++||.+.++. .+.+|++. ..+++|+++++++|+++|.
T Consensus 304 ~-----------~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~ 359 (361)
T d1m32a_ 304 D-----------PQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY 359 (361)
T ss_dssp C-----------TTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred C-----------CCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 1 11223678999999999997753 23478852 5799999999999999874
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=3e-16 Score=148.00 Aligned_cols=307 Identities=11% Similarity=0.017 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHH-HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCC
Q 015230 77 LENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSP 152 (411)
Q Consensus 77 ~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~-~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 152 (411)
++.++.+++.+.++ ......++++|+++...++.++ +....+.++|+.+...|.....++...|.+...+.. +...
T Consensus 95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~ 174 (445)
T d3bc8a1 95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174 (445)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCc
Confidence 55677888888886 3467788888887666555443 333334444445555576666666666765444322 1111
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 230 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~ 230 (411)
. ..+ |++++++++++. .+++.+|++..+++.+|.+.+ +++|.++|++||+++++|++|++. .
T Consensus 175 ~---------~~i---d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~ 238 (445)
T d3bc8a1 175 E---------LRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSS 238 (445)
T ss_dssp E---------EEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred c---------ccc---CHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhh
Confidence 1 111 899999999864 346888888888888899888 999999999999999999999743 1
Q ss_pred c-ccC--ccccccCCCcchhhhhhhccCCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 231 L-AYG--GAQEYFGVTPDLTTLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 231 ~-g~~--~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
. ... .....-+++.-..+..|.++++.-.|+++. ++...+.+.. .+.+.....+.+.+.+....+..-...+.
T Consensus 239 ~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 315 (445)
T d3bc8a1 239 KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGRASASPSLDVLITLLSLGCSGYRKL 315 (445)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSCBCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHH---HHhhcccCcchHHHHHHHHHHhhhcchhh
Confidence 1 111 111111222223456798886444566644 4556665542 11222222222333333322221111556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCce-EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEecc----C
Q 015230 307 YEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----S 381 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~ 381 (411)
.++..++.+++.++|+++...++... .........++.+..... ....+..++...|.+.||-... .
T Consensus 316 ~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~--------~~~~~~~~l~~~L~~~gI~~~~~~~~~ 387 (445)
T d3bc8a1 316 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG--------HHDKAVTQLGSMLFTRQVSGARAVPLG 387 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS--------SSSCHHHHHHHHHHHTTCCSCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc--------cCCCCHHHHHHHHHHcCCCcceeeccc
Confidence 66778888899999988866555322 222223333443322111 1223446778888888873221 1
Q ss_pred -------------C-------Ccceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 382 -------------Q-------FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 382 -------------~-------~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+ .+.+++ +..+|++|||.+++.|++++++
T Consensus 388 ~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~ 438 (445)
T d3bc8a1 388 NVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 438 (445)
T ss_dssp CEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence 0 011344 4567999999999999999876
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.68 E-value=5.3e-16 Score=145.59 Aligned_cols=347 Identities=13% Similarity=0.007 Sum_probs=186.0
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
...++|+.+-.++.. .. +++..++..+. .|+ -+....+|.+.+++.+ +.+++++++||+.|+..+++
T Consensus 41 ~~v~iDl~sDs~t~a---m~----~~~~aa~~~GDd~Y~-~dpt~~~lE~~~a~l~-G~e~al~~~SGt~An~~a~~--- 108 (456)
T d1c7ga_ 41 KDIYIDLLTDSGTNA---MS----DKQWAGMMIGDEAYA-GSENFYHLEKTVKELF-GFKHIVPTHQGRGAENLLSQ--- 108 (456)
T ss_dssp GGCSEECSCSSSCCC---EE----HHHHHHTTSCCCCSS-SCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHH---
T ss_pred cceeeEcccCCCccc---ch----HHHHHHHhccchhcc-CCchHHHHHHHHHHHh-CCCeEEECCCHHHHHHHHHH---
Confidence 346789888643221 22 23333333432 333 3455566777777776 78899999999999999998
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC-CCCHHHHHHHHHcC-CCcEEEEEEcc
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENN-KGEIAAIILEP 191 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~-~~~~~~vi~~~ 191 (411)
.+.+++++|+.+..|+... ......|.............. .....+. ..|++.+++.++.+ ++.+++++++.
T Consensus 109 ~l~~~Gd~Vi~~~~f~~~~-~~i~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~ 182 (456)
T d1c7ga_ 109 LAIKPGQYVAGNMYFTTTR-FHQEKNGATFVDIVRDEAHDA-----SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAV 182 (456)
T ss_dssp HHCCTTEEEEESSCCHHHH-HHHHHTTEEEEECBCGGGGCT-----TCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred HhcCCCCeEecCcchHHHH-HHHHHcCceeeeccccccccc-----cccCCccccCCHHHHHHHhhhcCCccceeEEeee
Confidence 4456666665554444322 222233322111111000000 0000000 11899999999874 35678888888
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-c---c-cc-ccCc-ccccc------CCCcchh--hhhhhccCC
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F-RL-AYGG-AQEYF------GVTPDLT--TLGKIIGGG 256 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g---~-~~-g~~~-~~~~~------~~~~d~~--~~sK~~~~G 256 (411)
.+|.+|....+.+.+++|.++|++||++++.|+++. | + .. ...+ ..... .-..|++ |++|.+++
T Consensus 183 ~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~- 261 (456)
T d1c7ga_ 183 TVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLV- 261 (456)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC-
T ss_pred cccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccc-
Confidence 888877777778889999999999999999999985 1 1 10 0000 00000 0012443 56677764
Q ss_pred ccc-cccccc-HHHHHHhcCCCCcc-cccCC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 257 LPV-GAYGGR-RDIMEMVAPAGPMY-QAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 257 ~~~-g~~~~~-~~~~~~~~~~~~~~-~~~t~-~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+. |+++++ +.+++..+...... ...+. ..+...+.+....+.....++..++..++.+++.++|++. +...
T Consensus 262 -~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~----g~~v 336 (456)
T d1c7ga_ 262 -NIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA----GVPI 336 (456)
T ss_dssp -SSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT----TCCB
T ss_pred -cceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc----cCCc
Confidence 34 455544 55555543211111 11122 2233333333333443333445566667778888888876 3222
Q ss_pred EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----------------cceeee---cCC
Q 015230 333 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------EAGFTS---LAH 392 (411)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----------------~~~~~~---~~~ 392 (411)
.....+..+.++...... .+. .........+.+.+.+.||...+.+. ..+|++ ...
T Consensus 337 v~p~g~~~v~vda~~~~~-~i~---~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~ 412 (456)
T d1c7ga_ 337 VEPTGGHAVFLDARRFCP-HLT---QDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVY 412 (456)
T ss_dssp CSSCCSSEEEEEHHHHCT-TSC---GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSC
T ss_pred ccCCCCcceeEechhhcc-CCC---cccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccC
Confidence 223345555555432100 000 01111223445555677887543210 115653 345
Q ss_pred CHHHHHHHHHHHHHHHH
Q 015230 393 SSDDIQHTITAAEKVLR 409 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~ 409 (411)
|++++|.+++.|+++.+
T Consensus 413 T~e~iD~Vae~i~~v~~ 429 (456)
T d1c7ga_ 413 TYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999998875
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.68 E-value=8.2e-16 Score=141.73 Aligned_cols=316 Identities=15% Similarity=0.108 Sum_probs=182.2
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+++|++|+.... ..+.+ -..+..++..+.+++.++ +...|+|+.||+++++.++.. ...+++++++....++
T Consensus 29 v~~~Vl~am~~~~--~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~--~~~~~~~~~~~~~~~~ 104 (377)
T d1vjoa_ 29 AHPSVLQAMNVSP--VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN--AVEPGDVVLIGVAGYF 104 (377)
T ss_dssp CCHHHHHHHSSCC--CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH--HCCTTCEEEEEESSHH
T ss_pred CCHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHh--ccccccccceeeechh
Confidence 5788887763221 11111 124556777778888776 455888889999999999874 3455677777777666
Q ss_pred CCchhhhhhcCCCC-cccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+............. .....+..... +.+..+..... .++.++.+..+++++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~----i~~ 164 (377)
T d1vjoa_ 105 GNRLVDMAGRYGADVRTISKPWGEVF--------------SLEELRTALET--HRPAILALVHAETSTGARQP----LEG 164 (377)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTCCC--------------CHHHHHHHHHH--HCCSEEEEESEETTTTEECC----CTT
T ss_pred hhhhhhhhhhhcccccccccCCCCcc--------------cchhhhhhhhc--Ccceeeeeeeeeccceeeec----hhh
Confidence 54333333332221 11111111111 34444444443 25667777788888999999 999
Q ss_pred HHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcc--------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY-------- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~-------- 279 (411)
|.++|+++|+++++|.+|+ .| ....++.++.+..+.+..|+++|+--+|++..++..++.........
T Consensus 165 i~~~~~~~g~~~~vDa~~~---~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (377)
T d1vjoa_ 165 VGELCREFGTLLLVDTVTS---LGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMN 241 (377)
T ss_dssp HHHHHHHHTCEEEEECTTT---TTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH
T ss_pred hhhhhhhccceEEEecchh---hhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccc
Confidence 9999999999999999996 22 22233333333323455677765333666677777776554321110
Q ss_pred ---------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEec
Q 015230 280 ---------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347 (411)
Q Consensus 280 ---------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 347 (411)
.....+.+........++.+.... +...++.+++..++++.+.+........ .......++.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~rs~~v~~~~~p- 319 (377)
T d1vjoa_ 242 LLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE-KEYRLPTLTTVCIP- 319 (377)
T ss_dssp HHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-GGGBCSSEEEEECC-
T ss_pred hhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecC-hHhcCCeEEEEECC-
Confidence 111222333333333444443333 4445556666666666666542211111 11112334445442
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCC----cceeee---cCCCHHHHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTS---LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~---~~~t~~~i~~~i~~l~~~~~ 409 (411)
++.+..++.+.|.++ ||.+..+.. +.+|++ ...|.+++++++++|+++++
T Consensus 320 ------------~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 320 ------------DGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp ------------TTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ------------CCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 223347788877655 999876532 347885 34689999999999999874
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=4.1e-16 Score=143.73 Aligned_cols=311 Identities=13% Similarity=0.038 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
+++-++++.+.++.+.... ....+++.+++++.+ +.+.+++++|||.|+.++++.+ ...+++.||+...+|++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--G~~v~~~E~~la~~~-g~~~ai~~~sgt~Al~~al~al-~~~~gdeVi~~~~~~~~~~~ 86 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITT--GPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVSTLN 86 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSS--SHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCcC--CHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHh-CCCCCCEEEEeccccccccc
Confidence 4566788999999863322 344566667777766 6678999999999999999743 45677889998888886555
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
+.. ..|..+............ |++++++.+. +++++|++.+. .|...+ +++|.++|
T Consensus 87 ai~-~~g~~pv~~d~~~~~~~~-------------d~~~l~~~i~---~~tkaIi~~h~---~G~~~~----~~~i~~i~ 142 (376)
T d1mdoa_ 87 MIV-LLGANPVMVDVDRDTLMV-------------TPEHIEAAIT---PQTKAIIPVHY---AGAPAD----LDAIYALG 142 (376)
T ss_dssp HHH-HTTCEEEEECBCTTTCCB-------------CHHHHHHHCC---TTEEEECCBCG---GGCCCC----HHHHHHHH
T ss_pred chh-ccccceeeecccccccCC-------------CHHHHHHhcC---CCCeEEEEeCC---CCCccc----hhHHHHHH
Confidence 444 444433332221111111 8999999887 35788877543 466666 99999999
Q ss_pred HHhCCEEEEecccc-cccc-ccCccccccCCCcchhhh--hhhccCCcccccccc-cHHHHHHhcCCCC-----------
Q 015230 214 KENGALLIFDEVMT-GFRL-AYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGP----------- 277 (411)
Q Consensus 214 ~~~~~~li~De~~~-g~~~-g~~~~~~~~~~~~d~~~~--sK~~~~G~~~g~~~~-~~~~~~~~~~~~~----------- 277 (411)
++||++||.|++|+ |... +... ..++ ..+.|| +|.+++| -.|.+++ ++++.+.++....
T Consensus 143 ~~~~i~vIeD~a~a~g~~~~~~~~--g~~g--~~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~ 217 (376)
T d1mdoa_ 143 ERYGIPVIEDAAHATGTSYKGRHI--GARG--TAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQ 217 (376)
T ss_dssp HHHTCCBCEECTTCTTCEETTEET--TSSS--EEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-----
T ss_pred HhcCceEEeccchhccCeeCCeec--cccc--CccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCcccccccc
Confidence 99999999999997 2211 1110 0111 123344 4888743 2455554 4555554431000
Q ss_pred ----------cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeecceEEEEEe
Q 015230 278 ----------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFT 346 (411)
Q Consensus 278 ----------~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~ 346 (411)
...+..+..+.+.++.+...++.+ ++..++.+++..++.+.|+++.... ..............+...
T Consensus 218 ~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (376)
T d1mdoa_ 218 SGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRV 295 (376)
T ss_dssp ------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEEC
T ss_pred cccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhccccccccccccccccccccccccccc
Confidence 001224455667777766666544 4556677777777777777652110 000000111111122111
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------------------------cceeee--cCCCHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------------------EAGFTS--LAHSSDDIQH 399 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------------------------~~~~~~--~~~t~~~i~~ 399 (411)
... ......+++.+.|.++||-+++.-. ..+++| ...|++|+++
T Consensus 296 ~~~---------~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~ 366 (376)
T d1mdoa_ 296 DEA---------RCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDR 366 (376)
T ss_dssp CHH---------HHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHH
T ss_pred ccc---------cchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHH
Confidence 100 0000125789999999998764211 014554 4559999999
Q ss_pred HHHHHHHHH
Q 015230 400 TITAAEKVL 408 (411)
Q Consensus 400 ~i~~l~~~~ 408 (411)
+++.|++++
T Consensus 367 I~~~i~~i~ 375 (376)
T d1mdoa_ 367 VITALHQIA 375 (376)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=2e-15 Score=136.76 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...|.+.++++. +.+..+.++||..|+..++.. ....+++|++.+..|++.........
T Consensus 58 nPT~~~LE~~la~LE-g~~~a~~~~SGmaAi~~~l~~--l~~~Gd~vl~~~~~Yg~t~~l~~~~~--------------- 119 (392)
T d1gc0a_ 58 NPTLNLLEARMASLE-GGEAGLALASGMGAITSTLWT--LLRPGDEVLLGNTLYGCTFAFLHHGI--------------- 119 (392)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESSCCSHHHHHHHHTG---------------
T ss_pred ChHHHHHHHHHHHHh-CCcceeehhhHHHHHHHHHHh--hccCCCeeecccccchhhhhhhhhhh---------------
Confidence 555678888887777 566788889999999998864 34567899999999887544322111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
...+..+..++..|+++++++++ +++++|++|.+.|+...+.+ ++.|+++|+++|+++++|.+.+. +
T Consensus 120 -~~~Gi~~~~~d~~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at-----P 186 (392)
T d1gc0a_ 120 -GEFGVKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT-----P 186 (392)
T ss_dssp -GGGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH-----H
T ss_pred -ccCCcccccCCccCHHHHHHhCC---CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccC-----c
Confidence 11233456666678999998887 57899999999999999999 99999999999999999999971 1
Q ss_pred ccccccCCCcc--hhhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 235 GAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 235 ~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
.....+.+..| +.|.+|.++| | .-.|.++++++.++..+.. ..........+|..+......++-+ +-..++.
T Consensus 187 ~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~-~~~~~~G~~~~p~da~ll~rgl~TL--~lRm~~~ 263 (392)
T d1gc0a_ 187 YLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-GLKDMTGAVLSPHDAALLMRGIKTL--NLRMDRH 263 (392)
T ss_dssp HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHHHH
T ss_pred cccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHH-HHHHccCCcCChhhHHHHHhccccH--HHHHHHH
Confidence 22222233345 4589999997 4 4566778888776654310 0111113345677777766665533 3345667
Q ss_pred HHHHHHHHHHHHHH
Q 015230 311 NKITGELTQGIIDA 324 (411)
Q Consensus 311 ~~~~~~~~~~l~~~ 324 (411)
.+++..+.+.|++.
T Consensus 264 ~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 264 CANAQVLAEFLARQ 277 (392)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777664
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.66 E-value=2.3e-14 Score=134.68 Aligned_cols=303 Identities=12% Similarity=-0.022 Sum_probs=187.5
Q ss_pred CHHHHHHHHHHHhhCCCC----------CEEEEeCChHHHHHHHHHHHHhcc----------------CCcEEEEEeCCc
Q 015230 75 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGCY 128 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~----------~~v~~~~~g~~a~~~al~~~~~~~----------------~~~~vi~~~~~~ 128 (411)
+..+.++.+|+++.++-+ ..-++|+||++|+..+|..+|... .+..+++....-
T Consensus 112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~ 191 (476)
T d1js3a_ 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (476)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence 667889999999998632 256899999999999998876421 023456666666
Q ss_pred CCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHH
Q 015230 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDF 205 (411)
Q Consensus 129 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~ 205 (411)
|.....++...|.++..++....... |+++|++.+++. ...+.+|+.+.....+|.+.|
T Consensus 192 H~Si~ka~~~lGl~~~~v~~d~~~~m--------------d~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---- 253 (476)
T d1js3a_ 192 HSSVERAGLIGGVKLKAIPSDGKFAM--------------RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---- 253 (476)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred cHHHHHHHHhcCceEEEeccCCCCCc--------------CHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----
Confidence 76777777777877666655333222 899999999862 335677888888888999999
Q ss_pred HHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC-cchh--hhhhhccCCcccccccccH-HHH-HHhcCCCCc-
Q 015230 206 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT-PDLT--TLGKIIGGGLPVGAYGGRR-DIM-EMVAPAGPM- 278 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~-~d~~--~~sK~~~~G~~~g~~~~~~-~~~-~~~~~~~~~- 278 (411)
+++|.++|++|++++++|.+|.|+ ...........++. .|-+ ...|++...+..|.+..+. ... ..+......
T Consensus 254 l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~ 333 (476)
T d1js3a_ 254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYL 333 (476)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------
T ss_pred HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhh
Confidence 999999999999999999999877 33322111112332 3544 4679988655677775543 332 222110000
Q ss_pred -------------cccc---CCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceE
Q 015230 279 -------------YQAG---TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMF 341 (411)
Q Consensus 279 -------------~~~~---t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~ 341 (411)
...+ +-....+....+...+-.-.-++++++..++.+++.+.|++. +..... .+.-.++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~----~~fel~~~p~l~iV 409 (476)
T d1js3a_ 334 KHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----PRFEVCAEVTLGLV 409 (476)
T ss_dssp ------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTEEECSCCCSSEE
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC----CCeEEECCCceEEE
Confidence 0000 111122333333322211111556666777777777777665 322111 2223355
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHcC-eEeccC---CCcceee---ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~v~~~---~~~~~~~---~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.|.+.. .+...+++.+.+.+.| +++.+. +...+|+ +..+|+++++.+++.|+++.++|
T Consensus 410 ~Fr~~~------------~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 410 CFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEccC------------ChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 565532 2333467788888887 445443 2223554 46789999999999999987763
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.66 E-value=4.5e-15 Score=136.70 Aligned_cols=310 Identities=13% Similarity=0.089 Sum_probs=187.2
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 52 HADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
.-+.+..+++.+.|+.+..+.......+++.+++++.+ +..++++++|||.|+.+|++.+ ...++++||+...+|...
T Consensus 10 ~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~-g~~~~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a~ 87 (384)
T d1b9ha_ 10 QYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH-GAAHALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFISS 87 (384)
T ss_dssp CCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHH
T ss_pred CCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHc-CCCCCCEEEEeccccccc
Confidence 43456678999999986422222344566777777777 7778999999999999999743 456778899988888754
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
... ....|..+............ |++.+++.+. .++++|++.+.. |...+ +++|.+
T Consensus 88 ~~a-i~~~g~~p~~~d~~~~~~~~-------------d~~~~~~~i~---~~tk~i~~~~~~---g~~~d----~~~i~~ 143 (384)
T d1b9ha_ 88 SQA-AQRLGAVTVPVDVDAATYNL-------------DPEAVAAAVT---PRTKVIMPVHMA---GLMAD----MDALAK 143 (384)
T ss_dssp HHH-HHHTTCEEEEECBCTTTCCB-------------CHHHHHHHCC---TTEEEECCBCGG---GCCCC----HHHHHH
T ss_pred ccc-cccccccccccccccccccc-------------chhhhccccc---cccccccccccc---ccccc----cccchh
Confidence 443 44444433333322122211 8888888765 467787665544 44555 999999
Q ss_pred HHHHhCCEEEEecccc-cc-ccccCccccccCCCcch--hhh--hhhccCCcccccccc-cHHHHHHhcCC---------
Q 015230 212 ITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL--TTL--GKIIGGGLPVGAYGG-RRDIMEMVAPA--------- 275 (411)
Q Consensus 212 l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~--~~~--sK~~~~G~~~g~~~~-~~~~~~~~~~~--------- 275 (411)
+|++|+++||.|.+|+ |. ..|.. .|..-|+ .|| +|.+++| .-|++++ ++++.+.++..
T Consensus 144 ~~~~~~i~lieD~a~a~ga~~~g~~-----~g~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~ 217 (384)
T d1b9ha_ 144 ISADTGVPLLQDAAHAHGARWQGKR-----VGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPR 217 (384)
T ss_dssp HHHHHTCCBCEECTTCTTCEETTEE-----GGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCT
T ss_pred hhhhhhhhhhhhhceecccccCCEe-----cCcccccceeccccccccccc-ccchhhhhhHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999997 22 11211 1222233 333 6887743 3555654 45555444210
Q ss_pred -C----CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE------E-eeecceEEE
Q 015230 276 -G----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC------G-GYISGMFGF 343 (411)
Q Consensus 276 -~----~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~-~~~g~~~~~ 343 (411)
. ....+..+..+.+.++.+...|+.+ ++..++-+++.+++.+.|+++ +.... . .....+..+
T Consensus 218 ~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~----~~i~~~~~~~~~~~~~~~~~~~ 291 (384)
T d1b9ha_ 218 DDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSHYMAMF 291 (384)
T ss_dssp TCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCCSEEEE
T ss_pred ccccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcc----cccccccccccccccccccccc
Confidence 0 0112334566778777777666543 445556666667777776654 22111 0 111122223
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---------------------------------cceeeec
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------------EAGFTSL 390 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------------~~~~~~~ 390 (411)
.+.. .....-+++.+.|.++||-+.+... ..+++|.
T Consensus 292 ~~~~-----------~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~ 360 (384)
T d1b9ha_ 292 RIPG-----------LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH 360 (384)
T ss_dssp ECTT-----------CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred eecc-----------cccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccC
Confidence 2211 1223346799999999997754311 0145553
Q ss_pred --CCC-HHHHHHHHHHHHHHHHh
Q 015230 391 --AHS-SDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 --~~t-~~~i~~~i~~l~~~~~~ 410 (411)
..| ++|++..++.|++++.+
T Consensus 361 ~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 361 RVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 345 67999999999998864
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=6.4e-16 Score=142.76 Aligned_cols=292 Identities=11% Similarity=0.074 Sum_probs=174.8
Q ss_pred HHHHHHHHHhhCC-----CCCEEEEeCChHHHHHHHHHHHH-hccCCcEEEEEeCCcCCCchhhhhh-cCCCCcccC-CC
Q 015230 78 ENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLAR-AFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLG-LP 149 (411)
Q Consensus 78 ~~~l~~~l~~~~~-----~~~~v~~~~~g~~a~~~al~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~-~g~~~~~~~-~~ 149 (411)
..++.+.+.+.+. ..+.++||.|||++++.++.... ...+++++++...++++........ .+....... .+
T Consensus 38 ~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (382)
T d2bkwa1 38 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK 117 (382)
T ss_dssp HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccccC
Confidence 3445555555553 45679999999999999997542 2345688888888777654333332 233222221 12
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC--CEEEEecccc
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMT 227 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~--~~li~De~~~ 227 (411)
..... +.+.+++.+... +++++++..+.+++|...+ ++++.++|++++ +++++|.+++
T Consensus 118 ~~~~~--------------~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs 177 (382)
T d2bkwa1 118 IGESV--------------PLELITEKLSQN--SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS 177 (382)
T ss_dssp TTSCC--------------CHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT
T ss_pred CCCcc--------------chhHHHHHhhhc--cchheeeeecccccccccc----chhhhhhccccccceeeeeecccc
Confidence 11222 677787777643 5678888888889999999 999999998875 8999999997
Q ss_pred ccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCC-----C-c-----------------ccccC
Q 015230 228 GFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG-----P-M-----------------YQAGT 283 (411)
Q Consensus 228 g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~-----~-~-----------------~~~~t 283 (411)
.| ....++.++++.-+.+..|+++|..-+|+++.+++.++...+.. . . .....
T Consensus 178 ---~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (382)
T d2bkwa1 178 ---IGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYF 254 (382)
T ss_dssp ---TTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCS
T ss_pred ---cccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccc
Confidence 22 22333334443323456699964222788889988877654210 0 0 01123
Q ss_pred CCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe--eecceEEEEEecCCCCCcchhcc
Q 015230 284 LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFEDAKK 358 (411)
Q Consensus 284 ~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~ 358 (411)
.+++.....+..++++.+.+ ++..++.+++.+++++.+.+............ ....+..+..
T Consensus 255 ~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~------------- 321 (382)
T d2bkwa1 255 ATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV------------- 321 (382)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC-------------
T ss_pred cCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcC-------------
Confidence 46677777888888887765 33344455555666666544311111100000 0112233333
Q ss_pred cchHHHHHHHHHHHHcCeEeccCCC-----cceeee---cCCCHHHHHHHHHHHHHHH
Q 015230 359 SETTKFARFYRGMLEEGVYFAPSQF-----EAGFTS---LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 359 ~~~~~~~~~~~~l~~~Gi~v~~~~~-----~~~~~~---~~~t~~~i~~~i~~l~~~~ 408 (411)
++. ..+.+.|.++||.+..|.. ..+|+. ...++++++.+++.|+.+.
T Consensus 322 ~~~---~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 322 ADP---PDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp SCH---HHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 222 4677889999999998732 237875 3445666666666665443
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=1.1e-14 Score=131.83 Aligned_cols=313 Identities=19% Similarity=0.102 Sum_probs=191.0
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~ 130 (411)
.+++|++|+.+..-. +.+ ...+..++..+.+.+.++ ..+.++++.|||+++++++..+ ..+++++++...+.++
T Consensus 11 v~~~V~~am~~~~~~--hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl--~~~g~~vlv~~~G~f~ 86 (348)
T d1iuga_ 11 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFS 86 (348)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHH
T ss_pred CCHHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhc--ccccccceeecchHHH
Confidence 577888877543211 110 113445666677777776 4567889999999999999742 3456778888887665
Q ss_pred Cchhhhh-hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHH
Q 015230 131 HADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209 (411)
Q Consensus 131 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i 209 (411)
....... ..+..+.....+....+ +.++. . ..++..+++..+.+++|.+.+ +++|
T Consensus 87 ~~~~~~a~~~~~~~~~~~~~~g~~~--------------~~~~~----~--~~~~~~v~~~h~eTstG~~~~----i~~i 142 (348)
T d1iuga_ 87 ERFYEIALEAGLVVERLDYPYGDTP--------------RPEDV----A--KEGYAGLLLVHSETSTGALAD----LPAL 142 (348)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTCCC--------------CTTTS----C--CSSCSEEEEESEETTTTEECC----HHHH
T ss_pred HHHHHHHHhcCcccccccccCCCcc--------------ccccc----c--ccCCCeeEEEecchhhhhhcc----HHHH
Confidence 4333222 23333333322222221 11111 1 135567777787788899999 9999
Q ss_pred HHHHHHhC--CEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcc-------
Q 015230 210 RRITKENG--ALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------- 279 (411)
Q Consensus 210 ~~l~~~~~--~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~------- 279 (411)
.++|++|+ .++++|.+++ .| ....++.++++.-+.+..|+++|---+|+++.++++++.+.+....+
T Consensus 143 ~~~~~~~~~~~l~~vDavss---~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~ 219 (348)
T d1iuga_ 143 ARAFKEKNPEGLVGADMVTS---LLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELK 219 (348)
T ss_dssp HHHHHHHCTTCEEEEECTTT---BTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHH
T ss_pred HHHHHhhhccceeechhhhc---ccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhh
Confidence 99999985 7899999997 22 23445556654444567799963111788889999888765421110
Q ss_pred ----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee-cceEEEEEecCCCCCcc
Q 015230 280 ----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFE 354 (411)
Q Consensus 280 ----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~ 354 (411)
....++++.....+..++++.+.++ ..++ .++.+.....++++....++....... ..+..+.+
T Consensus 220 ~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~--------- 288 (348)
T d1iuga_ 220 AQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEH-LALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYL--------- 288 (348)
T ss_dssp HHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHH-HHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEEC---------
T ss_pred hhccCcccccccchHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEEC---------
Confidence 1124466667777777888876542 3222 233333344444443333332211111 12334444
Q ss_pred hhcccchHHHHHHHHHHHHcCeEeccCCC----cceeee--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 355 DAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTS--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
|++.+...+.+.|.++|+.+.+|.. ..+|+. -..+.++++++++.|+++++++
T Consensus 289 ----P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 289 ----PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp ----CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4444457889999999999988742 247884 3678999999999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.65 E-value=2.9e-15 Score=138.59 Aligned_cols=315 Identities=13% Similarity=0.120 Sum_probs=183.1
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|+|++|+.+..-. +.+ -..+..+++.+.|++.++ +.+.++++.|||+++++++..+ ..+++++++...+.+
T Consensus 28 ~~~~V~~Am~~~~~~--hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l--~~~~~~vl~~~~g~~ 103 (388)
T d2ch1a1 28 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 103 (388)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhCcCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh--ccccccccccccccc
Confidence 578888876332111 111 114456677777888776 3456777889999999999753 345667777766665
Q ss_pred CCchhhhhh-cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+........ .+.....+..+..... +.+..++..... +++++.+..+++++|...+ +++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~v~~~~~~t~tG~~~~----~~~ 163 (388)
T d2ch1a1 104 AERAVEMSERYGADVRTIEGPPDRPF--------------SLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 163 (388)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTSCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cccchhhhhhhccccccccccccccc--------------chhhhhhhhccC--Ccceeeeeecccccccccc----hhh
Confidence 543333222 2332222222222222 556666655532 5678888888888999999 889
Q ss_pred HHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhh--hhccCCcccccccccHHHHHHhcCCCCc-------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM------- 278 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~~~~~~~~~~~~~~------- 278 (411)
|.++|+++++++++|.+++ .| ....++. ...|++++| |++++.--+|+++.+++.++........
T Consensus 164 i~~~~~~~~~~~~vD~~ss---~g~~pid~~~--~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
T d2ch1a1 164 VGQICHQHDCLLIVDAVAS---LCGVPFYMDK--WEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 238 (388)
T ss_dssp HHHHHHHTTCEEEEECTTT---BTTBCCCTTT--TTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred hcchhccccceeeeeeeec---ccccccchhc--cCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCcccccccc
Confidence 9999999999999999997 22 2222333 344655544 6676422267777787776654421110
Q ss_pred -------------ccccCCCCCHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceE
Q 015230 279 -------------YQAGTLSGNPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMF 341 (411)
Q Consensus 279 -------------~~~~t~~~~~~~~a~~~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~ 341 (411)
......+.+.....+..++++.+..... ..+.++.....+..+...... ....+.. ....++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rs~~v~ 317 (388)
T d2ch1a1 239 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD-IFVKDPRHRLPTVT 317 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-BSSCSGGGBCTTEE
T ss_pred chhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccc-cccCCHHHhCCeEE
Confidence 0011235555666666666665544222 223333333333333333111 1111111 123455
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCCC----cceeee-c--CCCHHHHHHHHHHHHHHHHh
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTS-L--AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~-~--~~t~~~i~~~i~~l~~~~~~ 410 (411)
.|.++ ++.+..++.+.|.++ ||.+.+|.. ..+|++ + ..|.|+|++++++|+++|+.
T Consensus 318 ~~~~p-------------~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 318 GIMIP-------------KGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp EEECC-------------TTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEECC-------------CCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 66553 233346788888665 999988642 247885 3 45889999999999999875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.64 E-value=1.1e-14 Score=131.88 Aligned_cols=216 Identities=13% Similarity=0.094 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...|.+.++++. +.+..++++||..|+..++.. ....+++||+.+..|.+.........
T Consensus 62 nPT~~~LE~~la~LE-gg~~a~~~sSGmaAi~~~l~~--ll~~Gd~vi~~~~~Yg~t~~~~~~~l--------------- 123 (397)
T d1y4ia1 62 NPTTDALEKKLAVLE-RGEAGLATASGISAITTTLLT--LCQQGDHIVSASAIYGCTHAFLSHSM--------------- 123 (397)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESSSCHHHHHHHHTHH---------------
T ss_pred CHHHHHHHHHHHHHh-CCccceeehHHHHHHHHHHhh--ccCCCCeeeeecccccccchhhhccc---------------
Confidence 566788888888887 556778888999999888863 34677889998888876543332111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
...+..+..+...|.+.+++.++ +++++|++|.+.|+...+.+ +++|+++|+++|+++++|.+.+ .+
T Consensus 124 -~~~Gi~~~~vd~~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~a-----tP 190 (397)
T d1y4ia1 124 -PKFGINVRFVDAGKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFM-----SP 190 (397)
T ss_dssp -HHTTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-----CT
T ss_pred -CCCceEeeccCCCCHHHHHHhcC---CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCccc-----Cc
Confidence 11233556666678999998886 57999999999988999999 9999999999999999999986 22
Q ss_pred ccccccCCCcc--hhhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 235 GAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 235 ~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
+....+....| +.+++|.++| + .-.|.++++++.+...+-. ..........+|..+..+...++-+ +-..++.
T Consensus 191 ~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~-~~~~~~G~~l~p~~a~l~~rgl~TL--~lRm~~~ 267 (397)
T d1y4ia1 191 YCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-GLKDITGGCMSPFNAWLTLRGVKTL--GIRMERH 267 (397)
T ss_dssp TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-HHHHTTCCCCCHHHHHHHHHHHTTH--HHHHHHH
T ss_pred ccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHH-HHHhCcCCcCCHHHHHHHHcCcCcH--HHHHHHH
Confidence 22333333345 4589999997 4 4466668887776543210 1111113345677777766665433 3344667
Q ss_pred HHHHHHHHHHHHHH
Q 015230 311 NKITGELTQGIIDA 324 (411)
Q Consensus 311 ~~~~~~~~~~l~~~ 324 (411)
.+++..+.+.|++.
T Consensus 268 ~~nA~~lA~~L~~h 281 (397)
T d1y4ia1 268 CENALKIARFLEGH 281 (397)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777664
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=4.3e-15 Score=138.98 Aligned_cols=324 Identities=11% Similarity=-0.029 Sum_probs=196.9
Q ss_pred CcHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHhhCCCC------CEEEEeCChHHHHHHHHHHHHhc-------
Q 015230 53 ADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVPSI------EMVRFVNSGTEACMGVLRLARAF------- 115 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~~~------~~v~~~~~g~~a~~~al~~~~~~------- 115 (411)
.+|++.+.+.+.+.+... +....+.+.++.+++++.++-+ ..-.+|.|||+|+..++..++..
T Consensus 66 ~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~ 145 (450)
T d1pmma_ 66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 145 (450)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh
Confidence 678888888888777321 2223678899999999998621 12589999999999999877532
Q ss_pred ---cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 116 ---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 116 ---~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
.....+++. ...|.....++...|-+.+.++.....+.. |+++++++++ +++++|++...
T Consensus 146 ~g~~~~~~~~~~-~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~-------------d~~~L~~~i~---~~t~~Vv~t~g 208 (450)
T d1pmma_ 146 AGKPTDKPNLVC-GPVQICWHKFARYWDVELREIPMRPGQLFM-------------DPKRMIEACD---ENTIGVVPTFG 208 (450)
T ss_dssp HTCCCSCCEEEE-SSCCHHHHHHHHHTTCEEEECCCBTTBCSC-------------CHHHHHHHCC---TTEEEEECBBS
T ss_pred cCCCCCCceEEe-cccHHHHHHHHHHcCCCceEeeecCCCCcC-------------cHHHHHHHhh---hCceEEEeeee
Confidence 122345554 456777777777777766665543222221 8999999887 46788888888
Q ss_pred CCCCCccCCCHHHHHHHHHHH------HHhCCEEEEecccccc-c-cc-cCccccccCC-Ccchhhh--hhhccCCcccc
Q 015230 193 VGNSGFIAPKPDFLNAIRRIT------KENGALLIFDEVMTGF-R-LA-YGGAQEYFGV-TPDLTTL--GKIIGGGLPVG 260 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~------~~~~~~li~De~~~g~-~-~g-~~~~~~~~~~-~~d~~~~--sK~~~~G~~~g 260 (411)
++.+|.+.| +++|.++| +++|+++++|.++.|+ . .. ....+ ..++ ..|.+++ -|++.+...+|
T Consensus 209 tt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~-~~~~~~aDSi~~s~HK~~~~p~g~g 283 (450)
T d1pmma_ 209 VTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW-DFRLPRVKSISASGHKFGLAPLGCG 283 (450)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC-STTSTTEEEEEEETTTTTCCCSSCE
T ss_pred eccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhh-hhcccceeEeecChhhccCCCCCee
Confidence 888999988 77777765 5579999999999865 2 11 11100 1122 2555544 48777655588
Q ss_pred cccccHH-HHHHhcCCCCcccc-----cCC--CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 261 AYGGRRD-IMEMVAPAGPMYQA-----GTL--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 261 ~~~~~~~-~~~~~~~~~~~~~~-----~t~--~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
++..+.+ ...........+.+ .+. +-+..........+..+.. ++..++..++.+++.++|++. +
T Consensus 284 ~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~ 359 (450)
T d1pmma_ 284 WVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL----G 359 (450)
T ss_dssp EEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred EEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 8876533 22211111111110 111 2222233333333333322 566677788888888888765 3
Q ss_pred CceEE-ee---e-cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC-----CC--cceee--ecCCCHH
Q 015230 330 HAICG-GY---I-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-----QF--EAGFT--SLAHSSD 395 (411)
Q Consensus 330 ~~~~~-~~---~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-----~~--~~~~~--~~~~t~~ 395 (411)
..... .+ . -..+.|.+.+.... ..+...+.+.|.++|..+... .. ..+|+ ....|++
T Consensus 360 ~~el~~~~~p~~~l~~V~Fr~~~~~~~---------~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e 430 (450)
T d1pmma_ 360 PYEFICTGRPDEGIPAVCFKLKDGEDP---------GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMD 430 (450)
T ss_dssp CEEEEEECCTTTBSSEEEEEECTTCCC---------SSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred CeEEEeCCCCCCceEEEEEecCCcccC---------CCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHH
Confidence 22111 11 1 23566766543211 122357889999999776422 11 12444 4567999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++|++++.|++++++|
T Consensus 431 ~~d~lv~dl~~~v~~l 446 (450)
T d1pmma_ 431 FAELLLEDYKASLKYL 446 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988753
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.62 E-value=6.2e-15 Score=133.26 Aligned_cols=213 Identities=12% Similarity=0.120 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-.+.+.+.+++.. +.+..+.++||..|+.+++. ....+++|++....|.+........
T Consensus 48 nPt~~~le~~la~LE-~~~~a~~fsSGMaAisall~---ll~~Gd~vv~~~~~Yg~t~~l~~~~---------------- 107 (380)
T d1ibja_ 48 NPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQV---------------- 107 (380)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHT----------------
T ss_pred ChHHHHHHHHHHHHc-CCceEEehhhHHHHHHHHHH---hhCCCCEEEEEecccccccchhhhh----------------
Confidence 455677777777776 56778889999999864332 4556788888777766533221111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
....+..+..+...+.++++++++ +++++|++|...|+...+.+ +++|+++|+++|+++|+|.+.+. +
T Consensus 108 ~~~~gi~~~~~d~~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at-----P 175 (380)
T d1ibja_ 108 VPRSGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS-----P 175 (380)
T ss_dssp SGGGTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-----T
T ss_pred hccccccccccCcchHHHHHHHhc---cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeeccccc-----c
Confidence 111233455566668888888875 57999999999999999999 99999999999999999999862 2
Q ss_pred ccccccCCCcc--hhhhhhhccC-C-ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.....+.+..| +.|++|.++| | .-.|.++.+ +.+.+.+... ........+|..+......++-+ +-..++
T Consensus 176 ~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~---~~~~G~~l~p~~a~ll~rgl~Tl--~lRm~~ 250 (380)
T d1ibja_ 176 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL---QNSEGSGLAPFDCWLCLRGIKTM--ALRIEK 250 (380)
T ss_dssp TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH---HHHTTCBCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhh---ccccCCcCCHHHHHHHHhcchhh--hhhHHH
Confidence 22333333445 4589999997 4 345665554 5555655421 11112345667766666665433 344566
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDA 324 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~ 324 (411)
..+++..+.+.|++.
T Consensus 251 ~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 251 QQENARKIAMYLSSH 265 (380)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777777654
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.60 E-value=2.6e-14 Score=129.66 Aligned_cols=215 Identities=17% Similarity=0.133 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...|.++++++. +.+..+.++||..|+..++.. ....++.|++....|.+.........
T Consensus 66 nPt~~~LE~~la~LE-gg~~a~~~sSGMaAi~~~l~~--l~~~Gd~iv~~~~~Yg~t~~l~~~~~--------------- 127 (398)
T d1qgna_ 66 NPTTVVLEEKISALE-GAESTLLMASGMCASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETIL--------------- 127 (398)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHH--HSCSSCEEEEETTSCHHHHHHHHHTG---------------
T ss_pred ChHHHHHHHHHHHHh-CCceEEEecCcchHHHHHHhh--cccccccccccccccchhhhhhcccc---------------
Confidence 566778888888877 567888999999999998863 34567888888888876443322111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
...+..+..+...+.+..++.+.. +++++|++|...|+...+.+ +++|+++|+++|+++|+|.+.+ .+
T Consensus 128 -~~~gi~~~~~~~~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~a-----tP 195 (398)
T d1qgna_ 128 -PKMGITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFA-----TP 195 (398)
T ss_dssp -GGGTCEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-----CT
T ss_pred -cccccccccccccchhhhhhhhcc--ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceee-----cc
Confidence 111223344443455555544332 47899999999999999999 9999999999999999999986 22
Q ss_pred ccccccCCCcch--hhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 235 GAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 235 ~~~~~~~~~~d~--~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
..++.+.+..|+ -|++|.++| | .-.|.+..+++.++.+... ........+|..+......++-+ +-..++.
T Consensus 196 ~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~---~~~~G~~l~p~~a~ll~rgl~TL--~lRm~~~ 270 (398)
T d1qgna_ 196 LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL---HHILGGALNPNAAYLIIRGMKTL--HLRVQQQ 270 (398)
T ss_dssp TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHGGGH--HHHHHHH
T ss_pred ccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh---cccCCCcCCHHHHHHHHhcchHH--HHHHHHH
Confidence 333333444454 489999987 4 4466667788877766531 11113345677777666665433 3345667
Q ss_pred HHHHHHHHHHHHHH
Q 015230 311 NKITGELTQGIIDA 324 (411)
Q Consensus 311 ~~~~~~~~~~l~~~ 324 (411)
.+++..+.+.|++.
T Consensus 271 ~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 271 NSTALRMAEILEAH 284 (398)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777664
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.60 E-value=1.3e-13 Score=126.62 Aligned_cols=321 Identities=15% Similarity=0.068 Sum_probs=179.9
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhh
Q 015230 58 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 137 (411)
Q Consensus 58 ~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 137 (411)
++++.+.++++... ..-+..+++.+.+++.+ +...+++++|||.|+.+|++.+ ...+++.|++..-+|.........
T Consensus 4 ~~~~~~~l~~~~~~-~~G~~~~~fE~~~~~~~-~~~~~~~~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~~a~~~~~~~ 80 (374)
T d1o69a_ 4 LKYIEEVFKSNYIA-PLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIASVAPICY 80 (374)
T ss_dssp HHHHHHHHHHTTTS-CTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGGTHHHHH
T ss_pred HHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEeCCcchHhhHHHHhh
Confidence 57788888885321 11344556666666666 6678999999999999999754 566678899988888765444443
Q ss_pred hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC
Q 015230 138 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 217 (411)
Q Consensus 138 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~ 217 (411)
+ |..++.+........ ...+.+........+++++++.... |...+ +++|.++|+++|
T Consensus 81 ~-g~~pv~~Di~~~~~~--------------~~~~~~~~~~~~~~~~~aii~~~~~---G~~~d----~~~i~~~~~~~~ 138 (374)
T d1o69a_ 81 L-KAKPVFIDCDETYNI--------------DVDLLKLAIKECEKKPKALILTHLY---GNAAK----MDEIVEICKEND 138 (374)
T ss_dssp T-TCEEEEECBCTTSSB--------------CHHHHHHHHHHCSSCCCEEEEECGG---GCCCC----HHHHHHHHHHTT
T ss_pred c-cceeEeccccccccc--------------ccccccccchhcccccccccccccc---cchhh----hHHHHHHhhccC
Confidence 3 433333222111111 2222233223333456666665544 44555 999999999999
Q ss_pred CEEEEeccccccccccCccccccCCCcchhhh----hhhccCCcccccccc-cHHHHHHhcCC---C-C-------cccc
Q 015230 218 ALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL----GKIIGGGLPVGAYGG-RRDIMEMVAPA---G-P-------MYQA 281 (411)
Q Consensus 218 ~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~----sK~~~~G~~~g~~~~-~~~~~~~~~~~---~-~-------~~~~ 281 (411)
++||.|.+|+ .|..+.-...|-.-|+.++ +|.+++|- -|.+++ ++++++.+... . . ...+
T Consensus 139 i~vIED~a~a---~g~~~~~~~~G~~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G 214 (374)
T d1o69a_ 139 IVLIEDAAEA---LGSFYKNKALGTFGEFGVYSYNGNKIITTSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYG 214 (374)
T ss_dssp CEEEEECTTC---TTCEETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCC
T ss_pred cchhhhhhhh---hcceECCeecCCCCceEEEeccCcccccccc-ceeehhhhHHHHHhhccccccccccccccccccCC
Confidence 9999999997 1211111112223355443 48887321 355544 56676665311 0 0 1123
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC--CCC------c
Q 015230 282 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP--VYN------F 353 (411)
Q Consensus 282 ~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~------~ 353 (411)
..+..+.+.++.+...++.+ ++..++-+++.+++.+.|.+................+..+.+.... ... +
T Consensus 215 ~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (374)
T d1o69a_ 215 YNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINI 292 (374)
T ss_dssp CBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEEC
T ss_pred ccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccccccccccccc
Confidence 34567888888888777654 3445556666666666665542111111111111111122111100 000 0
Q ss_pred chhcccchHHHHHHHHHHHHcCeEeccCCCc------------------------ceeee--cCCCHHHHHHHHHHHHHH
Q 015230 354 EDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~------------------------~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
.............+.+.|.++||-+++.-.+ .+++| ...|++|++..++.|.++
T Consensus 293 ~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~ 372 (374)
T d1o69a_ 293 SQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKS 372 (374)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred chhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHH
Confidence 0000012234578999999999987653110 14555 456999999999999988
Q ss_pred HH
Q 015230 408 LR 409 (411)
Q Consensus 408 ~~ 409 (411)
++
T Consensus 373 lk 374 (374)
T d1o69a_ 373 IK 374 (374)
T ss_dssp HC
T ss_pred HC
Confidence 74
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=6e-14 Score=126.72 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...+.+.++++. +.+..+.++||..|+..++.. ....++.|++.+..|.+...........
T Consensus 49 nPt~~~le~~la~LE-gg~~a~~~sSGMaAi~~~l~~--l~~~gd~vv~~~~~yg~t~~~~~~~~~~------------- 112 (384)
T d1cs1a_ 49 NPTRDVVQRALAELE-GGAGAVLTNTGMSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKR------------- 112 (384)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEETTCCHHHHHHHHHHHTT-------------
T ss_pred CHHHHHHHHHHHHHh-CCCceEEecChHHHHHHHHhh--cccccceecccccccchhhhhhhhhhcc-------------
Confidence 555677777777776 567788889999999998863 3456777777777776543332222111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~ 234 (411)
.+..+..+...|.+.+++.+. +++++|++|++.|+...+.+ +++|+++|+++|+++|+|.+.+ .+
T Consensus 113 ---~g~~~~~~d~~d~~~~~~~~~---~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~a-----tP 177 (384)
T d1cs1a_ 113 ---GCYRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFL-----SP 177 (384)
T ss_dssp ---TSCEEEEECTTCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-----CT
T ss_pred ---cccccccccCCCHHHHHhhcc---ccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEecccc-----Cc
Confidence 122455566668999998887 46889999999999999999 9999999999999999999986 12
Q ss_pred ccccccCCCcc--hhhhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
+....+.+..| +-|.+|.++| | .-.|.++. ++.+.+.+... ........+|..+......++-+ .-..++
T Consensus 178 ~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~---~~~~G~~~~p~~a~ll~rgL~TL--~lRm~~ 252 (384)
T d1cs1a_ 178 ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW---ANNIGVTGGAFDSYLLLRGLRTL--VPRMEL 252 (384)
T ss_dssp TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH---HHHHTCBCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred ccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhh---hhhhhhccccccHHHHhhccchh--HHHHHH
Confidence 22222333345 4589999997 5 44665655 45554444311 11112345667666666555433 334466
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDA 324 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~ 324 (411)
..+++..+.+.|++.
T Consensus 253 ~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 253 AQRNAQAIVKYLQTQ 267 (384)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcccC
Confidence 677777777777654
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.57 E-value=8.3e-14 Score=131.62 Aligned_cols=322 Identities=11% Similarity=-0.045 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSP 152 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 152 (411)
+.....++.+.+++.+ +.++.+|+++|+++...++..+ ...+++.||+...++.........+.+.+..+.... +..
T Consensus 64 ~~~~i~eae~~~A~~~-ga~~a~f~~~Gtt~~n~a~i~a-~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~ 141 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVY-NADKTYFVLGGSSNANNTVTSA-LVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY 141 (462)
T ss_dssp TBTHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHHH-HCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTT
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEECCchHHHHHHHHHH-hcCCCCeEEecccchHHHHHHHHHHhcCCceeeecccccc
Confidence 3455667777777777 6789999988887776665433 344566666665555443344444555443332221 111
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHc------CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFEN------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~ 226 (411)
+... ... .+.-+.+.+++.+.+ ...++..+++...++..|.+.+ +++|.++|++||++|++|++|
T Consensus 142 g~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~ 212 (462)
T d1c4ka2 142 GFIG----GIY-DSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFDSAW 212 (462)
T ss_dssp CCEE----EEC-GGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEECTT
T ss_pred cccC----CCC-hHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEechh
Confidence 1100 000 000033333332221 1234455556666677899999 999999999999999999999
Q ss_pred c-ccccccCccc------cccCC--Ccchh--hhhhhccCCcccccc-cccHHHHHHhcCCC-------CcccccCCCCC
Q 015230 227 T-GFRLAYGGAQ------EYFGV--TPDLT--TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG-------PMYQAGTLSGN 287 (411)
Q Consensus 227 ~-g~~~g~~~~~------~~~~~--~~d~~--~~sK~~~~G~~~g~~-~~~~~~~~~~~~~~-------~~~~~~t~~~~ 287 (411)
. ++........ ...+. ..|++ |+.|.+++. ..|.+ ..+...+....... ......+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~-~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~ 291 (462)
T d1c4ka2 213 VGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPF 291 (462)
T ss_dssp CCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCC
T ss_pred hccccccCcCCcchhhccccccccCCccEEEEecCcccccc-cceEEEEeccccccccchhhhHHHHHHhhhhcccCCch
Confidence 6 3311111100 01111 23554 688999851 13333 23322221100000 00112244455
Q ss_pred HHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC-c-eEEeee-------------------------
Q 015230 288 PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH-A-ICGGYI------------------------- 337 (411)
Q Consensus 288 ~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~------------------------- 337 (411)
...++....+...+.. +++.++..++..+++++++++...+.. . ..+.+.
T Consensus 292 ~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (462)
T d1c4ka2 292 YPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKW 371 (462)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchh
Confidence 5555554455544432 566778888889999998876321100 0 000000
Q ss_pred -------cce-------EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHH
Q 015230 338 -------SGM-------FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTI 401 (411)
Q Consensus 338 -------g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i 401 (411)
... +.+.......... ..+ ..+..+..+.+.|.++||.+...+...+++ +..+|++++|+++
T Consensus 372 ~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g-~~~-~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li 449 (462)
T d1c4ka2 372 HAYEGYGDNQYYVDPNKFMLTTPGINPETG-DYE-DFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLI 449 (462)
T ss_dssp TCCTTCCTTCEEECTTEEEEECSSEETTTT-EEC-SSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHH
T ss_pred ccccccCccceecccceeEEecCCcccccc-chh-hcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHH
Confidence 000 1111111000000 000 011124678899999999887666666665 5677999999999
Q ss_pred HHHHHHHH
Q 015230 402 TAAEKVLR 409 (411)
Q Consensus 402 ~~l~~~~~ 409 (411)
++|.++-+
T Consensus 450 ~aL~ei~r 457 (462)
T d1c4ka2 450 TQLLQLQR 457 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.55 E-value=4.9e-14 Score=125.43 Aligned_cols=210 Identities=12% Similarity=0.066 Sum_probs=138.5
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
|.+.+++.. +.+..+.++||..|+..++.. ....+++|++....|.+......... ...+.
T Consensus 3 LE~~la~Le-g~~~a~~~sSGMaAi~~~l~~--ll~~Gd~iv~~~~~Yg~t~~~~~~~l----------------~~~gi 63 (331)
T d1pffa_ 3 LEGKIAKLE-HAEACAATASGMGAIAASVWT--FLKAGDHLISDDCLYGCTHALFEHQL----------------RKFGV 63 (331)
T ss_dssp HHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESCCCHHHHHHHHTHH----------------HHTTC
T ss_pred HHHHHHHHh-CCCeEEEECCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHH----------------HhcCe
Confidence 444555554 667888889999999888853 34567788888888876443322111 11233
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH-HHhCCEEEEeccccccccccCccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGFRLAYGGAQEY 239 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~-~~~~~~li~De~~~g~~~g~~~~~~~ 239 (411)
++..++..|.+.++++++ +++++|++|...|+...+.+ ++++.+++ +++|+++|+|.+.+.. ...+.
T Consensus 64 ~~~~~d~~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp-----~~~~p 131 (331)
T d1pffa_ 64 EVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-----ILTNP 131 (331)
T ss_dssp EEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-----HHCCG
T ss_pred EEEEecccchhhHhhhcc---cccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc-----ccccc
Confidence 456666668888887775 57899999998888888888 99888885 6789999999999722 22222
Q ss_pred cCCCcc--hhhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015230 240 FGVTPD--LTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 315 (411)
Q Consensus 240 ~~~~~d--~~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~ 315 (411)
+.+..| +.|.+|.++| | .-.|.++.+++........ ......-...+|..+......++-+ +-..++..+++.
T Consensus 132 l~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~-~~~~~~G~~l~p~~a~ll~rgl~Tl--~~Rm~~~~~nA~ 208 (331)
T d1pffa_ 132 LDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-GIKDITGAIISPHDAWLITRGTLTL--DMRVKRAAENAQ 208 (331)
T ss_dssp GGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred cccCCCEEEecchhhcCCCCccccccccccccchhhhhhh-hhhhccCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 233345 4489999997 5 4466677776665443211 0111113345677777777777654 334567777777
Q ss_pred HHHHHHHHH
Q 015230 316 ELTQGIIDA 324 (411)
Q Consensus 316 ~~~~~l~~~ 324 (411)
.+.+.|++.
T Consensus 209 ~lA~~L~~h 217 (331)
T d1pffa_ 209 KVAEFLHEH 217 (331)
T ss_dssp HHHHHHHHC
T ss_pred HHHHhhhhC
Confidence 777777765
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.54 E-value=7.8e-14 Score=127.85 Aligned_cols=307 Identities=14% Similarity=0.094 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccC-CcEEEEEeCCcCCCch
Q 015230 55 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHAD 133 (411)
Q Consensus 55 ~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~-~~~vi~~~~~~~~~~~ 133 (411)
++-++++.+.++.+... ..+..+++.+++++.+ +.+++++++|||.|+.++++......+ ++.||+..-+|.+..
T Consensus 12 ~~~~~~v~~~l~~~~~~--~G~~v~~fE~~~~~~~-g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~- 87 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT--QGKRSLLFEEALCEFL-GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATA- 87 (371)
T ss_dssp HHHHHHHHHHHTSSCCS--SSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHH-
T ss_pred HHHHHHHHHHHcCCCcc--CCHHHHHHHHHHHHHH-CcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccc-
Confidence 55678899999885432 2344566666666666 667899999999999999985322222 346888776766433
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
.+....|..+........... +.+++++.+. .++++|++.+.. |...+ +++|.++|
T Consensus 88 ~ai~~~G~~pv~vDi~~~~~~--------------~~~~~~~~~~---~~t~avi~vh~~---G~~~~----~~~i~~~~ 143 (371)
T d2fnua1 88 NMLLESGYTPVFAGIKNDGNI--------------DELALEKLIN---ERTKAIVSVDYA---GKSVE----VESVQKLC 143 (371)
T ss_dssp HHHHHTTCEEEECCBCTTSSB--------------CGGGSGGGCC---TTEEEEEEECGG---GCCCC----HHHHHHHH
T ss_pred eeeeccCcccccccccccccc--------------cchhhhhhcc---chhhcccccccc---ccccc----cccccccc
Confidence 334445554444332211111 3344444443 577777766544 55666 99999999
Q ss_pred HHhCCEEEEeccccccccccCccccccCCCcchh--hh--hhhccCCcccccccc-cHHHHHHhcCCCC-----------
Q 015230 214 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGP----------- 277 (411)
Q Consensus 214 ~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~--sK~~~~G~~~g~~~~-~~~~~~~~~~~~~----------- 277 (411)
++++++||.|.+|+ .|..+.-...|...|+. || +|.+++|- -|.+++ ++++.+.++....
T Consensus 144 ~~~~i~lIEDaaqa---~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (371)
T d2fnua1 144 KKHSLSFLSDSSHA---LGSEYQNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEG 219 (371)
T ss_dssp HHHTCEEEEECTTC---TTCEETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCE
T ss_pred cccchhhccchhhc---cCceeccccCCcccccccccccccccccccc-ceEEEeechhhhhhccccccccccccccccc
Confidence 99999999999997 22111111222233443 33 58887432 456655 4566666542110
Q ss_pred --cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE------eeecceEEEEEecCC
Q 015230 278 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEGP 349 (411)
Q Consensus 278 --~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~g~~~~~~~~~~~ 349 (411)
...+..+..+.+.++.+...++.+ ++..++-+++..++.+.|++. +..... ......+.+.+.+.
T Consensus 220 ~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~- 292 (371)
T d2fnua1 220 EVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNHLYPILMHQK- 292 (371)
T ss_dssp EESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCSCEEEEECGG-
T ss_pred ccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhccccccc----cccccccccccccccccccccccccc-
Confidence 011345567778888777766544 334444555555555555442 322211 11122233333221
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc-------------------------ceeee--cCCCHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTIT 402 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-------------------------~~~~~--~~~t~~~i~~~i~ 402 (411)
.....+++.+.|.++||-+.+.-.+ .+.+| ...|++|++..++
T Consensus 293 ----------~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~ 362 (371)
T d2fnua1 293 ----------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAH 362 (371)
T ss_dssp ----------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHH
Confidence 1112367899999999988653111 14554 4559999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
.|.+.++.
T Consensus 363 ~i~~~~~~ 370 (371)
T d2fnua1 363 SVLKTFES 370 (371)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=8.5e-14 Score=126.33 Aligned_cols=214 Identities=10% Similarity=-0.003 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...+.+.+++.. +.+.++.++||..|+..++.. ....++.|++....|.+.........
T Consensus 57 nPt~~~le~~la~LE-g~~~a~~~~SGMaAi~~~l~~--l~~~Gd~iv~~~~~Yg~T~~l~~~~l--------------- 118 (391)
T d1cl1a_ 57 TLTHFSLQQAMCELE-GGAGCVLFPCGAAAVANSILA--FIEQGDHVLMTNTAYEPSQDFCSKIL--------------- 118 (391)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEETTSCHHHHHHHHHTG---------------
T ss_pred ChhHHHHHHHHHHHh-CCccEEEeccccceeeehhhc--ccCCCCeEEEecccccchhhhhhhcc---------------
Confidence 566778888888877 567888899999999998864 34567788887777765433221111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh--CCEEEEeccccccccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLA 232 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~~~g 232 (411)
...+..+..+...|.+++++.++ +++++|++|...|+...+.+ +++|+++|+++ |+++++|.+.+
T Consensus 119 -~~~Gi~~~~~d~~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~a----- 185 (391)
T d1cl1a_ 119 -SKLGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA----- 185 (391)
T ss_dssp -GGGTCEEEEECTTCGGGGGGTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT-----
T ss_pred -cccccccccccCccccccccccc---cccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEecccc-----
Confidence 11223455555557777776655 57999999999998888888 99999999875 99999999997
Q ss_pred cCccccccCCCcc--hhhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 233 YGGAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 233 ~~~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
.+...+.+.+..| +.|.+|.++| | .-.|.++.+++..+.+..... .. ....+|..+......++-+ .-..+
T Consensus 186 tP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~-~~--G~~~~p~~a~ll~rgl~TL--~lR~~ 260 (391)
T d1cl1a_ 186 AGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY-LM--GQMVDADTAYITSRGLRTL--GVRLR 260 (391)
T ss_dssp TTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH-HT--TCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred chhhhcccccccceEEeecchhccccccccccceeccccccccchhhhh-cc--cccCCchhhhhhhccchhH--HHHHH
Confidence 2223333333445 4589999997 4 445666777766655542111 11 2234566666555554432 33446
Q ss_pred HHHHHHHHHHHHHHHH
Q 015230 309 YLNKITGELTQGIIDA 324 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~ 324 (411)
+..+++..+.+.|++.
T Consensus 261 ~~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 261 QHHESSLKVAEWLAEH 276 (391)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6667777777777654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.50 E-value=5.1e-13 Score=121.26 Aligned_cols=216 Identities=12% Similarity=0.039 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...+.+.++++. +.+..+.++||..|+..++.. ...+++.|++.+..|.+.........
T Consensus 58 nPT~~~le~~la~LE-g~~~a~~~sSGmaAi~~~~l~--l~~~gd~vv~~~~~yg~t~~~~~~~~--------------- 119 (394)
T d1e5ea_ 58 NPTVSNLEGKIAFLE-KTEACVATSSGMGAIAATVLT--ILKAGDHLISDECLYGCTHALFEHAL--------------- 119 (394)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESCCCHHHHHHHHTHH---------------
T ss_pred CHHHHHHHHHHHHHh-CCcceeeeccchHHHHHHHHh--hcccccccccccceeehhhHhHHHHh---------------
Confidence 666778888888777 566778888999999988753 34456677666666655332221111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-hCCEEEEecccccccccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-~~~~li~De~~~g~~~g~ 233 (411)
...+..+..++..|.+++++.++ +++++|++|...|+...+.+ ++++.+++++ +|+++|+|.+.+ .
T Consensus 120 -~~~gi~~~~~d~~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~a-----t 186 (394)
T d1e5ea_ 120 -TKFGIQVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFC-----S 186 (394)
T ss_dssp -HHTTCEEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTT-----C
T ss_pred -hccceeeeccCCCCHHHHHHhhc---ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCccc-----C
Confidence 11233566666668888888886 57899999998888888888 9999887765 689999999986 2
Q ss_pred CccccccCCCcch--hhhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 234 GGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 234 ~~~~~~~~~~~d~--~~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
+..++.+.+..|+ .|.+|.++| | .-.|.++++++.+...+.. ..........+|..+......++-+ +-..++
T Consensus 187 P~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~-~~~~~~G~~lsp~~a~ll~rgl~TL--~lRm~r 263 (394)
T d1e5ea_ 187 PMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV-GIKDITGSVISPHDAWLITRGLSTL--NIRMKA 263 (394)
T ss_dssp TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred cccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHH-HHHHhhCCCCChHHHHHHHhhchhH--HHHHHH
Confidence 2233333334454 489999997 5 4566677787776654311 0111112345667666666655433 334566
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDA 324 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~ 324 (411)
..+++..+.+.|++.
T Consensus 264 ~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 264 ESENAMKVAEYLKSH 278 (394)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 777777777777765
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=3.1e-13 Score=122.51 Aligned_cols=211 Identities=13% Similarity=0.131 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-.+.+.+.++++. +.+..+.++||..|+..++. .+..+++|++....|.+..........+
T Consensus 54 nPT~~~lE~~la~LE-~~~~a~~~sSGmaAi~~~l~---~l~~gd~iv~~~~~yg~t~~~~~~~l~~------------- 116 (393)
T d1n8pa_ 54 NPNRENLERAVAALE-NAQYGLAFSSGSATTATILQ---SLPQGSHAVSIGDVYGGTHRYFTKVANA------------- 116 (393)
T ss_dssp CHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHH---TSCSSCEEEEESSCCHHHHHHHHHTSTT-------------
T ss_pred ChHHHHHHHHHHHHh-CCceEEEecCchhHHHhhhh---cccCCCeeeeeeeecccchhhhhhhhhc-------------
Confidence 555677888888777 56677888889988865544 4566788999888887644332221111
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHH----HhCCEEEEeccccccc
Q 015230 155 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFR 230 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~----~~~~~li~De~~~g~~ 230 (411)
.+..+..+. .+.+++++.++ +++++|++|.+.|+...+.+ +++|+++|+ ++|+++|+|.+.+.
T Consensus 117 ---~gi~~~~~~-~~~~~~~~~i~---~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~at-- 183 (393)
T d1n8pa_ 117 ---HGVETSFTN-DLLNDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS-- 183 (393)
T ss_dssp ---TCSCCEEES-SHHHHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH--
T ss_pred ---ccceeEEee-cchHHHHHHhh---hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccC--
Confidence 122333333 24577777765 58999999999999998988 999999999 67899999999862
Q ss_pred cccCccccccCCCcc--hhhhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCC
Q 015230 231 LAYGGAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305 (411)
Q Consensus 231 ~g~~~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~ 305 (411)
+...+.+.+..| +.|++|.++| | .-.|.++. ++++.+.+... ........+|..+......++-+ +-
T Consensus 184 ---P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~---~~~~G~~~~p~~a~ll~rgl~Tl--~l 255 (393)
T d1n8pa_ 184 ---PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL---QNAIGAIPSPFDAWLTHRGLKTL--HL 255 (393)
T ss_dssp ---HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHTTH--HH
T ss_pred ---cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHH---HhhcCCCCChHHHHHHHhCCcch--hh
Confidence 122222223345 4589999997 5 55666654 45566666421 11113345677766666665433 33
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015230 306 TYEYLNKITGELTQGIID 323 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~ 323 (411)
..++..+++..+.+.|+.
T Consensus 256 R~~~~~~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 256 RVRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 446666667677777753
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.44 E-value=1.1e-13 Score=126.47 Aligned_cols=315 Identities=11% Similarity=-0.022 Sum_probs=164.6
Q ss_pred CcHHHHHHHHHHHHcCCC-------CCC----CCHHHHHHHHHHHhhCCC--CCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 53 ADDQVLAALGETMKKGTS-------FGA----PCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-------~~~----~~~~~~~l~~~l~~~~~~--~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.+++|++++.+.+.+... .+. ..+..++..+.|++.++. ...++|++|++++...++... ...+++
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~-l~~~~~ 92 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMN-FLKEGQ 92 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHH-HCCTTC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-cccCCC
Confidence 678999999888755211 011 145567888888888873 337888777666655444322 334456
Q ss_pred EEEEEeCCcCCCchhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 120 RIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
++++......+...... ...|..+.....+..... +.+.+++.+.. .....+ .+.+|.
T Consensus 93 ~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~~--~~~~~v-----~~~tg~ 151 (361)
T d2c0ra1 93 TANYVMTGSWASKALKEAKLIGDTHVAASSEASNYM--------------TLPKLQEIQLQ--DNAAYL-----HLTSNE 151 (361)
T ss_dssp EEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTC--------------SCCCGGGCCCC--TTEEEE-----EEESEE
T ss_pred ceEEEeechhhhhhhhhhhhcCceeeeecccccccc--------------chhhhhhhccc--CcceEE-----EEeccc
Confidence 66666654443322222 233433232222211111 33344443332 222222 234566
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 278 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~ 278 (411)
..+ +.+|.++|++||+++++|.+++ .|. ..++....+.|+.+.+|.++.+-..++++..+.+.+.-......
T Consensus 152 ~~~----~~~i~~~~~~~~al~~vDavss---~g~-~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (361)
T d2c0ra1 152 TIE----GAQFKAFPDTGSVPLIGDMSSD---ILS-RPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTM 223 (361)
T ss_dssp TTT----TEECSSCCCCTTSCEEEECTTT---TTS-SCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGG
T ss_pred cee----cceEEEeeccCCceEEEEeecc---ccc-cccccccceeEEEecccccccccCcEEEEEhHHhhhCccccccc
Confidence 677 7788899999999999999997 221 12333345667888999887311122222222221111100000
Q ss_pred --------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC-CceEE---eee-cceEEEEE
Q 015230 279 --------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICG---GYI-SGMFGFFF 345 (411)
Q Consensus 279 --------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~---~~~-g~~~~~~~ 345 (411)
........++........++.............++.+..+..+........ ..... ..+ -..+.+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~ 303 (361)
T d2c0ra1 224 LRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRL 303 (361)
T ss_dssp GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEEC
T ss_pred cccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEEC
Confidence 011122333333344333333333333333333333333333333322211 11110 001 12233322
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++.+.+++.+.|.++||.+..|.. ..+|+. ..+|.||++++++.|++..++
T Consensus 304 -------------~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 304 -------------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp -------------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------CCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 5666778999999999999988732 247884 566999999999999987653
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.38 E-value=2.2e-11 Score=108.60 Aligned_cols=310 Identities=14% Similarity=0.120 Sum_probs=184.6
Q ss_pred CCcHHHHHHHHHHHHcCCC--------CCCC---CHHHHHHHHHHHhhCCCCCEE-EEeCChHHHHHHHHHHHHhccCCc
Q 015230 52 HADDQVLAALGETMKKGTS--------FGAP---CLLENVLAEMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~--------~~~~---~~~~~~l~~~l~~~~~~~~~v-~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
..+|.+++++...+.+--. |++. ++.+....++..+.++ .+.+ +-..||+.|+.+++.. ...+++
T Consensus 34 ~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~-a~~anVqp~SGs~An~av~~a--ll~pGD 110 (405)
T d1kl1a_ 34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG-AEHANVQPHSGAQANMAVYFT--VLEHGD 110 (405)
T ss_dssp CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC-CSEEECCCSSHHHHHHHHHHH--HCCTTC
T ss_pred cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC-CCcceeeccCchHHHHHHHHH--hcCCCC
Confidence 3678999999888866211 1111 3333334455556664 3333 4555899999888874 356788
Q ss_pred EEEEEeCCcCCCchhhh--hhcCCCC--cccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 120 RIIKFEGCYHGHADPFL--VKAGSGV--ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~--~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
+|+.++.+.-|+..-.. ...|... ..+++....+.. |++++++..+++ ++++|++-...
T Consensus 111 ~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~I-------------D~d~l~~~a~~~--kPklIi~G~S~-- 173 (405)
T d1kl1a_ 111 TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVI-------------DYDDVREKARLH--RPKLIVAAASA-- 173 (405)
T ss_dssp EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSB-------------CHHHHHHHHHHH--CCSEEEECCSS--
T ss_pred EEEEeecccccccccCccccccceEEEEEEeccchhcccc-------------cHHHHHHHHHhh--CcceEEecccc--
Confidence 99998877766543211 1111111 111111111111 899999999875 67788875422
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~ 271 (411)
..-..+ +++++++|++.|++|++|-+|. |+ -.|.. .. .+.. .|++ |.-|+|.| -|-|.+..+++..+.
T Consensus 174 y~r~~d----~~~~reIad~vga~l~~D~aH~~GLIa~g~~-~~-P~~~-aDvvt~tThKtlrG-Prgg~I~~~~~~~~~ 245 (405)
T d1kl1a_ 174 YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH-PN-PVPY-AHFVTTTTHKTLRG-PRGGMILCQEQFAKQ 245 (405)
T ss_dssp CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS-CC-STTT-CSEEEEESSSTTCC-CSCEEEEECHHHHHH
T ss_pred cccccC----hHHHHHHHhhhCCEEecchhhHhhhhhhhhc-CC-hhhh-hhheeccccccccC-CCCceEEecchhHHH
Confidence 111223 9999999999999999999994 77 44421 11 1121 3655 45699985 246666778888777
Q ss_pred hcCC-CCcccccCCCCCHHHHHHHHHHH-HHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee--ecceEEEEE
Q 015230 272 VAPA-GPMYQAGTLSGNPLAMTAGIHTL-KRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFF 345 (411)
Q Consensus 272 ~~~~-~~~~~~~t~~~~~~~~a~~~~~l-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~ 345 (411)
+... .+...+++ ..-..++-..++ +.+.. ++..+++.++++.+.+.|.+. ++... .+ ...++++++
T Consensus 246 i~~avfPg~qggp---~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~----G~~vv-~ggTd~H~vlvdl 317 (405)
T d1kl1a_ 246 IDKAIFPGIQGGP---LMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----GFTLV-SGGTDNHLLLVDL 317 (405)
T ss_dssp HHHHHTTTTCSSC---CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEG-GGSCSSSEEEEEC
T ss_pred HHhhhCcccccCc---chhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC----Cceee-cCCCccceeeccc
Confidence 7531 12222222 222222222233 33332 567788889999999888876 33221 22 355788887
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C------Ccceee------ecCCCHHHHHHHHHHHHHHHH
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q------FEAGFT------SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~------~~~~~~------~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+... ......+.|.+.||.+.-. . ...+|+ .....++|+.++.+.|.++++
T Consensus 318 ~~~~~------------~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 318 RPQQL------------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp GGGTC------------CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred cccCC------------cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 54321 1245566677779998632 1 123677 256788999999999988875
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=2e-11 Score=109.39 Aligned_cols=311 Identities=14% Similarity=0.088 Sum_probs=182.9
Q ss_pred CCcHHHHHHHHHHHHcCC--C------CCCC--CHHHHHHH-HHHHhhCCCCCEE-EEeCChHHHHHHHHHHHHhccCCc
Q 015230 52 HADDQVLAALGETMKKGT--S------FGAP--CLLENVLA-EMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~--~------~~~~--~~~~~~l~-~~l~~~~~~~~~v-~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
+.+|.+++++...+.+-- + |++. .+..+.++ ++..+.++ .+.+ +-..||+.|+.+++.. ...+++
T Consensus 37 ~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~-a~~anVqp~SGs~AN~av~~A--ll~pGD 113 (416)
T d1dfoa_ 37 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG-ADYANVQPHSGSQANFAVYTA--LLEPGD 113 (416)
T ss_dssp CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHHHHH--HCCTTC
T ss_pred cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC-CCcceeecccCccHHHHHHHH--hcCCCC
Confidence 467889999888887621 1 1222 12334444 44445664 3333 4456899999998874 356788
Q ss_pred EEEEEeCCcCCCchhhhh--hcCCCCcccCCCC-CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCC
Q 015230 120 RIIKFEGCYHGHADPFLV--KAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~--~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~ 196 (411)
+|+..+.+.-|+..-... ..|......++.. ..+.. |.+++++..++. ++++|++-. +..
T Consensus 114 ~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~I-------------Dyd~l~~~a~~~--kPklIi~G~--S~y 176 (416)
T d1dfoa_ 114 TVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHI-------------DYADLEKQAKEH--KPKMIIGGF--SAY 176 (416)
T ss_dssp EEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSB-------------CHHHHHHHHHHH--CCSEEEEEC--SSC
T ss_pred eeeeccccccccccccccccccCceEEEEecccCCccCc-------------cHHHHHHHHHHh--ccceEEecc--ccc
Confidence 899988877666543221 1111111111110 01111 899999998865 677777753 333
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCccccccccc---HHHH
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR---RDIM 269 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~---~~~~ 269 (411)
....+ +++++++|++.|++|++|-+|. |+ -.|.. . +.+.. .|++ |+.|+|.| -|-|.+..+ +++.
T Consensus 177 ~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~~-~-sP~~~-aDvvt~tThKtlrG-PrggiI~~~~~~~~~~ 248 (416)
T d1dfoa_ 177 SGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGVY-P-NPVPH-AHVVTTTTHKTLAG-PRGGLILAKGGSEELY 248 (416)
T ss_dssp CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS-C-CCTTT-SSEEEEESSSTTCC-CSCEEEEESSCCHHHH
T ss_pred ccccC----HHHHHHHHHhcCceEEcchhhhhcceecccc-C-Ccccc-cceeeeehhhcccC-CCceEEEeccchHhHH
Confidence 33444 9999999999999999999995 77 44421 1 11222 2555 56799986 135555553 5666
Q ss_pred HHhcCC-CCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ecceEEEE
Q 015230 270 EMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFF 344 (411)
Q Consensus 270 ~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~ 344 (411)
+.+... .+..++++ .....++...++..... ++..+++.++++.+.+.|.+. ++.....+ ...+++++
T Consensus 249 ~~i~~avfPg~qggp---~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~----G~~iv~ggTdnHlvlvd 321 (416)
T d1dfoa_ 249 KKLNSAVFPGGQGGP---LMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER----GYKVVSGGTDNHLFLVD 321 (416)
T ss_dssp HHHHHHHTTTTCSSC---CHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEE
T ss_pred HHHHhhhCcccccCc---cHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC----CcccccCCCCCceeEEE
Confidence 666421 12222222 22223332333333222 567788889999999888876 33221111 24577888
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C------Ccceee------ecCCCHHHHHHHHHHHHHHH
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q------FEAGFT------SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~------~~~~~~------~~~~t~~~i~~~i~~l~~~~ 408 (411)
+.+.. ....+..+.|.+.||.+.-. . ...+|+ .....++|++++.+.|.+++
T Consensus 322 l~~~~------------~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l 389 (416)
T d1dfoa_ 322 LVDKN------------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVL 389 (416)
T ss_dssp CGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ecccC------------CCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 75422 12366777788889998532 1 123677 25668899999999988887
Q ss_pred H
Q 015230 409 R 409 (411)
Q Consensus 409 ~ 409 (411)
+
T Consensus 390 ~ 390 (416)
T d1dfoa_ 390 D 390 (416)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=1.2e-11 Score=112.58 Aligned_cols=218 Identities=17% Similarity=0.140 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 154 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (411)
+.-...+.+.++++. +.+..+.++||..|+..++.. ....+++||+....|++..........+
T Consensus 57 nPT~~~LE~~la~LE-~~~~a~~~~SGmaAi~~~~~~--l~~~gd~il~~~~~Yg~t~~l~~~~~~~------------- 120 (421)
T d2ctza1 57 NPTVDVLEKRLAALE-GGKAALATASGHAAQFLALTT--LAQAGDNIVSTPNLYGGTFNQFKVTLKR------------- 120 (421)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEECSCCCHHHHHHHHTHHHH-------------
T ss_pred CHHHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHh--hcccccceeecCCcCCchhHHHHHHHhh-------------
Confidence 556678888888777 567788889999999888863 3456789999998988754333221111
Q ss_pred CCCCCCceeecCCCC-HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 155 PKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
.+..+..+...+ .+..++.++ +++++|++|.+.|+...+.+ +++|+++|+++|+++|+|.+.+ ++
T Consensus 121 ---~gi~~~~~d~~~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a---~t- 186 (421)
T d2ctza1 121 ---LGIEVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFG---MG- 186 (421)
T ss_dssp ---TTCEEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGG---GG-
T ss_pred ---ccccceecccccCcchhccccC---CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEeccccc---cc-
Confidence 112233333223 344444443 58999999999999999999 9999999999999999999985 11
Q ss_pred CccccccCCCcc--hhhhhhhccC-C-cccccccccHHH-H---------------------HHhcCCC-------Cccc
Q 015230 234 GGAQEYFGVTPD--LTTLGKIIGG-G-LPVGAYGGRRDI-M---------------------EMVAPAG-------PMYQ 280 (411)
Q Consensus 234 ~~~~~~~~~~~d--~~~~sK~~~~-G-~~~g~~~~~~~~-~---------------------~~~~~~~-------~~~~ 280 (411)
++....+....| +-|.+|.++| | .-.|.++.+++. . +.+.... ....
T Consensus 187 P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (421)
T d2ctza1 187 GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLR 266 (421)
T ss_dssp GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHH
T ss_pred ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHH
Confidence 122222333345 4589999997 5 445555543221 0 0000000 0000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 281 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 281 ~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
......+|..+......++-+ +-..++..+++..+.+.|++.
T Consensus 267 ~~G~~~sP~~a~l~~rgl~TL--~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 267 DQGQALGPFEAWVVLLGMETL--SLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HHCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCCCCHHHHHHHhcCCcch--hhHHHHHHHHHHHHHhhhccC
Confidence 012344677776666665433 334566777777777777664
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.32 E-value=3.8e-12 Score=115.96 Aligned_cols=313 Identities=11% Similarity=-0.039 Sum_probs=161.3
Q ss_pred CcHHHHHHHHHHHHcCCCC-------CC----CCHHHHHHHHHHHhhCC-CCC-EEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 53 ADDQVLAALGETMKKGTSF-------GA----PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~-------~~----~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.|++|++++.+.+-+.... +. ..+..++..+.+++.++ ..+ .+++++|++++...+.... ...+++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~-~~~~~~ 92 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN-LLTKGT 92 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-HCCTTC
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhh-hcccCc
Confidence 6899999999877552110 00 13355677788888887 333 5777777766665555432 445667
Q ss_pred EEEEEeCCcCCCchhhhhhc-CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 120 RIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
.+++.....++......... +........+..... +.+.++.... ......++ +.+|.
T Consensus 93 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~---~~tg~ 151 (360)
T d1w23a_ 93 IGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQ--------------SIPDFSEFQL----NENDAYLH---ITSNN 151 (360)
T ss_dssp EEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSC--------------SCCCGGGCCC----CTTEEEEE---EESEE
T ss_pred ccceeeccchhhhhHHHHHHhhhcceeecccccccc--------------chhhhhhccc----ccccceeE---ecCCc
Confidence 77776665554332222221 111111111100000 1222222222 12223332 34577
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCC
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 277 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~ 277 (411)
..+ +++|.++|+++|+++|+|.+++ .| ....++ ..+.|+.+++|.++.+-..|++...+...+.......
T Consensus 152 ~~~----~~~i~~~~~~~g~l~ivDavqs---~g~~~id~~--~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T d1w23a_ 152 TIY----GTQYQNFPEINHAPLIADMSSD---ILSRPLKVN--QFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPT 222 (360)
T ss_dssp TTT----TEECSSCCCCCSSCEEEECTTT---TTSSCCCGG--GCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCG
T ss_pred ccc----ceeeeeccccceeeEEeecccc---ccccccccc--cccceEEeeccccccCCcceeeEechhhhcccccCCc
Confidence 778 8899999999999999999997 22 222233 3456888889877642223444433333222111000
Q ss_pred c--------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE----Eeee-cceEEEE
Q 015230 278 M--------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC----GGYI-SGMFGFF 344 (411)
Q Consensus 278 ~--------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~-g~~~~~~ 344 (411)
. ...................+....+........+........+............ ...+ -..+.|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~ 302 (360)
T d1w23a_ 223 MLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFN 302 (360)
T ss_dssp GGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEE
T ss_pred chhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEE
Confidence 0 0011222233333333333333333333333333333333333333222121110 1111 1233443
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc--ceeeec--CCCHHHHHHHHHHHHHHHH
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AGFTSL--AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~--~~~~~~--~~t~~~i~~~i~~l~~~~~ 409 (411)
+ ++....+.+.+.|.++||.+..|... .+|++. .+|.|+++++++.+.+..+
T Consensus 303 i-------------~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 303 L-------------RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp C-------------SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred c-------------CCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence 3 45566678999999999998876322 478764 5599999999999998765
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.2e-12 Score=117.41 Aligned_cols=317 Identities=8% Similarity=-0.077 Sum_probs=159.8
Q ss_pred CcHHHHHHHHHHHHcCCCC-------CCC----CHHHHHHHHHHHhhCCC--CCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 53 ADDQVLAALGETMKKGTSF-------GAP----CLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~-------~~~----~~~~~~l~~~l~~~~~~--~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.+++|++++.+.+.+.... +.. .+..++..+.+++.++. ...|+|++|++++...+.... ...+++
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~-~~~~~~ 90 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLN-ILGDKT 90 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-HCTTCC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhc-cccccc
Confidence 6899999999987652111 111 34467888888888873 347888887777766655322 344556
Q ss_pred EEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCcc
Q 015230 120 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 199 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~ 199 (411)
.+++....+.+..... .....+..........+. ..+.+.+++.+. .+++++++...++.+|..
T Consensus 91 ~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~~~v~v~~~~~~t~~~ 154 (360)
T d1bjna_ 91 TADYVDAGYWAASAIK-EAKKYCTPNVFDAKVTVD------------GLRAVKPMREWQ---LSDNAAYMHYCPNETIDG 154 (360)
T ss_dssp EEEEEESSHHHHHHHH-HHTTTSEEEEEECEEEET------------TEEEECCGGGCC---CCSSCSCEEECSEETTTT
T ss_pred ccceecccchhhhhHH-HHhhcCccceeeccccCC------------Ccchhhhhhhhc---cCCceeEEEecccccccC
Confidence 6666655544322221 121111111000000000 002222222222 223333333334456666
Q ss_pred CCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc-
Q 015230 200 APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM- 278 (411)
Q Consensus 200 ~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~- 278 (411)
.+ .+.+ .++.+++++++|.+++ + + ...++.++.+.++.+.+|.++++...+.++.++...+........
T Consensus 155 ~~----~~~i--~~~~~~~~v~vDa~~~-~--~-~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (360)
T d1bjna_ 155 IA----IDET--PDFGADVVVAADFSST-I--L-SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSIL 224 (360)
T ss_dssp EE----CCCC--CCCCTTCCEEEECTTT-T--T-SSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGG
T ss_pred cc----ccce--ecccccceeeeeeecc-c--c-ceeeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcch
Confidence 55 3233 4677899999998885 2 1 123444566778889999998543344444443322211110000
Q ss_pred -------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe----eecceEEEEEec
Q 015230 279 -------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTE 347 (411)
Q Consensus 279 -------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~~ 347 (411)
.........+.....+.........+...+...++.......+.+............ ..-..+.|.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~-- 302 (360)
T d1bjna_ 225 DYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQL-- 302 (360)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEE--
T ss_pred hhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEc--
Confidence 011122333333333333322222233333333333333333333322222211111 1123445555
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~~l~~~~~ 409 (411)
++....+.+.+.|.++||.+..|.. +.+|++ ..+|+||++++++.|++..+
T Consensus 303 -----------~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 303 -----------ADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp -----------SSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -----------CCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 3444557888999999999987632 247875 56799999999999998754
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.18 E-value=1.7e-09 Score=98.29 Aligned_cols=311 Identities=18% Similarity=0.109 Sum_probs=178.5
Q ss_pred CCcHHHHHHHHHHHHcCCC--------CCCC---CHHHHHHHHHHHhhCC-CC--CEE-EEeCChHHHHHHHHHHHHhcc
Q 015230 52 HADDQVLAALGETMKKGTS--------FGAP---CLLENVLAEMVISAVP-SI--EMV-RFVNSGTEACMGVLRLARAFT 116 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~--------~~~~---~~~~~~l~~~l~~~~~-~~--~~v-~~~~~g~~a~~~al~~~~~~~ 116 (411)
+.+|.+++++...+.+--. |++. ++.+....++..+.++ .+ ..+ +-..||+.|+.+++.. ...
T Consensus 42 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~a--ll~ 119 (470)
T d1rv3a_ 42 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTA--LVE 119 (470)
T ss_dssp CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HTC
T ss_pred cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHH--hcC
Confidence 4688899998888876211 1111 4444445566677775 21 122 4555899999998874 345
Q ss_pred CCcEEEEEeCCcCCCchhhhhhcCCC---------CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 117 GRERIIKFEGCYHGHADPFLVKAGSG---------VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
++++|+.++...-|+..-........ ....++....+.. |.+++++..++. ++++|
T Consensus 120 pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~I-------------Dyd~l~~~a~~~--kPklI 184 (470)
T d1rv3a_ 120 PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI-------------DYDRLEENARLF--HPKLI 184 (470)
T ss_dssp TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSB-------------CHHHHHHHHHHH--CCSEE
T ss_pred CCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcc-------------cHHHHHHHHHhh--CcceE
Confidence 77888888776555432211111110 0011111111111 899999988865 67788
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchh--hhhhhccCCcccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAY 262 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~--~~sK~~~~G~~~g~~ 262 (411)
++-... ..-..+ +++++++|++.|++|++|-+|. |+ -.|.. ..+++ .|++ |.-|.|.| -|-|.+
T Consensus 185 i~G~S~--y~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~----aDvvt~tTHKtlrG-PrgGiI 253 (470)
T d1rv3a_ 185 IAGTSC--YSRNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH----CHVVTTTTHKTLRG-CRAGMI 253 (470)
T ss_dssp EECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT----CSEEEEESSGGGCC-CSCEEE
T ss_pred eechhh--ccccCC----HHHHHHHHhccCCeEEecchhhhhhccccccCChhhe----eeeeeeehhhhccC-CcceEE
Confidence 875422 122234 9999999999999999999994 77 44421 12221 2665 56699975 134555
Q ss_pred cccH---------------HHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH
Q 015230 263 GGRR---------------DIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 263 ~~~~---------------~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~ 323 (411)
..++ ++.+.+... -+...+ ++..-..++...++..... ++..+++.++.+.+.+.|.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qg---gph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~ 330 (470)
T d1rv3a_ 254 FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQG---GPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE 330 (470)
T ss_dssp EEECSBCC-------CCBCCHHHHHHHHHTTTTCC---SCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccccccccccccchhHHHHHHHHhhhcCccccc---cchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh
Confidence 5543 244444320 012222 1222223332233333222 56667788888888888877
Q ss_pred HHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C-----Ccceee-----
Q 015230 324 AGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFT----- 388 (411)
Q Consensus 324 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~----- 388 (411)
. ++.....+ ...++++++.+..+ +..+..+.|.+.||.+.-. . ...+|+
T Consensus 331 ~----G~~v~~ggTdnHlvlvdl~~~g~------------~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~al 394 (470)
T d1rv3a_ 331 L----GYKIVTGGSDNHLILVDLRSKGT------------DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPAL 394 (470)
T ss_dssp T----TCEEGGGSCSSSEEEEEGGGGTC------------CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHH
T ss_pred C----CceeccCCCCCceEEEeecccCC------------cHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHH
Confidence 5 33221111 35577887754322 2256677788889988532 1 123677
Q ss_pred -ecCCCHHHHHHHHHHHHHHHH
Q 015230 389 -SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.....++|+.++.+.|.++++
T Consensus 395 TtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 395 TSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHH
Confidence 256788999999888888764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.17 E-value=1.1e-09 Score=99.29 Aligned_cols=312 Identities=16% Similarity=0.090 Sum_probs=171.6
Q ss_pred CCcHHHHHHHHHHHHcCC--CC---------CCCCHHHHHHHHHHHhhCC-CCC-E--EEEeCChHHHHHHHHHHHHhcc
Q 015230 52 HADDQVLAALGETMKKGT--SF---------GAPCLLENVLAEMVISAVP-SIE-M--VRFVNSGTEACMGVLRLARAFT 116 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~--~~---------~~~~~~~~~l~~~l~~~~~-~~~-~--v~~~~~g~~a~~~al~~~~~~~ 116 (411)
..+|.+++++...+.+-- ++ .+.++.+....++..+.++ ... . =+-..||+.|+.+++.. ...
T Consensus 38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~a--ll~ 115 (463)
T d2a7va1 38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA--LLQ 115 (463)
T ss_dssp CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HCC
T ss_pred cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHH--HcC
Confidence 468889999888887621 11 1236666666667777785 332 1 25566899999888874 345
Q ss_pred CCcEEEEEeCCcCCCchhhh-------hhcCCCCcccCCC--CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 117 GRERIIKFEGCYHGHADPFL-------VKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~-------~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
++++|+.++.+.-|+..-.. ...+......++. ...+.. |.+++++..++. ++++|
T Consensus 116 pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~I-------------Dyd~~~~~a~~~--kPklI 180 (463)
T d2a7va1 116 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI-------------DYNQLALTARLF--RPRLI 180 (463)
T ss_dssp SCEECCC-------------------------------CCBCTTTCSB-------------CHHHHHHHHHHH--CCSEE
T ss_pred CCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcC-------------cHHHHHHHHhhc--CCceE
Confidence 67788777665544431111 1111111111111 011111 899999998865 67788
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCccccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYG 263 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~ 263 (411)
++-... ..-..+ +++++++|++.|++|++|-+|. |+ -.|.. .. .+.. .|++ |.-|+|.| -|-|.+.
T Consensus 181 i~G~S~--y~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~~-~s-P~~~-aDvvt~tTHKTlrG-PrgGiIl 250 (463)
T d2a7va1 181 IAGTSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVI-PS-PFKH-ADIVTTTTHKTLRG-ARSGLIF 250 (463)
T ss_dssp EECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSS-CC-GGGT-CSEEEEESSGGGCS-CSCEEEE
T ss_pred Eecccc--cccccC----HHHHHHHhhcccceEEechhhhhHHhhhhhh-cC-hhhh-hhhhhchhhhhhcC-CCceEEE
Confidence 875422 122234 9999999999999999999995 77 44421 11 1122 2655 45699985 1344555
Q ss_pred ccH---------------HHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHH-HHhc--CChHHHHHHHHHHHHHHHHHH
Q 015230 264 GRR---------------DIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLK-RLKE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 264 ~~~---------------~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~-~~~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
.++ ++.+.+... -+.+.+++ ..-..++-..++. .++. ++..+++.++++.+.+.|.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggp---h~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~ 327 (463)
T d2a7va1 251 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP---HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER 327 (463)
T ss_dssp EECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSC---CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EcccccccccccCccchhHHHHHhhhhcCcccchhh---hhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 554 233333310 12222222 2222222222332 2322 567788888888888888876
Q ss_pred HHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---------Ccceee------
Q 015230 325 GKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------ 388 (411)
Q Consensus 325 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------~~~~~~------ 388 (411)
++.....+ ...++++++.+... +.....+.|.+.||.+.-.. ...+|+
T Consensus 328 ----G~~vv~ggTdnHlvlvdl~~~~~------------~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~T 391 (463)
T d2a7va1 328 ----GYSLVSGGTDNHLVLVDLRPKGL------------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALT 391 (463)
T ss_dssp ----TCEEGGGSCSSSEEEEECTTTTC------------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHH
T ss_pred ----CCeeecCCCCCceeeeeccccCC------------CHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHH
Confidence 32211111 24577888743321 23667788888899986321 123677
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q 015230 389 SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.....++|+.++.+.|.+++.
T Consensus 392 trG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 392 SRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHH
Confidence 256678999888888887764
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=3.2e-08 Score=91.45 Aligned_cols=314 Identities=18% Similarity=0.197 Sum_probs=170.0
Q ss_pred CCcHHHHHHHHHHHHcCCCCCC-C-----CHHHHHHHHHHHhhCCCCCEEEEe-CChHHHHHHHHHHHHhcc------CC
Q 015230 52 HADDQVLAALGETMKKGTSFGA-P-----CLLENVLAEMVISAVPSIEMVRFV-NSGTEACMGVLRLARAFT------GR 118 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~~-~-----~~~~~~l~~~l~~~~~~~~~v~~~-~~g~~a~~~al~~~~~~~------~~ 118 (411)
|-+|.+.+.+.+-....++|+. - -+..-++...++++. +.|-+-.. ..|..|...|+.+++.+. ..
T Consensus 76 hy~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLT-GMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~ 154 (471)
T d1wyub1 76 KYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALT-GMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT 154 (471)
T ss_dssp CCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCccccccchHHHHHHHHHHHHHHHhhhcccccc
Confidence 5567888888764443444442 1 222345566666666 55544322 246666666665554431 12
Q ss_pred cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 119 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
..++...+.++..........+......+.... +. .+.+.++.... ++++++++...++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~---~~~a~v~v~~p~~~g~~ 217 (471)
T d1wyub1 155 RRVVLVPDSAHGSNPATASMAGYQVREIPSGPE-GE-------------VDLEALKRELG---PHVAALMLTNPNTLGLF 217 (471)
T ss_dssp CCEEEEETTSCTHHHHHHHHTTCEEEEECBCTT-SS-------------BCHHHHHHHCS---TTEEEEEECSSCTTSCC
T ss_pred cccccCCcccccceeeeeecccceeeccccccc-cc-------------ccchhhhhhhh---ccccceeeccCCCcccc
Confidence 344555555654443333333332222221111 11 15666665443 57888888776666655
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccc----cc-ccccCccccccCCCcch-hhhhhhc----cCCcc-cccccccHH
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMT----GF-RLAYGGAQEYFGVTPDL-TTLGKII----GGGLP-VGAYGGRRD 267 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~----g~-~~g~~~~~~~~~~~~d~-~~~sK~~----~~G~~-~g~~~~~~~ 267 (411)
... .+++.+++++++..+++|-+.- ++ .+|..+ ..|+ +..++.| ++|-| +|++.++++
T Consensus 218 e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g-------~div~vg~~q~~G~P~~~GGP~~G~~a~~~~ 286 (471)
T d1wyub1 218 ERR----ILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMG-------FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH 286 (471)
T ss_dssp CTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHT-------CSEEECCTTTTTCCCCTTSCCCCCCEEECGG
T ss_pred cch----hhhhHHHHHhccccccccccchhhhhhccccCccc-------ccccccccccccccccccccccccceeehhh
Confidence 444 8899999999999888876542 22 222111 1122 2234444 43445 788888888
Q ss_pred HHHHhcCC-----C--------C---cccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 268 IMEMVAPA-----G--------P---MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 268 ~~~~~~~~-----~--------~---~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
++..+... . + ......++.+.+.+.++...+..+.. +++-+...++.+|+.++|++.
T Consensus 287 ~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~---- 362 (471)
T d1wyub1 287 LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK---- 362 (471)
T ss_dssp GGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred hhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhc----
Confidence 77655410 0 0 00011233334433344444554444 677788999999999999653
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----Cccee--eecCCCHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGF--TSLAHSSDDIQHTI 401 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~--~~~~~t~~~i~~~i 401 (411)
+... ....-++-.|.+.. +.+.....+.+.|.++|++-.... .+.+. ..=..|++|||+++
T Consensus 363 G~~~-~~~~~ff~EFvv~~-----------~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv 430 (471)
T d1wyub1 363 GYRV-PYDGPSMHEFVAQP-----------PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFA 430 (471)
T ss_dssp TCBC-SSCSSCCSCEEEBC-----------STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHH
T ss_pred Ccee-ccCcceeeEEeecC-----------CCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHH
Confidence 2221 11222333343321 122234678899999999653221 12232 34467999999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
++|++++++
T Consensus 431 ~aL~~i~~e 439 (471)
T d1wyub1 431 EAMGALLKK 439 (471)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.00 E-value=4.5e-09 Score=95.94 Aligned_cols=284 Identities=15% Similarity=0.119 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEE-eCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhh----hhhcCCCCcccCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF----LVKAGSGVATLGLP 149 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~-~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~----~~~~g~~~~~~~~~ 149 (411)
-+..-++.++++++. +.|.+-+ ...|.+|...++.+++.+.++.++++....++. .... +...|-.+..++..
T Consensus 107 Lq~l~e~q~~l~elt-Gmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~-~~~v~~t~a~~~g~~vv~v~~~ 184 (437)
T d1wyua1 107 LQATFEYQTMIAELA-GLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPLE 184 (437)
T ss_dssp HHHHHHHHHHHHHHH-TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHHhh-CCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChH-HhhhhhhhcccceeeEEeeecc
Confidence 344567777888777 5555533 336777888888788788888888876655432 2222 12233333332221
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
.... +. .+..+++++|+++.++ ..|.+.+ +++|.+++++.|.++++|-....+
T Consensus 185 ~~~~---------------~~-------~~~~~~~Aavmi~~Pn-t~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al 237 (437)
T d1wyua1 185 GGRT---------------PL-------PEVGEEVGAVVVQNPN-FLGALED----LGPFAEAAHGAGALFVAVADPLSL 237 (437)
T ss_dssp TTBC---------------CC-------CCCCTTEEEEEEESSC-TTSBCCC----HHHHHHHHHHTTCEEEEECCTTGG
T ss_pred cccc---------------hh-------hhhccceeEEEEcccc-ccccccc----hHHHHHHhhhccceEEeeechhhh
Confidence 1100 10 1123578888776554 3577766 999999999999988877543211
Q ss_pred ccccCccccccCCCcchhh-hhhhc----cCCcc-cccccccHHHHHHhcCCCC----------c---------------
Q 015230 230 RLAYGGAQEYFGVTPDLTT-LGKII----GGGLP-VGAYGGRRDIMEMVAPAGP----------M--------------- 278 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~-~sK~~----~~G~~-~g~~~~~~~~~~~~~~~~~----------~--------------- 278 (411)
+..-.-..+|. |++. -+|.| ++|-| .|++.+++++...+..... .
T Consensus 238 --~~l~~Pg~~Ga--Di~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRe 313 (437)
T d1wyua1 238 --GVLKPPGAYGA--DIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA 313 (437)
T ss_dssp --GTBCCHHHHTC--SEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG
T ss_pred --hcccccccccc--ceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeeccccccccccc
Confidence 11111112233 4431 13433 32334 7777888777655532000 0
Q ss_pred -ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcc
Q 015230 279 -YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 354 (411)
Q Consensus 279 -~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 354 (411)
-.++.++.+.+.+..+...+..+.. ++.-++...+++|+.++|.++ +..........+--|.+.-
T Consensus 314 katsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~----~g~~~~~~~~~f~ef~v~~------- 382 (437)
T d1wyua1 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALAL------- 382 (437)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEEC-------
T ss_pred ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc----CCeeccCCCCeeeEEEEEC-------
Confidence 0111233344433344444444433 455567777888888888665 3222222222333333321
Q ss_pred hhcccchHHHHHHHHHHHHcCeEeccC-----CCcceee--ecCCCHHHHHHHHHHHHHHH
Q 015230 355 DAKKSETTKFARFYRGMLEEGVYFAPS-----QFEAGFT--SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~Gi~v~~~-----~~~~~~~--~~~~t~~~i~~~i~~l~~~~ 408 (411)
..++..+.+.|.++|+..... ..+.+.+ .-..|+++||+++++|++++
T Consensus 383 ------~~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 383 ------PKDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp ------SSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ------CCCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 112367999999999974321 2223333 34678999999999999874
|